BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011428
(486 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|118481211|gb|ABK92556.1| unknown [Populus trichocarpa]
Length = 619
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/477 (80%), Positives = 434/477 (90%), Gaps = 3/477 (0%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+LI+ CK Q LKVVQLTS+MPASDLR ALAGPPDI+++TP C+ K LS GVL+S+S +D
Sbjct: 136 SLIDSCKAQ--LKVVQLTSNMPASDLRNALAGPPDILVSTPSCVAKSLSVGVLKSESIND 193
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL+ILVLDEADLLLS+GYE+DLKAL+A++PR CQCLLMSATSS+DVDKLKKL+LHNPY+L
Sbjct: 194 SLEILVLDEADLLLSFGYEEDLKALTALVPRRCQCLLMSATSSADVDKLKKLVLHNPYVL 253
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TLPEV VKDEVIPKNVQQFW+SC +RDKL++IL LLKL+LVQKK LIFTN IDM+FRLK
Sbjct: 254 TLPEVEGVKDEVIPKNVQQFWVSCGDRDKLVHILALLKLDLVQKKVLIFTNAIDMSFRLK 313
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEKFGIKSA+LNAELPQNSRLHILEEFNAGLFDYLIATDD +TKEK++++EG ++R
Sbjct: 314 LFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDRETKEKEKANEGSLAETR 373
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
KSKKH K KLDSEFGVVRGIDFKNVHTVIN++MP +A GYVHRIGRTGRAY+TG+SVSLV
Sbjct: 374 KSKKHAKQKLDSEFGVVRGIDFKNVHTVINYDMPLSATGYVHRIGRTGRAYSTGSSVSLV 433
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
SPDEM+I EEIKSF+GDDEN +SN+I+P+PLL +NAVESLRYRAED AKSVTKIAVRE+R
Sbjct: 434 SPDEMEILEEIKSFLGDDENNESNVISPYPLLTKNAVESLRYRAEDTAKSVTKIAVREAR 493
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
AQDLRNEILNSEKLKAHFEVNP+DLDLLKHDK LSKKPPA HL DVPDYLLDA T+EA K
Sbjct: 494 AQDLRNEILNSEKLKAHFEVNPRDLDLLKHDKVLSKKPPAPHLSDVPDYLLDATTKEASK 553
Query: 422 MVKLARAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 477
MVKLARAAMGN NS RRQGP+R FRKS DPLKSFSAE +R KG MKREG++GDDT
Sbjct: 554 MVKLARAAMGNNNSGRRQGPKRNFRKSKDPLKSFSAEGPRRGRKGGMKREGKDGDDT 610
>gi|359496815|ref|XP_002273641.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 16, partial [Vitis
vinifera]
Length = 545
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/478 (82%), Positives = 435/478 (91%), Gaps = 3/478 (0%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
++LIELC+GQ LKVVQLTSSM SDLR ALAGPPDI+++TPGC+PKCLS GVLQ+ S +
Sbjct: 61 LSLIELCRGQ--LKVVQLTSSMSPSDLRVALAGPPDILVSTPGCIPKCLSAGVLQAASIN 118
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
+SL+ILVLDEADLLLSYGYEDDLKAL+A +PR CQCLLMSATSS+DV+KLKKLILHNP+I
Sbjct: 119 ESLEILVLDEADLLLSYGYEDDLKALTAHVPRRCQCLLMSATSSADVEKLKKLILHNPFI 178
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
LTLPEVGD KDE+IPKNVQQFWISCS RDKLLYIL LLKLELVQKK LIFTN+IDMAFRL
Sbjct: 179 LTLPEVGDGKDEIIPKNVQQFWISCSARDKLLYILALLKLELVQKKILIFTNSIDMAFRL 238
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
KLFLEKFGIKSA+LNAELPQNSRLHILEEFNAGLFDYLIATD +Q KEK+Q+DEG ++
Sbjct: 239 KLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEP 298
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
RKS+KH K KLDSEFGVVRGIDFKNVHTVINFEMPQNA GYVHRIGRTGRAYNTGASVSL
Sbjct: 299 RKSRKHSKQKLDSEFGVVRGIDFKNVHTVINFEMPQNAPGYVHRIGRTGRAYNTGASVSL 358
Query: 301 VSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRES 360
VSPDEM+I EEIKS +GDDEN++SN IAPFPLL +NAVESLRYRAEDV+KSVTK+AVRES
Sbjct: 359 VSPDEMEILEEIKSILGDDENKESNFIAPFPLLTKNAVESLRYRAEDVSKSVTKLAVRES 418
Query: 361 RAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEAC 420
RAQDLRNEI+NSEKLKAHFEVN +DLDLLKHDK LSKKP +HLRDVPDYLLD TQEA
Sbjct: 419 RAQDLRNEIVNSEKLKAHFEVNQRDLDLLKHDKVLSKKPIPTHLRDVPDYLLDPTTQEAS 478
Query: 421 KMVKLARAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 477
K+VKLARAAMGN N +RRQG RRKFRKS DPLK+FSAE K+A KG MKR+ ++ DD+
Sbjct: 479 KIVKLARAAMGNTNPARRQGSRRKFRKSRDPLKTFSAEAPKKASKGGMKRKEKDNDDS 536
>gi|255579537|ref|XP_002530611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223529859|gb|EEF31791.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 616
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/486 (76%), Positives = 424/486 (87%), Gaps = 3/486 (0%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
ALI+ CK VQLK VQLTS M SDLR A+AGPPDI+I++P + KCLS G+LQS S +D
Sbjct: 133 ALIDWCK--VQLKAVQLTSKMSGSDLRTAIAGPPDILISSPASLAKCLSVGLLQSASIND 190
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL+ILVLDEADLLLS+GYEDDL+AL+A+IPR CQCLLMSATSS DVDKLKKL+LHNPYIL
Sbjct: 191 SLEILVLDEADLLLSFGYEDDLRALTALIPRRCQCLLMSATSSDDVDKLKKLMLHNPYIL 250
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TLPEV KDE IPKNVQQFWISCS RDKL++IL LLKL+LVQKK LIFTN+IDM+FRL+
Sbjct: 251 TLPEVEGNKDEAIPKNVQQFWISCSGRDKLVHILALLKLDLVQKKVLIFTNSIDMSFRLR 310
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD++TKEK+Q ++
Sbjct: 311 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDSETKEKEQEQADRNLAQS 370
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
+ K K KLDSEFGVVRGIDFKNVHTV+N++MP NAAGYVHRIGRTGR YN+G+SVSLV
Sbjct: 371 RKSKKSKQKLDSEFGVVRGIDFKNVHTVVNYDMPLNAAGYVHRIGRTGRGYNSGSSVSLV 430
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
SPDEM+I E++KSF+GDDEN+DSNIIAPFPLL +NAVESLRYRAEDVAKSVTKIAV+E+R
Sbjct: 431 SPDEMEILEDVKSFLGDDENKDSNIIAPFPLLTKNAVESLRYRAEDVAKSVTKIAVKEAR 490
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
AQDLRNEILNSEKLKAHFE NP+DLDLLKHDK LSK PPA HLRDVPDYL+DA T+EA K
Sbjct: 491 AQDLRNEILNSEKLKAHFEANPRDLDLLKHDKVLSKNPPAPHLRDVPDYLMDATTKEASK 550
Query: 422 MVKLARAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDTGKH 480
MVKLARAAMG N SRRQG ++KF KS DPLK+ S + K++ KG MKRE ++GD T KH
Sbjct: 551 MVKLARAAMGKNNPSRRQGSKKKFIKSKDPLKALSFQAPKKSDKGGMKRERKDGDSTHKH 610
Query: 481 KKKKSL 486
KK +++
Sbjct: 611 KKGRTV 616
>gi|224094833|ref|XP_002310257.1| predicted protein [Populus trichocarpa]
gi|222853160|gb|EEE90707.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/477 (75%), Positives = 412/477 (86%), Gaps = 25/477 (5%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+LI+ CK Q LKVVQLTS+MPASDLR ALAGPPDI+++TP C+ K LS GVL+S+S +D
Sbjct: 136 SLIDSCKAQ--LKVVQLTSNMPASDLRNALAGPPDILVSTPSCVAKSLSVGVLKSESIND 193
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL+ILVLDEADLLLS+GYE+DLKAL+A++PR CQCLLMSATSS+DVDKLKKL+LHNPY+L
Sbjct: 194 SLEILVLDEADLLLSFGYEEDLKALTALVPRRCQCLLMSATSSADVDKLKKLVLHNPYVL 253
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TLPEV VKDEVIPKNVQQFW+SC +RDKL++IL LLKL+LVQKK LIFTN IDM+FRLK
Sbjct: 254 TLPEVEGVKDEVIPKNVQQFWVSCGDRDKLVHILALLKLDLVQKKVLIFTNAIDMSFRLK 313
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEK EFNAGLFDYLIATDD +TKEK++++EG ++R
Sbjct: 314 LFLEK----------------------EFNAGLFDYLIATDDRETKEKEKANEGSLAETR 351
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
KSKKH K KLDSEFGVVRGIDFKNVHTVIN++MP +A GYVHRIGRTGRAY+TG+SVSLV
Sbjct: 352 KSKKHAKQKLDSEFGVVRGIDFKNVHTVINYDMPLSATGYVHRIGRTGRAYSTGSSVSLV 411
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
SPDEM+I EEIKSF+GDDEN +SN+I+P+PLL +NAVESLRYRAED AKSVTKIAVRE+R
Sbjct: 412 SPDEMEILEEIKSFLGDDENNESNVISPYPLLTKNAVESLRYRAEDTAKSVTKIAVREAR 471
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
AQDLRNEILNSEKLKAHFEVNP+DLDLLKHDK LSKKPPA HL DVPDYLLDA T+EA K
Sbjct: 472 AQDLRNEILNSEKLKAHFEVNPRDLDLLKHDKVLSKKPPAPHLSDVPDYLLDATTKEASK 531
Query: 422 MVKLARAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 477
MVKLARAAMGN NS RRQGP+R FRKS DPLKSFSAE +R KG MKREG++GDDT
Sbjct: 532 MVKLARAAMGNNNSGRRQGPKRNFRKSKDPLKSFSAEGPRRGRKGGMKREGKDGDDT 588
>gi|356535071|ref|XP_003536072.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Glycine
max]
Length = 601
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/489 (74%), Positives = 411/489 (84%), Gaps = 8/489 (1%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L+ELC+ VQLKVVQL S+M A+DLRAALAGPPDI+I+TP C+ KCLS GVLQ+ S +
Sbjct: 117 SLVELCR--VQLKVVQLNSNMLANDLRAALAGPPDILISTPACVAKCLSCGVLQAASINA 174
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL+ LVLDEADLLLSYGYE+D+KAL+ +PR CQCLLMSATSS+DVDKLKKLILHNP+IL
Sbjct: 175 SLETLVLDEADLLLSYGYENDIKALTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFIL 234
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TLPEVG+ KDEVIPKNVQQFWISC DKLLYIL +LKL LVQKK LIFTNTIDM+FRLK
Sbjct: 235 TLPEVGNHKDEVIPKNVQQFWISCPASDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLK 294
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEKFGI+SA+LN ELPQNSRLHILEEFNAGLFDYLIATD +Q+KEKD+ + V SR
Sbjct: 295 LFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESIVGSR 354
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
KS+KH K KLDSEFGVVRGIDFKNV+TVINFEMPQ+ AGYVHRIGRTGRAYN+GASVSLV
Sbjct: 355 KSRKHAKIKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYNSGASVSLV 414
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
S DEM EEI+SFVGDDEN+ +N IA FPLL +NAVESLRYRAEDVAKSVT+IAVRESR
Sbjct: 415 STDEMDTLEEIRSFVGDDENKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESR 474
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
AQDLRNEILNSEKLK HFE NPKDLDLLKHDK LSK P HLRDVP+YLLD T+EA +
Sbjct: 475 AQDLRNEILNSEKLKTHFETNPKDLDLLKHDKILSKNAPPPHLRDVPEYLLDKPTKEARE 534
Query: 422 MVKLARAAMGNKNSSRRQGPRRKFRK-SDPLKS-FSAEPTKRAGKGRMK--REGRNGDDT 477
MVKLAR AMGN N RR+G +RK RK DPLK+ ++ +KR K R + N D
Sbjct: 535 MVKLARDAMGNNN--RRKGSKRKLRKEGDPLKAIYATASSKRPHKARKTGGSDSLNSSDR 592
Query: 478 GKHKKKKSL 486
KHKK K +
Sbjct: 593 HKHKKNKGI 601
>gi|449451323|ref|XP_004143411.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Cucumis
sativus]
gi|449508529|ref|XP_004163338.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like [Cucumis
sativus]
Length = 596
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/486 (75%), Positives = 420/486 (86%), Gaps = 6/486 (1%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+LIE C+ VQ+KV QLTSSM SDLR ALAGPPDI++ATP C+PKCLS GVLQ S ++
Sbjct: 116 SLIETCR--VQVKVAQLTSSMSHSDLRTALAGPPDIIVATPACIPKCLSAGVLQPTSINE 173
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL+ILVLDEADLLLSYGYEDD+KA +A +PR CQCLLMSATSS DV+KLKKLILHNP+IL
Sbjct: 174 SLEILVLDEADLLLSYGYEDDIKAFAAHVPRSCQCLLMSATSSEDVEKLKKLILHNPFIL 233
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TLPEVGDVKD++IPKNVQQF ISC RDKLL+IL+LLKL+LVQKK LIFTN+IDM FRLK
Sbjct: 234 TLPEVGDVKDDLIPKNVQQFSISCDARDKLLHILSLLKLDLVQKKVLIFTNSIDMGFRLK 293
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD+QTKEK+ ++E G+VD R
Sbjct: 294 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDSQTKEKEANEE-GNVDKR 352
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
KS+K K K+DSEFGVVRGIDFKNV+TVINFE+P +A+GY+HRIGRTGRAYNTGAS+SLV
Sbjct: 353 KSRKRAKQKIDSEFGVVRGIDFKNVYTVINFELPPSASGYIHRIGRTGRAYNTGASISLV 412
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
SPDEM FEEI+SF+ D D++II PFPLL +NAVESLRYRAEDV+KSVTK+A+RESR
Sbjct: 413 SPDEMDNFEEIQSFLRAD--GDTDIIVPFPLLTKNAVESLRYRAEDVSKSVTKLAIRESR 470
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
A DLRNEILNSEKLKAHFE NPKDLDLLKHDK LSK PPA HLRDVPDYL+D TQEA K
Sbjct: 471 ALDLRNEILNSEKLKAHFESNPKDLDLLKHDKILSKNPPAPHLRDVPDYLVDPVTQEASK 530
Query: 422 MVKLARAAMGNKNSSRRQGPRRKFRK-SDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKH 480
++KLARAAMGN S RR+G +RK R DPLK+FSAE KR+ +G RE +N D +
Sbjct: 531 IIKLARAAMGNVQSGRRRGFKRKSRNDKDPLKTFSAEGPKRSRRGGGNREDKNDDQNNRR 590
Query: 481 KKKKSL 486
KKK S+
Sbjct: 591 KKKNSV 596
>gi|357441703|ref|XP_003591129.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355480177|gb|AES61380.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 604
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/489 (71%), Positives = 399/489 (81%), Gaps = 8/489 (1%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L+ELCK V LK VQL S+M A+DL+AAL GPPD++I+TP C+ KCLS VLQ+ S +
Sbjct: 120 SLLELCK--VPLKAVQLNSNMLATDLQAALVGPPDVLISTPACIAKCLSNSVLQAASING 177
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL+ LVLDEADLLLSYGYE+D+KAL+ IPR CQCLLMSATSS DVDKLKKL+LHNP IL
Sbjct: 178 SLETLVLDEADLLLSYGYENDIKALTPHIPRSCQCLLMSATSSDDVDKLKKLMLHNPVIL 237
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TLPEVG+ KDEVIPKNVQQFWI C DKLLYIL +LKLELVQKK LIFTN ID +FRLK
Sbjct: 238 TLPEVGNRKDEVIPKNVQQFWIYCPANDKLLYILAMLKLELVQKKVLIFTNNIDTSFRLK 297
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEKFGIKSA+LNAELPQNSRLHILEEFNAGLFDYLIATD +Q+ EKD++ + V S+
Sbjct: 298 LFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDISQSTEKDEAPKENIVGSK 357
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
KS+K+ K KLDSEFGVVRGIDFKNV+TVINFEMP++ GYVHRIGRTGRAY++G S+SLV
Sbjct: 358 KSRKYTKLKLDSEFGVVRGIDFKNVYTVINFEMPRSVTGYVHRIGRTGRAYSSGTSISLV 417
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
S DEM FEE++SFVGD+EN SN IA FPLL ++AVESLRYRAEDVAKSVTKIAVRESR
Sbjct: 418 STDEMDTFEEVRSFVGDNENNGSNSIAEFPLLTKSAVESLRYRAEDVAKSVTKIAVRESR 477
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
AQDLRNEILNS KL AHF+ NP+DLDLLKHDK LSK P HLRDVPDYL+D T+EA
Sbjct: 478 AQDLRNEILNSAKLTAHFQTNPRDLDLLKHDKVLSKTAPPPHLRDVPDYLIDKTTKEARA 537
Query: 422 MVKLARAAMGNKNSSRRQGPRRKFRK-SDPLKSFSAEPTKRAGKGRMKREGRNGDDTG-- 478
MVKL R AMGN N R+G +RK RK DPL + SA +K+ KG K NG G
Sbjct: 538 MVKLTRDAMGNNN--HRRGSKRKSRKGGDPLMAISAGVSKKPHKGFKKDGASNGKSNGDR 595
Query: 479 -KHKKKKSL 486
KHKK K++
Sbjct: 596 QKHKKTKAI 604
>gi|297798432|ref|XP_002867100.1| hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp.
lyrata]
gi|297312936|gb|EFH43359.1| hypothetical protein ARALYDRAFT_491167 [Arabidopsis lyrata subsp.
lyrata]
Length = 634
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 340/495 (68%), Positives = 404/495 (81%), Gaps = 14/495 (2%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+LIELC+ VQLK VQLTSSM ASD+R ALAG P+I+++TP C+PKC + GVL+ + S+
Sbjct: 144 SLIELCR--VQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSE 201
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL ILVLDEADLLLSYGYED+L++++++IPR CQCLLMSAT+SSDV+KLKKLILHNP +L
Sbjct: 202 SLAILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVL 261
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TL E D KDE +P NVQQFWISCS +DKLL+IL LLKLE+VQKK LIF NTIDM FRLK
Sbjct: 262 TLTEEND-KDEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLK 320
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-TQTKEKDQSDEGGHVDS 240
LFLEKFGIKSAILN ELPQNSRLHILE+FNAGLFDYLIATDD +QTK++ + +G
Sbjct: 321 LFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEENKE 380
Query: 241 RKSKKH-PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
K KLD+EFGVVRGIDFK VHTVINF+MPQ+ GY+HRIGRTGRAY++G+SVS
Sbjct: 381 NNRNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVS 440
Query: 300 LVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 359
LVSPDEM+ FE+IKSF+ D+N+DS+II PFPLL +NAVESLRYRAEDVAKSVTKIAVRE
Sbjct: 441 LVSPDEMEGFEDIKSFLASDKNKDSDIITPFPLLTENAVESLRYRAEDVAKSVTKIAVRE 500
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEA 419
SRAQDLRNEI+NSEKLKAHFE NP+DLDLL+HDK LSK PA HL+D+P+YL+D KTQEA
Sbjct: 501 SRAQDLRNEIINSEKLKAHFEANPRDLDLLRHDKPLSKTAPAPHLKDIPEYLVDPKTQEA 560
Query: 420 CKMVKLARAAMGNKNSSRRQGPRRKF------RKSDPLKSFSAEPTKRAGKGRM--KREG 471
KMVKLARAAMGN S G R + SDPLK+F+ +KR G + K++G
Sbjct: 561 SKMVKLARAAMGNTRRSGGGGGRNNKNKKRSRKGSDPLKTFNPNGSKRGHGGGVGQKKDG 620
Query: 472 RNGDDTGKHKKKKSL 486
R+ D G KK+K++
Sbjct: 621 RDSSD-GSTKKQKTV 634
>gi|15236218|ref|NP_195217.1| DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana]
gi|75337761|sp|Q9SW44.1|RH16_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 16
gi|5123708|emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana]
gi|7270442|emb|CAB80208.1| RNA helicase (RH16) [Arabidopsis thaliana]
gi|27754373|gb|AAO22635.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana]
gi|28394057|gb|AAO42436.1| putative DEAD/DEAH box RNA helicase protein [Arabidopsis thaliana]
gi|332661036|gb|AEE86436.1| DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana]
Length = 626
Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust.
Identities = 337/493 (68%), Positives = 408/493 (82%), Gaps = 16/493 (3%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+LIELC+ VQLK VQLTSSM ASD+R ALAG P+I+++TP C+PKC + GVL+ + S+
Sbjct: 142 SLIELCR--VQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSE 199
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL ILVLDEADLLLSYGYED+L++++++IPR CQCLLMSAT+SSDV+KLKKLILHNP +L
Sbjct: 200 SLSILVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVL 259
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TL E D K+E +P NVQQFWISCS +DKLL+IL LLKLE+VQKK LIF NTIDM FRLK
Sbjct: 260 TLTEDND-KEEAVPSNVQQFWISCSAQDKLLHILALLKLEVVQKKILIFINTIDMGFRLK 318
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-TQTKEKDQSDEG-GHVD 239
LFLEKFGIKSAILN ELPQNSRLHILE+FNAGLFDYLIATDD +QTK++ + +G + +
Sbjct: 319 LFLEKFGIKSAILNGELPQNSRLHILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKE 378
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
++K+ K K KLD+EFGVVRGIDFK VHTVINF+MPQ+ GY+HRIGRTGRAY++G+SVS
Sbjct: 379 NKKNNKRSKPKLDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVS 438
Query: 300 LVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 359
L+SPDEM+ FE+IKSF+ D+N+D +II PFPLL +NAVESLRYRAEDVAKSVTKIAVRE
Sbjct: 439 LISPDEMEGFEDIKSFLASDKNKDIDIITPFPLLTENAVESLRYRAEDVAKSVTKIAVRE 498
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEA 419
SRAQDLRNEI+NSEKLKAHFE NP+DLDLL+HDK LSK PA HL+D+P+YL+DAKTQEA
Sbjct: 499 SRAQDLRNEIINSEKLKAHFEANPRDLDLLRHDKPLSKTAPAPHLKDIPEYLVDAKTQEA 558
Query: 420 CKMVKLARAAMGNKNSSRRQGPRRKF------RKSDPLKSFSAEPTKRAGKGRMKREGRN 473
KMVKLARAAMGN S G R + SDPLK+F+ +KR G+ ++
Sbjct: 559 SKMVKLARAAMGNTRRSGGGGGRNNKNKKRSRKGSDPLKTFNPNGSKRGAVGQ-----KD 613
Query: 474 GDDTGKHKKKKSL 486
G D+ KK+K++
Sbjct: 614 GKDSSSTKKQKTV 626
>gi|218193250|gb|EEC75677.1| hypothetical protein OsI_12480 [Oryza sativa Indica Group]
Length = 661
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 297/489 (60%), Positives = 383/489 (78%), Gaps = 12/489 (2%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L+E C + LKVVQ+ +SM D++ AL+GPP+I++ TP C+ C+S G+++ S +
Sbjct: 180 SLLEFCTSK--LKVVQVNASMSDKDIKVALSGPPNILVTTPACVASCISKGIIRGSSIKE 237
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL +++LDEADLLLSY EDD+KAL IPR CQ +LMSATSS+D++KL KL+LHNP+IL
Sbjct: 238 SLSMMILDEADLLLSYRCEDDIKALVPHIPRSCQSILMSATSSADIEKLTKLLLHNPFIL 297
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TL EVG KD++IPKNVQQFWISC +DK+LYIL LLKLEL+QKK LIF N+ID AF+L+
Sbjct: 298 TLTEVGHAKDDLIPKNVQQFWISCDAKDKMLYILVLLKLELIQKKVLIFVNSIDSAFKLR 357
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEKFGI+S++LNAELPQNSRLHI++ FNA LFDYLIATDD+++KE+ Q+++G DSR
Sbjct: 358 LFLEKFGIRSSVLNAELPQNSRLHIIQAFNARLFDYLIATDDSKSKEERQANKGNKKDSR 417
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
S+K + LD+EFGVVRGIDFKNV TV+N++MP + AGY+HR+GRTGRA TGAS+SLV
Sbjct: 418 VSRKQLQQTLDAEFGVVRGIDFKNVFTVVNYDMPPDPAGYIHRVGRTGRANKTGASISLV 477
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
SP E IFE+I++ + D EN D++ I+PFPLL +NAVESLRYRA+DVA+SVT ++E+R
Sbjct: 478 SPKENGIFEDIENMLKDVENRDTSCISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEAR 537
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
QD++NEILNSEKLKAHF+ NP+DLDLLKHDK LS K +HLRDVP+YL+D T+EA
Sbjct: 538 RQDIKNEILNSEKLKAHFDENPRDLDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASN 597
Query: 422 MVKLARAAMGNKNSSRRQGPRRKF-----RKSDPLKSFSAEPTKRAGKGRMKREGRNGDD 476
+VKL+RAAM RR+ R F R SDPLK+FSAE R +GR +R+G D
Sbjct: 598 VVKLSRAAMDIDKPRRRK--RMGFKGGSGRSSDPLKTFSAEGKSRR-RGRKERDGEQ--D 652
Query: 477 TGKHKKKKS 485
K KK +S
Sbjct: 653 RRKRKKVES 661
>gi|115455097|ref|NP_001051149.1| Os03g0728800 [Oryza sativa Japonica Group]
gi|75323066|sp|Q6ATJ8.1|RH16_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 16
gi|50428704|gb|AAT77055.1| putative DEAD/DEAH box helicase [Oryza sativa Japonica Group]
gi|108710879|gb|ABF98674.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|113549620|dbj|BAF13063.1| Os03g0728800 [Oryza sativa Japonica Group]
gi|215695549|dbj|BAG90740.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 670
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/489 (60%), Positives = 382/489 (78%), Gaps = 12/489 (2%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L+E C + LKVVQ+ +SM D++ AL+GPP+I++ TP C+ C+S G+++ S +
Sbjct: 189 SLLEFCTSK--LKVVQVNASMSDKDIKVALSGPPNILVTTPACVASCISKGIIRGSSIKE 246
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL +++LDEADLLLSY EDD+KAL IPR CQ +LMSATSS+D++KL KL+LHNP+IL
Sbjct: 247 SLSMMILDEADLLLSYRCEDDIKALVPHIPRSCQSILMSATSSADIEKLTKLLLHNPFIL 306
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TL EVG KD++IPKNVQQFWISC +DK+LYIL LLKLEL+QKK LIF N+ID AF+L+
Sbjct: 307 TLTEVGHAKDDLIPKNVQQFWISCDAKDKMLYILVLLKLELIQKKVLIFVNSIDSAFKLR 366
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEKFGI+S++LNAELPQNSRLHI++ FNA LFDYLIATDD ++KE+ Q+++G DSR
Sbjct: 367 LFLEKFGIRSSVLNAELPQNSRLHIIQAFNARLFDYLIATDDNKSKEERQANKGNKKDSR 426
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
S+K + LD+EFGVVRGIDFKNV TV+N++MP + AGYVHR+GRTGRA TGAS+SLV
Sbjct: 427 VSRKQLQQTLDAEFGVVRGIDFKNVFTVVNYDMPPDPAGYVHRVGRTGRANKTGASISLV 486
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
SP E IFE+I++ + D EN D++ I+PFPLL +NAVESLRYRA+DVA+SVT ++E+R
Sbjct: 487 SPKENGIFEDIENMLKDVENRDTSCISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEAR 546
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
QD++NEILNSEKLKAHF+ NP+DLDLLKHDK LS K +HLRDVP+YL+D T+EA
Sbjct: 547 RQDIKNEILNSEKLKAHFDENPRDLDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASN 606
Query: 422 MVKLARAAMGNKNSSRRQGPRRKF-----RKSDPLKSFSAEPTKRAGKGRMKREGRNGDD 476
+VKL+RAAM RR+ R F R SDPLK+FSAE R +GR +R+G D
Sbjct: 607 VVKLSRAAMDIDKPRRRK--RMGFKGGSGRSSDPLKTFSAEGKSRR-RGRKERDGEQ--D 661
Query: 477 TGKHKKKKS 485
K KK +S
Sbjct: 662 RRKRKKVES 670
>gi|222625724|gb|EEE59856.1| hypothetical protein OsJ_12436 [Oryza sativa Japonica Group]
Length = 661
Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/489 (60%), Positives = 382/489 (78%), Gaps = 12/489 (2%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L+E C + LKVVQ+ +SM D++ AL+GPP+I++ TP C+ C+S G+++ S +
Sbjct: 180 SLLEFCTSK--LKVVQVNASMSDKDIKVALSGPPNILVTTPACVASCISKGIIRGSSIKE 237
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL +++LDEADLLLSY EDD+KAL IPR CQ +LMSATSS+D++KL KL+LHNP+IL
Sbjct: 238 SLSMMILDEADLLLSYRCEDDIKALVPHIPRSCQSILMSATSSADIEKLTKLLLHNPFIL 297
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TL EVG KD++IPKNVQQFWISC +DK+LYIL LLKLEL+QKK LIF N+ID AF+L+
Sbjct: 298 TLTEVGHAKDDLIPKNVQQFWISCDAKDKMLYILVLLKLELIQKKVLIFVNSIDSAFKLR 357
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEKFGI+S++LNAELPQNSRLHI++ FNA LFDYLIATDD ++KE+ Q+++G DSR
Sbjct: 358 LFLEKFGIRSSVLNAELPQNSRLHIIQAFNARLFDYLIATDDNKSKEERQANKGNKKDSR 417
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
S+K + LD+EFGVVRGIDFKNV TV+N++MP + AGYVHR+GRTGRA TGAS+SLV
Sbjct: 418 VSRKQLQQTLDAEFGVVRGIDFKNVFTVVNYDMPPDPAGYVHRVGRTGRANKTGASISLV 477
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
SP E IFE+I++ + D EN D++ I+PFPLL +NAVESLRYRA+DVA+SVT ++E+R
Sbjct: 478 SPKENGIFEDIENMLKDVENRDTSCISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEAR 537
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
QD++NEILNSEKLKAHF+ NP+DLDLLKHDK LS K +HLRDVP+YL+D T+EA
Sbjct: 538 RQDIKNEILNSEKLKAHFDENPRDLDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASN 597
Query: 422 MVKLARAAMGNKNSSRRQGPRRKF-----RKSDPLKSFSAEPTKRAGKGRMKREGRNGDD 476
+VKL+RAAM RR+ R F R SDPLK+FSAE R +GR +R+G D
Sbjct: 598 VVKLSRAAMDIDKPRRRK--RMGFKGGSGRSSDPLKTFSAEGKSRR-RGRKERDGEQ--D 652
Query: 477 TGKHKKKKS 485
K KK +S
Sbjct: 653 RRKRKKVES 661
>gi|356576789|ref|XP_003556512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
16-like [Glycine max]
Length = 365
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/358 (79%), Positives = 315/358 (87%)
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
+ADLLLSYGYE+ +KA + +PR CQCLLMSATSS+DVDKLKKLILH+P+ILTLPEVG+
Sbjct: 3 QADLLLSYGYENHIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHSPFILTLPEVGNH 62
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
KDEVIP NVQQFWISC DKLL IL +LKL LVQKK LIFTNTIDM+FRLKLF EKFGI
Sbjct: 63 KDEVIPXNVQQFWISCPASDKLLNILAVLKLGLVQKKVLIFTNTIDMSFRLKLFXEKFGI 122
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+SA+LN ELPQNSRLHILEEFNAGLFDYLIATD +Q+KEKD+ + +V S KS++H K
Sbjct: 123 RSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNVGSWKSRQHAKI 182
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
KLDSEFGVVRGIDFKNV+TVINFEMP++ AGYVHRIGRTGRAYN+GASVSLVS DEM
Sbjct: 183 KLDSEFGVVRGIDFKNVYTVINFEMPESVAGYVHRIGRTGRAYNSGASVSLVSTDEMDTL 242
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
EEI+SFV DDEN+ +N IA FPLL +NAVESLRYRAEDVAKSVT+IAVRESRAQDLRNEI
Sbjct: 243 EEIRSFVRDDENKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEI 302
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLAR 427
LNSEKLKAHFE NPKDLDLLKHDK LSK PP HLRDVP+YLLD T+EA +MVKLAR
Sbjct: 303 LNSEKLKAHFETNPKDLDLLKHDKVLSKNPPPPHLRDVPEYLLDKPTKEAREMVKLAR 360
>gi|326529835|dbj|BAK08197.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 295/461 (63%), Positives = 368/461 (79%), Gaps = 9/461 (1%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L+ELC + LK+VQ+T+SM D++ AL+GPP+I++ TP C+ C+S G++Q S +
Sbjct: 180 SLLELCTSK--LKIVQVTASMSDKDIKLALSGPPNILVTTPACVAACISKGIVQGSSIKE 237
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL +++LDEADLLLSY EDDLKAL IPR CQ +LMSATSS D+DKL KL+LHNP++L
Sbjct: 238 SLSMMILDEADLLLSYRCEDDLKALVPHIPRSCQSILMSATSSPDIDKLTKLLLHNPFVL 297
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TL EVG KD+V+PKNVQQFWISCS +DK+LYIL+LLKLEL+QKK LIF N+ID AFRL+
Sbjct: 298 TLTEVGHAKDDVVPKNVQQFWISCSAKDKMLYILSLLKLELIQKKVLIFVNSIDNAFRLR 357
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEKF I+SA+LNAELPQNSRLHI+E FNA LFDYLIATDD +TK+ Q+++ DS+
Sbjct: 358 LFLEKFAIRSAVLNAELPQNSRLHIIEAFNARLFDYLIATDDNKTKDAKQTNKESKKDSK 417
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
S+KH + LD+EFGVVRGIDFKNV TV+NF+MP N AGY+HRIGRTGRA TGAS+SLV
Sbjct: 418 ASRKHLQQTLDAEFGVVRGIDFKNVFTVVNFDMPPNPAGYIHRIGRTGRANKTGASISLV 477
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
SP+E +FEEI+ + D E +D+N I PFPLL +NAVESLRYRA+DVA+SVT ++E+R
Sbjct: 478 SPEEENVFEEIEHMLQDVEKKDTNCILPFPLLTKNAVESLRYRAQDVARSVTSRDIQEAR 537
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
QD++NEILNSEKLKAHFE NP DLDLLKHDK L+ K +HLRDVP+YL+D T+EA
Sbjct: 538 RQDVKNEILNSEKLKAHFEENPTDLDLLKHDKLLTNKSIPAHLRDVPEYLIDPTTKEASN 597
Query: 422 MVKLARAAMGNKNSSRRQGPRRKFR-----KSDPLKSFSAE 457
VKL+RAAMG N R++ R FR SDPL++FSAE
Sbjct: 598 AVKLSRAAMGLDNPGRKK--RMGFRSGSGKSSDPLRTFSAE 636
>gi|242038265|ref|XP_002466527.1| hypothetical protein SORBIDRAFT_01g009400 [Sorghum bicolor]
gi|241920381|gb|EER93525.1| hypothetical protein SORBIDRAFT_01g009400 [Sorghum bicolor]
Length = 634
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 292/477 (61%), Positives = 369/477 (77%), Gaps = 23/477 (4%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
++L+E C +L+VVQ+T+SM D+ AL+GPP+I+++TP C+ C+S G+++ S
Sbjct: 133 LSLLEFC--TCKLRVVQVTASMSNKDITVALSGPPNILVSTPACVATCISKGIIRGPSVK 190
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
+SL +++LDEADLLLSY EDDLKAL IPR CQ +LMSATSSSDVDKL KL+LHNP+I
Sbjct: 191 ESLSMMILDEADLLLSYRCEDDLKALIPHIPRSCQSILMSATSSSDVDKLTKLLLHNPFI 250
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
LTL VG KD+VIPKNVQQFW+SC +DK+L+IL LLK EL+QKK LIF N+IDMAFRL
Sbjct: 251 LTLSVVGQAKDDVIPKNVQQFWVSCDAKDKMLHILALLKFELIQKKVLIFVNSIDMAFRL 310
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE------------ 228
+LFLEKFGI+SA+LNAELPQNSRLHI+E FNA LFDYLIATDDT+TKE
Sbjct: 311 RLFLEKFGIRSAVLNAELPQNSRLHIIEAFNARLFDYLIATDDTKTKEEKQTNKENKKEP 370
Query: 229 ------KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 282
+ Q+++ + + S+KH + LD+EFGVVRGIDFKNV TV+NF+MP +AAGYV
Sbjct: 371 KLSHKREKQTNKENQKEPKVSRKHLQQTLDAEFGVVRGIDFKNVFTVVNFDMPLDAAGYV 430
Query: 283 HRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLR 342
HR+GRTGRA TGAS+SLVSP+E F+EI+ + D E +D + I+PFPLL ++AVESLR
Sbjct: 431 HRVGRTGRANKTGASISLVSPEEDSTFKEIEHMLQDVEKKDMDCISPFPLLTKDAVESLR 490
Query: 343 YRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPAS 402
YRA+DVA++VT ++E+R QD++NEILNSEKLK+HFE NP+DLDLLKHDK LS K +
Sbjct: 491 YRAQDVARTVTTRDIQEARRQDIKNEILNSEKLKSHFEENPRDLDLLKHDKLLSNKEIPA 550
Query: 403 HLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR--RQGPRRKFRKS-DPLKSFSA 456
HLRDVPDYL+D KT+EA +VKL+RAAMG R RQG + KS DPLK+FSA
Sbjct: 551 HLRDVPDYLIDPKTKEASNVVKLSRAAMGIDKPQRRKRQGFKGGSGKSRDPLKTFSA 607
>gi|357115389|ref|XP_003559471.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like
[Brachypodium distachyon]
Length = 653
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 302/491 (61%), Positives = 380/491 (77%), Gaps = 17/491 (3%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L+ELC +V K+VQ+T+SM D++ AL+GPP+I++ TP C+ C+S G++Q S +
Sbjct: 171 SLLELCTSKV--KIVQVTASMSDKDIKLALSGPPNILVTTPACVATCISKGIVQGSSIKE 228
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL +++LDEADLLLSY EDDLKAL IPR CQ +LMSATSS D+DKL KL+LHNP+IL
Sbjct: 229 SLSMMILDEADLLLSYRCEDDLKALVPHIPRSCQSILMSATSSPDIDKLTKLLLHNPFIL 288
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
TL EVG KD+VIP+NVQQF ISCS +DK+LYIL LLKL+L+QKK LIF N+IDMAFRL+
Sbjct: 289 TLTEVGHAKDDVIPRNVQQFSISCSAKDKMLYILALLKLDLIQKKVLIFVNSIDMAFRLR 348
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLEKFGI+SA+LNAELPQNSRLHI+E FNA LFDYLIATDD + KE ++++ DSR
Sbjct: 349 LFLEKFGIRSAVLNAELPQNSRLHIIEAFNARLFDYLIATDDNKPKEVKETNKENKKDSR 408
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
+S+KH + LD+EFGVVRG+DFKNV TV+NF+MP N AGY+HRIGRTGRA +GAS+SLV
Sbjct: 409 QSRKHSQQTLDAEFGVVRGVDFKNVFTVVNFDMPPNPAGYIHRIGRTGRANKSGASISLV 468
Query: 302 SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
SP+E IFEEI+ V D +D + I+ FPLL +NAVESLRYRA+DVA+SVT ++E+R
Sbjct: 469 SPEENNIFEEIEQMVQDIAKKDISCISSFPLLTKNAVESLRYRAQDVARSVTSRDIQEAR 528
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
QD++NEILNSEKLKAHF NP DLDLLKHDK LS K +HLRDVP+YL+D T+EA
Sbjct: 529 RQDIKNEILNSEKLKAHFVENPTDLDLLKHDKLLSNKTIPAHLRDVPEYLIDPTTKEASN 588
Query: 422 MVKLARAAMGNKNSSRRQGPRRKF-----RKSDPLKSFSAEPTKRAGKGRMKREG--RNG 474
VKL+RAAMG N RR+ R F + DPL++FSAE GK R KR G R+G
Sbjct: 589 AVKLSRAAMGLDNPGRRK--RMGFKGGSGKSRDPLRTFSAE-----GKSR-KRGGKERDG 640
Query: 475 DDTGKHKKKKS 485
+ + ++KK+
Sbjct: 641 EQDRRKRRKKA 651
>gi|242081725|ref|XP_002445631.1| hypothetical protein SORBIDRAFT_07g022960 [Sorghum bicolor]
gi|241941981|gb|EES15126.1| hypothetical protein SORBIDRAFT_07g022960 [Sorghum bicolor]
Length = 632
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 291/473 (61%), Positives = 367/473 (77%), Gaps = 19/473 (4%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
++L+E C +L+VVQ+T+SM D+ AL+GPP+I+++TP C+ C+S G+++ S
Sbjct: 136 LSLLEFC--TCKLRVVQVTASMSDKDITVALSGPPNILVSTPACVATCISKGIIRGPSVK 193
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
+SL +++ DEADLLLSY EDDLKAL IPR CQ +LMSATSSSDVDKL KL+LHNP+I
Sbjct: 194 ESLSMMIFDEADLLLSYRCEDDLKALIPHIPRSCQSILMSATSSSDVDKLTKLLLHNPFI 253
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
LTL EVG KD++IPKNVQQFWISC +DK+L++L LLK EL+QKK LIF N+IDMAFRL
Sbjct: 254 LTLSEVGGTKDDMIPKNVQQFWISCDAKDKMLHMLALLKFELIQKKVLIFVNSIDMAFRL 313
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT-------------- 226
+LFLEKFGI SA+LNAELPQNSRLHI+E FNA LFDYLIATDDT+T
Sbjct: 314 RLFLEKFGIGSAVLNAELPQNSRLHIIEAFNARLFDYLIATDDTKTKEEKENKKEPKLSR 373
Query: 227 KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIG 286
K + Q+++ +S+ S+KH + LD+EFGVVRGIDFKNV TV+NF+MP +AAGYVHR+G
Sbjct: 374 KREKQTNKENEKESKVSRKHLQQTLDAEFGVVRGIDFKNVFTVVNFDMPLDAAGYVHRVG 433
Query: 287 RTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAE 346
RTGRA TGAS+SLVS +E F+EI+ + D E +D + I+PFPLL ++AVESLRYRA+
Sbjct: 434 RTGRANKTGASISLVSQEEDSTFKEIEHMLQDVEKKDMDCISPFPLLTKDAVESLRYRAQ 493
Query: 347 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 406
DVA+SVT ++E+R QD++NEILNSEKLK+HFE NP+DLDLLKHDK LS K +HLRD
Sbjct: 494 DVARSVTTRDIQEARRQDIKNEILNSEKLKSHFEENPRDLDLLKHDKLLSNKEIPAHLRD 553
Query: 407 VPDYLLDAKTQEACKMVKLARAAMGNKNSSR--RQGPRRKFRKS-DPLKSFSA 456
VPDYL+D KT+EA +VKL+RAAMG R RQG + KS DPLK+FSA
Sbjct: 554 VPDYLIDPKTKEASNVVKLSRAAMGIDKPQRRKRQGFKGGSGKSRDPLKTFSA 606
>gi|226507661|ref|NP_001141827.1| uncharacterized protein LOC100273968 [Zea mays]
gi|194706072|gb|ACF87120.1| unknown [Zea mays]
gi|413933175|gb|AFW67726.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 634
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 291/476 (61%), Positives = 363/476 (76%), Gaps = 22/476 (4%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
++L+ELC +L+VVQ+T+SM D+ AL+GPP+I+++TP C+ C+S G+++ +
Sbjct: 137 LSLLELC--TCKLRVVQVTASMSDKDITVALSGPPNILVSTPACVATCISKGIIRGPAVK 194
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
+SL +++LDEADLLLSY E DLKAL IPR CQ +LMSATSSSDVDKL KL+LHNP++
Sbjct: 195 ESLSMMILDEADLLLSYRCEVDLKALIPHIPRSCQSILMSATSSSDVDKLTKLLLHNPFV 254
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
LTL EVG KD+VIPKNVQQFWISC +DK+L+IL LLK EL+QKK LIF N+IDMAFRL
Sbjct: 255 LTLSEVGQAKDDVIPKNVQQFWISCDAKDKILHILALLKFELIQKKVLIFVNSIDMAFRL 314
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKD---------- 230
+L LEKFGI+SA+LNAELPQNSRLHI+E FNA LFDYLIATDDT+TKEK
Sbjct: 315 RLILEKFGIRSAVLNAELPQNSRLHIIEAFNARLFDYLIATDDTKTKEKQTNEENKKEAT 374
Query: 231 -------QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH 283
Q+++ + + S+KH + LD+EFGVVRGIDFKNV TV+NF+MP +A GYVH
Sbjct: 375 LSRKRKKQTNKENQKEQKVSRKHLQQTLDAEFGVVRGIDFKNVFTVVNFDMPLDATGYVH 434
Query: 284 RIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRY 343
RIGRTGRA TGAS+SLVSP E F+EI+ + D E +D + I+PFPLL ++AVESLRY
Sbjct: 435 RIGRTGRANKTGASISLVSPKEDSTFKEIEHMLQDVEKKDMDCISPFPLLTKDAVESLRY 494
Query: 344 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASH 403
RA+DVA+SVT V+E+R QD++NEILNSEKLK+HFE NP DLDLLKHDK L K ++
Sbjct: 495 RAQDVARSVTTRDVQEARRQDIKNEILNSEKLKSHFEENPTDLDLLKHDKLLCNKEIPAY 554
Query: 404 LRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR--RQGPRRKFRKS-DPLKSFSA 456
LRDVPDYL+D KT+EA VKL+RAAM R RQG + KS DPLK+FSA
Sbjct: 555 LRDVPDYLIDPKTKEASNAVKLSRAAMHIDKPQRRKRQGFKGGSGKSRDPLKTFSA 610
>gi|116787621|gb|ABK24578.1| unknown [Picea sitchensis]
Length = 465
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 284/433 (65%), Positives = 342/433 (78%), Gaps = 6/433 (1%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
+ GPPDIV+ATP C+ C+S +LQS S +SL LVLDEADLLLSYGYE DLK+L I
Sbjct: 1 MVGPPDIVVATPACIATCISKNILQSSSLEESLSTLVLDEADLLLSYGYEQDLKSLVHHI 60
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV-GDVKDEVIPKNVQQFWISCSERD 149
PR CQC+LMSATSS+DV+K+KKL+LH+P ILTL EV G+ + V+P +VQQFWISC D
Sbjct: 61 PRRCQCILMSATSSADVEKIKKLVLHSPVILTLTEVEGNEYNGVVPNSVQQFWISCDVHD 120
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
KLLYIL LLKLELVQKKALIF N+ID FRLKLFLE+FGIKSA+LN+ELPQNSRLH+LEE
Sbjct: 121 KLLYILALLKLELVQKKALIFVNSIDTGFRLKLFLEQFGIKSAVLNSELPQNSRLHMLEE 180
Query: 210 FNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
FNAG FDYLIA DD++ K +++ E + + S+K K DSEFGVVRGIDFKNV T
Sbjct: 181 FNAGSFDYLIAIDDSKPEKVENEPIEKRMANHKGSRKRHKRSFDSEFGVVRGIDFKNVRT 240
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK-SFVGDDE--NEDSN 325
VINF+MP N +GY+HRIGRTGRAY+TGASVSLVSP E +F EIK + G E E +
Sbjct: 241 VINFDMPLNPSGYIHRIGRTGRAYSTGASVSLVSPSEDDVFREIKVALSGGKELDTESTK 300
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
I+PFPLL +NAVESLRYRA+D+A+S+TK+AV+E+RA +LRNEILNSE+LKAHFE NPKD
Sbjct: 301 FISPFPLLTKNAVESLRYRAQDIAQSITKVAVKEARANELRNEILNSERLKAHFEDNPKD 360
Query: 386 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 445
L+LLKHDK LSKK P+SHL +PDYL+D T+ A K +KLAR AMG +S R ++K
Sbjct: 361 LELLKHDKVLSKKRPSSHLCAIPDYLVDPTTEVASKAIKLAREAMGQSHSGHRSWFKKKT 420
Query: 446 -RKSDPLKSFSAE 457
R DPLK+FS E
Sbjct: 421 GRTGDPLKTFSLE 433
>gi|168019520|ref|XP_001762292.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686370|gb|EDQ72759.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 558
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 258/459 (56%), Positives = 336/459 (73%), Gaps = 24/459 (5%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L E C L+VVQL ++M + ++ +LA PDI++ATP + C+S V+Q +
Sbjct: 89 SLAEYCGAT--LRVVQLATTMSTATMKMSLARVPDILVATPARIAACISQNVIQPAVLEE 146
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL +LVLDEADLL SYGYE+DL++L+ +PR CQCLLMSAT+S DVDKLKKL+LHNP L
Sbjct: 147 SLAMLVLDEADLLFSYGYEEDLRSLAVYVPRKCQCLLMSATASPDVDKLKKLVLHNPVTL 206
Query: 122 TLPEV--GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
TL E G V+PK+VQQF + C +DKLLY+L++LK +L+QKKA+IF NTID FR
Sbjct: 207 TLTEEVDGSGDTSVVPKSVQQFSVHCKSKDKLLYMLSILKYDLIQKKAIIFVNTIDTGFR 266
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE----------K 229
LKLFLE+FGIKSA+LN ELPQNSRLHIL++FN GLF++LIATDD ++ +
Sbjct: 267 LKLFLEQFGIKSAVLNGELPQNSRLHILQQFNVGLFEHLIATDDGKSLQPVSSTSKESSS 326
Query: 230 DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
+ E V+S+ SK KA D+EFGVVRGIDFKNV TV+N++MP+ AGY+HRIGRTG
Sbjct: 327 TKDSEAEPVESKSSK---KAVRDTEFGVVRGIDFKNVRTVVNYDMPETVAGYIHRIGRTG 383
Query: 290 RAYNTGASVSLVSPDEMKIFEEIK-SFVGDDENEDSN--IIAPFPLLAQNAVESLRYRAE 346
RA N G S+SLV P++ +I ++IK G DE + +N +I+PFPLL++ AVESLRYRAE
Sbjct: 384 RAGNAGISLSLVPPEDEEILKQIKVELSGVDEGQQNNKALISPFPLLSKTAVESLRYRAE 443
Query: 347 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 406
DV +SVTKIAVRE+RA++LR EILNSE+LKAHFE NP DL+LLKHDK LSK PA+HL+
Sbjct: 444 DVMRSVTKIAVREARAKELRIEILNSERLKAHFEDNPTDLELLKHDKVLSKVAPAAHLKT 503
Query: 407 VPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 445
VP+YL D T+ A + A + +K+ ++ P RK
Sbjct: 504 VPEYLRDPTTEAASR----AHNQIRDKSPTKASSPHRKL 538
>gi|302772787|ref|XP_002969811.1| hypothetical protein SELMODRAFT_440996 [Selaginella moellendorffii]
gi|300162322|gb|EFJ28935.1| hypothetical protein SELMODRAFT_440996 [Selaginella moellendorffii]
Length = 591
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 258/476 (54%), Positives = 342/476 (71%), Gaps = 8/476 (1%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L VQLT+SM ++ ++ A+ P+IV++TPGC+ C++ G + + S +SL LVLDEAD
Sbjct: 115 LTAVQLTTSMSSAVVKGAVTRRPNIVVSTPGCVASCIADGTISAPSLKESLATLVLDEAD 174
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV-GDVKD 131
LLLSYGYE+DL+ L +P CQC+LMSAT+S+DVDKLKKL+LH+P LTL EV G KD
Sbjct: 175 LLLSYGYEEDLQKLVLHVPPRCQCILMSATTSADVDKLKKLVLHDPVTLTLTEVDGSTKD 234
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+V+P VQQF + C DKLL++LTL++ EL+QKKALIF N ID +F++KLFLE+FGIKS
Sbjct: 235 DVVPSTVQQFMVRCEAEDKLLHLLTLVRFELIQKKALIFVNAIDTSFKIKLFLEQFGIKS 294
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
A+LNAELPQNSRLHIL+EFN GLFDY+IATDD ++ + + D+ G + K + +
Sbjct: 295 AVLNAELPQNSRLHILKEFNLGLFDYMIATDDGKSDKLETEDQAGGKLKNRKKLKKRI-M 353
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D+EFGVVRG+DFKNV+TV+NF++P+ GY+HRIGRTGRA N G +VS V + +
Sbjct: 354 DAEFGVVRGVDFKNVYTVVNFDLPRTVTGYIHRIGRTGRAGNAGVAVSFVCEGDEGLLSS 413
Query: 312 IKSFV-GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
++ + GD N I PFP + AVESLRYRAEDVA+ VTKI++RE+RA++L+ EIL
Sbjct: 414 LEDVLSGDSGNAGEKRILPFPTITSGAVESLRYRAEDVARGVTKISIREARAKELKMEIL 473
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAM 430
NSE+LKAHFE NP DL LLKHDK LSK+ P HLR VP+YL DA+ A K +K A AA+
Sbjct: 474 NSERLKAHFEDNPADLKLLKHDKPLSKRQPPQHLRSVPEYLRDAEVMAAGKAMKAANAAI 533
Query: 431 GNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGK-GRMKREGRNGDDTGKHKKKKS 485
G + S + R++ + DPLKS + KR GK GR + GR+ + H K+S
Sbjct: 534 GRPSVSYTK-KRKQNWEQDPLKSI-GKKHKRGGKPGRTQHPGRSHKNA--HSSKRS 585
>gi|297741871|emb|CBI33259.3| unnamed protein product [Vitis vinifera]
Length = 8206
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/292 (81%), Positives = 263/292 (90%), Gaps = 1/292 (0%)
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
FGIKSA+LNAELPQNSRLHILEEFNAGLFDYLIATD +Q KEK+Q+DEG ++ RKS+KH
Sbjct: 7906 FGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEPRKSRKH 7965
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
K KLDSEFGVVRGIDFKNVHTVINFEMPQNA GYVHRIGRTGRAYNTGASVSLVSPDEM
Sbjct: 7966 SKQKLDSEFGVVRGIDFKNVHTVINFEMPQNAPGYVHRIGRTGRAYNTGASVSLVSPDEM 8025
Query: 307 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
+I EEIKS +GDDEN++SN IAPFPLL +NAVESLRYRAEDV+KSVTK+AVRESRAQDLR
Sbjct: 8026 EILEEIKSILGDDENKESNFIAPFPLLTKNAVESLRYRAEDVSKSVTKLAVRESRAQDLR 8085
Query: 367 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA 426
NEI+NSEKLKAHFEVN +DLDLLKHDK LSKKP +HLRDVPDYLLD TQEA K+VKLA
Sbjct: 8086 NEIVNSEKLKAHFEVNQRDLDLLKHDKVLSKKPIPTHLRDVPDYLLDPTTQEASKIVKLA 8145
Query: 427 RAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 477
RAAMGN N +RRQG RRKFRKS DPLK+FSAE K+A KG MKR+ ++ DD+
Sbjct: 8146 RAAMGNTNPARRQGSRRKFRKSRDPLKTFSAEAPKKASKGGMKRKEKDNDDS 8197
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 154/186 (82%), Positives = 172/186 (92%), Gaps = 2/186 (1%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
++LIELC+GQ LKVVQLTSSM SDLR ALAGPPDI+++TPGC+PKCLS GVLQ+ S +
Sbjct: 44 LSLIELCRGQ--LKVVQLTSSMSPSDLRVALAGPPDILVSTPGCIPKCLSAGVLQAASIN 101
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
+SL+ILVLDEADLLLSYGYEDDLKAL+A +PR CQCLLMSATSS+DV+KLKKLILHNP+I
Sbjct: 102 ESLEILVLDEADLLLSYGYEDDLKALTAHVPRRCQCLLMSATSSADVEKLKKLILHNPFI 161
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
LTLPEVGD KDE+IPKNVQQFWISCS RDKLLYIL LLKLELVQKK LIFTN+IDMAFRL
Sbjct: 162 LTLPEVGDGKDEIIPKNVQQFWISCSARDKLLYILALLKLELVQKKILIFTNSIDMAFRL 221
Query: 181 KLFLEK 186
KLFLEK
Sbjct: 222 KLFLEK 227
>gi|359496992|ref|XP_003635393.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like, partial
[Vitis vinifera]
Length = 305
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/296 (80%), Positives = 266/296 (89%), Gaps = 1/296 (0%)
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242
+L +FGIKSA+LNAELPQNSRLHILEEFNAGLFDYLIATD +Q KEK+Q+DEG ++ RK
Sbjct: 1 YLWQFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEPRK 60
Query: 243 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 302
S+KH K KLDSEFGVVRGIDFKNVHTVINFEMPQNA GYVHRIGRTGRAYN+GASVSLVS
Sbjct: 61 SRKHSKQKLDSEFGVVRGIDFKNVHTVINFEMPQNAPGYVHRIGRTGRAYNSGASVSLVS 120
Query: 303 PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 362
PDEM+I EEIKS +GDDEN++SN IAPFPLL +NAVESLRYRAEDV+KSVTK+AVRESRA
Sbjct: 121 PDEMEILEEIKSILGDDENKESNFIAPFPLLTKNAVESLRYRAEDVSKSVTKLAVRESRA 180
Query: 363 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKM 422
QDLRNEILNSEKLKAHFEVN +DLDLLKHDK LSKKP +HLRDVPDYLLD TQEA K+
Sbjct: 181 QDLRNEILNSEKLKAHFEVNQRDLDLLKHDKVLSKKPIPTHLRDVPDYLLDPTTQEASKI 240
Query: 423 VKLARAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 477
VKLARAAMGN N +RRQG RRKFRKS DPLK+FSAE K+A KG +KR+ ++ DD+
Sbjct: 241 VKLARAAMGNTNPARRQGSRRKFRKSRDPLKTFSAEAPKKAPKGGVKRKEKDNDDS 296
>gi|302806830|ref|XP_002985146.1| hypothetical protein SELMODRAFT_424270 [Selaginella moellendorffii]
gi|300146974|gb|EFJ13640.1| hypothetical protein SELMODRAFT_424270 [Selaginella moellendorffii]
Length = 578
Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/446 (55%), Positives = 326/446 (73%), Gaps = 4/446 (0%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L VQLT+SM ++ ++ A+ P+IV++TPGC+ C++ G + + S +SL LVLDEAD
Sbjct: 115 LTAVQLTTSMSSAVVKGAVTRRPNIVVSTPGCVASCIADGTISAPSLKESLATLVLDEAD 174
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV-GDVKD 131
LLLSYGYE+DL+ L +P CQC+LMSAT+S+DVDKLKKL+LH+P LTL EV G KD
Sbjct: 175 LLLSYGYEEDLQKLVLHVPPRCQCILMSATTSADVDKLKKLVLHDPVTLTLTEVDGSTKD 234
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+V+P VQQF + C DKLL++LTL++ EL+QKKALIF N ID +F++KLFLE+FGIKS
Sbjct: 235 DVVPSTVQQFMVRCEAEDKLLHLLTLVRFELIQKKALIFVNAIDTSFKIKLFLEQFGIKS 294
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
A+LNAELPQNSRLHIL+EFN GLFDY+IATDD ++ + + D+ G + K + +
Sbjct: 295 AVLNAELPQNSRLHILKEFNLGLFDYMIATDDGKSDKLETEDQAGGKLKNRKKLKKRI-M 353
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D+EFGVVRG+DFKNV+TV+NF++P+ GY+HRIGRTGRA N G +VS V + +
Sbjct: 354 DAEFGVVRGVDFKNVYTVVNFDLPRTVTGYIHRIGRTGRAGNAGVAVSFVCEGDEGLLSS 413
Query: 312 IKSFV-GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
++ + GD N I PFP + AVESLRYRAEDVA+ VTKI++RE+RA++L+ EIL
Sbjct: 414 LEDVLSGDSGNAGEKRILPFPTITSGAVESLRYRAEDVARGVTKISIREARAKELKMEIL 473
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAM 430
NSE+LKAHFE NP DL LLKHDK LSK+ P HLR VP+YL DA+ A K +K A AA+
Sbjct: 474 NSERLKAHFEDNPADLKLLKHDKPLSKRQPPQHLRSVPEYLRDAEVMAAGKAMKAANAAI 533
Query: 431 GNKNSSRRQGPRRKFRKSDPLKSFSA 456
G + S + R++ + DPLKS
Sbjct: 534 GRPSVSYTK-KRKQNWEQDPLKSIGV 558
>gi|296090645|emb|CBI41044.3| unnamed protein product [Vitis vinifera]
Length = 301
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/292 (81%), Positives = 263/292 (90%), Gaps = 1/292 (0%)
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
FGIKSA+LNAELPQNSRLHILEEFNAGLFDYLIATD +Q KEK+Q+DEG ++ RKS+KH
Sbjct: 1 FGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEPRKSRKH 60
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
K KLDSEFGVVRGIDFKNVHTVINFEMPQNA GYVHRIGRTGRAYN+GASVSLVSPDEM
Sbjct: 61 SKQKLDSEFGVVRGIDFKNVHTVINFEMPQNAPGYVHRIGRTGRAYNSGASVSLVSPDEM 120
Query: 307 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
+I EEIKS +GDDEN++SN IAPFPLL +NAVESLRYRAEDV+KSVTK+AVRESRAQDLR
Sbjct: 121 EILEEIKSILGDDENKESNFIAPFPLLTKNAVESLRYRAEDVSKSVTKLAVRESRAQDLR 180
Query: 367 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA 426
NEILNSEKLKAHFEVN +DLDLLKHDK LSKKP +HLRDVPDYLLD TQEA K+VKLA
Sbjct: 181 NEILNSEKLKAHFEVNQRDLDLLKHDKVLSKKPIPTHLRDVPDYLLDPTTQEASKIVKLA 240
Query: 427 RAAMGNKNSSRRQGPRRKFRKS-DPLKSFSAEPTKRAGKGRMKREGRNGDDT 477
RAAMGN N +RRQG RRKFRKS DPLK+FSAE K+A KG +KR+ ++ DD+
Sbjct: 241 RAAMGNTNPARRQGSRRKFRKSRDPLKTFSAEAPKKAPKGGVKRKEKDNDDS 292
>gi|147797635|emb|CAN71941.1| hypothetical protein VITISV_038912 [Vitis vinifera]
Length = 377
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/322 (68%), Positives = 246/322 (76%), Gaps = 46/322 (14%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
S+ R LA +++A +P GVLQ+ S ++SL+ILVLDEADLLLSYGYEDDLK
Sbjct: 90 SESRNKLAPSAFVLVANTRTLP----AGVLQAASINESLEILVLDEADLLLSYGYEDDLK 145
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
AL+A +PR CQCLLMSATSS+
Sbjct: 146 ALTAHVPRRCQCLLMSATSSA--------------------------------------- 166
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
RDKLLYIL LLKLELVQKK LIFTN+IDMAFRLKLFLEKFGIKSA+LNAELPQNSRL
Sbjct: 167 ---RDKLLYILALLKLELVQKKILIFTNSIDMAFRLKLFLEKFGIKSAVLNAELPQNSRL 223
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
HILEEFNAGLFDYLIATD +Q KEK+Q+DEG ++ RKS+KH K KLDSEFGVVRGIDFK
Sbjct: 224 HILEEFNAGLFDYLIATDGSQPKEKEQADEGSQIEPRKSRKHSKQKLDSEFGVVRGIDFK 283
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 324
NVHTVINFEMPQNA GYVHRIGRTGRAYN+GASVSLVSPDEM+I EEIKS +GDDEN++S
Sbjct: 284 NVHTVINFEMPQNAPGYVHRIGRTGRAYNSGASVSLVSPDEMEILEEIKSILGDDENKES 343
Query: 325 NIIAPFPLLAQNAVESLRYRAE 346
N IAPFPLL +NAVESLRYRAE
Sbjct: 344 NFIAPFPLLTKNAVESLRYRAE 365
>gi|255648393|gb|ACU24647.1| unknown [Glycine max]
Length = 268
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/241 (79%), Positives = 213/241 (88%)
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
FGI+SA+LN ELPQNSRLHILEEFNAGLFDYLIATD +Q+KEKD+ + +V S KS++H
Sbjct: 23 FGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNVGSWKSRQH 82
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
K KLDSEFGVVRGIDFKNV+TVINFEMP++ AGYVHRIGRTGRAYN+GASVSLVS DEM
Sbjct: 83 AKIKLDSEFGVVRGIDFKNVYTVINFEMPESVAGYVHRIGRTGRAYNSGASVSLVSTDEM 142
Query: 307 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
EEI+SFV DDEN+ +N IA FPLL +NAVESLRYRAEDVAKSVT+IAVRESRAQDLR
Sbjct: 143 DTLEEIRSFVRDDENKGTNSIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLR 202
Query: 367 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA 426
NEILNSEKLKAHFE NPKDLDLLKHDK LSK PP HLRDVP+YLLD T+EA +MVKLA
Sbjct: 203 NEILNSEKLKAHFETNPKDLDLLKHDKVLSKNPPPPHLRDVPEYLLDKPTKEAREMVKLA 262
Query: 427 R 427
R
Sbjct: 263 R 263
>gi|384250759|gb|EIE24238.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 631
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 206/506 (40%), Positives = 290/506 (57%), Gaps = 74/506 (14%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A+ CK +++ + + S+ D+ + IV++TPG + + L G L++ SF
Sbjct: 107 AVATRCKADIRVSSLAVDSAAVQRDIFLHIG---QIVVSTPGQVAQALKEGRLRAASFQP 163
Query: 62 -------SLKILVLDEADLLLSY-GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKL 113
L +LVLDEADL+LS GYEDDL+A++ +IPR CQC+LMSATSS +V++L+KL
Sbjct: 164 DERMRRPGLSVLVLDEADLMLSMPGYEDDLRAIAPLIPRSCQCMLMSATSSEEVERLQKL 223
Query: 114 ILHNPYILTLPEVGDVKDEVIPK--------NVQQFWISCSERDKLLYILTLLKLELVQK 165
+LHNP L L +G D ++ F I+C DKLL+ + LLKL LV+K
Sbjct: 224 VLHNPTTLNL--LGSDADGSGAAGPGPGSAAEIEHFQIACDRSDKLLHTMVLLKLGLVRK 281
Query: 166 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 225
K L+F N+I+ FRLKLFLE FGI+SA EFN G+FDYLIATDD
Sbjct: 282 KVLLFVNSINAGFRLKLFLEAFGIRSA----------------EFNKGIFDYLIATDDPA 325
Query: 226 TKEKDQSD-----------------EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+ + + D +G DSRK + K + D+EFGV+RGIDF+ V T
Sbjct: 326 KRLEQEEDAAKPAPLPKPAAVKGRGKGRDRDSRKRGR--KTENDNEFGVIRGIDFQGVKT 383
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD--------- 319
VIN ++P++ YVHR+GRTGRA G ++S+ +P + ++ E+++ +G
Sbjct: 384 VINVDVPESVQTYVHRVGRTGRAGQAGTAISIFTPADSEVREQLEQQLGGQPASTSGTGA 443
Query: 320 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 379
E E + F L + +VE LRYRAED+A+S+TK +++E+RA++LR E+LNS +L+AHF
Sbjct: 444 EEEQQAGLRRFERLTKASVEGLRYRAEDIARSLTKSSIKEARAKELRLELLNSRRLQAHF 503
Query: 380 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR-R 438
E +P DL LLKHDK L+K SHL+ +P YL D R+A GN
Sbjct: 504 EEHPADLALLKHDKPLAKAAAPSHLKHIPAYLKDPAAAS-------GRSASGNAGPGMLP 556
Query: 439 QGPRRKF-RKSDPLKSFSAEPTKRAG 463
Q RRK R DPLK KR G
Sbjct: 557 QKKRRKMERGKDPLKGGFVRAPKRGG 582
>gi|145341038|ref|XP_001415623.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575846|gb|ABO93915.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 583
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 181/417 (43%), Positives = 267/417 (64%), Gaps = 20/417 (4%)
Query: 27 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 86
LR PPD+++ATP + +C G + D L+++VLDEADLLLS+GY DD+K +
Sbjct: 104 LRETAGSPPDVLVATPTRVAECARGGYFPPGALGDGLEMVVLDEADLLLSFGYVDDIKCV 163
Query: 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-------PEVGDVKDEVIPK--- 136
+ RG Q +++SAT S ++++L+ +I H P + + E G+ K K
Sbjct: 164 MKAVKRGTQVMMLSATMSKEIEELRDVIAHKPTTIDVDDEEDVDAEKGEAKAGEGAKPGP 223
Query: 137 NVQQFWISCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 195
+++ + + + D+LLY++ LL+L L +KKAL+F ++ D A RL+LFL KFG+ + L+
Sbjct: 224 DIKHYSLHIPKAHDRLLYVMALLRLGLCKKKALVFVSSADAAVRLRLFLHKFGVPTCALH 283
Query: 196 AELPQNSRLHILEEFNAGLFDYLIATDDTQ-----TKEKDQSDEG-GHVDSRKSKKHPKA 249
ELP NSR HIL+EFN G++D+++A D T+E D +E +R+SKK +
Sbjct: 284 GELPANSRTHILQEFNRGVYDFMVAAADDANMAEPTEEADAVEEQEDKAPTRESKKKKRD 343
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
+ D EFGVVRGIDF+ V+TVINFE+P AA YVHR+GRTGRA N+G +++LV+P E + F
Sbjct: 344 RRDKEFGVVRGIDFQAVNTVINFEVPTTAAAYVHRVGRTGRAGNSGTAITLVAPSEEQSF 403
Query: 310 EEIKSFVGD---DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
I+S + D + ++ PF L + AV++LRYRAED A++V K AV+E+R ++LR
Sbjct: 404 AAIQSKLASAVGDAVAATQVMQPFDRLPKEAVDALRYRAEDAARAVGKTAVKEARVRELR 463
Query: 367 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV 423
E+LNSE+L AHFE N +DL LLKHD L+K P A HL +P YL K++ V
Sbjct: 464 QELLNSERLAAHFEDNAEDLALLKHDTSLAKHPDAKHLSHLPGYLRGGKSRRGAARV 520
>gi|159477789|ref|XP_001696991.1| hypothetical protein CHLREDRAFT_120099 [Chlamydomonas reinhardtii]
gi|158274903|gb|EDP00683.1| predicted protein [Chlamydomonas reinhardtii]
Length = 516
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 184/407 (45%), Positives = 260/407 (63%), Gaps = 10/407 (2%)
Query: 7 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 66
C + ++V + +P + L+ A+A IV++TPG + L G+L + + + L +L
Sbjct: 99 CGADITVRVC--GARLPGAALKRAVATAGHIVVSTPGKIATALREGLLPAAALTSRLAVL 156
Query: 67 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 126
VLDEADLLLSYGYE+DL+ L+ +PR CQC+LMSATSS DV++L+KL+LHNP L L
Sbjct: 157 VLDEADLLLSYGYEEDLQLLAPQVPRSCQCILMSATSSDDVERLQKLVLHNPITLNL--- 213
Query: 127 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 186
C DKLL+++ LL+L L +KK L+F NT+D RL+LFLE
Sbjct: 214 -AAAGAGAAGTGAGAEEGCPRPDKLLHVMALLRLGLCRKKVLLFVNTVDEGVRLRLFLEA 272
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
FG++ A+LNAELP NSR HIL FN GLFD+LIATDD + G R +K
Sbjct: 273 FGVRPALLNAELPLNSRSHILSSFNRGLFDFLIATDDKAGARLGKDGSG----KRGAKGG 328
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
A+ D+EFGV RGIDFK V TVIN++ P + GYVHR+GRTGRA +G ++SL +P
Sbjct: 329 DGARKDAEFGVTRGIDFKGVRTVINYDPPSSLQGYVHRVGRTGRAGESGTAISLFTPQHS 388
Query: 307 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
++ ++ + G + P+ L+Q VE+LRYR EDVA+ +TK ++E+RA++L+
Sbjct: 389 ELNDDEGAGAGAGGKGRDAALRPYGRLSQAQVEALRYRGEDVARGITKAVIKEARAKELK 448
Query: 367 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLD 413
NE+L SE+LK +FE + + LL+HDK L+ P A+HL+ +P YL D
Sbjct: 449 NELLTSERLKEYFEDHAAEKALLRHDKPLAAAPAAAHLKHMPAYLKD 495
>gi|303273436|ref|XP_003056079.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462163|gb|EEH59455.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 598
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 278/477 (58%), Gaps = 31/477 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAG-PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
L+ +LT S A L AG PP+I+++TP + C+ G ++ + L+ VLDEA
Sbjct: 111 LRAGELTCSGSADVLPRNFAGVPPEILVSTPSRVAACIRGGKFPPRALNSGLEFFVLDEA 170
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP-----EV 126
DLLLS+GYEDD++ ++ RGCQC+L+SATS D+ KLK ++LHNP + +
Sbjct: 171 DLLLSFGYEDDIRCIADATERGCQCMLVSATSPDDLSKLKAIVLHNPVNVDIALENNFVS 230
Query: 127 GDVKDEVIPKN-------VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
G VK+E + + + + E+DKLLY + LL+L L +KK+L+F ++ D A R
Sbjct: 231 GRVKEEQVTTGKSAVMPLISHYALEILEKDKLLYCMALLRLGLCKKKSLVFVSSPDAAVR 290
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----TQTKEKDQSDE 234
L+LFL KFGI +L+ ELP NSR HIL EFN G++DY+IA D D D
Sbjct: 291 LRLFLHKFGIPCCVLHEELPANSRAHILHEFNRGVYDYMIAAADDLSSSISVVNDDNKDF 350
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
H K K++ + +EFGVVRGIDFK+VHTV+N ++P +A+ Y+HR+GRTGRA
Sbjct: 351 TKHT---KRKRNAMSHAQTEFGVVRGIDFKDVHTVLNLDVPISASDYIHRVGRTGRAGQP 407
Query: 295 GASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--PFPLLAQNAVESLRYRAEDVAKSV 352
G +++L +P + E++ S ++ + IA P+ +L + AVE+LRYRAED A++V
Sbjct: 408 GTAITLTTPKNARALEDMLSRHSVSRHDTRSAIALMPYKMLRREAVEALRYRAEDAARAV 467
Query: 353 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+ AVRE+R ++LR E+LNSE+L AHF+ NP DL LLK L HL +P Y+
Sbjct: 468 GRTAVREARLRELRAELLNSERLAAHFDGNPTDLALLKRASCLISHQEQPHLCHLPSYIR 527
Query: 413 DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKR 469
K V + A G KN +G + +D + EP++ K + R
Sbjct: 528 SQK-------VTCSSAKTGKKN-KHTEGEKLTDETTDEIHDDHDEPSEYLKKRKTSR 576
>gi|28273387|gb|AAO38473.1| putative RNA helicase, 5'-partial [Oryza sativa Japonica Group]
Length = 299
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 185/304 (60%), Positives = 234/304 (76%), Gaps = 10/304 (3%)
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
FGI+S++LNAELPQNSRLHI++ FNA LFDYLIATDD ++KE+ Q+++G DSR S+K
Sbjct: 1 FGIRSSVLNAELPQNSRLHIIQAFNARLFDYLIATDDNKSKEERQANKGNKKDSRVSRKQ 60
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
+ LD+EFGVVRGIDFKNV TV+N++MP + AGYVHR+GRTGRA TGAS+SLVSP E
Sbjct: 61 LQQTLDAEFGVVRGIDFKNVFTVVNYDMPPDPAGYVHRVGRTGRANKTGASISLVSPKEN 120
Query: 307 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
IFE+I++ + D EN D++ I+PFPLL +NAVESLRYRA+DVA+SVT ++E+R QD++
Sbjct: 121 GIFEDIENMLKDVENRDTSCISPFPLLTKNAVESLRYRAQDVARSVTTRDIKEARRQDIK 180
Query: 367 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA 426
NEILNSEKLKAHF+ NP+DLDLLKHDK LS K +HLRDVP+YL+D T+EA +VKL+
Sbjct: 181 NEILNSEKLKAHFDENPRDLDLLKHDKLLSNKEIPAHLRDVPEYLIDPTTKEASNVVKLS 240
Query: 427 RAAMGNKNSSRRQGPRRKF-----RKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHK 481
RAAM RR+ R F R SDPLK+FSAE R +GR +R+G D K K
Sbjct: 241 RAAMDIDKPRRRK--RMGFKGGSGRSSDPLKTFSAEGKSRR-RGRKERDGEQ--DRRKRK 295
Query: 482 KKKS 485
K +S
Sbjct: 296 KVES 299
>gi|432884660|ref|XP_004074527.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Oryzias
latipes]
Length = 558
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 191/486 (39%), Positives = 278/486 (57%), Gaps = 56/486 (11%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L C V +V ++S S R L PD+V+ TP + L+ + S
Sbjct: 102 LTSFCSRDV--RVADISSKADVSSQRPILMEKPDVVVGTPA---RVLAHINAHNLDLQAS 156
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
L++LV+DEADL+ S+G+E DLK+L +P+ Q LMSAT + DV LK+L+LHNP +L
Sbjct: 157 LEVLVVDEADLIFSFGFEADLKSLLCHLPKIYQSFLMSATFTEDVQALKELLLHNPVVLK 216
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
L + + D +QQ+ I C E DK L + TLLKL+LV+ K L+F +D ++RLKL
Sbjct: 217 L-QGSQLPDS---SQLQQYTIKCEEEDKFLLVYTLLKLQLVRGKTLLFVGAVDRSYRLKL 272
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----------TQTKEKDQ 231
FLE+F I + +LN+ELP SR HI+ +FN G +D +IATD+ T+ KEK
Sbjct: 273 FLEQFSIPACVLNSELPVQSRCHIITQFNQGFYDIIIATDEQSLSPPAGSSQTKGKEKKN 332
Query: 232 SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 291
+D+GG KAK D EFGV RG+DF+NV VINF+ P Y+HR+GRT RA
Sbjct: 333 ADKGG-----------KAK-DKEFGVSRGVDFQNVANVINFDFPTTVESYIHRVGRTARA 380
Query: 292 YNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKS 351
N G ++S +S E+ + E++ + D E +++ P+ + +E RYR D ++
Sbjct: 381 DNQGTALSFISHTELPLLVEVEEALSTDNAE--SVLKPYQFRMEE-IEGFRYRCRDAMRA 437
Query: 352 VTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 411
VTK AVRE+R ++++ E+LNSEKLK +F+ NP+DL LL+HDKDL H++++PDYL
Sbjct: 438 VTKQAVREARLKEIKQELLNSEKLKTYFDDNPRDLQLLRHDKDLHPAVVKPHMKNIPDYL 497
Query: 412 LDAKTQEACKMVKLARAAMGNKNSSRRQGP-----RRKFRKSD----PLKSFSAEPTKRA 462
+ + + G + R + P R F+K+D PLKSF R
Sbjct: 498 IPQTLRGVVNPLS------GRRKRWRVKPPAEGVARSSFKKNDPSRNPLKSF------RY 545
Query: 463 GKGRMK 468
+GR K
Sbjct: 546 TRGRNK 551
>gi|308799543|ref|XP_003074552.1| RNA helicase (ISS) [Ostreococcus tauri]
gi|116000723|emb|CAL50403.1| RNA helicase (ISS) [Ostreococcus tauri]
Length = 1934
Score = 327 bits (838), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 182/423 (43%), Positives = 273/423 (64%), Gaps = 23/423 (5%)
Query: 21 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 80
S S LR PP+I+++TP + +C+ G + + L+ +VLDE DLLLS+GY
Sbjct: 127 SAGTSVLRETAGSPPEILVSTPARVAECVRGGYFPPGALEEELETVVLDEVDLLLSFGYV 186
Query: 81 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL-------TLPEVGDVKDEV 133
DD+K++ + RG + +++SAT S +V++L+ ++ H P + + E GD +D+
Sbjct: 187 DDIKSVMKPVKRGTRVMMLSATLSPEVEELRDVVAHKPTTIDVEDEEAAMKEEGDDQDDG 246
Query: 134 IPK--NVQQFWISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
P N+ + + ++ D+LLY + LL+L L +KK L+F + D A RL+LFL KFG+
Sbjct: 247 KPSAPNISHYSLEIAKSSDRLLYTMALLRLGLCKKKVLVFVSNADAAVRLRLFLHKFGVP 306
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----TQTKEKDQSDEGGHVDSRKSKK 245
+ L++ELP NSR HIL+EFN G++D+++A D T+ +E+++ D+ +R+SKK
Sbjct: 307 TCALHSELPANSRAHILQEFNRGVYDFMVAAADDARVATEVEEEEEEDKA---PTRESKK 363
Query: 246 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
K + D EFGVVRGIDF+ V TVINFE+P AA YVHR+GRTGRA +G ++++VSP E
Sbjct: 364 KKKDRRDKEFGVVRGIDFQAVGTVINFEVPATAAAYVHRVGRTGRAGKSGTAITIVSPTE 423
Query: 306 MKIFEEIK----SFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
+ F++I+ S VGD + +I PF L + AV++LRYRAED A++V K AV+E+R
Sbjct: 424 EEAFKQIQEDLVSTVGDTVAA-TQVIQPFDRLPKEAVDALRYRAEDAARAVGKTAVKEAR 482
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
++L+ E+LNSE+L AHFE N DL LLKHD LSK P A HL +P YL K + +
Sbjct: 483 VRELKQELLNSERLAAHFEDNADDLALLKHDSSLSKNPDAKHLSHLPGYLRGTKKRGDSR 542
Query: 422 MVK 424
V+
Sbjct: 543 AVE 545
>gi|156407059|ref|XP_001641362.1| predicted protein [Nematostella vectensis]
gi|156228500|gb|EDO49299.1| predicted protein [Nematostella vectensis]
Length = 507
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 172/383 (44%), Positives = 241/383 (62%), Gaps = 13/383 (3%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKS--FSDSLKILVLDEADLLLSYGYEDDLKALSA 88
L PDIV+ TP + G +Q+K+ DSL++LV+DEADL+ SYGYEDDLK L +
Sbjct: 130 LMDKPDIVVGTPSGI-----LGHIQAKNMDLKDSLQMLVIDEADLVFSYGYEDDLKVLLS 184
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
+P+ Q LMSAT + DV LKKL+LHNP L L E +D+ + Q+ I C
Sbjct: 185 HLPKIYQAFLMSATLTDDVKALKKLVLHNPVTLKLNESQLPEDD----RLVQYLIKCEPD 240
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
DK L I TLLKL LV+ K L+F N ID +RLKLFLE+F IK+ +LN+ELP NSRLHI+E
Sbjct: 241 DKFLLIYTLLKLRLVRGKTLLFVNGIDRCYRLKLFLEQFSIKACVLNSELPHNSRLHIVE 300
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
EFN ++DY+IA+D+ S + S + K D E+GV RGIDF+ V
Sbjct: 301 EFNRDVYDYIIASDEASLDLAPSSRILAFFFYKISFIFRRKK-DKEYGVARGIDFQGVEN 359
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
VINF+ P Y+HR+GRT R ++G ++S V+ + + + + + + D +
Sbjct: 360 VINFDFPSTVEAYIHRVGRTARGDSSGTALSFVTHSDNTVISKAEERLAQETGSDKEVFK 419
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
PF + +E RYRA D ++VTK AV+E+R ++++ EILNSEKLKA+FE NP+DL +
Sbjct: 420 PFQFRMEE-IEGFRYRARDAIRAVTKTAVKEARLKEIKREILNSEKLKAYFEDNPRDLQV 478
Query: 389 LKHDKDLSKKPPASHLRDVPDYL 411
L+HDK+L +H+++VPDYL
Sbjct: 479 LRHDKELHPAKVQAHMKNVPDYL 501
>gi|242780444|ref|XP_002479596.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces stipitatus
ATCC 10500]
gi|218719743|gb|EED19162.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces stipitatus
ATCC 10500]
Length = 620
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 192/502 (38%), Positives = 282/502 (56%), Gaps = 63/502 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + S RA LA PDI+I+TP + ++ L D L+ LV+DEAD
Sbjct: 129 VRSVNLTQKVSDSVQRAMLADVPDIIISTPARVVSNVNNSALSL----DHLRQLVIDEAD 184
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYEDD+ AL+ +PRG Q LMSAT +S+VD LK L NP IL L E D
Sbjct: 185 LVLSYGYEDDINALAKAVPRGVQTFLMSATLTSEVDTLKGLFCRNPVILKLTEAEDEGG- 243
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF ID +RLKLFLE+FGIKS
Sbjct: 244 ----GISQFAVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRCYRLKLFLEQFGIKSC 299
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---TKE--------------------- 228
+LN+ELP NSR+H+++EFN G++D +IA DD + TK+
Sbjct: 300 VLNSELPANSRIHVVQEFNKGVYDIIIAADDQEVLGTKKIKKTAAVKNADSNEVDDDAEA 359
Query: 229 --KDQSDEGGHVDSRKSKKHPKAKLDS---EFGVVRGIDFKNVHTVINFEMPQNAAGYVH 283
++ SD+ D S + K KL ++G+ RGIDF+NV V+NF++P + Y H
Sbjct: 360 EIEESSDDEVQPDESASTSNKKQKLSGKQKDYGISRGIDFQNVACVLNFDLPTTSKSYTH 419
Query: 284 RIGRTGRAYNTGASVSLVSPDE------------MKIFEEIKSFVGDDENEDSNIIAPFP 331
RIGRTGRA TG ++S V P E K E + S + + + + + P+
Sbjct: 420 RIGRTGRAGKTGMALSFVVPKEEYGKHKPTSYPTAKHDEAVLSKIIKRQGKLGHEVRPYH 479
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
+ VES RYR D ++VT++A++E+RA+++R E++ SEKL+ HFE NP +L L+H
Sbjct: 480 FEMKQ-VESFRYRMTDALRAVTRLAIQEARAREIRQELIKSEKLRRHFEENPDELRHLRH 538
Query: 392 DKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG---------NKNSSRRQGPR 442
D ++ HL+ VPDYL+ +K ++ R +G K R +G
Sbjct: 539 DGEIRAVRIQPHLKHVPDYLMPSKGKQGLMAEDSQRHGVGIGKTSENRIRKARERNRGKG 598
Query: 443 RK---FRKSDPLKSFSAEPTKR 461
R+ +K+DPLK+F+A+ K+
Sbjct: 599 RRGAVGKKADPLKNFNAKGRKK 620
>gi|212526270|ref|XP_002143292.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces marneffei
ATCC 18224]
gi|210072690|gb|EEA26777.1| ATP dependent RNA helicase (Dbp9), putative [Talaromyces marneffei
ATCC 18224]
Length = 621
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 193/503 (38%), Positives = 282/503 (56%), Gaps = 64/503 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + S RA LA PDIVI+TP + ++ L D L LV+DEAD
Sbjct: 129 IRPVNLTQKVSDSVQRAMLADVPDIVISTPARVVSNVNNSALSL----DHLTQLVIDEAD 184
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYEDD+ AL+ +PRG Q LMSAT +S+VD LK L NP IL L E D
Sbjct: 185 LVLSYGYEDDINALAKAVPRGVQTFLMSATLTSEVDTLKGLFCRNPVILKLTETEDEGG- 243
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF ID +RLKLFLE+FGIKS
Sbjct: 244 ----GISQFAVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRCYRLKLFLEQFGIKSC 299
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT------------KEKDQS-------- 232
+LN+ELP NSR+H+++EFN G++D +IA DD + K D +
Sbjct: 300 VLNSELPANSRIHVVQEFNKGVYDIIIAADDQEVLGTKKIKKTSAIKNADNNENDEDAEA 359
Query: 233 -------DEGGHVDSRKSKKHPKAKLDS---EFGVVRGIDFKNVHTVINFEMPQNAAGYV 282
+E ++ +SK + K KL ++G+ RGIDF+NV V+NF++P + Y
Sbjct: 360 ELEESSDEEAQPAENAQSKSNKKQKLSGKQKDYGISRGIDFQNVACVLNFDLPTTSKSYT 419
Query: 283 HRIGRTGRAYNTGASVSLVSPDE------------MKIFEEIKSFVGDDENEDSNIIAPF 330
HRIGRTGRA TG ++S V P E K E + + + +++ + + P+
Sbjct: 420 HRIGRTGRAGKTGMALSFVVPKEEYGKHKPTSYPTAKHDEAVLAKIIKRQSKLGHEVKPY 479
Query: 331 PLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 390
+ VES RYR D ++VT++A++E+RA+++R E++ SEKL+ HFE NP +L L+
Sbjct: 480 HFEMKQ-VESFRYRMTDALRAVTRLAIQEARAREIRQELIKSEKLRRHFEENPDELRHLR 538
Query: 391 HDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG------NKNSSRRQGPRRK 444
HD ++ HL+ VPDYL+ +K ++ R +G N+ R+ R K
Sbjct: 539 HDGEIRAVRIQPHLKHVPDYLMPSKGKQGLMKEDSQRHGVGIGKTSENRIRKARERNRAK 598
Query: 445 FR------KSDPLKSFSAEPTKR 461
R KSDPLK+F+A+ K+
Sbjct: 599 GRRGVAGKKSDPLKTFNAKGRKK 621
>gi|330798693|ref|XP_003287385.1| hypothetical protein DICPUDRAFT_32400 [Dictyostelium purpureum]
gi|325082590|gb|EGC36067.1| hypothetical protein DICPUDRAFT_32400 [Dictyostelium purpureum]
Length = 634
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 191/482 (39%), Positives = 275/482 (57%), Gaps = 49/482 (10%)
Query: 7 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 66
C + VVQL + + L PD++I+TP + + L +Q +S SL IL
Sbjct: 114 CYSSHLVSVVQLGGDKSIDEQKGLLRDIPDVIISTPTRLVQHLQNKTIQLQS---SLDIL 170
Query: 67 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 126
V+DEADL+LSYG+++D+ + + +P+ CQC LMSAT + V++LKKL+LH P IL L E
Sbjct: 171 VIDEADLVLSYGHQEDINIIKSFLPKVCQCFLMSATLTQQVEELKKLVLHTPAILKLEE- 229
Query: 127 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 186
D+ I N+ ++ I C+E DK L I +LL+L L+Q K L F N + ++LKLF E+
Sbjct: 230 ----DKAIQTNLTEYSIKCAETDKFLLIFSLLRLRLMQGKILFFVNDTNNCYKLKLFFER 285
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKD---------------- 230
F IK A+LN+ELP NSR +I+ +FN G+FDYLIATD++ +
Sbjct: 286 FHIKCAVLNSELPINSRHNIILQFNKGIFDYLIATDESFSSTTSTLKEEELEDKDEEEME 345
Query: 231 QSDEGGHVDSR--------KSKKHPKA--KLDSEFGVVRGIDFKNVHTVINFEMPQNAAG 280
S +G D KS K K+ K+D E+GV RGIDFKNV V+NF+ P+
Sbjct: 346 DSIDGEEEDIENLIKKNITKSNKSNKSDPKVDKEYGVARGIDFKNVDIVVNFDFPRTIKN 405
Query: 281 YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVES 340
Y+HRIGRT R N G ++S V+ + + +++ G E + PF NA+E
Sbjct: 406 YIHRIGRTARGTNKGIALSFVTFNNENLLSKVQKTRG----EAGYNLKPFE-FKMNAIEG 460
Query: 341 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPP 400
RYR EDV ++V +++E+R +L+ E+LN+EKLK+HF NP+DL LKHD L KK
Sbjct: 461 FRYRVEDVLRNVNVRSIKEARKSELKQEVLNNEKLKSHFSENPQDLLALKHDTALIKKQV 520
Query: 401 ASHLRDVPDYLLDAKTQEACKMVKLARAAMGNK-------NSSRRQGPRRKFRKSDPLKS 453
++HL+ VP+YLL + + KL N N S++ RR RK D LK+
Sbjct: 521 SNHLKYVPEYLLPQQFKSHVDQ-KLEVIPSTNNPEKVRGVNYSKKTEQRR--RKKDILKT 577
Query: 454 FS 455
S
Sbjct: 578 LS 579
>gi|348504260|ref|XP_003439680.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Oreochromis niloticus]
Length = 560
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 194/465 (41%), Positives = 277/465 (59%), Gaps = 29/465 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++S + S R L PD+V+ TP + L+ Q+ SL++LV+DEAD
Sbjct: 110 IRVADISSKVDLSTQRPILMEKPDVVVGTPS---RVLAHLNAQNLVLRSSLEMLVVDEAD 166
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+ S+G+E DLK L +P Q LMSAT + DV LK+L+LHNP IL L + + D
Sbjct: 167 LIFSFGFESDLKNLLCHLPNIYQSFLMSATFNEDVQTLKELLLHNPVILKL-QGSQLPDS 225
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+QQ+ I C E DK L + TLLKL LV+ K L+F T+D +RLKLFLE+FGI +
Sbjct: 226 ---SQLQQYSIKCEEEDKFLLVYTLLKLCLVKGKTLLFVGTVDRCYRLKLFLEQFGIPAC 282
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDD---TQTKEKDQSDEGGHVDSRKSKKHPKA 249
+LN+ELP SR HI+ +FN G +DY+IATD+ T+T + Q+ + +K++K
Sbjct: 283 VLNSELPVQSRCHIIAQFNQGFYDYIIATDEQSLTETAAEPQTT--AGKEKKKTQKKGGK 340
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E+GV RG+DF+NV VINF+ P+ Y+HR+GRT RA N G ++S VS E+ +
Sbjct: 341 AKDKEYGVSRGVDFQNVANVINFDFPKTVESYIHRVGRTARADNPGTALSFVSHTELGLL 400
Query: 310 EEI-KSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
E+ ++ GD+ N + P+ + +E RYR D +SVTK AV+E+R ++++ E
Sbjct: 401 SEVEEALTGDETNSP---LKPYEFKMEQ-IEGFRYRCRDAMRSVTKQAVKEARLKEIKQE 456
Query: 369 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV--KLA 426
+LNSEKLK +FE NP+DL LL+HDKDL HL++VP+YL+ EA K V L
Sbjct: 457 LLNSEKLKTYFEDNPRDLQLLRHDKDLHPAVVKPHLKNVPEYLIP----EALKGVVHPLT 512
Query: 427 RAAMGNKNSSRRQGP-RRKFRKS----DPLKSFSAEPTK-RAGKG 465
K R G + F+K+ +PLKSF K R GK
Sbjct: 513 SRRRRRKEIQRPGGVIKSSFKKNIQGKNPLKSFQYTGGKNRKGKA 557
>gi|255070509|ref|XP_002507336.1| helicase [Micromonas sp. RCC299]
gi|226522611|gb|ACO68594.1| helicase [Micromonas sp. RCC299]
Length = 605
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/431 (40%), Positives = 267/431 (61%), Gaps = 22/431 (5%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAALAG-PPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
LC+ L+ +L +S A ++ AG PP+I++ TP + +C+ G + + L
Sbjct: 113 LCQCAPTLRAGELPASGCAPEILREFAGAPPEILVGTPARVVECIRCGFFPPDALNSGLD 172
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL- 123
+LVLDEAD+LLS+GY D+K ++A + RGCQ +L+SAT++ ++ ++ L+LHNP L L
Sbjct: 173 LLVLDEADMLLSFGYNHDIKCIAAEVQRGCQSILLSATTNEELTGMQSLVLHNPVQLDLG 232
Query: 124 ---------PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTI 174
E V+ P+ + + I DKLLY + L +L L +KK L+F +
Sbjct: 233 SLNRNRCGQTETNAVQPVQSPR-ISHYIIKLHTDDKLLYCMALFRLGLCEKKTLVFVSHS 291
Query: 175 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT-DDTQTKEKDQSD 233
D A RL+LFL KF I L+ ELP NSR HIL+E+N G++D +IA DD + K +S+
Sbjct: 292 DAAIRLRLFLAKFSISCCALHHELPYNSRAHILQEYNRGVYDCMIAVADDISARTKKESE 351
Query: 234 ------EGGHVDSRKSKKHPKAKLDS--EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
+G H+++ + K + D+ +FGVVRGIDFK V TVINF++P +A+ YVH+I
Sbjct: 352 ARDLMLDGKHLNASEEVKRFGRQKDAHKDFGVVRGIDFKQVRTVINFDVPSDASAYVHQI 411
Query: 286 GRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD-DENEDSNIIAPFPLLAQNAVESLRYR 344
GRTGR G++++ VS E++ E I+ + + EN S + PF LA VE+LRYR
Sbjct: 412 GRTGRGGEHGSAITFVSLSEVRKIEAIQQDLKEYGENGSSLVFKPFGKLAIEDVEALRYR 471
Query: 345 AEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHL 404
AEDV+++V + +VR++R +++R E+LNS++L AHF+ NP +L LLKHD L+K+ HL
Sbjct: 472 AEDVSRTVGRASVRDARVREIRTELLNSDRLAAHFDENPDELILLKHDFRLAKQRALPHL 531
Query: 405 RDVPDYLLDAK 415
+P+YL K
Sbjct: 532 NHLPNYLRGGK 542
>gi|410903870|ref|XP_003965416.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Takifugu
rubripes]
Length = 563
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 191/469 (40%), Positives = 272/469 (57%), Gaps = 34/469 (7%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++ S R L PDIV+ TP + L+ Q+ SL++LV+DEAD
Sbjct: 110 VRVADVSGKADVSTQRPILMEKPDIVVGTPS---RILAHLNAQNLLLHSSLEMLVVDEAD 166
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E DLK L +P+ Q LMSAT S DV LK+L+LHNP IL L + + D
Sbjct: 167 LLFSFGFEADLKNLLCHLPKIYQSFLMSATLSEDVQSLKELLLHNPIILKL-QGSQLPDS 225
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+QQ+ I+C E DK L I TLLKL LVQ K L+F +D ++RLKLFLE+FGI +
Sbjct: 226 ---SQLQQYSINCEEEDKFLLIYTLLKLRLVQGKTLLFVGAVDRSYRLKLFLEQFGIPTC 282
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDD------TQTKEKDQSDEGGHVDSRKSKKH 246
+LN+ELP SR HI+ +FN G +DY+IA D+ + ++ G + S+K
Sbjct: 283 VLNSELPVGSRCHIISQFNQGFYDYIIAADEESLAVPAEGAASAEAAAGKGKKKKNSEKA 342
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
K+K D EFGV RG+DF+NV VINF+ P Y+HR+GRT RA N G ++S +S E+
Sbjct: 343 GKSK-DKEFGVSRGVDFQNVSNVINFDFPTTVESYIHRVGRTARADNPGTALSFISHKEV 401
Query: 307 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
+ +++ + D + +++ P+ + +E RYR D +SVTK AVRE+R ++++
Sbjct: 402 ALLSDVEEALTGDHS--GSVLKPYKFKMEE-IEGFRYRCRDAMRSVTKQAVREARLKEIK 458
Query: 367 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA 426
E+LNSEKLK +FE NP+DL LL+HDKDL HLR++PDYL+ +
Sbjct: 459 QELLNSEKLKTYFEDNPRDLQLLRHDKDLHPAVVKPHLRNLPDYLIPDTLRNVIN----- 513
Query: 427 RAAMGNKN-SSRRQGPR--------RKFRKSDPLKSFSAEPTK-RAGKG 465
+ KN R++ P+ + R DPLKSF K R GK
Sbjct: 514 --PLSCKNRRKRKEKPKLGVVKTSFKNTRGKDPLKSFRYTRGKNRKGKA 560
>gi|307107419|gb|EFN55662.1| hypothetical protein CHLNCDRAFT_23258 [Chlorella variabilis]
Length = 611
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 197/456 (43%), Positives = 264/456 (57%), Gaps = 63/456 (13%)
Query: 19 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 78
TS + LRAA A +V+ TP + + L GVL + L++LVLDEADLLLSYG
Sbjct: 106 TSVAGDAPLRAACATAGQLVVTTPAKLAQALREGVLTPHMLEERLQVLVLDEADLLLSYG 165
Query: 79 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-----PEVGDVKDEV 133
YE+D++AL+ +PR QCLLMSATSS DVD+L KL+LH+P L L E G+++
Sbjct: 166 YEEDVQALAPHVPRSTQCLLMSATSSEDVDRLTKLVLHSPVALNLLGQATGEGGEIEHFR 225
Query: 134 I--PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ P + +KLL++L LLKL LVQ+K L+F N+ D R++LFLE FG+ +
Sbjct: 226 VDLPAGCGSGGAATEAAEKLLHLLALLKLNLVQRKVLVFVNSADSGMRVRLFLEAFGVPA 285
Query: 192 AILNAELPQNSRLHIL------------EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239
A+L+AELP NSR HIL +EFN GLFDYLIATDD + D S G
Sbjct: 286 AVLSAELPLNSRHHILQARPRQGWPSAAQEFNRGLFDYLIATDDVHAGDADGST--GSSK 343
Query: 240 SRKSKKHPKA--------------KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
++ KK + + + EFGV RGIDFK V TVINFEMP + GYVHR+
Sbjct: 344 QQRQKKGSRGDAGGGKGAVGGKRQRKEEEFGVTRGIDFKGVRTVINFEMPGSTKGYVHRV 403
Query: 286 GRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED---------------------S 324
GRTGRA G ++SL++P + + E+ + + D +
Sbjct: 404 GRTGRAGQAGTAISLLAPSDAPLAAELTAMLRDSGGGEAGGDHPAAAAAAGGAAAAAATQ 463
Query: 325 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 384
+ P L + AVE LRYRAEDVA+S+TK A RA++L+NE+LNS++L A FE +P
Sbjct: 464 AGLQPHQRLTKAAVEGLRYRAEDVARSITKNA----RAKELKNELLNSQRLAAFFEEHPS 519
Query: 385 DLDLLKHDKDL---SKKPPASHLRDVPDYLLDAKTQ 417
DL+LLKHDK L A+HL+ +P YL D Q
Sbjct: 520 DLNLLKHDKPLAASGAAAAAAHLKHIPAYLRDPTLQ 555
>gi|3776007|emb|CAA09206.1| RNA helicase [Arabidopsis thaliana]
Length = 259
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 179/257 (69%), Positives = 214/257 (83%), Gaps = 8/257 (3%)
Query: 206 ILEEFNAGLFDYLIATDD-TQTKEKDQSDEG-GHVDSRKSKKHPKAKLDSEFGVVRGIDF 263
ILE+FNAGLFDYLIATDD +QTK++ + +G + +++K+ K K KLD+EFGVVRGIDF
Sbjct: 1 ILEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRTKPKLDAEFGVVRGIDF 60
Query: 264 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 323
K VHTVINF+MPQ+ GY+HRIGRTGRAY++G+SVSL+SPDEM+ FE+IKSF+ D+N+D
Sbjct: 61 KKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSFLASDKNKD 120
Query: 324 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 383
+II PFPLL +NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI+NSEKLKAHFE NP
Sbjct: 121 IDIITPFPLLTENAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIINSEKLKAHFEANP 180
Query: 384 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 443
+DLDLL+HDK LSK PA HL+D+P+YL+DAKTQEA KMVKLARAAMGN S G R
Sbjct: 181 RDLDLLRHDKPLSKTAPAPHLKDIPEYLVDAKTQEASKMVKLARAAMGNTRRSGGGGGRN 240
Query: 444 KF------RKSDPLKSF 454
+ SDPLK+F
Sbjct: 241 NKNKKRSRKGSDPLKTF 257
>gi|378733411|gb|EHY59870.1| ATP-dependent RNA helicase dbp9 [Exophiala dermatitidis NIH/UT8656]
Length = 601
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 187/500 (37%), Positives = 292/500 (58%), Gaps = 57/500 (11%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
++L C VQ + LT + + L+A L PDI+++TPG + + L++G + ++ S
Sbjct: 119 VSLSAFCTKDVQ--SLNLTQRLSDAVLQAVLQDSPDIIVSTPGRVTQYLNSGRISLENIS 176
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
LV+DEAD++LSYGYEDD+ +++++PRG Q L+SAT + +V++LK + + +
Sbjct: 177 H----LVIDEADIVLSYGYEDDINTVASLLPRGVQTFLVSATLTPEVEELKGMFCRDATV 232
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
+ + E + +E+ Q+ + C E +K L I L KL LV+ K++IF +D ++RL
Sbjct: 233 VKIDEKEEKGEEIT-----QYVVRCGEDEKFLLIYVLFKLRLVKGKSIIFVQDVDRSYRL 287
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT-------------- 226
KLFLE+FGIKS +LNAELP NSRLH+++EFN GL+D LIA DD +
Sbjct: 288 KLFLEQFGIKSCVLNAELPVNSRLHVVQEFNKGLYDILIAADDQEVLGGIVRRPKTRAHD 347
Query: 227 KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIG 286
+E + SDE + +KK + + ++GV RGIDF+NV VINF++PQ + Y HRIG
Sbjct: 348 QENEMSDEDDGTEEHVAKKSRISNNEKDYGVSRGIDFQNVACVINFDLPQTSKSYTHRIG 407
Query: 287 RTGRAYNTGASVSLVSP----------------DEMKIFEEIKSFVGDDENEDSNIIAPF 330
RT RA G ++S V P ++ ++ E+I + NE + P+
Sbjct: 408 RTARAGKAGMALSFVIPKDRYGKHKATSIPSAKNDERVLEKIIARQAKKGNE----VKPY 463
Query: 331 PL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLL 389
+AQ V++ RYR D ++VT+ AV E+RA++++ E++ SEKL+ HFE NP+DL L
Sbjct: 464 HFDMAQ--VDAFRYRMNDALRAVTRAAVHEARAREIKQELIKSEKLRKHFEENPEDLRHL 521
Query: 390 KHDKDLSK-KPPASHLRDVPDYLLDAKTQEACKMVKLARAAM------GNKNSSRRQGPR 442
+HD + S SHL+ VPDYL+ + ++ + + G K ++++G R
Sbjct: 522 RHDGEHSAIVRHQSHLKHVPDYLMPPQGRKGVSAEDIGFVGLRKLDADGKKKDNKKRGGR 581
Query: 443 R-KFR-KSDPLKSFSAEPTK 460
+ K R K DPLKSFSA K
Sbjct: 582 KGKPRGKVDPLKSFSARERK 601
>gi|95132450|gb|AAI16543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Danio rerio]
gi|182891866|gb|AAI65407.1| Ddx56 protein [Danio rerio]
Length = 557
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 273/470 (58%), Gaps = 26/470 (5%)
Query: 10 QVQLKVVQLTSSMPASDLRAA--------------LAGPPDIVIATPGCMPKCLSTGVLQ 55
QVQ + QLT + D+R A L PDIV++TP + ++ LQ
Sbjct: 94 QVQTMIRQLTVYC-SRDVRVADISGKADLSAQKPILMEKPDIVVSTPSRIQAHINAQNLQ 152
Query: 56 SKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLIL 115
S SL++LV+DEADLL S+G+E DLK L +P+ Q LMSAT + DV LK+L+L
Sbjct: 153 LHS---SLEMLVIDEADLLFSFGFEADLKNLLCHLPKIYQAFLMSATLNDDVQALKELVL 209
Query: 116 HNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTID 175
HNP L L + + D +QQF I C E DK L I T+LKL L+Q K L+F + +D
Sbjct: 210 HNPVTLKL-QGSQLPDS---SQLQQFSIKCEEEDKFLLIYTMLKLGLIQGKTLLFVSDVD 265
Query: 176 MAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEG 235
++RLKLFLE+F I + +LN+ELP +SR HI+ +FN G ++Y+IA+D+ + S +
Sbjct: 266 RSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFNQGFYNYIIASDEQGLESPAGSSQK 325
Query: 236 GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG 295
K K K D E+GV RGIDF NV VINF+ P + Y+HR+GRT RA N G
Sbjct: 326 TQEKGNKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTSVESYIHRVGRTARADNPG 385
Query: 296 ASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKI 355
++S +S E+ + E+++ + D N + ++ P+ + +E RYR D +SVTK
Sbjct: 386 TALSFISHAELSMLSEVENALTGDSN--NCVLKPYEFRMEE-IEGFRYRCRDGMRSVTKQ 442
Query: 356 AVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 415
AV+E+R ++++ E+LNSEKLK +FE NP+DL LL+HDKDL H+++VP+YL+
Sbjct: 443 AVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLRHDKDLHPAIIKPHMKNVPEYLIPTA 502
Query: 416 TQEACKMVKLARAAMGNKNSSRRQGPRRK-FRKSDPLKSFSAEPTKRAGK 464
+ + R K+S +K +R +PLKSF +R K
Sbjct: 503 LKSLVNPLNQRRKRKKVKSSGVMLSSFKKNYRGRNPLKSFRYAKKRRGEK 552
>gi|291228064|ref|XP_002734002.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 56-like
[Saccoglossus kowalevskii]
Length = 566
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 173/413 (41%), Positives = 250/413 (60%), Gaps = 33/413 (7%)
Query: 20 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 79
S P +R L PDI++ TP + L+ ++ +SL++LV+DEADLL S+GY
Sbjct: 113 SDFPKDSVRPLLIEKPDIIVGTPS---RVLAHIQAKNIYLKESLEMLVIDEADLLFSFGY 169
Query: 80 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-- 137
E+D+K L +P+ Q LMSAT S++V+ LKKL+LHNP IL L E +P++
Sbjct: 170 ENDVKTLLRHLPKIFQAFLMSATLSNEVETLKKLVLHNPVILKLQESQ------LPESDR 223
Query: 138 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 197
+ Q+ I C DK L I TL+KL+L++ K +IF N ID +RLKLFLE+F I S +LN+E
Sbjct: 224 LLQYHIKCKAEDKFLLIYTLIKLKLIRGKTIIFVNKIDRCYRLKLFLEQFSIASCVLNSE 283
Query: 198 LPQNSRLHILEEFNAGLFDYLIATDDT-----------------QTKEKDQSDEGGHVDS 240
LP NSR HI+ + N G +D +IA+D++ T E D+SD
Sbjct: 284 LPVNSRCHIVNQVNEGFYDIVIASDESVLSMPDDKLDELDEIPDATVEADESDNKKKKRK 343
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
K K E+GV RGIDF+NV V+NF+ P Y+HR+GRT R + G ++S
Sbjct: 344 GKKLSKTMMKKVKEYGVSRGIDFQNVSNVLNFDFPPTVDAYIHRVGRTARGFKMGTALSF 403
Query: 301 VSPDEMKIFEEIKSFV-GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 359
V+ E+ + ++ + + GDDE + P+ + +E RYRA+D ++VTK+AV+E
Sbjct: 404 VNYSEIHLLQQAEMILSGDDE---VPAVKPYQFKMEE-IEGFRYRAKDAMRAVTKVAVKE 459
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+R Q+++NEI+NS+KLK +FE NP+DL LL+HDK L SHLR VPDYL+
Sbjct: 460 ARLQEIKNEIMNSQKLKTYFEDNPRDLQLLRHDKVLHPAKVQSHLRHVPDYLV 512
>gi|322700573|gb|EFY92327.1| ATP-dependent RNA helicase dbp9 [Metarhizium acridum CQMa 102]
Length = 612
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 188/482 (39%), Positives = 281/482 (58%), Gaps = 47/482 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V+LT + + R+ L+ PDIVI+TP + + QS D L LVLDEAD
Sbjct: 135 VRAVKLTDKLSDAVQRSLLSTNPDIVISTPARAWYNVKSN--QSSLSLDKLTHLVLDEAD 192
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN--PYILTLPEVGDVK 130
LLLSYGY++DL+ LS IP+G Q ++MSAT ++++D LKK + P +L L E D +
Sbjct: 193 LLLSYGYDEDLENLSWSIPKGIQTIMMSATLTTEIDSLKKTFYRDNAPTLLDLEE-PDAE 251
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
E + Q + C+E +K L + KL+LV+ K +IF +D +RLKLF E+FGI+
Sbjct: 252 GE----GITQLFTKCAEDEKFLLAYIIFKLQLVKGKCIIFVGDVDRCYRLKLFFEQFGIR 307
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT---------KEKDQSDEGGHVDSR 241
S ILN+ELP NSR+H++EEFN ++D +IA+D+ + +E + D+ D+
Sbjct: 308 SCILNSELPVNSRIHVVEEFNRNVYDIIIASDEKEVLGNEEKADEEENHEGDQEEDSDAE 367
Query: 242 KSKKHPK-----AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 296
K ++ PK +K D E+GV RGIDFKNV VINF++P +A+ Y HR+GRT RA G
Sbjct: 368 KEERRPKKKRKASKRDKEYGVSRGIDFKNVAAVINFDLPTSASSYTHRVGRTARAGKAGM 427
Query: 297 SVSLVSPDEMKIFEEIKSFVGDDENEDSNI-------------IAPFPLLAQNAVESLRY 343
++S V P E + + + + + EN++ + I P+ + VE+ RY
Sbjct: 428 ALSFVIPKE-QFRKHMPTSIQSAENDEKVLARITKQQAKKGKEIKPYNFNTKQ-VEAFRY 485
Query: 344 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASH 403
R D ++VTK+AVRE+R ++LR E++ SEKLK +FE NP +++ L+HD +L +H
Sbjct: 486 RMNDALRAVTKVAVREARTRELRQELMKSEKLKRYFEENPSEINHLRHDGELRTARQQAH 545
Query: 404 LRDVPDYLL--DAK---TQEACKMVKLARAA----MGNKNSSRRQGPRRKFRKSDPLKSF 454
L+ +PDYLL D K T+ V L + ++R G R RK DPLK+F
Sbjct: 546 LKHIPDYLLPKDGKKGLTENDIGFVPLRKPGKLRDHRKGKGTKRGGFRVGARKGDPLKTF 605
Query: 455 SA 456
A
Sbjct: 606 KA 607
>gi|326476368|gb|EGE00378.1| ATP-dependent RNA helicase DBP9 [Trichophyton tonsurans CBS 112818]
gi|326484727|gb|EGE08737.1| ATP-dependent RNA helicase DBP9 [Trichophyton equinum CBS 127.97]
Length = 618
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 194/511 (37%), Positives = 280/511 (54%), Gaps = 64/511 (12%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A E C + + LT + + RA LA PDIVI+TP ++ L D
Sbjct: 120 AFSEFCSKDI--RSGNLTQKVSDAVQRALLADLPDIVISTPARAIVNVNNSAL----VLD 173
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
++ +V+DEADLLLSYGYE D++ L+ IPRG Q LMSAT +S+VD LK L +P IL
Sbjct: 174 NISQVVIDEADLLLSYGYEQDMQNLAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPAIL 233
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E D + QF + C+E DK L + KL+LV+ K +IF +D +RLK
Sbjct: 234 KLEEAEDEG-----AGISQFAVKCAEDDKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLK 288
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT-------KEKDQSD- 233
LFLE+FGIKS ILN+ELP NSR+H +EEFN G++D +IA DD + KE +S+
Sbjct: 289 LFLEQFGIKSCILNSELPANSRIHAVEEFNKGVYDIIIAADDQEVIGKIESKKEPSESEV 348
Query: 234 -------------------EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
E S K+KK ++ + ++G+ RGIDF++V V+NF++
Sbjct: 349 PIADGATEENKDLSEPEEVEEKAAPSNKNKKRKRSGKEKDYGISRGIDFQDVACVLNFDL 408
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------KIFEEIK---SFVGDDENEDSN 325
P A Y HRIGRTGRA TG ++S V P E+ IF K S + E +
Sbjct: 409 PTTAKSYTHRIGRTGRAGKTGMALSFVVPSELYGKHKPTIFPPAKNDESVLAKIEKRQAK 468
Query: 326 I---IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 382
+ + P+ + +E RYR D ++VT+IAV+E+RA+++R E++ SEKLK HFE N
Sbjct: 469 MGREVKPYH-FDKKQIEVFRYRMTDALRAVTRIAVQEARAKEIRQELVKSEKLKRHFEEN 527
Query: 383 PKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPR 442
P++L L+HD++L S L++VP+YL+ K + + + + K +R + R
Sbjct: 528 PQELRELRHDQELGSVRVQSQLKNVPEYLMPTKGKSSLTSEDIGFVGLHKKKENRIRQAR 587
Query: 443 RK-------------FRKSDPLKSFSAEPTK 460
+K RK DPLKSF ++ K
Sbjct: 588 QKNRARGRIAKKGGAGRKIDPLKSFKSKVKK 618
>gi|340370804|ref|XP_003383936.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Amphimedon queenslandica]
Length = 545
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 180/472 (38%), Positives = 280/472 (59%), Gaps = 34/472 (7%)
Query: 5 ELCKGQVQ-LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
ELC + +KVV ++ S S R L PD+V+ TP + LS +S ++SL
Sbjct: 98 ELCTCCSRDIKVVCVSQSNAVSSQRTVLLECPDVVVGTPS---RILSHLSGKSLLLTESL 154
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
++ DEADLL SYGYE+D+ + + +P Q +LMSAT + DV LKK++LH P + L
Sbjct: 155 HFVIFDEADLLFSYGYEEDINNIVSFLPSPIQSILMSATLNEDVISLKKVVLHQPVTIKL 214
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
E +D+ + Q+ I C E DK L I +LLKL+L++ K+LIF N I ++LKLF
Sbjct: 215 EESELPQDD----RLTQYHIQCLEDDKFLLIYSLLKLKLIRGKSLIFVNDITRCYKLKLF 270
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKS 243
LE+F IKS +LN+ELP NSR H++E+FN ++DY+IATD+ VD
Sbjct: 271 LEQFFIKSCVLNSELPHNSRCHVIEQFNRDIYDYIIATDEL-------------VDHTHQ 317
Query: 244 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
K K D E+GV RGIDF+ V V+NF+ P N+ Y+HR+GRT R + G +++ VSP
Sbjct: 318 TKKKKKGQDKEYGVSRGIDFQGVVNVVNFDFPPNSKAYIHRVGRTARGNDYGTALTFVSP 377
Query: 304 DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQ 363
E E++ + + + D +++ P+ + +E RYR ++ ++VT++A++E+R +
Sbjct: 378 SEETKLTELQLLLKEQRDFDHDLVQPYK-FKMSEIEGFRYRVQEAVQAVTQLAIKEARLK 436
Query: 364 DLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPAS----HLRDVPDYLLDAKTQEA 419
++R EIL+S++LK HFE NP+DL +L+HD+DL P+S HL+ +P YL+ + +
Sbjct: 437 EIRCEILSSKRLKTHFEDNPRDLQVLRHDRDLL---PSSKVKEHLKYIPPYLVPKALKSS 493
Query: 420 CKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFS-AEPTKRAGKGRMKRE 470
R +G+ N RR+ + + + ++PLK+F TK K KR+
Sbjct: 494 AVE---EREGIGDGNMKRRRAHKVR-QHNNPLKTFKLTNETKLVSKPSKKRK 541
>gi|51467996|ref|NP_001003876.1| probable ATP-dependent RNA helicase DDX56 [Danio rerio]
gi|49619091|gb|AAT68130.1| DEAD/H box 56 RNA helicase/noh61 [Danio rerio]
Length = 557
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 275/470 (58%), Gaps = 26/470 (5%)
Query: 10 QVQLKVVQLTSSMPASDLRAA--------------LAGPPDIVIATPGCMPKCLSTGVLQ 55
QVQ + QLT+ + D+R A L PDIV++TP + ++ LQ
Sbjct: 94 QVQTMIRQLTAYC-SRDVRVADISGKADLSAQKPILMEKPDIVVSTPSRIQAHINAQNLQ 152
Query: 56 SKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLIL 115
S SL++LV+DEADLL S+G+E DLK L +P+ Q LMSAT + DV LK+L+L
Sbjct: 153 LHS---SLEMLVIDEADLLFSFGFEADLKNLLCHLPKIYQAFLMSATLNDDVQALKELVL 209
Query: 116 HNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTID 175
HNP L L + + D +QQF I C E DK L I T+LKL L+Q K L+F + +D
Sbjct: 210 HNPVTLKL-QGSQLPDS---SQLQQFSIKCEEEDKFLLIYTMLKLGLIQGKTLLFVSDVD 265
Query: 176 MAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEG 235
++RLKLFLE+F I + +LN+ELP +SR HI+ +FN G ++Y+IA+D+ + S +
Sbjct: 266 RSYRLKLFLEQFSIPACVLNSELPVHSRCHIISQFNQGFYNYIIASDEQGLESPAGSSQK 325
Query: 236 GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG 295
+K K K D E+GV RGIDF NV VINF+ P + Y+HR+GRT RA N G
Sbjct: 326 TQEKGKKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTSVESYIHRVGRTARADNPG 385
Query: 296 ASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKI 355
++S +S E+ + E+++ + D N + ++ P+ + +E RYR D +SVTK
Sbjct: 386 TALSFISHAELSMLSEVENALTGDSN--NCVLKPYEFRMEE-IEGFRYRCRDGMRSVTKQ 442
Query: 356 AVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 415
AV+E+R ++++ E+LNSEKLK +FE NP+DL LL+HDKDL H+++VP+YL+
Sbjct: 443 AVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLRHDKDLHPAIIKPHMKNVPEYLIPTA 502
Query: 416 TQEACKMVKLARAAMGNKNSSRRQGPRRK-FRKSDPLKSFSAEPTKRAGK 464
+ + R K+S +K +R +PLKSF +R K
Sbjct: 503 LKSLVNPLNQRRKRKKVKSSGVMLSSFKKNYRGRNPLKSFRYAKKRRGEK 552
>gi|320587772|gb|EFX00247.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 613
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 191/476 (40%), Positives = 276/476 (57%), Gaps = 46/476 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ V+LT + + LR+ L+ PDIV++TP +S+ + D L LVLDEAD
Sbjct: 146 ITAVKLTDKVSDAVLRSLLSNMPDIVVSTPSRAWHAVSSSFMTL----DKLTNLVLDEAD 201
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY +DL+ +S +P+G Q +LMSAT +++VD LK ++ NP +L L E D + E
Sbjct: 202 LVLSYGYSEDLEQISGSLPKGIQTILMSATLTTEVDTLKGMLCRNPTLLNLEE-RDAEGE 260
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V Q+ + C+E +K L + KL+LV K L+F + +D +RLKLF E+FGI+S
Sbjct: 261 ----GVTQYVVKCAEDEKFLLAYIIFKLKLVTGKCLVFVSDVDRCYRLKLFFEQFGIRSC 316
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKHP---- 247
ILN+ELP NSR++ +EEFN ++D +IA+D+ + ++Q+DE + + ++ P
Sbjct: 317 ILNSELPVNSRINCIEEFNRNMYDIIIASDEHELLGNEEQADEQATKEGKGAEAQPKKKR 376
Query: 248 --KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
AK D EFGV RGIDFKNV VINF++P ++ Y HRIGRT RA TG ++S V P
Sbjct: 377 KTAAKRDREFGVSRGIDFKNVRAVINFDLPTSSKSYTHRIGRTARAGQTGMALSFVVPSA 436
Query: 306 MKIFEEIKSFVGDDENEDSNI-------------IAPFPLLAQNAVESLRYRAEDVAKSV 352
+ + I + V EN++ + + P+ + VE+ RYR D +SV
Sbjct: 437 L-YRKHIPTTVESAENDEKVLGRITRQQAKLGKEVKPYDFDMKQ-VEAFRYRMNDALRSV 494
Query: 353 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD-LLKHDKDLSKKPPASHLRDVPDYL 411
TK+AVRE+R +++R E+L SEKLK HFE NP +L L +HD +L HL+ VPDYL
Sbjct: 495 TKVAVREARTREIRQELLKSEKLKRHFEENPGELQHLARHDHELRTLRAQPHLKHVPDYL 554
Query: 412 L-----DAKTQEACKMVKLARAAMGNKNSSRR--------QGPRRKFRKSDPLKSF 454
L A T V L R G KN RR + K RK +PL++F
Sbjct: 555 LPRDGKKALTASEVGFVPLRRKD-GKKNDKRRTKYFAKGGKSALSKGRKVNPLRTF 609
>gi|169774379|ref|XP_001821657.1| ATP-dependent RNA helicase dbp9 [Aspergillus oryzae RIB40]
gi|91206553|sp|Q2UFL0.1|DBP9_ASPOR RecName: Full=ATP-dependent RNA helicase dbp9
gi|83769520|dbj|BAE59655.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867816|gb|EIT77056.1| RNA helicase [Aspergillus oryzae 3.042]
Length = 605
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 278/480 (57%), Gaps = 47/480 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R LA PD+V++TP + L + L ++L LV+DEAD
Sbjct: 132 VRSVNLTQKVSDAVQRTMLADYPDLVVSTPARVVTNLGSSALSL----ENLTHLVIDEAD 187
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE+D+ AL+ IPRG Q LMSAT + +VD LK L +P L L + D
Sbjct: 188 LVLSYGYEEDINALAKAIPRGVQTFLMSATLTDEVDTLKGLFCRSPVTLKLEDKDDQG-- 245
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF + +D +R+KLFLE+FGIKS
Sbjct: 246 ---AGVSQFVVRCAEDEKFLLTYVIFKLQLIKGKVIIFVDDVDRCYRVKLFLEQFGIKSC 302
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------TKEKDQSDEGGHVDSR----- 241
+LN+ELP NSR+H+++EFN G++D LIA D+ + +K+ +++E G D
Sbjct: 303 VLNSELPINSRIHVVQEFNKGVYDILIAADEQEVIGARKSKKSKETEEAGSSDEDEGEPE 362
Query: 242 -KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
KSK+ + + ++G+ RGIDF+NV V+NF++P + Y HRIGRTGRA TG ++S
Sbjct: 363 DKSKRRKVSGKEKDYGISRGIDFQNVACVLNFDLPSTSKSYTHRIGRTGRAGKTGMALSF 422
Query: 301 VSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
V P + K E + + + + + + + P+ VE+ RYR D
Sbjct: 423 VIPKDQHGKHRPTSTATSKHDESVLAKIVKRQGKLGHEVKPYHF-EMKQVEAFRYRMTDA 481
Query: 349 AKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVP 408
++VT++AV+E+RA+++R E++ SEKLK HFE NP++L L+HD +L HL+ +P
Sbjct: 482 LRAVTRLAVQEARAREIRQELIKSEKLKRHFEENPEELRQLRHDDELRSARVQPHLKHIP 541
Query: 409 DYLLDAKTQEACKMVKLARAAMGNKNS---------SRRQGPRRKF----RKSDPLKSFS 455
+YL+ AK ++ + + +N +R +G RKF +K DPLK+F+
Sbjct: 542 EYLMPAKGKKGLSSGDVGFVSFRKQNENRIRKAREKNRGKGNGRKFAGVKKKVDPLKTFN 601
>gi|238497093|ref|XP_002379782.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus flavus
NRRL3357]
gi|220694662|gb|EED51006.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus flavus
NRRL3357]
Length = 526
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 278/480 (57%), Gaps = 47/480 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R LA PD+V++TP + L + L ++L LV+DEAD
Sbjct: 53 VRSVNLTQKVSDAVQRTMLADYPDLVVSTPARVVTNLGSSALSL----ENLTHLVIDEAD 108
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE+D+ AL+ IPRG Q LMSAT + +VD LK L +P L L + D
Sbjct: 109 LVLSYGYEEDINALAKAIPRGVQTFLMSATLTDEVDTLKGLFCRSPVTLKLEDKDDQ--- 165
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF + +D +R+KLFLE+FGIKS
Sbjct: 166 --GAGVSQFVVRCAEDEKFLLTYVIFKLQLIKGKVIIFVDDVDRCYRVKLFLEQFGIKSC 223
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------TKEKDQSDEGGHVDSR----- 241
+LN+ELP NSR+H+++EFN G++D LIA D+ + +K+ +++E G D
Sbjct: 224 VLNSELPINSRIHVVQEFNKGVYDILIAADEQEVIGARKSKKSKETEEAGSSDEDEGEPE 283
Query: 242 -KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
KSK+ + + ++G+ RGIDF+NV V+NF++P + Y HRIGRTGRA TG ++S
Sbjct: 284 DKSKRRKVSGKEKDYGISRGIDFQNVACVLNFDLPSTSKSYTHRIGRTGRAGKTGMALSF 343
Query: 301 VSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
V P + K E + + + + + + + P+ VE+ RYR D
Sbjct: 344 VIPKDQHGKHRPTSTATSKHDESVLAKIVKRQGKLGHEVKPYHF-EMKQVEAFRYRMTDA 402
Query: 349 AKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVP 408
++VT++AV+E+RA+++R E++ SEKLK HFE NP++L L+HD +L HL+ +P
Sbjct: 403 LRAVTRLAVQEARAREIRQELIKSEKLKRHFEENPEELRQLRHDDELRSARVQPHLKHIP 462
Query: 409 DYLLDAKTQEACKMVKLARAAMGNKNS---------SRRQGPRRKF----RKSDPLKSFS 455
+YL+ AK ++ + + +N +R +G RKF +K DPLK+F+
Sbjct: 463 EYLMPAKGKKGLSSGDVGFVSFRKQNENRIRKAREKNRGKGNGRKFAGVKKKVDPLKTFN 522
>gi|156052519|ref|XP_001592186.1| hypothetical protein SS1G_06425 [Sclerotinia sclerotiorum 1980]
gi|160380645|sp|A7EM78.1|DBP9_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp9
gi|154704205|gb|EDO03944.1| hypothetical protein SS1G_06425 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 607
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 190/490 (38%), Positives = 277/490 (56%), Gaps = 52/490 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R+ LA PDIVIATP +T L +L +V+DEAD
Sbjct: 128 VRAVNLTQRVSDAVQRSLLADSPDIVIATPARASLNANTSAL----LLTNLTHMVIDEAD 183
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++DL+ ++ ++P+G Q +LMSAT +S+V+ LK L NP +L L E D
Sbjct: 184 LVLSYGYDEDLQNVAKIMPKGVQTVLMSATLTSEVETLKGLFCRNPEVLKLEEAEDEG-- 241
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
K V QF + C+E +K L + + KL+L++ K +IF ID +RLKLFLE+FG +S
Sbjct: 242 ---KGVSQFVVKCAEDEKFLLVYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRSC 298
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDD------------TQTKEKDQSDEGGH--- 237
ILN++LP NSR+H++EEFN ++D +IA+D+ +T+E + D G
Sbjct: 299 ILNSQLPVNSRIHVVEEFNKNVYDIIIASDEHEVLGDEDEPKPEETEEVEADDASGEKED 358
Query: 238 -VDSRKSKKHPK------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
D++K K P K D E+GV RGIDFKNV V+NF++P ++ Y HRIGRT R
Sbjct: 359 AKDAKKETKQPSKKKQKTGKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRTAR 418
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNII----------APFPLLAQNAV 338
A TG ++S V P + + S DDE + II P+ + V
Sbjct: 419 AGQTGMALSFVIPSALYRKHKPTSIESAKDDEKVLAKIIKHQAKKGKEVKPYNFDMKQ-V 477
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 398
++ RYR D ++VT IAV+E++A+++R E++ SEKLK HFE NP DL L+HD +L
Sbjct: 478 DAFRYRMGDALRAVTSIAVQEAKAREIRQELMKSEKLKRHFEENPSDLYHLRHDGELRPA 537
Query: 399 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR--------RQGPRRKFRKSDP 450
+HL+ VPDYLL + ++ + M +R + R K RKSDP
Sbjct: 538 RVQAHLKHVPDYLLPKEGKKGITGGDIGFVGMHKTTENRIRKARAANKAKGRGKGRKSDP 597
Query: 451 LKSFSAEPTK 460
LK+F A+ K
Sbjct: 598 LKTFKAKSRK 607
>gi|400599562|gb|EJP67259.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 604
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 192/481 (39%), Positives = 285/481 (59%), Gaps = 47/481 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V+LT + + R+ LA PDIVI+TP ++ G + S + L LVLDEAD
Sbjct: 130 VRAVKLTDKLSDAVQRSLLATLPDIVISTPARAWHNVN-GNSSALSLA-KLSHLVLDEAD 187
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LLLSYGY+ DL+ LS IP+G Q ++MSAT +S+V+ LKK+ + +PE+ D+++
Sbjct: 188 LLLSYGYDGDLENLSWSIPKGIQTIMMSATLTSEVNSLKKIFYRD----NVPELLDLEE- 242
Query: 133 VIPKN----VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
P+N + Q C+E +K L + KL+LV+ K +IF ID +RLKLF E+FG
Sbjct: 243 --PENEGEGITQLVTKCAEDEKFLLAYVIFKLKLVKGKCIIFVADIDRCYRLKLFFEQFG 300
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ----------TKEKDQSDEGGHV 238
I+S ILNAELP NSR+H++EEFN ++D +IA+D+ + + ++ ++ G
Sbjct: 301 IRSCILNAELPVNSRIHVVEEFNKNVYDIIIASDENEILGNEDKAGEEEAEEAEEQEGEE 360
Query: 239 DSRKSKKHPKAK-----LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 293
+++KS+K PK K D E+GV RGIDFKNV VINF++P A+ Y HRIGRT RA
Sbjct: 361 ETQKSEKRPKKKRKATEQDLEYGVSRGIDFKNVAAVINFDLPTTASSYTHRIGRTARAGK 420
Query: 294 TGASVSLVSP-DEMKIF-----------EEIKSFVGDDENEDSNIIAPFPLLAQNAVESL 341
G ++S V P D+ + E+I + + + + I P+ + VE+
Sbjct: 421 AGMALSFVVPKDQYRKHMPTTIASTEKDEKIMARITKQQAKKGKEIKPYNFNPEQ-VEAF 479
Query: 342 RYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA 401
RYR D ++VTK+AVRE+R ++LR E+L SEKLK +FE NP ++ L+HD +L
Sbjct: 480 RYRMNDALRAVTKVAVREARTRELRQELLKSEKLKRYFEENPTEMAHLRHDGELRTARQQ 539
Query: 402 SHLRDVPDYLLDAKTQEACKMVKLA----RAAMGNKNSSRR--QGPRRKFRKSDPLKSFS 455
+HL+ +P+YLL + +EA K+ R G S+R G R RK DPLK+F+
Sbjct: 540 AHLKHIPEYLLPKEGKEALTAAKIGFVPLRKFGGKDRKSKRGKSGKRIGSRKGDPLKTFT 599
Query: 456 A 456
A
Sbjct: 600 A 600
>gi|156840672|ref|XP_001643715.1| hypothetical protein Kpol_1009p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114338|gb|EDO15857.1| hypothetical protein Kpol_1009p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 479
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 197/495 (39%), Positives = 284/495 (57%), Gaps = 60/495 (12%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
+I C + + + ++S MP+S L + L P+I+IATPG + L T V +S S +
Sbjct: 1 MILYCSNDI--RSLNISSDMPSSVLTSLLLEKPEIIIATPGKLMTLLDTNV-ESVSLEE- 56
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYI 120
LK LV+DE DL+L++GY++DL ++ +P + Q LMSAT + D+ +LKK P I
Sbjct: 57 LKFLVIDEVDLVLTFGYKEDLSKIAEYLPLKKNLQTFLMSATLNDDIQELKKEFCRAPAI 116
Query: 121 LTL--PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
L E+ K+++I Q+++ SE DK L + KL L++ K LIF N ID +
Sbjct: 117 LKFNDDEISKDKNKLI-----QYYVKTSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGY 171
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------------- 225
RLKL LE+FGIKS ILN+ELP NSR HI+++FN ++ LIATDDT+
Sbjct: 172 RLKLVLEQFGIKSCILNSELPANSRQHIVDQFNKNVYHLLIATDDTEYIKEEDEENDDEI 231
Query: 226 ---TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 282
++E+D+ ++ +K KK K K D EFGV RG+DF+NV V+NF++P A YV
Sbjct: 232 ETNSEEQDKVEDSNDTKDKKGKKASKIKKDKEFGVSRGVDFQNVACVLNFDLPTTAKSYV 291
Query: 283 HRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA-------------- 328
HRIGRT RA TG ++S V P +K F + K + D I++
Sbjct: 292 HRIGRTARAGKTGTAISFVVP--LKEFGKHKPSMYQSTKRDEKILSRIIKQQSKLGLELQ 349
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
P+ + +E RYR ED ++VT++A+RE+R ++L++E+L SEKLK HFE NP++L
Sbjct: 350 PYSFDTKQ-IEGFRYRMEDGFRAVTQVAIREARVKELKDELLASEKLKRHFEENPQELQS 408
Query: 389 LKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV---------KLARAAMGNKNSSRRQ 439
L+HDK+L HL+ VPDYLL A+ +E K V K R NK +R
Sbjct: 409 LRHDKELHPSRVQQHLKRVPDYLLPAEAREGKKKVGFVPFHSVKKSNRHKKNNKVFKKRS 468
Query: 440 GPRRKFRKSDPLKSF 454
G KSDPLK+F
Sbjct: 469 GS-----KSDPLKNF 478
>gi|358382914|gb|EHK20584.1| hypothetical protein TRIVIDRAFT_90268 [Trichoderma virens Gv29-8]
Length = 616
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 193/479 (40%), Positives = 284/479 (59%), Gaps = 47/479 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
++ V+LT + + R+ L+ PDIVI+TP + S + S D L LVLDEA
Sbjct: 145 VRAVKLTDKLTDAVQRSLLSTCPDIVISTPA---RAWHNVNGNSSALSLDKLSYLVLDEA 201
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN--PYILTLPEVGDV 129
DLLLSYGY +DL++LS IP+G Q ++MSAT +++VD LKK+ + P +L L E D
Sbjct: 202 DLLLSYGYSEDLESLSWSIPKGIQTIMMSATLTTEVDSLKKIFYRDQQPTLLDLEE-PDA 260
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+ E V Q C E +K L I + KL+LV+ K +IF ID +RLKL+ E+FGI
Sbjct: 261 EGE----GVTQLVTKCGEDEKFLLIYVIFKLQLVKGKCIIFVADIDRCYRLKLYFEQFGI 316
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT----------KEKDQSDEGGHVD 239
+S ILN+ELP NSR+H++EEFN ++D +IA+D+ + +E++++D +
Sbjct: 317 RSCILNSELPVNSRIHVVEEFNRNVYDIIIASDEKEVLGNEEKAEEEQEEEENDGESKQE 376
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
SR KK AK D E+GV RGIDFKNV VINF++P +A+ Y HRIGRT RA TG ++S
Sbjct: 377 SRPKKKRKAAKGDVEYGVSRGIDFKNVAAVINFDLPTSASSYTHRIGRTARAGRTGMALS 436
Query: 300 LVSPDEMKIFEEIKSFVGDDENEDSNI-------------IAPFPLLAQNAVESLRYRAE 346
V P ++ + I + + EN++ + I P+ ++ V++ RYR
Sbjct: 437 FVVPKDL-YRKHIHTSIASSENDEKILARITKQQAKKGKEIKPYN-FNKDQVDAFRYRMN 494
Query: 347 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 406
D ++VTK+A+RE+R ++LR E+L SEKLK +FE NP +++ L+HD +L +HL+
Sbjct: 495 DALRAVTKVAIREARTRELRQELLKSEKLKRYFEENPSEMNHLRHDGELRTARQQAHLKH 554
Query: 407 VPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK---------FRKSDPLKSFSA 456
VPDYLL + ++A + + K RR G +RK RK DPLK+F A
Sbjct: 555 VPDYLLPKEGRQALTAGDIGFVPL--KKFDRRAGTKRKGGKRSAKGGVRKGDPLKTFKA 611
>gi|160380693|sp|A7TPC9.2|DBP9_VANPO RecName: Full=ATP-dependent RNA helicase DBP9
Length = 597
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 195/485 (40%), Positives = 281/485 (57%), Gaps = 58/485 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ + ++S MP+S L + L P+I+IATPG + L T V +S S + LK LV+DE D
Sbjct: 127 IRSLNISSDMPSSVLTSLLLEKPEIIIATPGKLMTLLDTNV-ESVSLEE-LKFLVIDEVD 184
Query: 73 LLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTL--PEVGD 128
L+L++GY++DL ++ +P + Q LMSAT + D+ +LKK P IL E+
Sbjct: 185 LVLTFGYKEDLSKIAEYLPLKKNLQTFLMSATLNDDIQELKKEFCRAPAILKFNDDEISK 244
Query: 129 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
K+++I Q+++ SE DK L + KL L++ K LIF N ID +RLKL LE+FG
Sbjct: 245 DKNKLI-----QYYVKTSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFG 299
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ----------------TKEKDQS 232
IKS ILN+ELP NSR HI+++FN ++ LIATDDT+ ++E+D+
Sbjct: 300 IKSCILNSELPANSRQHIVDQFNKNVYHLLIATDDTEYIKEEDEENDDEIETNSEEQDKV 359
Query: 233 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 292
++ +K KK K K D EFGV RG+DF+NV V+NF++P A YVHRIGRT RA
Sbjct: 360 EDSNDTKDKKGKKASKIKKDKEFGVSRGVDFQNVACVLNFDLPTTAKSYVHRIGRTARAG 419
Query: 293 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAV 338
TG ++S V P +K F + K + D I++ P+ + +
Sbjct: 420 KTGTAISFVVP--LKEFGKHKPSMYQSTKRDEKILSRIIKQQSKLGLELQPYSFDTKQ-I 476
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 398
E RYR ED ++VT++A+RE+R ++L++E+L SEKLK HFE NP++L L+HDK+L
Sbjct: 477 EGFRYRMEDGFRAVTQVAIREARVKELKDELLASEKLKRHFEENPQELQSLRHDKELHPS 536
Query: 399 PPASHLRDVPDYLLDAKTQEACKMV---------KLARAAMGNKNSSRRQGPRRKFRKSD 449
HL+ VPDYLL A+ +E K V K R NK +R G KSD
Sbjct: 537 RVQQHLKRVPDYLLPAEAREGKKKVGFVPFHSVKKSNRHKKNNKVFKKRSGS-----KSD 591
Query: 450 PLKSF 454
PLK+F
Sbjct: 592 PLKNF 596
>gi|346971615|gb|EGY15067.1| ATP-dependent RNA helicase dbp9 [Verticillium dahliae VdLs.17]
Length = 609
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 193/496 (38%), Positives = 288/496 (58%), Gaps = 60/496 (12%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L C +Q V+LT + + RA L+ PDIVI+TP +S+ L + +
Sbjct: 124 SLAAFCAKDIQ--AVKLTDKVSTTVQRALLSANPDIVISTPARAWDNVSSSALSLANLTH 181
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
LVLDEADL+LSYGY++DL+ ++ +P+G Q +LMSAT + +VD +K L NP +L
Sbjct: 182 ----LVLDEADLVLSYGYKEDLQNVARSLPKGVQTILMSATLTPEVDTVKGLFCRNPALL 237
Query: 122 TL--PEV-GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
L PE GD + QF + C+E +K L I + KL+L+Q KAL+F + +D ++
Sbjct: 238 DLEQPEAEGD--------GITQFVVKCAEDEKFLLIYVIFKLKLIQGKALVFCHDVDRSY 289
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT------------ 226
+LKL+ E+FGI+S ILNAELP NSRLH+++EFN G++D LIA+DD +
Sbjct: 290 KLKLYFEQFGIRSCILNAELPVNSRLHVVDEFNKGVYDILIASDDNEVVGDEGQEDEGEE 349
Query: 227 --KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHR 284
E+ + + +++ ++ ++ D E+GV RGIDFKNV VINF++P +A Y HR
Sbjct: 350 ETTEEPKKEAKKSKKTQQQQQQRASRKDKEYGVSRGIDFKNVAAVINFDLPTSAKSYTHR 409
Query: 285 IGRTGRAYNTGASVSLVSP------------DEMKIFEEIKSFVGDDENEDSNIIAPFPL 332
IGRT RA G ++S V P + + E+I + + + + + P+
Sbjct: 410 IGRTARAGQRGMALSFVIPAQHYRGHPPSSVESAEHDEKILARIEKQQAKKGKEVKPYHF 469
Query: 333 -LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
+AQ V + +YR +D ++VT++AVRE+R ++LR E++ S+KL+ HFE NP++L L+H
Sbjct: 470 DMAQ--VSAFKYRMDDALRAVTRVAVREARTRELRQELIKSDKLRRHFEENPQELAHLRH 527
Query: 392 DKDLSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGNKNSSRRQGPR---- 442
D +L HLR VPDYLL A T + V L R +NSSRR G +
Sbjct: 528 DGELRAARMQPHLRHVPDYLLPADGKKGLTADEVGFVPL-RKKNDRRNSSRRAGGKKNSN 586
Query: 443 RKF----RKSDPLKSF 454
R F +KSDPLKSF
Sbjct: 587 RVFKVGRKKSDPLKSF 602
>gi|320167827|gb|EFW44726.1| ATP-dependent RNA helicase dbp9 [Capsaspora owczarzaki ATCC 30864]
Length = 631
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 195/541 (36%), Positives = 289/541 (53%), Gaps = 88/541 (16%)
Query: 3 LIELCKGQVQ-LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
L + C +V +++ TS+ R L PDIVI TP + + G L ++
Sbjct: 101 LTQYCSREVTAVELAGDTSATAIEAQRHELLANPDIVIGTPSRIVAHIEAGHLDVRT--- 157
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL+++V+DEADL+ +GYE+D+K L +PR Q LMSAT S DVD LK+L+LH+P IL
Sbjct: 158 SLQMIVVDEADLVFGFGYENDIKTLLRHLPRIVQAFLMSATLSPDVDSLKRLMLHSPVIL 217
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E + D + Q+ I C DK L + T LKL L++ K +IF N +D +R+K
Sbjct: 218 KLQE-SQLPDA---DRLMQYVIKCDMNDKFLLVFTFLKLRLLRGKTIIFVNDVDRCYRVK 273
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD------------------ 223
LFLE+FGI++ +LN+ELPQNSR HI++EFN G++DY+IATD+
Sbjct: 274 LFLEQFGIRACVLNSELPQNSRYHIVQEFNRGVYDYIIATDEHDSNSQVDDSDSDSDNDE 333
Query: 224 ---TQTKEKDQ-----------------------------SDEGGHVDSRKSKKHPKAKL 251
+T E D + +G K K KA
Sbjct: 334 EESNETAETDTVEAVFENDDDAEQATTTATASAEPVATAAASKGKAQQRPKRKAGRKAGA 393
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
DSE+GV RGIDF+NV VINF+ P+ A YVHR+GRT R +G S+SL++P++
Sbjct: 394 DSEYGVARGIDFQNVSNVINFDFPETARSYVHRVGRTARGDKSGQSLSLIAPEDEGRLAI 453
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
++ + ++ + F A + + + RYRA D ++VT +V+E+R ++++NEI N
Sbjct: 454 VQRKLS--KHNSGHKFQQFQ-FAMHEIAAFRYRAADALRAVTAASVKEARLKEIKNEIFN 510
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL------------------- 412
S+KLKA+FE NPKDL+ L+HDK +HL+ +P YL+
Sbjct: 511 SQKLKAYFEDNPKDLEALRHDKPSHPARIQAHLKHIPSYLMPESLMKKKLAPAATSEAAA 570
Query: 413 ---DAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFR---KSDPLKSFSAEPTKRAGK 464
D + E + AA K +++ +G P R + K+DPLKSF+A P+KR +
Sbjct: 571 MAVDGEAAEEAPEAEEDLAASEPKPNTKHRGKQPHRGMKRPAKADPLKSFAANPSKRFAQ 630
Query: 465 G 465
G
Sbjct: 631 G 631
>gi|321462909|gb|EFX73929.1| hypothetical protein DAPPUDRAFT_109408 [Daphnia pulex]
Length = 541
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 178/463 (38%), Positives = 269/463 (58%), Gaps = 33/463 (7%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ +V + S S + LA PDI+IATP + L + L K DSL+ V+DEAD
Sbjct: 100 VSIVNVGSQTAISGQKTLLAAHPDIIIATPSTILVHLVSKKLVLK---DSLQFFVIDEAD 156
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+ S+G+E+DLK++ +P QC+L SAT D+ LK+L+LH P L L E E
Sbjct: 157 LVFSFGFEEDLKSVLGYLPTDYQCVLTSATLGDDIQSLKQLVLHQPVTLKLEE-----PE 211
Query: 133 VIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ P + + Q+ I E DK + I L KL LV+ K +IF +D ++LKL+L++FGI S
Sbjct: 212 LPPASQLTQYQIYAEESDKAVLIYALFKLGLVRGKTIIFVRNVDRCYKLKLYLQQFGIPS 271
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE-----KDQSDEGGHVDSRKSKKH 246
LN ELP NSR HI+++FNAG++D +IA+D++ ++ DQS++G
Sbjct: 272 CALNGELPVNSRCHIVQQFNAGIYDIIIASDESTLEDPNYASADQSNKG----------- 320
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
K K D E GVVRGIDF+ V VINF+ P + Y+HR+GRT R N G ++S VS E
Sbjct: 321 -KRKNDKESGVVRGIDFQFVSNVINFDFPSDVDSYIHRVGRTARGNNKGTALSFVSVREK 379
Query: 307 KIFEEIKSFVGD--DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQD 364
+ E ++ + D +DS + P+ + +E+ RYR++D K+VT+IAVRE+R +
Sbjct: 380 YLMERVEEHLQDWVPPGQDS-VFKPYQFRMEE-IEAFRYRSQDAWKTVTRIAVREARLAE 437
Query: 365 LRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV- 423
+++E++ S+KL++HFE NP D+ +L+HDK L SHL+DVPDY++ + K
Sbjct: 438 IKSEMMQSKKLRSHFENNPNDMGILRHDKALHTVRIQSHLKDVPDYIIPPTLRRLAKASG 497
Query: 424 KLARAAMGNKNSSRRQGPRRKF--RKSDPLKSFSAEPTKRAGK 464
AR + R + F RK +PL +F + K+ +
Sbjct: 498 HKARGGQSSHGEGRTGKNEKSFLKRKDNPLLTFEFDGFKKKAR 540
>gi|322711278|gb|EFZ02852.1| ATP-dependent RNA helicase dbp9 [Metarhizium anisopliae ARSEF 23]
Length = 612
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 188/482 (39%), Positives = 284/482 (58%), Gaps = 47/482 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V+LT + + R+ L+ PDIVI+TP + + QS D L LVLDEAD
Sbjct: 135 VRAVKLTDKLSDAVQRSLLSTNPDIVISTPARAWYNVKSN--QSSLSLDKLTHLVLDEAD 192
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN--PYILTLPEVGDVK 130
LLLSYGY++DL+ LS IP+G Q ++MSAT +++++ LKK+ + P +L L E D +
Sbjct: 193 LLLSYGYDEDLENLSWSIPKGIQTIMMSATLTAEIESLKKIFYRDNAPTLLDLEE-PDAE 251
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
E + Q C+E +K L + KL+LV+ K +IF ID +RLKLF E+FGI+
Sbjct: 252 GE----GITQLVTKCAEDEKFLLAYIIFKLQLVKGKCIIFVGDIDRCYRLKLFFEQFGIR 307
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ---------SDEGGHVDSR 241
S ILN+ELP NSR+H++EEFN ++D +IA+D+ + ++ ++ D+
Sbjct: 308 SCILNSELPVNSRIHVVEEFNRNVYDIIIASDEKEVLGNEEKADEEENNEDEQEEDSDAE 367
Query: 242 KSKKHPK-----AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 296
K ++ PK +K D E+GV RGIDFKNV VINF++P +A+ Y HRIGRT RA G
Sbjct: 368 KEERRPKKKRKASKRDKEYGVSRGIDFKNVAAVINFDLPTSASSYTHRIGRTARAGKAGM 427
Query: 297 SVSLVSPDEMKIFEEIKSFVGDDENEDSNI-------------IAPFPLLAQNAVESLRY 343
++S V P E + + + + + EN++ + I P+ + VE+ RY
Sbjct: 428 ALSFVIPKE-QFRKHMPTSIQSAENDEKVLARITRQQAKKGKEIKPYNFNTKQ-VEAFRY 485
Query: 344 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASH 403
R D ++VTK+AVRE+R ++LR E++ SEKLK +FE NP +++ L+HD +L +H
Sbjct: 486 RMNDALRAVTKVAVREARTRELRQELMKSEKLKRYFEENPSEINHLRHDGELRTARQQAH 545
Query: 404 LRDVPDYLL--DAK---TQEACKMVKLAR--AAMGNK--NSSRRQGPRRKFRKSDPLKSF 454
L+ +PDYLL D K T+ V L + + G++ ++R G R RK DPLK+F
Sbjct: 546 LKHIPDYLLPKDGKKDLTENDIGFVPLRKPGSLRGHRKGKGTKRGGFRVGARKGDPLKTF 605
Query: 455 SA 456
A
Sbjct: 606 KA 607
>gi|301122249|ref|XP_002908851.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262099613|gb|EEY57665.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 609
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 181/461 (39%), Positives = 271/461 (58%), Gaps = 27/461 (5%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
M L+ C+ V L + SM A +A L PD+++ATPG + L G L +
Sbjct: 113 MDLMYYCQDTVSLLALG-GQSMNAQ--QALLRDAPDVLVATPGRLVAHLEAGNL---TLK 166
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
DS++ +V+DEADL+LS+GY +D++ + +P+ CQ MSAT S +++KLK+ +LHNP +
Sbjct: 167 DSVQTVVIDEADLVLSFGYGEDIRTIFNALPKACQTFCMSATLSPELEKLKRSVLHNPAV 226
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
+ L E +QQF++ DK L + LL+L +V K + F N+ D A+RL
Sbjct: 227 VKLEE------GATDGKLQQFYLPVKASDKDLLLYALLRLGVVSGKVIFFVNSTDAAYRL 280
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
KLF E+F IKSA+LNA+LP NSR HI+EEFN GLFDYLIATDD+ +++ ++ G
Sbjct: 281 KLFFEQFVIKSAVLNAKLPHNSRQHIIEEFNRGLFDYLIATDDSVDRDEQETKAVGSKRG 340
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
R D +GV RG+DF+ V VIN + P++ Y HRIGRT R +G ++SL
Sbjct: 341 RAD--------DESYGVSRGVDFRGVQFVINVDFPKSVRAYTHRIGRTARGGASGTALSL 392
Query: 301 VSPDEMKIFEEIKSFVGDDE---NEDSNIIAPFPLLAQN--AVESLRYRAEDVAKSVTKI 355
VS ++ K +K + +E +++IA LA + ++ RYR EDV ++VT++
Sbjct: 393 VSKEDAKEERALKRVQAKQQAVLSETNDVIAQPAELAFDLKEIDCFRYRVEDVRRAVTRV 452
Query: 356 AVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 415
AVRE++ D++ E+LNS++L AHF+ NP+DL++L+HDK + P HL +PDYL+ +
Sbjct: 453 AVREAQLADVKKEMLNSDRLAAHFQANPRDLNMLEHDKVVGSAPVQPHLATIPDYLVPTE 512
Query: 416 TQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 456
Q + NK G RR +DPL +F A
Sbjct: 513 LQPPAPGRTKKKLNKHNKRQRLADGKRRT--DNDPLHTFVA 551
>gi|442570098|sp|Q1DWF4.2|DBP9_COCIM RecName: Full=ATP-dependent RNA helicase DBP9
gi|392868756|gb|EAS34544.2| ATP-dependent RNA helicase DBP9 [Coccidioides immitis RS]
Length = 612
Score = 310 bits (795), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 187/494 (37%), Positives = 280/494 (56%), Gaps = 58/494 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ LT + + RA LA PDI+I+TP + + S S +D L LV+DEAD
Sbjct: 128 IRSANLTQKVSDAVQRAILADLPDIIISTPA---RAIINTNSSSLSLND-LTHLVIDEAD 183
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE D++ L+ IPRG Q LLMSAT +S+VD LK L +P IL L E D
Sbjct: 184 LVLSYGYEQDMQNLAKAIPRGVQTLLMSATLTSEVDALKGLFCRSPVILKLEEAEDEG-- 241
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF ID ++RLKLFLE+FGIKS
Sbjct: 242 ---AGIAQFAVKCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRSYRLKLFLEQFGIKSC 298
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---------TKEKDQS---------DE 234
+LN+ELP NSR+H+++EFN G++D +IA DD + +K +QS +E
Sbjct: 299 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVIGEIPKKGSKTPEQSNGENGDEPEEE 358
Query: 235 GGHVDSRKSKKHPK-----AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
G D + + P + + ++G+ RGIDF++V V+NF++P A Y HRIGRTG
Sbjct: 359 KGFSDEDEVEPPPSKKRKKSTKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTG 418
Query: 290 RAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNA---------V 338
RA TG ++SL+ P E+ + SF +DE + II L + +
Sbjct: 419 RAGKTGMALSLIVPSELYGRHKPTSFPTAKNDEAVLAKIIKRQAKLGREVKPYNFDTKQI 478
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 398
++ RYR D ++VT++AV+E+R ++++ E+LNSEKLK HFE NP++L L+HD +L
Sbjct: 479 DAFRYRMTDALRAVTRVAVQEARTKEIKQELLNSEKLKRHFEENPEELRQLRHDGELRPT 538
Query: 399 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR------------ 446
+HL+ VP+YL+ AK + + + N +R + R + R
Sbjct: 539 RVQAHLKHVPEYLMPAKGKAGLTSGDIGFVGLRKTNENRIRKARDRNRMRGKGGRKGGRG 598
Query: 447 ---KSDPLKSFSAE 457
K+DPLK+F ++
Sbjct: 599 GGRKADPLKTFKSK 612
>gi|303315147|ref|XP_003067581.1| ATP-dependent RNA helicase DBP9, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240107251|gb|EER25436.1| ATP-dependent RNA helicase DBP9, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 612
Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 187/494 (37%), Positives = 280/494 (56%), Gaps = 58/494 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ LT + + RA LA PDI+I+TP + + S S +D L LV+DEAD
Sbjct: 128 IRSANLTQKVSDAVQRAILADLPDIIISTPA---RAIINTNSSSLSLND-LTHLVIDEAD 183
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE D++ L+ IPRG Q LLMSAT +S+VD LK L +P IL L E D
Sbjct: 184 LVLSYGYEQDMQNLAKAIPRGVQTLLMSATLTSEVDALKGLFCRSPVILKLEEAEDEG-- 241
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF ID ++RLKLFLE+FGIKS
Sbjct: 242 ---AGIAQFAVKCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRSYRLKLFLEQFGIKSC 298
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---------TKEKDQS---------DE 234
+LN+ELP NSR+H+++EFN G++D +IA DD + +K +QS +E
Sbjct: 299 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVIGEIPKKGSKTPEQSNGENGDEPEEE 358
Query: 235 GGHVDSRKSKKHPK-----AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
G D + + P + + ++G+ RGIDF++V V+NF++P A Y HRIGRTG
Sbjct: 359 KGFSDEDEVEPPPSKKRKKSTKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTG 418
Query: 290 RAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNA---------V 338
RA TG ++SL+ P E+ + SF +DE + II L + +
Sbjct: 419 RAGKTGMALSLIVPSELYGRHKPTSFPTTKNDEAVLAKIIKRQAKLGREVKPYNFDTKQI 478
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 398
++ RYR D ++VT++AV+E+R ++++ E+LNSEKLK HFE NP++L L+HD +L
Sbjct: 479 DAFRYRMTDALRAVTRVAVQEARTKEIKQELLNSEKLKRHFEENPEELRQLRHDGELRPT 538
Query: 399 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR------------ 446
+HL+ VP+YL+ AK + + + N +R + R + R
Sbjct: 539 RVQAHLKHVPEYLMPAKGKAGLTSGDIGFVGLRKTNENRIRKARDRNRMRGKGGRKGGRG 598
Query: 447 ---KSDPLKSFSAE 457
K+DPLK+F ++
Sbjct: 599 GGRKADPLKTFKSK 612
>gi|119190623|ref|XP_001245918.1| hypothetical protein CIMG_05359 [Coccidioides immitis RS]
Length = 607
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 187/494 (37%), Positives = 280/494 (56%), Gaps = 58/494 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ LT + + RA LA PDI+I+TP + + S S +D L LV+DEAD
Sbjct: 123 IRSANLTQKVSDAVQRAILADLPDIIISTPA---RAIINTNSSSLSLND-LTHLVIDEAD 178
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE D++ L+ IPRG Q LLMSAT +S+VD LK L +P IL L E D
Sbjct: 179 LVLSYGYEQDMQNLAKAIPRGVQTLLMSATLTSEVDALKGLFCRSPVILKLEEAEDEG-- 236
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF ID ++RLKLFLE+FGIKS
Sbjct: 237 ---AGIAQFAVKCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRSYRLKLFLEQFGIKSC 293
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---------TKEKDQS---------DE 234
+LN+ELP NSR+H+++EFN G++D +IA DD + +K +QS +E
Sbjct: 294 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVIGEIPKKGSKTPEQSNGENGDEPEEE 353
Query: 235 GGHVDSRKSKKHPK-----AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
G D + + P + + ++G+ RGIDF++V V+NF++P A Y HRIGRTG
Sbjct: 354 KGFSDEDEVEPPPSKKRKKSTKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTG 413
Query: 290 RAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNA---------V 338
RA TG ++SL+ P E+ + SF +DE + II L + +
Sbjct: 414 RAGKTGMALSLIVPSELYGRHKPTSFPTAKNDEAVLAKIIKRQAKLGREVKPYNFDTKQI 473
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 398
++ RYR D ++VT++AV+E+R ++++ E+LNSEKLK HFE NP++L L+HD +L
Sbjct: 474 DAFRYRMTDALRAVTRVAVQEARTKEIKQELLNSEKLKRHFEENPEELRQLRHDGELRPT 533
Query: 399 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR------------ 446
+HL+ VP+YL+ AK + + + N +R + R + R
Sbjct: 534 RVQAHLKHVPEYLMPAKGKAGLTSGDIGFVGLRKTNENRIRKARDRNRMRGKGGRKGGRG 593
Query: 447 ---KSDPLKSFSAE 457
K+DPLK+F ++
Sbjct: 594 GGRKADPLKTFKSK 607
>gi|239610502|gb|EEQ87489.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis ER-3]
Length = 628
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 181/507 (35%), Positives = 278/507 (54%), Gaps = 73/507 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ LT + + R+ LA PDIVI+TP +++ L + + LV+DEAD
Sbjct: 129 IRSTNLTQKVSDAVQRSILADLPDIVISTPARAVVNINSSALTLQHLTH----LVIDEAD 184
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L E D
Sbjct: 185 LVLSYGYEEDMQSLAKAVPRGVQAFLMSATFTSEVDALKGLFCRNPVVLKLEEKEDEG-- 242
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S
Sbjct: 243 ---AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSC 299
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------------TKEKDQS-------- 232
+LN+ELP NSR+H+++EFN G++D +IA DD + +++ DQS
Sbjct: 300 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELPKKPRKPSRKSDQSSKDPEQEN 359
Query: 233 DEGGHVDS---------------RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQN 277
D+G V + R SK+ K+ + ++G+ RGIDF++V V+NF++P N
Sbjct: 360 DDGSGVKTTNNYLQDSSEDETKARPSKRPKKSAKEKDYGISRGIDFQDVACVLNFDLPTN 419
Query: 278 AAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED------------SN 325
+ Y HRIGRTGRA TG ++S V P + + SF +E
Sbjct: 420 SKSYTHRIGRTGRAGKTGMALSFVVPSDQFGKHKPTSFSSAKHDEAVLGKIIKRQGKLGR 479
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
+ P+ + V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++
Sbjct: 480 EVKPYHFEMKQ-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEE 538
Query: 386 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV----------------KLARAA 429
L L+HD +L +HL+ VPDYL+ K + ++ +A
Sbjct: 539 LRQLRHDGELRAARVQAHLKHVPDYLMPTKGKGGLSSGPAGDVGFVGFRKTHENRIRKAR 598
Query: 430 MGNKNSSRRQGPRRKFRKSDPLKSFSA 456
N+ R R +K DPLKSF++
Sbjct: 599 ERNRGRGRPAKAGRGGKKVDPLKSFNS 625
>gi|261195464|ref|XP_002624136.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis SLH14081]
gi|239588008|gb|EEQ70651.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis SLH14081]
Length = 628
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 181/507 (35%), Positives = 278/507 (54%), Gaps = 73/507 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ LT + + R+ LA PDIVI+TP +++ L + + LV+DEAD
Sbjct: 129 IRSTNLTQKVSDAVQRSILADLPDIVISTPARAVVNINSSALTLQHLTH----LVIDEAD 184
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L E D
Sbjct: 185 LVLSYGYEEDMQSLANAVPRGVQAFLMSATFTSEVDALKGLFCRNPVVLKLEEKEDEG-- 242
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S
Sbjct: 243 ---AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSC 299
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------------TKEKDQS-------- 232
+LN+ELP NSR+H+++EFN G++D +IA DD + +++ DQS
Sbjct: 300 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELPKKPRKPSRKSDQSSKDPEQEN 359
Query: 233 DEGGHVDS---------------RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQN 277
D+G V + R SK+ K+ + ++G+ RGIDF++V V+NF++P N
Sbjct: 360 DDGSGVKTTNNYLQDSSEDETKARPSKRPKKSAKEKDYGISRGIDFQDVACVLNFDLPTN 419
Query: 278 AAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED------------SN 325
+ Y HRIGRTGRA TG ++S V P + + SF +E
Sbjct: 420 SKSYTHRIGRTGRAGKTGMALSFVVPSDQFGKHKPTSFSSAKHDEAVLGKIIKRQGKLGR 479
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
+ P+ + V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++
Sbjct: 480 EVKPYHFEMKQ-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEE 538
Query: 386 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV----------------KLARAA 429
L L+HD +L +HL+ VPDYL+ K + ++ +A
Sbjct: 539 LRQLRHDGELRAARVQAHLKHVPDYLMPTKGKGGLSSGPAGDVGFVGFRKTHENRIRKAR 598
Query: 430 MGNKNSSRRQGPRRKFRKSDPLKSFSA 456
N+ R R +K DPLKSF++
Sbjct: 599 ERNRGRGRPAKAGRGGKKVDPLKSFNS 625
>gi|409040682|gb|EKM50169.1| hypothetical protein PHACADRAFT_166739 [Phanerochaete carnosa
HHB-10118-sp]
Length = 585
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 179/438 (40%), Positives = 265/438 (60%), Gaps = 44/438 (10%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
L+ C +V + ++S R L+ PDIV+ATP K L+ +LQSK+ +
Sbjct: 110 GLVTYCDKEVT--IANVSSGTTHHLQRTLLSDKPDIVVATPS---KALA--LLQSKANT- 161
Query: 62 SLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY 119
LV+DEADL+LSYG+++D++ + S +P+ Q LMSAT + DV++LK L L +P
Sbjct: 162 ---TLVIDEADLILSYGHDEDVRQIFSSGYLPKVYQSFLMSATMTDDVEQLKGLALRSPV 218
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
IL L E DE N+ Q+ + CSE DK L I +LKL L++ K +IF N +D +R
Sbjct: 219 ILKLEE-----DEDEAANLTQYSVRCSEVDKFLLIYVILKLRLIKGKCIIFVNDVDRCYR 273
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD--------DTQTKEKDQ 231
LKLFLE+F IKS +LN+ELP NSR H+++EFN G+++Y+IA+D D +++E+D
Sbjct: 274 LKLFLEQFSIKSCVLNSELPLNSRYHVVQEFNKGVYEYIIASDESIKKGEQDVESEEEDA 333
Query: 232 S----DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
+ D SRK K K + D E+GV RG+DF +V V+NF++P ++ Y HR+GR
Sbjct: 334 AETKDDNCDQSKSRKRKHRHKGEGDKEYGVTRGVDFVDVSCVVNFDLPPSSRSYTHRVGR 393
Query: 288 TGRAYNTGASVSLVSPDE-------------MKIFEEIKSFVGDDENEDSNIIAPFPLLA 334
T RA +G S+S V P++ K E+I + + ++ + I +
Sbjct: 394 TARAGRSGMSLSFVVPEKEWGKNKVVGCVESTKKDEKISARIEAEQAARGSKIKEYKFDM 453
Query: 335 QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD 394
+ VE+ RYR ED ++VT+ AVRE+R ++L+ EILNS+KLKAHFE NP DL+ L+HDK
Sbjct: 454 KQ-VEAFRYRMEDALRAVTRSAVREARIKELKTEILNSDKLKAHFEDNPLDLEYLRHDKP 512
Query: 395 LSKKPPASHLRDVPDYLL 412
L SH++ VP Y+L
Sbjct: 513 LHPARVQSHMKHVPKYML 530
>gi|148231338|ref|NP_001084622.1| DEAD (Asp-Glu-Ala-Asp) box helicase 56 [Xenopus laevis]
gi|46249840|gb|AAH68749.1| MGC81243 protein [Xenopus laevis]
Length = 552
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 187/452 (41%), Positives = 267/452 (59%), Gaps = 17/452 (3%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+KV ++ S R L PDIV+ TP + L+ Q+ D+L+ LV+DEAD
Sbjct: 108 IKVADISGQADISAQRPILMEKPDIVVGTPS---RVLTHITQQTICVRDTLQALVIDEAD 164
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+ S+G+E+DLK L +P+ Q LMSAT S DV LK+L+LHNP L L E
Sbjct: 165 LIFSFGFEEDLKNLLCQLPKIFQSFLMSATFSEDVQALKELVLHNPVTLKLEE------S 218
Query: 133 VIPKNVQ--QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+P + Q Q+ I C E DK L + TLLKL LV+ K +IF N +D ++RLKLFLE+F I
Sbjct: 219 QLPDSSQLTQYHIQCEEEDKFLLLYTLLKLSLVRGKTIIFVNEVDRSYRLKLFLEQFSIP 278
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ +LN+ELP +SR HI+ +FN G +DY+IATD+ D S +G + +K +
Sbjct: 279 ACVLNSELPIHSRCHIISQFNQGFYDYIIATDEQSL--ADPSVKGRRGEGKKKGGRGQKG 336
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
D E+GV RGIDF+NV TV+NF+ PQ+ Y+HR GRT RA N G +++ V+ E+ +
Sbjct: 337 QDKEYGVSRGIDFQNVSTVLNFDFPQSVDSYIHRAGRTARANNPGVALTFVAHTELPLLA 396
Query: 311 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
++ +G D ++ P+ + VE RYR D +SVTK A++E+R ++++ E+L
Sbjct: 397 GVEEALGGG-VPDEYVLKPYRFCMEE-VEGFRYRCRDAMRSVTKQAIKEARLKEIKEELL 454
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARA-A 429
NSEKLK +FE NP+D LL+HDK L HL++VPDYL+ + + R
Sbjct: 455 NSEKLKTYFEDNPRDFQLLRHDKPLHPAIVKPHLKNVPDYLIPPTLRAVADLHNRKRKRK 514
Query: 430 MGNKNSSRRQGPRRKF-RKSDPLKSFSAEPTK 460
N SS QG R KF R +PL+SF +K
Sbjct: 515 RPNAVSSGFQGTRSKFQRGQNPLRSFKYAKSK 546
>gi|346320186|gb|EGX89787.1| ATP-dependent RNA helicase DBP9 [Cordyceps militaris CM01]
Length = 604
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 191/483 (39%), Positives = 279/483 (57%), Gaps = 51/483 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V+LT + + R+ LA PDIVI+TP ++ G + S S L LVLDEAD
Sbjct: 130 VRAVKLTDKLSDAVQRSLLATLPDIVISTPARAWHNVN-GNSAALSLS-KLSHLVLDEAD 187
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LLLSYGY+ DL+ LS +P+G Q ++MSAT +S++D LKK+ + +PE+ D+++
Sbjct: 188 LLLSYGYDSDLENLSWSLPKGIQTIMMSATLTSEIDSLKKIFYRD----NVPELLDLEE- 242
Query: 133 VIPKN----VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
P N + Q + C E +K L + KL+LV+ K +IF ID +RLKLF E+FG
Sbjct: 243 --PDNEGEGITQLFTKCGEDEKFLLAYIIFKLKLVKGKCIIFVGDIDRCYRLKLFFEQFG 300
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---------------TKEKDQSD 233
I+S ILN+ELP NSR+H++EEFN ++D +IA+D+ + +E++ +
Sbjct: 301 IRSCILNSELPVNSRIHVVEEFNKNVYDIIIASDEKEILGSEDQAAEGEAEEGQEEEAEE 360
Query: 234 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 293
+ R KK K D E+GV RGIDFKNV VINF++P A+ Y HRIGRT RA
Sbjct: 361 ATETSEKRPKKKRKSTKQDLEYGVSRGIDFKNVAAVINFDLPTTASSYTHRIGRTARAGK 420
Query: 294 TGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVE 339
G ++S V P + + + I + + E +D I+A P+ + VE
Sbjct: 421 AGMALSFVVPKD-QYRKHIPTTIASAE-KDEKILARITKQQAKKGKEMKPYNFSTEQ-VE 477
Query: 340 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 399
+ RYR D ++VTK+AVRE+R ++LR E+L SEKLK +FE NP ++ L+HD +L
Sbjct: 478 AFRYRMNDALRAVTKVAVREARTRELRQELLKSEKLKRYFEENPTEMAHLRHDGELRTAR 537
Query: 400 PASHLRDVPDYLLDAKTQEACKMVKLA----RAAMGNKNSSRR--QGPRRKFRKSDPLKS 453
+HL+ +P+YLL + +EA K+ R G S+R G R RK DPLK+
Sbjct: 538 QQAHLKHIPEYLLPKEGKEALTADKIGFVPLRKFGGKDRKSKRGKSGKRIGSRKGDPLKT 597
Query: 454 FSA 456
FSA
Sbjct: 598 FSA 600
>gi|407921724|gb|EKG14864.1| Helicase [Macrophomina phaseolina MS6]
Length = 640
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 202/536 (37%), Positives = 292/536 (54%), Gaps = 89/536 (16%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A C GQ ++V +T + RA LA PDIV+ATPG L+ G L D
Sbjct: 126 AFAAFC-GQ-DVRVANITMREDDAVQRARLADSPDIVVATPGRTCVNLNAGALSL----D 179
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
L LV+DEADL+LSYGY+DDL+++S IP+G Q LMSAT SSDV+ LK L +P +L
Sbjct: 180 RLAHLVIDEADLVLSYGYDDDLQSISKSIPKGTQTFLMSATLSSDVEDLKGLFCRDPVLL 239
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E + K +V Q+ + C+E +K L + + L+LV+ K ++F ID +RLK
Sbjct: 240 ELDEKEEDKGKV-----SQYIVKCAEDEKFLLMYAIFMLKLVKGKVIVFVGDIDRCYRLK 294
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD--------DTQTKEKDQS- 232
LFLE+FGIKS +LN+ELP NSR+H++EEFN ++D +IA+D D + K K +
Sbjct: 295 LFLEQFGIKSCVLNSELPVNSRIHVVEEFNRNVYDIIIASDEHEVLGDEDKKNKRKSKGG 354
Query: 233 ----------------DEGGHVDSRKSKKHPKAKL--DS---------------EFGVVR 259
DEG D+ + K K DS E+G+ R
Sbjct: 355 DEDEEKAEEAEKSNGKDEGADGDAADNDAESKTKTVEDSTEPPRKKRKGRKKDKEYGIAR 414
Query: 260 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP------------DEMK 307
GIDF+NV V+NF++P ++ Y HRIGRT RA G ++S V P + K
Sbjct: 415 GIDFQNVSLVLNFDLPTSSKSYTHRIGRTARAGQNGMAISFVIPKDKFRKHKPTSIESCK 474
Query: 308 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 367
EE+ + + + + N + P+ A+E RYR D ++VT+IAVRE+RA++LR
Sbjct: 475 NDEEVLAKIMKSQEKRGNKVQPYH-FDMKALEGFRYRLADALRAVTRIAVREARARELRQ 533
Query: 368 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK------------ 415
E+L SEKLK HFE NP++L L+HD ++ HL+ VP+YLL A
Sbjct: 534 ELLKSEKLKRHFEENPQELQHLRHDAEVRTARQQPHLKHVPEYLLPAGGKKDVEKEVGFI 593
Query: 416 --TQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKR 469
++ + ++ +A M +N S+ +G K +K+DPLK+F+A KGR K+
Sbjct: 594 GFRKDEGRENRIRKARM--QNRSKGKGRIAKTKKADPLKTFNA-------KGRGKK 640
>gi|403216467|emb|CCK70964.1| hypothetical protein KNAG_0F03020 [Kazachstania naganishii CBS
8797]
Length = 598
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 187/490 (38%), Positives = 275/490 (56%), Gaps = 50/490 (10%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
+I C + K + ++S + AS + A L P+I++ATPG + L T + + D+
Sbjct: 120 MILFCSKDI--KTLNVSSDLSASVMTALLLEKPEIIVATPGKLTNLLDTKI--NYISLDN 175
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYI 120
LK V+DEADL+L++GY+DDL ++ +P + Q LMSAT + D+++LK P I
Sbjct: 176 LKFFVIDEADLVLTFGYQDDLNKIAEYLPLKKNLQTFLMSATLNDDINELKTKFCRAPAI 235
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
L + KD+ + Q+++ +E DK L + KL L++ K LIF N ID +RL
Sbjct: 236 LKFNDDNINKDQT---KLVQYYVKTNEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRL 292
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT---------------- 224
KL +E+FGIKS ILN+ELP NSR HI+++FN L+ LIATDDT
Sbjct: 293 KLVMEQFGIKSCILNSELPSNSRQHIVDQFNKNLYSLLIATDDTDFLKEGDEGEEQESVE 352
Query: 225 -QT--KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 281
QT +E ++E + K + H + K D E+GV RG+DFKNV V+NF++P A Y
Sbjct: 353 EQTDNQETKDTEEPNKEQNTKKRNHTEVKQDKEYGVSRGVDFKNVACVLNFDLPTTAKSY 412
Query: 282 VHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNA---- 337
VHRIGRT RA +G ++S V P +K F + K + D I + +L Q +
Sbjct: 413 VHRIGRTARAGRSGTAISFVVP--LKDFGKHKPSMCPTAKRDEKIFS--RILKQQSKLGL 468
Query: 338 -----------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 386
+E RYR ED ++VT++AVRE+R ++LR E+L SEKLK HFE NPK+L
Sbjct: 469 ELQPYSFDPKQIEGFRYRMEDGFRAVTQVAVREARIKELRQELLASEKLKRHFEENPKEL 528
Query: 387 DLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGP--RRK 444
L+HDK+L HL+ VP+YLL ++ K + K + +G +R+
Sbjct: 529 QSLRHDKELHPARVQQHLKRVPEYLLPDAAKQGGKKPRFV-PFHNPKKTRHNKGKVGKRR 587
Query: 445 FRKSDPLKSF 454
K+DPLK+F
Sbjct: 588 TAKADPLKNF 597
>gi|225684674|gb|EEH22958.1| ATP-dependent RNA helicase dbp9 [Paracoccidioides brasiliensis
Pb03]
Length = 885
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 255/451 (56%), Gaps = 58/451 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ LT + + R+ LA PD+VI+TPG +++ L + L LV+DEAD
Sbjct: 384 IRSANLTQKVSDAVQRSILADLPDVVISTPGRAVVNINSSALSL----ERLAHLVIDEAD 439
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE D++ L+ +PRG Q LMSAT SS+VD LK L NP IL L E D
Sbjct: 440 LVLSYGYEQDMQNLAKAVPRGVQTFLMSATFSSEVDTLKGLFCRNPVILKLEEKDDEG-- 497
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S
Sbjct: 498 ---AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSC 554
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT---------KEKDQSDE--GG----- 236
+LN+ELP NSR+H+++EFN G++D +IA DD + K +SDE GG
Sbjct: 555 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELPKKSKKPNRKSDEAPGGAGQED 614
Query: 237 --------------------HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
V SK+H K+ + ++G+ RGIDF++V V+NF++P
Sbjct: 615 SEENPDTKTSKDGAQDSSDEEVQEHPSKRHKKSVKEKDYGISRGIDFQDVACVLNFDLPT 674
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDS 324
A Y HRIGRTGRA TG ++S V P K E + + + + +
Sbjct: 675 TAKSYTHRIGRTGRAGKTGMALSFVVPSNQFGKHKPTSFPSAKRDEAVLAKITKRQAKAG 734
Query: 325 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 384
+ P+ + VE+ RYR D ++VT+IAV+E+RA+++R E+L SEKLK HFE NP+
Sbjct: 735 QEVKPYHFEMKQ-VEAFRYRMSDALRAVTRIAVQEARAREIRQELLKSEKLKRHFEENPE 793
Query: 385 DLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 415
+L L+HD +L +HL+ VPDYL+ K
Sbjct: 794 ELRQLRHDGELRAARVQAHLKHVPDYLMPTK 824
>gi|348676256|gb|EGZ16074.1| hypothetical protein PHYSODRAFT_506165 [Phytophthora sojae]
Length = 610
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 181/465 (38%), Positives = 278/465 (59%), Gaps = 36/465 (7%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
M L+ C+ V L + SM A +A L PD++++TPG + L G L +
Sbjct: 114 MELMYYCQDTVSLLALG-GQSMNAQ--QALLRDAPDVLVSTPGRLVAHLEAGNL---TLK 167
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
DS++ +V+DEADL+LS+GY +D++ + +P+ CQ MSAT S +++KLK+ +LHNP +
Sbjct: 168 DSVQTVVIDEADLVLSFGYGEDIRTIFNALPKACQTFCMSATLSPELEKLKRSVLHNPAV 227
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
+ L E +QQF++ DK L + LL+L +V K + F N+ D A+RL
Sbjct: 228 VKLEE------GATDGKLQQFYLPVKPADKDLLLYALLRLGVVSGKVIFFVNSTDAAYRL 281
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
KLF E+F IKSA+LNA+LP NSR HI+EEFN GLFDYLIATDD+ +++ +
Sbjct: 282 KLFFEQFVIKSAVLNAKLPHNSRQHIIEEFNRGLFDYLIATDDSVDRDEQE--------- 332
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
+K+ + + D +GV RG+DF+ V VIN + P++ Y HRIGRT R +G ++SL
Sbjct: 333 KKTVGSKRGRADEGYGVSRGVDFRGVQFVINVDFPKSVRAYTHRIGRTARGGASGTALSL 392
Query: 301 VS---PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNA--VESLRYRAEDVAKSVTKI 355
VS P E + + +++ +E +++IA LA + ++ RYR EDV ++VT++
Sbjct: 393 VSKDDPKEERALKRVQARQQAVRSESNDVIAQPAELAFDLKDIDCFRYRVEDVRRAVTRV 452
Query: 356 AVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 415
AVRE++ D++ E+LNSE+L AHF+ NP+DL++L+HDK + P HL +PDYL+ +
Sbjct: 453 AVREAQLADVKKEMLNSERLAAHFQANPRDLNMLEHDKVVGSAPVQPHLATIPDYLVPIE 512
Query: 416 TQEACKMVKLARAAMGNKNSSRRQ----GPRRKFRKSDPLKSFSA 456
Q +R + ++RQ G RR +DPL +F A
Sbjct: 513 LQPPAP----SRTKKKHNKHNKRQRLADGKRRT--DNDPLHTFVA 551
>gi|295674119|ref|XP_002797605.1| ATP-dependent RNA helicase DBP9 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280255|gb|EEH35821.1| ATP-dependent RNA helicase DBP9 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 607
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 177/451 (39%), Positives = 254/451 (56%), Gaps = 58/451 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ LT + + R+ LA PD+VI+TPG +++ L + L LV+DEAD
Sbjct: 106 IRSANLTQKVSDAVQRSILADLPDVVISTPGRAVVNINSSALSL----ERLAHLVIDEAD 161
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE D++ L+ +PRG Q LMSAT SS+VD LK L NP IL L E D
Sbjct: 162 LVLSYGYEQDMQNLAKAVPRGVQTFLMSATFSSEVDTLKGLFCRNPVILKLEEKDDEG-- 219
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S
Sbjct: 220 ---AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSC 276
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT---------KEKDQSDE----GGHVD 239
+LN+ELP NSR+H+++EFN G++D +IA DD + K +SDE G D
Sbjct: 277 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELPKKSKKPNRKSDEAPKGAGQED 336
Query: 240 SRK-----------------------SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
S + SK+H K+ + ++G+ RGIDF++V V+NF++P
Sbjct: 337 SEENSDTKTSKDGAQDSSDEEVQEHPSKRHKKSVKEKDYGISRGIDFQDVACVLNFDLPT 396
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE------------DS 324
A Y HRIGRTGRA TG ++S V P + SF +E
Sbjct: 397 TAKSYTHRIGRTGRAGKTGMALSFVVPSNQFGKHKPTSFPSAKRDEAVLAKITKRQVKAG 456
Query: 325 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 384
+ P+ + VE+ RYR D ++VT+IAV+E+RA+++R E+L SEKLK HFE NP+
Sbjct: 457 QEVKPYHFEMKQ-VEAFRYRMSDALRAVTRIAVQEARAREIRQELLKSEKLKRHFEENPE 515
Query: 385 DLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 415
+L L+HD +L +HL+ VPDYL+ K
Sbjct: 516 ELRQLRHDGELRAARVQAHLKHVPDYLMPTK 546
>gi|347838407|emb|CCD52979.1| similar to ATP-dependent RNA helicase dbp9 [Botryotinia fuckeliana]
Length = 607
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 184/490 (37%), Positives = 275/490 (56%), Gaps = 52/490 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R+ LA PDIVIATP +T L + + +V+DEAD
Sbjct: 128 VRAVNLTQRVSDAVQRSLLADSPDIVIATPARASLNANTSALSLTNLTH----MVIDEAD 183
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++DL+ ++ ++P+G Q +LMSAT +S+V+ LK L NP +L L E D +
Sbjct: 184 LVLSYGYDEDLQNVAKIMPKGVQTVLMSATLTSEVETLKGLFCRNPEVLKLEEAEDEGE- 242
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG +S
Sbjct: 243 ----GVSQFVVKCAEDEKFLLTYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRSC 298
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATD--------------DTQTKEKDQSDEGGH- 237
ILN++LP NSR+H++EEFN ++D +IA+D D + E D +DE
Sbjct: 299 ILNSQLPVNSRIHVVEEFNKNVYDIIIASDEHEVLGDEDEPKSGDAEEVEADDADEEKED 358
Query: 238 -VDSRKSKKHPK------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
D++K K P K D E+GV RGIDFKNV V+NF++P ++ Y HRIGRT R
Sbjct: 359 AKDAKKETKQPSKKKQKTGKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRTAR 418
Query: 291 AYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAV 338
A TG ++S V P E K E++ + + + + + P+ + V
Sbjct: 419 AGQTGMALSFVIPSEQYRKHKPTSIESAKNDEKVLAKIVKHQAKKGKEVKPYNFDMKQ-V 477
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 398
++ RYR D ++VT IAV+E++ +++R E++ S+KLK HFE NP DL L+HD +L
Sbjct: 478 DAFRYRMGDALRAVTSIAVQEAKTREIRQELMKSDKLKRHFEENPGDLYHLRHDGELRPA 537
Query: 399 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR--------RQGPRRKFRKSDP 450
+HL+ VPDYLL + ++ + M +R + R K RKSDP
Sbjct: 538 RVQAHLKHVPDYLLPKEGKKGITGGDVGFVGMHKTTENRIRKARAANKAKGRGKGRKSDP 597
Query: 451 LKSFSAEPTK 460
LK+F A+ K
Sbjct: 598 LKTFKAKSKK 607
>gi|327303856|ref|XP_003236620.1| ATP-dependent RNA helicase DBP9 [Trichophyton rubrum CBS 118892]
gi|326461962|gb|EGD87415.1| ATP-dependent RNA helicase DBP9 [Trichophyton rubrum CBS 118892]
Length = 613
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 192/505 (38%), Positives = 276/505 (54%), Gaps = 62/505 (12%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A E C + + LT + + RA LA PDIVI+TP ++ L D
Sbjct: 120 AFSEFCSKDI--RSGNLTQKVSDAVQRALLADLPDIVISTPARAIVNVNNSALAL----D 173
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
++ +V+DEADL+LSYGYE D++ L+ IPRG Q LMSAT +S+VD LK L +P IL
Sbjct: 174 TISQVVIDEADLVLSYGYEQDMQNLAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPAIL 233
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E D + QF + C+E DK L + KL+LV+ K +IF +D +RLK
Sbjct: 234 KLEEAEDEG-----AGISQFAVKCAEDDKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLK 288
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT-------KEKDQSD- 233
LFLE+FGIKS ILN+ELP NSR+H +EEFN G++D +IA DD + KE +S+
Sbjct: 289 LFLEQFGIKSCILNSELPANSRIHAVEEFNKGVYDIIIAADDQEVIGKIESKKETSESEV 348
Query: 234 --EGGHVDSRKSKKHPK----------------AKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ K P+ ++ + ++G+ RGIDF++V V+NF++P
Sbjct: 349 PITDAATEENKDLSEPEEVEEKLPPSNKKKRKKSEKEKDYGISRGIDFQDVACVLNFDLP 408
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------KIFEEIK---SFVGDDENEDSNI 326
A Y HRIGRTGRA TG ++S V P E+ IF K S + E + +
Sbjct: 409 TTAKSYTHRIGRTGRAGKTGMALSFVVPSELYGKHKPTIFPPAKNDESVLAKIEKRQAKM 468
Query: 327 ---IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 383
+ P+ + +E RYR D ++VT+IAV+E+RA+++R E++ SEKLK HFE NP
Sbjct: 469 GREVKPYH-FDKKQIEVFRYRMTDALRAVTRIAVQEARAKEIRQELVKSEKLKRHFEENP 527
Query: 384 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK-----TQEACKMV-------KLARAAMG 431
++L L+HD++L S L++VP+YL+ K T E V ++ +A
Sbjct: 528 QELRELRHDQELGSVRVQSQLKNVPEYLMPTKGKSSLTSEDIGFVGLHKKENRIRQARQK 587
Query: 432 NKNSSRRQGPRRKFRKSDPLKSFSA 456
N+ R R RK DPLKSF +
Sbjct: 588 NRARGRIAKKGRAGRKIDPLKSFKS 612
>gi|160380696|sp|A6SNX1.2|DBP9_BOTFB RecName: Full=ATP-dependent RNA helicase dbp9
Length = 607
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 184/490 (37%), Positives = 275/490 (56%), Gaps = 52/490 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R+ LA PDIVIATP +T L + + +V+DEAD
Sbjct: 128 VRAVNLTQRVSDAVQRSLLADSPDIVIATPARASLNANTSALSLANLTH----MVIDEAD 183
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++DL+ ++ ++P+G Q +LMSAT +S+V+ LK L NP +L L E D +
Sbjct: 184 LVLSYGYDEDLQNVAKIMPKGVQTVLMSATLTSEVETLKGLFCRNPEVLKLEEAEDEGE- 242
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG +S
Sbjct: 243 ----GVSQFVVKCAEDEKFLLTYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRSC 298
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATD--------------DTQTKEKDQSDEGGH- 237
ILN++LP NSR+H++EEFN ++D +IA+D D + E D +DE
Sbjct: 299 ILNSQLPVNSRIHVVEEFNKNVYDIIIASDEHEVLGDEDEPKSGDAEEVEADDADEEKED 358
Query: 238 -VDSRKSKKHPK------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
D++K K P K D E+GV RGIDFKNV V+NF++P ++ Y HRIGRT R
Sbjct: 359 AKDAKKETKQPSKKKQKTGKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRTAR 418
Query: 291 AYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAV 338
A TG ++S V P E K E++ + + + + + P+ + V
Sbjct: 419 AGQTGMALSFVIPSEQYRKHKPTSIESAKNDEKVLAKIVKHQAKKGKEVKPYNFDMKQ-V 477
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 398
++ RYR D ++VT IAV+E++ +++R E++ S+KLK HFE NP DL L+HD +L
Sbjct: 478 DAFRYRMGDALRAVTSIAVQEAKTREIRQELMKSDKLKRHFEENPGDLYHLRHDGELRPA 537
Query: 399 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR--------RQGPRRKFRKSDP 450
+HL+ VPDYLL + ++ + M +R + R K RKSDP
Sbjct: 538 RVQAHLKHVPDYLLPKEGKKGITGGDVGFVGMHKTTENRIRKARAANKAKGRGKGRKSDP 597
Query: 451 LKSFSAEPTK 460
LK+F A+ K
Sbjct: 598 LKTFKAKSKK 607
>gi|302653052|ref|XP_003018360.1| hypothetical protein TRV_07630 [Trichophyton verrucosum HKI 0517]
gi|291181997|gb|EFE37715.1| hypothetical protein TRV_07630 [Trichophyton verrucosum HKI 0517]
Length = 565
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 191/493 (38%), Positives = 274/493 (55%), Gaps = 66/493 (13%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 77
LT + + RA LA PDIVI+TP ++ L D++ +V+DEADL+LSY
Sbjct: 84 LTQKVSDAVQRALLADLPDIVISTPARAIVNVNNSALAL----DNISQVVIDEADLVLSY 139
Query: 78 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 137
GYE D++ L+ PRG Q LMSAT +S+VD LK L NP IL L E D
Sbjct: 140 GYEQDMQNLAKATPRGVQTFLMSATLTSEVDTLKGLFCRNPAILKLEEAEDEG-----AG 194
Query: 138 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 197
+ QF + C+E DK L + KL+LV+ K +IF +D +RLKLFLE+FGIKS ILN+E
Sbjct: 195 INQFAVKCAEDDKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIKSCILNSE 254
Query: 198 LPQNSRLHILEEFNAGLFDYLIATDDTQT-------KEKDQSDE---GGHVDSRKSKKHP 247
LP NSR+H +EEFN G++D +IA DD + K+ +S+E + K P
Sbjct: 255 LPANSRIHAVEEFNKGVYDIIIAADDQEVIGKIESNKKPSESEEPITDAATEENKDLSEP 314
Query: 248 K-----------------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
+ + + ++G+ RGIDF++V V+NF++P A Y HRIGRTGR
Sbjct: 315 EEVEEKAAPSNKNKKRKKSGKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGR 374
Query: 291 AYNTGASVSLVSPDEM------KIFEEIK---SFVGDDENEDSNI---IAPFPLLAQNAV 338
A TG ++S V P E+ IF K S + E + + + P+ + +
Sbjct: 375 AGKTGMALSFVVPSELYGKHKPTIFPPAKNDESVLAKIEKRQAKMGREVKPYH-FDKKQI 433
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 398
E RYR D ++VT+IAV+E+RA+++R E++ SEKLK HFE NP++L L+HD++L
Sbjct: 434 EVFRYRMTDALRAVTRIAVQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSV 493
Query: 399 PPASHLRDVPDYLLDAK-----TQEACKMV--------KLARAAMGNKNSSR--RQGPRR 443
S L++VP+YL+ K T E + V ++ +A NK R ++G R
Sbjct: 494 RVQSQLKNVPEYLMPTKGKSSLTSEDIRFVGLHKKKGNRIRQARQKNKARGRIAKKGSAR 553
Query: 444 KFRKSDPLKSFSA 456
RK DPLKSF +
Sbjct: 554 --RKIDPLKSFKS 564
>gi|164659008|ref|XP_001730629.1| hypothetical protein MGL_2425 [Malassezia globosa CBS 7966]
gi|159104525|gb|EDP43415.1| hypothetical protein MGL_2425 [Malassezia globosa CBS 7966]
Length = 576
Score = 307 bits (787), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 174/424 (41%), Positives = 245/424 (57%), Gaps = 31/424 (7%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A++ C+ VQ V + S+ AS + L+ PDIV+ATP CL +G L D
Sbjct: 111 AILTYCRDVVQ--VANIARSVKASVQKLLLSEKPDIVVATPSRALACLQSGDL---VIRD 165
Query: 62 SLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY 119
SL+ LV+DE DL+LSYGY+ D+KA+ + R Q LMSAT D + L+ L+L +P
Sbjct: 166 SLQSLVIDETDLVLSYGYDADVKAILHEGFLSRTHQTFLMSATLDDDTNALRGLMLKDPV 225
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
+L L D N+ Q+++ SE+DK L + +LKL L++ K L+F N ID +R
Sbjct: 226 VLRLEH-----DPTTAANLTQYYVYTSEQDKFLLVYVILKLRLIRGKCLLFVNDIDRCYR 280
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239
LKLFLE+FG+++ +LN ELP NSR HI+EEFN G +DY+IAT D E D +
Sbjct: 281 LKLFLEQFGLRTCVLNEELPVNSRFHIVEEFNKGKYDYIIAT-DVNAAELDPTPAKSSSS 339
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
+ + K EF V RGIDF V VINF++P + Y HRIGRT RA NTG ++S
Sbjct: 340 ASSKSQRSK-----EFSVSRGIDFVAVACVINFDLPTSTRAYTHRIGRTARAGNTGTALS 394
Query: 300 LVSP------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 347
+ P K E++ + D+ I P+ V++ RYR ED
Sbjct: 395 FIVPRSEFGQKKAIGCSTCKYDEQVWDRILADQKAHGLQIHPWN-YDHTQVDAFRYRMED 453
Query: 348 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 407
+SVTK+A++E+R Q+++ EILNSE LKAHFE NP+DL+ L+HD+ L +H++ V
Sbjct: 454 ALRSVTKVAIKEARIQEIKQEILNSEALKAHFEQNPRDLEYLRHDRALHPARVQAHMKHV 513
Query: 408 PDYL 411
P YL
Sbjct: 514 PSYL 517
>gi|154292863|ref|XP_001546999.1| hypothetical protein BC1G_14464 [Botryotinia fuckeliana B05.10]
Length = 676
Score = 307 bits (787), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 183/487 (37%), Positives = 274/487 (56%), Gaps = 52/487 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R+ LA PDIVIATP +T L + + +V+DEAD
Sbjct: 128 VRAVNLTQRVSDAVQRSLLADSPDIVIATPARASLNANTSALSLANLTH----MVIDEAD 183
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++DL+ ++ ++P+G Q +LMSAT +S+V+ LK L NP +L L E D +
Sbjct: 184 LVLSYGYDEDLQNVAKIMPKGVQTVLMSATLTSEVETLKGLFCRNPEVLKLEEAEDEGE- 242
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG +S
Sbjct: 243 ----GVSQFVVKCAEDEKFLLTYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTRSC 298
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATD--------------DTQTKEKDQSDEGGH- 237
ILN++LP NSR+H++EEFN ++D +IA+D D + E D +DE
Sbjct: 299 ILNSQLPVNSRIHVVEEFNKNVYDIIIASDEHEVLGDEDEPKSGDAEEVEADDADEEKED 358
Query: 238 -VDSRKSKKHPK------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
D++K K P K D E+GV RGIDFKNV V+NF++P ++ Y HRIGRT R
Sbjct: 359 AKDAKKETKQPSKKKQKTGKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRTAR 418
Query: 291 AYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAV 338
A TG ++S V P E K E++ + + + + + P+ + V
Sbjct: 419 AGQTGMALSFVIPSEQYRKHKPTSIESAKNDEKVLAKIVKHQAKKGKEVKPYNFDMKQ-V 477
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 398
++ RYR D ++VT IAV+E++ +++R E++ S+KLK HFE NP DL L+HD +L
Sbjct: 478 DAFRYRMGDALRAVTSIAVQEAKTREIRQELMKSDKLKRHFEENPGDLYHLRHDGELRPA 537
Query: 399 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR--------RQGPRRKFRKSDP 450
+HL+ VPDYLL + ++ + M +R + R K RKSDP
Sbjct: 538 RVQAHLKHVPDYLLPKEGKKGITGGDVGFVGMHKTTENRIRKARAANKAKGRGKGRKSDP 597
Query: 451 LKSFSAE 457
LK+F A+
Sbjct: 598 LKTFKAK 604
>gi|121716290|ref|XP_001275754.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus clavatus
NRRL 1]
gi|134034082|sp|A1C7F7.1|DBP9_ASPCL RecName: Full=ATP-dependent RNA helicase dbp9
gi|119403911|gb|EAW14328.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus clavatus
NRRL 1]
Length = 621
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 179/496 (36%), Positives = 278/496 (56%), Gaps = 63/496 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R LA PD++++TP + L + L D+L LV+DEAD
Sbjct: 132 VRSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGSSALAL----DNLTHLVIDEAD 187
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D+ AL+ IPRG Q LMSAT +S+VD LK L NP +L L D +DE
Sbjct: 188 LVLSYGYDEDINALAKAIPRGVQTFLMSATLTSEVDTLKGLFCRNPVVLKLE---DKEDE 244
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+L++ K +IF ID +R+KLFLE+FGIKS
Sbjct: 245 --GAGISQFVVRCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRVKLFLEQFGIKSC 302
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDD----------------TQTKEKDQSDEGG 236
+LN+ELP NSR+H+++EFN G++D +IA D+ T E++ D+ G
Sbjct: 303 VLNSELPINSRIHVVQEFNKGVYDIIIAADEQEVMGARTTFKKSKEITDGDEEETRDKMG 362
Query: 237 HV--------DSRKSKKHPKAKLDS-----EFGVVRGIDFKNVHTVINFEMPQNAAGYVH 283
D+ K HP+ + + ++G+ RGIDF+NV V+NF++P + Y H
Sbjct: 363 SSEDEDNEPEDNDKKSAHPEKRRKTSGKGKDYGISRGIDFQNVACVLNFDLPTTSKSYTH 422
Query: 284 RIGRTGRAYNTGASVSLVSP-DEM-----------KIFEEIKSFVGDDENEDSNIIAPFP 331
RIGRTGRA G ++S V P DE K E + + + + + + + P+
Sbjct: 423 RIGRTGRAGKAGMALSFVVPADEFGKHKPTSFPTAKYDESVLAKIVKRQAKLDHEVKPYH 482
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
+ V++ RYR D +SVT++A++E+RA+++R E++ SEKLK HFE NP++L L+H
Sbjct: 483 FEMKQ-VDAFRYRMTDALRSVTRLAIQEARAREIRQELVKSEKLKRHFEENPEELKQLRH 541
Query: 392 DKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK------- 444
D +L HL+ +PDYL+ +K ++ + ++ +R + R K
Sbjct: 542 DGELRAARIQPHLKHIPDYLMPSKGRKGISSENVGYVGFTKQSDNRIRKAREKNRGKGKG 601
Query: 445 -----FRKSDPLKSFS 455
RK DPLK+F+
Sbjct: 602 RKPSGVRKVDPLKTFN 617
>gi|115384408|ref|XP_001208751.1| hypothetical protein ATEG_01386 [Aspergillus terreus NIH2624]
gi|114196443|gb|EAU38143.1| hypothetical protein ATEG_01386 [Aspergillus terreus NIH2624]
Length = 637
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 178/494 (36%), Positives = 272/494 (55%), Gaps = 61/494 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R LA PD++++TP + L + L ++L LV+DEAD
Sbjct: 150 VRSVNLTQKVSDAVQRTMLADYPDLIVSTPSRVIANLGSSALSL----ENLTHLVIDEAD 205
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D+ AL+ IPRG Q LMSAT +++VD LK L +P IL L + D
Sbjct: 206 LVLSYGYDEDINALAKAIPRGVQTFLMSATLTAEVDTLKGLFCRSPVILKLEDKDDQGS- 264
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF +D +R+KLFLE+FGIKS
Sbjct: 265 ----GVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDVDRCYRVKLFLEQFGIKSC 320
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---------TKEKDQSDEG-------- 235
+LN+ELP NSRLH+++EFN G++D +IA D+ + +KE +++D G
Sbjct: 321 VLNSELPVNSRLHVVQEFNKGVYDIIIAADEQEVMGARKSKKSKEAEENDAGEAAGSSDE 380
Query: 236 ----------GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
D K+ A D ++G+ RGIDF+NV V+NF++P + Y HRI
Sbjct: 381 DEGEAQKPSTTRSDKPSEKRRKTAGKDKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRI 440
Query: 286 GRTGRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNI----------IAPFPLL 333
GRTGRA TG ++S V P + + SF DE + I + P+
Sbjct: 441 GRTGRAGKTGMALSFVVPADQFGKHKPTSFPTAKHDETVLAKITKRQAKLGHEVKPYH-F 499
Query: 334 AQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDK 393
V++ RYR D +S+T++AV+E+RA+++R E++ SEKLK HFE NP++L L+HD
Sbjct: 500 EMKQVDAFRYRMTDALRSITRLAVQEARAREIRQELIKSEKLKRHFEENPEELRQLRHDD 559
Query: 394 DLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR------- 446
+L HL+ +PDYL+ +K ++ + + +R + R K R
Sbjct: 560 ELRSARIQPHLKHIPDYLMPSKGKKGISSENVGYVGFRKTSENRIRKAREKNRGKGKGRN 619
Query: 447 -----KSDPLKSFS 455
K DPLK+F+
Sbjct: 620 YAGVKKVDPLKTFN 633
>gi|302502050|ref|XP_003013016.1| hypothetical protein ARB_00560 [Arthroderma benhamiae CBS 112371]
gi|291176578|gb|EFE32376.1| hypothetical protein ARB_00560 [Arthroderma benhamiae CBS 112371]
Length = 565
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 184/491 (37%), Positives = 269/491 (54%), Gaps = 62/491 (12%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY 77
LT + + RA LA PDIVI+TP ++ L D++ +V+DEADL+LSY
Sbjct: 84 LTQKVSDAVQRALLADLPDIVISTPARAIVNVNNSALAL----DNISQVVIDEADLVLSY 139
Query: 78 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 137
GYE D++ L+ IPRG Q LMSAT +S+VD LK L +P IL L E D
Sbjct: 140 GYEQDMQNLAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPAILKLEEAEDEG-----AG 194
Query: 138 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 197
+ QF + C+E DK L + KL+LV+ K +IF +D +RLKLFLE+FGIKS ILN+E
Sbjct: 195 ISQFAVKCAEDDKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIKSCILNSE 254
Query: 198 LPQNSRLHILEEFNAGLFDYLIATDDTQT----------KEKDQSDEGGHVDSRKSKKHP 247
LP NSR+H +EEFN G++D +IA DD + E+++ + K P
Sbjct: 255 LPANSRIHAVEEFNKGVYDIIIAADDQEVIGKIESNKKPSEREEPITDAATEENKDLSEP 314
Query: 248 K-----------------AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
+ + + ++G+ RGIDF++V V+NF++P A Y HRIGRTGR
Sbjct: 315 EEVEEKAAPSNKNKKRKKSGKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRTGR 374
Query: 291 AYNTGASVSLVSPDEM------KIFEEIK---SFVGDDENEDSNI---IAPFPLLAQNAV 338
A TG ++S V P E+ IF K S + E + + + P+ + +
Sbjct: 375 AGKTGMALSFVVPSELYGKHKPTIFPPAKNDESVLAKIEKRQAKMGREVKPYH-FDKKQI 433
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK 398
E RYR D ++VT+IAV+E+RA+++R E++ SEKLK HFE NP++L L+HD++L
Sbjct: 434 EVFRYRMTDALRAVTRIAVQEARAKEIRQELVKSEKLKRHFEENPQELRELRHDQELGSV 493
Query: 399 PPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK-------------F 445
S L++VP+YL+ K + + + + K +R + R+K
Sbjct: 494 RVQSQLKNVPEYLMPTKGKSSLTSEDIGVVGLHKKKGNRIRQARQKNKARGRIAKKGGAG 553
Query: 446 RKSDPLKSFSA 456
RK DPLKSF +
Sbjct: 554 RKIDPLKSFKS 564
>gi|406868160|gb|EKD21197.1| putative ATP-dependent RNA helicase dbp9 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 590
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 188/489 (38%), Positives = 280/489 (57%), Gaps = 57/489 (11%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 70
+++ V L + + LR+ LA PDIVIATP L+T +FS ++L LV+DE
Sbjct: 107 EIRAVNLAQKVSDAVLRSLLADSPDIVIATPARASMNLNTA-----AFSLENLAHLVIDE 161
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
ADL+LSYGY++DL+ ++ ++P+G Q +LMSAT +S+V+ LK L NP +L L +
Sbjct: 162 ADLVLSYGYDEDLQNVAKIMPKGVQTILMSATLTSEVETLKGLFCRNPVVLKL-----EE 216
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
EV + V QF + C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG +
Sbjct: 217 AEVEGEGVSQFVVKCAEDEKFLLAYVIFKLKLIKGKCIIFVGDIDRCYRLKLFLEQFGTR 276
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT-------KEKDQSDEGGHVDSRKS 243
S ILN+ELP NSR+H++EEFN ++D +IA+D+ + KE + ++E D +
Sbjct: 277 SCILNSELPVNSRIHVVEEFNKNVYDIIIASDEHEVLGDEDEPKEDNGTNEAVAEDGTAA 336
Query: 244 ---------------KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
KK K D E+GV RGIDFKNV V+NF++P ++ Y HRIGRT
Sbjct: 337 VKKDKNAEPAAQPSKKKRRTVKKDKEYGVSRGIDFKNVACVLNFDLPTSSKSYTHRIGRT 396
Query: 289 GRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQN 336
RA TG ++S V P E+ K E+I + + + + + P+ +
Sbjct: 397 ARAGQTGMALSFVIPKELYRKHKPTSIQSAKDDEKILAKIVKHQAKKGKEVKPYNFDMKQ 456
Query: 337 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 396
V++ RYR D ++VT IA+RE+R ++LR E++ SEKLK HFE NP+DL L+HD +L
Sbjct: 457 -VDAFRYRMGDALRAVTGIAIREARTRELRQELIKSEKLKRHFEENPEDLHHLRHDGELR 515
Query: 397 KKPPASHLRDVPDYLLDAKTQEACKMVKLA----RAAMGNKNSSRRQGPRRKF------- 445
SH++ VP+YLL + ++A ++ R N+ R R K
Sbjct: 516 AARVQSHMKHVPEYLLPKEGRKALTSGEIGFVGIRKTTDNRIRKARAVNRGKGKGKKVIG 575
Query: 446 RKSDPLKSF 454
RK DPLK+F
Sbjct: 576 RKMDPLKTF 584
>gi|187607828|ref|NP_001120553.1| DEAD (Asp-Glu-Ala-Asp) box helicase 56 [Xenopus (Silurana)
tropicalis]
gi|171846295|gb|AAI61488.1| LOC100145707 protein [Xenopus (Silurana) tropicalis]
Length = 552
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 188/459 (40%), Positives = 270/459 (58%), Gaps = 23/459 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+KV ++ S R L PDIV+ TP + L+ Q+ D+L+ LV+DEAD
Sbjct: 108 IKVADISGQADISAQRPILMEKPDIVVGTPS---RVLTHMTQQTICVRDTLQALVIDEAD 164
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+ S+G+E+DLK L +P+ Q LMSAT S DV LK+L+LHNP L L E
Sbjct: 165 LVFSFGFEEDLKNLLCQLPKIFQSFLMSATFSEDVQALKELVLHNPVTLKLEE------S 218
Query: 133 VIPKNVQ--QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
P + Q QF I C E DK L + TLLKL L++ K +IF N +D ++RLKLFLE+F I
Sbjct: 219 QFPDSSQLTQFHIQCEEEDKFLLLYTLLKLSLIRGKTIIFVNEVDRSYRLKLFLEQFSIP 278
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ +LN+ELP +SR HI+ +FN G +DY+IATD+ D S +G + +K +
Sbjct: 279 ACVLNSELPIHSRCHIISQFNQGFYDYIIATDEHSL--ADPSVKGRRGEGKKKGGKGQKG 336
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
D E+GV RGIDF+NV TV+NF+ PQ+ Y+HR GRT RA N G +++ V+ E+ +
Sbjct: 337 QDKEYGVSRGIDFQNVSTVLNFDFPQSVDSYIHRAGRTARANNPGVALTFVAHTELPLLS 396
Query: 311 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
E++ +G D +++ P+ + VE RYR D +SVTK A++E+R ++++ E+L
Sbjct: 397 EVEEALGGG-VPDEHVLKPYRFCMEE-VEGFRYRCRDAMRSVTKQAIKEARLKEIKEELL 454
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKM----VKLA 426
NSEKLK +FE NP+D LL+HDK L HL++VP+YL+ + + K
Sbjct: 455 NSEKLKTYFEDNPRDFQLLRHDKPLHPAIVKPHLKNVPEYLIPPALRAVADIHNRKRKRR 514
Query: 427 RAAMGNKNSSRRQGPRRKF-RKSDPLKSFSAEPTKRAGK 464
+ GN QG R KF R +PL+SF +KR K
Sbjct: 515 KLKAGNLGF---QGTRSKFQRGQNPLRSFKYAKSKRRRK 550
>gi|366992942|ref|XP_003676236.1| hypothetical protein NCAS_0D02940 [Naumovozyma castellii CBS 4309]
gi|342302102|emb|CCC69875.1| hypothetical protein NCAS_0D02940 [Naumovozyma castellii CBS 4309]
Length = 611
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 188/499 (37%), Positives = 279/499 (55%), Gaps = 57/499 (11%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
+I C ++ + + +++ M S L + LA P+I++ATPG + L T + S D
Sbjct: 122 MILYCSNEI--RQLNVSADMSNSVLTSLLASKPEILVATPGKLINILETNI--SSISLDE 177
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYI 120
LK LV+DE DL+L++GY+DDL +S +P + Q LMSAT + D+ +LKK +P I
Sbjct: 178 LKFLVIDEVDLVLTFGYQDDLNKISEYLPLKKNLQTFLMSATLNDDIQELKKKFCRSPAI 237
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
L + KD+ + Q+++ SE DK L + KL L++ K LIF N ID +RL
Sbjct: 238 LKFNDDEINKDQT---KLIQYYVKVSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRL 294
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQ-------- 231
KL LE+FGIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D+
Sbjct: 295 KLVLEQFGIKSCILNSELPANSRQHIVDQFNKNIYSLLIATDDTEYIKEEDELENESKVE 354
Query: 232 ------------------SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 273
+D+ +++ KK + D E+GV RG+DFKNV V+NF+
Sbjct: 355 DVSGEEKTEQNETLSTGNADDKVDINNDDKKKKQTFRKDKEYGVSRGVDFKNVACVLNFD 414
Query: 274 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA----- 328
+P + Y+HRIGRT RA +G ++S V P +K F + K + D I++
Sbjct: 415 LPTTSKSYIHRIGRTARAGQSGTAISFVVP--LKEFGKHKPSMCSTAKRDEKILSRIIKQ 472
Query: 329 ---------PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 379
P+ + VE RYR ED ++VT++AVRE+R ++L+ E+L SEKLK HF
Sbjct: 473 QSKLGLEMQPYSFDTKQ-VEGFRYRLEDGFRAVTQVAVREARVKELKQELLASEKLKRHF 531
Query: 380 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEA----CKMVKLARAAMGNKNS 435
E NPK+L L+HDK+L HL+ VP+YLL + + K V G K +
Sbjct: 532 EENPKELQSLRHDKELHPARVQQHLKRVPEYLLPESARSSDGKKIKFVPFHNVKKGRKGN 591
Query: 436 SRRQGPRRKFRKSDPLKSF 454
+ + +R+ KSDPLK+F
Sbjct: 592 KKGKVTKRRNGKSDPLKNF 610
>gi|134034084|sp|Q0CY48.2|DBP9_ASPTN RecName: Full=ATP-dependent RNA helicase dbp9
Length = 619
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 178/494 (36%), Positives = 273/494 (55%), Gaps = 61/494 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R LA PD++++TP + L + L ++L LV+DEAD
Sbjct: 132 VRSVNLTQKVSDAVQRTMLADYPDLIVSTPSRVIANLGSSALSL----ENLTHLVIDEAD 187
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D+ AL+ IPRG Q LMSAT +++VD LK L +P IL L + D
Sbjct: 188 LVLSYGYDEDINALAKAIPRGVQTFLMSATLTAEVDTLKGLFCRSPVILKLEDKDDQGS- 246
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF +D +R+KLFLE+FGIKS
Sbjct: 247 ----GVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDVDRCYRVKLFLEQFGIKSC 302
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---------TKEKDQSDEG-------- 235
+LN+ELP NSRLH+++EFN G++D +IA D+ + +KE +++D G
Sbjct: 303 VLNSELPVNSRLHVVQEFNKGVYDIIIAADEQEVMGARKSKKSKEAEENDAGEAAGSSDE 362
Query: 236 ----------GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
D K+ A D ++G+ RGIDF+NV V+NF++P + Y HRI
Sbjct: 363 DEGEAQKPSTTRSDKPSEKRRKTAGKDKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRI 422
Query: 286 GRTGRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNI----------IAPFPLL 333
GRTGRA TG ++S V P + + SF DE + I + P+
Sbjct: 423 GRTGRAGKTGMALSFVVPADQFGKHKPTSFPTAKHDETVLAKITKRQAKLGHEVKPYHFE 482
Query: 334 AQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDK 393
+ V++ RYR D +S+T++AV+E+RA+++R E++ SEKLK HFE NP++L L+HD
Sbjct: 483 MKQ-VDAFRYRMTDALRSITRLAVQEARAREIRQELIKSEKLKRHFEENPEELRQLRHDD 541
Query: 394 DLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR------- 446
+L HL+ +PDYL+ +K ++ + + +R + R K R
Sbjct: 542 ELRSARIQPHLKHIPDYLMPSKGKKGISSENVGYVGFRKTSENRIRKAREKNRGKGKGRN 601
Query: 447 -----KSDPLKSFS 455
K DPLK+F+
Sbjct: 602 YAGVKKVDPLKTFN 615
>gi|50304895|ref|XP_452403.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690379|sp|Q6CUI6.1|DBP9_KLULA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49641536|emb|CAH01254.1| KLLA0C04576p [Kluyveromyces lactis]
Length = 594
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 200/494 (40%), Positives = 279/494 (56%), Gaps = 56/494 (11%)
Query: 3 LIELCKGQVQLKVVQLTS-SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
LI C ++ K + L+S ++ + L++ L P+I+IATP + L + D
Sbjct: 114 LIVFCSQEI--KCLNLSSGNVSGNLLKSLLTENPEILIATPAKLVDLLDAQDVNI----D 167
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPY 119
LK LV+DE DL+L++GY++DL +S +P + Q LMSAT + D+ LK+ +P
Sbjct: 168 RLKFLVIDEVDLVLTFGYQEDLTKISERLPLRKSLQTFLMSATLNDDIQHLKQQFCRSPA 227
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
IL L + KD+ + Q+++ E DK L + KL L++ K LIF N ID +R
Sbjct: 228 ILKLNDDEVNKDQT---KLIQYYVKVGEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYR 284
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKD-----QSD 233
LKL LE+FGIKS ILN+ELP NSR HI+EEFN ++ LIATDDT+ KE+D +
Sbjct: 285 LKLVLEQFGIKSCILNSELPANSRQHIVEEFNKNVYQLLIATDDTEYIKEEDEDLESEKT 344
Query: 234 EGGHV-----------DSRKSKKHPKAKL--DSEFGVVRGIDFKNVHTVINFEMPQNAAG 280
E G V D+ K +K PK + D E+GV RG+DFKNV V+NF++P A
Sbjct: 345 EDGLVEVVDDSTVTTKDNAKKQKKPKLNVEKDKEYGVSRGVDFKNVACVLNFDLPTTAKS 404
Query: 281 YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA---------PFP 331
YVHRIGRT RA +G S+S V P +K F + K + +D I+ F
Sbjct: 405 YVHRIGRTARAGKSGISISFVVP--LKEFGKHKPSMIKSAKKDEKILGRIIKQQAKLGFE 462
Query: 332 LLAQN----AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 387
L N VE RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NP DL+
Sbjct: 463 LQPYNFDIKQVEGFRYRMEDGFRAVTQVAIREARIKELKQELLASEKLKRHFEENPHDLE 522
Query: 388 LLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR- 446
L+HDK+L HL+ VPDYLL ++ K + +KNS R+ G K +
Sbjct: 523 SLRHDKELHPARVQQHLKRVPDYLLPETARKDNKKIGFVPF---HKNSHRKNGRVVKKKG 579
Query: 447 ------KSDPLKSF 454
KSDPLKSF
Sbjct: 580 NVQRKGKSDPLKSF 593
>gi|448533726|ref|XP_003870686.1| DEAD-box helicase [Candida orthopsilosis Co 90-125]
gi|380355041|emb|CCG24557.1| DEAD-box helicase [Candida orthopsilosis]
Length = 570
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 177/461 (38%), Positives = 269/461 (58%), Gaps = 27/461 (5%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ ++ L+SS L + LA P+I+I+TP + + L + S++ L +DE
Sbjct: 117 KIGILNLSSSYSDQVLNSLLANKPEIIISTPNKLIQILEMNDEKIPIDLSSVRNLTIDEV 176
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+LS+GY +DL L + +P + Q LMSAT + D+++LK P IL L +
Sbjct: 177 DLILSFGYLEDLAKLESYLPVKKNLQTFLMSATINDDINELKTKFCTKPAILKLDDEQSS 236
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
D+++ QF+ +E DK L + KL L++ K ++F N ID +RLKLFLE+FGI
Sbjct: 237 NDKLV-----QFYAKTTEFDKFLLSYVIFKLNLIKGKTIVFVNNIDRGYRLKLFLEQFGI 291
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD---EGGHVDSRKSKKH 246
+ ILN+ELP NSRLHI+EEFN ++ LIATD+ EKD+ + E G ++ K
Sbjct: 292 RCCILNSELPINSRLHIVEEFNKNVYHLLIATDEISV-EKDEGENDVEEGKSAQKEETKS 350
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP--- 303
++K D E+GV RG+DFKNV V+NF++P + YVHRIGRT RA +G ++S V P
Sbjct: 351 KRSKKDKEYGVSRGVDFKNVACVLNFDLPTTSKAYVHRIGRTARAGKSGMALSFVIPLKE 410
Query: 304 ---------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTK 354
K E+I S + + ++ I P+ VE RYRA+D ++VT+
Sbjct: 411 VGKHKTATLSTAKRDEKILSKIVKQQEKNGFEIKPYQ-FDMKQVEGFRYRADDAFRAVTQ 469
Query: 355 IAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA 414
A+RE+R ++L+NE++NSEKLK F+ NP++L L+HDK+L +HL+++P+YLL
Sbjct: 470 TAIREARVKELKNELINSEKLKRFFQENPQNLASLRHDKELHPARVQAHLKNLPEYLLPE 529
Query: 415 KTQEACKMVKLARAAMGNK-NSSRRQGPRRKFRKSDPLKSF 454
+ K + NK N R++G + RK DPLK+F
Sbjct: 530 SARSDVKNIGFVPFHNKNKVNKYRKKGKSK--RKQDPLKTF 568
>gi|296812221|ref|XP_002846448.1| ATP-dependent RNA helicase DBP9 [Arthroderma otae CBS 113480]
gi|238841704|gb|EEQ31366.1| ATP-dependent RNA helicase DBP9 [Arthroderma otae CBS 113480]
Length = 617
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 194/511 (37%), Positives = 279/511 (54%), Gaps = 68/511 (13%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A E C + + LT + + RA LA PDIVI+TP ++ L D
Sbjct: 120 AFSEFCSKDI--RSGNLTQKVSDAVQRALLADMPDIVISTPARAIVNVNNSAL----VLD 173
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
++ +V+DEADL+LSYGYE D+++L+ IP G Q LMSAT +S+VD LK L +P IL
Sbjct: 174 NISQVVIDEADLVLSYGYEQDMQSLAKAIPHGVQTFLMSATLTSEVDTLKGLFCRSPAIL 233
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E D + QF + C+E +K L + KL+LV+ K +IF +D +RLK
Sbjct: 234 KLEEAEDEG-----AGISQFAVKCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLK 288
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT-------KEKDQSDE 234
LFLE+FGIKS ILN+ELP NSR+H ++EFN G++D +IA DD + KE +S +
Sbjct: 289 LFLEQFGIKSCILNSELPANSRIHAVQEFNKGVYDIIIAADDQEVIGKVESKKETVESKD 348
Query: 235 GGHVDSRKSK----------------------KHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G D+ + K K+ + ++G+ RGIDF++V V+NF
Sbjct: 349 GPVEDTATEEAKEELSEPEEVEEKTVLSNKNKKRKKSGKEKDYGISRGIDFQDVACVLNF 408
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------KIFEEIK---SFVGDDENED 323
++P A Y HRIGRTGRA TG ++S V P ++ IF K S + E
Sbjct: 409 DLPTTAKSYTHRIGRTGRAGKTGMALSFVVPSDLYGKHKPTIFPPAKNDESVLAKIEKRQ 468
Query: 324 SNI---IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 380
+ + + P+ + +E RYR D ++VT+IA++E+RA+++R E++ SEKLK HFE
Sbjct: 469 AKMGREVKPYH-FDKKQIEVFRYRMTDALRAVTRIAIQEARAKEIRQELVKSEKLKKHFE 527
Query: 381 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGNKNS 435
NP++L L+HD +L SHL+ VPDYL+ AK T E V L R + N+
Sbjct: 528 ENPQELRQLRHDDELGSVRVQSHLKHVPDYLMPAKGKSALTSEDIGFVGL-RKSKENRIR 586
Query: 436 SRRQGPRRK---------FRKSDPLKSFSAE 457
RQ R + RK DPLKSF ++
Sbjct: 587 QARQKNRARGRVAKKGGAGRKIDPLKSFKSK 617
>gi|401624490|gb|EJS42546.1| dbp9p [Saccharomyces arboricola H-6]
Length = 594
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 189/482 (39%), Positives = 267/482 (55%), Gaps = 53/482 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ + ++S M L L P+I++ TPG + L T + S S +D LK LV+DE D
Sbjct: 125 IRSLNISSDMSGPVLSTLLMDQPEIIVGTPGKLLDLLQTKI-DSISLND-LKFLVVDEVD 182
Query: 73 LLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
L+L++GY+DDL + +P + Q LMSAT + ++ LK+ +P IL
Sbjct: 183 LVLTFGYQDDLDKIGEYLPLKKKLQTFLMSATLNDEIQTLKQKFCRSPAILKF------N 236
Query: 131 DEVIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
DE I KN + Q+++ SE DK L+ + KL L++ K LIF N ID +RLKL +E+F
Sbjct: 237 DEEINKNQNKLLQYYVKVSEFDKFLFCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVMEQF 296
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQ--------------- 231
GIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D+
Sbjct: 297 GIKSCILNSELPINSRQHIVDQFNKNVYQLLIATDDTEYIKEEDEDIGEEHSSQNEEDKN 356
Query: 232 ---SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
E G S+K K + K D E+GV RG+DFKNV V+NF++P A YVHR+GRT
Sbjct: 357 LGTETENGQAPSKKKK--IQVKEDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRT 414
Query: 289 GRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLA 334
R TG ++S V P +K F + K + D I++ P+
Sbjct: 415 ARGGKTGTAISFVVP--LKEFGKHKPSMLQTAKRDEKILSRIIKQQSKLGLELQPYR-FD 471
Query: 335 QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD 394
Q VE RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+
Sbjct: 472 QEQVEGFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKE 531
Query: 395 LSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFR--KSDPLK 452
L HL+ VPDYLL + VK K R+G K + K DPLK
Sbjct: 532 LHPARVQQHLKRVPDYLLPESARGNGTKVKFVPFHNPKKRHPHRKGKVNKPKNGKVDPLK 591
Query: 453 SF 454
+F
Sbjct: 592 NF 593
>gi|449297989|gb|EMC94006.1| hypothetical protein BAUCODRAFT_112682 [Baudoinia compniacensis
UAMH 10762]
Length = 624
Score = 305 bits (781), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 194/516 (37%), Positives = 278/516 (53%), Gaps = 87/516 (16%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+++ L+ + A+ +A LA PDIV+ATP ++ +L+S D LK LV+DEA
Sbjct: 131 EIRYENLSKTEDAAVTKARLAETPDIVVATPARAVYWMNQSLLKS----DRLKYLVIDEA 186
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+LSYGYE+DL+ L+A +P G Q L+MSAT +++D L + + T PE+ D+
Sbjct: 187 DLVLSYGYEEDLQTLAAALPNGVQKLMMSATLRTEIDTLNSVFFADG---TKPEILDLSA 243
Query: 132 EVIPK--NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
E + + Q+ I E DK L I T+ KL+L++ K ++F I+ +R+KLFLE+FGI
Sbjct: 244 EEAAEKPTLAQYTIRTGEADKFLLIYTIFKLQLIKGKVILFVADIERCYRVKLFLEQFGI 303
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT---------KEKDQSDEGGHVDS 240
+S +LN+ELP NSRLH +EEFN G++D ++A D+ + + K + +E
Sbjct: 304 RSVVLNSELPVNSRLHAVEEFNKGVYDIIVAADEEEVVGQEEAKRKRRKLEIEEDVEGQE 363
Query: 241 RKSKKHP------------------KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 282
R S + P + + D EFGV RGIDF+NV V+NF++P + Y
Sbjct: 364 RPSAEQPPDEESIHHEVKQAANVRKRNRRDREFGVSRGIDFRNVTCVLNFDLPTTSKSYT 423
Query: 283 HRIGRTGRAYNTGASVSLVSPDEM----------------KIFEEIK---SFVG---DDE 320
HRIGRT RA TG ++S P + +I E I+ + VG +
Sbjct: 424 HRIGRTARAGQTGMALSFYVPKDQYRKHKSTSIPQTEHDERILERIRKRQASVGGSIQEW 483
Query: 321 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 380
N D + PF RYR D ++VT+IAVRE+R ++LR ++NSEKLK HFE
Sbjct: 484 NFDMAKLEPF-----------RYRFNDALRAVTRIAVREARTKELRQALINSEKLKRHFE 532
Query: 381 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEAC-KMVKLARAAMGNKNSSRRQ 439
NP+DL L+HD + HL+ VPDYLL A ++A K V G +NS R+
Sbjct: 533 ENPEDLRHLRHDAETHAVRRQEHLKHVPDYLLPAGGRQAVSKDVGFVGLKSGTENSLRK- 591
Query: 440 GPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGRNGD 475
RR F KS GKGRM R GR D
Sbjct: 592 --RRAFNKSR-------------GKGRMMR-GRGMD 611
>gi|358397310|gb|EHK46685.1| hypothetical protein TRIATDRAFT_132616 [Trichoderma atroviride IMI
206040]
Length = 656
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 190/476 (39%), Positives = 278/476 (58%), Gaps = 42/476 (8%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V+LT + + R+ L+ PDIVI+TP ++ S D L LVLDEAD
Sbjct: 186 VRAVKLTDKLTDAVQRSLLSTCPDIVISTPARAWHNVNGN--SSALALDKLAYLVLDEAD 243
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLIL--HNPYILTLPEVGDVK 130
LLLSYGY +DL++LS IP+G Q +MSAT +++VD LKK+ P +L L E D +
Sbjct: 244 LLLSYGYSEDLESLSWSIPKGIQTTMMSATLTTEVDSLKKIFYREQQPELLDLEE-PDAE 302
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
E V Q C E +K L I + KL+LV+ K +IF ID +RLKL+ E+FGI+
Sbjct: 303 GE----GVTQLVTKCGEDEKFLLIYVIFKLQLVKGKCIIFVADIDRCYRLKLYFEQFGIR 358
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT----------KEKDQSDEGGHVDS 240
S ILN+ELP NSR+H++EEFN ++D +IA+D+ + +E ++++ +S
Sbjct: 359 SCILNSELPVNSRIHVVEEFNRNVYDIIIASDEKEVLGNEEKAEEEQEDEENEGESKEES 418
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
R KK AK D E+GV RGIDFKNV VINF++P +A+ Y HRIGRT RA TG ++S
Sbjct: 419 RPKKKRKAAKGDVEYGVSRGIDFKNVAAVINFDLPTSASSYTHRIGRTARAGRTGMALSF 478
Query: 301 VSPDEM---KIFEEIKSFVGDD---------ENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
V P ++ I+ I S D+ + + + P+ ++ V++ RYR D
Sbjct: 479 VVPKDLYKKHIYTSIPSAENDEKILARITKQQAKKGKELNPYD-FNKDQVDAFRYRMNDA 537
Query: 349 AKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVP 408
++VTK+A+RE+R ++LR E+L SEKLK +FE NP +++ L+HD +L +HL+ VP
Sbjct: 538 LRAVTKVAIREARTRELRQELLKSEKLKRYFEENPTEMNHLRHDGELRTARQQAHLKHVP 597
Query: 409 DYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK--------FRKSDPLKSFSA 456
DYLL + ++ + + K RR G +RK RK DPLK+F A
Sbjct: 598 DYLLPKEGRQGIAAGDIGFVPL--KKHDRRAGTKRKGGGKRKVGARKGDPLKTFKA 651
>gi|425768045|gb|EKV06591.1| ATP dependent RNA helicase (Dbp9), putative [Penicillium digitatum
Pd1]
gi|425769672|gb|EKV08158.1| ATP dependent RNA helicase (Dbp9), putative [Penicillium digitatum
PHI26]
Length = 616
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 181/492 (36%), Positives = 277/492 (56%), Gaps = 62/492 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + R+ LA PDI+++TP + ++ L D + LV+DEAD
Sbjct: 134 IRSVNLTQKVSDEVQRSMLADFPDIIVSTPTRVYSNVNNSALTL----DKITHLVIDEAD 189
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++++ ALS IPRG Q LMSAT +S+VD LK L NP IL L E E
Sbjct: 190 LVLSYGYDEEINALSKAIPRGAQTFLMSATLTSEVDTLKDLYCRNPVILKLEE-----KE 244
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF +D +R+KLFLE+FG+KS
Sbjct: 245 EKGAGVSQFVVRCTEDEKFLLTYVIFKLQLIKGKVIIFVADVDRCYRVKLFLEQFGLKSC 304
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ----TKEKD----------------QS 232
+LN+ELP NSR+H++EEFN G++D ++A D+ + TK K S
Sbjct: 305 VLNSELPINSRIHVVEEFNKGVYDIIVAADEQEVLGVTKSKKSREVKEADEEAKEEIGSS 364
Query: 233 DEGGHVDSRKSKKHPKAK-------LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
++ VD +K P+AK + ++ + RGIDF+NV V+NF++P ++ Y HRI
Sbjct: 365 EDEEAVDENGKEKKPEAKKRRKMTSKEKDYSIARGIDFQNVACVLNFDLPTSSKSYTHRI 424
Query: 286 GRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLL 333
GRTGRA G ++S V P E K E + + + +++ + + P+
Sbjct: 425 GRTGRAGKAGMALSFVIPTEQYGKHRPTSIPSTKHDEAMLAKIIKRQSKLGHEVKPYH-F 483
Query: 334 AQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDK 393
V++ RYR D +SVT++AV+E+R +++R E++ SEKLK HFE NP +L L+HD
Sbjct: 484 EMTQVDAFRYRMTDALRSVTRLAVQEARGREIRQELIKSEKLKRHFEENPDELRQLRHDG 543
Query: 394 DLSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGNKNSSRRQGPRRKFR-- 446
+L +HL+ VPDYL+ AK ++E+ V ++ +N R+ R + R
Sbjct: 544 ELRAARVQAHLKHVPDYLMPAKGRKGLSKESVGFVGFTKS---KQNRIRKARDRNRARGK 600
Query: 447 ---KSDPLKSFS 455
K DPLK+F+
Sbjct: 601 SGGKVDPLKTFN 612
>gi|365990357|ref|XP_003672008.1| hypothetical protein NDAI_0I01960 [Naumovozyma dairenensis CBS 421]
gi|343770782|emb|CCD26765.1| hypothetical protein NDAI_0I01960 [Naumovozyma dairenensis CBS 421]
Length = 608
Score = 304 bits (778), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 189/502 (37%), Positives = 277/502 (55%), Gaps = 62/502 (12%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
+I C + + + ++S + S L + L P+I+I+TPG + L T + S + D
Sbjct: 118 MILFCSNDI--RYLNISSDISNSVLSSLLTNRPEIIISTPGKLMNVLETKI-TSITLED- 173
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYI 120
LK LV+DE DL+L++GY++DL +S +P + Q LMSAT + D+ +LK+ +P I
Sbjct: 174 LKFLVIDEVDLVLTFGYQEDLNKISEYLPLKKNLQTFLMSATLNDDIQQLKQKFCRSPAI 233
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
L + KD+ + Q+++ SE DK L + KL L++ K L+F N ID +RL
Sbjct: 234 LKFNDDEINKDQT---KLIQYYVKVSEFDKFLMCYVIFKLGLIKGKTLLFVNNIDRGYRL 290
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT---------------- 224
KL LE+FGIKS ILN+ELP NSR HI+++FN +++ LIATDDT
Sbjct: 291 KLVLEQFGIKSCILNSELPANSRQHIVDQFNKNIYNLLIATDDTEYIKEEEDEDEDEGDS 350
Query: 225 ---QTKEKDQSDEG--GHVDS-------RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
+T KD+ + G G DS K+ K + D E+GV RG+DFKNV V+NF
Sbjct: 351 KGDETNAKDKVEVGVEGKDDSTKESETQNKNNNKQKTRKDKEYGVSRGVDFKNVACVLNF 410
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA---- 328
++P A Y+HRIGRT RA +G ++S V P +K + + K + D I++
Sbjct: 411 DLPTTAKSYIHRIGRTARAGKSGTAISFVVP--LKEYGKHKPSMCQTTKRDEKILSRIIK 468
Query: 329 ----------PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 378
P+ + VE RYR ED ++VT++AVRE+R ++L+ E+L SEKLK H
Sbjct: 469 QQSKLGLEMQPYSFDTKQ-VEGFRYRLEDGFRAVTQVAVREARIKELKQELLTSEKLKRH 527
Query: 379 FEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR 438
FE NPK+L L+HDK+L HL+ VP+YLL ++ K V N SRR
Sbjct: 528 FEENPKELQSLRHDKELHSARVQQHLKRVPEYLLPEAARKGGKKVNF--VPFHNPKKSRR 585
Query: 439 Q------GPRRKFRKSDPLKSF 454
+R+ KSDPLK+F
Sbjct: 586 NGKKGGKVGKRRTGKSDPLKNF 607
>gi|225563337|gb|EEH11616.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus G186AR]
Length = 624
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 169/445 (37%), Positives = 255/445 (57%), Gaps = 52/445 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ LT + + RA LA PDIV++TP +++ L + L LV+DEAD
Sbjct: 129 IRSANLTQKVSDAVQRALLADLPDIVVSTPARAVANVNSSALSL----ERLTHLVIDEAD 184
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE+D++ L+ +PRG Q LMSAT +S+VD LK L NP +L L E D
Sbjct: 185 LVLSYGYEEDMQNLAKAVPRGVQTFLMSATFTSEVDTLKGLFCRNPVVLKLEEKEDEG-- 242
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S
Sbjct: 243 ---AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSC 299
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDT------------QTKEKDQSDEGGHVD- 239
+LN+ELP NSR+H+++EFN G++D +IA DD Q ++ DQS D
Sbjct: 300 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELRKNSKKQPRKSDQSSRDSEYDG 359
Query: 240 -----------------SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 282
++ SK+ K+ + ++G+ RGIDF+NV V+NF++P + Y
Sbjct: 360 AQASKNNDQYSSEDDAETQPSKRPKKSAKEKDYGISRGIDFQNVACVLNFDLPTTSKSYT 419
Query: 283 HRIGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPF 330
HRIGRTGRA TG ++S V P + K E + S + + + + P+
Sbjct: 420 HRIGRTGRAGKTGMALSFVIPSDQFGKHKPTSIPSAKHDEAMLSKIIKRQGKLGREVKPY 479
Query: 331 PLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 390
+ V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++L L+
Sbjct: 480 HFDMKQ-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRQLR 538
Query: 391 HDKDLSKKPPASHLRDVPDYLLDAK 415
HD +L +HL+ VPDYL+ K
Sbjct: 539 HDGELRAARVQAHLKHVPDYLMPTK 563
>gi|315051032|ref|XP_003174890.1| ATP-dependent RNA helicase DBP9 [Arthroderma gypseum CBS 118893]
gi|311340205|gb|EFQ99407.1| ATP-dependent RNA helicase DBP9 [Arthroderma gypseum CBS 118893]
Length = 616
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 190/510 (37%), Positives = 279/510 (54%), Gaps = 67/510 (13%)
Query: 2 ALIELC-KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
A E C KG ++ LT + + RA LA PDIVI+TP V S
Sbjct: 120 AFSEFCSKG---IRSGNLTQKVSDAVQRALLADLPDIVISTPARA----VVNVNNSALVL 172
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
D + +V+DEADL+LSYGYE D+++L+ IPRG Q LMSAT +S+VD LK L +P I
Sbjct: 173 DDISQVVIDEADLVLSYGYEQDMQSLAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPAI 232
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
L L E D + QF + C+E +K L + KL+LV+ K +IF +D +RL
Sbjct: 233 LKLEEAEDEG-----AGISQFAVKCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRL 287
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD------TQTKEKDQSDE 234
KLFLE+FGIKS ILN+ELP NSR+H ++EFN G++D +IA DD ++K++ E
Sbjct: 288 KLFLEQFGIKSCILNSELPANSRIHAVQEFNKGVYDIIIAADDQEVIGKVESKKEPVGSE 347
Query: 235 GGHV------------DSRKSKKHP----------KAKLDSEFGVVRGIDFKNVHTVINF 272
V D + ++ P K+ + ++G+ RGIDF++V V+NF
Sbjct: 348 DATVTDAVAEESKDLSDPEEVEEKPAPSNKNKKRKKSGKEKDYGISRGIDFQDVACVLNF 407
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------KIFEEIK---SFVGDDENED 323
++P A Y HRIGRTGRA TG ++S V P E+ IF K S + E
Sbjct: 408 DLPTTAKSYTHRIGRTGRAGKTGMALSFVVPSELYGKHKPTIFPPAKNDESVLAKIEKRQ 467
Query: 324 SNI---IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 380
+ + + P+ + +E RYR D ++VT+IA++E+RA+++R E++ SEKLK HFE
Sbjct: 468 AKMGREVKPYH-FDKKQIEVFRYRMTDALRAVTRIAIQEARAKEIRQELVKSEKLKRHFE 526
Query: 381 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG 440
NP++L L+HD++L S L+ VP+YL+ K + + + + K +R +
Sbjct: 527 ENPQELRELRHDQELGSVRVQSQLKSVPEYLMPTKGKSSLTSEDIGFVGLHKKKENRIRQ 586
Query: 441 PRRK-------------FRKSDPLKSFSAE 457
R+K RK DPLKSF ++
Sbjct: 587 ARQKNRARGRIAKKGGAGRKVDPLKSFKSK 616
>gi|240275931|gb|EER39444.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus H143]
Length = 621
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 257/445 (57%), Gaps = 52/445 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R+ LA PDIV++TP +++ L + L LV+DEAD
Sbjct: 126 VRSVNLTQKVSDAVQRSLLADLPDIVVSTPARAVTNVNSSALSL----ERLTHLVIDEAD 181
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L E D
Sbjct: 182 LVLSYGYEEDMQSLAKAVPRGVQTFLMSATFTSEVDTLKGLFCRNPVVLKLEEKEDEG-- 239
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S
Sbjct: 240 ---AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSC 296
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDT------------QTKEKDQSDEGGHVD- 239
+LN+ELP NSR+H+++EFN G++D +IA DD Q ++ DQS D
Sbjct: 297 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELRKNSKKQPRKSDQSSRDSEYDG 356
Query: 240 -----------------SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 282
++ SK+ K+ + ++G+ RGIDF+NV V+NF++P + Y
Sbjct: 357 AQPSNNNDQYSSEDDAETQPSKRPKKSAKEKDYGISRGIDFQNVACVLNFDLPTTSKSYT 416
Query: 283 HRIGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPF 330
HRIGRTGRA +G ++S V P + K E + S + + + + P+
Sbjct: 417 HRIGRTGRAGKSGMALSFVIPSDQFGKHKPTSIPSAKHDEAMLSKIIKRQGKLGREVKPY 476
Query: 331 PLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 390
+ V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++L L+
Sbjct: 477 HFDMKQ-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRELR 535
Query: 391 HDKDLSKKPPASHLRDVPDYLLDAK 415
HD +L +HL+ VPDYL+ K
Sbjct: 536 HDGELRAARVQAHLKHVPDYLMPTK 560
>gi|325093293|gb|EGC46603.1| ATP-dependent RNA helicase DBP9 [Ajellomyces capsulatus H88]
Length = 621
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 257/445 (57%), Gaps = 52/445 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R+ LA PDIV++TP +++ L + L LV+DEAD
Sbjct: 126 VRSVNLTQKVSDAVQRSLLADLPDIVVSTPARAVTNVNSSALSL----ERLTHLVIDEAD 181
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L E D
Sbjct: 182 LVLSYGYEEDMQSLAKAVPRGVQTFLMSATFTSEVDTLKGLFCRNPVVLKLEEKEDEG-- 239
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S
Sbjct: 240 ---AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSC 296
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDT------------QTKEKDQSDEGGHVD- 239
+LN+ELP NSR+H+++EFN G++D +IA DD Q ++ DQS D
Sbjct: 297 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELRKNSKKQPRKSDQSSRDSEYDG 356
Query: 240 -----------------SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 282
++ SK+ K+ + ++G+ RGIDF+NV V+NF++P + Y
Sbjct: 357 AQPSNNNDQYSSEDDAETQPSKRPKKSAKEKDYGISRGIDFQNVACVLNFDLPTTSKSYT 416
Query: 283 HRIGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPF 330
HRIGRTGRA +G ++S V P + K E + S + + + + P+
Sbjct: 417 HRIGRTGRAGKSGMALSFVIPSDQFGKHKPTSIPSAKHDEAMLSKIIKRQGKLGREVKPY 476
Query: 331 PLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 390
+ V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++L L+
Sbjct: 477 HFDMKQ-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRELR 535
Query: 391 HDKDLSKKPPASHLRDVPDYLLDAK 415
HD +L +HL+ VPDYL+ K
Sbjct: 536 HDGELRAARVQAHLKHVPDYLMPTK 560
>gi|380494042|emb|CCF33441.1| ATP-dependent RNA helicase DBP9 [Colletotrichum higginsianum]
Length = 594
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 181/471 (38%), Positives = 279/471 (59%), Gaps = 39/471 (8%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ ++L + + R+ L+ PD+VI+TP + + + L D+L ++LDEAD
Sbjct: 133 IHAIKLVDKISDAVQRSLLSNFPDVVISTPATAWRNIVSEALSL----DNLTCMILDEAD 188
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY +DL+ ++ +P+G Q +MSAT S+DV L+ + P +L L + +E
Sbjct: 189 LILSYGYNEDLENIARKLPKGVQLTMMSATLSTDVTSLQGIFGRKPTVLDLDD-----EE 243
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
++ QF +SC E +K L + KL+LV+ K LIF N +D ++RLKLFLE+F ++S
Sbjct: 244 TEGDSLSQFVVSCGEDEKFLLAFIIFKLKLVKGKCLIFVNDVDRSYRLKLFLEQFQVRSC 303
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---TKEKDQSDEGG----HVDSRKSKK 245
ILN+ELP SR H+LEEFN G++D +IA+D+ +EKD E G + +SKK
Sbjct: 304 ILNSELPVTSRAHVLEEFNRGVYDIIIASDEKSAMGAEEKDVEGEEGTEQPEKEKEQSKK 363
Query: 246 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
K+K D+EFGV RGIDFKNV V+NF++P +A+ Y HRIGRT RA TG ++S P E
Sbjct: 364 KRKSKRDAEFGVSRGIDFKNVAAVVNFDLPTSASSYTHRIGRTARAGRTGMALSFYVPSE 423
Query: 306 M------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVT 353
+ + E+I + + + + + P+ ++ +++ RYR +D ++VT
Sbjct: 424 LYRKHLPTSIETAENDEKILARIKKQQAKQGKEVKPYNFKKEH-LDAFRYRLDDALRAVT 482
Query: 354 KIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL- 412
K+AVRE+R ++L+ E+L SEKLK +FE NP +L L+HD +L HL+ +P+YLL
Sbjct: 483 KVAVREARMRELKQELLKSEKLKRYFEENPTELQHLRHDGELRTARQQPHLKHIPEYLLP 542
Query: 413 ----DAKTQEACKMVKLARAAMGNKNSSRRQGPRRK---FRKSDPLKSFSA 456
D+ T+ MV + +G K + P RK RK +PLK+F A
Sbjct: 543 KEGKDSLTKNDIGMVPFRK--IGGKQRRSKGKPGRKKIGTRKVNPLKTFKA 591
>gi|440633789|gb|ELR03708.1| ATP-dependent RNA helicase dbp9 [Geomyces destructans 20631-21]
Length = 620
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 183/502 (36%), Positives = 280/502 (55%), Gaps = 72/502 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ + LT + + R+ LA PDIV+ATP ++T L D+L LV+DEAD
Sbjct: 127 VRAINLTQKVSDAVQRSLLADAPDIVVATPARAALNINTSALSL----DNLTHLVIDEAD 182
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++DL+ ++ + +G Q +LMSAT +S+VD LK L NP +L L E D +E
Sbjct: 183 LVLSYGYDEDLQNVAKTMRKGVQTILMSATLTSEVDTLKGLFCRNPAVLKLDEQNDEGEE 242
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ Q+ + C+E +K L I + KL+L++ K ++F ID +RLKLFLE+FGIKS
Sbjct: 243 I-----SQYVVKCAEDEKFLLIYVIFKLKLIKGKCIVFVQDIDRCYRLKLFLEQFGIKSC 297
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT--KEKD-----QSDEGGHVDSRKSKK 245
ILN+ELP NSR+H++ EFN ++D +IA+D+ + E+D + +E + +K+
Sbjct: 298 ILNSELPVNSRIHVVAEFNKNVYDIIIASDEYEIIGDEEDAPRVQELEEATPEEPKKAAG 357
Query: 246 HPKAKLD------------------------SEFGVVRGIDFKNVHTVINFEMPQNAAGY 281
+ ++D E+GV RGIDFKNV V+NF+ P + Y
Sbjct: 358 DDEMEVDVAESEEVVKEEKPAKKKRKQAKRDKEYGVSRGIDFKNVACVLNFDFPTTSKSY 417
Query: 282 VHRIGRTGRAYNTGASVSLVSP------------DEMKIFEEIKSFVGDDENEDSNIIAP 329
HR+GRTGRA +G ++S V P + K EE+ + + + + + P
Sbjct: 418 THRVGRTGRAGQSGMALSFVIPADQYRKHKPTSVESCKHDEEVLAKIIRHQTKKGKEVKP 477
Query: 330 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLL 389
+ + VE+ RYR D ++VT+IAVRE+R ++LR E++ S+KLK HFE NP+DL L
Sbjct: 478 YNFDMKQ-VEAFRYRMGDALRAVTRIAVREARTRELRQELMKSDKLKRHFEENPEDLHHL 536
Query: 390 KHDKDLSKKPPASHLRDVPDYLLDAKTQEAC--------------KMVKLARAAMGNKNS 435
+HD +L H++ VP YL+ + Q+A ++ ARAA N
Sbjct: 537 RHDGELRAAKVQGHMKHVPSYLMPSGGQKAITGELGIVGIRKESENRIRKARAA----NK 592
Query: 436 SRRQGP-RRKFRKSDPLKSFSA 456
S+ +G K ++ DPLKSF A
Sbjct: 593 SKGRGAFGSKAKRHDPLKSFRA 614
>gi|258565271|ref|XP_002583380.1| ATP-dependent helicase [Uncinocarpus reesii 1704]
gi|237907081|gb|EEP81482.1| ATP-dependent helicase [Uncinocarpus reesii 1704]
Length = 607
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 184/496 (37%), Positives = 276/496 (55%), Gaps = 63/496 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS---DSLKILVLD 69
L+ LT + + RA LA PDIV++TP + V+ + + S D+L LV+D
Sbjct: 124 LQTANLTQKVSDAVQRAILADLPDIVVSTP-------ARAVVNANNSSLALDNLTHLVID 176
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EADL+LSYGYE D++ L+ IPRG Q LLMSAT +S+VD LK L +P L L E D
Sbjct: 177 EADLVLSYGYEQDMQHLAKSIPRGVQTLLMSATLTSEVDTLKGLFCRSPVTLKLEEAEDE 236
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+ QF + C+E +K L + KL+LV+ K +IF +D ++RLKLFLE+FGI
Sbjct: 237 G-----AGISQFAVKCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRSYRLKLFLEQFGI 291
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT-------KEKDQSDEGGH----- 237
KS +LN+ELP NSR+H+++EFN G++D +IA DD + + KD + E +
Sbjct: 292 KSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVVGEVPRKQPKDSNREAQNSADEA 351
Query: 238 ---------VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
VD KK K+ + ++G+ RGIDF++V V+NF++P A Y HRIGRT
Sbjct: 352 QKGLSEDEEVDRPPVKKRKKSSKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIGRT 411
Query: 289 GRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNA--------- 337
GRA TG ++S + P E+ + SF DE + I+ L +
Sbjct: 412 GRAGKTGMALSFIVPSELYGKHKPTSFPTAKHDETVLAKIVKRQAKLGREVKPYNFDTKQ 471
Query: 338 VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK 397
+++ RYR D ++VT++AV+E+RA++++ E+L SEKLK HFE NP++L L+HD +L
Sbjct: 472 IDAFRYRMTDALRAVTRVAVQEARAKEIKQELLKSEKLKRHFEENPEELRQLRHDGELRP 531
Query: 398 KPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKS--------- 448
+HL+ VP+YL+ AK + + + N +R + R + R
Sbjct: 532 ARVQAHLKHVPEYLMPAKGKAGLTSGDVGFVGLKKTNENRIRKARDRNRMRGKGGKRGGR 591
Query: 449 -------DPLKSFSAE 457
DPLK+F ++
Sbjct: 592 GGGGRKVDPLKTFKSK 607
>gi|397565637|gb|EJK44705.1| hypothetical protein THAOC_36732 [Thalassiosira oceanica]
Length = 698
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 178/461 (38%), Positives = 261/461 (56%), Gaps = 46/461 (9%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
PDIV+ATP + + G+L K S++ LV+DEADL+LS+GY DD+ + +PR C
Sbjct: 161 PDIVVATPAGLVANVRAGLLDLKR---SVETLVVDEADLILSFGYADDVTEIMKALPRTC 217
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEV-GDVKDEVIPKNVQQFWISCSERDKLLY 153
Q LMSAT S +++KLK ++LH+P +L L E G N+ QF++ +D+ L
Sbjct: 218 QGFLMSATISPELNKLKGVVLHSPAVLKLEEDDGAELANAREGNLMQFYLDLPSKDRYLL 277
Query: 154 ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ LKL L++ K L F N+ID +RLKLFLE+F I+SA+LN+ELP SRL+I+E FN G
Sbjct: 278 VYVFLKLGLLRGKGLFFVNSIDGGYRLKLFLEQFHIRSAVLNSELPLKSRLNIIEHFNVG 337
Query: 214 LFDYLIATDDTQTKEKDQSDEG------GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
FDYLIATD+ + +E + +K K + D E+G RG+DF+ V
Sbjct: 338 NFDYLIATDEATHRRSRSENESGGGGGDDGGRKKSRRKSEKRRRDGEYGASRGLDFRGVS 397
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 327
V+NF+MP N Y HRIGRT R +G +++LV + + EE ++ + E++ S
Sbjct: 398 FVVNFDMPPNPESYTHRIGRTARGGASGVALTLV---DGSVAEEAETLLDIQESQPSRSA 454
Query: 328 A-----------------------------PFPL-LAQNAVESLRYRAEDVAKSVTKIAV 357
A P PL +E RYR EDV ++VT++AV
Sbjct: 455 AGSGDGELREAADDGAGMEGSGVHPQVQAQPGPLEFDLKEIEGFRYRVEDVNRAVTRVAV 514
Query: 358 RESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA-SHLRDVPDYLLDAKT 416
+E+RA +++ EILNSE+L+AHFE NP DL LL+HD+ + SHL++VP YLL
Sbjct: 515 KETRAAEVKAEILNSERLQAHFEANPADLQLLQHDRQATHVSKVQSHLKNVPGYLLPRGM 574
Query: 417 QEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAE 457
Q A V R ++ R R++ + +DPL++F +
Sbjct: 575 QVAN--VSRKRRKKKTRSQQRAAAGRQRNKSNDPLQTFDGD 613
>gi|45201374|ref|NP_986944.1| AGR278Cp [Ashbya gossypii ATCC 10895]
gi|74691680|sp|Q74ZC1.1|DBP9_ASHGO RecName: Full=ATP-dependent RNA helicase DBP9
gi|44986308|gb|AAS54768.1| AGR278Cp [Ashbya gossypii ATCC 10895]
gi|374110194|gb|AEY99099.1| FAGR278Cp [Ashbya gossypii FDAG1]
Length = 595
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 192/490 (39%), Positives = 279/490 (56%), Gaps = 49/490 (10%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L+ C ++L + +++++ S L LA P+I+I+TP + K L LQ+ S D
Sbjct: 116 LVLYCSKDIRL--LNISANVDDSVLGPLLAENPEIIISTPSQLVKILEGKHLQTISLRD- 172
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYI 120
L+ LV+DE DL+L++GY++DL +S +P + Q LMSAT + ++ +LK +P I
Sbjct: 173 LRFLVIDEVDLILTFGYQEDLLKISQYLPLKKNLQAFLMSATLNEEIQELKTKFCRSPAI 232
Query: 121 LTLPEVGDVKDEVIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
L L D+ I KN + Q+++ SE DK L + KL L++ K +IF NTID
Sbjct: 233 LKL------NDDEINKNKNKLLQYYVKVSEFDKFLLCYVIFKLSLIKGKTIIFVNTIDRG 286
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ------ 231
+RLKL LE+FGI+S ILN+ELP NSR HI++EFN ++ LIATDD + E++
Sbjct: 287 YRLKLVLEQFGIRSCILNSELPLNSRQHIVDEFNKNVYQLLIATDDNEYIEEEDEETVEA 346
Query: 232 SDEGGH-----------VDSRKSKKHPK---AKLDSEFGVVRGIDFKNVHTVINFEMPQN 277
+EG + S+ S + K AK D E+G RG+DF+NV V+NF++P
Sbjct: 347 GEEGSEKLEEGGEKLEEITSKTSSTNGKQKIAKKDKEYGASRGVDFQNVSCVLNFDLPTT 406
Query: 278 AAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------- 328
A YVHRIGRT RA +G ++S V P +K + + K + +D I+A
Sbjct: 407 AKSYVHRIGRTARAGKSGTAISFVVP--LKEYGKHKPSMLVTAKKDEKILARVIKQQSKL 464
Query: 329 PFPLLAQN----AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 384
F + N +E RYR ED ++VT++AVRE+R ++L+ E+L SEKLK HFE NP
Sbjct: 465 GFQIEPYNFDVKQIEGFRYRMEDGFRAVTQVAVREARVKELKQELLASEKLKRHFEENPH 524
Query: 385 DLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK 444
DLD L+HDK+L HL+ VPDYLL +E K + KN + R+
Sbjct: 525 DLDSLRHDKELHPARVQQHLKRVPDYLLPEAARETGKKIGFVPFHNPKKNRKGKVAKRKP 584
Query: 445 FRKSDPLKSF 454
RKSDPLK+F
Sbjct: 585 GRKSDPLKNF 594
>gi|71002100|ref|XP_755731.1| ATP dependent RNA helicase (Dbp9) [Aspergillus fumigatus Af293]
gi|74675200|sp|Q4X0C2.1|DBP9_ASPFU RecName: Full=ATP-dependent RNA helicase dbp9
gi|66853369|gb|EAL93693.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus fumigatus
Af293]
gi|159129787|gb|EDP54901.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus fumigatus
A1163]
Length = 649
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 179/493 (36%), Positives = 274/493 (55%), Gaps = 59/493 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R LA PD++++TP + L T L ++L LV+DEAD
Sbjct: 162 VRSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGTSALSL----ENLTHLVIDEAD 217
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D+ AL+ IPRG Q LMSAT +S+VD LK L +P IL L D +DE
Sbjct: 218 LVLSYGYDEDINALAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPVILKLE---DKEDE 274
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+L++ K +IF ID +RLKLFLE+FGIKS
Sbjct: 275 --GAGISQFVVRCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLFLEQFGIKSC 332
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--------------------------- 225
+LN+ELP NSR+H+++EFN G++D +IA D+ +
Sbjct: 333 VLNSELPINSRIHVVQEFNKGVYDIIIAADEQEVMGLRTSSKKSKEATDGDDEAKDKMGS 392
Query: 226 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
++++D E +R K+ + ++G+ RGIDF+NV V+NF++P + Y HRI
Sbjct: 393 SEDEDNEPEQSGKSARPEKRRKTSGKAKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRI 452
Query: 286 GRTGRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNA------ 337
GRTGRA G ++S V P + + SF DE+ + I+ L
Sbjct: 453 GRTGRAGKAGMALSFVVPADKFGKHKPTSFPTAKHDESVLAKIVKKQAKLGHEVKPYHFE 512
Query: 338 ---VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD 394
V++ RYR D ++VT++A++E+RA+++R E++ SEKLK HFE NP++L L+HD +
Sbjct: 513 MKQVDAFRYRMTDALRAVTRLAIQEARAREIRQELVKSEKLKRHFEENPEELKQLRHDGE 572
Query: 395 LSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGN----KNSSRRQGPRRK- 444
L HL+ +PDYL+ +K + E V ++ + +R +G RK
Sbjct: 573 LRAARIQPHLKHIPDYLMPSKGRKGISSEDVGFVGFRKSGDNRIRKAREKNRGKGKGRKP 632
Query: 445 --FRKSDPLKSFS 455
RK DPLK+F+
Sbjct: 633 SGVRKVDPLKTFN 645
>gi|119481657|ref|XP_001260857.1| ATP dependent RNA helicase (Dbp9), putative [Neosartorya fischeri
NRRL 181]
gi|134034085|sp|A1DHV3.1|DBP9_NEOFI RecName: Full=ATP-dependent RNA helicase dbp9
gi|119409011|gb|EAW18960.1| ATP dependent RNA helicase (Dbp9), putative [Neosartorya fischeri
NRRL 181]
Length = 619
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 179/493 (36%), Positives = 273/493 (55%), Gaps = 59/493 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R LA PD++++TP + L T L + L LV+DEAD
Sbjct: 132 VRSVNLTQKVSDAVQRTMLADYPDLIVSTPARVIANLGTSALSL----EHLTHLVIDEAD 187
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D+ AL+ IPRG Q LMSAT +S+VD LK L +P IL L D +DE
Sbjct: 188 LVLSYGYDEDINALAKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPVILKLE---DKEDE 244
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+L++ K +IF ID +RLKLFLE+FGIKS
Sbjct: 245 --GAGISQFVVRCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLFLEQFGIKSC 302
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--------------------------- 225
+LN+ELP NSR+H+++EFN G++D +IA D+ +
Sbjct: 303 VLNSELPINSRIHVVQEFNKGVYDIIIAADEQEVMGSRTSSKKSKEATDGDDEAKDKMGS 362
Query: 226 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
++++D E +R K+ + ++G+ RGIDF+NV V+NF++P + Y HRI
Sbjct: 363 SEDEDNEPEQSGKSARPEKRRKTSGKAKDYGISRGIDFQNVACVLNFDLPTTSKSYTHRI 422
Query: 286 GRTGRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQNA------ 337
GRTGRA G ++S V P + + SF DE+ + I+ L
Sbjct: 423 GRTGRAGKAGMALSFVVPADEFGKHKPTSFPTAKHDESVLAKIVKKQAKLGHEVKPYHFE 482
Query: 338 ---VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD 394
V++ RYR D ++VT++A++E+RA+++R E++ SEKLK HFE NP++L L+HD +
Sbjct: 483 MKQVDAFRYRMTDALRAVTRLAIQEARAREIRQELVKSEKLKRHFEENPEELKQLRHDGE 542
Query: 395 LSKKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGN----KNSSRRQGPRRK- 444
L HL+ +PDYL+ +K + E V ++ + +R +G RK
Sbjct: 543 LRAARIQPHLKHIPDYLMPSKGRKGISSEDVGFVGFRKSGDNRIRKAREKNRGKGKGRKP 602
Query: 445 --FRKSDPLKSFS 455
RK DPLK+F+
Sbjct: 603 SGVRKVDPLKTFN 615
>gi|428171692|gb|EKX40607.1| hypothetical protein GUITHDRAFT_46656, partial [Guillardia theta
CCMP2712]
Length = 525
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 170/450 (37%), Positives = 262/450 (58%), Gaps = 21/450 (4%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
ELC + + +T+ + ++ L P ++IATP + + + L + +S +
Sbjct: 94 ELCFFVPSVTLAAITADQSLAAQKSILLTKPHVLIATPSRLDQHVK---LDNVLLRESTE 150
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
++VLDEADLLLS+G+ED++K+++ +P CQC+LMSAT S D +KL+ L+++NP L
Sbjct: 151 MIVLDEADLLLSFGFEDEIKSIAGSLPNICQCMLMSATLSEDTEKLQALVMNNPVTLKAE 210
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
+ +E + QF + CS+RDK L LLKL ++Q K L F N +D + LKLFL
Sbjct: 211 D-----NESAQGRLAQFSLRCSQRDKFLISYVLLKLGILQGKVLFFVNDVDRCYELKLFL 265
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244
E+F I++A+LN+ELPQNSR+ I++ FN G ++Y ++ ++ + +
Sbjct: 266 EQFSIRAAVLNSELPQNSRMSIIQGFNRGFYNYEEEEEEASEDDESEE-------EEVEE 318
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
K K LD ++GV+RG+DFK V V+NFE+P+ Y HR+GRT RA G ++SLVSP+
Sbjct: 319 KTGKRDLD-DYGVMRGVDFKLVDAVVNFELPRTLRAYTHRVGRTARAGQNGTALSLVSPE 377
Query: 305 EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQD 364
E+ E G +I P P Q VE RYRAED + VTK+A++ +R ++
Sbjct: 378 EVGRLE---GLAGKQAERGMQVIEPLPFNLQQ-VEGFRYRAEDSLRRVTKLAIKRARLRE 433
Query: 365 LRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVK 424
+ +E+LNS+ LK HF+ NP+DL L+HD+ L+ +HL VPDYLL + K
Sbjct: 434 IESELLNSKTLKEHFQHNPQDLRALRHDRTLAPNRQMAHLAKVPDYLLPPSLRTQVMQSK 493
Query: 425 LARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
A ++S +RK +DPLK+F
Sbjct: 494 -REAKRRARDSLPVNSKKRKKEGADPLKTF 522
>gi|255933215|ref|XP_002558078.1| Pc12g12670 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582697|emb|CAP80894.1| Pc12g12670 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 613
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 182/493 (36%), Positives = 273/493 (55%), Gaps = 61/493 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + R+ LA PDIV++TP + ++ L D + LV+DEAD
Sbjct: 128 IRSVNLTQKVSDEVQRSMLADFPDIVVSTPTRVYSNVNNSALSL----DKVTHLVIDEAD 183
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++++ ALS IPRG Q LMSAT +S+VD LK L NP IL L E E
Sbjct: 184 LVLSYGYDEEINALSKAIPRGAQTFLMSATLTSEVDTLKDLYCRNPVILKLEE-----KE 238
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF +D +R+KLFLE+FG+KS
Sbjct: 239 EKGAGVSQFVVRCAEDEKFLLTYVIFKLQLIKGKVIIFVADVDRCYRVKLFLEQFGLKSC 298
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ----TKEK------------------- 229
+LN+ELP NSR+H++EEFN G++D ++A D+ + TK K
Sbjct: 299 VLNSELPINSRIHVVEEFNKGVYDIIVAADEQEVMGVTKSKKSREDKEAEAEEEEAKEEM 358
Query: 230 ---------DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAG 280
D+S +G +++K +K + D + + RGIDF+NV V+NF++P ++
Sbjct: 359 GSSEDEEAVDESGKGKKPETKKRRKMTSKEKD--YSIARGIDFQNVACVLNFDLPTSSKS 416
Query: 281 YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF--VGDDENEDSNIIAPFPLLAQ--- 335
Y HRIGRTGRA G ++S V P + + S DE + II L
Sbjct: 417 YTHRIGRTGRAGKAGMALSFVIPTDQHGKHKPTSIPSTKHDETMLAKIIKKQTKLGHEVK 476
Query: 336 ------NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLL 389
+ V++ RYR D +SVT++AV+E+R +++R E++ SEKLK HFE NP++L L
Sbjct: 477 PYHFEMSQVDAFRYRMTDALRSVTRLAVQEARGREIRQELIKSEKLKRHFEENPEELRQL 536
Query: 390 KHDKDLSKKPPASHLRDVPDYLLDAKTQEAC--KMVKLARAAMGNKNSSRRQGPRRKFR- 446
+HD +L +HL+ VPDYL+ AK ++ + V + +N R+ R + R
Sbjct: 537 RHDGELRAARVQAHLKHVPDYLMPAKGRKGLSKENVGFVGFSKSKQNRIRKARDRNRARG 596
Query: 447 ----KSDPLKSFS 455
K DPLK+F+
Sbjct: 597 KSGGKVDPLKTFN 609
>gi|327349068|gb|EGE77925.1| ATP-dependent RNA helicase DBP9 [Ajellomyces dermatitidis ATCC
18188]
Length = 607
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 173/486 (35%), Positives = 268/486 (55%), Gaps = 52/486 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ LT + + R+ LA PDIVI+TP +++ L + + LV+DEAD
Sbjct: 129 IRSTNLTQKVSDAVQRSILADLPDIVISTPARAVVNINSSALTLQHLTH----LVIDEAD 184
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L E D
Sbjct: 185 LVLSYGYEEDMQSLAKAVPRGVQAFLMSATFTSEVDALKGLFCRNPVVLKLEEKEDEG-- 242
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+S
Sbjct: 243 ---AGISQFVVRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIRSC 299
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG--------------HV 238
+LN+ELP NSR+H+++EFN G+ + ++ E++ D G
Sbjct: 300 VLNSELPVNSRIHVVQEFNKGVKPSRKSDQSSKDPEQENDDGSGVKTTNNYLQDSSEDET 359
Query: 239 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 298
+R SK+ K+ + ++G+ RGIDF++V V+NF++P N+ Y HRIGRTGRA TG ++
Sbjct: 360 KARPSKRPKKSAKEKDYGISRGIDFQDVACVLNFDLPTNSKSYTHRIGRTGRAGKTGMAL 419
Query: 299 SLVSPDEMKIFEEIKSFVGDDENED------------SNIIAPFPLLAQNAVESLRYRAE 346
S V P + + SF +E + P+ + V++ RYR
Sbjct: 420 SFVVPSDQFGKHKPTSFSSAKHDEAVLGKIIKRQGKLGREVKPYHFEMKQ-VDAFRYRMS 478
Query: 347 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 406
D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++L L+HD +L +HL+
Sbjct: 479 DALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRQLRHDGELRAARVQAHLKH 538
Query: 407 VPDYLLDAKTQEACKMV----------------KLARAAMGNKNSSRRQGPRRKFRKSDP 450
VPDYL+ K + ++ +A N+ R R +K DP
Sbjct: 539 VPDYLMPTKGKGGLSSGPAGDVGFVGFRKTHENRIRKARERNRGRGRPAKAGRGGKKVDP 598
Query: 451 LKSFSA 456
LKSF++
Sbjct: 599 LKSFNS 604
>gi|449690217|ref|XP_002156431.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Hydra
magnipapillata]
Length = 534
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 181/447 (40%), Positives = 267/447 (59%), Gaps = 26/447 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ VV L +S S ++L DI+I+TP + ++ + K F D L+LDEAD
Sbjct: 106 VSVVDLGNSTVQSS--SSLINNADILISTPSKILAHINNKTINLKDFLD---YLILDEAD 160
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
++ SYGYE DLK ++ +P+ Q LL+SAT S D+ L+ LIL+ P IL L E + E
Sbjct: 161 MMFSYGYEQDLKTITTSLPKIYQALLVSATISEDIKCLEALILNKPVILKLEESHLPEKE 220
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF I C DK L I L KL LVQ K LIF N+ID +RLKLFLE+F I++
Sbjct: 221 ----KLNQFVIKCESSDKYLLIYALFKLNLVQGKTLIFVNSIDRCYRLKLFLEQFYIRTC 276
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
+LN+ELPQ+SR+HI++EFN G++D +IATD+ + S+ + + K K K
Sbjct: 277 VLNSELPQSSRIHIVDEFNRGVYDIVIATDEAVVINTNLSNTNQNKEKTKKNKK-AMKTK 335
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE-----MK 307
++ V RGIDF++V V+NF+ P+ Y+HR+GRT R N G ++S V+ E M
Sbjct: 336 KDYAVARGIDFQDVDNVLNFDFPETGDAYIHRVGRTARGNNHGTALSFVASSEDQKHLMM 395
Query: 308 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 367
+ E++K+ V EN + P+ + +E LRYR DV SVT+I V+++R +++++
Sbjct: 396 VEEKLKTDVIAKENA----LKPYNFKIEE-IEGLRYRVNDVINSVTRIKVKDARFKEIKS 450
Query: 368 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLAR 427
EIL+S KLK +FE NPKDL +L+HDK L H++DVP+YL+ + + MVK R
Sbjct: 451 EILHSNKLKMYFEENPKDLRVLRHDKILKPTDQQPHMKDVPEYLVPSSLRHI--MVKSKR 508
Query: 428 AAMGNKNSSRRQGPRRKFRKSDPLKSF 454
+ S Q + K +K+DPLK+F
Sbjct: 509 ----KRKQSNIQHEKIKKKKTDPLKTF 531
>gi|431909937|gb|ELK13033.1| Putative ATP-dependent RNA helicase DDX56 [Pteropus alecto]
Length = 545
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 243/403 (60%), Gaps = 21/403 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PDIV+ TP + L+ S DSL++LV+DEAD
Sbjct: 113 IRVANVSAAEDSASQRAVLTEKPDIVVGTPS---RILNHLQQDSLRLRDSLELLVMDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P+ +QQF + C+ E DK L + LLKL L++ KAL+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPEQLQQFQVVCAAEEDKFLVLYALLKLALIRGKALLFVNTLERSYRLRLFLEQFSIPA 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN GL+D +IATD G V ++ K K
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGLYDCVIATDAEVL--------GASVKGKRRGKGSKGDR 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P + Y+HR GRT RA N G ++ V P E+
Sbjct: 338 ASDPEAGVARGIDFHHVCAVLNFDLPPSPEAYIHRAGRTARANNPGIVLTFVLPTELPHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ +G D D+ + P+ + +E RYR D +SVTK +RE+R ++++ E+
Sbjct: 398 GKIEELLGGD--SDAPTLLPYQFHMEE-IEGFRYRCRDAMRSVTKQGIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
L+SE+LK +FE NP+DL LL+HD L HL VPDYL+
Sbjct: 455 LHSERLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLV 497
>gi|198434305|ref|XP_002132137.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
[Ciona intestinalis]
Length = 570
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 176/445 (39%), Positives = 255/445 (57%), Gaps = 31/445 (6%)
Query: 27 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 86
L+ LA PDIV+ TP + + G L S ++ LVLDEADLL S+GYEDDLK L
Sbjct: 134 LKPLLAVKPDIVVGTPSRVLAHVRAGNLTLAS----VRWLVLDEADLLFSFGYEDDLKIL 189
Query: 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN--VQQFWIS 144
+P Q LMSAT S DV+ LKKL+L+NP L L E E +P + Q+ +
Sbjct: 190 LKHLPSSYQSFLMSATLSEDVEALKKLVLNNPVTLNLSE------EELPMTDKLTQYHVF 243
Query: 145 C-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
C SE DK L I L KL+LV+ K+L+F NTI+ +RLKLFLE+F I +LN+ELP ++R
Sbjct: 244 CESEDDKYLLIYALNKLKLVRGKSLLFVNTINKCYRLKLFLEQFSIFCCVLNSELPVSTR 303
Query: 204 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 263
H+++++N GL+DY+IATD++ S+ + K K E+GV RGIDF
Sbjct: 304 CHVVQQYNEGLYDYIIATDESAVVASTVSETAPEIKKTGKHKKKKLTKAKEYGVSRGIDF 363
Query: 264 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 323
+NV VINF+ P Y+HR+GRT R +G ++S V +EM++ + ++ + N D
Sbjct: 364 QNVSNVINFDFPPTVGSYIHRVGRTARGDKSGTALSFVVSEEMELLSQAQARLSS--NAD 421
Query: 324 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 383
++ P+ + +E RYR +D ++VTK A+ ++R ++LR E+LNS KLK +FE NP
Sbjct: 422 DQVMKPYQ-FKMDEIEGFRYRCKDAIRAVTKRAIHDARVKELRREMLNSAKLKTYFEENP 480
Query: 384 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 443
DL +L+HD H+++VP+YL+ + V RA+ S PR+
Sbjct: 481 YDLQVLRHDAASRPMKVKKHMKNVPEYLIPPTLKGLYSGVS-TRASQHQPPPSHDMKPRK 539
Query: 444 ------------KFRK--SDPLKSF 454
K++K DPLKSF
Sbjct: 540 RSSVRVMGKPNPKYKKKLEDPLKSF 564
>gi|393221845|gb|EJD07329.1| ATP-dependent RNA helicase dbp9 [Fomitiporia mediterranea MF3/22]
Length = 633
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 197/537 (36%), Positives = 281/537 (52%), Gaps = 104/537 (19%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L+ C+ ++ VV L S R + PDIVI TP + LS +++ S SD
Sbjct: 114 LLAYCEKEIV--VVNLVSGTSTHLQRVLTSEKPDIVIGTPS---RALSALQVKALSLSD- 167
Query: 63 LKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
L+ LV+DEADL+LSYG+++D++ + +P+ Q LMSAT + DV+ LK L+L NP I
Sbjct: 168 LESLVIDEADLVLSYGHDEDIRTVINGGYLPKVYQSFLMSATMTKDVELLKGLVLRNPAI 227
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
L L E DE + Q+ + C+E DK L +LKL+LV+ K +IF N +D +R+
Sbjct: 228 LRLEE-----DEGDAARLSQYVVKCNEVDKFLLTYVILKLKLVKGKTIIFVNDVDRCYRV 282
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD----TQTKEKDQSDEGG 236
KLFLE+F IKS +LN+ELP NSR+HI++EFN G++DY+IATD+ + D++DE
Sbjct: 283 KLFLEQFSIKSCVLNSELPLNSRVHIVQEFNKGVYDYIIATDEGSGSIEPDSDDETDEEV 342
Query: 237 HVD-------------------------SRKSKKHP----------------KAKLDSEF 255
VD + K K+ P + + D E+
Sbjct: 343 QVDGEQLTSTQRDVEPIEPGDPGPSSTKTMKRKRSPSPRPTPEGTTTKKNKSRTQNDKEY 402
Query: 256 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP------------ 303
GVVRG+DF +V V+NF++P +A Y HR+GRT RA TG ++S V P
Sbjct: 403 GVVRGVDFIDVACVLNFDLPTSARAYTHRVGRTARAGRTGMALSFVVPAAEWGKNKVVGC 462
Query: 304 ------DEMKI--FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKI 355
DE++ E ++ G NE VE+ RYR +D +SVT+
Sbjct: 463 LPSARRDEVRFSRIERQQATRGSKINEYK--------FDMKQVEAFRYRMQDALRSVTRT 514
Query: 356 AVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 415
A+RE+R ++L++EILNSEKLKAHFE NP DL+ L+HDK L H++ VP YL+
Sbjct: 515 AIREARVKELKSEILNSEKLKAHFEENPLDLEYLRHDKPLHPTRVQPHMKHVPKYLMPRM 574
Query: 416 TQEACKMVKLARAAMGNKNSS-----------------RRQGP-RRKFRKSDPLKSF 454
A A A G K +S GP + + +KSDPLK F
Sbjct: 575 GTAASAGELTAGAGGGEKEASFVPFRKYTVRGRGRGRGSHTGPGKGRKKKSDPLKKF 631
>gi|242010319|ref|XP_002425916.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212509892|gb|EEB13178.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 544
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 166/414 (40%), Positives = 254/414 (61%), Gaps = 24/414 (5%)
Query: 3 LIEL-CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
IEL K ++ + ++ + S + L PD+VIATP + L+ Q+ + D
Sbjct: 100 FIELTVKCSREVSCLDISQHLELSAQKPLLVEGPDVVIATPS---RALAHLKAQNMTLKD 156
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL++L++DEADL+ S+G+E+DLK + + +P Q +L SAT + DV LK+L L NP IL
Sbjct: 157 SLEMLIVDEADLVFSFGFENDLKQILSYLPDVYQAVLASATLTKDVLNLKELTLQNPVIL 216
Query: 122 TLPEVGDVKDEVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
L E E+ P + + IS E +K + + LLKL L++ K +IF N +D +RL
Sbjct: 217 KLKE-----PELAPTTQLAHYHISAEEEEKAVILYVLLKLSLIRGKTIIFVNHVDKCYRL 271
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
KL+LE+F I S ILN+ELP + R H + ++N G++D +IA+D E D G ++++
Sbjct: 272 KLYLEQFNIPSCILNSELPASMRCHAVTQYNLGVYDLIIASD-----ENIADDPGANLNN 326
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
RK KK D EFGV+RGIDF+ V VINF+ P+ Y+HR+GRT R N G ++S
Sbjct: 327 RKRKK------DKEFGVIRGIDFQFVSNVINFDFPKTVVSYIHRVGRTARGNNEGTALSF 380
Query: 301 VSPDEMKIFEEIKSFVGDDENEDSN--IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 358
V+ E ++FEE+++ + + DSN +I + + VE RYR+ D ++VTKIAVR
Sbjct: 381 VASKERQLFEEVENHLKMSYDIDSNQSVIRAYEFKMEE-VEGFRYRSRDAWRAVTKIAVR 439
Query: 359 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
E+R +++R EILN KLK++F+ NP+DL L+HD+ L HL +VP+Y++
Sbjct: 440 EARLKEIRQEILNDNKLKSYFKDNPRDLQCLRHDRALHTVKQQQHLANVPEYII 493
>gi|167517018|ref|XP_001742850.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779474|gb|EDQ93088.1| predicted protein [Monosiga brevicollis MX1]
Length = 550
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 175/464 (37%), Positives = 270/464 (58%), Gaps = 38/464 (8%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ V L ++ L++ A P I++ TP + + + ++K +LK+++LDEAD
Sbjct: 103 INVGVLATNQSKKQLKSLAASKPPILVGTPTRILQHIQN---EAKEVRQTLKLMILDEAD 159
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL SYGY +DL+ L A++PR Q +LMSAT DV+ LK+L L NP ++ L E D+ DE
Sbjct: 160 LLFSYGYHEDLRRLCALLPRLRQTILMSATMGDDVNALKELALRNPAVIKLEE-SDLPDE 218
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
++Q+ + C ++LL++ LLK +LV+ K LIF N ID +R+KLFL+KFGI+
Sbjct: 219 ---DQLKQYKLYCEPSERLLHLCALLKFQLVRGKTLIFVNDIDSCYRVKLFLDKFGIRCC 275
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
+LN+ELP NSR HI+ +FN G++DY+IA+D+ T +S GG K + P A D
Sbjct: 276 VLNSELPLNSRRHIVSQFNKGVYDYIIASDEGAT---GKSLWGGICKRGKGRAEPSA--D 330
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
E+GV RG+DFK + VINF+ P AA YVHR+GRT R + G ++S + + ++
Sbjct: 331 QEYGVARGVDFKGIKNVINFDFPATAAAYVHRVGRTARGHRAGLALSFYLHADNERVAQV 390
Query: 313 KSFVG---------------DDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAV 357
+ + + E ++A + + ++ +RYR EDV V++ A+
Sbjct: 391 ERLLEVAEAQEQEEAETAKPNSEASAHRLVAYS--IDKRVLDKIRYRVEDVLSMVSRNAI 448
Query: 358 RESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK-PPASHLRDVPDYLLDAKT 416
+++R ++ NEILNSEKL+AHFE NPKDL++L+HD++L ++ HL+ +P Y+ +
Sbjct: 449 KKARRAEIENEILNSEKLQAHFEDNPKDLEVLRHDRNLQQRDQHMHHLKHLPAYIKQGVS 508
Query: 417 QEACKMV---KLARAAMGNKNSSRR---QGPRRKFRKSDPLKSF 454
A + K RA G N RR K RK DPLK+
Sbjct: 509 VPAIQSGANDKNGRA--GGANGKRRPNKNNKSSKRRKDDPLKAL 550
>gi|444315237|ref|XP_004178276.1| hypothetical protein TBLA_0A09740 [Tetrapisispora blattae CBS 6284]
gi|387511315|emb|CCH58757.1| hypothetical protein TBLA_0A09740 [Tetrapisispora blattae CBS 6284]
Length = 617
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 182/505 (36%), Positives = 278/505 (55%), Gaps = 63/505 (12%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
+I C + K + ++ MP S L L+ P+I+++TP + L T + + D+
Sbjct: 122 MILYCSNDI--KALNISKDMPPSVLSTMLSESPEIIVSTPAKLNTLLETN--NNSLYLDN 177
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYI 120
L+ LV+DE DL+L++GY+DDLK ++ +P + Q LMSAT + D+ +LK+ +P I
Sbjct: 178 LQFLVIDEVDLVLTFGYQDDLKNITQYLPLKKNLQTFLMSATLNDDIQELKQQYCRSPAI 237
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
+ + KD+ + Q++++ SE DK L + KL L++ K LIF N ID +RL
Sbjct: 238 IKFNDDQIAKDQ---SKLLQYYVTVSEFDKFLLTYVIFKLNLIKGKTLIFVNNIDRGYRL 294
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--------TKEKDQS 232
KL LE+FGIKS ILN ELP NSR HI+E+FN ++ LIATDDT+ ++ Q+
Sbjct: 295 KLVLEQFGIKSCILNNELPANSRQHIVEQFNKNVYRLLIATDDTEYIKDEEEQDDDEPQN 354
Query: 233 DEG--------------------------GHVDSRK-SKKHPKAKLDSEFGVVRGIDFKN 265
D+ V S+K +K + K K D E+GV RG+DF+N
Sbjct: 355 DKTKVVEESEVVEKESDKESDKDDDNSTQNEVKSKKETKNNLKVKKDKEYGVSRGVDFQN 414
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 325
+ V+NF++P + YVHRIGRT RA +G ++S V P +K F + K+ + D
Sbjct: 415 IACVLNFDLPTTSKSYVHRIGRTARAGKSGTAISFVIP--LKEFGKHKASMCPTTKRDEK 472
Query: 326 I--------------IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I I P+ + +E RYR ED ++VT++AVRE+R ++L+ E+L
Sbjct: 473 ILQRIIKQQNKLGLEIQPYAFDIK-QIEGFRYRMEDGFRAVTQVAVREARIKELKQELLA 531
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
S+KLK HFE NP++L+ L+HDK+L HL+ VPDYLL + +
Sbjct: 532 SDKLKRHFEENPQELNSLRHDKELHPARIQQHLKRVPDYLLPEGAKNGNTNIGFVPFHKN 591
Query: 432 NKNSSRRQG--PRRKFRKSDPLKSF 454
+ + ++G +RK KSDPLK+F
Sbjct: 592 GRRKNFKKGRVNKRKHGKSDPLKNF 616
>gi|154281927|ref|XP_001541776.1| hypothetical protein HCAG_03874 [Ajellomyces capsulatus NAm1]
gi|160380634|sp|A6R2L6.1|DBP9_AJECN RecName: Full=ATP-dependent RNA helicase DBP9
gi|150411955|gb|EDN07343.1| hypothetical protein HCAG_03874 [Ajellomyces capsulatus NAm1]
Length = 625
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 166/447 (37%), Positives = 257/447 (57%), Gaps = 53/447 (11%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ V LT + + R+ LA PDIV++TP +++ L + L LV+DEA
Sbjct: 128 HVRSVNLTQKVSDAVQRSLLADLPDIVVSTPARAVANVNSSALSL----ERLTHLVIDEA 183
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+LSYGYE+D+++L+ +PRG Q LMSAT +S+VD LK L NP +L L E D
Sbjct: 184 DLVLSYGYEEDMQSLAKAVPRGVQTFLMSATFTSEVDTLKGLFCRNPVVLKLEEKEDEG- 242
Query: 132 EVIPKNVQQFWIS-CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ QF + C+E +K L + KL+LV+ K +IF +D +RLKLFLE+FGI+
Sbjct: 243 ----AGISQFVVRRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRCYRLKLFLEQFGIR 298
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------------------------- 225
S +LN+ELP NSR+H+++EFN G++D +IA DD +
Sbjct: 299 SCVLNSELPVNSRIHVVQEFNKGVYDIIIAVDDQEVLGELRKNSKKQPRKSDQCSRDSEY 358
Query: 226 -----TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAG 280
++ DQ +++ SK+ K+ + ++G+ RGIDF+NV V+NF++P +
Sbjct: 359 DGAQTSRNNDQYSSEDDAETQPSKRPKKSAKEKDYGISRGIDFQNVACVLNFDLPTTSKS 418
Query: 281 YVHRIGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIA 328
Y HRIGRTGRA TG ++S V P + K E + S + +++ +
Sbjct: 419 YTHRIGRTGRAGKTGMALSFVIPSDQFGKHKPTSIPSAKHDEAMLSKIIKRQDKLGREVK 478
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
P+ + V++ RYR D ++VT++AV+E+RA+++R E++ SEKLK HFE NP++L
Sbjct: 479 PYHFDMKQ-VDAFRYRMSDALRAVTRVAVQEARAREIRQELVKSEKLKRHFEENPEELRQ 537
Query: 389 LKHDKDLSKKPPASHLRDVPDYLLDAK 415
L+HD +L +HL+ VPDYL+ K
Sbjct: 538 LRHDGELRAARVQAHLKHVPDYLMPTK 564
>gi|51830470|gb|AAU09764.1| YLR276C [Saccharomyces cerevisiae]
Length = 594
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 270/480 (56%), Gaps = 49/480 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ + ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE D
Sbjct: 125 IRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVD 182
Query: 73 LLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
L+L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL
Sbjct: 183 LVLTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------N 236
Query: 131 DEVIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
DE I KN + Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+F
Sbjct: 237 DEEINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQF 296
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKH 246
GIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D E GH + +K
Sbjct: 297 GIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKS 356
Query: 247 PKAKLDS----------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
+ + ++ E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 357 LEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTAR 416
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQN 336
TG ++S V P +K F + K + +D I++ P+ Q
Sbjct: 417 GGKTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYK-FDQK 473
Query: 337 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 396
VE+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 474 QVEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELH 533
Query: 397 KKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 454
HL+ VPDYLL + VK K S ++G + K K DPLK+F
Sbjct: 534 PARVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKVDPLKNF 593
>gi|6323306|ref|NP_013378.1| Dbp9p [Saccharomyces cerevisiae S288c]
gi|2500536|sp|Q06218.1|DBP9_YEAST RecName: Full=ATP-dependent RNA helicase DBP9; AltName: Full=DEAD
box protein 9
gi|160380635|sp|A7A1G0.1|DBP9_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP9; AltName: Full=DEAD
box protein 9
gi|577189|gb|AAB67366.1| Ylr276cp [Saccharomyces cerevisiae]
gi|151940983|gb|EDN59364.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
gi|190405335|gb|EDV08602.1| hypothetical protein SCRG_04227 [Saccharomyces cerevisiae RM11-1a]
gi|207342874|gb|EDZ70505.1| YLR276Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269829|gb|EEU05089.1| Dbp9p [Saccharomyces cerevisiae JAY291]
gi|259148259|emb|CAY81506.1| Dbp9p [Saccharomyces cerevisiae EC1118]
gi|285813693|tpg|DAA09589.1| TPA: Dbp9p [Saccharomyces cerevisiae S288c]
gi|323336336|gb|EGA77604.1| Dbp9p [Saccharomyces cerevisiae Vin13]
gi|392297784|gb|EIW08883.1| Dbp9p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 594
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 270/480 (56%), Gaps = 49/480 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ + ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE D
Sbjct: 125 IRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVD 182
Query: 73 LLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
L+L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL
Sbjct: 183 LVLTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------N 236
Query: 131 DEVIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
DE I KN + Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+F
Sbjct: 237 DEEINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQF 296
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKH 246
GIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D E GH + +K
Sbjct: 297 GIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKS 356
Query: 247 PKAKLDS----------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
+ + ++ E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 357 LEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTAR 416
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQN 336
TG ++S V P +K F + K + +D I++ P+ Q
Sbjct: 417 GGKTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYK-FDQK 473
Query: 337 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 396
VE+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 474 QVEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELH 533
Query: 397 KKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 454
HL+ VPDYLL + VK K S ++G + K K DPLK+F
Sbjct: 534 PARVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKVDPLKNF 593
>gi|323303814|gb|EGA57597.1| Dbp9p [Saccharomyces cerevisiae FostersB]
Length = 594
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 270/480 (56%), Gaps = 49/480 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ + ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE D
Sbjct: 125 IRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVD 182
Query: 73 LLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
L+L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL
Sbjct: 183 LVLTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------N 236
Query: 131 DEVIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
DE I KN + Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+F
Sbjct: 237 DEEINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQF 296
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKH 246
GIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D E GH + +K
Sbjct: 297 GIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKS 356
Query: 247 PKAKLDS----------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
+ + ++ E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 357 LEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTAR 416
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQN 336
TG ++S V P +K F + K + +D I++ P+ Q
Sbjct: 417 GGKTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYK-FDQK 473
Query: 337 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 396
VE+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 474 QVEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELH 533
Query: 397 KKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 454
HL+ VPDYLL + VK K S ++G + K K DPLK+F
Sbjct: 534 PARVQQHLKRVPDYLLPESARGKGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKVDPLKNF 593
>gi|443726609|gb|ELU13728.1| hypothetical protein CAPTEDRAFT_150704 [Capitella teleta]
Length = 549
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 170/455 (37%), Positives = 268/455 (58%), Gaps = 25/455 (5%)
Query: 3 LIELC-KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+ ELC ++ + ++ M + LA PDIV++TP + L G L S +
Sbjct: 102 IAELCLSCSREVSTIDISGQMSLESQKPMLAEKPDIVVSTPSRILLHLQAGTL---SLKE 158
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL+ LV+DEADL+ S+GYE DL+A+ + +PR Q LMSAT S DV LK ++LHN IL
Sbjct: 159 SLEFLVIDEADLVFSFGYESDLQAIKSYLPRIYQAFLMSATLSEDVKSLKSMVLHNAVIL 218
Query: 122 TLPEVGDVKDEVIPKN--VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
L +D +P + + Q+ I C E +K + + ++LKL L++ K L+F NT+D +R
Sbjct: 219 KL------EDSSLPTSAKLSQYHIRCEEDEKYVILYSMLKLRLIRGKTLLFVNTVDKCYR 272
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239
LKLFLE+F I S +LN+ELP NSR HI+ +FN+G +D +IA+D+ + +
Sbjct: 273 LKLFLEQFQIASCVLNSELPVNSRCHIVSQFNSGFYDIIIASDEVALETPSEV------- 325
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
K K D E G+ RGIDF+ V VINF++P +A Y+HR+GRT R N G ++S
Sbjct: 326 --KKTKKKTKGKDKESGISRGIDFQYVSNVINFDLPLDADSYIHRVGRTARGDNEGTALS 383
Query: 300 LVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 359
++ + + EI++ + D + ++ P+ L +E +YRA+D K+VTK+AV+
Sbjct: 384 FIAVKDQERQMEIEAALSDGLPKGEQVLKPY-LFKMKEIEGFQYRAQDALKAVTKVAVKN 442
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEA 419
+R +++ E+LNS+KLK +F+ NP+D +L+HD+ + K HL++VP+YL+ ++
Sbjct: 443 TRMNEIKKELLNSQKLKLYFKDNPRDQQVLRHDRRSTNKVQG-HLQNVPNYLVPPTLRKY 501
Query: 420 CKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
K R + SR P RK + ++PL +F
Sbjct: 502 NLGSKGRRQPKAAASISR--APSRKRQAANPLNTF 534
>gi|448099184|ref|XP_004199083.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
gi|359380505|emb|CCE82746.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
Length = 572
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 174/463 (37%), Positives = 260/463 (56%), Gaps = 29/463 (6%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ V+ L+S++ L + L PDI+I+TP + + L V + ++ L +DE
Sbjct: 117 KVSVLNLSSNISEQVLNSLLINKPDIIISTPAKLLQFLEKNVNSNLINLSKVQSLTIDEV 176
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL++SYGY DDL+ L A +P + Q LMSAT + +V++LK P IL L +
Sbjct: 177 DLIISYGYSDDLQKLGAYLPAKKNLQTYLMSATINDEVNELKSRFCTKPAILKLDD---- 232
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
DE N+ Q++ +E DK L + KL L++ K +IF N ID +RLKLFLE+FGI
Sbjct: 233 -DEATQNNLVQYYAKTTEFDKFLLAYVIFKLNLIKGKTIIFVNNIDRGYRLKLFLEQFGI 291
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK------EKDQSDEGGHVDSRKS 243
+S ILN+ELP NSR+HI+EEFN ++ LIATD+ + DQ + + +KS
Sbjct: 292 RSCILNSELPVNSRIHIVEEFNKNVYKLLIATDENSNNRLEMDVDSDQEQDDSQENDKKS 351
Query: 244 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
K K E+GV RG+DFKNV V+NF++P ++ Y+HRIGRT RA +G ++S V P
Sbjct: 352 TKGNKQNNGREYGVSRGVDFKNVACVLNFDLPTSSKAYIHRIGRTARAGKSGMALSFVIP 411
Query: 304 ------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKS 351
K E+I + ++ I P+ VE RYRAED ++
Sbjct: 412 LKEVGKHKTACLKTAKKDEKILRRIVKQQSRSGFDIKPYQ-FDMKQVEGFRYRAEDAFRA 470
Query: 352 VTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 411
VT ++++E+R ++L+ EIL S+KLK FE NP+DL L+HDK+L +HL+ VP+YL
Sbjct: 471 VTSVSIKEARYKELKEEILTSDKLKRFFEENPQDLSALRHDKELHPAKVQAHLKRVPEYL 530
Query: 412 LDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
L ++A + +K R + + +K DPLKS
Sbjct: 531 LPESARDAPSKIGFVPF---HKTKGRPRKRKAASKKVDPLKSL 570
>gi|349579984|dbj|GAA25145.1| K7_Dbp9p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 594
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 266/480 (55%), Gaps = 49/480 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ + ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE D
Sbjct: 125 IRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVD 182
Query: 73 LLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
L+L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL
Sbjct: 183 LVLTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------N 236
Query: 131 DEVIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
DE I KN + Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+F
Sbjct: 237 DEEINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQF 296
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-----------------TKEKD 230
GIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ +EK
Sbjct: 297 GIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTEDQEEKS 356
Query: 231 QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
E + KK + K D E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 357 LEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTAR 416
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQN 336
TG ++S V P +K F + K + +D I++ P+ Q
Sbjct: 417 GGKTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYK-FDQK 473
Query: 337 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 396
VE+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 474 QVEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELH 533
Query: 397 KKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 454
HL+ VPDYLL + VK K S ++G + K K DPLK+F
Sbjct: 534 PARVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKVDPLKNF 593
>gi|365759353|gb|EHN01145.1| Dbp9p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401837470|gb|EJT41395.1| DBP9-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 593
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 187/491 (38%), Positives = 268/491 (54%), Gaps = 54/491 (10%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L+ C V + + ++S + S L L P+I++ TPG + L T + S S ++
Sbjct: 117 LVLYCSKDV--RTLNISSDISDSVLNTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE- 172
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYI 120
+K LV+DE DL+L++GY+DDL + +P + Q LMSAT + D+ LK+ +P I
Sbjct: 173 IKFLVIDEVDLVLTFGYQDDLHKIGEYLPLKKNLQTFLMSATLNDDIQVLKQKFCRSPAI 232
Query: 121 LTLPEVGDVKDEVIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
L DE I KN + Q+++ SE DK L + KL L++ K LIF N ID
Sbjct: 233 LKF------NDEEINKNQNKLLQYYVKVSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRG 286
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD---- 233
+RLKL +E+FGIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ +++ D
Sbjct: 287 YRLKLVMEQFGIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDTEYIKEEDGDIEEH 346
Query: 234 --------------EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAA 279
E G S++ K + K D E+GV RG+DF NV V+NF++P A
Sbjct: 347 NGGNEEERNLEAESENGEKPSKEKK--VQVKKDKEYGVSRGVDFINVACVLNFDLPTTAK 404
Query: 280 GYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA----------- 328
YVHR+GRT R TG ++S V P +K F + K + D I++
Sbjct: 405 SYVHRVGRTARGGKTGTAISFVVP--LKEFGKHKQSMLQTAKRDEKILSRIIKQQSKLGL 462
Query: 329 ---PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
P+ Q VE RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+
Sbjct: 463 ELQPYK-FDQKQVEGFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKE 521
Query: 386 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRR 443
L L+HDK+L HL+ VPDYLL + VK K R+G +
Sbjct: 522 LQSLRHDKELHPARVQQHLKRVPDYLLPESARGNGTKVKFIPFYNPKKRHPHRKGKVSKP 581
Query: 444 KFRKSDPLKSF 454
K K DPLK+F
Sbjct: 582 KNGKVDPLKNF 592
>gi|226286779|gb|EEH42292.1| ATP-dependent RNA helicase DBP9 [Paracoccidioides brasiliensis
Pb18]
Length = 627
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 176/466 (37%), Positives = 258/466 (55%), Gaps = 68/466 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ LT + + R+ LA PD+VI+TPG +++ L + L LV+DEAD
Sbjct: 106 IRSANLTQKVSDAVQRSILADLPDVVISTPGRAVVNINSSALSL----ERLAHLVIDEAD 161
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYE D++ L+ +PRG Q LMSAT SS+VD LK L NP IL L E D
Sbjct: 162 LVLSYGYEQDMQNLAKAVPRGVQTFLMSATFSSEVDTLKGLFCRNPVILKLEEKDDEGAG 221
Query: 133 VIPKNVQ--QFW-------------ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
+ V+ +W I C+E +K L + KL+LV+ K +IF +D
Sbjct: 222 ISQFVVRYGAYWRGLPFQTHFTNRIIRCAEDEKFLLTYVIFKLQLVKGKCIIFVGDVDRC 281
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT---------KE 228
+RLKLFLE+FGI+S +LN+ELP NSR+H+++EFN G++D +IA DD + K
Sbjct: 282 YRLKLFLEQFGIRSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGELPKKSKKP 341
Query: 229 KDQSDE----GGHVDSRK-----------------------SKKHPKAKLDSEFGVVRGI 261
+SDE G DS + SK++ K+ + ++G+ RGI
Sbjct: 342 NRKSDEAARGAGQEDSEENPDTKTSKDGAQDSSDEEVQEHPSKRYKKSVKEKDYGISRGI 401
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------------KIF 309
DF++V V+NF++P A Y HRIGRTGRA TG ++S V P K
Sbjct: 402 DFQDVACVLNFDLPTTAKSYTHRIGRTGRAGKTGMALSFVVPSNQFGKHKPTSFPSAKRD 461
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
E + + + + + + P+ + VE+ RYR D ++VT+IAV+E+RA+++R E+
Sbjct: 462 EAVLAKITKRQAKAGQEVKPYHFEMKQ-VEAFRYRMSDALRAVTRIAVQEARAREIRQEL 520
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAK 415
L SEKLK HFE NP++L L+HD +L +HL+ VPDYL+ K
Sbjct: 521 LKSEKLKRHFEENPEELRQLRHDGELRAARVQAHLKHVPDYLMPTK 566
>gi|389629680|ref|XP_003712493.1| ATP-dependent RNA helicase DBP9 [Magnaporthe oryzae 70-15]
gi|152013498|sp|A4QTR1.1|DBP9_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP9
gi|351644825|gb|EHA52686.1| ATP-dependent RNA helicase DBP9 [Magnaporthe oryzae 70-15]
gi|440475945|gb|ELQ44591.1| ATP-dependent RNA helicase dbp9 [Magnaporthe oryzae Y34]
gi|440487798|gb|ELQ67573.1| ATP-dependent RNA helicase dbp9 [Magnaporthe oryzae P131]
Length = 636
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 190/507 (37%), Positives = 277/507 (54%), Gaps = 72/507 (14%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAAL-AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
C +VQ VV LT + + R+ L + PDIV++TP + + +G L D L
Sbjct: 143 FCAKEVQ--VVGLTDKVSDAVQRSLLQSSSPDIVVSTPSTAWRNVDSGALSL----DKLT 196
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
LVLDEADL+LSYGY++DL+ ++ +P+G Q ++ SAT + ++D LK + L +P +L L
Sbjct: 197 HLVLDEADLVLSYGYDEDLEKVARGLPKGVQTVMTSATLTDEIDTLKGIFLRDPVLLDLE 256
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
E E+ Q+ + C E +K L L KL+L++ K +IF +D +RLKLF
Sbjct: 257 EPDAEGSEIT-----QYIVKCGEDEKFLLAYILFKLQLIKGKVIIFVADVDRCYRLKLFF 311
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT------------------ 226
E+FGI+S ILN+ELP NSR+ ++EEFN ++D +IA+D+ +
Sbjct: 312 EQFGIRSCILNSELPVNSRISVVEEFNRNVYDIIIASDENEMMGDEDRPAPNGDGKEEAE 371
Query: 227 --KEKDQSDEGGHVDSRKSKKHP--------KAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
K+ + DEG D SK P K D ++GV RGIDFKNV V+NF++P
Sbjct: 372 VDKKHENEDEGQ--DGEASKAAPRPKKKRKMDRKRDKQYGVSRGIDFKNVAVVVNFDLPL 429
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI---------- 326
++ Y HRIGRTGRA G +S P E+ + I + + EN++ +
Sbjct: 430 SSTSYTHRIGRTGRAGQAGMVLSFYVPKEL-FRKHIPTSIDSAENDEKVLARVIKQQKKL 488
Query: 327 ---IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 383
I P+ ++ VES RYR D ++VTKIAVRE+R ++LR E+L SEKLK HFE NP
Sbjct: 489 GREIKPYN-FDRDQVESFRYRMNDALRAVTKIAVREARTRELRQELLKSEKLKRHFEENP 547
Query: 384 KDLD-LLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQ--- 439
+L L++HD +L LR VPDYLL + ++ ++ + + SS RQ
Sbjct: 548 AELQHLVRHDGELRTARANPELRHVPDYLLPKEGRKGLSAAEIGFVPL--RKSSDRQKKG 605
Query: 440 -----GPRRKF----RKSDPLKSFSAE 457
G R F RK DPLK+F A+
Sbjct: 606 RFFKKGGARSFKAGGRKPDPLKTFKAK 632
>gi|448103033|ref|XP_004199934.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
gi|359381356|emb|CCE81815.1| Piso0_002489 [Millerozyma farinosa CBS 7064]
Length = 572
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 174/463 (37%), Positives = 257/463 (55%), Gaps = 29/463 (6%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ V+ L+S++ L + L PDIVI+TP + + L V + ++ L +DE
Sbjct: 117 KVSVLNLSSNISEQVLNSLLINKPDIVISTPAKLLQFLEKNVNSNLINLSKVQSLTIDEV 176
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL++SYGY DDL+ L A +P + Q LMSAT + +V++LK P IL L +
Sbjct: 177 DLVISYGYSDDLQKLGAYLPAKKNLQTYLMSATINDEVNELKSRFCTKPAILKLDD---- 232
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
DE N+ Q++ +E DK L + KL L++ K +IF N ID +RLKLFLE+FGI
Sbjct: 233 -DEATQNNLVQYYAKTTEFDKFLLAYVIFKLNLIKGKTIIFVNNIDRGYRLKLFLEQFGI 291
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK------EKDQSDEGGHVDSRKS 243
+S ILN+ELP NSR+HI+EEFN ++ LIATD+ + DQ + + +KS
Sbjct: 292 RSCILNSELPVNSRIHIVEEFNKNVYKLLIATDENSNNRSEMDVDSDQEQDEAQENDKKS 351
Query: 244 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
K K E+GV RG+DFKNV V+NF++P ++ Y+HRIGRT RA +G ++S V P
Sbjct: 352 TKSNKQNNGKEYGVSRGVDFKNVACVLNFDLPTSSKAYIHRIGRTARAGKSGMALSFVIP 411
Query: 304 ------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKS 351
K E+I + ++ I P+ VE RYRAED ++
Sbjct: 412 LKEVGKHKTACLKTAKKDEKILRRIVKQQSRSGFDIKPYQ-FDMKQVEGFRYRAEDAFRA 470
Query: 352 VTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 411
VT ++++E+R ++L+ EIL S+KLK FE NP+DL L+HDK+L +HL+ VP+YL
Sbjct: 471 VTSVSIKEARYKELKEEILTSDKLKRFFEENPQDLSALRHDKELHPAKVQAHLKRVPEYL 530
Query: 412 LDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
L + A + +R+ +K DPLKS
Sbjct: 531 LPESARNAPSKIGFIPFHKTKGKPRKRKASSKKV---DPLKSL 570
>gi|254582140|ref|XP_002497055.1| ZYRO0D14388p [Zygosaccharomyces rouxii]
gi|238939947|emb|CAR28122.1| ZYRO0D14388p [Zygosaccharomyces rouxii]
Length = 583
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 183/466 (39%), Positives = 272/466 (58%), Gaps = 34/466 (7%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
++ + ++S + S L L P+I++ATPG + L T +++ S D LK LV+DE
Sbjct: 127 IRSLNVSSDISNSVLNTLLLEKPEIIVATPGKLVTLLETN---TEAISLDELKFLVIDEV 183
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+L++GYE+DL ++ +P + Q LMSAT + D+ LK+ P IL +
Sbjct: 184 DLVLTFGYEEDLTKIAQYLPLKKNLQTFLMSATLNDDIQNLKQQFCRFPAILKFNDDEIS 243
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+D+ K + Q+++ +E DK L + KL L++ K L+F N ID ++LKL LE+FGI
Sbjct: 244 RDQ---KKLAQYYVKTTEFDKFLLCYVIFKLALIRGKTLVFVNNIDRGYKLKLVLEQFGI 300
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-------QTKEKDQSDEGGHVDSRK 242
KS+ILN+ELP NSR HI+++FN LF LIATDDT + ++ + G+ +S+
Sbjct: 301 KSSILNSELPINSRQHIVDQFNKNLFHILIATDDTDYIKEEEEELAHEEGRDDGNTESQN 360
Query: 243 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 302
KH K + E+GV RG+DFKNV V+NF++P A YVHR+GRT RA +G ++S V
Sbjct: 361 KSKHGSKK-NREYGVSRGVDFKNVSCVLNFDLPTTAKSYVHRVGRTARAGKSGTAISFVV 419
Query: 303 P--DEMKIFEEIKSFVGDDENEDSNIIA----------PFPLLAQNAVESLRYRAEDVAK 350
P + K + + DE S II P+ + VE RYR ED +
Sbjct: 420 PRKEYGKHKPSMCTTAIKDEKILSRIIKQQSKLGLEMLPYS-FDKKQVEGFRYRMEDGFR 478
Query: 351 SVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDY 410
+VT++AVRE+R ++L+ E+L S+KLK HFE NP++L L+HDK+L HL+ VPDY
Sbjct: 479 AVTQVAVREARIKELKQELLMSDKLKRHFEENPQELQSLRHDKELHPARVQQHLKRVPDY 538
Query: 411 LLDAKTQEACKMVKLARAAMGNKNSSRR--QGPRRKFRKSDPLKSF 454
LL +E K ++ +KN +R +G +K K DPLKSF
Sbjct: 539 LLPEPLREG-KSPQIGFVPF-HKNGKKRAKKGKVQKRGKVDPLKSF 582
>gi|302884336|ref|XP_003041064.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256721960|gb|EEU35351.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 607
Score = 297 bits (761), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 181/476 (38%), Positives = 268/476 (56%), Gaps = 46/476 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ V+LT + + RA L+ PDIVI+TP +++ L D L LVLDEAD
Sbjct: 141 ISTVKLTDKVSNAVQRALLSNSPDIVISTPATAWHNVNSSALSL----DKLTHLVLDEAD 196
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY +DL+ LS +P+G Q ++MSAT + +VD LK + +P +L L E E
Sbjct: 197 LVLSYGYSEDLENLSRSVPKGVQVMMMSATLTDEVDTLKGIFRRDPTLLDLKE-----KE 251
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ + QF C E +K L + KL L++ K +IF + ID +RLKLF E+FGI+S
Sbjct: 252 AEGEGITQFVAKCGEDEKFLLAYVIFKLRLIKGKCIIFVSDIDRCYRLKLFFEQFGIRSC 311
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKD-------------QSDEGGHVD 239
ILN+ELP NSR+H++EEFN ++D +IA D+ D + D+ V+
Sbjct: 312 ILNSELPLNSRVHVVEEFNRNVYDIIIAADEKNDMLGDDEVAEGEEAKEKAEGDDDAEVE 371
Query: 240 S-RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 298
+ R KK K+K D E+GV RG+DFK V VINF++P A+ Y HRIGRT RA TG ++
Sbjct: 372 AKRPKKKAKKSKGDKEYGVSRGVDFKKVSAVINFDLPTTASSYTHRIGRTARAGQTGMAL 431
Query: 299 SLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAE 346
S V P E+ + E++ + + + + + P+ + V+ RYR
Sbjct: 432 SFVVPKELYRKHVPTSTPTAEKDEKVMAKIIRQQAKRGKEVKPYNFNMEQ-VDPFRYRMN 490
Query: 347 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRD 406
D ++VTK+A+RE+R ++LR E+L SEKLK +FE NP +L L+HD +L +HL+
Sbjct: 491 DALRAVTKVAIREARTRELRQELLKSEKLKRYFEENPTELTHLRHDGELRTARQQAHLKH 550
Query: 407 VPDYLLDAKTQEACK------MVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 456
VP+YLL ++A ++ R G K + G R++ DPLK+F A
Sbjct: 551 VPEYLLPKDGKQALTKDIGFVAMRKDRKVKGKKGRGFKVGSRKR----DPLKTFKA 602
>gi|340519870|gb|EGR50107.1| predicted protein [Trichoderma reesei QM6a]
Length = 633
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 187/485 (38%), Positives = 271/485 (55%), Gaps = 58/485 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
++ V+LT + + R+ L+ PDIVI+TP + S + S D L LVLDEA
Sbjct: 161 VRAVKLTDKLTDAVQRSLLSTCPDIVISTPA---RAWHNVNGNSGALSLDKLAYLVLDEA 217
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN--PYILTLPEVGDV 129
DLLLSYGY +DL++LS +P+G Q ++MSAT +++VD LKK+ + P +L L E D
Sbjct: 218 DLLLSYGYSEDLESLSFSLPKGIQTIMMSATLTTEVDSLKKIFYRDQQPTLLDLEE-PDA 276
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+ E V Q C E +K L I + KL+LV+ K +IF ID +RLKL+ E+FGI
Sbjct: 277 EGE----GVTQLVTKCGEDEKFLLIYVIFKLQLVKGKCIIFVADIDRCYRLKLYFEQFGI 332
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT---------------KEKDQSDE 234
+S ILN+ELP NSR+H++EEFN +D +IA+D+ + + + E
Sbjct: 333 RSCILNSELPVNSRIHVVEEFNRNAYDIIIASDEKEVLGNEEKAEEEQEDEAMDDGEVKE 392
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
GG ++ D E+GV RGIDFKNV VINF++P +A+ Y HRIGRT RA
Sbjct: 393 GGRPKKKRKAAKG----DVEYGVSRGIDFKNVAAVINFDLPTSASSYTHRIGRTARAGRA 448
Query: 295 GASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVES 340
G ++S V P ++ + I + EN D I+A P+ + VE+
Sbjct: 449 GMALSFVVPKDL-YRKHIHTSTPSAEN-DEKILARITKQQAKKGKELKPYN-FNKEQVEA 505
Query: 341 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPP 400
RYR D ++VTK+A+RE+R ++LR E+L SEKLK +FE NP +++ L+HD +L
Sbjct: 506 FRYRMNDALRAVTKVAIREARTRELRQELLKSEKLKRYFEENPSEMNHLRHDGELRTARQ 565
Query: 401 ASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR---------QGPRRKFRKSDPL 451
+HL+ VPDYLL + ++A + M K RR + + RK DPL
Sbjct: 566 QAHLKHVPDYLLPKEGRQALTAGDVGFVPM--KRFDRRAGTKRKGGKKSGKAGVRKGDPL 623
Query: 452 KSFSA 456
K+F A
Sbjct: 624 KTFKA 628
>gi|323347358|gb|EGA81630.1| Dbp9p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764102|gb|EHN05627.1| Dbp9p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 594
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 186/480 (38%), Positives = 269/480 (56%), Gaps = 49/480 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ + ++S M S L L P+I++ TPG + L T + S S ++ LK LV+DE D
Sbjct: 125 IRTLNISSDMSDSVLSTLLMDQPEIIVGTPGKLLDLLQTKI-NSISLNE-LKFLVVDEVD 182
Query: 73 LLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
L+L++GY+DDL + +P + Q LMSAT + D+ LK+ +P IL
Sbjct: 183 LVLTFGYQDDLNKIGEYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKF------N 236
Query: 131 DEVIPKN---VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
DE I KN + Q+++ SE DK L + KL L++ K LIF N ID +RLKL +E+F
Sbjct: 237 DEEINKNQNKLLQYYVKVSEFDKFLLCYVIFKLNLIKGKTLIFVNNIDRGYRLKLVMEQF 296
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKKH 246
GIKS ILN+ELP NSR HI+++FN ++ LIATDD + KE+D E GH + +K
Sbjct: 297 GIKSCILNSELPVNSRQHIVDQFNKNVYQLLIATDDXEYIKEEDDEIEEGHNTENQEEKS 356
Query: 247 PKAKLDS----------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
+ + ++ E+GV RG+DFKNV V+NF++P A YVHR+GRT R
Sbjct: 357 LEGEPENDKKPSKKKKVQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTAR 416
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQN 336
TG ++S V P +K F + K + +D I++ P+ Q
Sbjct: 417 GGKTGTAISFVVP--LKEFGKHKPSMLQTAKKDERILSRIIKQQSKLGLELQPYK-FDQK 473
Query: 337 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 396
VE+ RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 474 QVEAFRYRMEDGFRAVTQVAIREARVKELKQELLASEKLKRHFEENPKELQSLRHDKELH 533
Query: 397 KKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 454
HL+ VPDYLL + VK K S ++G + K K DPLK+F
Sbjct: 534 PARVQQHLKRVPDYLLPESARGNGTKVKFVPFHNAKKRHSHKKGRVSKPKNGKVDPLKNF 593
>gi|402083785|gb|EJT78803.1| ATP-dependent RNA helicase DBP9 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 616
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 182/498 (36%), Positives = 270/498 (54%), Gaps = 60/498 (12%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAAL-AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
C +Q VV LT + AS R+ L + PD++++TP + + L D L
Sbjct: 129 FCAKDIQ--VVGLTDKLSASVQRSLLLSNSPDVIVSTPSTAWHNIESSALAL----DKLT 182
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
LVLDEADL+LSYGY DDL+ ++ +P+G Q ++ SAT + ++D LK L L + +L L
Sbjct: 183 HLVLDEADLVLSYGYSDDLEKVAQALPKGVQTVMTSATLTDEIDSLKGLFLRDSVMLDLE 242
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
E + Q+ + C E +K L + KL+L++ K +IF +D +RLKLF
Sbjct: 243 E-----PDAEGSGATQYVVKCGEDEKFLLAYIMFKLKLIKGKVIIFVGDVDRCYRLKLFF 297
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT------------KEKDQS 232
E+FGI+S ILN+ELP NSR+ ++EEFN ++D +IA+D+ + E +
Sbjct: 298 EQFGIRSCILNSELPVNSRISVVEEFNRNVYDIIIASDENEILGDEDVGEGSNKVEAESG 357
Query: 233 DEGGHVD--------SR-KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVH 283
D+ G D SR K K+ K D ++GV RGIDFKNV V+NF++P A Y H
Sbjct: 358 DKAGDADEGDSKPKGSRPKKKRRTGPKRDKQYGVSRGIDFKNVAVVVNFDLPLTATSYTH 417
Query: 284 RIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------P 329
RIGRT RA TG +S P E+ F + D +D ++A P
Sbjct: 418 RIGRTARAGQTGMVLSFYVPKEL--FRKHIPTSIDSAEKDEKVLARIVKQQAKLGRELKP 475
Query: 330 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD-L 388
+ ++ VE RYR D ++VTK+AVRE+R ++LR E+L SEKLK HFE NP +L L
Sbjct: 476 YH-FDRDQVEGFRYRMNDALRAVTKVAVREARTRELRQELLKSEKLKRHFEENPAELQHL 534
Query: 389 LKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA----RAAMGNKNSSRR-----Q 439
+HD +L LR VPDYLL + ++A ++ R + +K+ + +
Sbjct: 535 ARHDSELRTARANPELRHVPDYLLPKEGRKALSATEIGFVPLRKSASDKDRRTKYFRKGR 594
Query: 440 GPRRKFRKSDPLKSFSAE 457
G + RK+DPL++F A+
Sbjct: 595 GGKVGVRKADPLRTFKAK 612
>gi|359497578|ref|XP_003635571.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 16-like, partial
[Vitis vinifera]
Length = 301
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 154/186 (82%), Positives = 171/186 (91%), Gaps = 2/186 (1%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
++LIELC+GQ LKVVQLTSSM SDLR ALAGPPDI+++TPGC+PKCLS GVLQ+ S
Sbjct: 118 LSLIELCRGQ--LKVVQLTSSMSPSDLRVALAGPPDILVSTPGCIPKCLSAGVLQAASII 175
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
+SL+ILVLDEADLLLSYGYEDDLKAL+A +PR CQCLLMSATSS+DV+KLKKLILHNP+I
Sbjct: 176 ESLEILVLDEADLLLSYGYEDDLKALTAHVPRRCQCLLMSATSSADVEKLKKLILHNPFI 235
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
LTLPEVGD KDE+IPKNVQQFWISCS RDKLLYIL LLKLELVQKK LIFTN+IDMAFRL
Sbjct: 236 LTLPEVGDGKDEIIPKNVQQFWISCSARDKLLYILALLKLELVQKKILIFTNSIDMAFRL 295
Query: 181 KLFLEK 186
KLFLEK
Sbjct: 296 KLFLEK 301
>gi|126136425|ref|XP_001384736.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9)
[Scheffersomyces stipitis CBS 6054]
gi|146286107|sp|A3LV40.1|DBP9_PICST RecName: Full=ATP-dependent RNA helicase DBP9
gi|126091958|gb|ABN66707.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9)
[Scheffersomyces stipitis CBS 6054]
Length = 581
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 176/472 (37%), Positives = 271/472 (57%), Gaps = 31/472 (6%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 65
L ++ + L++++ + + L P+I+I+TP + + L + +++
Sbjct: 114 LVYSNNRINAINLSANLSDQVVNSLLMNKPEIIISTPAKLIQVLEKNANKDLIDLSTVRN 173
Query: 66 LVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
L +DE DL+LSYGY +DL+ L +P + Q LMSAT + D++ LK P IL L
Sbjct: 174 LTIDEVDLVLSYGYLEDLQKLETYLPIKKNLQTFLMSATVNDDLNDLKTRFCSRPAILKL 233
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
+ ++++I Q++ +E DK L + KL L++ K L+F N ID +RLKLF
Sbjct: 234 NDEESAQNKLI-----QYYARTTEFDKFLLAYVIFKLNLIKGKTLVFVNNIDRGYRLKLF 288
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--TKEKDQSDEGGHVDSR 241
LE+FGI+ ILN+ELP NSRLHI+EE+N +++ LIATD+T T EKD+ + D +
Sbjct: 289 LEQFGIRCCILNSELPINSRLHIVEEYNKNVYNLLIATDETNDFTVEKDEQQQEESQDKK 348
Query: 242 -------KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
+SKK K K D+E+GV RG+DF+NV V+NF++P + Y+HRIGRT RA
Sbjct: 349 ASSAKTKQSKKSKKQKKDTEYGVSRGVDFRNVACVLNFDLPTTSKAYIHRIGRTARAGKA 408
Query: 295 GASVSLVSP------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLR 342
G ++S V P K E+I + ++++ I P+ VE R
Sbjct: 409 GMALSFVLPIKEVGKHKTASLSTAKKDEKILRRIVKQQSKNGFEIKPYQ-FDMKQVEGFR 467
Query: 343 YRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPAS 402
YR+ED ++VT+ A+RE+R ++L+NE++NS+KLK FE NP+DL L+HDK+L S
Sbjct: 468 YRSEDAFRAVTQTAIREARIKELKNELINSDKLKRFFEENPQDLASLRHDKELHPTRVQS 527
Query: 403 HLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
HL+ VPDYLL ++ K + + +R++ P RK+DPLKSF
Sbjct: 528 HLKRVPDYLLPESARQDPKKIGFVPFHKNKVHKNRKKKPTG--RKADPLKSF 577
>gi|452985016|gb|EME84773.1| hypothetical protein MYCFIDRAFT_207390 [Pseudocercospora fijiensis
CIRAD86]
Length = 658
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 183/496 (36%), Positives = 278/496 (56%), Gaps = 61/496 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+++ +T + A+ RA L+ PDIVIATPG + + VL+ ++LK L++DEAD
Sbjct: 166 IRIENITRNEDANVTRARLSEQPDIVIATPGRANQYYNQEVLKL----NALKHLIIDEAD 221
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+L Y DD++A++ +P G Q +++SA+ S +DKL L P PE+ D+K E
Sbjct: 222 LILGYEENDDVQAIAGALPAGVQKMMVSASLSDQLDKLSLLFF--PEGSQQPEILDLKSE 279
Query: 133 VIPK--NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ + Q+ + +E +K L + + KL+L++ K +IF ID +R+KLFLE+FGI+
Sbjct: 280 EAKEKPTLAQYTVKTAEDEKFLLLYAIFKLQLIKGKFIIFVADIDRCYRVKLFLEQFGIR 339
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT------KEKD-------------- 230
S +LN+ELP NSRLH+++EFN G+++ +IA D+ + K K
Sbjct: 340 SCVLNSELPVNSRLHVVQEFNRGVYNTIIAADEAEVIGNEGGKRKKRREAEQEDEEVEQE 399
Query: 231 ------QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHR 284
+ + G SR +KK K++ D E+GV RGIDF+NV V+NF++PQ+ Y HR
Sbjct: 400 AEAQDAEKENGDSSTSRPAKKQRKSRNDREYGVSRGIDFQNVTCVLNFDLPQSNKSYTHR 459
Query: 285 IGRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPL 332
IGRT RA TG ++S P E+ + EE+ + + + E + +
Sbjct: 460 IGRTARAGQTGMALSFWVPKELYRKHKPTSIAQCEKDEEVITKIVKKQAEKGAEVKEWG- 518
Query: 333 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHD 392
L +E RYR D ++VT+IAVRE+R Q+LRNE++ SEKLK HFE NP+DL L+HD
Sbjct: 519 LDWAKLEGFRYRLADALRAVTRIAVREARTQELRNELIKSEKLKRHFEENPEDLKHLRHD 578
Query: 393 KDLSKKPPASHLRDVPDYLLDAKTQEAC------------KMVKLARAAMGNKNSSRRQG 440
+ HL+ VPDYLL ++A K K+ +A NK +R +G
Sbjct: 579 TETHAVRSQPHLKHVPDYLLPQGGKQAVAKDVGYVGIRKDKENKIRKARAFNK--ARGKG 636
Query: 441 PRRKFRKSDPLKSFSA 456
K + DPLKSF+A
Sbjct: 637 RLAKGKGLDPLKSFNA 652
>gi|170043535|ref|XP_001849439.1| ATP-dependent RNA helicase DBP9 [Culex quinquefasciatus]
gi|167866845|gb|EDS30228.1| ATP-dependent RNA helicase DBP9 [Culex quinquefasciatus]
Length = 551
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 247/401 (61%), Gaps = 11/401 (2%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V L++ + + L+ LA PD+V++TP + L G L K DSLK L++DEAD
Sbjct: 114 VRCVDLSAKVDKAALKHMLAERPDVVVSTPAKLLAQLQEGTLNVK---DSLKTLIVDEAD 170
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+ S+G+E DLKA+ +P Q +L SAT DV +LKK+ILHNP IL L E E
Sbjct: 171 LMFSFGFESDLKAVLDFMPSVHQSVLASATLEKDVLELKKIILHNPVILKLEE-----PE 225
Query: 133 VIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ P + + F I E DK + TL+KL+LV+ K++IF ++ID ++LKLFLE+F I+S
Sbjct: 226 IAPASQLAHFHILAEEVDKAAVLYTLVKLQLVKGKSIIFVDSIDRCYKLKLFLEQFSIRS 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN+ELP R H + +FN GL+D ++A+D+ + ++ G + K+ K K
Sbjct: 286 CVLNSELPAKIRCHTVSQFNQGLYDIIVASDELHVLDPAVKEKKGQNKKKMLKQIAKQK- 344
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
+SE GV RGIDF+ V VINF+ P++ Y+HR GRT R NTG+ +S VS E + +
Sbjct: 345 ESEAGVARGIDFQFVSNVINFDFPKDINSYIHRAGRTARGNNTGSVLSFVSVAEKDMMDS 404
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
++ + + ++ + + VE RYRA D ++VTKI++RE+R ++++ E+ N
Sbjct: 405 VEDHLKSGYEQSETVMKSYQFKMEE-VEPFRYRARDAWRAVTKISIREARIKEIKTEMFN 463
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
SEKLK+ FE NP+DL L+HD+ L HL DVP+Y++
Sbjct: 464 SEKLKSFFEENPRDLQALRHDRTLHTVKIQEHLGDVPEYIV 504
>gi|354543099|emb|CCE39817.1| hypothetical protein CPAR2_602350 [Candida parapsilosis]
Length = 573
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 183/466 (39%), Positives = 275/466 (59%), Gaps = 34/466 (7%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLD 69
++ ++ L+SS L + LA P+I+I+TP + + L + KS D S++ L +D
Sbjct: 117 KIGILNLSSSYSDQVLNSLLANKPEIIISTPNKLIQVLEMND-EKKSPIDLSSVRNLTID 175
Query: 70 EADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 127
E DL+LS+GY +DL L + +P + Q LMSAT + D+++LK P IL L +
Sbjct: 176 EVDLILSFGYLEDLAKLESYLPVKKNLQTFLMSATINDDINELKTKFCTRPAILKLDDEQ 235
Query: 128 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
D+++ QF+ +E DK L + KL L++ K ++F N ID +RLKLFLE+F
Sbjct: 236 SNNDKLV-----QFYAKTTEFDKFLLSYVIFKLNLIKGKTIVFVNNIDRGYRLKLFLEQF 290
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK-- 245
GI+ ILN+ELP NSRLHI+EEFN ++ LIATD+ EKD+ E + D + S+K
Sbjct: 291 GIRCCILNSELPINSRLHIVEEFNKNVYHLLIATDEISV-EKDEG-ENDNEDGKSSQKVV 348
Query: 246 -HP---KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
+P K+K D E+GV RG+DFKNV V+NF++P + YVHRIGRT RA +G ++S V
Sbjct: 349 DNPKAKKSKKDKEYGVSRGVDFKNVACVLNFDLPTTSKAYVHRIGRTARAGKSGMALSFV 408
Query: 302 SPDE------------MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 349
+ K E+I S + + ++ I P+ VE RYRA+D
Sbjct: 409 VASKEVGKHKTATLSTAKRDEKILSRIVKQQEKNGFEIKPYQ-FDMKQVEGFRYRADDAF 467
Query: 350 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 409
++VT+ A+RE+R ++L+NE++NSEKLK F+ NP++L L+HDK+L +HL+++P+
Sbjct: 468 RAVTQTAIREARVKELKNELINSEKLKRFFQENPQNLASLRHDKELHPARVQAHLKNLPE 527
Query: 410 YLLDAKTQEACKMVKLARAAMGNK-NSSRRQGPRRKFRKSDPLKSF 454
YLL + K + NK N R++G + RK DPLKSF
Sbjct: 528 YLLPESARSDVKNIGFVPFHNKNKVNKYRKKGKPK--RKQDPLKSF 571
>gi|21312650|ref|NP_080814.1| probable ATP-dependent RNA helicase DDX56 [Mus musculus]
gi|20139152|sp|Q9D0R4.1|DDX56_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
Full=ATP-dependent 61 kDa nucleolar RNA helicase;
AltName: Full=DEAD box protein 56
gi|12847068|dbj|BAB27426.1| unnamed protein product [Mus musculus]
gi|17390686|gb|AAH18291.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Mus musculus]
gi|26345784|dbj|BAC36543.1| unnamed protein product [Mus musculus]
gi|26346376|dbj|BAC36839.1| unnamed protein product [Mus musculus]
gi|74143954|dbj|BAE41278.1| unnamed protein product [Mus musculus]
gi|74204609|dbj|BAE35375.1| unnamed protein product [Mus musculus]
gi|74216851|dbj|BAE26549.1| unnamed protein product [Mus musculus]
gi|148708631|gb|EDL40578.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Mus musculus]
Length = 546
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 180/447 (40%), Positives = 260/447 (58%), Gaps = 32/447 (7%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L L+ DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAVLMEKPDVVVGTPSRVLSHLQQNTLK---LRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+ED+LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEDELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ KAL+F NT++ +RL+LFLE+F I S
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPS 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN GL+D +IATD + + G R SK + +
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGLYDCVIATDAEILGPQVKGKRRG----RGSKGNKAS-- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P A YVHR GRT RA N G ++ V P E +
Sbjct: 340 DPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPAEQPFLGK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + ++ I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEDLLSGE--GEAPILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL VPDYL+ A A +
Sbjct: 457 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPA-----------ALRGLV 505
Query: 432 NKNSSRRQGP----RRKFRKSDPLKSF 454
+ RR+ P +K + +PL+ F
Sbjct: 506 HPRKKRRKVPFSRKAKKVKAQNPLRDF 532
>gi|149047667|gb|EDM00337.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Rattus norvegicus]
Length = 546
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 183/451 (40%), Positives = 260/451 (57%), Gaps = 40/451 (8%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L L+ DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAVLMEKPDVVVGTPSRILNHLQQKNLK---LRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+ED+LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEDELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ KAL+F NT++ +RL+LFLE+F I S
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPS 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATD----DTQTKEKDQSDEGGHVDSRKSKKHP 247
+LN ELP SR HI+ +FN GL+D +IATD Q K K Q + K
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGLYDCVIATDAEILGPQVKAKRQG---------RGSKGD 336
Query: 248 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
KA D E GV RGIDF +V V+NF++P A YVHR GRT RA N G ++ V P E
Sbjct: 337 KAS-DPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPTEQS 395
Query: 308 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 367
+I+ + + + I+ P+ + +ES RYR D +SVTK A+RE+R ++++
Sbjct: 396 SLGKIEELLSGEGQ--APILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKE 452
Query: 368 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLAR 427
E+L+SEKLK +FE NP+DL LL+HD L HL +VPDYL+ A A
Sbjct: 453 ELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPA-----------AL 501
Query: 428 AAMGNKNSSRRQGP----RRKFRKSDPLKSF 454
+ + RR+ P +K + +PL+ F
Sbjct: 502 RGLVHPRKKRRKMPFSRKAKKVKTQNPLRDF 532
>gi|443897458|dbj|GAC74798.1| RNA helicase [Pseudozyma antarctica T-34]
Length = 660
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 192/495 (38%), Positives = 274/495 (55%), Gaps = 84/495 (16%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL- 86
R L+ PD+VIATP L G L KS L+ L +DEADL+LSYG++ D+K+L
Sbjct: 181 RLLLSEKPDVVIATPSKALSYLQNGSLDLKS---GLETLAIDEADLILSYGHDSDVKSLL 237
Query: 87 -SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
+ +P Q LMSAT +SDV KLK L+L NP +L L E D+ N+ QF+
Sbjct: 238 GGSFLPSHFQSFLMSATMTSDVSKLKGLLLRNPVVLKLNET----DDAAGSNLVQFYTRT 293
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
+E DK L + +LKL+L++ KA++F N ++ +RLKLFLEKFG+++ +LNAELP NSR
Sbjct: 294 TEEDKFLLVYVILKLKLIRGKAILFVNDLERGYRLKLFLEKFGLRACVLNAELPINSRYS 353
Query: 206 ILEEFNAGLFDYLIATDD--------TQTKEKDQSDEGGHV------DSRKSKKH----- 246
I+EEFN G FDY++ATD+ + + + +DEG V DS K +K
Sbjct: 354 IVEEFNKGKFDYIVATDEPTGINQEAEEGSDDESADEGEDVAENAEDDSTKKRKSGAAEG 413
Query: 247 ----PKAKLD--------SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
KAK + +EFGV RG+DF NV VINF++P + GY+HR+GRT R +
Sbjct: 414 KAAGKKAKREGKKGSAGAAEFGVSRGVDFVNVSCVINFDLPTSVDGYIHRVGRTARGGAS 473
Query: 295 GASVSLVSPD----------------EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAV 338
G ++S V P + +F +I+ N + + A ++V
Sbjct: 474 GTALSFVVPSSEFGRSKYLSCGSTRRDESVFRQIQR-----RNAAGGELQEWKYDA-SSV 527
Query: 339 ESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD-LSK 397
E RYR D KS+T+ +RE+R ++L+ E+L S KL+AHFE +P DL L+HD+ LS
Sbjct: 528 EGFRYRVGDTLKSITRTLIREARIKELKAELLTSAKLQAHFEDHPDDLAYLQHDRALLST 587
Query: 398 KPPASHLRDVPDYLLDAKTQEACKMVKLA----RAAMG----NKNSSRRQGPRRKFRKSD 449
+ HL+ VP YL A K++ + RA G NK S +G RK RK+
Sbjct: 588 RSGQQHLKHVPAYL-------APKIINNSMAQPRAYTGYVPKNKPS---EGKNRKNRKA- 636
Query: 450 PLKSFSAEPTKRAGK 464
+SF+A K+ GK
Sbjct: 637 --RSFTAASGKKPGK 649
>gi|51948394|ref|NP_001004211.1| probable ATP-dependent RNA helicase DDX56 [Rattus norvegicus]
gi|50925531|gb|AAH78919.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Rattus norvegicus]
Length = 482
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 183/451 (40%), Positives = 260/451 (57%), Gaps = 40/451 (8%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L L+ DSL++LV+DEAD
Sbjct: 49 VRVANVSAAEDSASQRAVLMEKPDVVVGTPSRILNHLQQKNLK---LRDSLELLVVDEAD 105
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+ED+LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 106 LLFSFGFEDELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQL 161
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ KAL+F NT++ +RL+LFLE+F I S
Sbjct: 162 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPS 221
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATD----DTQTKEKDQSDEGGHVDSRKSKKHP 247
+LN ELP SR HI+ +FN GL+D +IATD Q K K Q + K
Sbjct: 222 CVLNGELPLRSRCHIISQFNQGLYDCVIATDAEILGPQVKAKRQG---------RGSKGD 272
Query: 248 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
KA D E GV RGIDF +V V+NF++P A YVHR GRT RA N G ++ V P E
Sbjct: 273 KAS-DPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPTEQS 331
Query: 308 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 367
+I+ + + + I+ P+ + +ES RYR D +SVTK A+RE+R ++++
Sbjct: 332 SLGKIEELLSGEGQ--APILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKE 388
Query: 368 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLAR 427
E+L+SEKLK +FE NP+DL LL+HD L HL +VPDYL+ A A
Sbjct: 389 ELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPA-----------AL 437
Query: 428 AAMGNKNSSRRQGP----RRKFRKSDPLKSF 454
+ + RR+ P +K + +PL+ F
Sbjct: 438 RGLVHPRKKRRKMPFSRKAKKVKTQNPLRDF 468
>gi|255718829|ref|XP_002555695.1| KLTH0G15224p [Lachancea thermotolerans]
gi|238937079|emb|CAR25258.1| KLTH0G15224p [Lachancea thermotolerans CBS 6340]
Length = 596
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 177/430 (41%), Positives = 253/430 (58%), Gaps = 41/430 (9%)
Query: 16 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 74
+ L+S + S L + L P+++I+TP + L T +S + S + LK LV+DE DL+
Sbjct: 129 LNLSSQLSESVLTSLLLDRPEVLISTPSKLLNVLET---KSSALSLEDLKFLVIDEVDLV 185
Query: 75 LSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L++GY++DL +S+ +P + Q LMSAT + D+ LK +P IL L E KD+
Sbjct: 186 LTFGYQEDLNQISSYLPLKKNLQTFLMSATLNEDIQDLKMRFCRSPAILKLNEEEINKDQ 245
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ Q+++ SE DK L + KL L++ K LIF N ID +RLKL LE+FGIKS
Sbjct: 246 ---SKLLQYYVKVSEFDKFLLCYVIFKLGLLKGKTLIFVNNIDRGYRLKLVLEQFGIKSC 302
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ------SDEGGHVD------- 239
ILN+ELP NSR HI+EEFN ++ LIATDDT+ ++++ DEG +
Sbjct: 303 ILNSELPANSRQHIVEEFNKNVYQLLIATDDTEYIKEEEDGQNLSDDEGAGENTADANSS 362
Query: 240 ---SRKSK-KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG 295
S+K K K K D ++GV RG+DF+NV V+NF++P A YVHRIGRT RA +G
Sbjct: 363 ASTSKKEKNKGINLKKDKDYGVSRGVDFQNVACVLNFDLPTTAKSYVHRIGRTARAGKSG 422
Query: 296 ASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA---------PFPLLAQN----AVESLR 342
++S V P +K F + K + D I++ F +L + VE R
Sbjct: 423 VAISFVVP--LKEFAKHKPSMCPTAKRDEKILSRIIKQQSKLGFEILPYSFDIKQVEGFR 480
Query: 343 YRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPAS 402
YR ED ++VT++AVRE+R ++L+ E+L S KLK HFE NP+DL L+HDK+L
Sbjct: 481 YRMEDGFRAVTQVAVREARVKELKQELLTSSKLKRHFEENPQDLQSLRHDKELHPARVQQ 540
Query: 403 HLRDVPDYLL 412
HL+ VPDYLL
Sbjct: 541 HLKRVPDYLL 550
>gi|67540408|ref|XP_663978.1| hypothetical protein AN6374.2 [Aspergillus nidulans FGSC A4]
gi|74680800|sp|Q5AZA6.1|DBP9_EMENI RecName: Full=ATP-dependent RNA helicase dbp9
gi|40739568|gb|EAA58758.1| hypothetical protein AN6374.2 [Aspergillus nidulans FGSC A4]
gi|259479407|tpe|CBF69600.1| TPA: ATP-dependent RNA helicase dbp9 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5AZA6] [Aspergillus
nidulans FGSC A4]
Length = 610
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 184/487 (37%), Positives = 277/487 (56%), Gaps = 57/487 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + +A LA PDIV++TP + L T L ++ + LV+DEAD
Sbjct: 133 VRSVNLTQKVSDAVQKAMLADYPDIVVSTPARVIANLGTSALSLENLTH----LVIDEAD 188
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGYEDD+ ALS IPRG Q LMSAT +++VD LK L +P IL L + D
Sbjct: 189 LVLSYGYEDDINALSKAIPRGVQTFLMSATLTAEVDTLKGLFCRSPVILKLEDKDDHG-- 246
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF ID ++RLKLFLE+FGIKS
Sbjct: 247 ---AGVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRSYRLKLFLEQFGIKSC 303
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT-------KEKDQS----------DEG 235
ILN+ELP NSR+H++EEFN G++D +IA D+ + K KD + DE
Sbjct: 304 ILNSELPVNSRIHVVEEFNKGVYDIIIAADEQEVLGVSKSRKSKDATEGDDELLSDEDEE 363
Query: 236 GHVDSRKSKKHPKAKLDS---EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 292
+ ++ + KL S ++G+ RGIDF+NV V+NF++P ++ Y HRIGRTGR
Sbjct: 364 TSAKAASTRTDKRRKLSSKEKDYGISRGIDFQNVACVLNFDLPTSSKSYTHRIGRTGRGG 423
Query: 293 NTGASVSLVSPDE------------MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVES 340
TG ++S V P + K E + + + + + + + P+ V++
Sbjct: 424 KTGMALSFVIPADKYGKHKPTSISSAKHDEAVLAKIIKRQAKLGHEVKPYH-FDMTQVDA 482
Query: 341 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPP 400
RYR D +++T++A++E+RA+++R E++ SEKLK HFE NP++L L+HD +L
Sbjct: 483 FRYRMSDALRAITRLAIQEARAREIRQELVKSEKLKRHFEENPEELRQLRHDGELRAARI 542
Query: 401 ASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGN-------KNSSRRQGPRRKFRKS 448
HL+ +P+YL+ AK + E V L + N +N R + P RK
Sbjct: 543 QPHLKHIPEYLMPAKGKKGISNEDVGFVSLRKTGPENRIRKARDRNRGRGKKPGRKI--- 599
Query: 449 DPLKSFS 455
DPLK+F+
Sbjct: 600 DPLKTFN 606
>gi|393227212|gb|EJD34901.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 521
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 177/447 (39%), Positives = 256/447 (57%), Gaps = 74/447 (16%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL-KILVLDEADLLLSYGYEDDL 83
S L++ LA PDIVI+TP + LS +LQSK + +L + LV+DEADL+LSYG+++D+
Sbjct: 38 SHLKSILADSPDIVISTPA---RALS--LLQSKVLTLALMESLVIDEADLILSYGHDEDM 92
Query: 84 KAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 141
K + P Q LMSAT + DV+ LK L+L +P IL L E DE + N+ Q+
Sbjct: 93 KQILGGGFFPSVYQSYLMSATMTKDVETLKGLVLRSPAILRLEE-----DEDVAANLSQY 147
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ C+E DK L +LKL+LV+ K L+F N +D +RLKLFLE+F IKS +LN+ELP N
Sbjct: 148 AVRCNEVDKFLLTYVMLKLKLVKGKCLVFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLN 207
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEK-------------------------DQSDEGG 236
SR HI++EFN G++DY+IATD++ K + Q G
Sbjct: 208 SRFHIVQEFNKGVYDYIIATDESGEKAEADSDAESESEAEAEDEDEADPDMLPTQRPAEG 267
Query: 237 HVDSRKS--------------KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYV 282
+K+ KK K D E+GV RG+DF +V V+NF++P +A Y
Sbjct: 268 EAPPKKTLKRKRGTPPPPLTQKKRQKKAGDREYGVSRGVDFVDVACVLNFDLPSSARAYT 327
Query: 283 HRIGRTGRAYNTGASVSLVSP-DEM----------------KIFEEIKSFVGDDENEDSN 325
HR+GRT RA +G +++ V P DE K+F+ I+ +D+ +
Sbjct: 328 HRVGRTARAGKSGMALAFVVPKDEFGKNKVVGGVPSTKRDEKVFKRIE----EDQAARGS 383
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
IA + V S RYR +D ++VT+ A++E+R ++L++EILNS+KLKAHFE NP D
Sbjct: 384 KIAEYA-FDMKQVNSFRYRMDDALRAVTRAAIKEARVKELKSEILNSDKLKAHFEDNPLD 442
Query: 386 LDLLKHDKDLSKKPPASHLRDVPDYLL 412
L+ L+HDK L H++ VP YL+
Sbjct: 443 LEYLRHDKALHPTRVQPHMKHVPKYLM 469
>gi|46111741|ref|XP_382928.1| hypothetical protein FG02752.1 [Gibberella zeae PH-1]
gi|91206554|sp|Q4IJ56.1|DBP9_GIBZE RecName: Full=ATP-dependent RNA helicase DBP9
Length = 615
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 265/477 (55%), Gaps = 43/477 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ +LT + + RA L+ PDIVI+TP + +++ L D L L+LDEAD
Sbjct: 144 ISTAKLTDKVSSKVQRALLSNSPDIVISTPSTAWQNVNSSALSI----DKLTHLILDEAD 199
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY +DL+ LS +P+G Q ++MSAT S +VD LK + +P +L L E E
Sbjct: 200 LVLSYGYSEDLENLSRSVPKGVQVMMMSATLSDEVDTLKGIFRRDPTLLDLKE-----KE 254
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ + QF C E +K L + KL+L++ K +IF + ID +RLKLF E+FGI+S
Sbjct: 255 AEGEGITQFVAKCGEDEKFLLAYVIFKLKLIKGKCIIFVSDIDRCYRLKLFFEQFGIRSC 314
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEG----GHVDSRKSKKHPK 248
ILN+ELP NSR+H++EEFN ++D +IA D+ D + D++KS +
Sbjct: 315 ILNSELPLNSRVHVVEEFNRHVYDIIIAADEKNEMLGDDEEPAETAEAQDDAKKSNEGDD 374
Query: 249 AKLDS---------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 293
A+ ++ E+GV RG+DFK V VINF++P A+ Y HRIGRT RA
Sbjct: 375 AETEAKRPKKKAKKSKGGDKEYGVSRGVDFKKVSAVINFDLPTTASAYTHRIGRTARAGQ 434
Query: 294 TGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESL 341
TG ++S V P ++ + E+I + + + + + P+ + V+
Sbjct: 435 TGMALSFVVPKDLYRKHMPTSTPACENDEKIMARIIRQQAKRDKEVKPYNFNMKQ-VDPF 493
Query: 342 RYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA 401
RYR D ++VTK+A+RE+R ++LR E+L SEKLK +FE NP +L L+HD +L
Sbjct: 494 RYRMNDALRAVTKVAIREARTRELRQELLKSEKLKRYFEENPTELSHLRHDGELRTARQQ 553
Query: 402 SHLRDVPDYLL--DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 456
+HL+ +P+YL+ D K + +A + +G + RK DPLK+F A
Sbjct: 554 AHLKHIPEYLMPKDGKQALTEDVGFVAMRKDKKGKGKKGRGFKVGSRKRDPLKTFKA 610
>gi|310795147|gb|EFQ30608.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 594
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/471 (38%), Positives = 274/471 (58%), Gaps = 39/471 (8%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ ++L + + R+ L+ PD+VI+TP + + + L +L +VLDEAD
Sbjct: 133 IHAIKLVDKISDAVQRSLLSNFPDVVISTPATAWRNIVSEAL----LLGNLTSIVLDEAD 188
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L++SYGY +DL+ ++ +P+G Q +MSAT S+DV L+ P IL L + +E
Sbjct: 189 LIMSYGYNEDLENIARKLPKGVQLTMMSATLSTDVTTLQGTFGRKPTILDLDD-----EE 243
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
++ QF +SC E +K L + KL+LV+ K LIF N +D ++RLKLFLE+F ++S
Sbjct: 244 TEGDSLSQFVVSCGEDEKFLLAFIIFKLKLVKGKCLIFVNDVDRSYRLKLFLEQFQVRSC 303
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK-------SKK 245
ILN+ELP SR H+LEEFN G++D +IA+D+ ++ D D+ + SKK
Sbjct: 304 ILNSELPVTSRAHVLEEFNRGVYDIIIASDEKSAMGAEEKDGEEEEDTEQRQKEKEQSKK 363
Query: 246 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
K+K DSEFGV RGIDFKNV V+NF++P +A+ Y HRIGRT RA TG ++S P E
Sbjct: 364 KRKSKRDSEFGVSRGIDFKNVAAVVNFDLPTSASSYTHRIGRTARAGRTGMALSFYVPTE 423
Query: 306 M------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVT 353
+ + E+I + + + + + P+ ++ +++ RYR D ++VT
Sbjct: 424 LYRKHLPTSIETAEHDEKILARIKKQQAKQGKEVKPYSFKKEH-LDAFRYRLNDALRAVT 482
Query: 354 KIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL- 412
K+AVRE+R ++L+ E+L SEKLK +FE NP +L L+HD +L HL+ +P+YLL
Sbjct: 483 KVAVREARMRELKQELLKSEKLKRYFEENPTELQHLRHDGELRTARQQPHLKHIPEYLLP 542
Query: 413 ----DAKTQEACKMVKLARAAMGNKNSSRRQGPRRK---FRKSDPLKSFSA 456
D+ T+ MV + +G K + P RK RK +PLK+F A
Sbjct: 543 KEGKDSLTKNDVGMVPFRK--VGGKQRRNKGKPGRKKIGTRKVNPLKTFKA 591
>gi|157106028|ref|XP_001649134.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108879960|gb|EAT44185.1| AAEL004445-PA [Aedes aegypti]
Length = 548
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 243/401 (60%), Gaps = 12/401 (2%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V L++ + L+ LA PDIV++TP + L G + S DSL+ LV+DEAD
Sbjct: 114 VRCVDLSTKVDKVALKHILAERPDIVVSTPAKLVSQLQEGNI---SVKDSLQTLVVDEAD 170
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+ ++G+E+DLK + P Q +L SAT DV +LKK+ILHNP IL L E E
Sbjct: 171 LMFTFGFENDLKTVLDYFPSVHQSILASATLEKDVMELKKIILHNPVILKLEE-----PE 225
Query: 133 VIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ P + + + I E DK + TL KL+LV+ K++IF N+ID +RLKLFLE+F I+S
Sbjct: 226 MAPASQLAHYHILAEEVDKAAVLYTLFKLQLVKGKSIIFVNSIDRCYRLKLFLEQFSIRS 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
ILN+ELP R H + +FN GL+D +IA+D+ D S +K K ++
Sbjct: 286 CILNSELPAKIRCHTVNQFNQGLYDIIIASDELHV--LDPSVNEKKGQKKKMIKQIAKQV 343
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
+SE GV RGIDF+ V VINF+ P++ Y+HR GRT R NTG+ +SLVS +E + +
Sbjct: 344 ESEAGVSRGIDFQFVSNVINFDFPKDVNAYIHRAGRTARGNNTGSVLSLVSIEEKEAMDA 403
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
++ + E ++ + + VE RYRA D ++VTK ++RE+R ++++ E+ N
Sbjct: 404 VEDHLRPGYEEGDQVLKSYHFKMEE-VEPFRYRARDAWRAVTKFSIREARIKEIKTEMFN 462
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
SEKLK+ FE NP+DL L+HD+ L HL DVP+Y++
Sbjct: 463 SEKLKSFFEENPRDLQALRHDRTLHTVKVQEHLGDVPEYIV 503
>gi|302685648|ref|XP_003032504.1| hypothetical protein SCHCODRAFT_67090 [Schizophyllum commune H4-8]
gi|300106198|gb|EFI97601.1| hypothetical protein SCHCODRAFT_67090 [Schizophyllum commune H4-8]
Length = 610
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 171/451 (37%), Positives = 254/451 (56%), Gaps = 56/451 (12%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-D 61
L+ C+G+V V+ + S A R ++ IVIATP + LQSK+ S
Sbjct: 116 LLAYCEGEVS--VINVASGNTAGLQRTLISDTHHIVIATP-----SRALAFLQSKALSLS 168
Query: 62 SLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY 119
+L LV+DEADL+LSYG+++D++ + +P+ Q LMSAT + DV+ LK L L NP
Sbjct: 169 ALDSLVIDEADLILSYGHDEDVRGIFNGGYLPKVYQSFLMSATMTEDVEMLKGLALRNPA 228
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
IL L E + N+ Q+ + C++RDK L +LKL+L+ K +IF N +D +R
Sbjct: 229 ILKLEE------DPAAANLTQYAVRCTQRDKFLLTYVILKLKLIHGKCIIFVNDVDRCYR 282
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT--------------- 224
LKLFLE+F IKS +LN+ELP NSR H ++EFN G++DY+IATD++
Sbjct: 283 LKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIATDESGLGERDEEDIERETE 342
Query: 225 --------------QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+ + D K P+A D E+GV RG+DF +V V+
Sbjct: 343 AEAAGEEEAESSEDEAAKPDPPSASSAASPPTKAKRPRAS-DREYGVTRGVDFLDVAAVL 401
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG--DDE-------N 321
NF++P +A Y HR+GRT RA G ++S VS ++ + + +G D+E
Sbjct: 402 NFDLPGSARAYTHRVGRTARAGRAGMALSFVSRPDLSDKDPVNRTLGRRDEEVFARIERE 461
Query: 322 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 381
+ + + + + VE+ RYR ED +SVT++AVRE+R ++L+ E+L SEKLKAHFE
Sbjct: 462 QGAGAVKEYRFDMRQ-VEAFRYRMEDALRSVTRVAVREARVRELKAEVLGSEKLKAHFED 520
Query: 382 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
NP DL+ LKHD+ L + H++ VP YL+
Sbjct: 521 NPLDLEFLKHDRALHPQRVQPHMKFVPKYLI 551
>gi|354485265|ref|XP_003504804.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Cricetulus
griseus]
gi|344252527|gb|EGW08631.1| putative ATP-dependent RNA helicase DDX56 [Cricetulus griseus]
Length = 545
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 182/447 (40%), Positives = 255/447 (57%), Gaps = 33/447 (7%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L L+ DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLK---LRDSLELLVIDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+ED+LK L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEDELKGLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ KAL+F NT++ +RL+LFLE+F I S
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPS 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD E G R SK A
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATD----AEILGPPVKGKRRGRGSKGDKAA-- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P YVHR GRT RA N G ++ V P E +
Sbjct: 340 DPESGVARGIDFHHVSAVLNFDLPPTPEAYVHRAGRTARANNPGIVLTFVLPTEQSCLAK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I++ + E I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEALLS---GEGEAILLPYQFRMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLH 455
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL +VPDYL+ A A +
Sbjct: 456 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPA-----------ALRGIV 504
Query: 432 NKNSSRRQGPR----RKFRKSDPLKSF 454
+ RR+ P +K R +PL+ F
Sbjct: 505 HPRKKRRKLPPCKKVKKVRTQNPLRDF 531
>gi|342874553|gb|EGU76555.1| hypothetical protein FOXB_12929 [Fusarium oxysporum Fo5176]
Length = 614
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 265/480 (55%), Gaps = 50/480 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ V+LT + + RA L+ PDIVI+TP ++ L D L L+LDEAD
Sbjct: 144 ISTVKLTDKVSNAVQRALLSNSPDIVISTPATAWHNANSSALSI----DKLTHLILDEAD 199
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY +DL+ LS +P+G Q ++MSAT + +VD LK + +P +L L E E
Sbjct: 200 LVLSYGYSEDLENLSRSVPKGIQVMMMSATLTDEVDALKGIFRRDPTLLDLKE-----KE 254
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ + QF C E +K L + KL+L++ K +IF + ID +RLKLF E+FGI+S
Sbjct: 255 AEGEGITQFVAKCGEDEKFLLAYVIFKLKLIKGKCIIFVSDIDRCYRLKLFFEQFGIRSC 314
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD--EGGHVDSRKSKKHPKAK 250
ILN+ELP NSR+H++EEFN ++D +IA D+ D + EG D+ K A+
Sbjct: 315 ILNSELPLNSRVHVVEEFNKHVYDIIIAADEKNEMMGDDEEPVEGETEDAEKQGDGDDAE 374
Query: 251 LDS---------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG 295
++ E+GV RG+DFK V VINF++P A+ Y HRIGRT RA TG
Sbjct: 375 TEAKRPKKKAKKSKGGDKEYGVSRGVDFKKVSAVINFDLPTTASAYTHRIGRTARAGQTG 434
Query: 296 ASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNA---------------VES 340
++S V P ++ + + + EN D ++A ++ Q A V+
Sbjct: 435 MALSFVVPKDL-YRKHMPTSTPASEN-DEKVMA--KIIRQQAKRGKEVKPYNFNMKQVDP 490
Query: 341 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPP 400
RYR D ++VTK+++RE+R ++LR E+L SEKLK +FE NP +L L+HD +L
Sbjct: 491 FRYRMNDALRAVTKVSIREARTRELRQELLKSEKLKRYFEENPTELTHLRHDGELRTARQ 550
Query: 401 ASHLRDVPDYLLDAKTQEACK----MVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 456
+HL+ +P+YLL ++A V L R + +G + RK DPLK+F A
Sbjct: 551 QAHLKHIPEYLLPKDGKQALTNDIGFVAL-RKDRKGHKGKKGRGFKVGSRKRDPLKTFKA 609
>gi|296423379|ref|XP_002841232.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637467|emb|CAZ85423.1| unnamed protein product [Tuber melanosporum]
Length = 590
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 165/414 (39%), Positives = 252/414 (60%), Gaps = 29/414 (7%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ + L ++ ++ L+ D+V++TP ++ S+S + L LV+DEA
Sbjct: 136 HIRSINLAQNISEKVQQSLLSEKQDVVVSTPSRALVHINI----SESLTSQLTHLVIDEA 191
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+LSYGYE+DL+ +S +P+G Q LMSAT +++V+ LK L NP IL L E D +
Sbjct: 192 DLVLSYGYENDLQGVSKALPKGLQTFLMSATLTTEVETLKSLFCRNPAILRLEEDVDAEG 251
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
E + Q+ + CSE +K L + + KL+L++ K +IF ID ++R+KLFLE+FGI+S
Sbjct: 252 E----GLTQYCVKCSEDEKFLLLYVIFKLKLIKGKTIIFVGDIDRSYRVKLFLEQFGIRS 307
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN+ELP NSRLHI+EEFN +++ +IA+D+ + E + + K KK+ K +
Sbjct: 308 CVLNSELPVNSRLHIVEEFNKNVYEIIIASDENEQAEPEPT------PKSKKKKNAKNRK 361
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM--KIF 309
D E+G+ RG+DFKN+ V+NF++P + Y HRIGRT RA+ G S+S V P + K
Sbjct: 362 DKEYGISRGLDFKNLACVLNFDLPTTSKSYTHRIGRTARAHKNGISLSFVIPTHLFGKHK 421
Query: 310 EEIKSFVGDDENEDSNI----------IAPFPL-LAQNAVESLRYRAEDVAKSVTKIAVR 358
++E I I P+ +AQ V++ RYR +D ++VTKIAVR
Sbjct: 422 PTTHPICANNEKTLQRIRRSQAKLGREIKPYVFDMAQ--VDAFRYRMDDALRAVTKIAVR 479
Query: 359 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
E+R ++LR E++ SE+LK HFE NP+DL L+HD + + +HLR VP YLL
Sbjct: 480 EARMRELRVELVKSERLKRHFEENPEDLLALRHDGESGRVRVQAHLRHVPGYLL 533
>gi|367016957|ref|XP_003682977.1| hypothetical protein TDEL_0G03990 [Torulaspora delbrueckii]
gi|359750640|emb|CCE93766.1| hypothetical protein TDEL_0G03990 [Torulaspora delbrueckii]
Length = 588
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 186/471 (39%), Positives = 269/471 (57%), Gaps = 39/471 (8%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
+K + +S M + L + L P+I+IATP + L T + + S ++LK LV+DE
Sbjct: 127 VKNLNASSDMSHAVLSSLLLESPEIIIATPAKLLSLLETNI---NAISLENLKFLVIDEV 183
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+LS+GY+DDL +S +P + Q LMSAT + D+ LKK +P IL +
Sbjct: 184 DLVLSFGYQDDLTKISEFLPLQKSLQTFLMSATLNDDIQDLKKRFCRSPAILKFNDDQIT 243
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
KD+ + Q+++ +E DK L + KL L++ K+LIF N ID +RLKL LE+FGI
Sbjct: 244 KDD---SKLLQYYVKTTEFDKFLLCYVIFKLGLIKGKSLIFVNNIDRGYRLKLVLEQFGI 300
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--------TKEKDQSDEGGHVDSR 241
KS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE + S++ VD +
Sbjct: 301 KSCILNSELPANSRQHIVDQFNKNVYQLLIATDDTEYIREEDEEEKESEVSEDSKEVDGK 360
Query: 242 KSKKHPK---AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 298
+ K K K D E+GV RG+DFKNV V+NF++P A YVHR+GRT RA +G ++
Sbjct: 361 NNNKKIKRLQVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARAGKSGTAI 420
Query: 299 SLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVESLRYR 344
S V P +K F + K + D I+ P+ VE RYR
Sbjct: 421 SFVVP--LKEFGKHKPSMCPTAKRDEKILTRIIKQQSKLGLELQPYS-FDNKQVEGFRYR 477
Query: 345 AEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHL 404
ED ++VT++AVRE+R ++L+ E+L S+KLK HFE NP++L L+HDK+L HL
Sbjct: 478 LEDGFRAVTQVAVREARIKELKQELLASDKLKRHFEENPQELQSLRHDKELHPARVQQHL 537
Query: 405 RDVPDYLL-DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
+ VP+YLL D+ Q K + K + + +R KSDPLK+F
Sbjct: 538 KRVPEYLLPDSVKQGKSKKIGFVPFHKPKKAHKKGKVQKRN-GKSDPLKNF 587
>gi|156552886|ref|XP_001600943.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Nasonia
vitripennis]
Length = 555
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 172/423 (40%), Positives = 248/423 (58%), Gaps = 33/423 (7%)
Query: 5 ELCKGQVQLKVVQLTSSM----------PASDL---RAALAGPPDIVIATPGCMPKCLST 51
ELCK Q+ V LT+ P +L + LA PDIVIATPG + L
Sbjct: 104 ELCK-QIHEVFVNLTTKCSREVRCLDISPQVELSVQKPLLAENPDIVIATPGRALQHLKA 162
Query: 52 GVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK 111
L K SL+ L++DEADL+ S+GYE+++K L A +P Q +L SAT S DV LK
Sbjct: 163 KNLNVKK---SLETLIIDEADLIFSFGYEEEIKTLLAYLPTVYQAILASATLSEDVLSLK 219
Query: 112 KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFT 171
KL+LHNP IL L E P + + ++ E DK + LLKL L++ K +IF
Sbjct: 220 KLVLHNPAILKLEE----PPLAPPSQLAHYTLAAEENDKAAILYALLKLHLIRGKCIIFV 275
Query: 172 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ 231
NT+D ++LKLFLE+FGI + +LN+ELP +SR + +FN+G +D +IA+D+ +E
Sbjct: 276 NTVDRCYKLKLFLEQFGIPTCVLNSELPASSRCRAVTQFNSGTYDIIIASDEKALEEP-- 333
Query: 232 SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 291
HV +K K K D E GV RGIDF+ V VINF+ P + Y+HR GRT R
Sbjct: 334 -----HVMKQKRGKRRK---DKESGVARGIDFQFVSNVINFDFPLDINAYIHRAGRTARG 385
Query: 292 YNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKS 351
N G ++S V+ E + E+++ + D ++ N+ + N VE RYR+ D K+
Sbjct: 386 KNQGTALSFVAIRERPMLEQVEEQLKKDYGQE-NLFKTYQ-FKLNEVEGFRYRSRDAWKA 443
Query: 352 VTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 411
VT+IAVRE+R ++++ E+L +KLK++FE NP+DL L+ DK L +HL+DVP+Y+
Sbjct: 444 VTRIAVREARLKEIKQEVLTCDKLKSYFEDNPRDLQSLRQDKALHTVRLQAHLKDVPEYI 503
Query: 412 LDA 414
+ A
Sbjct: 504 VPA 506
>gi|402216480|gb|EJT96567.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 621
Score = 291 bits (744), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 172/430 (40%), Positives = 250/430 (58%), Gaps = 62/430 (14%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL--SAVIPR 92
PDIVI+TP + LS+ L S ++ LV+DEADL+LSYG++ D++ L +P
Sbjct: 140 PDIVISTPSKVLSALSSKYLTLAS----VESLVIDEADLILSYGHDADVRKLLQGDYLPN 195
Query: 93 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLL 152
Q LMSAT + DV++L+ ++L NP IL L +D + +++ Q+ + CSE DK L
Sbjct: 196 IYQSFLMSATMTEDVEQLRGMVLRNPAILRL------EDTDVARSLSQYSVHCSEEDKFL 249
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
+ +LKL L++ K +IF N+ D +RLKLFLE+F I++ +L+AELP NSR HI++EFN+
Sbjct: 250 LLYVILKLRLIRGKCIIFVNSPDRCYRLKLFLEQFSIRACVLDAELPLNSRFHIVQEFNS 309
Query: 213 GLFDYLIATDDT----------QTKEKD-------------QSDEGGHV-----DSRKSK 244
GL+DY++ATD++ QTK++D Q DE + DS K K
Sbjct: 310 GLYDYVVATDESGVAAEGEEADQTKKEDTVIVEEQTTEISTQPDEDAIIESSTGDSLKRK 369
Query: 245 KHP------------KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 292
+ P + + D E+GV RGIDF +V VINF++P + Y HRIGRT RA
Sbjct: 370 RSPEPASQNKKKRKSRVRTDKEYGVSRGIDFVDVSCVINFDLPPTSRAYTHRIGRTARAG 429
Query: 293 NTGASVSLVSPDEMKIFEEIKSFVG--DDENEDSNIIAPFP--------LLAQNAVESLR 342
TG ++S + +I S G +DEN I+ + VE+ R
Sbjct: 430 KTGIAISFIVLFAHWGKNKIISLPGAKEDENVFDRILKDQSNRGGIKEWTFEEKQVEAFR 489
Query: 343 YRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPAS 402
YRA D ++VT+ AVRE+R ++++ EIL SEKLKAHFE NP DL L+HDK L + S
Sbjct: 490 YRAGDAMRAVTRAAVREARIKEVKEEILKSEKLKAHFEDNPLDLAYLRHDKPLHPQRIQS 549
Query: 403 HLRDVPDYLL 412
H++ +P YL+
Sbjct: 550 HMKHIPSYLI 559
>gi|19076031|ref|NP_588531.1| ATP-dependent RNA helicase Dbp9 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74676034|sp|O60080.1|DBP9_SCHPO RecName: Full=ATP-dependent RNA helicase dbp9
gi|3184061|emb|CAA19304.1| ATP-dependent RNA helicase Dbp9 (predicted) [Schizosaccharomyces
pombe]
Length = 595
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 192/506 (37%), Positives = 268/506 (52%), Gaps = 79/506 (15%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L C ++ V SS R L PDIVIATP +++GVL D
Sbjct: 111 LTAFCSKHIRFINVATNSSDTVQ--RPLLLDLPDIVIATPSRCVVHVASGVLPL----DK 164
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
LK LV+DEADL+LS+GY +D+K LS +PRG Q LMSAT S ++ L+KL+ NP+IL
Sbjct: 165 LKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILA 224
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
VKD+ + Q+ + CSE+DK L LLKL L++ K LIF N I+ +RLKL
Sbjct: 225 ------VKDKEASGKLTQYVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKL 278
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--------------TKE 228
FLE+FG+KS +LN+ELP NSRLHILE++N GL+ +IATD++ +E
Sbjct: 279 FLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEELENNVDFVEE 338
Query: 229 KDQSDEGGHVDSRKSKKHPKAKLDS-------------------EFGVVRGIDFKNVHTV 269
+ S + +D K +++ +S E+GV RG+DF+NV V
Sbjct: 339 EVISTDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRVKQDKEYGVARGLDFENVACV 398
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG-----------D 318
+NF+MP N Y+HRIGRT RA G ++S V P KS VG
Sbjct: 399 LNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVP---------KSEVGKHKPTSLESCKK 449
Query: 319 DEN-----EDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNS 372
DE+ E I + P+ +N +++ RYR ED ++VT +AV +RA +L+ E+L S
Sbjct: 450 DESVLRRLEKKQISLQPYS-FDKNQIDAFRYRMEDALRAVTTVAVSAARAAELKQELLIS 508
Query: 373 EKLKAHFEVNPKDLDLLKHDKDLSKK--PPASHLRDVPDYLLDAKTQEACKMVKLARAAM 430
EKLK++F NP +L L HD S + HLR VP+YLL Q K +
Sbjct: 509 EKLKSYFAENPDELLSLTHDTVSSVRLGHTQRHLRHVPEYLLPKGMQAVNKDIGFVPFKK 568
Query: 431 GNKNS--SRRQGPRRKFRKSDPLKSF 454
N+ R+ P+ + DPL+S
Sbjct: 569 NNRRKVFKSRKNPK---HRHDPLRSM 591
>gi|408390101|gb|EKJ69512.1| hypothetical protein FPSE_10337 [Fusarium pseudograminearum CS3096]
Length = 615
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 266/477 (55%), Gaps = 43/477 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ +LT + + RA L+ PDIVI+TP + +++ L D L L+LDEAD
Sbjct: 144 ISTAKLTDKVSSKVQRALLSNSPDIVISTPSTAWQNVNSSALSI----DKLTHLILDEAD 199
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY +DL+ LS +P+G Q ++MSAT S +VD LK + +P +L L E E
Sbjct: 200 LVLSYGYSEDLENLSRSVPKGVQVMMMSATLSDEVDTLKGIFRRDPTLLDLKE-----KE 254
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ + QF C E +K L + KL+L++ K +IF + ID +RLKLF E+FGI+S
Sbjct: 255 AEGEGITQFVAKCGEDEKFLLAYVIFKLKLIKGKCIIFVSDIDRCYRLKLFFEQFGIRSC 314
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV----DSRKSKKHPK 248
ILN+ELP NSR+H++EEFN ++D +IA D+ D+ + D++KS +
Sbjct: 315 ILNSELPLNSRVHVVEEFNRHVYDIIIAADEKNEMLGDEEEPTETAEAEDDAKKSNEGDD 374
Query: 249 AKLDS---------------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 293
A+ ++ E+GV RG+DFK V VINF++P A+ Y HRIGRT RA
Sbjct: 375 AETEAKRPKKKAKKSKGGDKEYGVSRGVDFKKVSAVINFDLPTTASAYTHRIGRTARAGQ 434
Query: 294 TGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESL 341
TG ++S V P ++ + E+I + + + + + P+ + V+
Sbjct: 435 TGMALSFVVPKDLYRKHMPTSTPACENDEKIMARIIRQQAKRDKEVKPYNFNMKQ-VDPF 493
Query: 342 RYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA 401
RYR D ++VTK+A+RE+R ++LR E+L SEKLK +FE NP +L L+HD +L
Sbjct: 494 RYRMNDALRAVTKVAIREARTRELRQELLKSEKLKRYFEENPTELSHLRHDGELRTARQQ 553
Query: 402 SHLRDVPDYLL--DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 456
+HL+ +P+YL+ D K + +A + +G + RK DPLK+F A
Sbjct: 554 AHLKHIPEYLMPKDGKQALTEDVGFVAMRKDKKGKGKKGRGFKVGSRKRDPLKTFKA 610
>gi|26344992|dbj|BAC36145.1| unnamed protein product [Mus musculus]
Length = 546
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 244/403 (60%), Gaps = 17/403 (4%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L L+ DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAVLMEKPDVVVGTPSRVLSHLQQNTLK---LRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+ED+LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEDELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ KAL+F NT++ +RL+LFLE+F I S
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPS 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN GL+D +IATD + + G R SK + +
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGLYDCVIATDAEILGPQVKGKRRG----RGSKGNKAS-- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P A YVHR GRT RA N G ++ V P E +
Sbjct: 340 DPESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPAEQPFLGK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + ++ I+ P+ + +ES RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEDLLSGE--GEAPILLPYQFQMEE-IESFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA 414
S KLK +FE NP+DL LL+HD L HL VPDYL+ A
Sbjct: 457 SGKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPA 499
>gi|336381184|gb|EGO22336.1| hypothetical protein SERLADRAFT_416842 [Serpula lacrymans var.
lacrymans S7.9]
Length = 633
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 182/479 (37%), Positives = 264/479 (55%), Gaps = 82/479 (17%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS- 60
L+ C+ + L + S + RA LA PDIVI+TP + G LQSK+ S
Sbjct: 113 GLVAYCEKNIVL--ANVASGATSHLQRALLADKPDIVISTPS-----RTLGFLQSKALSL 165
Query: 61 DSLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
SL L++DEADL+LSYG+++D++ + +P+ Q LMSAT + DV+ LK L L NP
Sbjct: 166 ASLDSLIIDEADLILSYGHDEDIRQIFGGEYLPKVYQSFLMSATMTDDVETLKGLALRNP 225
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
IL L E D ++ Q+ + CSE DK L +LKL+L++ K ++F N +D +
Sbjct: 226 AILKLEEGEDE-----AASLTQYAVRCSEVDKFLLTYVILKLKLIKGKCILFVNDVDRCY 280
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK-EKDQSDEG-- 235
RLKLFLE+F IKS +LN+ELP NSR H ++EFN G++DY+IATD++ + E+D DE
Sbjct: 281 RLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIATDESGGRAEQDSDDEAVE 340
Query: 236 -----------------------------GHVDSR--------------------KSKKH 246
G V S + +KH
Sbjct: 341 DQQAQAEEDVAVVPTQRESTDIENATEALGEVQSETGSKKRKRTEGSSTPGPSKSRKRKH 400
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS-LVSPDE 305
K K D E+GV RG+DF +V V+NF++P ++ Y HR+GRT RA TG S+S +VS D+
Sbjct: 401 RKGK-DKEYGVTRGVDFVDVACVLNFDLPTSSRSYTHRVGRTARAGRTGMSLSFVVSEDQ 459
Query: 306 M------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVT 353
K E + S + ++ + I + + VE+ RYR ED ++VT
Sbjct: 460 WGKNKAVGCLESAKKDELVFSKIEKEQAARGSKIKEYNFDMKQ-VEAFRYRMEDGLRAVT 518
Query: 354 KIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+ A++E+R ++L+ EI+NSEKLKAHFE NP DL+ L+HDK L +H++ VP YLL
Sbjct: 519 RSAIKEARVKELKTEIINSEKLKAHFEDNPLDLEYLRHDKPLHPTRVQAHMKHVPKYLL 577
>gi|410074969|ref|XP_003955067.1| hypothetical protein KAFR_0A04960 [Kazachstania africana CBS 2517]
gi|372461649|emb|CCF55932.1| hypothetical protein KAFR_0A04960 [Kazachstania africana CBS 2517]
Length = 591
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 275/475 (57%), Gaps = 43/475 (9%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+++ + ++ M + L + L P+IV+ATP + L T + S SD LK LV+DE
Sbjct: 127 EIRSLNVSGDMSNAVLNSLLLENPEIVVATPAKLMSLLETQT-NAISLSD-LKFLVIDEV 184
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTL--PEVG 127
DL+L++GY++DL ++ +P + Q LMSAT + D+ +LK+ P IL E+
Sbjct: 185 DLVLTFGYQEDLNKIAEYLPLKKNLQTFLMSATLNDDIQELKQKFCRAPAILKFNDDEIN 244
Query: 128 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
K ++I Q+++ +E DK L + KL L++ K+L+F N ID +RLKL LE+F
Sbjct: 245 KDKTKLI-----QYYVKTNEFDKFLLCYVIFKLGLIKGKSLVFVNDIDRGYRLKLVLEQF 299
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEGGHVDSRKSKK- 245
GIKS ILN+ELP NSR HI+++FN ++ LIATDDT+ KE+D+ E ++ +++
Sbjct: 300 GIKSCILNSELPANSRQHIVDQFNKNVYHLLIATDDTEYIKEEDEGIEENRLEDSVAEET 359
Query: 246 --------HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
++K D E+GV RG+DFKNV V+NF++P + YVHRIGRT RA +G +
Sbjct: 360 NGGSQKKKQVQSKKDKEYGVSRGVDFKNVACVLNFDLPTTSKSYVHRIGRTARAGKSGTA 419
Query: 298 VSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNA---------------VESLR 342
+S V P +K F + K D I + ++ Q A +E R
Sbjct: 420 ISFVVP--LKDFGKHKPSTCSTAKHDEKIFS--RIVKQQAKLGLELLPYSFDPKQIEGFR 475
Query: 343 YRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPAS 402
YR ED ++VT++AVRE+R ++L+ E+L SEKLK HFE NPK+L L+HDK+L
Sbjct: 476 YRMEDGFRAVTQVAVREARIKELKEELLASEKLKRHFEENPKELQSLRHDKELHPMRIQQ 535
Query: 403 HLRDVPDYLL-DAKTQEACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSF 454
HL+ VP+YLL +A + + K V K ++G +R+ KSDPLK+F
Sbjct: 536 HLKRVPEYLLPEAARKSSGKKVGFVPFHNPKKGRPHKKGKVSKRRNAKSDPLKNF 590
>gi|390600267|gb|EIN09662.1| ATP-dependent RNA helicase dbp9 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 634
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 178/467 (38%), Positives = 265/467 (56%), Gaps = 71/467 (15%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDL-RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
AL+ C+ +V +V +S S L + L P IV++TP + L+ +L+SK+
Sbjct: 117 ALLAYCENEV---IVSNVASGATSHLQKTLLEDRPQIVVSTPS---RVLT--LLKSKTVD 168
Query: 61 DS-LKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHN 117
S ++ LV+DEADL+ SYG+++D++ + +P+ Q LMSAT + DV+ LK L L N
Sbjct: 169 ISRIECLVIDEADLIFSYGHDEDIRQILGGGYLPKIFQSFLMSATMTEDVETLKGLALRN 228
Query: 118 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
P IL L E D N+ Q+ + CSE DK L +LKL+L++ K +IF NT+D
Sbjct: 229 PAILRLEEGEDQA-----ANLTQYSVRCSEVDKFLLTYVILKLKLIKGKCIIFVNTVDRC 283
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237
+RLKLFLE+F IKS +LN+ELP NSR H+++EFN G++DY+IATD++ + ++ SD+
Sbjct: 284 YRLKLFLEQFSIKSCVLNSELPLNSRYHVVQEFNQGVYDYIIATDESGGRGEEDSDDETD 343
Query: 238 VDSRKSKK----------------------------HPKAK----------LDSEFGVVR 259
+ +++ HPK D E+GV R
Sbjct: 344 AEVLSTQREDPEDGETSKRKPKKRKRTETSATPDSQHPKPSKRSKGGKVKSTDREYGVTR 403
Query: 260 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE-------------M 306
G+DF +V V+NF++P ++ Y HR+GRT RA TG S+S V P E
Sbjct: 404 GVDFIDVACVLNFDLPSSSRAYTHRVGRTARAGRTGMSLSYVVPKEEWGKNKIVGCLETA 463
Query: 307 KIFEEIKSFVGDDENEDSNIIAPFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL 365
K E+ + + ++ + I + +AQ VE+ RYR ED +SVT+ AV+E+R ++L
Sbjct: 464 KKDEKTFARIEKEQAARGSKIKEYKFDMAQ--VEAFRYRMEDALRSVTRAAVKEARIKEL 521
Query: 366 RNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+ EILNS+KLKAHFE NP DL+ L+HDK L H++ VP YLL
Sbjct: 522 KTEILNSDKLKAHFEDNPLDLEYLRHDKPLHPTRVQPHMKHVPKYLL 568
>gi|336368382|gb|EGN96725.1| hypothetical protein SERLA73DRAFT_161756 [Serpula lacrymans var.
lacrymans S7.3]
Length = 634
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 182/480 (37%), Positives = 264/480 (55%), Gaps = 83/480 (17%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS- 60
L+ C+ + L + S + RA LA PDIVI+TP + G LQSK+ S
Sbjct: 113 GLVAYCEKNIVL--ANVASGATSHLQRALLADKPDIVISTPS-----RTLGFLQSKALSL 165
Query: 61 DSLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
SL L++DEADL+LSYG+++D++ + +P+ Q LMSAT + DV+ LK L L NP
Sbjct: 166 ASLDSLIIDEADLILSYGHDEDIRQIFGGEYLPKVYQSFLMSATMTDDVETLKGLALRNP 225
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
IL L E D ++ Q+ + CSE DK L +LKL+L++ K ++F N +D +
Sbjct: 226 AILKLEEGEDE-----AASLTQYAVRCSEVDKFLLTYVILKLKLIKGKCILFVNDVDRCY 280
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK-EKDQSDEG-- 235
RLKLFLE+F IKS +LN+ELP NSR H ++EFN G++DY+IATD++ + E+D DE
Sbjct: 281 RLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIATDESGGRAEQDSDDEAVE 340
Query: 236 ------------------------------GHVDSR--------------------KSKK 245
G V S + +K
Sbjct: 341 DQQAQAEEDAVAVVPTQRESTDIENATEALGEVQSETGSKKRKRTEGSSTPGPSKSRKRK 400
Query: 246 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS-LVSPD 304
H K K D E+GV RG+DF +V V+NF++P ++ Y HR+GRT RA TG S+S +VS D
Sbjct: 401 HRKGK-DKEYGVTRGVDFVDVACVLNFDLPTSSRSYTHRVGRTARAGRTGMSLSFVVSED 459
Query: 305 EM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSV 352
+ K E + S + ++ + I + + VE+ RYR ED ++V
Sbjct: 460 QWGKNKAVGCLESAKKDELVFSKIEKEQAARGSKIKEYNFDMKQ-VEAFRYRMEDGLRAV 518
Query: 353 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
T+ A++E+R ++L+ EI+NSEKLKAHFE NP DL+ L+HDK L +H++ VP YLL
Sbjct: 519 TRSAIKEARVKELKTEIINSEKLKAHFEDNPLDLEYLRHDKPLHPTRVQAHMKHVPKYLL 578
>gi|395507002|ref|XP_003757817.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Sarcophilus
harrisii]
Length = 492
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 247/403 (61%), Gaps = 21/403 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++VV +++S + R L PD+V+ TP + LS + + + DSL++LV+DEAD
Sbjct: 53 VRVVDVSASEDFAFQRPLLMEKPDVVVGTPS---RVLSHLLQGNLNLRDSLELLVMDEAD 109
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 110 LLFSFGFEEELKTLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 165
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 166 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLLRGKSLLFVNTLERSYRLRLFLEQFSIPA 225
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK- 250
+LN ELP SR HI+ +FN G +D +IATD+ G V ++ + K +
Sbjct: 226 CVLNGELPLRSRCHIISQFNQGFYDCVIATDEEVL--------GAPVKGKRQGQGSKGER 277
Query: 251 -LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D+E GV RGIDF NV V+NF++P + Y+HR GRT RA N G +++ V P E
Sbjct: 278 SADTESGVARGIDFHNVTAVLNFDLPPSPEAYIHRAGRTARANNPGTALTFVLPTERPQL 337
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+EI+ +G + E ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 338 KEIEEALGGESAE--SMFLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 394
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
L+SEKLK +FE NP+DL LL+HD+ L HL VPDYL+
Sbjct: 395 LHSEKLKTYFEDNPRDLQLLRHDRPLHPAVVKPHLGHVPDYLV 437
>gi|340939028|gb|EGS19650.1| hypothetical protein CTHT_0041290 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 610
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 180/477 (37%), Positives = 275/477 (57%), Gaps = 48/477 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ +LT ++ + R+ LA PD+V++TP +++ L L+ LVLDEAD
Sbjct: 141 IHAAKLTENVSDAVQRSLLANVPDVVVSTPARAWHSVNSSALSLAK----LQFLVLDEAD 196
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D++ LS +P+G Q ++MSAT S ++D LK++ NP IL L E +DE
Sbjct: 197 LVLSYGYDEDMENLSRSLPKGVQTIMMSATLSPELDALKEIFCRNPTILDLKEEFGAEDE 256
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF++ C E DK L + KL+L++ LIF ID ++RLKLF E+F I+S
Sbjct: 257 ----KLTQFYVKCGEEDKWLIAYLIFKLQLIKGPCLIFVADIDRSYRLKLFFEQFSIRSC 312
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDD--------------TQTKEKDQSDEGGHV 238
+LN+ELP N+R+ I+EEFN G++D +IA+D+ + ++ +S +G
Sbjct: 313 VLNSELPINTRIKIIEEFNKGIYDIIIASDERPEAFGEEAAEEGEEEKEKNSKSKDGQ-- 370
Query: 239 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 298
+++KSKK K + D E+GV RGIDFKNV VINF+MP +A+ Y HRIGRT RA G ++
Sbjct: 371 ENQKSKKKRKYQKDEEYGVSRGIDFKNVAAVINFDMPTSASSYTHRIGRTARAGRAGIAL 430
Query: 299 SLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLAQNAVESLRYR 344
S V P + F + K + +D ++A P+ Q +E+ RYR
Sbjct: 431 SFVIPKDQ--FGKHKPTMVKSCEKDEKVLAKIIRQQAKLGRKLEPYNFNKQQ-MEAFRYR 487
Query: 345 AEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK-KPPASH 403
D ++VT+ A+RE+R ++LR E+L SE LK +FE NP +L L+HD +L K +H
Sbjct: 488 MTDALRAVTRAAIREARTRELRQELLRSEALKRYFEENPTELQHLRHDGELGKGMRHQAH 547
Query: 404 LRDVPDYLL-----DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKS-DPLKSF 454
L+ VPDYLL A T++ V + ++ + + R F+ DPLK+F
Sbjct: 548 LKHVPDYLLPKEGKKALTEQQIGFVPFKKLDGKDRRRRKGRPKGRTFKTGKDPLKTF 604
>gi|170087916|ref|XP_001875181.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650381|gb|EDR14622.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 620
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 175/436 (40%), Positives = 251/436 (57%), Gaps = 66/436 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL- 86
R L+ PDIVIATP + L+ + S SL LV+DEADL+LSYG++DD++++
Sbjct: 137 RTLLSDQPDIVIATPS---RALALLQSKVLS-LSSLDSLVIDEADLILSYGHDDDIRSIF 192
Query: 87 -SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
S +P+ Q LMSAT + DV+ LK L L NP IL L E DE N+ Q+ + C
Sbjct: 193 SSGFLPKVYQSFLMSATMTEDVEILKGLALRNPAILKLEE-----DEDEAANLSQYAVRC 247
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
SE DK L +LK++L++ K ++F N +D ++RLKLFLE+F IKS +LN+ELP NSR H
Sbjct: 248 SEVDKFLLTYVILKVKLIKGKCILFVNDVDRSYRLKLFLEQFSIKSCVLNSELPLNSRYH 307
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKS--KKHPKAKL------------ 251
+++EFN G++DY+IATD+ + + +DE S++S + P A
Sbjct: 308 VVQEFNKGVYDYIIATDEAGARAEYDTDEEVEQASQQSLDTEQPSATTDKGKRKRSNSSP 367
Query: 252 -----------------DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
D E+GV RG+DF +V V+NF++P ++ Y HR+GRT RA T
Sbjct: 368 APSARKTRKRKHRKAGGDKEYGVTRGVDFVDVACVLNFDLPTSSRSYTHRVGRTARAGRT 427
Query: 295 GASVSLVSP------------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQN 336
G S+S V P DEM +F +I+ ++ + I + +
Sbjct: 428 GMSLSFVVPRDKWGKNKVVGCLPSAEQDEM-VFSKIEK----EQGARGSKIKEYQFDMKQ 482
Query: 337 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 396
VE+ RYR ED +SVT+ A++E+R ++L+ EILNSEKLKAHFE NP DL+ L+HDK L
Sbjct: 483 -VEAFRYRMEDALRSVTRTAIKEARVKELKTEILNSEKLKAHFEDNPLDLEYLRHDKPLH 541
Query: 397 KKPPASHLRDVPDYLL 412
H++ VP YLL
Sbjct: 542 PTRIQPHMKHVPKYLL 557
>gi|430812630|emb|CCJ29978.1| unnamed protein product [Pneumocystis jirovecii]
Length = 582
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/442 (38%), Positives = 253/442 (57%), Gaps = 49/442 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++VV L +++ + + ++ P+IV+ TP + L+ L + +SL+ LV+DE D
Sbjct: 108 VRVVNLAANISDNAAKILVSDYPEIVVGTPSRILVHLNGSNLHVQ---ESLQHLVIDEFD 164
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY +DL + IP+ Q LMSAT + DVD+LKK+I +P IL L E
Sbjct: 165 LILSYGYLEDLNHIIRYIPKSAQMFLMSATLTEDVDELKKMICKDPIILKLDETNK---- 220
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
N+ Q+ + CSE +K L+ +LKL L++ K +IF N+ID +RLKLFLE+FGI+
Sbjct: 221 --NANLVQYSVKCSEDEKFLFAFVILKLRLIKGKIIIFVNSIDRCYRLKLFLEQFGIRCC 278
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEK--------------------DQS 232
ILN+ELP NSRLHI+EEFN +++ ++ATD+ +K S
Sbjct: 279 ILNSELPVNSRLHIIEEFNKNIYNIILATDENDLLKKPDSASSIKGRVIFFLCIYLISNS 338
Query: 233 DEGGHVDSRKS-------KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
+E + D+ ++ KK K D+E+GV RGIDFKNV V+NF++P Y+HR
Sbjct: 339 EENINCDTTQAVLKNNSSKKQKKIHRDNEYGVSRGIDFKNVTCVLNFDLPTTVKSYIHRS 398
Query: 286 GRTGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLL 333
GRT RA G +S + P+ + K E I + D+ I P+
Sbjct: 399 GRTARADKDGMVMSFIVPENLWGKHKSTILESAKYDESIFQAIEKDQEAKGATIKPYSFN 458
Query: 334 AQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDK 393
++ V + RYR ED +++T+ +RE+R ++LR EIL+S+KLK +F+ NP DL+ L+HDK
Sbjct: 459 MEH-VNAFRYRMEDALRAITRTVIREAREKELRMEILSSKKLKEYFDENPNDLEQLRHDK 517
Query: 394 DLSKKPPASHLRDVPDYLLDAK 415
+L HL+ +PDYLL K
Sbjct: 518 ELHPARIQPHLKHIPDYLLPKK 539
>gi|392565268|gb|EIW58445.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 649
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 265/480 (55%), Gaps = 81/480 (16%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS- 60
+L+ C+ +V V ++S + L+ PD+VIATP + +LQ+K+ S
Sbjct: 113 SLLTYCEDEVS--VANVSSGTTTHLQKTLLSDNPDVVIATPS-----RALALLQAKTMSL 165
Query: 61 DSLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
D+L+ LV+DEADL+LSYG+++D++ + +P+ Q LMSAT + DV+ LK L L +P
Sbjct: 166 DALESLVIDEADLILSYGHDEDVRQIFSGGFLPKVFQSFLMSATMTEDVEALKGLALRSP 225
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
IL L E DE N+ Q+ + CSE DK L +LKL L++ K ++F N +D +
Sbjct: 226 VILKLEE-----DEDEAANLTQYSVRCSEVDKFLLTYVILKLRLIKGKCILFVNDVDRCY 280
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD---------------- 222
RLKLFLE+F IKS +LN+ELP NSR H ++EFN G++DY+IA+D
Sbjct: 281 RLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIASDESTGRGEQDSDDEQEE 340
Query: 223 -----------DTQ-----------------------TKEKDQSDEGGHVDSRKSK---- 244
DTQ ++K S+ S KSK
Sbjct: 341 DAAEENEDDFMDTQREAEDAAVAAPADPAPEDAPKSLKRKKATSEPTPEPSSSKSKANKR 400
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
K K D+E+GV RG+DF +V VINF++P ++ Y HR+GRT RA TG ++S V P
Sbjct: 401 KRRKGASDAEYGVSRGVDFVDVSCVINFDLPTSSRAYTHRVGRTARAGRTGMALSFVVPK 460
Query: 305 EM----KIFEEIKSFVGDDE---NEDSNIIAPFPLLAQ-----NAVESLRYRAEDVAKSV 352
E K+ ++S + D+E + A L + VE+ RYR ED ++V
Sbjct: 461 EQWGRNKVVGGVESALRDEEIFARIEREQAARGSQLKEYQFDMKQVEAFRYRMEDALRAV 520
Query: 353 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
T+ A++E+R ++L+ EILNS+KLKAHFE NP DL+ L+HDK L SH++ +P YLL
Sbjct: 521 TRSAIKEARIKELKTEILNSDKLKAHFEDNPLDLEYLRHDKPLHPTRVQSHMKHIPKYLL 580
>gi|350405187|ref|XP_003487352.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Bombus
impatiens]
Length = 550
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 243/403 (60%), Gaps = 23/403 (5%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++KV+ ++ + S + LA PDIV+ TP + + L ++ K SL+ L++DEA
Sbjct: 120 EVKVIDVSPQLDLSAQKPLLAEKPDIVVGTPSRLLQHLKANNMKLKQ---SLETLIIDEA 176
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+ S+GYED++K+L +P Q L SAT S DV LKKL+L NP IL L E
Sbjct: 177 DLVFSFGYEDEIKSLLNYLPIVYQAALASATLSEDVVTLKKLVLRNPAILKLEE-----P 231
Query: 132 EVIP-KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ P + + ++ E DK + LLKL LV+ K +IF NT+D ++LKLFLE+FGI
Sbjct: 232 PLAPLSQLSHYSLAAEENDKAAILYALLKLHLVRGKTIIFVNTVDRCYKLKLFLEQFGIP 291
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ +LN+ELP SR + +FN+G +D +IA+D+ +S E H+ K + K
Sbjct: 292 TCVLNSELPAVSRCRAVTQFNSGTYDIIIASDE-------KSLEEPHIIKVKRGRRKK-- 342
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
D E GV RGIDF+ V VINF+ PQ+ Y+HR GRT R N G ++S VS E + E
Sbjct: 343 -DKESGVARGIDFQFVSNVINFDFPQDVNSYIHRAGRTARGKNQGTALSFVSIRERPLLE 401
Query: 311 EIKSFVGDDENEDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+++S + N D+ F L VE RYRA+D K+VT+IAVRE+R ++++ E+
Sbjct: 402 QVESELKHCYNRDTLFKTYQFKL---EEVEGFRYRAKDAWKAVTRIAVREARLKEIKQEV 458
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
LN +KLK++FE NPKDL L+ DK L SHL+DVPDY++
Sbjct: 459 LNCQKLKSYFEDNPKDLQSLRQDKALHTVKLQSHLKDVPDYIV 501
>gi|219112795|ref|XP_002178149.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411034|gb|EEC50963.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 512
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 169/387 (43%), Positives = 252/387 (65%), Gaps = 15/387 (3%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
A L P++++ATP + + +G+L KS S++ LV+DEADL+LS+GY D+ +
Sbjct: 137 AMLRDQPNVLVATPAGLLTQIRSGLLDLKS---SVETLVVDEADLVLSFGYAKDIAEIVK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
+PR CQ LMSAT S ++D LKK++L++P +L L + D K +++QF+++ +R
Sbjct: 194 SLPRICQGFLMSATLSPELDSLKKIVLNSPVVLKLEQ--DEKTSTGVGHLKQFYVALPKR 251
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
DK L + LKL L++ K L F N+ D +RLKLFLE+F I+SA+LNAELP SRL+I+E
Sbjct: 252 DKNLVVYVFLKLGLLKGKGLFFVNSTDAGYRLKLFLEQFSIRSAVLNAELPFRSRLNIIE 311
Query: 209 EFNAGLFDYLIATD-DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+FN G FDYLIATD T ++K+ SD+ + +K K K DS++GV RG+DF+NV
Sbjct: 312 QFNVGNFDYLIATDASTDAEQKEDSDDEHEANVKKLKTR---KADSQYGVSRGLDFRNVS 368
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 327
V+N + P N+ Y HR+GRT R G ++S V E++ ++ + + +++ S +
Sbjct: 369 FVVNVDFPLNSRSYSHRVGRTARGGAKGVALSFV---ELESKQQHDTLLAVQDDQPSTPL 425
Query: 328 APFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 386
P PL + +E RYR EDV ++VT++AVRE+RA +L+ EILNSE+L+AHFE NP DL
Sbjct: 426 -PVPLDFDLHEIEGFRYRCEDVQRAVTRMAVRETRAAELKAEILNSERLQAHFEDNPADL 484
Query: 387 DLLKHDKDLSKKPPAS-HLRDVPDYLL 412
LL+HD+ + HL+ VP YLL
Sbjct: 485 QLLRHDRVATHISRVQDHLKHVPKYLL 511
>gi|255727326|ref|XP_002548589.1| hypothetical protein CTRG_02886 [Candida tropicalis MYA-3404]
gi|240134513|gb|EER34068.1| hypothetical protein CTRG_02886 [Candida tropicalis MYA-3404]
Length = 605
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 174/465 (37%), Positives = 264/465 (56%), Gaps = 34/465 (7%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ V+ L+S+ L + L PDI+I+TP + + L + ++K L +DE
Sbjct: 151 KINVLNLSSNYSDQVLNSLLVNKPDIIISTPAKLIQILEKN--EKNVDLSTVKNLTIDEV 208
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+LS+GY DDLK L +P + Q LMSAT + D++ LKK P IL L +
Sbjct: 209 DLVLSFGYMDDLKKLENYLPIKKNLQTFLMSATVNDDLEDLKKRYCTKPAILKLNDDAAN 268
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+++++ Q++ +E DK L + KL L++ K ++F N ID +RLKLFLE+FGI
Sbjct: 269 QNKLV-----QYYAKTTEFDKFLLAYVIFKLNLIKGKTIVFVNNIDRGYRLKLFLEQFGI 323
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ ILN+ELP NSRLHI+EEFN ++ LIATD+T E ++ + +D ++ P A
Sbjct: 324 RCCILNSELPINSRLHIVEEFNKNVYHLLIATDETN--ELNEEKDEDDIDEDQADGEPAA 381
Query: 250 KL--------DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
K D E+GV RG+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S V
Sbjct: 382 KKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALSFV 441
Query: 302 SP------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 349
P K E++ + ++++ I P+ N VE RYRA+D
Sbjct: 442 LPLSEFGKHKTATLSTAKKDEKVLRRIVKQQSKNGFEIKPYQ-FDMNQVEGFRYRADDAF 500
Query: 350 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 409
++VT+ ++RE+R ++L+NE++NSEKLK FE NP+DL L+HDK+L + L++VP
Sbjct: 501 RAVTQTSIREARVKELKNELINSEKLKRFFEENPQDLASLRHDKELHPTRIQTQLKNVPQ 560
Query: 410 YLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
YLL + K + + R+G RK K DPLKSF
Sbjct: 561 YLLPESARSDVKNIGFVPFHKNKVHKRNRKGKGRK--KVDPLKSF 603
>gi|367005897|ref|XP_003687680.1| hypothetical protein TPHA_0K01120 [Tetrapisispora phaffii CBS 4417]
gi|357525985|emb|CCE65246.1| hypothetical protein TPHA_0K01120 [Tetrapisispora phaffii CBS 4417]
Length = 604
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 180/485 (37%), Positives = 267/485 (55%), Gaps = 52/485 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
++ + + + + L + L P+IV++TP + L T V S S D LK LV+DE
Sbjct: 128 IRSLNIAGDISPAVLTSLLLEKPEIVVSTPSRLLGLLETNV---DSLSLDDLKFLVIDEV 184
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+L++GY++DL +S +P + Q LMSAT + D+ +LKK +P I+ +
Sbjct: 185 DLVLTFGYKEDLTKISQFLPIKKNLQTFLMSATLNDDIQELKKDFCRSPAIIKFNDDEIT 244
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
KD+ + Q+++ SE DK L + KL L++ K LIF N ID +RLKL LE+FGI
Sbjct: 245 KDQT---KLIQYYVKTSEFDKFLLCYVIFKLGLIKGKTLIFVNNIDRGYRLKLVLEQFGI 301
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK------- 242
K+ ILN+ELP NSR HI+++FN ++ LIATDDT+ +++ E VD K
Sbjct: 302 KACILNSELPANSRHHIVDQFNKNVYRLLIATDDTEYIKEEDEQEEIQVDETKKDSSEET 361
Query: 243 ----------------SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIG 286
KK + D E+GV RG+DF+NV V+NF++P A YVHR+G
Sbjct: 362 TENKEEEPNTSDNKNNKKKTITIQKDKEYGVSRGVDFQNVACVLNFDLPTTAKSYVHRVG 421
Query: 287 RTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPL 332
RT RA +G ++S V P +K + K + D I++ P+
Sbjct: 422 RTARAGKSGTAISFVVP--LKEVGKHKPSMSQTSKRDEKILSRIMKQQGKLGLELQPYSF 479
Query: 333 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHD 392
++ VE RYR ED ++VT++A+RE+R ++L+ E+L SEKLK HFE NP++L L+HD
Sbjct: 480 DSKQ-VEGFRYRLEDGFRAVTQVAIREARIKELKEELLASEKLKRHFEENPQELKSLRHD 538
Query: 393 KDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSR-RQGPRRKFR--KSD 449
K+L HL+ VP+YLL ++ K V KN R +G + R KSD
Sbjct: 539 KELYPSRIQQHLKRVPEYLLPEAARKGDKKVGFVPFHNPKKNRHRVSKGKKNNKRGSKSD 598
Query: 450 PLKSF 454
PLK+F
Sbjct: 599 PLKNF 603
>gi|332239444|ref|XP_003268913.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Nomascus leucogenys]
Length = 547
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 175/445 (39%), Positives = 254/445 (57%), Gaps = 27/445 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT+D ++RL+LFLE+F I S
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLDRSYRLRLFLEQFSIPS 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G + ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPIKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + S I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--SPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPP------ALRGLVRPH 508
Query: 430 MGNKNSSRRQGPRRKFRKSDPLKSF 454
K S ++ + +PL+SF
Sbjct: 509 KKRKKLSSSCRKAKRVKSQNPLRSF 533
>gi|3850123|emb|CAA21924.1| dead box helicase [Candida albicans]
Length = 574
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 184/467 (39%), Positives = 266/467 (56%), Gaps = 33/467 (7%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ V+ L+SS L + L P+I+I+TP + + L + ++K L +DE
Sbjct: 115 KINVLNLSSSYSDQVLNSLLVNKPEIIISTPAKLIQILEKN--EKNIDLSTVKNLTIDEV 172
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+LS+GY DDLK L + +P + Q LMSAT + D+D LK+ P IL L E
Sbjct: 173 DLVLSFGYLDDLKKLESYLPVKKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNE---- 228
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
D N+ Q++ +E DK L + KL L++ K + F N ID +RLKLFLE+FGI
Sbjct: 229 -DSANQNNLVQYYAKTTEFDKFLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGI 287
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD-EGGHVDSR------- 241
+ ILN+ELP NSRLHI+EEFN ++ LIATD+T ++Q D E G D++
Sbjct: 288 RCCILNSELPINSRLHIVEEFNKNVYHLLIATDETNELNEEQDDNEDGDEDTKDKGNAET 347
Query: 242 --KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
K K K K D E+GV RG+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S
Sbjct: 348 KPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALS 407
Query: 300 LVSP------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 347
V P K E++ + ++++ I P+ N VE RYRA+D
Sbjct: 408 FVLPLSEFGKHKTASLASAKKDEKVLGRIVKQQSKNGFEIKPYQ-FDMNQVEGFRYRADD 466
Query: 348 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 407
++VT+ AVRE+R ++L+NE++NSEKLK FE NP+DL L+HDK+L S L++V
Sbjct: 467 AFRAVTQTAVREARVKELKNELINSEKLKRFFEENPQDLASLRHDKELHPARIQSQLKNV 526
Query: 408 PDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
P YLL ++ K + NK R+G + +K DPLKSF
Sbjct: 527 PQYLLPESARQDVKNIGFV-PFHKNKIHKHRKGKGKGRKKVDPLKSF 572
>gi|50424613|ref|XP_460896.1| DEHA2F12232p [Debaryomyces hansenii CBS767]
gi|74688654|sp|Q6BLM5.1|DBP9_DEBHA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49656565|emb|CAG89246.1| DEHA2F12232p [Debaryomyces hansenii CBS767]
Length = 586
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 170/478 (35%), Positives = 272/478 (56%), Gaps = 36/478 (7%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L+ C +++L + ++S++ + + L P+I+++TP + + L V + +
Sbjct: 116 LLIFCNSKIRL--INISSNLSDQVINSLLINKPEIIVSTPAKLIQILEKNVNSNLINLST 173
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYI 120
+K L +DE DL+LSYGY +DL+ L + +P + Q LMSAT + D++ +K P I
Sbjct: 174 VKNLTIDEVDLVLSYGYLEDLQKLESYLPIKKNLQTFLMSATINDDLNDIKSKFCSRPAI 233
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
L L + ++ N+ Q++ +E DK L + KL L++ K L+F N ID +RL
Sbjct: 234 LKLND-----EDSNQNNLVQYYAKTTEFDKFLLTYVIFKLNLIKGKTLVFVNNIDRGYRL 288
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ----------TKEKD 230
KLFLE+FG++ ILN+ELP NSRL+I+E++N +++ LIATD+T E+
Sbjct: 289 KLFLEQFGVRCCILNSELPINSRLNIVEQYNKNVYNLLIATDETNDFTIQEDEKDEGEEI 348
Query: 231 QSDEGGHVDSRKSK--KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
+ ++ D + SK K P K D E+GV RG+DF+NV V+NF++P ++ Y+HR+GRT
Sbjct: 349 EENKNEENDGKTSKNTKKPNQKKDKEYGVSRGVDFRNVACVLNFDLPTSSKSYIHRVGRT 408
Query: 289 GRAYNTGASVSLVSP------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQN 336
RA +G ++S V P K E++ + ++ + I P+
Sbjct: 409 ARAGKSGMALSFVLPLNEFGKHKTASLSTAKKDEKVLRRIVRQQSNNGFEIKPYQ-FDMK 467
Query: 337 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 396
VE RYRAED ++VT+ AVRE+R ++L+NE++NS+KLK FE NP+DL L+HDK+L
Sbjct: 468 QVEGFRYRAEDAFRAVTQSAVREARIKELKNELVNSDKLKRFFEENPQDLASLRHDKELH 527
Query: 397 KKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
+HL+ VP+YLL + K + + +R++ P RK DPLKSF
Sbjct: 528 PTRVQTHLKRVPEYLLPESARADHKKIGFVPFHKNKVHKNRKRKPSG--RKPDPLKSF 583
>gi|307199009|gb|EFN79733.1| Probable ATP-dependent RNA helicase DDX56 [Harpegnathos saltator]
Length = 547
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 175/422 (41%), Positives = 249/422 (59%), Gaps = 35/422 (8%)
Query: 5 ELCKGQVQLKVVQLTSSM----------PASDLRAA---LAGPPDIVIATPGCMPKCLST 51
ELCK Q+Q +V LT P +DL A L PDIV+ATPG + + L
Sbjct: 96 ELCK-QIQEVIVNLTVKCSREVRVVDISPQTDLNAQKPLLVEMPDIVVATPGRLLQHLKA 154
Query: 52 GVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK 111
L K SL+ L++DEADL+ S+GYEDD+KA+ A +P Q +L SAT S DV LK
Sbjct: 155 KNLVLKR---SLETLIIDEADLIFSFGYEDDMKAVLAYLPTVYQAVLASATLSEDVQTLK 211
Query: 112 KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFT 171
KL+LHNP IL L E P + + ++ E DK + LLKL L++ K++IF
Sbjct: 212 KLVLHNPAILKLEEPPLAP----PTQLAHYTLAAEENDKAAILYALLKLHLIRGKSIIFV 267
Query: 172 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ 231
NT+D ++LKLFLE+FGI + +LN+ELP SR + +FN+G +D +IA+D+ +E
Sbjct: 268 NTVDRCYKLKLFLEQFGIPTCVLNSELPATSRCRAVTQFNSGTYDVIIASDEKALEEP-- 325
Query: 232 SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 291
HV ++K K K D E GV RGIDF+ V +INF+ P + Y+HR GRT R
Sbjct: 326 -----HVVNKKKG---KRKKDKESGVARGIDFQFVSNIINFDFPLDVDSYIHRAGRTARG 377
Query: 292 YNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI-IAPFPLLAQNAVESLRYRAEDVAK 350
N G ++S V+ E + E ++ + N +S F L VE RYRA+D K
Sbjct: 378 KNQGTALSFVAIRERPLMENVEEQLKHTYNRNSLFKTYQFKL---EEVEGFRYRAKDAWK 434
Query: 351 SVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDY 410
+VT+IAVRE+R ++++ E++N +KLK++FE NP+DL L+ DK L HL+DVP+Y
Sbjct: 435 AVTRIAVREARLKEIKQEVMNCQKLKSYFEDNPRDLQSLRQDKALHTVKLQPHLKDVPEY 494
Query: 411 LL 412
++
Sbjct: 495 IV 496
>gi|453085376|gb|EMF13419.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 634
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 182/519 (35%), Positives = 282/519 (54%), Gaps = 76/519 (14%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 65
C +V K +T S RA LA PDIV+ATP + +++ ++ + LK
Sbjct: 133 FCAAEV--KCENITRKEDPSVTRARLAELPDIVVATPARAIQWVNSETMKL----EGLKH 186
Query: 66 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125
L++DEADL+LSY EDDL+AL+ ++P G Q L+MSAT ++VD L L + PE
Sbjct: 187 LIIDEADLVLSYDGEDDLRALANLLPEGVQKLMMSATLRTEVDTLTALFFAED---SKPE 243
Query: 126 VGDVKDEVIPK--NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
+ D+ E + + Q+ + +E +K L I + KL+L++ K ++F ID +R+KLF
Sbjct: 244 ILDLSQEEAKEKATLAQYTVRTAEDEKFLLIYAIFKLQLIKGKVIVFVADIDRGYRVKLF 303
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT---KEKDQSDEGGHV-- 238
LE+FGI+S +LNAELP NSRLH++EEFN G++D +IA D+++ ++ +S E V
Sbjct: 304 LEQFGIRSCVLNAELPVNSRLHVVEEFNKGVYDIIIAADESEVVGNEDGKKSKESERVAE 363
Query: 239 --------------------------DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
++R KK +++ D E+GV RGIDF++V V+NF
Sbjct: 364 EDEDEDEVEPDGAEAETEPVTTENSSNTRPVKKQRRSRKDREYGVSRGIDFRHVTCVLNF 423
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPL 332
++P N Y HRIGRT RA +G ++S P + + + K + D ++A +
Sbjct: 424 DLPTNNKSYTHRIGRTARAGQSGMALSFYVPKSL--YRKHKPTSIEQCEHDEEVLA--KI 479
Query: 333 LAQNA---------------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKA 377
+A+ A ++ RYR D +SVT+IAVRE+R +++RNE++ SEKLK
Sbjct: 480 VAKQADQGSEVKEWGIDWTKLDGFRYRLVDALRSVTRIAVREARTKEIRNELVKSEKLKR 539
Query: 378 HFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL----DAKTQEACKMVKLAR---AAM 430
HFE NP+DL L+HD + +HL+ VPDYLL A + V + R +
Sbjct: 540 HFEENPEDLKHLRHDTESHAVRAQAHLKHVPDYLLPQGGKAAVAKDVGYVGMKRDKANGI 599
Query: 431 GNKNSSRRQGPRRKFRKS---DPLKSFSAEPTKRAGKGR 466
N+ ++ + R + K DPLKS + + G+GR
Sbjct: 600 RNRRATNKAKGRGRLAKGKGLDPLKSLNVK-----GRGR 633
>gi|297288380|ref|XP_001089984.2| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Macaca mulatta]
Length = 550
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 175/445 (39%), Positives = 257/445 (57%), Gaps = 28/445 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 117 VRVANVSAAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 173
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 174 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 229
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 230 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 289
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 290 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 341
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 342 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHL 401
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 402 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 458
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + + K +
Sbjct: 459 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPHKKRK-- 516
Query: 430 MGNKNSSRRQGPRRKFRKSDPLKSF 454
K SS R+ R+ + +PL+SF
Sbjct: 517 ---KLSSCRKA--RRVKSQNPLRSF 536
>gi|348560130|ref|XP_003465867.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Cavia
porcellus]
Length = 547
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 176/449 (39%), Positives = 255/449 (56%), Gaps = 35/449 (7%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + L L+ DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDTASQRAMLMEKPDVVVGTPSRILNHLQQDNLK---LRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+EDDLK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEDDLKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F N+++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNSLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDSDVL--------GAPAKGKQRGRKPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
I+ + DE E S ++ P+ + +E RYR +D +SVTK A+RE+R ++++ E+
Sbjct: 398 RRIEELL-TDEGEASALL-PYQFHMEE-IEGFRYRCKDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPAL----------RGL 504
Query: 430 MGNKNSSRRQGPRRKFRK----SDPLKSF 454
+ ++ P RK +K +PL+SF
Sbjct: 505 VRTHRKRKKLAPGRKAKKVKKTQNPLRSF 533
>gi|340726173|ref|XP_003401436.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Bombus
terrestris]
Length = 550
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 176/449 (39%), Positives = 262/449 (58%), Gaps = 30/449 (6%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++K + ++ + S + LA PDIV+ TP + + L ++ K SL+ L++DEA
Sbjct: 120 EVKAIDVSPQLDLSAQKPLLAEKPDIVVGTPSRLLQHLKANNMKLKQ---SLETLIIDEA 176
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+ S+GYED++K+L +P Q L SAT S DV LKKL+L NP IL L E
Sbjct: 177 DLVFSFGYEDEIKSLLNYLPIVYQAALASATLSEDVVTLKKLVLRNPAILKLEE-----P 231
Query: 132 EVIP-KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ P + + ++ E DK + LLKL LV+ K +IF NT+D ++LKLFLE+FGI
Sbjct: 232 PLAPLSQLSHYSLAAEENDKAAILYALLKLHLVRGKTIIFVNTVDRCYKLKLFLEQFGIP 291
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ +LN+ELP SR + +FN+G +D +IA+D ++S E H+ K + K
Sbjct: 292 TCVLNSELPAVSRCRAVTQFNSGTYDIIIASD-------EKSLEEPHIMKVKRGRRKK-- 342
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
D E GV RGIDF+ V VINF+ PQ+ Y+HR GRT R N G ++S VS E + E
Sbjct: 343 -DKESGVARGIDFQFVSNVINFDFPQDVNSYIHRAGRTARGKNQGTALSFVSIRERPLLE 401
Query: 311 EIKSFVGDDENEDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+++S + N D+ F L VE RYRA+D K+VT+IAVRE+R ++++ E+
Sbjct: 402 QVESELKHCYNRDTLFKTYQFKL---EEVEGFRYRAKDAWKAVTRIAVREARLKEIKQEV 458
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
LN +KLK++FE NPKDL L+ DK L SHL+DVP+Y++ + ++V + R
Sbjct: 459 LNCQKLKSYFEDNPKDLQSLRQDKALHTVKLQSHLKDVPEYIVPPTLK---RLVGINRKR 515
Query: 430 MGNKN--SSRRQGPRRKF--RKSDPLKSF 454
N+ +S+ + K+ R S+PL S
Sbjct: 516 KFNREAAASKPTATQLKYQARASNPLVSL 544
>gi|402863582|ref|XP_003896086.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Papio anubis]
Length = 546
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 176/445 (39%), Positives = 257/445 (57%), Gaps = 28/445 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPPEQSHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + + K +
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPHKKRK-- 512
Query: 430 MGNKNSSRRQGPRRKFRKSDPLKSF 454
K SS R+ RK + +PL+SF
Sbjct: 513 ---KLSSCRKA--RKAKSQNPLRSF 532
>gi|68478403|ref|XP_716703.1| hypothetical protein CaO19.3393 [Candida albicans SC5314]
gi|68478522|ref|XP_716643.1| hypothetical protein CaO19.10896 [Candida albicans SC5314]
gi|74679968|sp|Q5A4P9.1|DBP9_CANAL RecName: Full=ATP-dependent RNA helicase DBP9
gi|46438316|gb|EAK97648.1| hypothetical protein CaO19.10896 [Candida albicans SC5314]
gi|46438381|gb|EAK97712.1| hypothetical protein CaO19.3393 [Candida albicans SC5314]
Length = 574
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 183/467 (39%), Positives = 265/467 (56%), Gaps = 33/467 (7%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ V+ L+SS L + L P+I+I+TP + + L + ++K L +DE
Sbjct: 115 KINVLNLSSSYSDQVLNSLLVNKPEIIISTPAKLIQILEKN--EKNIDLSTVKNLTIDEV 172
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+LS+GY DDLK L + +P + Q LMSAT + D+D LK+ P IL L E
Sbjct: 173 DLVLSFGYLDDLKKLESYLPVKKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNE---- 228
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
D N+ Q++ +E DK L + KL L++ K + F N ID +RLKLFLE+FGI
Sbjct: 229 -DSANQNNLVQYYAKTTEFDKFLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGI 287
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD-EGGHVDSR------- 241
+ ILN+ELP NSRLHI+EEFN ++ LIATD+T ++Q D E G D++
Sbjct: 288 RCCILNSELPINSRLHIVEEFNKNVYHLLIATDETNELNEEQDDNEDGDEDTKDKGNAET 347
Query: 242 --KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
K K K K D E+GV RG+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S
Sbjct: 348 KPKKSKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALS 407
Query: 300 LVSP------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 347
V P K E++ + ++++ I P+ VE RYRA+D
Sbjct: 408 FVLPLSEFGKHKTASLASAKKDEKVLGRIVKQQSKNGFEIKPYQ-FDMKQVEGFRYRADD 466
Query: 348 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 407
++VT+ AVRE+R ++L+NE++NSEKLK FE NP+DL L+HDK+L S L++V
Sbjct: 467 AFRAVTQTAVREARVKELKNELINSEKLKRFFEENPQDLASLRHDKELHPARIQSQLKNV 526
Query: 408 PDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
P YLL ++ K + NK R+G + +K DPLKSF
Sbjct: 527 PQYLLPESARQDVKNIGFV-PFHKNKIHKHRKGKGKGRKKVDPLKSF 572
>gi|380813950|gb|AFE78849.1| putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
gi|383419375|gb|AFH32901.1| putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
gi|384947812|gb|AFI37511.1| putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
Length = 546
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 175/445 (39%), Positives = 257/445 (57%), Gaps = 28/445 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + + K +
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPHKKRK-- 512
Query: 430 MGNKNSSRRQGPRRKFRKSDPLKSF 454
K SS R+ R+ + +PL+SF
Sbjct: 513 ---KLSSCRKA--RRVKSQNPLRSF 532
>gi|149704807|ref|XP_001495871.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Equus
caballus]
Length = 546
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 164/403 (40%), Positives = 242/403 (60%), Gaps = 21/403 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L+ S DSL++LV+DEAD
Sbjct: 113 IRVANVSAAEDSASQRAVLMEKPDVVVGTPS---RILNHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P+ +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPEQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ K PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRQGKGPKGDR 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ +G + + ++ P+ + +E RYR D +SVTK ++RE+R ++++ E+
Sbjct: 398 GKIEELLGGEST--APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQSIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLV 497
>gi|410951930|ref|XP_003982643.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Felis catus]
Length = 547
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 245/403 (60%), Gaps = 21/403 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PDIV+ TP + L+ S + DSL++LV+DEAD
Sbjct: 113 IRVADVSAAEDSASQRAVLMEKPDIVVGTPS---RILNHLQQDSLTLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P ++QF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+FGI +
Sbjct: 226 PGPDQLKQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFGIPA 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ K PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDTEVL--------GAPVKGKRRGKGPKGDR 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPAEQSHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+ I+ + ENE + ++ P+ + +E+ RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 DTIEELLC-GENE-APVLLPYQFRMEE-IEAFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
L+SE+LK +FE NP+DL LL+HD L HL VPDYL+
Sbjct: 455 LHSERLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLV 497
>gi|384495993|gb|EIE86484.1| hypothetical protein RO3G_11195 [Rhizopus delemar RA 99-880]
Length = 454
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 163/416 (39%), Positives = 247/416 (59%), Gaps = 38/416 (9%)
Query: 22 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYED 81
M A R L PDI+++TP K L+ Q+ S+SL+ LV+DEADL+LS+GYED
Sbjct: 1 MSAQLQRPLLLEKPDIIVSTPS---KTLTHLEAQNMVLSESLENLVIDEADLVLSFGYED 57
Query: 82 DLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 141
D++ + + +P+ Q LMSAT + ++++L L+L P IL L D ++E ++ Q+
Sbjct: 58 DVRKILSFLPKIYQSFLMSATFTKEIEELTALVLRKPAILALE---DSEEEA--SSLTQY 112
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ CSE +K L+ ++KL L++ K L+F N ID ++LKLFLE+F IKS +LN+ELP N
Sbjct: 113 VVQCSEFEKFLFTFVIIKLRLIKGKILLFVNDIDRCYKLKLFLEQFSIKSCVLNSELPLN 172
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTK---------EKDQSDEGGHVDSRKSKKHPKAKLD 252
SR HI+EEFN G++DYLIATD+++ K E+++ + ++K K K K D
Sbjct: 173 SRYHIVEEFNRGIYDYLIATDESELKGEQDSEDEDEEEKKEGEEEEKAKKKKNKQKVKKD 232
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------ 306
E+GV RG+DF+ V V+NF+ P ++ Y HRIGRT R N G S+S V E
Sbjct: 233 KEYGVSRGVDFQGVAAVVNFDFPTSSKAYTHRIGRTARGGNQGMSLSFVVTKEFVEDNKE 292
Query: 307 ----------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIA 356
++E +K + + + +N V +YR +D K+V K+A
Sbjct: 293 VSRGRGVHDEAVYERVKK----QQEAKKAELKSYSFEKKN-VAGFKYRVQDALKAVNKVA 347
Query: 357 VRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
++E+R ++++ EILNSEKLKAHFE PKDL+ L+HD L H++ +P YL+
Sbjct: 348 IKEARIKEIKREILNSEKLKAHFEDKPKDLEFLRHDVALQPAKVQEHMKHIPSYLM 403
>gi|169849877|ref|XP_001831637.1| ATP-dependent RNA helicase dbp9 [Coprinopsis cinerea okayama7#130]
gi|116507275|gb|EAU90170.1| ATP-dependent RNA helicase dbp9 [Coprinopsis cinerea okayama7#130]
Length = 633
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 184/476 (38%), Positives = 262/476 (55%), Gaps = 83/476 (17%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-D 61
L+ C +V L TS + + LA PDI+IATP + LS ++QSK+ S
Sbjct: 114 LLVYCDQEVTL--CNATSGSASHLQKQLLADQPDILIATPS---RTLS--LVQSKALSLG 166
Query: 62 SLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPY 119
S+ LV+DEADL+LSYG++DD++ L + P+ Q LMSAT + DV+ LK L L NP
Sbjct: 167 SIDSLVIDEADLILSYGHDDDVRQLFKGSHFPKVYQSFLMSATMTEDVEMLKGLTLRNPA 226
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
IL L E +DE + Q+ + CSE DK L +LKL+L++ K +IF N +D ++R
Sbjct: 227 ILKLEEG---EDEA--ALLTQYAVRCSEVDKFLLTYVILKLKLIKGKCIIFVNDVDRSYR 281
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD---------------- 223
LKLFLE+F IKS +LN+ELP NSR H ++EFN G++DY+IATD+
Sbjct: 282 LKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIATDEAGVQDEYDTEDEDEGD 341
Query: 224 ------TQT------------------KEKDQSDEGGHVDSRKSKKHPKAKL------DS 253
T T K K+Q + VDS + K + D
Sbjct: 342 GEGEEFTSTQRGEADENEASEEEESPKKSKNQGKKRKRVDSPEPSSKSKKRKQSKHVSDK 401
Query: 254 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------- 306
E+GV RG+DF +V V+NF++P ++ Y HR+GRT RA TG S+S V P E+
Sbjct: 402 EYGVTRGVDFVDVACVLNFDLPTSSRSYTHRVGRTARAGRTGMSLSFVVPRELWGKDKVV 461
Query: 307 ----------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIA 356
K+F+ I+ ++ + I + VE+ RYR +D +SVT+ A
Sbjct: 462 GGLPSAEHDEKVFKRIEK----EQGARGSTIKEYN-FDMKQVEAFRYRMQDALRSVTRAA 516
Query: 357 VRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+RE+R ++L+ EILNS+KLKAHFE NP DL+ L+HDK L H++ +P YLL
Sbjct: 517 IREARVKELKTEILNSDKLKAHFEDNPLDLEYLRHDKPLHPARVQPHMKHIPKYLL 572
>gi|307171935|gb|EFN63564.1| Probable ATP-dependent RNA helicase DDX56 [Camponotus floridanus]
Length = 546
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 181/466 (38%), Positives = 265/466 (56%), Gaps = 30/466 (6%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAA---LAGPPDIVIATPGCMPKCLSTGVLQSK 57
M L C +V +V+ ++ P +DL A L PDI++ TP + + L G + K
Sbjct: 106 MCLTTKCYREV--RVIDIS---PQTDLNAQKPLLNEMPDIIVVTPSRLLQHLKAGNMMLK 160
Query: 58 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN 117
SL+ L++DEADLL S+GYE+++KA+ +P Q +L SAT S DV LK+L+LHN
Sbjct: 161 H---SLETLIIDEADLLFSFGYENEIKAVLTYLPTAYQAILASATLSEDVQALKRLVLHN 217
Query: 118 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
P IL L E P + + ++ E DK + LLKL L++ K +IF NT+D
Sbjct: 218 PAILKLEEPPLAP----PTQLAHYTLAAEETDKAAILYALLKLHLIRGKTIIFVNTVDRC 273
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237
++LKLFLE+FGI + ILN+ELP SR + +FN+G +D +IA+D+ +E H
Sbjct: 274 YKLKLFLEQFGIPTCILNSELPATSRCRAVTQFNSGTYDIIIASDEKALEEP-------H 326
Query: 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
V K K K D E GV RGIDF+ V VINF+ P + Y+HR GRT R N G +
Sbjct: 327 VIKTKKD---KRKKDKESGVARGIDFQFVSNVINFDFPLDINSYIHRAGRTARGKNQGTA 383
Query: 298 VSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAV 357
+S V+ E + E+++ + N + N+ + + VE RYRA+D K+VT+IAV
Sbjct: 384 LSFVAIRERPLMEKVEEHLKGTYNCE-NLFKTYQFKLEE-VEGFRYRAKDGWKAVTRIAV 441
Query: 358 RESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQ 417
RE+R +++R E++N EKLK++FE NP+DL L+ DK L HL+DVP+Y++ + +
Sbjct: 442 REARLKEIRQEVINCEKLKSYFEDNPRDLQSLRQDKALHTVKLQPHLKDVPEYIIPSTLK 501
Query: 418 EACKMVKLARAAMGNKNSSRRQG--PRRKFRKSDPLKSFSAEPTKR 461
+ K R N SS R + R S+PL S PTK+
Sbjct: 502 GIMGIGKRKRKFDRNAASSGATAVKSRHQARASNPLISLEI-PTKK 546
>gi|145232376|ref|XP_001399636.1| ATP-dependent RNA helicase dbp9 [Aspergillus niger CBS 513.88]
gi|134034083|sp|A2QCW6.1|DBP9_ASPNC RecName: Full=ATP-dependent RNA helicase dbp9
gi|134056552|emb|CAK37606.1| unnamed protein product [Aspergillus niger]
Length = 616
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 180/491 (36%), Positives = 277/491 (56%), Gaps = 58/491 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R L+ PDIVI+TP + L L D+L LV+DEAD
Sbjct: 132 VRSVNLTQKVSEAVQRTMLSDYPDIVISTPARVIANLGNSSLSL----DNLTHLVIDEAD 187
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D+ ALS IPRG Q LMSAT +S+VD LK L +P +L L + E
Sbjct: 188 LVLSYGYDEDINALSKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPVVLKLED-----KE 242
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG+KS
Sbjct: 243 EKGAGVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLFLEQFGVKSC 302
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---TKEK------------------DQ 231
+LN+ELP NSR+H+++EFN G++D +IA DD + +K K
Sbjct: 303 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGSKSKKAKNAGADEEEEAAGVMGSS 362
Query: 232 SDEGGHVDSRKSKKHPKAKL---DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
DE D + ++ + KL + ++G+ RGIDF+NV V+NF++P A Y HRIGRT
Sbjct: 363 DDEEAEDDKKSNRPDKRRKLTAKEKDYGISRGIDFQNVACVLNFDLPTTAKSYTHRIGRT 422
Query: 289 GRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQN 336
GR TG ++S V P + K E + + + +++ + + P+ +
Sbjct: 423 GRGGKTGMALSFVVPADQYGKHKPTSFPTAKHDEAVLAKIVKRQSKHGHEVKPYH-FEMS 481
Query: 337 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 396
V++ RYR D +++T++AV+E+RA+++R E++ SEKLK HFE NP +L L+HD +L
Sbjct: 482 QVDAFRYRMTDGLRAITRLAVQEARAREIRQELVKSEKLKRHFEDNPDELRQLRHDGELR 541
Query: 397 KKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGN----KNSSRRQGPRRK--- 444
HL+ +P+YL+ +K + E V +++ ++ +R +G RK
Sbjct: 542 SARIQPHLKHIPEYLMPSKGRKGISSEDVGFVGFRKSSDNRIRKARDKNRAKGKGRKPSG 601
Query: 445 FRKSDPLKSFS 455
RK DPLK+F+
Sbjct: 602 VRKVDPLKTFN 612
>gi|452843615|gb|EME45550.1| hypothetical protein DOTSEDRAFT_52793 [Dothistroma septosporum
NZE10]
Length = 644
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 191/541 (35%), Positives = 281/541 (51%), Gaps = 94/541 (17%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A C G ++ + + A+ +A LA PDIV+ATP + + L+ D
Sbjct: 125 AFTLFCAGDIRCE--NIARKEDAAVTKARLAQKPDIVVATPARAVQWSNDETLKL----D 178
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
+K L++DEADL+LSYGY+DDLK+++ +P G Q ++MSAT ++VD L L
Sbjct: 179 EIKQLIIDEADLVLSYGYKDDLKSIATSLPAGVQKIMMSATLRTEVDDLSSLFFSKQE-G 237
Query: 122 TLPEVGDVKDE--VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
T PE+ D+ E V + Q+ + +E +K L I + KL+L++ K +IF ID +R
Sbjct: 238 TGPEILDLSSEEAVEKPALAQYTVRTAEDEKFLLIYAIFKLQLIKGKIIIFVADIDRCYR 297
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD------ 233
+KLFLE+FGI+S +LN+ELP NSRLH++EEFN G++D +IA D+ + +++
Sbjct: 298 IKLFLEQFGIRSCVLNSELPVNSRLHVVEEFNRGVYDIIIAADEGEVVGIEEAKTANRKR 357
Query: 234 -----------------------------------EGGHVDSRK--SKKHPKAKLDSEFG 256
EGG + + +KK K + D E+G
Sbjct: 358 RRLEKEAEKEEEEDEAGEGMEDAIEPVEAGAEDGAEGGAAPAVQGPAKKERKPRNDREYG 417
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM---------- 306
V RGIDF+ V V+NF++P N+ Y HRIGRT RA TG ++S P E
Sbjct: 418 VSRGIDFRYVTCVLNFDLPANSKSYTHRIGRTARAGQTGMALSFYVPQEHYRKHKPTSIA 477
Query: 307 ------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRES 360
K+ ++IK D +E I + L +E RYR D ++VT+IAVRE+
Sbjct: 478 QCEMDEKVLDKIKQKQADKGDE----IKEWG-LDWAKLEGFRYRLADALRAVTRIAVREA 532
Query: 361 RAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEAC 420
R ++LRNE++ SEKLK HFE NP+DL L+HD + HL+ VPDYLL + + A
Sbjct: 533 RTKELRNELIKSEKLKRHFEENPEDLRHLRHDTESHAVRQQPHLKHVPDYLLPSGGKAAV 592
Query: 421 ------------KMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMK 468
+ +L +A NK R +G K + DPLKS +A KGR K
Sbjct: 593 SKDVGFVGIRKDRENRLRKARAFNKG--RGKGRLAKGKGLDPLKSLNA-------KGRGK 643
Query: 469 R 469
+
Sbjct: 644 K 644
>gi|158287479|ref|XP_564375.2| AGAP011147-PA [Anopheles gambiae str. PEST]
gi|157019670|gb|EAL41595.2| AGAP011147-PA [Anopheles gambiae str. PEST]
Length = 551
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 158/407 (38%), Positives = 239/407 (58%), Gaps = 20/407 (4%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V L+S + R LA PDIV++TPG + L+ G L + +SL+ + +DEAD
Sbjct: 115 IRVADLSSKEEKATHRHLLAERPDIVVSTPGRLRTVLADGTLNVR---ESLRCVTIDEAD 171
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+ ++G+E DLK + P Q +L SAT DV ++KK++L NP IL L E
Sbjct: 172 LMFTFGFEKDLKEVLKHFPPVHQSVLCSATLEEDVTQMKKMVLRNPVILKLEE----PQL 227
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ + + I E DK + T+LKL+L+Q K +IF ++D +RLKLFLE+FGI+S
Sbjct: 228 AVGTQLTHYQIEAEEVDKAAILYTVLKLKLIQGKCIIFVKSVDRCYRLKLFLEQFGIRSC 287
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK-- 250
ILN+ELP R H + +FN G +D +IA+D+ E + +KS K P K
Sbjct: 288 ILNSELPIKIRCHTVHQFNQGSYDIIIASDELMA-------ENPALVKKKSDKKPSTKQL 340
Query: 251 ---LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
++E V RGIDF+ V V+NF+ P + Y+HR GRT R N G+ +S V +E++
Sbjct: 341 LQQTETESSVSRGIDFQCVSCVVNFDFPSDLNSYIHRAGRTARGQNNGSVLSFVGIEELE 400
Query: 308 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 367
+ ++ F+ N+ + F + VE+ RYRA+D +++TKI++RE+R ++L+
Sbjct: 401 LKRNVEEFLQTLSNDAEFSMKDFN-FNFDEVEAFRYRAKDAWRAITKISIREARIKELKM 459
Query: 368 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA 414
EI NSEKLK+ FE NP+DL L+HD+ L HL DVP+YL+ A
Sbjct: 460 EIFNSEKLKSFFEENPRDLQTLRHDRPLHTVHVQEHLGDVPEYLVPA 506
>gi|403278477|ref|XP_003930831.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Saimiri boliviensis boliviensis]
Length = 547
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 173/445 (38%), Positives = 252/445 (56%), Gaps = 27/445 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V +++ ++ RA L PD+++ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAVEDSASQRAVLMEKPDVIVGTPS---RILSHLQQDSLKLRDSLELLVMDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + TLLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYTLLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGVVLTFVLPTEQSHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFQMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPH 508
Query: 430 MGNKNSSRRQGPRRKFRKSDPLKSF 454
K S ++ + +PL SF
Sbjct: 509 KKRKKLSSSCRKAKRVKSQNPLHSF 533
>gi|48146543|emb|CAG33494.1| DDX56 [Homo sapiens]
Length = 547
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 178/447 (39%), Positives = 255/447 (57%), Gaps = 31/447 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPP------ALRGLVRPH 508
Query: 430 MGNK--NSSRRQGPRRKFRKSDPLKSF 454
K +SS R+ R K +PL+SF
Sbjct: 509 KKRKKLSSSYRKAKRAK--SQNPLRSF 533
>gi|358365595|dbj|GAA82217.1| ATP dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 617
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 177/493 (35%), Positives = 274/493 (55%), Gaps = 61/493 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R L+ PDIVI+TP + L L D+L LV+DEAD
Sbjct: 132 VRSVNLTQKVSEAVQRTMLSDYPDIVISTPARVIANLGNSSLSL----DNLTHLVIDEAD 187
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D+ ALS IPRG Q LMSAT +S+VD LK L +P +L L + E
Sbjct: 188 LVLSYGYDEDINALSKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPVVLKLED-----KE 242
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG+KS
Sbjct: 243 EKGAGVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLFLEQFGVKSC 302
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-------------------------TK 227
+LN+ELP NSR+H+++EFN G++D +IA DD + +
Sbjct: 303 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGSKSKKAKNADADEEEEAAGVMGSS 362
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
+ ++++E +R K+ + ++G+ RGIDF+NV V+NF++P A Y HRIGR
Sbjct: 363 DDEEAEEDKSKSNRPDKRRKLTAKEKDYGISRGIDFQNVACVLNFDLPTTAKSYTHRIGR 422
Query: 288 TGRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQ 335
TGR TG ++S V P + K E + + + +++ + + P+
Sbjct: 423 TGRGGKTGMALSFVVPADQYGKHKPTSFPTAKHDEAVLAKIVKRQSKHGHEVKPYH-FEM 481
Query: 336 NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL 395
+ V++ RYR D +++T++AV+E+RA+++R E++ SEKLK HFE NP +L L+HD +L
Sbjct: 482 SQVDAFRYRMTDGLRAITRLAVQEARAREIRQELVKSEKLKRHFEDNPDELRQLRHDGEL 541
Query: 396 SKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNS----------SRRQGPRRK- 444
HL+ +P+YL+ +K ++ + KNS +R +G RK
Sbjct: 542 RSARIQPHLKHIPEYLMPSKGRKGISSEDVGFVGF-RKNSDNRIRKARDKNRAKGKGRKP 600
Query: 445 --FRKSDPLKSFS 455
RK DPLK+F+
Sbjct: 601 SGVRKVDPLKTFN 613
>gi|350634532|gb|EHA22894.1| hypothetical protein ASPNIDRAFT_46984 [Aspergillus niger ATCC 1015]
Length = 632
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 180/491 (36%), Positives = 277/491 (56%), Gaps = 58/491 (11%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++ V LT + + R L+ PDIVI+TP + L L D+L LV+DEAD
Sbjct: 148 VRSVNLTQKVSEAVQRTMLSDYPDIVISTPARVIANLGNSSLSL----DNLTHLVIDEAD 203
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D+ ALS IPRG Q LMSAT +S+VD LK L +P +L L + E
Sbjct: 204 LVLSYGYDEDINALSKAIPRGVQTFLMSATLTSEVDTLKGLFCRSPVVLKLED-----KE 258
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V QF + C+E +K L + KL+L++ K +IF ID +RLKLFLE+FG+KS
Sbjct: 259 EKGAGVSQFVVKCAEDEKFLLTYVIFKLQLIKGKVIIFVGDIDRCYRLKLFLEQFGVKSC 318
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---TKEK------------------DQ 231
+LN+ELP NSR+H+++EFN G++D +IA DD + +K K
Sbjct: 319 VLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVLGSKSKKAKNAGADEEEEAAGVMGSS 378
Query: 232 SDEGGHVDSRKSKKHPKAKL---DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
DE D + ++ + KL + ++G+ RGIDF+NV V+NF++P A Y HRIGRT
Sbjct: 379 DDEEAEDDKKSNRPDKRRKLTAKEKDYGISRGIDFQNVACVLNFDLPTTAKSYTHRIGRT 438
Query: 289 GRAYNTGASVSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQN 336
GR TG ++S V P + K E + + + +++ + + P+ +
Sbjct: 439 GRGGKTGMALSFVVPADQYGKHKPTSFPTAKHDEAVLAKIVKRQSKHGHEVKPYH-FEMS 497
Query: 337 AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLS 396
V++ RYR D +++T++AV+E+RA+++R E++ SEKLK HFE NP +L L+HD +L
Sbjct: 498 QVDAFRYRMTDGLRAITRLAVQEARAREIRQELVKSEKLKRHFEDNPDELRQLRHDGELR 557
Query: 397 KKPPASHLRDVPDYLLDAK-----TQEACKMVKLARAAMGN----KNSSRRQGPRRK--- 444
HL+ +P+YL+ +K + E V +++ ++ +R +G RK
Sbjct: 558 SARIQPHLKHIPEYLMPSKGRKGISSEDVGFVGFRKSSDNRIRKARDKNRAKGKGRKPSG 617
Query: 445 FRKSDPLKSFS 455
RK DPLK+F+
Sbjct: 618 VRKVDPLKTFN 628
>gi|10434373|dbj|BAB14238.1| unnamed protein product [Homo sapiens]
Length = 547
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 178/447 (39%), Positives = 255/447 (57%), Gaps = 31/447 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RTLSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPP------ALRGLVRPH 508
Query: 430 MGNK--NSSRRQGPRRKFRKSDPLKSF 454
K +SS R+ R K +PL+SF
Sbjct: 509 KKRKKLSSSCRKAKRAK--SQNPLRSF 533
>gi|355560653|gb|EHH17339.1| Putative ATP-dependent RNA helicase DDX56 [Macaca mulatta]
Length = 529
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 165/402 (41%), Positives = 238/402 (59%), Gaps = 21/402 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 411
L+SEKLK +FE NP+DL LL+HD L HL VPDYL
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYL 496
>gi|355747655|gb|EHH52152.1| Putative ATP-dependent RNA helicase DDX56 [Macaca fascicularis]
Length = 475
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 165/402 (41%), Positives = 238/402 (59%), Gaps = 21/402 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 59 VRVANVSAAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 115
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 116 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 171
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 172 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 231
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 232 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 283
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 284 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHL 343
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 344 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 400
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 411
L+SEKLK +FE NP+DL LL+HD L HL VPDYL
Sbjct: 401 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYL 442
>gi|62896883|dbj|BAD96382.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 variant [Homo sapiens]
Length = 547
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 178/447 (39%), Positives = 255/447 (57%), Gaps = 31/447 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPATLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTTEAYIHRAGRTARANNPGIVLTFVLPTEQFHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPP------ALRGLVRPH 508
Query: 430 MGNK--NSSRRQGPRRKFRKSDPLKSF 454
K +SS R+ R K +PL+SF
Sbjct: 509 KKRKKLSSSCRKAKRAK--SQNPLRSF 533
>gi|344230357|gb|EGV62242.1| ATP-dependent RNA helicase DBP9 [Candida tenuis ATCC 10573]
Length = 560
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 171/429 (39%), Positives = 255/429 (59%), Gaps = 36/429 (8%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
+ L+ C ++ V+ L+S++ + + L P+I+I+TP + + L S S S
Sbjct: 111 IKLLVYCANKIN--VINLSSNLSDQVINSMLVNKPEIIISTPSKLIQVLDKA---SPSIS 165
Query: 61 -DSLKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHN 117
S+K L +DE DL+LSYGY+DD+ L +P + Q LMSAT + D+++LK
Sbjct: 166 LASVKNLTIDEVDLILSYGYKDDVIKLEEYLPIKKNLQVFLMSATVNDDLNELKAKFCSK 225
Query: 118 PYILTLPEVGDVKDEVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDM 176
P IL L DE I N + Q++ +E DK L + KL L++ K L+F N+ID
Sbjct: 226 PAILKL------NDENISSNKLVQYYCRTTEFDKFLLSYVIFKLNLIKGKTLVFVNSIDR 279
Query: 177 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-TKEKDQSDEG 235
+RLKLFLE+FGI+ ILN+ELP NSRLHI++EFN +++ LIATDDT T EK+
Sbjct: 280 GYRLKLFLEQFGIRCCILNSELPVNSRLHIVDEFNKNIYNLLIATDDTNDTNEKE----- 334
Query: 236 GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTG 295
V+ S K K K D E+GV RG+DF+NV V+NF++P + YVHR+GRT RA +G
Sbjct: 335 --VEDSTSNKKDKVKKDKEYGVSRGVDFRNVACVLNFDLPTTSRAYVHRVGRTARAGKSG 392
Query: 296 ASVSLVSPDE------------MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRY 343
++S V PD+ K E+I + + + + + P+ + VE RY
Sbjct: 393 MALSFVIPDKEFGKHKVASLKTAKRDEKILARIVKQQTKSGFELKPYQFDIKQ-VEGFRY 451
Query: 344 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASH 403
R+ED ++VT+ A+RE+R ++L+ E++NS+KLK FE NP+DL L+HDK+L +
Sbjct: 452 RSEDAFRAVTQTAIREARVKELKQELINSDKLKRFFEENPQDLVSLRHDKELHPSRVQTQ 511
Query: 404 LRDVPDYLL 412
L+ VP+YLL
Sbjct: 512 LKRVPEYLL 520
>gi|9506931|ref|NP_061955.1| probable ATP-dependent RNA helicase DDX56 isoform 1 [Homo sapiens]
gi|426356101|ref|XP_004045430.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Gorilla gorilla gorilla]
gi|20139238|sp|Q9NY93.1|DDX56_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
Full=ATP-dependent 61 kDa nucleolar RNA helicase;
AltName: Full=DEAD box protein 21; AltName: Full=DEAD
box protein 56
gi|11527084|gb|AAG36876.1|AF247666_1 DEAD-box RNA helicase [Homo sapiens]
gi|7576252|emb|CAB87992.1| nucleolar RNA-helicase [Homo sapiens]
gi|12052922|emb|CAB66635.1| hypothetical protein [Homo sapiens]
gi|12654785|gb|AAH01235.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
gi|51094496|gb|EAL23752.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Homo sapiens]
gi|119581498|gb|EAW61094.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_b [Homo
sapiens]
gi|123980624|gb|ABM82141.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [synthetic construct]
gi|123995445|gb|ABM85324.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [synthetic construct]
gi|168277808|dbj|BAG10882.1| ATP-dependent RNA helicase DDX56 [synthetic construct]
Length = 547
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 178/447 (39%), Positives = 255/447 (57%), Gaps = 31/447 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPH 508
Query: 430 MGNK--NSSRRQGPRRKFRKSDPLKSF 454
K +SS R+ R K +PL+SF
Sbjct: 509 KKRKKLSSSCRKAKRAK--SQNPLRSF 533
>gi|85096857|ref|XP_960335.1| hypothetical protein NCU07070 [Neurospora crassa OR74A]
gi|74628745|sp|Q7S6F3.1|DBP9_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-9
gi|28921823|gb|EAA31099.1| hypothetical protein NCU07070 [Neurospora crassa OR74A]
Length = 676
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 169/439 (38%), Positives = 255/439 (58%), Gaps = 41/439 (9%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A C +Q +LT ++ + LR+ LA PD++++TP + +G L
Sbjct: 190 AFSAFCTKDIQ--SAKLTDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALSVAK--- 244
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRG-CQCLLMSATSSSD-VDKLKKLILHNPY 119
L+ LVLDEADL+LSYGY++D++ ++ +P+G Q +MSAT SD +D LK NP
Sbjct: 245 -LQYLVLDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSATLVSDELDTLKGFFCRNPT 303
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
+L L E +DE + QF++ C E DK L + KL+L++ L+F ID A+R
Sbjct: 304 MLDLKEEFSNEDE----KLTQFYVKCGEDDKWLISYLIFKLQLIKGPCLVFVADIDRAYR 359
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----------TQTKE 228
LKLF E+F I+S +LN+ELP N+R+ I+EEFN G++D +IA+D+ + KE
Sbjct: 360 LKLFFEQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERSEVFLEDEKTEEKKE 419
Query: 229 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
+ + G K K + D E+GV RGIDFKNV VINF+MP +++ Y+HRIGRT
Sbjct: 420 EQGEKKEGDEKKNGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDMPTSSSSYIHRIGRT 479
Query: 289 GRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLA 334
RA G ++S+V P ++ F + K +D ++A P+
Sbjct: 480 ARAGRAGIALSMVVPHDL--FGKHKPTSIKQCEKDEKVLAKVMRQQAKLNRKLEPYN-FN 536
Query: 335 QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD 394
++ +E+ RYR D ++VTK+A+RE+R ++LR E+L SE LK +FE NP +L L+HD +
Sbjct: 537 KDQMEAFRYRMNDALRAVTKVAIREARTRELRQELLRSETLKRYFEENPHELSHLRHDGE 596
Query: 395 L-SKKPPASHLRDVPDYLL 412
L +K +HL+ VPDYLL
Sbjct: 597 LGTKMRQQAHLKHVPDYLL 615
>gi|158287483|ref|XP_309500.4| AGAP011145-PA [Anopheles gambiae str. PEST]
gi|157019672|gb|EAA05151.5| AGAP011145-PA [Anopheles gambiae str. PEST]
Length = 548
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 158/407 (38%), Positives = 238/407 (58%), Gaps = 20/407 (4%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V L+S + R LA PDIV++TPG + L+ G L + +SL+ + +DEAD
Sbjct: 112 IRVADLSSKEEKATHRHLLAERPDIVVSTPGRLRTVLADGTLNVR---ESLRCVTIDEAD 168
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+ ++G+E DLK + P Q +L SAT DV ++KK++L NP IL L E
Sbjct: 169 LMFTFGFEKDLKEVLKHFPPVHQSVLCSATLEEDVTQMKKMVLRNPVILKLEE----PQL 224
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ + + I E DK + T+LKL+L+Q K +IF ++D +RLKLFLE+FGI+S
Sbjct: 225 AVGTQLTHYQIEAEEVDKAAILYTVLKLKLIQGKCIIFVKSVDRCYRLKLFLEQFGIRSC 284
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK-- 250
ILN+ELP R H + +FN G +D +IA+D+ E + +KS K P K
Sbjct: 285 ILNSELPIKIRCHTVHQFNQGSYDIIIASDELMA-------ENPALVKKKSDKKPSTKQL 337
Query: 251 ---LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
++E V RGIDF+ V V+NF+ P + Y+HR GRT R N G+ +S V E++
Sbjct: 338 LQQTEAESSVSRGIDFQCVSCVVNFDFPSDLNSYIHRAGRTARGQNNGSVLSFVGIQELE 397
Query: 308 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 367
+ ++ F+ N+ + F + VE+ RYRA+D +++TKI++RE+R ++L+
Sbjct: 398 LKRNVEEFLQTLSNDAEFSMKDFN-FNFDEVEAFRYRAKDAWRAITKISIREARIKELKM 456
Query: 368 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA 414
EI NSEKLK+ FE NP+DL L+HD+ L HL DVP+YL+ A
Sbjct: 457 EIFNSEKLKSFFEENPRDLQTLRHDRPLHTVHVQEHLGDVPEYLVPA 503
>gi|119581499|gb|EAW61095.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_c [Homo
sapiens]
Length = 547
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 178/447 (39%), Positives = 255/447 (57%), Gaps = 31/447 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPH 508
Query: 430 MGNK--NSSRRQGPRRKFRKSDPLKSF 454
K +SS R+ R K +PL+SF
Sbjct: 509 KKRKKLSSSCRKAKRAK--SQNPLRSF 533
>gi|50287517|ref|XP_446188.1| hypothetical protein [Candida glabrata CBS 138]
gi|74691026|sp|Q6FUA6.1|DBP9_CANGA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49525495|emb|CAG59112.1| unnamed protein product [Candida glabrata]
Length = 595
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 176/453 (38%), Positives = 251/453 (55%), Gaps = 59/453 (13%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCL-----STGVLQSK 57
LI C + KV+ L + + S L L+ P+I++ TP + L + G+
Sbjct: 114 LIHYCSKDI--KVLNLAADLSTSVLNTLLSENPEIIVGTPSKILNILERNTDTVGI---- 167
Query: 58 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLIL 115
D LK LV+DE DL+L++GY+DDL ++ +P + Q LMSAT S D+ LK+
Sbjct: 168 ---DDLKFLVIDEVDLVLTFGYQDDLDKIAEYLPLKKNLQTFLMSATLSDDIQSLKQKYC 224
Query: 116 HNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTID 175
+P I+ + KD+ + Q+++ E DK L+ + KL L++ K L+F N ID
Sbjct: 225 RSPAIIKFNDDEINKDKT---KLVQYYVRVGEFDKFLFCYVIFKLGLIKGKTLVFVNNID 281
Query: 176 MAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-QTKEKD---- 230
+RLKL LE+FGIKS ILN ELP NSR HI+++FN ++ LIATDD KE D
Sbjct: 282 RGYRLKLVLEQFGIKSCILNNELPANSRQHIVDQFNKNVYHLLIATDDADNIKEFDDEQK 341
Query: 231 -------QSDEGGHVDSR---------KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
++DE V + KSK K D E+GV RG+DFKNV V+NF++
Sbjct: 342 DDIQVEEKNDETNTVVAEESTNSTTGIKSKTKNNYKQDKEYGVSRGVDFKNVACVVNFDL 401
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI-------- 326
P A YVHR+GRT RA +G ++S V P +K F + K + +D I
Sbjct: 402 PTTAKAYVHRVGRTARAGKSGTAISFVVP--LKEFGKHKPSMLPSAKKDEKILSRIIKQQ 459
Query: 327 ------IAPFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 379
I P+ L Q VE RYR ED ++VT++AVRE+R ++L+ E+L SEKLK HF
Sbjct: 460 SKLGLEIQPYSFDLKQ--VEGFRYRMEDGFRAVTQVAVREARIKELKEELLASEKLKRHF 517
Query: 380 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
E NP +L L+HDK+L +HL+ +P+YLL
Sbjct: 518 EENPIELKSLRHDKELHPARVQNHLKRIPEYLL 550
>gi|351706201|gb|EHB09120.1| Putative ATP-dependent RNA helicase DDX56 [Heterocephalus glaber]
Length = 546
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 170/443 (38%), Positives = 257/443 (58%), Gaps = 24/443 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L L+ DSL++LV+DE D
Sbjct: 113 VRVANVSAAEDSASQRAVLMEKPDVVVGTPSRILNHLQQDTLK---LRDSLELLVMDETD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKNLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP +SR HI+ +FN GL+D +IATD + + G RKSK +
Sbjct: 286 CVLNGELPLHSRCHIISQFNQGLYDCVIATDAEVLGPPGKGKQWG----RKSKGDKAS-- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V +E +
Sbjct: 340 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLREEQLQLGK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + D+ + + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEELLSDEGS--APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL VPDYL+ + + +
Sbjct: 457 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVGTHRKRKKLFS 516
Query: 432 NKNSSRRQGPRRKFRKSDPLKSF 454
K + +K + +PL+SF
Sbjct: 517 GKKA-------KKVKTQNPLRSF 532
>gi|296209197|ref|XP_002751433.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Callithrix
jacchus]
Length = 547
Score = 282 bits (722), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/445 (38%), Positives = 252/445 (56%), Gaps = 27/445 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+++ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDLASQRAVLMEKPDVIVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + TLLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYTLLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDLEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPH 508
Query: 430 MGNKNSSRRQGPRRKFRKSDPLKSF 454
K S ++ + +PL SF
Sbjct: 509 KKRKKLSSSCRKAKRVKSQNPLHSF 533
>gi|426227857|ref|XP_004008031.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Ovis aries]
Length = 552
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 174/447 (38%), Positives = 259/447 (57%), Gaps = 26/447 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + L L+ DS+++LV+DEAD
Sbjct: 113 IRVANVSAAEDLASQRAVLMEKPDVVVGTPSRILNHLQQDNLK---LRDSMELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPA 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD + G K K KA
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGPPVKGKHRG-----KGPKRDKAS- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 340 DPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + D + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEELLSGDSG--APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL +VPDYL+ T +V A +
Sbjct: 457 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVQLLT-----LVPPALRGLV 511
Query: 432 NKNSSRRQGP----RRKFRKSDPLKSF 454
+ + R++ P +K + +PL+SF
Sbjct: 512 HPHKKRKKPPTSKKAKKAKTQNPLRSF 538
>gi|114613145|ref|XP_001145021.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 6 [Pan
troglodytes]
gi|410207178|gb|JAA00808.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
gi|410263070|gb|JAA19501.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
gi|410292962|gb|JAA25081.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
gi|410328987|gb|JAA33440.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Pan troglodytes]
Length = 547
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 178/447 (39%), Positives = 255/447 (57%), Gaps = 31/447 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVICETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDLEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPH 508
Query: 430 MGNK--NSSRRQGPRRKFRKSDPLKSF 454
K +SS R+ R K +PL+SF
Sbjct: 509 KKRKKLSSSCRKAKRAK--SQNPLRSF 533
>gi|388858151|emb|CCF48219.1| probable ATP dependent RNA helicase of the DEAD-box family
[Ustilago hordei]
Length = 679
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 194/507 (38%), Positives = 265/507 (52%), Gaps = 94/507 (18%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL- 86
R L+ PD+VIATP L L KS +SL I DEADL+LSYG++ D+K+L
Sbjct: 186 RLLLSEKPDVVIATPSKALSYLQNASLDLKSGMESLAI---DEADLILSYGHDADVKSLL 242
Query: 87 -SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
+P Q LLMSAT +SDV KLK L+L P +L L E DE N+ QF+
Sbjct: 243 SGNYLPSHFQSLLMSATMTSDVSKLKGLLLRKPVVLKLNE----SDESSASNLVQFYTKT 298
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
SE DK L + +LKL+L++ KA++F N ++ +RLKLFLEKFG+K+ +LNAELP NSR
Sbjct: 299 SEEDKFLLVYIILKLKLIRGKAILFVNELERGYRLKLFLEKFGLKACVLNAELPINSRYS 358
Query: 206 ILEEFNAGLFDYLIATDDTQ----------------------------------TKEKDQ 231
I+EEFN G FDY++ATD+ +K +
Sbjct: 359 IVEEFNKGRFDYIVATDEPTGLGKADADQDEDKDEDENEEEEETREVEDAGEEVAGKKRK 418
Query: 232 SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 291
SD SRK +K K+K +EFGV RG+DF NV VINF++P GY+HRIGRT R
Sbjct: 419 SDTASSKKSRKKQKQSKSKTSAEFGVSRGVDFINVSCVINFDLPTTVDGYIHRIGRTARG 478
Query: 292 YNTGASVSLVSP-----------------DE--MKIFEEIKSFVGDDENEDSNIIAPFPL 332
+G S+S V P DE ++ S +G + E S
Sbjct: 479 GASGTSLSFVVPASEYGKSKYLNCPSTIKDESVLRKISRSTSAIGGEVQEWS-------- 530
Query: 333 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHD 392
++VE RYR D KS+TK+ +RE+R ++L++EIL S KL++HF+ +P DL L+HD
Sbjct: 531 YDASSVEGFRYRVSDTLKSITKLLIREARIKELKHEILTSTKLQSHFQDHPDDLSYLQHD 590
Query: 393 KD-LSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA---------------------M 430
K L+ + HL+ VP YL+ A K+ + M
Sbjct: 591 KALLNSRAQQGHLKHVPQYLVPKIINPASKLTGSTGSTYKGYVPKNKHLDGKDSKKNRLM 650
Query: 431 GNKN-SSRRQGPRRKFR-KSDPLKSFS 455
G K+ SS +G K R K+DPL+ FS
Sbjct: 651 GAKSKSSTAKGNGVKGRKKADPLRKFS 677
>gi|260944756|ref|XP_002616676.1| hypothetical protein CLUG_03917 [Clavispora lusitaniae ATCC 42720]
gi|238850325|gb|EEQ39789.1| hypothetical protein CLUG_03917 [Clavispora lusitaniae ATCC 42720]
Length = 598
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 166/449 (36%), Positives = 252/449 (56%), Gaps = 53/449 (11%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+ V L+S++ L++ L PDI+++TP + + L V + ++ LV+DE
Sbjct: 117 KFSAVNLSSNVSEQVLKSLLVNKPDIIVSTPAKLIEVLEQNVNTNMIDLSKVRSLVIDEV 176
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+LSYGY +DL+ L + +P Q LMSAT + D+++LK P +L L E
Sbjct: 177 DLVLSYGYMEDLQQLESYLPVKTNLQTFLMSATINDDLEELKTRFCSRPAVLRLNEQNLT 236
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
K N+ Q++ +E DK L + KL L++ K LIF NTID +RLKLFLE+FGI
Sbjct: 237 K-----ANLVQYYARTTEFDKFLLSYVIFKLNLIKGKTLIFVNTIDRGYRLKLFLEQFGI 291
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--------------TKEKDQSDEG 235
+ ILN+ELP NSRLHI++EFN G+++ LIATD+T TK+ ++++
Sbjct: 292 RCCILNSELPVNSRLHIVDEFNKGVYNLLIATDETNDFTKEEDEDEEEGTTKKVAENEQQ 351
Query: 236 GHVDSRKSKKHPKAKLDS------------------EFGVVRGIDFKNVHTVINFEMPQN 277
G+ D K++ + +S E+GV RG+DF+NV V+NF++P
Sbjct: 352 GNSD-EKTENNENVTEESEASHKKSKKNKNKAKKDKEYGVSRGVDFRNVACVLNFDLPTT 410
Query: 278 AAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG---DD---------ENEDSN 325
+ Y+HR+GRT RA G ++S V P + + G DD ++++
Sbjct: 411 SRAYIHRVGRTARAGKAGMALSFVIPKKEVGRHRVAGLGGPQKDDKILKRIEKQQSKNGF 470
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
+ P+ VE RYRAED +++T +A+RE+R +L+NE+LNS+KLK FE NP+D
Sbjct: 471 ELKPYQ-FDMKQVEGFRYRAEDAFRAITLVAIREARVMELKNELLNSDKLKRFFEENPQD 529
Query: 386 LDLLKHDKDLSKKPPASHLRDVPDYLLDA 414
L L+HDK+L S L+ VP+YLL A
Sbjct: 530 LASLRHDKELHPSRVQSQLKRVPEYLLPA 558
>gi|270002128|gb|EEZ98575.1| hypothetical protein TcasGA2_TC001089 [Tribolium castaneum]
Length = 550
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 170/454 (37%), Positives = 258/454 (56%), Gaps = 33/454 (7%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+++ V + + S + L PDIV+ TP + K + G + K+ S+++LV+DEA
Sbjct: 113 EIRCVDVAPQVELSVQKPLLVEQPDIVVGTPTRVLKHIKAGYMDLKT---SMELLVIDEA 169
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+ S+GYE ++K L +P Q +L SAT S DV LK L+LHNP IL L E
Sbjct: 170 DLVFSFGYESEVKELLERLPSIYQAILASATLSEDVKNLKSLVLHNPVILKLEE-----P 224
Query: 132 EVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
E+ P + + + + E DK + LLKL L++ K +IF NT+D +++KL+LE+FGI
Sbjct: 225 EIAPASQLSHYHLMAEEMDKATILYALLKLHLIRGKTIIFVNTVDKCYKIKLYLEQFGIP 284
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ +LN+ELP R H + +FN G++D ++A+D EK G D K K
Sbjct: 285 TCVLNSELPAKIRCHSVNQFNQGIYDTIVASD-----EKALEQPGNPNDPELKKSKRKKD 339
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
+S GV RGIDF+ V VINF+ P + YVHR GRT R N G+ +S VS E + E
Sbjct: 340 KES--GVSRGIDFQCVANVINFDFPLDVQSYVHRAGRTARGNNQGSVLSFVSIREKPLLE 397
Query: 311 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
++++ D++ D +I + + VES +YRA+D ++VT+IAVRE+R ++++ EI
Sbjct: 398 QVETHFKSDQD-DVSIFKSYQ-FKLDEVESFKYRAKDAWRAVTRIAVREARLKEIKQEIF 455
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAM 430
N +KLK++FE NP DL +L+HDK L HL DVP+Y++ + A++
Sbjct: 456 NCQKLKSYFEDNPTDLQVLRHDKALHTVKIQQHLSDVPEYIVPPTLK--------GIASL 507
Query: 431 GNKNSSRR-----QGPRRKF--RKSDPLKSFSAE 457
G K R QG +F +K++PL S E
Sbjct: 508 GKKKRKREYYRTSQGSSSRFQAKKNNPLLSMDFE 541
>gi|328771085|gb|EGF81125.1| hypothetical protein BATDEDRAFT_16201 [Batrachochytrium
dendrobatidis JAM81]
Length = 588
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 169/437 (38%), Positives = 249/437 (56%), Gaps = 53/437 (12%)
Query: 19 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 78
T + + R+ LA PDI++ATP + + L+ K ++++ +V+DEADL+LSYG
Sbjct: 109 TGDVSVAGQRSILAETPDIIVATPAKIMAHIRENNLELK---ETVESMVIDEADLILSYG 165
Query: 79 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV 138
+++D+K L +PR Q LMSAT S+DV++L++L+L NP IL L E + E+ +
Sbjct: 166 HDEDVKKLLLHLPRILQSYLMSATLSTDVEELRQLVLRNPVILKLEESAE---EL--SML 220
Query: 139 QQFWISCSERDKLLYILTLLKLELV---QKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 195
Q+ I C E++K L + KL + KA++F NTID ++LK+FLE FGIKS LN
Sbjct: 221 TQYVIQCEEKEKFLLTFFIFKLHVHPFGSGKAIVFVNTIDRCYKLKIFLESFGIKSCALN 280
Query: 196 AELPQNSRLHILEEFNAGLFDYLIATD------------DTQTKEKDQS---DEGGHVDS 240
+ELP SR HI++EFN G++D +IATD D +T+E + D+ G S
Sbjct: 281 SELPLKSRFHIVQEFNKGVYDIIIATDENSGLFDAEDRADLETEEAKANMTVDDKGKTAS 340
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA-YNTGASVS 299
+ + K K + + E+GV RGIDF NV VINF++P+++ Y HR+GRT R +N G ++S
Sbjct: 341 KTNNK-SKRESNHEYGVSRGIDFVNVQAVINFDLPRSSRAYQHRVGRTARGVHNKGYALS 399
Query: 300 LV--SPDEMKIFEEIKSFVGDDENEDSNI----------------------IAPFPLLAQ 335
V S + + K E + S I I PF
Sbjct: 400 FVTNSSEHTVVHSSRKKQRAAAEQQSSKIKQMTDAELLPRIEKRQAAMGREILPFAF-DM 458
Query: 336 NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL 395
VE RYR +DV +TK A++E+R ++++ EILNSEKLK HFE NP+D L+HD+
Sbjct: 459 TQVEGFRYRVDDVLGLITKNAIKEARLKEIKAEILNSEKLKTHFENNPQDFQALRHDRTT 518
Query: 396 SKKPPASHLRDVPDYLL 412
+HLR VP+YLL
Sbjct: 519 HSVRAENHLRHVPNYLL 535
>gi|358057669|dbj|GAA96434.1| hypothetical protein E5Q_03101 [Mixia osmundae IAM 14324]
Length = 642
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 172/440 (39%), Positives = 251/440 (57%), Gaps = 68/440 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE-DDLKAL- 86
LA PDIV+ATP + L L+S++ + +L+ LV+DEADL+LSYG+ DD+KAL
Sbjct: 148 GLAEKPDIVVATPS---RALDH--LRSETLALTALESLVIDEADLILSYGHSSDDIKALL 202
Query: 87 --SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
S +P Q LMSAT + +VD+LK ++L P +L L E D N+ Q +
Sbjct: 203 SGSWNLPAVYQSYLMSATLNDEVDELKGIVLRRPVVLKLDEQEDGL-----ANLTQHCVR 257
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
CSE DK L+I +LKL+LV+ KALIF N +D +R+KLFLEKFG++S +LNAELP NSR
Sbjct: 258 CSEEDKFLFIYVILKLKLVKGKALIFVNDVDRGYRVKLFLEKFGLRSGVLNAELPFNSRY 317
Query: 205 HILEEFNAGLFDYLIATDDTQTKE--------------------------KDQSDEGGHV 238
H ++EFN G+FDYLIATD++ E ++ +E ++
Sbjct: 318 HAVQEFNRGVFDYLIATDESGLSEAPSTAASMPQVEDLIPAQAGEAVDPAQEPIEELDNI 377
Query: 239 DSRKSKKHPKAKLDS-----------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
++ K K+ K + S ++GV RG+DF +V VINF++P N Y HR+GR
Sbjct: 378 ETGKRKREDKPETASKKRKASKNSQIDYGVSRGVDFVDVACVINFDLPANVESYTHRVGR 437
Query: 288 TGRAYNTGASVSLVSPDEM---KIFEEI------------KSFVGDDENEDSNIIAPFPL 332
T RA TG ++S V P + + F ++ + D + + +
Sbjct: 438 TARAGRTGMALSFVVPKALWGKQTFGDLSLPNARRDEAHWRKIEKDQKARGVTDLKEYKF 497
Query: 333 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHD 392
+ VE RYR ED +SVT+ ++RE+R ++++ E++NS+KLKAHFE NP DLD L+HD
Sbjct: 498 DMKQ-VEGFRYRMEDGLRSVTRASIREARVREIKQEVINSDKLKAHFEDNPADLDFLRHD 556
Query: 393 KDLSKKPPASHLRDVPDYLL 412
K L H++ VP YL+
Sbjct: 557 KPLHPARVQPHMKHVPSYLM 576
>gi|91077434|ref|XP_966623.1| PREDICTED: similar to ATP-dependent RNA helicase DBP9 [Tribolium
castaneum]
Length = 647
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 170/454 (37%), Positives = 258/454 (56%), Gaps = 33/454 (7%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+++ V + + S + L PDIV+ TP + K + G + K+ S+++LV+DEA
Sbjct: 113 EIRCVDVAPQVELSVQKPLLVEQPDIVVGTPTRVLKHIKAGYMDLKT---SMELLVIDEA 169
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+ S+GYE ++K L +P Q +L SAT S DV LK L+LHNP IL L E
Sbjct: 170 DLVFSFGYESEVKELLERLPSIYQAILASATLSEDVKNLKSLVLHNPVILKLEE-----P 224
Query: 132 EVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
E+ P + + + + E DK + LLKL L++ K +IF NT+D +++KL+LE+FGI
Sbjct: 225 EIAPASQLSHYHLMAEEMDKATILYALLKLHLIRGKTIIFVNTVDKCYKIKLYLEQFGIP 284
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ +LN+ELP R H + +FN G++D ++A+D EK G D K K
Sbjct: 285 TCVLNSELPAKIRCHSVNQFNQGIYDTIVASD-----EKALEQPGNPNDPELKKSKRKKD 339
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
+S GV RGIDF+ V VINF+ P + YVHR GRT R N G+ +S VS E + E
Sbjct: 340 KES--GVSRGIDFQCVANVINFDFPLDVQSYVHRAGRTARGNNQGSVLSFVSIREKPLLE 397
Query: 311 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
++++ D++ D +I + + VES +YRA+D ++VT+IAVRE+R ++++ EI
Sbjct: 398 QVETHFKSDQD-DVSIFKSYQ-FKLDEVESFKYRAKDAWRAVTRIAVREARLKEIKQEIF 455
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAM 430
N +KLK++FE NP DL +L+HDK L HL DVP+Y++ + A++
Sbjct: 456 NCQKLKSYFEDNPTDLQVLRHDKALHTVKIQQHLSDVPEYIVPPTLK--------GIASL 507
Query: 431 GNKNSSRR-----QGPRRKF--RKSDPLKSFSAE 457
G K R QG +F +K++PL S E
Sbjct: 508 GKKKRKREYYRTSQGSSSRFQAKKNNPLLSMDFE 541
>gi|77735611|ref|NP_001029501.1| probable ATP-dependent RNA helicase DDX56 [Bos taurus]
gi|122140173|sp|Q3SZ40.1|DDX56_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX56; AltName:
Full=DEAD box protein 56
gi|74267874|gb|AAI03170.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Bos taurus]
gi|296488364|tpg|DAA30477.1| TPA: probable ATP-dependent RNA helicase DDX56 [Bos taurus]
Length = 546
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 240/401 (59%), Gaps = 17/401 (4%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L L+ DS+++LV+DEAD
Sbjct: 113 IRVANVSAAEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLK---LRDSMELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPA 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD + G K K KA
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGPPVKGKHRG-----KGPKRDKAS- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 340 DPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + D + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEELLSGDSG--APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
SEKLK +FE NP+DL LL+HD L HL +VPDYL+
Sbjct: 457 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLV 497
>gi|440903065|gb|ELR53772.1| Putative ATP-dependent RNA helicase DDX56 [Bos grunniens mutus]
Length = 546
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 240/401 (59%), Gaps = 17/401 (4%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L L+ DS+++LV+DEAD
Sbjct: 113 IRVANVSAAEDSASQRAVLMEKPDVVVGTPSRILNHLQQDNLK---LRDSMELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPA 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD + G K K KA
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGPPVKGKHRG-----KGPKRDKAS- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 340 DPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + D + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEELLSGDSG--APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
SEKLK +FE NP+DL LL+HD L HL +VPDYL+
Sbjct: 457 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLV 497
>gi|223590194|sp|A5DC85.2|DBP9_PICGU RecName: Full=ATP-dependent RNA helicase DBP9
gi|190344991|gb|EDK36792.2| hypothetical protein PGUG_00890 [Meyerozyma guilliermondii ATCC
6260]
Length = 586
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 168/427 (39%), Positives = 252/427 (59%), Gaps = 30/427 (7%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD- 61
L+ C Q + L +++ + + L+ P+I+I+TP L+T + + S D
Sbjct: 130 LLVYCNSITQ---INLATNVSDQVVVSLLSAKPEIIISTPSR----LTTVLEKHASIVDL 182
Query: 62 -SLKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNP 118
++ L +DE DL+LSYGY +DL+ L +P R Q LMSAT + DV+ LK P
Sbjct: 183 TTVTSLAIDEVDLMLSYGYMEDLQKLDDFLPIKRNLQTYLMSATVNDDVNDLKARFCTKP 242
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
I+ L + + ++ ++ QF+ SE DK L+ + KL L++ K L F N ID +
Sbjct: 243 AIIKLNDNEENQNRLV-----QFYARTSEFDKFLFAYVIFKLHLIKGKTLAFVNNIDRGY 297
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-TQTKEKDQSDEGGH 237
RLKLFLE+FG++ ILN+ELP NSRLHI++EFN +++ LIA+D+ T+ E++ D+
Sbjct: 298 RLKLFLEQFGVRCCILNSELPVNSRLHIVDEFNKNVYNLLIASDESTEVTEQEGEDDQED 357
Query: 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
KSKK K+D E+GV RG+DF+NV V+NF++P + YVHR+GRT RA G +
Sbjct: 358 SKPEKSKKKKGKKVDGEYGVSRGVDFRNVACVLNFDLPTTSRSYVHRVGRTARAGKAGMA 417
Query: 298 VSLVSPDE------------MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRA 345
+S V P + K E++ + + ++++ I P+ VE RYRA
Sbjct: 418 LSFVVPVKEVGKHKTATNPGAKRDEKVLARIVKSQSKNGFEIKPYQ-FDMTQVEGFRYRA 476
Query: 346 EDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLR 405
ED ++VT A+RE+R ++L+NEI+NSEKLK FE NP+DL L+HDK+L S L+
Sbjct: 477 EDAFRAVTSAAIREARIRELKNEIMNSEKLKRFFEENPQDLASLRHDKELHPAKVQSQLK 536
Query: 406 DVPDYLL 412
VPDYLL
Sbjct: 537 RVPDYLL 543
>gi|443924692|gb|ELU43680.1| ATP-dependent RNA helicase DBP9 [Rhizoctonia solani AG-1 IA]
Length = 617
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 176/461 (38%), Positives = 247/461 (53%), Gaps = 77/461 (16%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V + + +A PD+++ATP + L L S V+DEAD
Sbjct: 118 IKAVNIAGGASGYTQKLIIAEKPDLIVATPSRLLALLRVKALSLSSLESL----VIDEAD 173
Query: 73 LLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
L+LSYG+++D+K + +P+ Q LMSAT + DV+ LK + IL L E K
Sbjct: 174 LILSYGHDEDVKQILSGGHLPKLYQTFLMSATMTKDVETLKGIA-----ILKLEED---K 225
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
DE N+ Q+ + CSE DK L +LKL+LV+ K LIF N +D +R+KLFLE+F IK
Sbjct: 226 DEA--ANLTQYAVKCSEVDKFLLTYVILKLKLVKGKCLIFVNDVDRGYRVKLFLEQFSIK 283
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE---------------- 234
S +LN+ELP NSR HI++EFN G++DY+IATD+T K +DQ +
Sbjct: 284 SCVLNSELPLNSRFHIVQEFNKGVYDYIIATDETGGKHEDQDTDDEKEAEEEEVGSEAEA 343
Query: 235 -GG----------------------------HVDSRK-SKKHPKAKLDSEFGVVRGIDFK 264
GG +S+K SKKH AK D EFGV RGIDF
Sbjct: 344 EGGEDLITTEPTEAGEAGPSNPPPKRKRAPPQPESQKPSKKHRTAKKDKEFGVSRGIDFV 403
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 324
+V V+NF++P+++ Y HR+GRT RA +G ++S V P E F + K D
Sbjct: 404 DVACVLNFDLPRSSRAYTHRVGRTARAGRSGMALSFVVPKEE--FGKDKVLSCASSERDE 461
Query: 325 NIIAPFP-------------LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
+ A + VE+ RYR ED ++VTK AVRE+R ++L+ E+LN
Sbjct: 462 IVFARIEKEQGARGSKVKDYVFDMAQVEAFRYRMEDALRAVTKSAVREARVKELKTELLN 521
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
SEKLK HFE NP DL+ ++HDK L +H++ VP YL+
Sbjct: 522 SEKLKTHFEENPLDLEYIRHDKSLHPTRVQAHMKHVPKYLM 562
>gi|336465803|gb|EGO53968.1| hypothetical protein NEUTE1DRAFT_148439 [Neurospora tetrasperma
FGSC 2508]
gi|350287366|gb|EGZ68613.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 676
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 169/439 (38%), Positives = 255/439 (58%), Gaps = 41/439 (9%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A C +Q +LT ++ + LR+ LA PD++++TP + +G L
Sbjct: 190 AFSAFCTKDIQ--SAKLTDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALSIAK--- 244
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRG-CQCLLMSATSSSD-VDKLKKLILHNPY 119
L+ LVLDEADL+LSYGY++D++ ++ +P+G Q +MSAT SD +D LK NP
Sbjct: 245 -LQYLVLDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSATLVSDELDTLKGFFCRNPT 303
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
+L L E +DE + QF++ C E DK L + KL+L++ L+F ID A+R
Sbjct: 304 MLDLKEEFSNEDE----KLTQFYVKCGEDDKWLISYLIFKLQLIKGPCLVFVADIDRAYR 359
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----------TQTKE 228
LKLF E+F I+S +LN+ELP N+R+ I+EEFN G++D +IA+D+ + KE
Sbjct: 360 LKLFFEQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERSEVFLEDEKTEEKKE 419
Query: 229 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
+ + G K K + D E+GV RGIDFKNV VINF+MP +++ Y+HRIGRT
Sbjct: 420 EQGEKKEGEEKKNGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDMPTSSSSYIHRIGRT 479
Query: 289 GRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLA 334
RA G ++S+V P ++ F + K +D ++A P+
Sbjct: 480 ARAGRAGIALSMVVPHDL--FGKHKPTSIKQCEKDEKVLAKVMRQQAKLNRKLEPYN-FN 536
Query: 335 QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD 394
++ +E+ RYR D ++VTK+A+RE+R ++LR E+L SE LK +FE NP +L L+HD +
Sbjct: 537 KDQMEAFRYRMNDALRAVTKVAIREARTRELRQELLRSETLKRYFEENPHELSHLRHDGE 596
Query: 395 L-SKKPPASHLRDVPDYLL 412
L +K +HL+ VPDYLL
Sbjct: 597 LGTKMRQQAHLKHVPDYLL 615
>gi|328710486|ref|XP_001948002.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Acyrthosiphon pisum]
Length = 546
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 151/410 (36%), Positives = 250/410 (60%), Gaps = 20/410 (4%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
+K V ++ + + + L PPD+++ATP + LQ K+ + L+ LV+DEA
Sbjct: 110 VKCVDISDQIDMKEQQPLLNIPPDVIVATPA-----RALLHLQGKNMTLKKLQTLVVDEA 164
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+ S+G+E+++K + +P+ Q +L SAT S DV LKKL+L N IL L E D
Sbjct: 165 DLVFSFGFEEEIKEVIKFLPKTYQAVLASATLSEDVMALKKLLLRNAVILKLQE----PD 220
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ + ++ E DK + + + KL+LV+ K ++F N++D ++LKLFLE+FG+ +
Sbjct: 221 LAPLSQLTHYKLNAEEEDKAVILYCIFKLKLVKGKTIVFVNSVDKCYKLKLFLEQFGVHT 280
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN+ELP + R H + +FN ++D ++A+D+ K D+ E + K +KH
Sbjct: 281 CVLNSELPASCRCHTINQFNDNIYDIILASDE---KFLDEEHEITSTSTNK-RKH----- 331
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D EF + RGIDF+ V VINF+ PQ+ Y+HR+GRT R N G ++S ++ E+ + ++
Sbjct: 332 DKEFSIARGIDFQFVSIVINFDFPQDIYSYIHRVGRTARGKNKGTAISFLNIKELNLLKD 391
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
++ ++ +E+++I F + VE RYRA+D ++VTKIAVRE+R +++++E+LN
Sbjct: 392 VEDYIKQGISEENDIFQDFNFKLEE-VEGFRYRAKDAWRAVTKIAVREARLKEIKSEMLN 450
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
S+KLK +F+ NP+DL L+HDK L H+ DVPDY++ +E K
Sbjct: 451 SKKLKRYFQENPRDLLSLRHDKALHTVKLQDHMSDVPDYMVPTSLKEYIK 500
>gi|345568976|gb|EGX51845.1| hypothetical protein AOL_s00043g579 [Arthrobotrys oligospora ATCC
24927]
Length = 621
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 174/504 (34%), Positives = 274/504 (54%), Gaps = 59/504 (11%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
Q+ V + ++ S ++ L P IVI+TP +T L +SLK LV+DEA
Sbjct: 130 QITAVNIARNISDSIQQSLLLSHPKIVISTPSRAAIHFNTETLSL----ESLKYLVIDEA 185
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+LSYG+E+D++ LS +P+G Q LMSAT + DV+ L+KL +P++ P+ +
Sbjct: 186 DLILSYGHENDMQVLSGALPKGIQTFLMSATLTDDVEGLQKLFCRHPFVYK-PDAKEEDG 244
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ V+QF+IS E K L + + KL+L++ K++IF +D +RL+LFLE+FGI++
Sbjct: 245 ADGAEVVKQFYISTGEDTKFLLLYVIFKLKLIKGKSIIFVADVDRCYRLRLFLEQFGIRA 304
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT----------------------KEK 229
+LN+ELP NSRLHI++EFN +++ +IATD+ + ++
Sbjct: 305 CVLNSELPVNSRLHIVQEFNKNVYEIIIATDENEIMGDEEEEEEDDDDEVEEGQAAGEDG 364
Query: 230 DQSDEGGHVDSRKSKKHPKA---------KLDSEFGVVRGIDFKNVHTVINFEMPQNAAG 280
D + EG + K K K D+E+GV RG+DF+NV V+NF++P +
Sbjct: 365 DTTMEGMESEGNPPPKKKKKSKRKSSTHRKRDTEYGVSRGVDFQNVTCVLNFDLPVTSKS 424
Query: 281 YVHRIGRTGRAYNTGASVSLVSPDEM----------------KIFEEIKSFVGDDENEDS 324
Y+HRIGRT RA N+G ++S P + K+ E IK + +
Sbjct: 425 YMHRIGRTARAGNSGMALSFYVPKPLYGKHRPTSVASSVKDEKVLERIKK----QQAKLG 480
Query: 325 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 384
+ P+ +E+ RYR +D ++VTK+AV+ +R ++LR E++ SEKLK HFE NP+
Sbjct: 481 RELKPYN-FDMKQLEAFRYRMDDALRAVTKVAVQNARMKELRAELVASEKLKRHFEENPE 539
Query: 385 DLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRK 444
DL L+HD+++ H++ VP+YLL +A M ++ K S R+ R K
Sbjct: 540 DLRHLRHDREIKVVRVQQHMKRVPEYLLGKG--KAAGMGLNKGGSVPFKVGSSRKTARGK 597
Query: 445 FRKSDPLKSFSAEPTKRAGKGRMK 468
++ +P K GKGR K
Sbjct: 598 GKQKGKKVGKRKDPLKSFGKGRKK 621
>gi|417402574|gb|JAA48132.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 545
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/403 (40%), Positives = 238/403 (59%), Gaps = 21/403 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L+ S DSL++LV+DEAD
Sbjct: 113 IRVANVSAAEDSASQRAVLMEKPDVVVGTPS---RILNHLQQDSLKLRDSLELLVMDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P+ +QQF + C E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPEQLQQFQVVCDMEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPA 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKHRGTGPKGDR 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P + Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPSPEAYIHRAGRTARANNPGIVLTFVLPTEQSQL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + D + + P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELL--DGETGAPALLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLV 497
>gi|397467114|ref|XP_003846141.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56 [Pan paniscus]
Length = 547
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 177/447 (39%), Positives = 254/447 (56%), Gaps = 31/447 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 170 LXFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVICETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 338 ASDLEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHL 397
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 398 GKIEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 454
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
L+SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 455 LHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPH 508
Query: 430 MGNK--NSSRRQGPRRKFRKSDPLKSF 454
K +SS R+ R K +PL+SF
Sbjct: 509 KKRKKLSSSCRKAKRAK--SQNPLRSF 533
>gi|390356945|ref|XP_790864.3| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56-like [Strongylocentrotus purpuratus]
Length = 559
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 175/467 (37%), Positives = 269/467 (57%), Gaps = 49/467 (10%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++K ++ + S R L PDIV+ TP + L+ ++ S +SL++LV+DEA
Sbjct: 114 EIKCADVSGQVDLSAQRPLLMERPDIVLGTPS---RILAHIQAKNLSLQNSLEMLVIDEA 170
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+ S+G+E D++AL + P+ Q +LMSAT S DV LKKL+LHNP L L E
Sbjct: 171 DLVFSFGHEADMRALLSHFPKIYQAILMSATLSEDVKTLKKLVLHNPITLKLAE------ 224
Query: 132 EVIPK--NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+P+ + Q+ + C E DK L I TLLKL+L++ K +IF N+ID +RLKL+LE+F +
Sbjct: 225 SQLPEADRLSQYQVRCIEEDKYLLIYTLLKLKLIRGKTIIFVNSIDRCYRLKLYLEQFSV 284
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+LN+ELP NSR HI+ +FN GL+D ++A++++ + + DE + ++ K +
Sbjct: 285 PVCLLNSELPVNSRCHIVNQFNTGLYDIIVASEESSLFDGGKRDEAE--ERKEKKGKGQK 342
Query: 250 KLDSEFGVVRGIDFKNVHTVINF---EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
D E+GV RGIDF N V NF ++ N + I RT R G ++S V+ E
Sbjct: 343 XKDKEYGVSRGIDFHNQQNVNNFMFDDIHLNIKMLL-LICRTARGEKMGTALSFVNEQEQ 401
Query: 307 KIFEEI-KSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL 365
+ + + + +GDD + +I P+ + +E RYRA+D ++VTK+AVRE+R +++
Sbjct: 402 DLLDNVEQELIGDD---GTPLIKPYQ-FKMSEIEGFRYRAKDAMRAVTKVAVREARVKEI 457
Query: 366 RNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKL 425
+ EI NS+KLKA+FE NP+DL LL+HDK L + S L++VP+Y++ K
Sbjct: 458 KQEIFNSKKLKAYFEDNPRDLQLLRHDKILQRAKVHSDLKNVPEYVVP----------KA 507
Query: 426 ARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKREGR 472
R + +SRR+ P+R T GKG KRE R
Sbjct: 508 LRGTI--PTTSRRKAPKR---------------TAADGKGVQKRESR 537
>gi|328778265|ref|XP_391920.3| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 1
[Apis mellifera]
Length = 552
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 265/476 (55%), Gaps = 43/476 (9%)
Query: 5 ELCKGQVQLKVVQLTSSM----------PASDLRAA---LAGPPDIVIATPGCMPKCLST 51
ELCK Q+ ++ LT P DL A LA PDIV++TP + + L
Sbjct: 101 ELCK-QIHDVIISLTIKCSREVKAIDISPQVDLSAQKLLLAEKPDIVVSTPSKLLQHLKA 159
Query: 52 GVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK 111
++ K SL+ L++DEADL+ S+GYE+++K + +P Q +L SAT S DV LK
Sbjct: 160 KNMKLKQ---SLETLIIDEADLIFSFGYENEIKDILNYLPILYQAVLASATLSEDVITLK 216
Query: 112 KLILHNPYILTLPEVGDVKDEVIP-KNVQQFWISCSERDKLLYILTLLKLELVQKKALIF 170
KL+L +P IL L E + P + + ++ E DK + LLKL L++ K +IF
Sbjct: 217 KLVLRHPVILKLEEAP-----LAPLSQLSHYSLAAEENDKAAILCALLKLRLIRGKTIIF 271
Query: 171 TNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKD 230
NT+D ++LKLFLE+FGI + +LN+ELP SR + +FN+G +D +IA+D+
Sbjct: 272 VNTVDRCYKLKLFLEQFGIATCVLNSELPAVSRCRAVTQFNSGTYDIIIASDE------- 324
Query: 231 QSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGR 290
+S E H+ K K K D EFG+ RGIDF+ V V NF+ P + Y+HR GRT R
Sbjct: 325 KSLEEPHIAKVKRGKRKK---DKEFGIARGIDFQFVSNVFNFDFPPDINSYIHRAGRTAR 381
Query: 291 AYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI-IAPFPLLAQNAVESLRYRAEDVA 349
N G +SLVS E I E+++ + N D + F L VE RYRA+D
Sbjct: 382 GKNDGTVLSLVSIRERPILEDVEVELKQCYNCDKLLKTYEFKL---EEVEGFRYRAKDAW 438
Query: 350 KSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPD 409
K+VT+IAVRE+R ++++ E+LN +KLK++FE NP+DL L+ DK L HL+DVPD
Sbjct: 439 KAVTRIAVREARLKEIKQEVLNCQKLKSYFEDNPRDLQSLRQDKALHTVKLQPHLKDVPD 498
Query: 410 YLLDAKTQEAC----KMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKR 461
Y++ + K K R A +K ++ + R R S+PL S + K+
Sbjct: 499 YIIPPTLKRLVNTGKKKKKFNREATTSKPTATQSKYRA--RASNPLMSLQLQNLKK 552
>gi|169600249|ref|XP_001793547.1| hypothetical protein SNOG_02955 [Phaeosphaeria nodorum SN15]
gi|118578053|sp|Q0UZ59.1|DBP9_PHANO RecName: Full=ATP-dependent RNA helicase DBP9
gi|111068566|gb|EAT89686.1| hypothetical protein SNOG_02955 [Phaeosphaeria nodorum SN15]
Length = 597
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 177/460 (38%), Positives = 266/460 (57%), Gaps = 44/460 (9%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+A LA PDIVIATP ++TG L + LV+DE DL++ YG+++DL ++
Sbjct: 160 KAKLADNPDIVIATPARASANINTGALAVTELAH----LVVDEGDLVMGYGFKEDLDQIA 215
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
IP+G Q LMSAT +++V+ L L+ ++P +L L ++ KD K V+Q+ I C+E
Sbjct: 216 QNIPKGVQMFLMSATLNTEVESLGSLLCNDPVVLKLDDLD--KDS---KRVKQYVIKCAE 270
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+K L I + KL L++ K ++F D ++R+KLFLE+FGIKS +LN+ELP SRLHI+
Sbjct: 271 EEKFLLIYAMFKLGLIKGKTIVFVGDTDRSYRVKLFLEQFGIKSCVLNSELPLASRLHIV 330
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK----AKLDSEFGVVRGIDF 263
EEFN +++ LIA+D+T+ + D + KK PK AK DS GV RGIDF
Sbjct: 331 EEFNKNIYNILIASDETEILGSQKK-----ADESRPKKKPKTDKEAKNDS--GVSRGIDF 383
Query: 264 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE- 322
NV V+NF+ P Y HRIGRT RA +G ++S + P + + +F G + +E
Sbjct: 384 LNVSCVLNFDFPATYKSYFHRIGRTARAGKSGTAISFIIPKDKYRKHKSTTFAGCENDEE 443
Query: 323 -----DSNIIAPFPLLAQN----AVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 373
+ + A L N +E RYR D +SVT+IA+RE+R +++R E+ S+
Sbjct: 444 VLKKVEKHQEAGQKLENYNFDMKRLEPFRYRFGDALRSVTRIAIREARIKEIRLELSKSQ 503
Query: 374 KLKAHFEVNPKDLDLLKHDKDLSKKPPAS---HLRDVPDYLLDAKTQEACKM--VKLARA 428
KL +FE NP+ L L+HD+ L+ PA HL+ VPDYLL +++ + V L
Sbjct: 504 KLSRYFEENPEALAHLRHDQTLNH--PARIQPHLKHVPDYLLPGGSRKPADVGFVGLNVP 561
Query: 429 AMGNKNSSRRQGPR--RKFRKSDPLKSFSAEPTKRAGKGR 466
+ + + +G + R+ K DPLK+F+A GKG+
Sbjct: 562 RVNKRQYVKGKGRKVVRRNGKVDPLKTFNAR-----GKGK 596
>gi|328860912|gb|EGG10017.1| hypothetical protein MELLADRAFT_34088 [Melampsora larici-populina
98AG31]
Length = 640
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/461 (36%), Positives = 260/461 (56%), Gaps = 64/461 (13%)
Query: 6 LCKG---QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
LC G + ++V+ L++ + + PD++++TP + L +G L + S
Sbjct: 124 LCNGMGSEAIIEVLNLSAPDASGSKKRNSGSSPDVLVSTPAKLLSKLRSGSLNLSNLS-- 181
Query: 63 LKILVLDEADLLLSYGYE-DDLKAL----------SAVIPRGCQCLLMSATSSSDVDKLK 111
LVLDEADL+LSYG+ DD+K++ + P Q LMSAT + +V +LK
Sbjct: 182 --FLVLDEADLILSYGHSSDDIKSILSGSGNADGITWRFPNFYQSFLMSATMTEEVAQLK 239
Query: 112 KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS-ERDKLLYILTLLKLELVQKKALIF 170
L+L +P IL + E E KN+ QF I + E+DK L + + +L L++ K LIF
Sbjct: 240 NLVLRDPEILMVKET-----ESELKNLTQFSIGITNEQDKFLLVYVIFRLRLIKGKGLIF 294
Query: 171 TNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD---DTQTK 227
N+ D +++LKLFLEKFGI+S +LN+ELP NSR H ++EFN G+F+YLIATD D++
Sbjct: 295 VNSTDKSYQLKLFLEKFGIRSGVLNSELPFNSRYHAVQEFNRGVFNYLIATDESGDSRDD 354
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDS-------------------------EFGVVRGID 262
E +Q+D+ S + P A++++ ++GV RG+D
Sbjct: 355 EDEQADQSVEEASSLQESKPDAEVETTVSEKSSKKRKRKESAKDRFADRSQDYGVSRGVD 414
Query: 263 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD---------EMKIFEEIK 313
F +V VINF++P +A Y HRIGRT RA TG S+S V + ++ +++
Sbjct: 415 FVDVGCVINFDIPPSARCYTHRIGRTARAGRTGISLSFVRSTASTSTQKNVDQQVTKDLN 474
Query: 314 SF--VGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
++ + + + + + I + VE RYR +D +SVTK A+RE+R ++++NE++N
Sbjct: 475 TWQRIEEQQRQRGSEIREYK-FDMTQVEGFRYRMQDGLRSVTKAAIREARIKEIKNEVMN 533
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
SEKLK+HFE NP DL LKHDK L H++ VP YL+
Sbjct: 534 SEKLKSHFEANPNDLAFLKHDKPLHPTRIQPHMKHVPSYLV 574
>gi|383862497|ref|XP_003706720.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Megachile rotundata]
Length = 547
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 175/458 (38%), Positives = 258/458 (56%), Gaps = 27/458 (5%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
M+L C +V VV ++ + + L PDIVI TP + + L ++ K
Sbjct: 111 MSLTIKCSREVN--VVDVSPQLELIAQKPLLNQKPDIVIGTPSRLLQHLKANNMKLKH-- 166
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
SL+ L++DEADL+ S+GYED++K L + +P Q L SAT S DV LKKL+LH P
Sbjct: 167 -SLETLIIDEADLVFSFGYEDEIKNLLSYLPTVYQAALASATLSEDVLTLKKLVLHRPVT 225
Query: 121 LTLPEVGDVKDEVIP-KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
L L E + P + + ++ E DK + LLKL LV+ K +IF NT+D ++
Sbjct: 226 LKLEE-----PPLAPLSQLSHYSLAAEENDKAAILYALLKLNLVRGKTIIFVNTVDRCYK 280
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239
LKLFLE+FGI + +LN+ELP SR + +FN+G +D +IA+D ++S E H+
Sbjct: 281 LKLFLEQFGIPTCVLNSELPALSRCRAVSQFNSGTYDIIIASD-------EKSLEEPHII 333
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
K K K D E GV RGIDF+ V VINF+ P + Y+HR GRT R N G ++S
Sbjct: 334 KVKRGKRKK---DKESGVARGIDFQFVSNVINFDFPPDVNSYIHRAGRTARGKNQGTALS 390
Query: 300 LVSPDEMKIFEEIKSFVGDDENEDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 358
+S E + E+++S + N D+ F L VE RYRA+D K+VT+IAVR
Sbjct: 391 FISIRERPLLEQVESELKHCYNRDALFKTYQFKL---EEVEGFRYRAKDAWKAVTRIAVR 447
Query: 359 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQE 418
E+R ++++ E+LN +KLK++FE NP+DL L+ DK L HL+DVP+Y++ +
Sbjct: 448 EARLKEIKQEVLNCDKLKSYFEDNPRDLQSLRQDKALHTVKLQPHLKDVPEYIVPPTLKR 507
Query: 419 ACKMVKLARAAMGNKNSSRRQGPRRKF--RKSDPLKSF 454
+ K R + +S+ + K+ R S+PL S
Sbjct: 508 LVGIGKRKRKFNRDAATSKPTATQLKYKARASNPLISL 545
>gi|344293830|ref|XP_003418623.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Loxodonta
africana]
Length = 545
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 171/449 (38%), Positives = 253/449 (56%), Gaps = 35/449 (7%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + LS + DSL++LV+DEAD
Sbjct: 112 IRVADVSAAEHSASQRAVLIEKPDVVVGTPS---RILSHLQQDNLKLHDSLELLVMDEAD 168
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 169 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 224
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 225 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPA 284
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD + G + K +A
Sbjct: 285 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVLGAPVKGKHRG-----RGAKGDRAS- 338
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 339 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARASNPGVVLTFVLPAEQAHLGK 398
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L
Sbjct: 399 IEELLSGENG--VPVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEVKEELLR 455
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL +VPDYL+ + K
Sbjct: 456 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPPTLRGVVHPHK------- 508
Query: 432 NKNSSRRQGPRRKFRK------SDPLKSF 454
+R+ P +RK +PL+SF
Sbjct: 509 -----KRKKPPSSYRKVKKGKTQNPLRSF 532
>gi|427795535|gb|JAA63219.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 532
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 172/468 (36%), Positives = 254/468 (54%), Gaps = 43/468 (9%)
Query: 5 ELCKGQVQLKVVQLTSSM-------PASDL---RAALAGPPDIVIATPGCMPKCLSTGVL 54
ELC GQ+ V QL+ + +DL R LA P IV+ TP + L G L
Sbjct: 93 ELC-GQIARCVSQLSGTWLRCVDVSGTADLAIQRPLLAERPAIVVGTPSRILAHLKAGHL 151
Query: 55 QSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLI 114
K L++LV+DEADL+LS+G+E DL L +P CQ +L SAT S +V LK+L
Sbjct: 152 TLK-----LEMLVIDEADLVLSFGHEQDLNELLTRLPNKCQTILTSATLSPEVLNLKRLA 206
Query: 115 LHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTI 174
L N L L E E + + Q+ I C E DK + L KL L+ K LIF T+
Sbjct: 207 LRNAVTLKLQE-----GEQDQQRLAQYVIRCEEDDKFALLCALFKLRLIVGKTLIFVTTV 261
Query: 175 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 234
D F +KLFLE+FG++ +LN+ELP SR IL +FN G ++ ++A+D ++
Sbjct: 262 DRCFVVKLFLEQFGVRCCVLNSELPLASRALILNQFNEGRYEIMVASD----------EK 311
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
G V + KK K D E+GV RG+DF+NV VIN + P Y HR+GRT R
Sbjct: 312 GAEVQDKAPKKSKKRNQDPEYGVCRGLDFQNVANVINLDFPATVQAYQHRVGRTARGDRK 371
Query: 295 GASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTK 354
G ++SLV E + E ++ + + + P+ L +E RYR++D ++VT+
Sbjct: 372 GTALSLVKDREAHLLEAVQKALPE------GTLKPY-LFRMEEIEPFRYRSKDAFRAVTR 424
Query: 355 IAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA 414
IAVRE+R ++++ E+L+S+KL++ FE NP++ LL+HDK L HL+ PDY++
Sbjct: 425 IAVREARLKEIKTEMLSSQKLQSFFEENPRERQLLRHDKALHIIKHQPHLKHCPDYIIPP 484
Query: 415 KTQEACKMVKLARAAMGN-KNSSRRQGPRRKF----RKSDPLKSFSAE 457
Q + +A K R+ RK+ R++DPL++FS +
Sbjct: 485 TLQRTLQKEGATKAPQQPVKRPMTREAKNRKYGKKPRRNDPLQTFSCD 532
>gi|224003339|ref|XP_002291341.1| dead-box RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220973117|gb|EED91448.1| dead-box RNA helicase, partial [Thalassiosira pseudonana CCMP1335]
Length = 529
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 177/433 (40%), Positives = 257/433 (59%), Gaps = 28/433 (6%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
A L PDIV+ATP + + +G L K S++ LV+DEADL+LS+GY +D+ +
Sbjct: 118 ALLRDRPDIVVATPAGLVGHVRSGKLNLKR---SVETLVVDEADLILSFGYANDVTEIMK 174
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK-NVQQFWISCSE 147
+P+ CQ LMSAT S ++ LK ++LH+P +L L E +DE N+ QF++
Sbjct: 175 SLPKTCQGFLMSATLSPELHNLKHVVLHSPAVLKLEE----EDEDGGNGNLMQFYLDLPG 230
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+DK L + LKL L++ K L F NTID +RLKLFLE+F I+SA+LNAELP SRL+I+
Sbjct: 231 KDKFLVLYVFLKLGLLKGKGLFFVNTIDGGYRLKLFLEQFHIRSAVLNAELPLRSRLNII 290
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD----SRKSKKHPKAKLDSEFGVVRGIDF 263
E FN G FDYLIATD+ +D H D S K K + + + D E+GV RG+DF
Sbjct: 291 EHFNVGNFDYLIATDEA-------TDMRSHHDGKKKSTKGKSNKRRRRDGEYGVSRGLDF 343
Query: 264 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 323
+ V V+N ++P + Y HRIGRT R G +++LV + EE + EN+
Sbjct: 344 RGVSFVVNVDLPTSPESYTHRIGRTARGGANGVALTLVDGSKD---EEAEMLFQIQENQP 400
Query: 324 SNIIAPFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 382
+ P PL +E RYR ED ++VT++AVRE+RA +++ EILNSE+L++HF+ N
Sbjct: 401 TKSSGPCPLDFDLKEIEGFRYRVEDGTRAVTRVAVRETRAAEVKAEILNSERLQSHFQEN 460
Query: 383 PKDLDLLKHDKDLSKKPPAS-HLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGP 441
P DL LL+HD+ + HL+ VP YLL ++ ++R K S+R
Sbjct: 461 PADLQLLQHDRQATHISKVQDHLKHVPKYLL----PRGMEVADVSRKRRKKKTRSQRMAS 516
Query: 442 RRKFRKSDPLKSF 454
R + + +DPL++F
Sbjct: 517 RARNKDNDPLQNF 529
>gi|398405364|ref|XP_003854148.1| hypothetical protein MYCGRDRAFT_92212 [Zymoseptoria tritici IPO323]
gi|339474031|gb|EGP89124.1| hypothetical protein MYCGRDRAFT_92212 [Zymoseptoria tritici IPO323]
Length = 658
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 191/538 (35%), Positives = 278/538 (51%), Gaps = 96/538 (17%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
C G ++ + +T ++ RA LA PDIVIATP + ++ VL+ + L+
Sbjct: 143 FCAGDIRCE--NITRKEDSAVTRARLADAVPDIVIATPSRACQWINQEVLKV----EDLR 196
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLIL-----HNPY 119
LV+DEADL+LSY Y++DL++L+ +P G Q ++MSAT ++VD L +L P
Sbjct: 197 HLVIDEADLVLSYEYDEDLQSLATSLPTGVQKIMMSATLRAEVDTLTELFFGKEEGAGPT 256
Query: 120 ILTLPEVGDVKDEVIPK-NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
IL L K+E K + QF + +E +K L I + KL+L+ K ++F ID +
Sbjct: 257 ILDLS-----KEEADEKATLAQFTVRTAEDEKFLLIYAIFKLQLITGKVIVFVADIDRCY 311
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD--------------- 223
R+KLFLE+FGI+S +LN+ELP NSRLH++EEFN G++D +IA D+
Sbjct: 312 RVKLFLEQFGIRSCVLNSELPVNSRLHVVEEFNRGVYDIIIAADEGEIIGNEESKGRRKK 371
Query: 224 ---------------------------TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 256
+ +E + V SR +KK +++ D E+G
Sbjct: 372 NNRKAAQQEDADLEDADEQPADDILPPVEDEEAEADSTSATVTSRPAKKPRRSQTDREYG 431
Query: 257 VVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK-SF 315
V RGIDF+ V V+NF++P A Y HRIGRT RA TG ++S P E+ + + K S
Sbjct: 432 VSRGIDFRYVTCVLNFDLPPTAKSYTHRIGRTARAGRTGMALSFHVPAEL--YRKHKPST 489
Query: 316 VGDDENEDSNIIAPFPLLAQNAVE------------SLRYRAEDVAKSVTKIAVRESRAQ 363
+ N+DS + AQ + E RYR D +SVT+IAVRE+R +
Sbjct: 490 IPQCANDDSVLADIIASQAQKSAEVKAWGLDWAKLDGFRYRLADALRSVTRIAVREARTK 549
Query: 364 DLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEAC--- 420
+LR E++ SEKLK HFE NP DL L+HD + HL+ VP+YLL + + A
Sbjct: 550 ELRAELIKSEKLKRHFEENPDDLRHLRHDTESHAVRAQPHLKHVPEYLLPSGGKAAVSKD 609
Query: 421 ---------KMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMKR 469
K +L +A NK R G K + DPL+S +A KGR K+
Sbjct: 610 VGYVGMRRDKENRLRKARAVNKGKGR--GRLAKGKGLDPLRSLNA-------KGRGKK 658
>gi|149236141|ref|XP_001523948.1| hypothetical protein LELG_04761 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013497|sp|A5E572.1|DBP9_LODEL RecName: Full=ATP-dependent RNA helicase DBP9
gi|146452324|gb|EDK46580.1| hypothetical protein LELG_04761 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 606
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 176/498 (35%), Positives = 272/498 (54%), Gaps = 69/498 (13%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLD 69
++ ++ L+S+ L++ L P+I+I+TP + + L + K D ++K L +D
Sbjct: 121 KIGILNLSSNYSDQVLKSLLINKPEIIISTPSKLIQTLEAH--EGKDIIDLSTVKNLTID 178
Query: 70 EADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 127
E DL+LS+GY+DDL+ L + +P + Q LMSAT + D+++LK P IL L +
Sbjct: 179 EVDLILSFGYKDDLQKLESYLPVKKNLQTFLMSATVNDDLNELKAKFCTKPAILKLDD-- 236
Query: 128 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
D+ + QF+ +E DK L + KL L++ K ++F N ID +RLKLFLE+F
Sbjct: 237 ---DQSNNNKLVQFYAKTTEFDKFLLSYVIFKLNLIKGKTIVFVNNIDRGYRLKLFLEQF 293
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK-------------------- 227
GI+ ILN+ELP NSRLHI+EEFN ++ LIATDD +
Sbjct: 294 GIRCCILNSELPINSRLHIVEEFNKNVYHLLIATDDISVEKEEVDEVDEGEEEHEDAADA 353
Query: 228 -EKDQS-------------DEGGHV--DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
EK Q E V + K+KKH +K D E+GV RG+DF+NV V+N
Sbjct: 354 DEKKQQNNNNNNNNHNNNNKEHKEVLKKNEKNKKHS-SKKDKEYGVSRGVDFRNVACVLN 412
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE------------MKIFEEIKSFVGDD 319
F++P + YVHR+GRT RA +G ++S V P++ K E++ + +
Sbjct: 413 FDLPTTSKSYVHRVGRTARAGKSGMALSFVIPEKEVGKHKTASLRSAKKDEKVLNRIVKQ 472
Query: 320 ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHF 379
+ ++ I P+ VE RYRA+D ++VT+ A+RE+R ++L+NE++NSEKLK F
Sbjct: 473 QQKNGFEIKPYQ-FDMKQVEGFRYRADDAFRAVTQTAIREARVKELKNELINSEKLKRFF 531
Query: 380 EVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK---MVKLARAAMGNKNSS 436
+ NP+DL L+HDK+L +HL+ P YLL + K + + +G K
Sbjct: 532 QENPRDLASLRHDKELHPARVQAHLKRTPQYLLPESARLDVKNLGFIPFHKNKVG-KYRK 590
Query: 437 RRQGPRRKFRKSDPLKSF 454
+ +G +++ DPLKSF
Sbjct: 591 KSKGTKKR----DPLKSF 604
>gi|71019617|ref|XP_760039.1| hypothetical protein UM03892.1 [Ustilago maydis 521]
gi|74701244|sp|Q4P7M1.1|DBP9_USTMA RecName: Full=ATP-dependent RNA helicase DBP9
gi|46099832|gb|EAK85065.1| hypothetical protein UM03892.1 [Ustilago maydis 521]
Length = 686
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 188/512 (36%), Positives = 261/512 (50%), Gaps = 94/512 (18%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL- 86
R L+ PD+VIATP L L KS +SL I DEADL+LSYG++ D+K+L
Sbjct: 183 RLLLSEKPDVVIATPSKALNYLQNASLDLKSGMESLAI---DEADLILSYGHDADVKSLL 239
Query: 87 -SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP-KNVQQFWIS 144
+ +P Q LMSAT +SDV KLK L+L NP +L L + DE N+ QF+
Sbjct: 240 GANFLPSHFQSFLMSATMTSDVSKLKGLLLRNPVVLKL----NHDDEAASGSNLVQFYTK 295
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
+E DK L +LKL+L++ KA++F N ++ +RLKLFLEKFG+++ +LNAELP NSR
Sbjct: 296 TTEEDKFLLAYVILKLKLIRGKAILFVNELERGYRLKLFLEKFGLRACVLNAELPINSRY 355
Query: 205 HILEEFNAGLFDYLIATD-----------------------------DTQT--------K 227
I+EEFN G FDY++ATD D Q K
Sbjct: 356 SIVEEFNKGKFDYIVATDEPTGASGNMQDDEGDDEEEDADEREADEVDEQAEDQREAGKK 415
Query: 228 EKDQSDEGGHVDSRKSK--KHPKAKLD-SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHR 284
K G S KSK +H K K SE+GV RG+DF NV VINF++P + Y+HR
Sbjct: 416 RKSSEHAGAETKSNKSKVSQHRKGKNGASEYGVSRGVDFINVSCVINFDLPTSVDSYIHR 475
Query: 285 IGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS-----NIIAPFPLLA----- 334
+GRT R +G ++S V P + ++ + ++S N + LL
Sbjct: 476 VGRTARGGASGTALSFVVPSD-QVGRSKYLYCASTTRDESVFKMLNKPSTISLLGSALQE 534
Query: 335 ----QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 390
++V YR D KS+TK +RE+R ++L+NEIL S KL++HFE +P DL L+
Sbjct: 535 WKYDSSSVAGFHYRVTDTLKSITKALIREARIKELKNEILTSSKLQSHFEDHPDDLAFLQ 594
Query: 391 HDKD-LSKKPPASHLRDVPDYLLDAKTQEACKMVKLA----------------------- 426
HDK L+ + SHL+ VP YL+ K+ K +
Sbjct: 595 HDKALLTSRAQQSHLKHVPQYLVPKIINPGAKLTKSSGSEYKGYVPKNKIKDGANDRKNK 654
Query: 427 ---RAAMGNKNSSRRQGPRRKFRKSDPLKSFS 455
R + KN++ G RK K DPL+ FS
Sbjct: 655 GGKRRSSTGKNTTGAAGKSRK--KVDPLRKFS 684
>gi|301777320|ref|XP_002924074.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Ailuropoda melanoleuca]
Length = 545
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 165/401 (41%), Positives = 239/401 (59%), Gaps = 17/401 (4%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L+ S DSL++LVLDEAD
Sbjct: 113 IRVADVSAAEDSASQRAVLMEKPDMVVGTPS---RVLNHLQQDSLVLRDSLELLVLDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P ++QF + C +E DK L + LLKL LV+ K+L+F NT+D ++RL+LFLE+F I +
Sbjct: 226 PGPDQLRQFQVVCQTEEDKFLLLYALLKLSLVRGKSLLFVNTLDRSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD E + G R SK +
Sbjct: 286 CVLNGELPLCSRCHIISQFNQGFYDCVIATD----AEVLGAPVKGKRRGRGSKGDRAS-- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 340 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPTEQSHLHT 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEELLRGENG--APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
SE+LK +FE NP+DL LL+HD L HL VPDYL+
Sbjct: 457 SERLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLV 497
>gi|344300058|gb|EGW30398.1| hypothetical protein SPAPADRAFT_157367 [Spathaspora passalidarum
NRRL Y-27907]
Length = 578
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 178/475 (37%), Positives = 265/475 (55%), Gaps = 47/475 (9%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCL---STGVLQSKSFSDSLKILVL 68
++ ++ L+S+ L + L P+I+I+TP + + L S G++ + S+ L +
Sbjct: 117 KINILNLSSNYSDQVLNSLLINKPEIIISTPAKLIQTLEKNSKGLIDLSTVSN----LTI 172
Query: 69 DEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 126
DE DL+LS+GY DDLK L + +P + Q LMSAT + +++ LK P IL L +
Sbjct: 173 DEVDLVLSFGYLDDLKKLESYLPIKKNLQTFLMSATINEELNDLKMRYCTKPAILKLNDE 232
Query: 127 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 186
K ++ Q++ +E DK L + KL L++ K +IF N ID +RLKL+LE+
Sbjct: 233 TAEKQSLV-----QYYAKTTEFDKFLLCYVIFKLNLIKGKTIIFVNNIDRGYRLKLYLEQ 287
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ--TKEK-----------DQSD 233
FGI+ ILN+ELP NSRLHI+EEFN ++ LIATD+T T EK +Q
Sbjct: 288 FGIRCCILNSELPINSRLHIVEEFNKNVYHLLIATDETNDFTVEKEEDSEGEREREEQEQ 347
Query: 234 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 293
K K AK DSE+GV RG+DF+NV V+NF++P + Y+HRIGRT RA
Sbjct: 348 AQEEKKESKKSKKKGAKKDSEYGVSRGVDFRNVACVLNFDLPTTSKAYIHRIGRTARAGK 407
Query: 294 TGASVSLVSPDEMKIF--------------EEIKSFVGDDENEDSNIIAPFPLLAQNAVE 339
+G ++S + P +K F E++ + ++ + I P+ VE
Sbjct: 408 SGMALSFIIP--LKEFGKHKIANLATAKKDEKVLRRIIKQQSRNGFEIKPYQ-FDMKQVE 464
Query: 340 SLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 399
RYRAED ++VT+ +VRE+R ++L+NE++NSEKLK FE NP+DL L+HDK+L
Sbjct: 465 GFRYRAEDAFRAVTQTSVREARVKELKNELINSEKLKRFFEENPQDLATLRHDKELHPTR 524
Query: 400 PASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
S L+ VP YLL + K + +KN + R+ +KSDPLK+F
Sbjct: 525 IQSQLKRVPQYLLPESARSDPKNIGFVPF---HKNKVHKNRKRKSTKKSDPLKTF 576
>gi|325191602|emb|CCA25813.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 654
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 185/495 (37%), Positives = 273/495 (55%), Gaps = 62/495 (12%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L+ C+ ++ L + + S +A L PDI+I+TPG + L G +
Sbjct: 115 LMHYCRNRISLLAL---TGQSMSIQQALLRDAPDILISTPGRIVSHLEAGYFDPAN---- 167
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
+ L++DEADL+LS+G + DL ++ +P+ Q L MSAT S D+ LKK + HN IL
Sbjct: 168 IHSLIIDEADLILSFGSKSDLCSIFDHLPKAIQILCMSATLSPDLRALKKSVFHNAAILK 227
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
L E EV +QQF++ +DK L + LLKL L+ K L F N A+RLKL
Sbjct: 228 LEE------EVTDGKLQQFYLRIPPKDKELLLYALLKLGLLHGKILFFVNVTASAYRLKL 281
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE-------------- 228
F E+F IKSA+LNAE+P NSR HIL+E+N GLFD LIATD++ E
Sbjct: 282 FFEQFHIKSAVLNAEMPHNSRKHILQEYNRGLFDNLIATDESVEAEDEDVPLDDEDVPLD 341
Query: 229 -------------KDQSDEGGHVDS-----RKSKKHPKA-----KLDSEFGVVRGIDFKN 265
+D+SDE + D +K P++ + D+ +GV RG+DF
Sbjct: 342 DEDVPLEVEDVPQEDESDEESNDDQLGDDFNHDQKVPESTNKSRQQDALYGVSRGVDFSG 401
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD---EMKIFEEIKSFVGDDENE 322
V V+N + PQ+A Y+HRIGRT R G ++S+VS D E K +++++
Sbjct: 402 VKFVVNVDFPQSARSYIHRIGRTARGNECGTALSIVSSDCQKEAKTLDKLQAKQQPLITP 461
Query: 323 DSNII-APFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 380
+++I P PL + ++ RYR EDV ++VT+IAVRE++ D++ EILNSEKL +HFE
Sbjct: 462 SNDLIKQPAPLSFDLHEIDRFRYRVEDVQRAVTRIAVREAQLADIKKEILNSEKLASHFE 521
Query: 381 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQG 440
NP+DL++L+HDK + K HL +PDYL+ Q V ++ + +++ G
Sbjct: 522 ANPRDLNVLQHDKTIGKARIQPHLATIPDYLVPIGLQ-----VAPSKPTRKKQRTTKTNG 576
Query: 441 PRRKFRKSDPLKSFS 455
RR +DPL SF+
Sbjct: 577 KRRT--DNDPLHSFT 589
>gi|347300354|ref|NP_001231472.1| probable ATP-dependent RNA helicase DDX56 [Sus scrofa]
Length = 546
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 171/450 (38%), Positives = 255/450 (56%), Gaps = 22/450 (4%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PDIV+ TP + L L+ DSL++LV+DEAD
Sbjct: 113 IRVANVSAAEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLK---LRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPA 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN GL+D +IATD + K ++
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGLYDCVIATDAEVLGPPVKGKGKQRGKGPKGER----AS 341
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 342 DPEAGVARGIDFHHVCGVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGK 401
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + + + F + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 402 IEELLSGENGAPALLPYQFRM---EEIEGFRYRRRDAMRSVTKQAIREARLKEIKEELLH 458
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL +VPDYL+ + + K + +
Sbjct: 459 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVPPALRGLVRPHKKRKKPLS 518
Query: 432 NKNSSRRQGPRRKFRKSDPLKSFSAEPTKR 461
K + +K + +PL+SF KR
Sbjct: 519 AKKA-------KKVKTQNPLRSFKHRGEKR 541
>gi|444517809|gb|ELV11805.1| Niemann-Pick C1-like protein 1 [Tupaia chinensis]
Length = 1837
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 166/409 (40%), Positives = 240/409 (58%), Gaps = 27/409 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ A+ RA L PDIV+ TP + LS S DS+++LV+DEAD
Sbjct: 114 IRVANVSAAEDAASQRAVLMEKPDIVVGTPS---RILSHLQRDSLKLRDSMELLVVDEAD 170
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 171 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 226
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLEL------VQKKALIFTNTIDMAFRLKLFLE 185
P +QQF + C +E DKLL + L L V+ K+L+F NT++ ++RL+LFLE
Sbjct: 227 PGPDQLQQFQVICETEEDKLLLLFFFLLLYALLKLSLVRGKSLLFVNTLERSYRLRLFLE 286
Query: 186 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK 245
+F I S +LN ELP SR HI+ +FN G +D +IATD G V ++ +
Sbjct: 287 QFSIPSCVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRQGR 338
Query: 246 HPKAK--LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
PKA D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P
Sbjct: 339 GPKANKASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGTVLTFVLP 398
Query: 304 DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQ 363
E +I+ +G + + ++ P+ + +E RYR D +SVTK A+RE+R +
Sbjct: 399 VERPHLNKIEELLGGENR--APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLK 455
Query: 364 DLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+++ E+L+SEKLK +FE NP+DL LL+HD L HL VP+YL+
Sbjct: 456 EIKEELLHSEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPEYLV 504
>gi|281340691|gb|EFB16275.1| hypothetical protein PANDA_013325 [Ailuropoda melanoleuca]
Length = 496
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 165/400 (41%), Positives = 238/400 (59%), Gaps = 17/400 (4%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + L+ S DSL++LVLDEAD
Sbjct: 113 IRVADVSAAEDSASQRAVLMEKPDMVVGTPS---RVLNHLQQDSLVLRDSLELLVLDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P ++QF + C +E DK L + LLKL LV+ K+L+F NT+D ++RL+LFLE+F I +
Sbjct: 226 PGPDQLRQFQVVCQTEEDKFLLLYALLKLSLVRGKSLLFVNTLDRSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD E + G R SK +
Sbjct: 286 CVLNGELPLCSRCHIISQFNQGFYDCVIATD----AEVLGAPVKGKRRGRGSKGDRAS-- 339
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E
Sbjct: 340 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPTEQSHLHT 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEELLRGENG--APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 411
SE+LK +FE NP+DL LL+HD L HL VPDYL
Sbjct: 457 SERLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYL 496
>gi|331232346|ref|XP_003328835.1| hypothetical protein PGTG_10136 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307825|gb|EFP84416.1| hypothetical protein PGTG_10136 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 668
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 181/477 (37%), Positives = 254/477 (53%), Gaps = 75/477 (15%)
Query: 1 MALIELCKG---QVQLKVVQLTSSMPASDLR-------AALAGPPDIVIATPGCMPKCLS 50
+A+ LCKG + ++++ L SS R + + PPDI+++TP + L
Sbjct: 120 LAISSLCKGLGNENAIEIINLASSDSKRSKRKHAQVDQSYTSNPPDIIVSTPARLLDRLR 179
Query: 51 TGVLQSKSFSDSLKILVLDEADLLLSYGYE-DDLKAL----------SAVIPRGCQCLLM 99
T + + L LVLDEADL+LSYG+ DD+KA+ S P Q LM
Sbjct: 180 T----TPTDMSGLSFLVLDEADLILSYGHSFDDIKAILSGSGSSGTHSWRFPTFFQSFLM 235
Query: 100 SATSSSDVDKLKKLILHNPYILTLPE-VGDVKDEVIPKNVQQFWISC-SERDKLLYILTL 157
SAT +S+V +LK L+L NP IL + E + ++ N+ QF I +E+DK L I +
Sbjct: 236 SATMTSEVAELKSLVLRNPEILYVKESINELS------NLTQFSIKVPNEQDKFLLIYVI 289
Query: 158 LKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 217
+L+L++ K L+F N+ D +++LKLFLEKFGI+S +LN+ELP NSR H +EEFN G+FDY
Sbjct: 290 FRLKLIKGKGLVFVNSTDKSYQLKLFLEKFGIRSGVLNSELPFNSRYHAVEEFNKGIFDY 349
Query: 218 LIATDD-------------------------TQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
LIATD+ TQ +++ + + +K K D
Sbjct: 350 LIATDESENNLPIEKKASNPTPAPTDPNLIPTQPSVAEETTDNVVTNPKKRKNRDDKSQD 409
Query: 253 S--EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV------SPD 304
++GV RGIDF NV VINF++P + Y HRIGRT RA TG +S V P
Sbjct: 410 KPIDYGVSRGIDFVNVACVINFDLPLSTQSYTHRIGRTARAGRTGIGLSFVLSTARMEPS 469
Query: 305 EMKIFEEIKSFVGDDENEDSNIIA------PFPL---LAQNAVESLRYRAEDVAKSVTKI 355
K + ++ + I A P VE RYR ED +SVTK
Sbjct: 470 SNKTSKNLQETCARETEMWKKIEAEQITRGSIPKEYKFDMTQVEGFRYRMEDGLRSVTKA 529
Query: 356 AVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
A+RE+R ++++NEILNS KLK+HFE NP DL LKHDK L H++ VP YL+
Sbjct: 530 AIREARIKEIKNEILNSTKLKSHFEENPNDLMFLKHDKPLHPTRIQPHMKHVPSYLI 586
>gi|146423163|ref|XP_001487513.1| hypothetical protein PGUG_00890 [Meyerozyma guilliermondii ATCC
6260]
Length = 586
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 170/428 (39%), Positives = 250/428 (58%), Gaps = 32/428 (7%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD- 61
L+ C Q + L +++ + + L P+I+I+TP L+T + + S D
Sbjct: 130 LLVYCNSITQ---INLATNVSDQVVVSLLLAKPEIIISTP----LRLTTVLEKHASIVDL 182
Query: 62 -SLKILVLDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNP 118
++ L +DE DL+LSYGY +DL+ L +P R Q LMSAT + DV+ LK P
Sbjct: 183 TTVTSLAIDEVDLMLSYGYMEDLQKLDDFLPIKRNLQTYLMSATVNDDVNDLKARFCTKP 242
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
I+ L + + ++ ++ QF+ SE DK L+ + KL L++ K L F N ID +
Sbjct: 243 AIIKLNDNEENQNRLV-----QFYARTSEFDKFLFAYVIFKLHLIKGKTLAFVNNIDRGY 297
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-TQTKEKDQSDEGGH 237
RLKLFLE+FG++ ILN+ELP NSRLHI++EFN +++ LIA+D+ T+ E++ D+
Sbjct: 298 RLKLFLEQFGVRCCILNSELPVNSRLHIVDEFNKNVYNLLIASDESTEVTEQEGEDDQED 357
Query: 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
KSKK K+D E+GV RG+DF+NV V+NF++P + YVHR+GRT RA G +
Sbjct: 358 SKPEKSKKKKGKKVDGEYGVSRGVDFRNVACVLNFDLPTTSRSYVHRVGRTARAGKAGMA 417
Query: 298 VSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPF-PLLAQNA------------VESLRYR 344
+S V P +K + K+ D ++A L ++N VE RYR
Sbjct: 418 LSFVVP--VKEVGKHKTATNPGAKRDEKVLARIVKLQSKNGFEIKPYQFDMTQVEGFRYR 475
Query: 345 AEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHL 404
AED ++VT A+RE+R ++L+NEI+NSEKLK FE NP+DL L+HDK+L S L
Sbjct: 476 AEDAFRAVTLAAIREARIRELKNEIMNSEKLKRFFEENPQDLASLRHDKELHPAKVQSQL 535
Query: 405 RDVPDYLL 412
+ VPDYLL
Sbjct: 536 KRVPDYLL 543
>gi|406602502|emb|CCH45896.1| hypothetical protein BN7_5483 [Wickerhamomyces ciferrii]
Length = 579
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 179/474 (37%), Positives = 275/474 (58%), Gaps = 46/474 (9%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-----LKILV 67
+K++ L++ + + L P+I+++TP + L +DS L LV
Sbjct: 122 IKILNLSNQINEQVQHSLLLENPEILVSTPSRLINSLQKN-------NDSIDLSKLTYLV 174
Query: 68 LDEADLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125
+DE DL+LSYGY++DL L++ +P + Q LMSAT S D+ LK +P IL L +
Sbjct: 175 IDEVDLILSYGYQEDLDKLASYLPLKKTLQTFLMSATLSEDIQDLKTKFCRSPAILKLND 234
Query: 126 VGDVKDEVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
DE+ K+ + Q++ +E DK L + KL L++ K LIF N ID +RLKLFL
Sbjct: 235 -----DELNNKSKLVQYYAKTTEFDKFLLSYVIFKLNLIKGKTLIFVNNIDRGYRLKLFL 289
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244
E+FGIKS ILN+ELP NSRLHI++E+N +++ LIATDD+ +++ ++ + +
Sbjct: 290 EQFGIKSCILNSELPINSRLHIVDEYNKNVYNLLIATDDSDNIQENDEEDEDQEGEGEVE 349
Query: 245 KH-------PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
+ K K D E+GV RG+DFKNV V+NF++P +A YVHR+GRT RA G S
Sbjct: 350 NNDKSNKKDSKLKKDKEYGVSRGVDFKNVACVLNFDLPLSAKSYVHRVGRTARAGKAGIS 409
Query: 298 VSLVSPDE------------MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRA 345
+S V P++ K E+I + +N+ I P+ VE RYR+
Sbjct: 410 LSFVIPEKEVGKHKASFLKSTKRDEKILRRIIKQQNKLGFEIKPYQ-FDMKQVEGFRYRS 468
Query: 346 EDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLR 405
ED +SVT++++RE+R ++L+NE+L +EKLK HFE NP+DL L+HDK+L +HL+
Sbjct: 469 EDAFRSVTQVSIREARVKELKNELLTNEKLKRHFEENPQDLASLRHDKELHPARVQTHLK 528
Query: 406 DVPDYLL--DAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAE 457
+P+YLL A+T E K++ ++++ ++K K DPLKSF ++
Sbjct: 529 RIPNYLLPEGARTDEK----KISFVPFHKNKINKKKMGKKKGGKIDPLKSFKSK 578
>gi|432092632|gb|ELK25167.1| Putative ATP-dependent RNA helicase DDX56 [Myotis davidii]
Length = 445
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 162/395 (41%), Positives = 233/395 (58%), Gaps = 21/395 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PDIV+ TP + L L+ + DSL++LV+DEAD
Sbjct: 13 IRVANVSAAEDSASQRAVLMEKPDIVVGTPSRLLNHLQQDSLKLR---DSLELLVMDEAD 69
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 70 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQE----SQL 125
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P+ +QQF + C +E DK L + LLKL LV+ K+L+F NT++ +RL+LFLE+F I +
Sbjct: 126 PGPEQLQQFQVVCGAEEDKFLLLYALLKLSLVRGKSLLFVNTLERGYRLRLFLEQFSIPA 185
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD G V ++ K PK
Sbjct: 186 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRQGKGPKGNR 237
Query: 252 --DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
D E GV RGIDF +V V+NF++P YVHR GRT RA N G ++ V P E
Sbjct: 238 ASDLEAGVARGIDFHHVCAVLNFDLPPTPEAYVHRAGRTARANNPGVVLTFVLPTEQSQL 297
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
I+ +G + + + F + +E RYR D +SVTK A+RE+R ++++ E+
Sbjct: 298 GRIEELLGGENGAPALLPYQFRM---EEIEGFRYRCRDAMRSVTKQAIREARLKEIKEEL 354
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHL 404
L+SE+LK +FE NP+DL LL+HD L HL
Sbjct: 355 LHSERLKTYFEDNPRDLQLLRHDLPLHPAVVKPHL 389
>gi|395850076|ref|XP_003797626.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Otolemur
garnettii]
Length = 547
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 169/443 (38%), Positives = 250/443 (56%), Gaps = 23/443 (5%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + LS + DSL++LV+DEAD
Sbjct: 113 VRVANVSAADDSASQRAVLMEKPDVVVGTPS---RILSHLQQDNLKLHDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKNLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCDTEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD + G P+A
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDSVIATDAEVLGPPAKGKRRGRGPRGDKGSDPEA-- 343
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E ++
Sbjct: 344 ----GVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNLGIVLTFVLPTEKAHLDK 399
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 400 IEKLLSGENG--APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 456
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 457 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKK 510
Query: 432 NKNSSRRQGPRRKFRKSDPLKSF 454
K S +K + +PL+SF
Sbjct: 511 RKKLSSSCRKTKKVKAQNPLRSF 533
>gi|380024218|ref|XP_003695902.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56-like [Apis florea]
Length = 551
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 171/454 (37%), Positives = 258/454 (56%), Gaps = 25/454 (5%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++K V ++ + S + LA PDI+I+TP + + L ++ K SL+ L++DEA
Sbjct: 119 EVKAVDISPQIDLSAQKPLLAEKPDIIISTPSRLLQHLKAKNVKLKQ---SLETLIIDEA 175
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+ S+G+E+++K + +P Q +L SAT S DV LKKL+L +P IL L E
Sbjct: 176 DLIFSFGHENEIKDILNYLPILYQAVLASATLSEDVITLKKLVLRHPVILKLEE-----P 230
Query: 132 EVIP-KNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ P + + ++ E DK + LLKL L++ K +IF NT+D ++LKLFLE+FGI
Sbjct: 231 PLAPLSQLSHYSLAAEENDKAAILCALLKLRLIRGKTIIFVNTVDRCYKLKLFLEQFGIA 290
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ +LN+ELP SR + +FN+G +D +IA+D+ +S E H+ K K K
Sbjct: 291 TCVLNSELPAVSRCRAVTQFNSGTYDIIIASDE-------KSLEEPHIAKIKRGKRKK-- 341
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
D E GV RGIDF+ V V+NF+ P + Y+HR GRT R N G +SLVS E I E
Sbjct: 342 -DKESGVARGIDFQFVSNVLNFDFPPDINSYIHRAGRTARGKNDGTVLSLVSIRERPILE 400
Query: 311 EIKSFVGDDENEDSNI-IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+++ + N D + F L VE RYRA+D K+VT+IAVRE+R ++ + E+
Sbjct: 401 DVEVELKQCYNCDKLLKTYEFKL---EEVEGFRYRAKDAWKAVTRIAVREARLKEXKQEV 457
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAA 429
LN +KLK++FE NP+DL L+ DK L HL+DVPDY++ + K +
Sbjct: 458 LNCQKLKSYFEDNPRDLQSLRQDKALHTVKLQPHLKDVPDYIIPPTLKRLVNTSKKKKKF 517
Query: 430 MGNKNSSRRQGPRRKF--RKSDPLKSFSAEPTKR 461
+S+ R K+ R S+PL S + +K+
Sbjct: 518 NRETAASKPTATRSKYRARASNPLMSLQLQNSKK 551
>gi|241956492|ref|XP_002420966.1| ATP-dependent RNA helicase, putative; ribosome biogenesis protein,
putative [Candida dubliniensis CD36]
gi|223644309|emb|CAX41122.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 570
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 177/463 (38%), Positives = 261/463 (56%), Gaps = 29/463 (6%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++ ++ L+SS L + L P+I+I+TP + + L + ++K L +DE
Sbjct: 115 KINILNLSSSYSDQVLNSLLVNKPEIIISTPAKLIQILEKN--EKNIDLTTVKNLTIDEV 172
Query: 72 DLLLSYGYEDDLKALSAVIP--RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
DL+LS+GY DDLK L + +P + Q LMSAT + D+D LK+ P IL L E
Sbjct: 173 DLVLSFGYLDDLKKLESYLPVKKNLQTFLMSATVNDDLDDLKQRYCTKPAILKLNEDAAS 232
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+++++ Q++ +E DK L + KL L++ K + F N ID +RLKLFLE+FGI
Sbjct: 233 QNKLV-----QYYAKTTEFDKFLLAYVIFKLNLIKGKTIAFVNNIDRGYRLKLFLEQFGI 287
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ------TKEKDQSDEGGHVDSRKS 243
+ ILN+ELP NSRLHI+EEFN ++ LIATD+T ++ D EG K
Sbjct: 288 RCCILNSELPINSRLHIVEEFNKNVYHLLIATDETNELNEEQDEDDDDEGEGEIETKSKK 347
Query: 244 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
K K K D E+GV RG+DF+NV V+NF++P ++ Y+HRIGRT RA G ++S V P
Sbjct: 348 SKKSKFKQDKEYGVSRGVDFRNVACVLNFDLPTSSKAYIHRIGRTARAGKAGMALSFVLP 407
Query: 304 ------------DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKS 351
K E++ + ++++ I P+ VE RYRA+D ++
Sbjct: 408 LSEFGKHKTASLPSAKKDEKVLRRIVKQQSKNGFEIKPYQ-FDMKQVEGFRYRADDAFRA 466
Query: 352 VTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 411
VT+ VRE+R ++L+NE++NSEKLK FE NP+DL L+HDK+L S L++VP YL
Sbjct: 467 VTQTVVREARVKELKNELINSEKLKRFFEENPQDLASLRHDKELHPARIQSQLKNVPQYL 526
Query: 412 LDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
L + K + NK R+G + +K DPLKSF
Sbjct: 527 LPESARSDVKNIGFV-PFHKNKIHKHRKGKGKGRKKVDPLKSF 568
>gi|213409936|ref|XP_002175738.1| ATP-dependent RNA helicase dbp9 [Schizosaccharomyces japonicus
yFS275]
gi|212003785|gb|EEB09445.1| ATP-dependent RNA helicase dbp9 [Schizosaccharomyces japonicus
yFS275]
Length = 563
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 168/431 (38%), Positives = 242/431 (56%), Gaps = 25/431 (5%)
Query: 38 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 97
VIATP ++ G + + L LV+DEADL+ S+GY+DD+ L+ +P+GCQ
Sbjct: 141 VIATPSRAVAHITAGNMSL----NELLYLVIDEADLVFSFGYKDDIVTLTKSLPQGCQSF 196
Query: 98 LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTL 157
LMSAT + + D LK L+ NP L L E + Q+ + C E++K L L
Sbjct: 197 LMSATLNDNTDSLKGLVCRNPVTLKLEE------SEAEGQLTQYVVKCGEQEKFLLAYVL 250
Query: 158 LKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 217
KL L++ K L+F N ID +RLKLFLE+FGIKS +LN+ELP N+R+HI+++FN GL+
Sbjct: 251 FKLSLIKGKILVFVNEIDRCYRLKLFLEQFGIKSLVLNSELPINTRMHIVDQFNKGLYQI 310
Query: 218 LIATD----DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 273
+IA D D + E+ + E S +SKK K D E+GV RG+DF++V V+NF+
Sbjct: 311 IIAADEGERDDEGVEEQANTETEAQSSGESKKSKHGKKDKEYGVARGLDFEDVACVLNFD 370
Query: 274 MPQNAAGYVHRIGRTGRAYNTGASVSLVSP-DEM-KIFEEIKSFVGDDEN-----EDSNI 326
MP Y+HR+GRT RA G S+S V P +E+ K + DE E I
Sbjct: 371 MPTTTKSYIHRVGRTARAGKPGISLSFVVPKNEVGKHRPTTLASCKKDERVLHRLEKKGI 430
Query: 327 -IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
+AP+ + ++ +YR ED +SVT++AV+E+R +L+ EIL SEKLK++F NP D
Sbjct: 431 ELAPYK-FNKEQTQAFQYRMEDALRSVTRVAVQEARTAELKQEILASEKLKSYFSENPDD 489
Query: 386 LDLLKHDKDLSKKPPAS--HLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR 443
L L HD S + + HL+ VPDYLL Q V N ++ R
Sbjct: 490 LVSLTHDTAASVRMARTQKHLKHVPDYLLPKGKQAVAAEVGFVPYTKQNGRKHVQRSRTR 549
Query: 444 KFRKSDPLKSF 454
++ DPL++
Sbjct: 550 GKQRYDPLRTM 560
>gi|385305572|gb|EIF49536.1| atp-dependent rna helicase dbp9 (dead-box protein 9) [Dekkera
bruxellensis AWRI1499]
Length = 564
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 178/474 (37%), Positives = 268/474 (56%), Gaps = 46/474 (9%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L C +V+L + T S+ L + + P+I+I+TP + ++ +F+D
Sbjct: 113 LCVFCSKEVRL--LNATESLGDDLLNSLVDEHPEIIISTPSKLVSIFENH--KNLTFAD- 167
Query: 63 LKILVLDEADLLLSYGYEDDLKALS---AVIPRGCQCLLMSATSSSDVDKLKKLILHNPY 119
LK V+DE DL++SYGY DDL+ LS + +G Q +MSAT + DVD LKK P
Sbjct: 168 LKYFVIDEVDLVVSYGYNDDLEKLSDQYLNMKQGVQVFMMSATLNEDVDALKKRFCTKPA 227
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
+L L +V + K+++Q++I E DK L I +LKL L++ K LIF N +D +R
Sbjct: 228 VLRLQDVSEDN-----KDLRQYYIKTGELDKFLLIYVILKLNLIKGKILIFVNDLDRGYR 282
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239
LKL+L+ FGI+S ILN+ELP NSRLHI+E+FN ++ LIATD ++ E+D
Sbjct: 283 LKLYLQNFGIRSCILNSELPLNSRLHIVEQFNKNVYHLLIATD--ESNEQDAE------- 333
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
+ KK K+ ++GV RG+DFKNV V+NF++P ++ Y+HR+GRT RA +G S+S
Sbjct: 334 DKDEKKSSKSSKKXDYGVSRGVDFKNVACVLNFDLPTSSRAYIHRVGRTARAGKSGISLS 393
Query: 300 LV----------------SPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRY 343
V + + K+ E I+ + + + P+ + +++ RY
Sbjct: 394 FVVDAKEWGKHRASSLATARKDEKVMERIRR----AQTKLGYELEPYQF-DKAQLDNFRY 448
Query: 344 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASH 403
R ED +S+T+ A+RE+R ++++ E++ SEKLK HFE NP+DL L+HDK +SK +
Sbjct: 449 RMEDSFRSITRAAIREARLREIKMELITSEKLKRHFEENPEDLATLRHDKAVSKVRSDQN 508
Query: 404 LRDVPDYLLDA---KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
L+DVPDYLL K V R+ + R G K RK DPLK F
Sbjct: 509 LKDVPDYLLPKAARKNPSQVGFVPFNRSNGRKRRRGGRNGKDWKKRKVDPLKKF 562
>gi|345806339|ref|XP_850575.2| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Canis lupus
familiaris]
Length = 521
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 235/401 (58%), Gaps = 17/401 (4%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PDIV+ TP + L+ S DSL++LVLDEAD
Sbjct: 89 IRVADVSAAEDSASQRAVLMEKPDIVVGTPS---RILNHLQQDSLVLRDSLELLVLDEAD 145
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 146 LLFSFGFEEELKGLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 201
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P ++QF + C +E DK L + LLKL L++ K L+F NT++ ++RL+LFLE+F I +
Sbjct: 202 PGPDQLRQFQVVCETEEDKFLLLYALLKLSLIRGKCLLFVNTLERSYRLRLFLEQFSIPA 261
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR HI+ +FN G +D +IATD + G P+A
Sbjct: 262 CVLNGELPLCSRCHIISQFNQGFYDCVIATDAEVLGSLVKGRRRGRGSRGTRASDPEA-- 319
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
GV RGIDF +V +V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 320 ----GVARGIDFHHVSSVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPTEQSHLDT 375
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 376 IEELLSGENR--APVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 432
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
SE+LK +FE NP+DL LL+HD L HL VPDYL+
Sbjct: 433 SERLKTYFEDNPRDLQLLRHDLPLHPAIVKPHLGHVPDYLV 473
>gi|50557380|ref|XP_506098.1| YALI0F31493p [Yarrowia lipolytica]
gi|74689228|sp|Q6BZR4.1|DBP9_YARLI RecName: Full=ATP-dependent RNA helicase DBP9
gi|49651968|emb|CAG78911.1| YALI0F31493p [Yarrowia lipolytica CLIB122]
Length = 544
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 159/428 (37%), Positives = 246/428 (57%), Gaps = 41/428 (9%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L + C LK + +T + + + L P I++ TP + +L+ D
Sbjct: 105 LTQFCP---HLKSLNVTQQLGDDVISSLLEEKPSIIVGTP--------SRLLKYAKEMDC 153
Query: 63 LKI--LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
K+ LV+DEADLLLSYGY++DL LS ++P+ +MSAT + + D +K+ +
Sbjct: 154 SKVGYLVIDEADLLLSYGYKEDLIELSEMLPKTKHTFIMSATLNKESDLMKQQFCRS--- 210
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
T+ V E + + Q+++ CSERDK L + KL+LV+ K ++F N ID +RL
Sbjct: 211 -TVASVAVTAAEE-ERKLLQYYVKCSERDKFLLAYVMFKLQLVKGKTIVFVNEIDRCYRL 268
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
+LFLE+FGIK+ +LN+ELP SRLHI+E+FN G+F+ LI TD E ++ E S
Sbjct: 269 RLFLEQFGIKACVLNSELPIASRLHIVEQFNKGVFNLLICTD-----EANKLAEASKSAS 323
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
+++K+ +A E+ RG+DF NV V+NF++P ++ YVHR+GRT RA G ++S
Sbjct: 324 KQTKEVSRA---HEYSSTRGLDFMNVAFVLNFDLPLSSRAYVHRVGRTARANKAGTALSF 380
Query: 301 VSP------------DEMKIFEEI-KSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 347
V P D K E++ K + + E+++ I P+ VE RYR +D
Sbjct: 381 VVPADQWGKDKVAKLDTAKRDEKVLKKIIKNQESQNME-IKPYS-FDMKQVEGFRYRMDD 438
Query: 348 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 407
++VT + VRE+R ++++ E+LNSE+L HF+ NP DL L+HDK+L +H++ V
Sbjct: 439 AFRAVTTVGVREARVKEIKTELLNSERLARHFDENPDDLKALRHDKELHTSKVQAHMKRV 498
Query: 408 PDYLLDAK 415
PDYLL K
Sbjct: 499 PDYLLGRK 506
>gi|24643725|ref|NP_523434.2| helicase [Drosophila melanogaster]
gi|3378056|gb|AAC28406.1| helicase [Drosophila melanogaster]
gi|17944409|gb|AAL48095.1| RE72861p [Drosophila melanogaster]
gi|22833199|gb|AAF50818.2| helicase [Drosophila melanogaster]
Length = 560
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 271/478 (56%), Gaps = 32/478 (6%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD- 61
L+E C V++ + +S+ + R AL+ PDIV+ATP + G S D
Sbjct: 105 LVESCGKVVRVADIADSSNDTVTQ-RHALSESPDIVVATPANLLAYAEAG-----SVVDL 158
Query: 62 -SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
++ LV+DEADL+ +YGYE D K L +P Q +L+SAT + DV ++K L L+NP
Sbjct: 159 KHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLCLNNPVT 218
Query: 121 LTLPEVGDVKDEVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
L L E E++P++ + I E DK + LLKL L++ K++IF N+ID ++
Sbjct: 219 LKLEE-----PELVPQDQLSHQRILAEENDKPAILYALLKLRLIRGKSIIFVNSIDRCYK 273
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239
++LFLE+FGI++ +LN+ELP N R+H + +FN G +D +IA+D E GG
Sbjct: 274 VRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASD-----EHHMEKPGG--K 326
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
S ++K P++ D E RGIDF+ V+ VINF+ P++ Y+HR GRT R N G+ +S
Sbjct: 327 SATNRKSPRSG-DMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLS 385
Query: 300 LVSPDEMKIFEEIKSFVGDD--ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAV 357
VS E K+ + ++ + D E II + + VES RYRA+D ++ T++AV
Sbjct: 386 FVSMKESKVNDSVEKKLCDSFAAQEGEQIIKNYQFKMEE-VESFRYRAQDCWRAATRVAV 444
Query: 358 RESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQ 417
++R ++++ EILN EKLKA FE N +DL L+HDK L SHL D+P+Y++ +
Sbjct: 445 HDTRIREIKIEILNCEKLKAFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVPKALK 504
Query: 418 EACKMVKLARAAMGNKNSS--RRQGPRRKFRK--SDPLKSFSAEPTKRAGKGRMKREG 471
++V + + +G + R+ + F + +DPL + + KR R K++
Sbjct: 505 ---RVVGTSSSPVGASEAKQPRQSAAKAAFERQVNDPLMASQVDFGKRRPAHRRKKKA 559
>gi|194897631|ref|XP_001978693.1| GG17541 [Drosophila erecta]
gi|190650342|gb|EDV47620.1| GG17541 [Drosophila erecta]
Length = 559
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 170/472 (36%), Positives = 266/472 (56%), Gaps = 24/472 (5%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L+E C V++ + +S+ + R ALA PDIV+ATP K L+ S
Sbjct: 105 LVESCGKVVRVADIAGSSNDTVTQ-RHALAERPDIVVATPA---KLLAHAEAGSVVDLKH 160
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
++ LV+DEADL+ ++GYE D K L +P Q +L+SAT + DV ++K L L+NP L
Sbjct: 161 VETLVVDEADLVFAFGYEKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLK 220
Query: 123 LPEVGDVKDEVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E EV+ ++ + I E DK + LLKL L++ K++IF N+ID ++++
Sbjct: 221 LEE-----PEVVSQDQLTHQRILAEENDKPAILYALLKLRLIRGKSIIFVNSIDRCYKVR 275
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLE+FGI++ +LN+ELP N R+H + +FN G +D +IA+D+ ++ GG S
Sbjct: 276 LFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHLEQP-----GG--KSA 328
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
++K P++ D E RGIDF+ V+ VINF+ P++ Y+HR GRT R N G+ +S V
Sbjct: 329 TNRKSPRSG-DMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFV 387
Query: 302 SPDEMKIFEEIKSFVGDD--ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 359
S E K+ + ++ + D E II + + VES RYRA+D ++ T++AV +
Sbjct: 388 SMKEAKVNDAVEKKLCDSFAAQEGEQIIKNYQFKMEE-VESFRYRAQDCWRAATRVAVHD 446
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEA 419
+R ++++ EILN EKLK FE N +DL L+HDK L SHL D+P+Y++ K +
Sbjct: 447 TRIREIKTEILNCEKLKGFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIV-PKALKR 505
Query: 420 CKMVKLARAAMGNKNSSRRQGPRRKFRK--SDPLKSFSAEPTKRAGKGRMKR 469
+ A R+ + F + +DPL + + +R G R K+
Sbjct: 506 VVGTNPSTAGASETKQPRQSAAKAAFERQANDPLMATQVDFKRRPGPRRKKK 557
>gi|260817772|ref|XP_002603759.1| hypothetical protein BRAFLDRAFT_86587 [Branchiostoma floridae]
gi|229289082|gb|EEN59770.1| hypothetical protein BRAFLDRAFT_86587 [Branchiostoma floridae]
Length = 359
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 144/325 (44%), Positives = 212/325 (65%), Gaps = 11/325 (3%)
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN--VQQFWISCSE 147
+P+ Q LMSAT S DV LKKLILHNP L L E +P++ + Q+ I C E
Sbjct: 2 LPKIYQAFLMSATLSEDVQALKKLILHNPVTLKLEE------SQLPESDRLTQYHIMCEE 55
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
DK L I TLLKL LV+ K ++F N+ID +RLKLFLE+F + + +LN+ELP +SR HI+
Sbjct: 56 GDKFLIIYTLLKLRLVRGKTILFVNSIDRCYRLKLFLEQFSVPACVLNSELPVSSRCHIV 115
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+FN GL++ +IATD++ +D + ++K K K K D E+GV RGIDF+ V
Sbjct: 116 NQFNQGLYNLVIATDESALDAEDSGGKEKTGKAKKKAKRFKKKKDKEYGVSRGIDFQFVS 175
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 327
VINF+ P Y+HR+GRT R + G ++SL+S E+ + ++ ++ + D N+ +I
Sbjct: 176 NVINFDFPTQVDSYIHRVGRTARGDSQGTALSLISAQELPLLQQAETALSGDTNDP--VI 233
Query: 328 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 387
P+ + +E RYRA+D +SVTK VRE+R +++R+EILNSEKLK++FE NP+DL
Sbjct: 234 KPYRFKMEE-IEGFRYRAKDALRSVTKTNVREARLKEIRSEILNSEKLKSYFEDNPRDLQ 292
Query: 388 LLKHDKDLSKKPPASHLRDVPDYLL 412
+L+HDK L+ H+++VP+YL+
Sbjct: 293 VLRHDKALAASKVKPHMKNVPEYLM 317
>gi|257215840|emb|CAX83072.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 [Schistosoma japonicum]
Length = 529
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 159/425 (37%), Positives = 256/425 (60%), Gaps = 35/425 (8%)
Query: 6 LCKGQVQ-LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
LCK + + V +++S ++ + PDIVI TP + + L +G L K L+
Sbjct: 101 LCKYAAKSISSVDISASYDIDQIKPLILENPDIVIGTPSRLMQVLRSGFLSLKH----LR 156
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKL--KKLILHNPYI-L 121
+V+DEADL+ ++G+E +++ L +P+ Q +LMSAT D K+ + L+ H ++ +
Sbjct: 157 CIVVDEADLIFTFGHEAEIRDLRTYLPQKIQAILMSATLD-DTSKIIRRYLVKHANWVRV 215
Query: 122 TLPEVGDVKDEVIPKNVQ--QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
LP+ + +P + Q Q+ IS + DK ++ L KL +V+ K LIFTN++D ++
Sbjct: 216 ELPD-----EAFLPGDNQLTQYIISAEDEDKYAILIALFKLRIVRGKTLIFTNSVDRCYK 270
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239
L+LFL++FGI++A+LN+ELP SR HI+++FN GL+DYL+ATD++Q S E
Sbjct: 271 LRLFLDEFGIRAALLNSELPVKSRSHIIDQFNRGLYDYLLATDESQADHNTPSSEV---- 326
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
S KS K + + D+E+GV RGIDF+ V VINF+ P YVHR+GRT RA G ++S
Sbjct: 327 SNKSSKRIRHR-DTEYGVSRGIDFQMVSNVINFDFPPTPILYVHRVGRTARADQMGTALS 385
Query: 300 LVSPDEMKIFEEIKSF------------VGDDENEDSNIIAPFPLLAQNAVESLRYRAED 347
VS E ++++ V +++N S++ P+ + V+ +YRA D
Sbjct: 386 FVSKAEESRLVDVEALLNPSGAAVVKPGVANEKNVASSVFRPYQ-FRLSEVDGFKYRAAD 444
Query: 348 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 407
V + +T+ VRE+R ++++ E+LNSE+LK +F+ + DL+ L+HDK L K HL+DV
Sbjct: 445 VMRHITRKVVREARLKEIKIELLNSERLKGYFQDHIPDLEALRHDKPL-KHIAQPHLKDV 503
Query: 408 PDYLL 412
PDYL+
Sbjct: 504 PDYLV 508
>gi|195568017|ref|XP_002107552.1| GD15498 [Drosophila simulans]
gi|194204962|gb|EDX18538.1| GD15498 [Drosophila simulans]
Length = 557
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 266/475 (56%), Gaps = 29/475 (6%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSD 61
L+E C V++ + +S+ + R AL+ PDIV+ATP + + GV+ K
Sbjct: 105 LVESCGKVVRVADIADSSNDTVTQ-RHALSENPDIVVATPANLLAYAEARGVVDLKH--- 160
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
++ LV+DEADL+ +YGYE D K L +P Q +L+SAT + DV ++K L L NP L
Sbjct: 161 -VETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLCLKNPVTL 219
Query: 122 TLPEVGDVKDEVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
L E E++P++ + I E DK + LLKL L++ K++IF N+ID +++
Sbjct: 220 KLEE-----PELVPQDQLTHQRILAEENDKPAILYALLKLRLIRGKSIIFVNSIDRCYKV 274
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
+LFLE+FGI++ +LN+ELP N R+H + +FN G ++ +IA+D E GG
Sbjct: 275 RLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYNIIIASD-----EHHMEKPGG---- 325
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
++K P++ D E RGIDF+ V+ VINF+ P++ Y+HR GRT R N G+ +S
Sbjct: 326 -TNRKSPRSG-DMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSF 383
Query: 301 VSPDEMKIFEEIKSFVGDD--ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 358
VS E K+ + + + D E I+ + + VES RYRA+D ++ T++AV
Sbjct: 384 VSTKEAKVNDLVAKKLCDSFAAQEGEEIMKNYQFKMEE-VESFRYRAQDCWRAATRVAVH 442
Query: 359 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQE 418
++R ++++ EILN EKLK FE N +DL L+HDK L SHL D+P+Y++ +
Sbjct: 443 DTRIREIKTEILNCEKLKGFFEENKRDLQALRHDKPLRAIKVHSHLSDMPEYIVPKALKR 502
Query: 419 ACKMVKLARAAMGNKNSSRRQGPRRKFRK--SDPLKSFSAEPTKRAGKGRMKREG 471
+ A A K R+ G F++ +DPL + + KR R K++
Sbjct: 503 VVGTLPSAAGASEAKQ-PRQHGAEAAFKRQANDPLMASHVDLGKRRPAHRRKKKA 556
>gi|343424963|emb|CBQ68500.1| probable ATP dependent RNA helicase of the DEAD-box family
[Sporisorium reilianum SRZ2]
Length = 653
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 164/422 (38%), Positives = 241/422 (57%), Gaps = 45/422 (10%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL- 86
R L+ PD+VIATP L L K+ +SL I DEADL+LSYG++ D+K+L
Sbjct: 176 RLLLSEKPDVVIATPSKALAYLQNASLDLKTGMESLAI---DEADLILSYGHDADVKSLL 232
Query: 87 -SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP-KNVQQFWIS 144
+ +P Q LMSAT +SDV KLK L+L NP IL L + +DE N+ QF+
Sbjct: 233 GANFLPAHFQTFLMSATMTSDVSKLKGLLLRNPVILKL----NHEDESASGSNLVQFYTK 288
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
+E DK L + +LKL+L++ KA++F N ++ +RLKLFLEKFG+++ +LNAELP NSR
Sbjct: 289 TTEEDKFLLVYVILKLKLIRGKAILFVNELERGYRLKLFLEKFGLRACVLNAELPINSRY 348
Query: 205 HILEEFNAGLFDYLIATDD--------------------TQTKEKDQSDEGGHVDSRKSK 244
I+EEFN G FDY++ATD+ + + + + + K+
Sbjct: 349 SIVEEFNKGKFDYIVATDEPTGASGAVGDDEEEEGEEEAEDGEGESKKRKSSKDKAVKTS 408
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
K K+ +E+GV RG+DF NV VINF++P + Y+HR+GRT R ++G S+S + P
Sbjct: 409 KRAKST-SAEYGVSRGVDFVNVSCVINFDLPSSVDAYIHRVGRTARGGSSGTSLSFIVPS 467
Query: 305 E---MKIFEEIKSFVGDDE------NEDSNIIAPFPLLAQN----AVESLRYRAEDVAKS 351
+ S GD+ S+ + L N +V RYR D KS
Sbjct: 468 AEVGRSKYLYCASTHGDETLFKQLARPSSHALLGGALQEWNYDAASVAGFRYRVTDTLKS 527
Query: 352 VTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD-LSKKPPASHLRDVPDY 410
+T+ +RE+R ++L++EIL+S KL++HFE +P DL L+HDK L + +HL+ VP Y
Sbjct: 528 ITRATIREARIKELKHEILSSAKLQSHFEDHPDDLAYLQHDKALLGSRAQQAHLKHVPQY 587
Query: 411 LL 412
L+
Sbjct: 588 LV 589
>gi|195482299|ref|XP_002101990.1| GE15300 [Drosophila yakuba]
gi|194189514|gb|EDX03098.1| GE15300 [Drosophila yakuba]
Length = 560
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 159/413 (38%), Positives = 245/413 (59%), Gaps = 21/413 (5%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L+E C V++ + +S+ + R ALA PDIV+ATP K L+ S
Sbjct: 105 LVESCGKVVRVADIAGSSNDTVTQ-RHALAERPDIVVATPA---KLLAHAEAGSVVDLKH 160
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
++ LV+DEADL+ ++GYE D K L +P Q +L+SAT + DV ++K L L+NP L
Sbjct: 161 VETLVVDEADLVFAFGYEKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLCLNNPVTLK 220
Query: 123 LPEVGDVKDEVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E EV+ ++ + I E DK + LLKL L++ K++IF N+ID ++++
Sbjct: 221 LEE-----PEVVSQDQLTHQRILAEENDKPSILYALLKLRLIRGKSIIFVNSIDRCYKVR 275
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLE+FGI++ +LN+ELP N R+H + +FN G +D +IA+D+ ++ GG S
Sbjct: 276 LFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHLEQP-----GG--KSA 328
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
++K P++ D E RGIDF+ V+ VINF+ P++ Y+HR GRT R N G+ +S V
Sbjct: 329 TNRKSPRSG-DMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFV 387
Query: 302 SPDEMKIFEEIKSFVGDD--ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 359
S E K+ + ++ + D E II + + VES RYRA+D ++ T++AV +
Sbjct: 388 SMKEAKVNDAVEKKLCDSFAAQEGEQIIKNYQFKMEE-VESFRYRAQDCWRAATRVAVHD 446
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+R ++++ EILN EKLK FE N +DL L+HDK L SHL D+P+Y++
Sbjct: 447 TRIREIKTEILNCEKLKGFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIV 499
>gi|403414059|emb|CCM00759.1| predicted protein [Fibroporia radiculosa]
Length = 660
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 172/501 (34%), Positives = 257/501 (51%), Gaps = 103/501 (20%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+LI C +V + + S+ + L+ PDIVIATP + L+ +LQSK+
Sbjct: 110 SLIAYCDKEVTIANICTGSTTQLQ--KTLLSDHPDIVIATPA---RALT--LLQSKALLL 162
Query: 62 SLKIL-VLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
V+DEADL+LSYG+++ ++ + +P+ Q LMSAT + DV+ LK L+L +P
Sbjct: 163 DALDTLVIDEADLILSYGHDESVRQVFQGGFLPKVFQSFLMSATMTEDVEALKGLVLRSP 222
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
IL L E DE N+ Q+++ CSE DK L + +LKL L++ K ++F N +D +
Sbjct: 223 VILKLEE-----DEDEAANLSQYYVRCSEVDKFLLVYVILKLRLIKGKCILFVNDVDRCY 277
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE---- 234
RLKLFLE+F IKS +LN+ELP NSR H ++EFN G++DY+IA+D++ + + SDE
Sbjct: 278 RLKLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIASDESAGRTEHDSDEEEPH 337
Query: 235 ----------------GGHVDSRKSKKHPKA----------------------------- 249
G S + K+ P +
Sbjct: 338 AESDDDEYTTTQRETLSGQPASDEEKEQPSSSGSSLKRKRRSDTLATEGTAAKSSSKSSK 397
Query: 250 ------KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
D+E+GV RG+DF +V VINF++P +A Y HR+GRT RA TG ++S V P
Sbjct: 398 RKQRRRNNDAEYGVSRGVDFVDVSCVINFDLPTSARSYTHRVGRTARAGRTGMALSFVIP 457
Query: 304 DEMKIFEEIKSFVGDDENEDSNIIAPFPL-------------LAQNAVESLRYRAEDVAK 350
+ ++ V + ED + A VE+ RYR ED +
Sbjct: 458 RDQWGRNKVVGSV-ESSKEDEKVFARVEREQAARGSQVKEYSFDMKQVEAFRYRMEDALR 516
Query: 351 SVTKIAVRESRAQDLRNEILNSEK-------------------LKAHFEVNPKDLDLLKH 391
SVT+ A++E+R ++L++EILNS+K ++AHFE NP DL+ L+H
Sbjct: 517 SVTRSAIKEARIKELKSEILNSDKLKVTTLLLLFSKAMLIAYGIQAHFEDNPNDLEYLRH 576
Query: 392 DKDLSKKPPASHLRDVPDYLL 412
DK L H++ VP YLL
Sbjct: 577 DKPLHPTRVQPHMKHVPKYLL 597
>gi|195399387|ref|XP_002058302.1| GJ15568 [Drosophila virilis]
gi|194150726|gb|EDW66410.1| GJ15568 [Drosophila virilis]
Length = 564
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 176/496 (35%), Positives = 261/496 (52%), Gaps = 56/496 (11%)
Query: 5 ELCKGQVQL---------KVVQLT----SSMPASDLRAALAGPPDIVIATPGCMPKCLST 51
ELC+ Q+ KVV++ SS + R ALA PDIV+ATP +
Sbjct: 92 ELCRQSRQVIEQLAESCGKVVRVADIAGSSNDVATQRHALAERPDIVVATPSKLLAHADV 151
Query: 52 GVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK 111
LQ ++ LV+DEADL+ ++GYE D K L +P Q +L+SAT S DV ++K
Sbjct: 152 VDLQH------IETLVVDEADLIFAFGYEKDFKRLIKHLPPIYQAVLVSATISDDVARMK 205
Query: 112 KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFT 171
L LHN L L E D V + I E DK + LLKL L+Q K++IF
Sbjct: 206 GLCLHNAVTLKLEE----PDLVSLDQLSHQRILAEENDKPAILCALLKLTLIQGKSIIFV 261
Query: 172 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ 231
N +D ++++LFLE+FGI+S +LN+ELP N R+H + +FN G++D +IA+D+ EK
Sbjct: 262 NNVDRCYKVRLFLEQFGIRSCVLNSELPANIRIHTISQFNRGVYDIIIASDE-HLLEKPA 320
Query: 232 SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 291
K K++ D E RGIDF+ V+ VINF+ P++ Y+HR GRT R
Sbjct: 321 G----------QKAKDKSQRDHESSASRGIDFQGVNNVINFDFPRDVTSYIHRAGRTARG 370
Query: 292 YNTGASVSLVS----PDEMKIFEEIKSFVGDDENEDSNIIAPFP------------LLAQ 335
N G+ +S VS P + E ++ +G + + + ++ P
Sbjct: 371 NNKGSVLSFVSIKELPVNQAVEERLRCSLGKEPHLTVDALSDEPQKPAVEDIIKLYQFKM 430
Query: 336 NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL 395
VE+ RYRA+D ++ T++AV ++R ++++NEILN EKLK FE N +DL L+HDK
Sbjct: 431 EEVEAFRYRAQDCWRAATRVAVHDTRIREIKNEILNCEKLKGFFEENKRDLLALRHDKPA 490
Query: 396 SKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRK--SDPLKS 453
SHL VPDY+L + A K V LAR +R G + +++ +DPL
Sbjct: 491 RTIKVQSHLAHVPDYILPS----ALKRVALARPNTLAAKQTRTTGAKSAYQRQSNDPLMV 546
Query: 454 FSAEPTKRAGKGRMKR 469
+ KR G + ++
Sbjct: 547 SEVDYGKRRGAPKRRK 562
>gi|195173765|ref|XP_002027657.1| GL15985 [Drosophila persimilis]
gi|198470361|ref|XP_001355297.2| GA14086 [Drosophila pseudoobscura pseudoobscura]
gi|194114592|gb|EDW36635.1| GL15985 [Drosophila persimilis]
gi|198145414|gb|EAL32354.2| GA14086 [Drosophila pseudoobscura pseudoobscura]
Length = 558
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 166/449 (36%), Positives = 259/449 (57%), Gaps = 26/449 (5%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSD 61
L E C V++ + T+S ++ R ALA PDIV+ATP + + GV+ K
Sbjct: 104 LAEYCHKVVRVADISGTTSNTVTE-RHALAERPDIVVATPAKLLNHAKADGVVDLKK--- 159
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
++ LV+DEADL+ ++GYE D KAL +P Q +L+SAT S DV ++K L LHNP L
Sbjct: 160 -VETLVVDEADLIFAFGYEMDFKALLKHLPSIYQSVLVSATLSDDVVRMKGLCLHNPVTL 218
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E D V + I E DK + + LLKL+L++ K +IF NTID +++++
Sbjct: 219 KLEE----PDVVSQDQLTHQRILAEENDKPVILYALLKLQLIRGKTIIFVNTIDRSYKIR 274
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLE+FGI++ +LN +LP + R++++ +FN G +D +IA+D + D G D R
Sbjct: 275 LFLEQFGIRACVLNPQLPASIRINMISQFNKGTYDIIIASDQHYLERPD----NGSQDKR 330
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
KS + D E RGIDF++V+ VINF+ P + Y+HR GRT R N G+ +SLV
Sbjct: 331 KSTRG-----DFESSASRGIDFQSVNNVINFDFPLDVTSYIHRAGRTARGNNKGSVLSLV 385
Query: 302 SPDEMKIFEEI--KSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 359
S E + + + K + + II + + +ES RYRA D ++ ++ AV+E
Sbjct: 386 SIKESGVNDAVEKKLRITFSAKKGDTIIKNYQ-FKMDELESFRYRAYDAWRAASRAAVQE 444
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEA 419
+R ++++ E+LNS KLK +FE + +DL+ L+HDK L SHL D+P+Y++ +
Sbjct: 445 TRLREIKTEVLNSVKLKGYFEDHQRDLNALRHDKPLRILKTPSHLSDMPEYMV----PKV 500
Query: 420 CKMVKLARAAMGNKNSSRRQGPRRKFRKS 448
K V +++A+ SS + PR+ K+
Sbjct: 501 LKRVVVSKASGPADESSDAKRPRQTAAKA 529
>gi|254573594|ref|XP_002493906.1| hypothetical protein [Komagataella pastoris GS115]
gi|238033705|emb|CAY71727.1| hypothetical protein PAS_chr4_0966 [Komagataella pastoris GS115]
gi|328354273|emb|CCA40670.1| RNA helicase [Komagataella pastoris CBS 7435]
Length = 601
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 176/504 (34%), Positives = 261/504 (51%), Gaps = 65/504 (12%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L C +V K + L++S+ A L+ P+IVI+TP + + L SK
Sbjct: 110 SLTSFCSKKV--KCLNLSNSVSEQIHLAQLSELPEIVISTPTKLLQLLKKS---SKVNLS 164
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAV---IPRGCQCLLMSATSSSDVDKLKKLILHNP 118
LK V+DE DL+ SYGY+DDLK L+ + + Q LMSAT + DV++LK L P
Sbjct: 165 QLKYFVIDEVDLIFSYGYDDDLKELTELYLNLQNKIQVFLMSATMNEDVEQLKALYCKAP 224
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
+L L + D + N+ Q++ E +K L + KL L++ K LIF N ID +
Sbjct: 225 AVLKLND-----DAIKSSNLVQYYCKTGELEKFLLSYVIFKLNLIKGKTLIFVNNIDRGY 279
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD--------------- 223
RLKLFLE+FGIKS +LN ELP +SR+H +++FN ++ LIATD+
Sbjct: 280 RLKLFLEQFGIKSCLLNNELPLSSRMHTVDQFNKNVYRLLIATDESSVGEEREEDFLEEA 339
Query: 224 ----TQTKEKDQSDEGGHVDSRKS--------------KKHPKAKLDSEFGVVRGIDFKN 265
T EK + ++ K+ K + K+ + G RG+DFKN
Sbjct: 340 NETETNADEKVAEKKSTENNTEKTEENEDGEEEIEEEEKINSKSSKQRDSGFSRGVDFKN 399
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM---KIFEEIKSFVGDD--- 319
V V+NF++P A YVHR+GRT RA +G ++S V + I +KS D+
Sbjct: 400 VACVLNFDLPTTAKSYVHRVGRTARAGKSGMALSFVVEKRLWNKHIASNLKSAKRDEKIL 459
Query: 320 ------ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 373
+ + + P+ ++ VE RYR ED ++VT A+R +R ++++ EI+ +E
Sbjct: 460 ARIMTAQGRIGSKLEPYHF-NESQVEGFRYRMEDAFRAVTATAIRNARIKEIKQEIMVNE 518
Query: 374 KLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL--DAKTQEACKMVKLARAAMG 431
KL+ HFE NP+DL L+HDK+L HL+ VPDYLL A++ V
Sbjct: 519 KLQRHFEENPQDLLSLRHDKELHPNRVQPHLKRVPDYLLPKGARSHPTVGFVPFKNT--- 575
Query: 432 NKNSSRRQGPRRKFRKS-DPLKSF 454
N N ++GPR RK +PLK F
Sbjct: 576 NPNKHEKRGPRGGVRKRVNPLKKF 599
>gi|326437945|gb|EGD83515.1| hypothetical protein PTSG_04124 [Salpingoeca sp. ATCC 50818]
Length = 632
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 156/404 (38%), Positives = 234/404 (57%), Gaps = 45/404 (11%)
Query: 35 PDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDIV+ATP + K L V+ +D K+LVLDEADL+L+YG++D ++ LS V+P
Sbjct: 152 PDIVVATPTTVLSKILEKRVV----VTDDFKMLVLDEADLILTYGHDDAVRQLSTVLPSV 207
Query: 94 CQCLLMSATSSSDVDKLKK-LILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLL 152
Q +L+SAT S D+ LK ++L +P I+ L E D+ D+ + ++Q + C++ DK L
Sbjct: 208 KQTILLSATMSEDIQALKSHIVLRSPAIIKLEE-SDLPDD---EQLKQHALVCNDEDKYL 263
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
LL L+L+ K L+F NT++ ++LKLFLEKF I+S LN+ LP NSR HI+ +FN
Sbjct: 264 NFYALLALKLLSGKTLVFVNTVNECYKLKLFLEKFSIRSCALNSRLPANSRRHIVTQFNK 323
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G++D +IA+D+T ++G + R +K D+E+GVVRG+DFK+V V+NF
Sbjct: 324 GIYDIIIASDET------DGNQGKKIKPRNAK---FVASDNEYGVVRGVDFKDVTNVVNF 374
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV---------------- 316
+ P YVHR+GRT R +G ++S V P + ++ F+
Sbjct: 375 DFPPTVERYVHRVGRTARGRQSGIALSFVDPRQRSALHRVEKFLQEQAKAQDDDDEDVDG 434
Query: 317 ----GDDENE----DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
G E E D II P+ + + V+ L+YR +D VTK + + +D+ +
Sbjct: 435 NDEGGKAETEIDAQDGEIIKPYTIKV-DVVKPLKYRVDDAIAHVTKRDIDLAIRRDIELQ 493
Query: 369 ILNSEKLKAHFEVNPKDLDLLKHDKDLSK-KPPASHLRDVPDYL 411
+LNSE LKAHF NP+DL +L+HD L K HL+D+P YL
Sbjct: 494 LLNSETLKAHFVENPRDLQVLRHDTVLHDVKDIKPHLKDLPFYL 537
>gi|380091313|emb|CCC11170.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 680
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 165/439 (37%), Positives = 249/439 (56%), Gaps = 49/439 (11%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A C +Q +LT ++ + LR+ LA PD++++TP + +G L
Sbjct: 202 AFSAFCTKDIQ--SAKLTDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALSVAK--- 256
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRG-CQCLLMSATSSSD-VDKLKKLILHNPY 119
L+ LVLDEADL+LSYGY++D++ ++ +P+G Q +MSAT SD +D LK NP
Sbjct: 257 -LQYLVLDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSATLVSDELDTLKGFFCRNPT 315
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
+L L E +DE + QF++ C E DK L + KL+L++ L+F ID A+R
Sbjct: 316 MLDLKESFSAEDE----KLTQFYVKCGEDDKWLISYLIFKLQLIKGPCLVFVADIDRAYR 371
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----------TQTKE 228
LKLF E+F I+S +LN+ELP N+R+ I+EEFN G++D +IA+D+ T+ K
Sbjct: 372 LKLFFEQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERSEVFLEDEKKTEEKA 431
Query: 229 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
+ + D K K + D E+GV RGIDFKNV VINF+MP +++ Y+HRIGRT
Sbjct: 432 EKKEDGEDKDKKSGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDMPTSSSSYIHRIGRT 491
Query: 289 GRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLA 334
RA G ++S+V P ++ F + K +D ++A P+
Sbjct: 492 ARAGRAGIALSMVVPHDL--FGKHKPTSIKQCEKDEKVLAKVMRQQAKLNRKLEPYN-FN 548
Query: 335 QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD 394
++ +E+ RYR D A+RE+R ++LR E++ SE LK +FE NP +L L+HD +
Sbjct: 549 KDQMEAFRYRMND--------AIREARTRELRQELMRSETLKRYFEENPNELSHLRHDGE 600
Query: 395 L-SKKPPASHLRDVPDYLL 412
L +K +HL+ VPDYLL
Sbjct: 601 LGTKMRQQAHLKHVPDYLL 619
>gi|336266016|ref|XP_003347778.1| hypothetical protein SMAC_03876 [Sordaria macrospora k-hell]
Length = 680
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 165/439 (37%), Positives = 249/439 (56%), Gaps = 49/439 (11%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A C +Q +LT ++ + LR+ LA PD++++TP + +G L
Sbjct: 202 AFSAFCTKDIQ--SAKLTDNVSDAVLRSLLANAPDVIVSTPARAWHNIESGALSVAK--- 256
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRG-CQCLLMSATSSSD-VDKLKKLILHNPY 119
L+ LVLDEADL+LSYGY++D++ ++ +P+G Q +MSAT SD +D LK NP
Sbjct: 257 -LQYLVLDEADLVLSYGYDEDMENIARSLPKGGVQTTMMSATLVSDELDTLKGFFCRNPT 315
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
+L L E +DE + QF++ C E DK L + KL+L++ L+F ID A+R
Sbjct: 316 MLDLKESFSAEDE----KLTQFYVKCGEDDKWLISYLIFKLQLIKGPCLVFVADIDRAYR 371
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD-----------TQTKE 228
LKLF E+F I+S +LN+ELP N+R+ I+EEFN G++D +IA+D+ T+ K
Sbjct: 372 LKLFFEQFSIRSCVLNSELPINTRIKIIEEFNRGIYDIIIASDERSEVFLEDEKKTEEKV 431
Query: 229 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
+ + D K K + D E+GV RGIDFKNV VINF+MP +++ Y+HRIGRT
Sbjct: 432 EKKEDGEDKDKKSGKGKKKKGRRDQEYGVSRGIDFKNVAAVINFDMPTSSSSYIHRIGRT 491
Query: 289 GRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA--------------PFPLLA 334
RA G ++S+V P ++ F + K +D ++A P+
Sbjct: 492 ARAGRAGIALSMVVPHDL--FGKHKPTSIKQCEKDEKVLAKVMRQQAKLNRKLEPYN-FN 548
Query: 335 QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD 394
++ +E+ RYR D A+RE+R ++LR E++ SE LK +FE NP +L L+HD +
Sbjct: 549 KDQMEAFRYRMND--------AIREARTRELRQELMRSETLKRYFEENPNELSHLRHDGE 600
Query: 395 L-SKKPPASHLRDVPDYLL 412
L +K +HL+ VPDYLL
Sbjct: 601 LGTKMRQQAHLKHVPDYLL 619
>gi|194763885|ref|XP_001964063.1| GF21359 [Drosophila ananassae]
gi|190618988|gb|EDV34512.1| GF21359 [Drosophila ananassae]
Length = 567
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 230/396 (58%), Gaps = 13/396 (3%)
Query: 20 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 79
SS A+ R ALA PDIV++TP + G + + ++L V+DEADL+ ++GY
Sbjct: 121 SSSDAATQRHALAERPDIVVSTPSKLLNHADAGGVVDLKYVETL---VVDEADLMFAFGY 177
Query: 80 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-V 138
E D K L P Q +L+SAT S DV ++K L L+NP L L E E++P++ +
Sbjct: 178 EKDFKKLIKHFPPIYQAILVSATLSDDVVRMKGLCLNNPVTLKLEE-----PELVPQDQL 232
Query: 139 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 198
I E DK + LLKL LV+ K +IF N ID ++++LFLE+FGI++ +LN+EL
Sbjct: 233 THQRILAEENDKPAILYALLKLRLVRGKTIIFVNNIDRCYKVRLFLEQFGIRACVLNSEL 292
Query: 199 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 258
P N R+H + +FN G +D +IA+D+ ++ S +K P++ D E
Sbjct: 293 PANIRIHTISQFNKGTYDIIIASDEHHLEQPGGKSSAASSSSSGKRKSPRSG-DFESSAS 351
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGIDF+ V+ V+NF+ P++ Y+HR GRT R N G+ +S VS E + + ++ +
Sbjct: 352 RGIDFQCVNNVLNFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKEAAVNDAVEKKLHS 411
Query: 319 D--ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 376
E II + + VES RYRA+D ++ T++AV ++R ++++ EILN EKLK
Sbjct: 412 TFAAQEGEQIIKNYQFKMEE-VESFRYRAQDCWRAATRVAVHDTRIREIKTEILNCEKLK 470
Query: 377 AHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
FE N +DL L+HDK L +HL D+PDY++
Sbjct: 471 GFFEENKRDLQALRHDKPLKTIKVQNHLSDMPDYIV 506
>gi|396501090|ref|XP_003845894.1| similar to ATP-dependent RNA helicase dbp9 [Leptosphaeria maculans
JN3]
gi|312222475|emb|CBY02415.1| similar to ATP-dependent RNA helicase dbp9 [Leptosphaeria maculans
JN3]
Length = 634
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 173/447 (38%), Positives = 256/447 (57%), Gaps = 34/447 (7%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+A LA PDIVIATP ++ G L + LV+DE DL++ YG++DDL +
Sbjct: 198 KAKLADRPDIVIATPARAWININNGALSVTELAH----LVVDEGDLVMGYGFKDDLDQIE 253
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
IP G Q LMSAT +++V L L+ +P +L L ++ + + V+Q+ I C+E
Sbjct: 254 ENIPTGVQKFLMSATLNTEVKSLGTLLCVDPVVLKLDDL-----DKNAQKVKQYVIKCAE 308
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+K L I + KL+L++ K+++F D ++R+KLFLE+FGIKS +LN+ELP SRLHI+
Sbjct: 309 EEKFLLIYAMFKLQLIKGKSIVFVGDTDRSYRVKLFLEQFGIKSCVLNSELPLASRLHIV 368
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
EEFN +++ LIA+D+T+ Q + G +KSKK ++K DS GV RGIDF NV
Sbjct: 369 EEFNKNIYNILIASDETEI--LGQQEIGESRPKKKSKKENESKTDS--GVSRGIDFLNVS 424
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG---DDE---- 320
V+NF+ P Y HRIGRT RA +G ++S + P + + +F G D+E
Sbjct: 425 CVLNFDFPGTYKSYFHRIGRTARAGKSGTAISFIIPKDKYRKHKSTTFSGCENDEEILKK 484
Query: 321 ----NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 376
E+ + + + +E RYR D +SVT+IA+RE+R +++R E+ S KL
Sbjct: 485 VEKHQEEGQKLENYNFDMKR-LEPFRYRFGDALRSVTRIAIREARIKEIRLELSKSAKLS 543
Query: 377 AHFEVNPKDLDLLKHDKDLSKKPPA---SHLRDVPDYLL-DAKTQEACKMVKLARAAMGN 432
+FE NP+ L L+HD+ L+ PA HL+ VPDYLL K E V L +
Sbjct: 544 RYFEENPEALAHLRHDQTLNH--PARIQPHLKHVPDYLLPGGKKPEDVGFVGLNLPRLDR 601
Query: 433 KNSSRRQG---PRRKFRKSDPLKSFSA 456
K + +G R + K DPLK+F+A
Sbjct: 602 KKFIKGKGRKVVRGRNGKVDPLKTFNA 628
>gi|195132612|ref|XP_002010737.1| GI21708 [Drosophila mojavensis]
gi|193907525|gb|EDW06392.1| GI21708 [Drosophila mojavensis]
Length = 566
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 174/493 (35%), Positives = 261/493 (52%), Gaps = 64/493 (12%)
Query: 5 ELCKGQVQL---------KVVQLT----SSMPASDLRAALAGPPDIVIATPGCMPKCLST 51
ELC+ Q+ KVV++T SS A+ R ALA PDIV++TP
Sbjct: 92 ELCRQSRQVIEQLSDSCGKVVRVTDIAGSSNDAATQRHALAERPDIVVSTPA-------- 143
Query: 52 GVLQSKSFSD--SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDK 109
+L D ++ LV+DEADL+ ++GYE D K L ++P Q +L+SAT S DV +
Sbjct: 144 KILAHADIVDLKHIETLVVDEADLIFAFGYEKDFKKLIKLLPPIYQAVLVSATISDDVAR 203
Query: 110 LKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALI 169
+K L LHN L L E D V + I E +K + LLKL L+Q K++I
Sbjct: 204 MKGLCLHNAVTLKLEE----PDLVSLDQLSHHRILAEENEKPAILYALLKLMLIQGKSII 259
Query: 170 FTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD--TQTK 227
F N +D ++++LFLE+FGI+S +LN+ELP N R+H + +FN G++D +IA+D+ +
Sbjct: 260 FVNNVDRCYKVRLFLEQFGIRSCVLNSELPANIRIHTINQFNRGVYDIIIASDEHLLEKP 319
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
++GG + K D E RGIDF+ V+ VINF+ P++ Y+HR GR
Sbjct: 320 AGKTKNKGG-----------QQKNDHESSASRGIDFQGVNNVINFDFPRDVTSYIHRAGR 368
Query: 288 TGRAYNTGASVSLVS----PDEMKIFEEIKSFVGDD------------ENEDSNIIAPFP 331
T R N G+ +S VS P + E+++ +G + NII P+
Sbjct: 369 TARGNNKGSVLSFVSIKEAPINQAVEEKLRISLGKQPHLTVDALSDQPQKPTENIIKPYQ 428
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
+ VE+ RYRA D ++ T++AV ++R ++++ EILN EKLK FE N +DL L+H
Sbjct: 429 FKLEE-VEAFRYRANDCWRAATRVAVHDTRIKEIKTEILNCEKLKGFFEENKRDLMALRH 487
Query: 392 DKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARA-AMGNKNSSRRQGPRRKFRK--S 448
DK SHL VP+Y+L + A K V L + A +R G + +++ +
Sbjct: 488 DKPSRTLKVQSHLAHVPEYILPS----ALKRVALNHSTAQSAPKQARITGAKAAYQRQSN 543
Query: 449 DPLKSFSAEPTKR 461
DPL + KR
Sbjct: 544 DPLMVSEVDYGKR 556
>gi|452004861|gb|EMD97317.1| hypothetical protein COCHEDRAFT_1209171 [Cochliobolus
heterostrophus C5]
Length = 611
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 178/483 (36%), Positives = 274/483 (56%), Gaps = 43/483 (8%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L + C GQ +++V + + ++AALA P++V+ATP T + S +
Sbjct: 153 SLAQHC-GQ-EIRVRNIAGKESDAVVKAALADKPEVVVATPARA----WTNINNSTLAVN 206
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
L LV+DE DL+ YG+ +D+ ++ IP G Q +++SAT S+DV+ L L+ +P IL
Sbjct: 207 DLGTLVVDEGDLINGYGFAEDMTNIAREIPVGVQKIVLSATLSTDVEALGSLLCTDPVIL 266
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L ++ KD K V+Q+ + +E +K L I + KL+L++ K ++F +D ++R+K
Sbjct: 267 KLADLD--KDS---KRVKQYVLKVAEDEKFLLIYAMFKLQLIKGKTIVFVGDVDRSYRVK 321
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LFLE+FGIKSA+LN+ELP SR HI+EEFN +++ LIA+D+ DE +
Sbjct: 322 LFLEQFGIKSAVLNSELPLASRTHIVEEFNKNVYNILIASDENDV--VGVQDEDSKPKKK 379
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
K+K++ +K DS GV RGIDF NV V+NF+ P N Y HRIGRT RA +G ++S +
Sbjct: 380 KAKRNNDSK-DS--GVSRGIDFLNVACVLNFDFPGNYKSYFHRIGRTARAGKSGTAISFI 436
Query: 302 SPDEMKIFEEIKSFVG---DDE--------NEDSNIIAPFPLLAQNAVESLRYRAEDVAK 350
P E + SF G D+E E+ + + + +E RYR D K
Sbjct: 437 IPKEKYRKHKPTSFAGCENDEEVLKKVEKHQEEGQKLENYNFDMKR-LEPFRYRFADALK 495
Query: 351 SVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSK----KPPASHLRD 406
SVT+IA+RE+R +++ +E+ S+KL +FE NP+ L L+HD+ L+ +P HL+
Sbjct: 496 SVTRIAIREARIKEIHSELAKSQKLSRYFEENPEALAHLRHDQTLNHPLRIQP---HLKH 552
Query: 407 VPDYLL-DAKTQEACKMVKLARAAMGNKNSSRRQGPR--RKFRKSDPLKSFSAEPTKRAG 463
VPDYLL K E V L K + +G + ++ K DPLK+F+A G
Sbjct: 553 VPDYLLPGGKKPEDVGFVGLNLPKPDRKRFVKGRGRKVVKRNGKVDPLKTFNAR-----G 607
Query: 464 KGR 466
KG+
Sbjct: 608 KGK 610
>gi|451853432|gb|EMD66726.1| hypothetical protein COCSADRAFT_138680 [Cochliobolus sativus
ND90Pr]
Length = 611
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 172/459 (37%), Positives = 261/459 (56%), Gaps = 43/459 (9%)
Query: 27 LRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 86
++AALA P++V+ATP T + S + L LV+DE DL+ YG+ +D+ +
Sbjct: 176 VKAALADKPEVVVATPARA----WTNINNSTLAVNDLGTLVVDEGDLMNGYGFAEDMTNI 231
Query: 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 146
+ IP G Q +++SAT S+DV+ L L+ +P IL L ++ KD K V+Q+ + +
Sbjct: 232 AREIPVGVQKIVLSATLSTDVEALGSLLCIDPVILKLADLD--KDS---KRVKQYVLKVA 286
Query: 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
E +K L I + KL+L++ K ++F +D ++R+KLFLE+FGIKSA+LN+ELP SR HI
Sbjct: 287 EDEKFLLIYAMFKLQLIKGKTIVFVGDVDRSYRVKLFLEQFGIKSAVLNSELPLASRTHI 346
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
+EEFN +++ LIA+D+ DE +K+K++ +K DS GV RGIDF NV
Sbjct: 347 VEEFNKNVYNILIASDENDV--VGVQDEDSKPKKKKAKRNNDSK-DS--GVSRGIDFLNV 401
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 326
V+NF+ P N Y HRIGRT RA +G ++S + P E + SF G + +E+ +
Sbjct: 402 ACVLNFDFPGNYKSYFHRIGRTARAGKSGTAISFIIPKEKYRKHKPTSFAGCENDEE--V 459
Query: 327 IAPFPLLAQNA------------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEK 374
+ Q +E RYR D KSVT+IA+RE+R +++ +E+ S+K
Sbjct: 460 LKKVEKHQQEGQKLENYNFDMKRLEPFRYRFADALKSVTRIAIREARIKEIHSELAKSQK 519
Query: 375 LKAHFEVNPKDLDLLKHDKDLSK----KPPASHLRDVPDYLL-DAKTQEACKMVKLARAA 429
L +FE NP+ L L+HD+ L+ +P HL+ VPDYLL K E V L
Sbjct: 520 LSRYFEENPEALAHLRHDQTLNHPLRIQP---HLKHVPDYLLPGGKKPEDVGFVGLNLPK 576
Query: 430 MGNKNSSRRQGPR--RKFRKSDPLKSFSAEPTKRAGKGR 466
K + +G + ++ K DPLK+F+A GKG+
Sbjct: 577 PDRKRFVKGRGRKVVKRNGKVDPLKTFNAR-----GKGK 610
>gi|320583899|gb|EFW98112.1| ATP-dependent RNA helicase DBP9 (DEAD-box protein 9) [Ogataea
parapolymorpha DL-1]
Length = 542
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/392 (38%), Positives = 231/392 (58%), Gaps = 47/392 (11%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPR-- 92
+I ++TP + L ++KS +L+ LV+DE DL++SYGY+DDL L +
Sbjct: 140 EIYVSTPAKLISVLE----KNKSIQLTNLRFLVIDEVDLMVSYGYKDDLDKLGEYLSTKT 195
Query: 93 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLL 152
Q LMSAT + +V +LK + P +L L +V K +++ Q++I +E DK L
Sbjct: 196 NTQTFLMSATLNEEVTELKTKFCNKPAVLKLEDVDSDKKKLV-----QYYIKTNELDKFL 250
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
I +LKL L++ K L+F N +D ++LKLFL+ FGIKS +LN+ELP NSRLHI+EEFN
Sbjct: 251 LIYVILKLGLIKGKILLFVNELDRGYKLKLFLQNFGIKSCLLNSELPVNSRLHIVEEFNK 310
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
+++ LIATD+ ++ QS+ +FGV RG+DFKNV V+NF
Sbjct: 311 NVYNLLIATDEAN--QEGQSN--------------------DFGVSRGVDFKNVACVLNF 348
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLV------------SPDEMKIFEEIKSFVGDDE 320
++P ++ YVHR+GRT R +G ++S V S K E++ + + +
Sbjct: 349 DLPVSSKTYVHRVGRTARGGKSGMALSFVVAAKEWGKHKASSLASAKKDEKVLARIERSQ 408
Query: 321 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 380
++ + P+ VE+ RYR ED +SVT+ AVR++R ++++ E++ SEKLK HFE
Sbjct: 409 SKLGYELKPYQ-FNMKQVEAFRYRMEDSFRSVTRAAVRDARLREIKQELMASEKLKRHFE 467
Query: 381 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
NP+DL L+HDKDL+ +HL+ VP YLL
Sbjct: 468 ENPQDLVTLRHDKDLASVRADAHLKRVPTYLL 499
>gi|391337668|ref|XP_003743188.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Metaseiulus occidentalis]
Length = 506
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 152/418 (36%), Positives = 241/418 (57%), Gaps = 23/418 (5%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
+AL + C G VQ VV + + S LR L PD+V+ TP + + G L
Sbjct: 103 VALGQCCGGLVQ--VVDVAEHVQLSVLRPQLLEKPDVVVGTPSRILAHIKAGNLDV---- 156
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
SLKIL++DEADL+ ++G E D + L +P Q ++ SAT + DV LK+L+LHNP
Sbjct: 157 SSLKILMVDEADLVFTFGQEKDTEQLLKQLPPIYQAIVSSATLNEDVLSLKRLVLHNPIT 216
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
L L E +E + Q+ + C E DK + L +L+L++ K LIF N++D +R
Sbjct: 217 LRLDENSLTDNE----GLTQYVVKCEELDKHAILAALFQLKLIKGKTLIFLNSVDRGYRT 272
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
KLFL++F ++S +LN+ELP +SR +++ FN G +D ++ TDD+ + +S +
Sbjct: 273 KLFLDQFAVRSCVLNSELPLSSRQVVIDRFNEGRYDVIVVTDDSNLEASQKSKKKKGSKQ 332
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
R++ + EF RG+DF+ V VIN E P + YVHR+GRT RA N G +++
Sbjct: 333 RQN--------EGEFAASRGLDFQFVSNVINLEFPPSVEAYVHRVGRTARAGNKGTALNF 384
Query: 301 VSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRES 360
VS EM I++E+++ + E N+ P+ + +E +YRA+ S+ K +R++
Sbjct: 385 VSVREMPIYKEVEARMI---AEKKNMFKPYR-FKIDEIEGFKYRAQTALNSLQKKVIRDA 440
Query: 361 RAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL-SKKPPASHLRDVPDYLLDAKTQ 417
R +D++ E+LNSEKLK FE NP++ LL+HD+ L +K + L+ VP+Y++ Q
Sbjct: 441 RLRDIKEEMLNSEKLKTFFESNPRETSLLRHDRALRTKGAKHTSLKHVPEYIVPPTLQ 498
>gi|71024867|ref|XP_762663.1| hypothetical protein UM06516.1 [Ustilago maydis 521]
gi|46099685|gb|EAK84918.1| hypothetical protein UM06516.1 [Ustilago maydis 521]
Length = 672
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 182/504 (36%), Positives = 258/504 (51%), Gaps = 92/504 (18%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL- 86
R L+ PD+VIATP L L KS +SL I DEADL+LSYG++ D+K+L
Sbjct: 183 RLLLSEKPDVVIATPSKALNYLQNASLDLKSGMESLAI---DEADLILSYGHDADVKSLL 239
Query: 87 -SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP-KNVQQFWIS 144
+ +P Q LMSAT +SDV KLK L+L NP +L L + DE N+ QF+
Sbjct: 240 GANFLPSHFQSFLMSATMTSDVSKLKGLLLRNPVVLKL----NHDDEAASGSNLVQFYTK 295
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
+E DK L +LKL+L++ KA++F N ++ +RLKLFLEKFG+++ +LNAELP NSR
Sbjct: 296 TTEEDKFLLAYVILKLKLIRGKAILFVNELERGYRLKLFLEKFGLRACVLNAELPINSRY 355
Query: 205 HILEEFNAGLFDYLIATD-----------------------------DTQT--------K 227
I+EEFN G FDY++ATD D Q K
Sbjct: 356 SIVEEFNKGKFDYIVATDEPTGASGNMQDDEGDDEEEDADEREADEVDEQAEDQREAGKK 415
Query: 228 EKDQSDEGGHVDSRKSK--KHPKAKLD-SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHR 284
K G S KSK +H K K SE+GV RG+DF NV VINF++P + Y+HR
Sbjct: 416 RKSSEHAGAETKSNKSKVSQHRKGKNGASEYGVSRGVDFINVSCVINFDLPTSVDSYIHR 475
Query: 285 IGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS-----NIIAPFPLLAQNAVE 339
+GRT R +G ++S V P + ++ + ++S N + LL +A++
Sbjct: 476 VGRTARGGASGTALSFVVPSD-QVGRSKYLYCASTTRDESVFKMLNKPSTISLLG-SALQ 533
Query: 340 SLRYRAEDVAKSVT-KIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD-LSK 397
+Y + + ++ K A++E L+NEIL S KL++HFE +P DL L+HDK L+
Sbjct: 534 EWKYDSSASPRRLSEKHAIKE-----LKNEILTSSKLQSHFEDHPDDLAFLQHDKALLTS 588
Query: 398 KPPASHLRDVPDYLLDAKTQEACKMVKLA--------------------------RAAMG 431
+ SHL+ VP YL+ K+ K + R +
Sbjct: 589 RAQQSHLKHVPQYLVPKIINPGAKLTKSSGSEYKGYVPKNKIKDGANDRKNKGGKRRSST 648
Query: 432 NKNSSRRQGPRRKFRKSDPLKSFS 455
KN++ G RK K DPL+ FS
Sbjct: 649 GKNTTGAAGKSRK--KVDPLRKFS 670
>gi|289742677|gb|ADD20086.1| RNA helicase [Glossina morsitans morsitans]
Length = 543
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 163/435 (37%), Positives = 240/435 (55%), Gaps = 45/435 (10%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDL---RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
E C G+V L+++ L+S+ DL R AL+ PD+V++TP + L L K
Sbjct: 106 EKC-GKV-LRIIDLSSN----DLLAQRHALSERPDVVVSTPAKILLHLQASALDLKC--- 156
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
L+ LV+DEADL S+G+E + K +P Q +L+SAT + +V +K +IL NP IL
Sbjct: 157 -LETLVVDEADLAFSFGFEKEFKKFVEYLPPIYQAVLVSATITQEVIDIKSIILKNPVIL 215
Query: 122 TLPEVGDVKDEVIPKNVQQFW---ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
L E E++P+ QQ I E DK + LLKL L++ K +IF N++D ++
Sbjct: 216 KLEE-----PELVPE--QQLLHQRIIVEEDDKPAILYALLKLRLIRGKNVIFVNSVDRSY 268
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 238
+LKLF+E+F IKS +LN+ELP R+H + +FN G +D +IA+D+ + ++
Sbjct: 269 KLKLFIEQFSIKSCVLNSELPSTIRIHTINQFNQGAYDLIIASDEHMLENPGRN------ 322
Query: 239 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 298
K D E G RGIDF V VIN + P++A Y+HR GRT R N G +
Sbjct: 323 -----------KSDKESGASRGIDFHCVSNVINLDFPKDANSYIHRAGRTARGNNKGTVL 371
Query: 299 SLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 358
S VS E + E+++ + D II + + VE RYRA+D +++T+IAV
Sbjct: 372 SFVSLHEQQTNEKVEERLRSGYKSDEQIIKNYQ-FKLDEVEPFRYRAKDAWRAITRIAVH 430
Query: 359 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQE 418
ESR ++++ EI NSEKLK F N +DL +L+HDK L HL VPDY++ +
Sbjct: 431 ESRVREIKQEIFNSEKLKGFFNENTRDLQVLRHDKPLKTIKIQPHLSQVPDYIVP----K 486
Query: 419 ACKMVKLARAAMGNK 433
A K + L NK
Sbjct: 487 ALKRLTLTAKGTANK 501
>gi|330934123|ref|XP_003304424.1| hypothetical protein PTT_17014 [Pyrenophora teres f. teres 0-1]
gi|311318967|gb|EFQ87486.1| hypothetical protein PTT_17014 [Pyrenophora teres f. teres 0-1]
Length = 605
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 170/458 (37%), Positives = 256/458 (55%), Gaps = 45/458 (9%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+AALA P++V+ATP +++ L F ILV+DE DL+ YG+ +D++ ++
Sbjct: 173 KAALADKPEVVVATPARAWANINSSNLTISDFG----ILVVDEGDLINGYGFSEDMENIA 228
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P G Q +++SAT S+DV+ L L+ NP IL L ++ KD V+Q+ + +E
Sbjct: 229 REMPAGVQKIVLSATLSTDVESLGSLLCTNPVILKLADLD--KDS---NKVKQYVLKVAE 283
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
DK L I + KL+L++ K ++F +D ++R+KLFLE+FGIKS +LN+ELP SR HI+
Sbjct: 284 DDKFLLIYAMFKLQLIKGKTIVFVGDVDRSYRVKLFLEQFGIKSCVLNSELPLASRTHIV 343
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS-EFGVVRGIDFKNV 266
E FN ++ LIA+D+T D G DS K KAK +S + GV RGIDF NV
Sbjct: 344 ECFNRNEYNILIASDET--------DVVGVQDSEARPKKKKAKKESNDSGVSRGIDFLNV 395
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 326
V+NF+ P Y HRIGRT RA +G ++S + P + + +F G + +E+ +
Sbjct: 396 SCVLNFDFPGTYKSYFHRIGRTARAGKSGTAISFIIPKDQYRKHKPTTFAGCEHDEE--V 453
Query: 327 IAPFPLLAQNA------------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEK 374
+ Q +E RYR D +SVT+IA+RE+R +++ E+ S+K
Sbjct: 454 LEKVEKHQQEGQKLENYNFDMKRLEPFRYRFGDALRSVTRIAIREARIKEIHIELAKSQK 513
Query: 375 LKAHFEVNPKDLDLLKHDKDLSKKPPAS---HLRDVPDYLL-DAKTQEACKMVKLARAAM 430
L +FE NP+ L L+HD+ L+ PA HL+ VPDYLL K E V L
Sbjct: 514 LSRYFEENPEALAHLRHDQTLNH--PARIQPHLKYVPDYLLPGGKKPEDVGFVGLNIPKP 571
Query: 431 GNKNSSRRQGPR--RKFRKSDPLKSFSAEPTKRAGKGR 466
+ + +G + R+ K DPLK+F+A GKG+
Sbjct: 572 NRRTYVKGRGRKVVRRNGKVDPLKTFNAR-----GKGK 604
>gi|189192450|ref|XP_001932564.1| ATP-dependent RNA helicase DBP9 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187974170|gb|EDU41669.1| ATP-dependent RNA helicase DBP9 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 605
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 170/458 (37%), Positives = 257/458 (56%), Gaps = 45/458 (9%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+AALA P++V+ATP +++ L + SD L LV+DE DL+ YG+ +D++ ++
Sbjct: 173 KAALADKPEVVVATPARAWANINSSNL---AISD-LGTLVVDEGDLINGYGFSEDMENIA 228
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P G Q +++SAT S+DV+ L L+ NP +L L ++ KD V+Q+ + E
Sbjct: 229 REMPAGVQKIVLSATLSTDVESLGSLLCTNPVVLKLADLD--KDS---NKVKQYVLKVGE 283
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+K L I + KL+L++ K ++F +D ++R+KLFLE+FGIKS +LN+ELP SR HI+
Sbjct: 284 DEKFLLIYAMFKLQLIKGKTIVFVGDVDRSYRVKLFLEQFGIKSCVLNSELPLASRTHIV 343
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS-EFGVVRGIDFKNV 266
E FN ++ LIA+D+T D G DS K KAK DS + GV RGIDF NV
Sbjct: 344 ECFNRNEYNILIASDET--------DVVGVQDSETRPKKKKAKKDSNDSGVSRGIDFLNV 395
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 326
V+NF+ P Y HRIGRT RA +G ++S + P + + +F G + +E+ +
Sbjct: 396 SCVLNFDFPGTYKSYFHRIGRTARAGKSGTAISFIIPKDQYRKHKPTTFAGCEHDEE--V 453
Query: 327 IAPFPLLAQNA------------VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEK 374
+ Q +E RYR D +SVT+IA+RE+R +++ E+ S+K
Sbjct: 454 LKKVEKHQQEGQKLENYNFDMKRLEPFRYRFSDALRSVTRIAIREARIKEIHMELAKSQK 513
Query: 375 LKAHFEVNPKDLDLLKHDKDLSKKPPAS---HLRDVPDYLL-DAKTQEACKMVKLARAAM 430
L +FE NP+ L L+HD+ L+ PA HL+ VPDYLL K E V L
Sbjct: 514 LSRYFEENPEALAHLRHDQTLNH--PARIQPHLKHVPDYLLPGGKKPEDVGFVGLNIPKP 571
Query: 431 GNKNSSRRQGPR--RKFRKSDPLKSFSAEPTKRAGKGR 466
+ + +G + R+ K DPLK+F+A GKG+
Sbjct: 572 NRRTYVKGRGRKVVRRNGKVDPLKTFNAR-----GKGK 604
>gi|324508234|gb|ADY43479.1| ATP-dependent RNA helicase DDX56 [Ascaris suum]
Length = 665
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 165/475 (34%), Positives = 264/475 (55%), Gaps = 52/475 (10%)
Query: 15 VVQLTSSMPA--------SDLRAALAG---PPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
++QLT++ P D A +A PD++++TP L + + L
Sbjct: 210 LLQLTAAFPFLLSVNFSDFDFNAEIAWLKEHPDMIVSTPSR----LVDACKRKPQLCEQL 265
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+ +VLDEADLLLSYGYE+D++ L +P+ Q + SAT + D+ LKK+ L+ +
Sbjct: 266 RYVVLDEADLLLSYGYENDMRQLKQFLPQNYQTIFTSATLTEDISPLKKMFLNGALVTLR 325
Query: 124 PEVGDVKDEVIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
+ G + D + Q+ I+C +E ++ +L ++KL+L+ K++IF + D ++L L
Sbjct: 326 LKEGQLPDS---DQLAQYLITCRNEEERFAVLLAMMKLKLLVGKSIIFVSNPDRCYQLGL 382
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD--------DTQTKEKDQSDE 234
FL+ F I+S ILNA++P NSR H+++EFN G + Y+IA+D DTQ + Q+DE
Sbjct: 383 FLQAFQIRSCILNAQMPANSRCHVVDEFNEGRYSYIIASDVSGVLAERDTQEGQWPQNDE 442
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
R+ KK + + D E GV RGIDF +V V+NF+ P + GYVHR+GRT R +N
Sbjct: 443 YSLGIIREKKK--RKRFDKESGVARGIDFTHVSNVVNFDFPTSFDGYVHRVGRTARGWNK 500
Query: 295 GASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTK 354
G ++S +P+E E ++ + +E +I P+ + + +ES RA + + T+
Sbjct: 501 GTAISFATPNEASFVELVRHKM---VSEMGRVIMPYAIHIKE-LESFVLRAREALAACTR 556
Query: 355 IAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDK---DLSKKPPASHLRDVPDYL 411
+RE+R ++R E L S+KL +F NP++ LL+HDK LS PA + DVPDY+
Sbjct: 557 SVIREARLAEIRGEALRSKKLDGYFAENPRERTLLEHDKKLYTLSLHSPA--IADVPDYM 614
Query: 412 LDAKTQEACKMVKLARAA--MGNKNSSRRQGPRR--------KFRKSDPLKSFSA 456
+ A + + + A +G K S+RQ +R + R DPL+SFSA
Sbjct: 615 VPA----SLRGMNFTSNAQPIGRKRRSQRQNHKRITAAQSKHRRRMEDPLRSFSA 665
>gi|367040143|ref|XP_003650452.1| hypothetical protein THITE_2072362 [Thielavia terrestris NRRL 8126]
gi|346997713|gb|AEO64116.1| hypothetical protein THITE_2072362 [Thielavia terrestris NRRL 8126]
Length = 866
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 166/483 (34%), Positives = 255/483 (52%), Gaps = 79/483 (16%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ +LT ++ + R+ LA PD+V+ATP +++ L L+ LVLDEAD
Sbjct: 415 IHAARLTENVSDAVQRSLLANIPDVVVATPARAWHSVNSSALSLAK----LQYLVLDEAD 470
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D++ LS +P+G Q ++MSAT S++++ LK + NP +L L E +DE
Sbjct: 471 LVLSYGYDEDMENLSRALPKGVQTIMMSATLSTELETLKGMFCRNPTLLDLKEEFGAEDE 530
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF++ C E DK L + KL+L++ LIF ID ++RLKLF E+F I+S
Sbjct: 531 ----KLTQFYVKCGEDDKWLIAYLIFKLQLIKGPCLIFVADIDRSYRLKLFFEQFSIRSC 586
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ-SDEG---------------G 236
ILN+ELP N+R+ I+EEFN G++D +IA+D+ D+ + EG G
Sbjct: 587 ILNSELPVNTRIKIIEEFNRGIYDIIIASDEKSELFGDEAAGEGGDDKKESKKKSKAKEG 646
Query: 237 HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 296
+ KK K + D E+GV R GRT RA G
Sbjct: 647 EDNVEPPKKRRKNRKDEEYGVSR--------------------------GRTARAGRAGI 680
Query: 297 SVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNA---------------VESL 341
++S V P E+ F + K +D ++A ++ Q A +E+
Sbjct: 681 ALSFVVPKEL--FGKHKPTSIKSCEKDEKVLA--KIIKQQAKLNRKLEPYNFNKSQMEAF 736
Query: 342 RYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP-P 400
RYR D ++VTK+A+RE+R ++LR E+L SE LK +FE NP +L L+HD +L ++
Sbjct: 737 RYRMNDALRAVTKVAIREARTKELRQELLRSETLKRYFEENPTELAHLRHDGELGRRTRQ 796
Query: 401 ASHLRDVPDYLLDAKTQEA-----CKMVKLARAAMGNKNSSRRQGPR-RKFR---KSDPL 451
HL+ VPDYLL + +EA V + ++ R+ P+ R F+ K+DPL
Sbjct: 797 QPHLKHVPDYLLPKEGKEALASKQVGFVPFKKEGGKDRRHHRKGKPKGRSFKVGGKNDPL 856
Query: 452 KSF 454
K+F
Sbjct: 857 KTF 859
>gi|357616261|gb|EHJ70100.1| RNA helicase [Danaus plexippus]
Length = 559
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 167/463 (36%), Positives = 258/463 (55%), Gaps = 28/463 (6%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+++ + ++S+ ++ LA PDIV++TP + L ++ K + + +LV+DEA
Sbjct: 110 EVRCIDISSNGDMQIQKSLLADKPDIVVSTPSRVLAHLKANNVRLK---EDIAMLVVDEA 166
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+ S+GYE+++K L +P+ Q +L SAT S DV LKK++L NP L L E
Sbjct: 167 DLVFSFGYENEIKELLEHLPKIYQAVLASATLSDDVLSLKKIVLRNPVTLKLEE-----P 221
Query: 132 EVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
E+ P +Q + + E DK + LLKL L++ K +IF T+D ++LKL+LE+F I
Sbjct: 222 ELAPSTQLQHYHLFAEEDDKAAILYALLKLNLIRGKTIIFVRTVDRCYKLKLYLEQFKIG 281
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV--DSRKSKKHPK 248
S +LN+ELP R +E+FN G + ++A+D+ +E D GG + ++ K K+ K
Sbjct: 282 SCVLNSELPAAVRCMSVEQFNRGRYQIIVASDEKALEEPD----GGMMLEETGKKKQKSK 337
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
+ D E GV RGIDF++V VINF+ P + YVHR GRT R + G+ +S VS E +
Sbjct: 338 RRKDKESGVSRGIDFQHVSNVINFDFPLDVTAYVHRAGRTARGTSQGSVLSFVSIREKPL 397
Query: 309 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
+K + N ++ + A + VE RYR+ D ++VT++AVRE+R ++R E
Sbjct: 398 MNAVKEHLTKCFN-GQKVLQKYS-FALDEVEGFRYRSRDAWRAVTRVAVREARLSEIRRE 455
Query: 369 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARA 428
+LN ++L+ +FE NP DL LK DK L L VP+YLL A + + A
Sbjct: 456 LLNCKRLQGYFEENPTDLAALKRDKALHTVRLQPQLAHVPEYLLPAALRTDGPEPEPAAP 515
Query: 429 AMGNKNSSRRQG----PRRKF--RKSDPLKSF-----SAEPTK 460
++Q R K+ R+ DPLKSF SA P+K
Sbjct: 516 DAPPAKKKKQQNFGSVKRHKYQARQRDPLKSFAVKAASASPSK 558
>gi|361130742|gb|EHL02492.1| putative ATP-dependent RNA helicase dbp9 [Glarea lozoyensis 74030]
Length = 764
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 157/409 (38%), Positives = 229/409 (55%), Gaps = 51/409 (12%)
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS--CSE 147
+P+G Q +LMSAT +S+V+ LK L NP +L L + E + V Q+ ++ C+E
Sbjct: 1 MPKGVQTVLMSATLTSEVETLKGLFCRNPVVLKL-----EEAEEAGEGVSQYTVNYRCAE 55
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+K L + + KL+L++ K +IF ID +RLKL+LE+FGI+S ILN+ELP NSR+H++
Sbjct: 56 DEKFLLLYVIFKLKLIKGKCIIFVGDIDRCYRLKLYLEQFGIRSCILNSELPVNSRIHVV 115
Query: 208 EEFNAGLFDYLIATDD---------------------TQTKEKDQSDEGGHVDSRKSKKH 246
EEFN ++D +IA+D+ +TKE D + KK
Sbjct: 116 EEFNKNVYDIIIASDEHEVLGDEEEEKTEDAEEKADAGETKEADAEEAKSRSKEPSKKKR 175
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP-DE 305
+ D ++GV RGIDFKN+ V+NF++P ++ Y HRIGRT RA TG ++S V P D+
Sbjct: 176 RVVEKDKDYGVSRGIDFKNLACVLNFDLPTSSKSYTHRIGRTARAGQTGMALSFVIPADQ 235
Query: 306 MK--IFEEIKSFVGDDENEDSNI----------IAPFPLLAQNAVESLRYRAEDVAKSVT 353
+ I I+S DDE + I + P+ + VE+ RYR D ++VT
Sbjct: 236 YRKHIPTSIES-AKDDEKVLAKIMRHQLKKGKEVKPYNFDMKQ-VEAFRYRMSDALRAVT 293
Query: 354 KIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLD 413
++A+RE+R ++LR E++ SEKLK HFE NP DL L+HD +L SHL+ VPDYLL
Sbjct: 294 RVAIREARTRELRQELMKSEKLKRHFEENPGDLHHLRHDGELRAARVQSHLKHVPDYLLP 353
Query: 414 AKTQEACKMVKLA----RAAMGNKNSSRR----QGPRRKFRKSDPLKSF 454
++A + R KN R +G + RK DPLKSF
Sbjct: 354 EGGRKAITAGEHGFVGFRKVTDGKNRRTRINKGRGKKAGGRKIDPLKSF 402
>gi|429858013|gb|ELA32849.1| ATP dependent RNA helicase [Colletotrichum gloeosporioides Nara
gc5]
Length = 577
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 171/466 (36%), Positives = 259/466 (55%), Gaps = 48/466 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ V+L + + R+ L+ PDIVI+TP + +L + L LVLDEAD
Sbjct: 135 IHAVKLVDKISDAVQRSLLSNFPDIVISTPATAWR----NILNDALSLEKLSYLVLDEAD 190
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY +DL+ ++ +P+G Q L+MSAT S+DV L+ + P +L L + +E
Sbjct: 191 LILSYGYNEDLENIARKLPKGVQLLMMSATLSTDVTSLQGIFARKPTVLDLDD-----EE 245
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
N+ QF +SC+E +K L + KL+LV+ K LIF N +D ++RLKLFLE+F ++S
Sbjct: 246 TEGDNLSQFVVSCAEDEKFLLAFIIFKLKLVKGKCLIFVNDVDRSYRLKLFLEQFQVRSC 305
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---TKEKDQSDEGGHVDSRKSKKHPKA 249
ILN+ELP SR H+LEEFN G++D +IA+D+ +EKD +E G + K K+
Sbjct: 306 ILNSELPITSRAHVLEEFNRGVYDIIIASDEKSAMGVEEKDAEEEDGEGEKEKEKEKESK 365
Query: 250 KL--------DSEFGVVRGIDFKNV----HTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
K D EFGV RGIDFKNV ++F +P+ ++R + S
Sbjct: 366 KKNKKKSSKRDVEFGVSRGIDFKNVAAGQRMALSFYVPKE----LYR-------KHMPTS 414
Query: 298 VSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAV 357
+ DE K+ +IK E + P+ ++ +++ RYR +D ++VTK+AV
Sbjct: 415 IETAENDE-KVLAKIKRQQAKQGKE----VKPYNFKKEH-LDAFRYRLDDALRAVTKVAV 468
Query: 358 RESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL----- 412
RE+R ++L+ E+L SEKLK +FE NP +L L+HD +L HL+ +P+YLL
Sbjct: 469 REARMRELKQELLKSEKLKRYFEENPTELQHLRHDGELRTARQQPHLKHIPEYLLPKEGK 528
Query: 413 DAKTQEACKMVKLARAA--MGNKNSSRRQGPRRKFRKSDPLKSFSA 456
D+ T MV + + NK +G + RK +PLK+F A
Sbjct: 529 DSLTSNEVGMVPFRKVGGKLRNKKGKFGRGKKVGTRKVNPLKTFKA 574
>gi|441650301|ref|XP_004091008.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Nomascus leucogenys]
Length = 507
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 233/443 (52%), Gaps = 63/443 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT+D ++RL+LFLE+F I S
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLDRSYRLRLFLEQFSIPS 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR
Sbjct: 286 CVLNGELPLRSRAS---------------------------------------------- 299
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 300 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSHLGK 359
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + S I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 360 IEELLSGENR--SPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 416
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 417 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKK 470
Query: 432 NKNSSRRQGPRRKFRKSDPLKSF 454
K S ++ + +PL+SF
Sbjct: 471 RKKLSSSCRKAKRVKSQNPLRSF 493
>gi|353243874|emb|CCA75359.1| related to DBP9-ATP-dependent RNA helicase of the DEAD-box family
involved in biogenesis of the 60S ribosomal subunit
[Piriformospora indica DSM 11827]
Length = 702
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 167/481 (34%), Positives = 249/481 (51%), Gaps = 111/481 (23%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDL---------- 83
PD+V+ TP + + QSK+ S +L+ILV+DEADL+LSYG+ +
Sbjct: 146 PDVVVGTPARV-----LALAQSKTLSLHALEILVIDEADLILSYGHSQTMQTLLSSSTRS 200
Query: 84 ----------KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 133
K + +P Q +LMSAT ++DV LK L+L +P ILTL E + KD
Sbjct: 201 SDETTNDGTSKQTKSYLPSVYQSVLMSATLTADVTTLKSLVLRDPVILTLTE-EEAKDS- 258
Query: 134 IPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ Q+ + ++ +K L+I +LKL+L++ KA++F N ++ +RLKLFLE+F I+
Sbjct: 259 -RSLLSQYVLKVDNDAEKFLHIYVILKLKLIKGKAILFVNDVERCYRLKLFLEQFSIRCC 317
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTK------EKDQS-DEGG--------- 236
+LN ELP NSR H ++EFN G++DY+IATD++ + + DQ+ DEG
Sbjct: 318 VLNRELPINSRYHTIQEFNKGIYDYIIATDESGARNEEVDSDSDQAMDEGNQDPDLDEFV 377
Query: 237 -----------------------HVDSR-------------------KSKKHPKAKL--- 251
H++ K K P K+
Sbjct: 378 QTQREAEPQQEAPSSPLAGKKRKHIEVEDEDIKMEFEGEIADAKKQLKGSKKPTKKVKAE 437
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI--- 308
+ E+ RG+DF +V V+NF++P ++ YVHR+GRT RA G ++S V + KI
Sbjct: 438 EKEYSTSRGVDFLDVACVVNFDLPLSSRSYVHRVGRTARAGRGGVAISFVVTTDYKIKGG 497
Query: 309 ---FEEIKSF--VGDDENEDSNIIAPFP------------LLAQNAVESLRYRAEDVAKS 351
EE K + + D+N S + P L+ N + RYR +D +S
Sbjct: 498 KSHLEETKIWRRIERDQNGWSKDVYSLPAEDKPQSCIKDFTLSPNLLAGFRYRMQDALRS 557
Query: 352 VTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 411
VT AV+E+R ++L+NEILNS KLKAHFE +P DL+ L+HDK L SH++ VP YL
Sbjct: 558 VTGKAVKEARIKELKNEILNSGKLKAHFEDHPLDLEYLRHDKPLHPARIQSHMKYVPSYL 617
Query: 412 L 412
L
Sbjct: 618 L 618
>gi|195438252|ref|XP_002067051.1| GK24230 [Drosophila willistoni]
gi|194163136|gb|EDW78037.1| GK24230 [Drosophila willistoni]
Length = 555
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 232/398 (58%), Gaps = 29/398 (7%)
Query: 20 SSMPASDLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG 78
SS A R AL+ PDIV++TP + + GV+ K ++ LV+DEADL+ ++G
Sbjct: 122 SSNDAVTQRHALSERPDIVVSTPSKILAHAEAGGVVDLKH----IETLVVDEADLIFAFG 177
Query: 79 YEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN- 137
YE D K L +P Q +L+SAT + DV ++K L L NP L L E E++P++
Sbjct: 178 YEKDFKKLIKHLPPIYQAVLVSATITDDVVRMKGLCLKNPVTLKLEE-----PELVPQDQ 232
Query: 138 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 197
+ I E DK + LLKL LV+ K++IF N +D ++++LFLE+ GI++ +LN+E
Sbjct: 233 LTHQRILAEENDKPAILYALLKLRLVRGKSIIFVNNVDRCYKVRLFLEQIGIRACVLNSE 292
Query: 198 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 257
LP N R+H + +FN G +D +IA+D+ ++ GG SR + +
Sbjct: 293 LPANIRIHTISQFNKGSYDIIIASDEHYLEK-----PGGKSSSRSDHESSSS-------- 339
Query: 258 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RGIDF+ V+ VINF+ P++ Y+HR GRT R N G+ +SLVS E + E +++ +
Sbjct: 340 -RGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSLVSIKEGPVNEAVENKLR 398
Query: 318 DD---ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEK 374
+ +D II + + +ES RYRA+D ++ T++AV + R +++++EILN EK
Sbjct: 399 STFAAQADDEQIIKNYQ-FKMDEIESFRYRAQDCWRAATRVAVHDYRMREIKSEILNCEK 457
Query: 375 LKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
LK FE N +DL L+HDK SHL DVP+Y++
Sbjct: 458 LKGFFEENKRDLQALRHDKPSRTIKVQSHLSDVPEYIV 495
>gi|195047250|ref|XP_001992302.1| GH24281 [Drosophila grimshawi]
gi|193893143|gb|EDV92009.1| GH24281 [Drosophila grimshawi]
Length = 602
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 180/536 (33%), Positives = 265/536 (49%), Gaps = 100/536 (18%)
Query: 5 ELCKGQVQLKVVQLTSS----MPASDL----------RAALAGPPDIVIATPGCMPKCL- 49
ELC+ Q +L V QL S + +D+ R ALA PDIV+ATP + +
Sbjct: 94 ELCR-QSRLVVEQLAESCGKVIRVADIAGSSNDMATQRHALAERPDIVVATPSKILAHVE 152
Query: 50 -STGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVD 108
TG++ + ++ LV+DEAD++ ++GYE D K L +P Q +L+SAT + DV
Sbjct: 153 AGTGIVDLQQ----IETLVVDEADMIFAFGYEKDFKRLMKHLPPIYQAILVSATITDDVV 208
Query: 109 KLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKAL 168
++K L L N L L E V E + I E DK + LLKL L+Q K++
Sbjct: 209 RMKGLCLKNAITLKLEEPELVSLEQLTHQ----RILAEENDKPAILCALLKLTLIQGKSI 264
Query: 169 IFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE 228
IF NT+D ++++LFLE+FGI+S +LN+ELP N R+H + +FN G +D +IA+D+ E
Sbjct: 265 IFVNTVDRCYKVRLFLEQFGIRSCVLNSELPANMRIHTISQFNRGTYDIIIASDE-HILE 323
Query: 229 KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
K RKS+ D E RGIDF+ V+ VINF+ P++ Y+HR GRT
Sbjct: 324 KPAGK-----TQRKSQHS-----DHESSTSRGIDFQGVNNVINFDFPRDVTSYIHRAGRT 373
Query: 289 GRAYNTGASVSLVSPDEM------------------------------------------ 306
R N G+ +S VS E+
Sbjct: 374 ARGNNKGSVLSFVSVKELPINLAVEEKLRSTFGRETLHKKDNAVTLPSSSSSDDNKKADN 433
Query: 307 -KIFEEIK-SFVGDDENEDSNIIAPFPLLAQ---NAVESLRYRAEDVAKSVTKIAVRESR 361
K E++K SF E +I+ + Q VE+ RYRA+D ++ T++AV ++R
Sbjct: 434 SKTVEQLKRSFANSLERPQEDIVDDIIKIYQFKMEEVEAFRYRAQDCWRAATRVAVHDTR 493
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACK 421
++++ EILN EKLK FE N +DL L+HDK SHL VP+Y+L
Sbjct: 494 IREIKTEILNCEKLKGFFEENKRDLQALRHDKPSRTIKVHSHLAHVPEYILPK------- 546
Query: 422 MVKLARAAMG------NKNSSRRQGPRRKFRK--SDPLKSFSAEPTKRAGKGRMKR 469
L R A+G +R G + F++ +DPL + KR G+ + KR
Sbjct: 547 --ALKRVAIGPPPTHTAYKQARTTGAKAAFQRQSNDPLMVSEVDYGKRRGRPKSKR 600
>gi|402863584|ref|XP_003896087.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Papio anubis]
Length = 506
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 236/443 (53%), Gaps = 64/443 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ ++ RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSASQRAMLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR
Sbjct: 286 CVLNGELPLRSRAS---------------------------------------------- 299
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 300 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPPEQSHLGK 359
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 360 IEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 416
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL VPDYL+ + + K +
Sbjct: 417 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALRGLVRPHKKRK---- 472
Query: 432 NKNSSRRQGPRRKFRKSDPLKSF 454
K SS R+ RK + +PL+SF
Sbjct: 473 -KLSSCRKA--RKAKSQNPLRSF 492
>gi|392579442|gb|EIW72569.1| hypothetical protein TREMEDRAFT_72807 [Tremella mesenterica DSM
1558]
Length = 606
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 163/459 (35%), Positives = 250/459 (54%), Gaps = 82/459 (17%)
Query: 16 VQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLL 74
+ + ++ +S LRA PDI+++TP + +L+S+ L +LV+DEADL+
Sbjct: 124 ITIYNASSSSTLRA---DSPDIIVSTPSRL-----LTLLESRQVDLTHLVLLVIDEADLV 175
Query: 75 LSYGYEDDLKAL----SAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
LSYG++++L+ L IPR G Q LMSAT +V +K +ILHNP ILTL
Sbjct: 176 LSYGHKEELQRLCDPNEGWIPRLGVQGCLMSATLGEEVQSIKGMILHNPAILTL------ 229
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
E + Q++ SERDK L + LLKL+L++ K+++F NT+D + +KLFLE+FGI
Sbjct: 230 -SEPTSSLLTQYYTHTSERDKFLLLYVLLKLKLIRGKSIVFVNTVDRGYMVKLFLEQFGI 288
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR-------- 241
KS ++NAELP SR H++EEFN G++D ++ATD+ + +E V++
Sbjct: 289 KSCVVNAELPLGSRYHVVEEFNRGVYDVIVATDEVAGDGEPPEEESQSVEAELDEGAEEG 348
Query: 242 ---------------------------KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
++K K + D + RGIDF + +VINF++
Sbjct: 349 GEGNDAAEEVAEEKKAGSSKRKVPPPLNNRKRQKRQKDPASSLARGIDFTSASSVINFDL 408
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLV------SPDEMK------------IFEEIKSFV 316
P N Y+HR+GRT RA ++G S+S + S D+++ ++E I V
Sbjct: 409 PTNPTAYMHRVGRTARAGHSGLSLSFIVSRSKWSQDKLRQVSLSTAEHDEEVWERILYRV 468
Query: 317 ---GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 373
G E ++ + ++ ++ RYR ED KSVT V+++R +++R E+LNSE
Sbjct: 469 SKEGGGEMKEWDWGG-----RKSEIDGFRYRMEDALKSVTTKRVQDARREEVRRELLNSE 523
Query: 374 KLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
KLKAHF NP DL+ L+HD L SHL+ VP YL+
Sbjct: 524 KLKAHFAANPLDLNYLRHDAPLHPARIQSHLKHVPSYLM 562
>gi|126303427|ref|XP_001379754.1| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Monodelphis domestica]
Length = 495
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 199/335 (59%), Gaps = 26/335 (7%)
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
A + +PR Q LMSAT + DV LK+L+LHNP L L E P +QQF +
Sbjct: 125 AFQSHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPDQLQQFQVV 180
Query: 145 C-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
C +E DK L + LLKL L++ K+L+F NT++ +RL+LFLE+F I + +LN ELP SR
Sbjct: 181 CETEEDKFLLLYALLKLSLLRGKSLLFVNTLERGYRLRLFLEQFSIPACVLNGELPLRSR 240
Query: 204 LHILEEFNAGLFDYLIATDDT------QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 257
HI+ +FN G +D +IATD+ + K + Q +G D+E GV
Sbjct: 241 CHIISQFNQGFYDCVIATDEEVLGAPFKGKRRGQGSKGERAS------------DTESGV 288
Query: 258 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RGIDF NV V+NF++P + Y+HR GRT RA N G +++ V P E +EI+ +G
Sbjct: 289 ARGIDFHNVTAVLNFDLPPSPEAYIHRAGRTARANNPGTALTFVLPTERPQLKEIEEALG 348
Query: 318 DDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKA 377
+ E ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SEKLK
Sbjct: 349 GESAE--SMFLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKT 405
Query: 378 HFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+FE NP+DL LL+HD+ L HL VPDYL+
Sbjct: 406 YFEDNPRDLQLLRHDRPLHPAVVKPHLGHVPDYLV 440
>gi|403278479|ref|XP_003930832.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Saimiri boliviensis boliviensis]
Length = 507
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 159/443 (35%), Positives = 231/443 (52%), Gaps = 63/443 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V +++ ++ RA L PD+++ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAVEDSASQRAVLMEKPDVIVGTPS---RILSHLQQDSLKLRDSLELLVMDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + TLLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYTLLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR
Sbjct: 286 CVLNGELPLRSRAS---------------------------------------------- 299
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 300 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGVVLTFVLPTEQSHLGK 359
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 360 IEELLSGENR--GPILLPYQFQMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 416
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 417 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKK 470
Query: 432 NKNSSRRQGPRRKFRKSDPLKSF 454
K S ++ + +PL SF
Sbjct: 471 RKKLSSSCRKAKRVKSQNPLHSF 493
>gi|426227859|ref|XP_004008032.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Ovis aries]
Length = 512
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 159/447 (35%), Positives = 239/447 (53%), Gaps = 66/447 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + L L+ DS+++LV+DEAD
Sbjct: 113 IRVANVSAAEDLASQRAVLMEKPDVVVGTPSRILNHLQQDNLK---LRDSMELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+L+LHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELVLHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPA 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR
Sbjct: 286 CVLNGELPLRSRAS---------------------------------------------- 299
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 300 DPEAGVARGIDFHHVCAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQSQLGK 359
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + D + ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 360 IEELLSGDSG--APVLLPYQFHMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 416
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL +VPDYL+ T +V A +
Sbjct: 417 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGNVPDYLVQLLT-----LVPPALRGLV 471
Query: 432 NKNSSRRQGP----RRKFRKSDPLKSF 454
+ + R++ P +K + +PL+SF
Sbjct: 472 HPHKKRKKPPTSKKAKKAKTQNPLRSF 498
>gi|47228579|emb|CAG05399.1| unnamed protein product [Tetraodon nigroviridis]
Length = 447
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 140/328 (42%), Positives = 190/328 (57%), Gaps = 13/328 (3%)
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P+ Q LMSAT S DV LK+L+LHNP IL L + + D +QQ+ I C E D
Sbjct: 127 LPKIYQSFLMSATLSEDVQSLKELLLHNPVILKL-QGSQLPDS---SQLQQYSIKCEEED 182
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K L I TLLKL LVQ K L+F +D ++RLKLFLE+FGI S +LN+ELP SR HI+ +
Sbjct: 183 KFLLIYTLLKLRLVQGKTLLFVGAVDRSYRLKLFLEQFGIPSCVLNSELPVGSRCHIISQ 242
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL-----DSEFGVVRGIDFK 264
FN G +DY+IA D+ V + K KK D EFGV RG+DF+
Sbjct: 243 FNQGFYDYIIAADEQSLAVPAVGAASADVTATKGKKKKTPDKGGKSKDKEFGVSRGVDFQ 302
Query: 265 NVHTVINFEMPQNAAGYVH-RIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED 323
NV VINF+ P Y+H R T A + L P + I + + ++
Sbjct: 303 NVSNVINFDFPTTVESYIHRVGRNGRRGGTTPARLCLSYPTKRWIC--CQRWRKLSQDHS 360
Query: 324 SNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNP 383
+++ P+ + +E RYR D +SVTK AV+E+R ++++ E+LNSEKLK +FE NP
Sbjct: 361 GSVLKPYEFKMEE-IEGFRYRCRDAMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNP 419
Query: 384 KDLDLLKHDKDLSKKPPASHLRDVPDYL 411
+DL LL+HDKDL HLR++PDYL
Sbjct: 420 RDLQLLRHDKDLHPAVVKPHLRNLPDYL 447
>gi|380692328|ref|NP_001244118.1| probable ATP-dependent RNA helicase DDX56 isoform 2 [Homo sapiens]
gi|426356103|ref|XP_004045431.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 isoform 2
[Gorilla gorilla gorilla]
Length = 507
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 164/445 (36%), Positives = 234/445 (52%), Gaps = 67/445 (15%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR
Sbjct: 286 CVLNGELPLRSRAS---------------------------------------------- 299
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 300 DPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGK 359
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 360 IEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 416
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 417 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKK 470
Query: 432 NK--NSSRRQGPRRKFRKSDPLKSF 454
K +SS R+ R K +PL+SF
Sbjct: 471 RKKLSSSCRKAKRAK--SQNPLRSF 493
>gi|410058883|ref|XP_003951047.1| PREDICTED: probable ATP-dependent RNA helicase DDX56 [Pan
troglodytes]
Length = 507
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 164/445 (36%), Positives = 234/445 (52%), Gaps = 67/445 (15%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVICETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+LN ELP SR
Sbjct: 286 CVLNGELPLRSRAS---------------------------------------------- 299
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E GV RGIDF +V V+NF++P Y+HR GRT RA N G ++ V P E +
Sbjct: 300 DLEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGIVLTFVLPTEQFHLGK 359
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + I+ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+
Sbjct: 360 IEELLSGENR--GPILLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLH 416
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK +FE NP+DL LL+HD L HL VPDYL+ + L R
Sbjct: 417 SEKLKTYFEDNPRDLQLLRHDLPLHPAVVKPHLGHVPDYLVPPALR------GLVRPHKK 470
Query: 432 NK--NSSRRQGPRRKFRKSDPLKSF 454
K +SS R+ R K +PL+SF
Sbjct: 471 RKKLSSSCRKAKRAK--SQNPLRSF 493
>gi|367029669|ref|XP_003664118.1| hypothetical protein MYCTH_2081249 [Myceliophthora thermophila ATCC
42464]
gi|347011388|gb|AEO58873.1| hypothetical protein MYCTH_2081249 [Myceliophthora thermophila ATCC
42464]
Length = 873
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 162/490 (33%), Positives = 258/490 (52%), Gaps = 89/490 (18%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ +LT ++ + R+ LA PD+V++TP +S+ S L+ LVLDEAD
Sbjct: 418 IHAARLTENVSDAVQRSLLANVPDVVVSTPARAWHSVSS----SALSLAKLQHLVLDEAD 473
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D++ +S +P+G Q ++MSAT S+++D LK + NP +L L E +DE
Sbjct: 474 LVLSYGYDEDMENISRSLPKGVQTIMMSATLSAELDALKGIFCRNPTVLDLHEEFGAEDE 533
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF++ CSE DK L + KL+L++ LIF ID ++RLKLF E+F I+S
Sbjct: 534 ----KLTQFYVKCSEEDKWLISYLIFKLQLIKGPCLIFVADIDRSYRLKLFFEQFSIRSC 589
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDD-------------------------TQTK 227
+LN+ELP N+R+ I+EEFN G++D +IA+D+
Sbjct: 590 VLNSELPINTRIKIIEEFNRGIYDIIIASDEKSELFGDEAADAEEEKKKKKQKQKSNSND 649
Query: 228 EKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
E ++ DEG + + KK + K D E+GV R GR
Sbjct: 650 EAEKKDEG----AEQPKKKRRYKKDEEYGVSR--------------------------GR 679
Query: 288 TGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENED------------SNIIAPFPLLAQ 335
T RA G ++S V P E+ + + +++E + + P+ +
Sbjct: 680 TARAGRAGIALSFVVPKELHGKHKPTTIKSTEKDEKVLAKVMRQQAKLNRKLEPYN-FNK 738
Query: 336 NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDL 395
+ +E+ RYR D ++VTK+A+RE+R ++LR E+L SE LK +FE NP +L L+HD +L
Sbjct: 739 SQMEAFRYRMNDALRAVTKVAIREARTKELRQELLRSEALKRYFEENPTELAHLRHDGEL 798
Query: 396 ---SKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAM----GNKNSSRRQGPR-RKFR- 446
+++ P HL+ VPDYLL + ++A ++ + G R+ P+ R F+
Sbjct: 799 GHATRQQP--HLKHVPDYLLPKEGKKALASEQIGFVPLKKLDGKDRRHRKGKPKGRSFKV 856
Query: 447 --KSDPLKSF 454
K DPLK+F
Sbjct: 857 GGKKDPLKTF 866
>gi|412994181|emb|CCO14692.1| predicted protein [Bathycoccus prasinos]
Length = 668
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 166/458 (36%), Positives = 246/458 (53%), Gaps = 64/458 (13%)
Query: 21 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGY 79
S ++ +R A PD++++TP + +CL + KS + D L+++VLDE DLLLS+G+
Sbjct: 138 SSASAAVREAARNCPDVLVSTPARVAQCLKDKLFPPKSVNGDGLEMMVLDECDLLLSFGH 197
Query: 80 EDDLKALSAVIPRGCQCLLMSATSSSD-VDKLKKLILHNPYILTLPEVGDVKDEVIPKN- 137
E D+K + G Q +++SAT++S+ V LK L+L P + +V +++ + +
Sbjct: 198 EKDIKYIFERCREGVQTVMVSATTTSEEVGNLKSLLLSKPAEVDCDDVEEMEQKEREERE 257
Query: 138 ------------VQQFW--ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
+ F I + DKLLY++ LL+L L +KK LIF D A R +LF
Sbjct: 258 MRKELKKKKKPLITHFGLEIKKGKNDKLLYLMALLRLGLCKKKILIFVKDADEAVRARLF 317
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE--------------- 228
L KFG+ L++ELP NSR HILEEFN G+ D L+A + +
Sbjct: 318 LHKFGVLCVALHSELPANSRAHILEEFNRGVHDVLVAAAEDDSSSNSSNDGSNANEKENA 377
Query: 229 ---------KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAA 279
+ K K++ AK DSEFGV RG+DFK VHTVINFE+P+
Sbjct: 378 KEEEEEEEEQPTRKSKKERKKEKEKRNQAAKKDSEFGVSRGVDFKKVHTVINFEVPKTFE 437
Query: 280 GYVHRIGRTGRAYNTGASVSLVSP-DEMKIFEEIKSFVGDDENEDSN------------- 325
Y HR+GRTGRA TG +++ P DE +K + +
Sbjct: 438 AYQHRVGRTGRAGATGVAITFFGPSDEEAYHVLLKGYADAAAVAKAAEAKEEDDDEEEDE 497
Query: 326 --------IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKA 377
+ PF L + A E+LRYRAED +S++K AV+++R ++LR E+LNSE+L +
Sbjct: 498 REEEDVDDFLKPFERLPKEATEALRYRAEDTLRSISKSAVKDARLRELRVELLNSERLAS 557
Query: 378 HFEVNPKDLDLLKHDKDLSKKPPAS-HLRDVPDYLLDA 414
HFE NP DL+LL+HD +SK+ A+ HL +P YL +A
Sbjct: 558 HFEENPDDLNLLRHDSSISKRDDANKHLSHLPAYLRNA 595
>gi|58262184|ref|XP_568502.1| hypothetical protein CNM02050 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118521|ref|XP_772034.1| hypothetical protein CNBM1920 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818062|sp|P0CR11.1|DBP9_CRYNB RecName: Full=ATP-dependent RNA helicase DBP9
gi|338818063|sp|P0CR10.1|DBP9_CRYNJ RecName: Full=ATP-dependent RNA helicase DBP9
gi|50254640|gb|EAL17387.1| hypothetical protein CNBM1920 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230675|gb|AAW46985.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 627
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 171/470 (36%), Positives = 244/470 (51%), Gaps = 74/470 (15%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
+ + C G VQ V ++ AS R L PDIVI+TP L + +
Sbjct: 122 VTKYCDGLVQCVDV---AAGGASIQRVLLNDKPDIVISTP----TKLLSLLQSKSLSLSQ 174
Query: 63 LKILVLDEADLLLSYGYEDDLKAL----SAVIPR-GCQCLLMSATSSSDVDKLKKLILHN 117
L L +DEADLLLSYG++DDL + S IP+ G Q LMSAT S DV+ +K L+L N
Sbjct: 175 LSFLAIDEADLLLSYGFKDDLTRIMDPTSGWIPKLGVQGCLMSATLSDDVEGIKGLVLRN 234
Query: 118 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
P ILTL E + Q + SERDK L I LLKL+L++ K++IF N ++
Sbjct: 235 PAILTLSEPASASSLL-----SQHYTHTSERDKFLLIYVLLKLKLIRGKSIIFVNDVERG 289
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG- 236
+R+KLFLE+FG+K ++N+ELP SR H++EEFN G++D ++ATD+ + ++ ++
Sbjct: 290 YRVKLFLEQFGVKCCVVNSELPLASRYHVVEEFNRGVYDVVVATDEGAGADAEEEEDVKQ 349
Query: 237 -------------------------------------HVDSRKSKKHPKA-KLDSEFGVV 258
S SK + +A + D +
Sbjct: 350 EESESEGEEDEDDDKEAEDKEKEAKEEAKPAPGPSKRRATSPPSKPNKRARRADPTSSLA 409
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE------------- 305
RGIDF + +VINF++P + Y+HR+GRT RA +G ++S V P E
Sbjct: 410 RGIDFTSASSVINFDLPLTSTSYMHRVGRTARAGQSGLALSFVVPRENWGKDKAVSIKSA 469
Query: 306 ---MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRA 362
K+FE IK V + DS I + +E RYR ED K+VT V E+R
Sbjct: 470 EKDEKVFERIKERV--KKESDSEIKEWDWKGRKGEIEGFRYRMEDALKAVTGKRVAEARR 527
Query: 363 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+++R E+LNSEKLK+HF NP DL L+HD L +HL+ VP+YL+
Sbjct: 528 EEVRRELLNSEKLKSHFAANPLDLSYLRHDAPLHPARQQTHLKHVPNYLM 577
>gi|321265279|ref|XP_003197356.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317463835|gb|ADV25569.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 627
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 169/471 (35%), Positives = 241/471 (51%), Gaps = 76/471 (16%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
+ + C+G VQ V S S R L PDIVI+TP L + +
Sbjct: 122 VTKYCEGLVQCVDVAAGGS---SIQRVLLNDKPDIVISTP----TKLLSLLQSKSLSLSE 174
Query: 63 LKILVLDEADLLLSYGYEDDLKAL----SAVIPR-GCQCLLMSATSSSDVDKLKKLILHN 117
L L +DEADLLLSYG++DDL + IP+ G Q LMSAT S DV+ +K LIL N
Sbjct: 175 LSFLAIDEADLLLSYGFKDDLTRIMDPTCGWIPKLGVQGCLMSATLSDDVEGIKGLILRN 234
Query: 118 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
P ILTL E + Q + SERDK L I LLKL+L++ K++IF N ++
Sbjct: 235 PAILTLSEPAAASSLL-----TQHYTHTSERDKFLLIYVLLKLKLIRGKSIIFVNDVERG 289
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKE--------- 228
+R+KLFLE+FG+K ++N+ELP SR H++EEFN G++D ++ATD+ +
Sbjct: 290 YRVKLFLEQFGVKCCVVNSELPLASRYHVVEEFNRGVYDVIVATDEGAGADAEEEEDVKQ 349
Query: 229 ------------------------KDQSDEGGHVDSRKSKKHPKA------KLDSEFGVV 258
K +++ R++ P + D +
Sbjct: 350 EENESEEEEGEDADEEAKDEEKETKGEAEPAAGPSKRRAASPPSKPNKRARRADPTSSLA 409
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------------ 306
RGIDF + +VINF++P + Y+HR+GRT RA +G ++S V P E
Sbjct: 410 RGIDFTSASSVINFDLPLTSTSYMHRVGRTARAGQSGLALSFVVPREKWGKDKAVSIKSA 469
Query: 307 ----KIFEEIKSFVGDDENEDSNIIAPFPLLAQNA-VESLRYRAEDVAKSVTKIAVRESR 361
K+FE IK V + E + I + + +E RYR ED K+VT V E+R
Sbjct: 470 EKDEKVFERIKERV---KKESGSEIKEWDWGGRKGEIEGFRYRMEDALKAVTGKRVAEAR 526
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+++R E+LNSEKLK+HF NP DL L+HD L +HL+ VP+YL+
Sbjct: 527 REEVRRELLNSEKLKSHFAANPLDLSYLRHDAPLHPTRQQTHLKHVPNYLM 577
>gi|406694736|gb|EKC98058.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 644
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 174/452 (38%), Positives = 246/452 (54%), Gaps = 68/452 (15%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDE 70
+L+ QL + A R L PDIV+ATP K L+ +LQSKS + L L +DE
Sbjct: 155 ELQPSQLNPQVQALTSRILLNDNPDIVVATP---TKLLA--LLQSKSIDLAHLAFLAIDE 209
Query: 71 ADLLLSYGYEDDLK-----ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125
ADLLLSYG++DDL A+ V G Q LMSAT S DV+ +K L+L NP ILTL E
Sbjct: 210 ADLLLSYGHKDDLTRIMDPAMGFVPKLGVQGCLMSATLSEDVEGVKGLVLRNPAILTLSE 269
Query: 126 VGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 185
+ Q F S SERDK L + LLKL+L++ K++IF N I+ +R++LFLE
Sbjct: 270 PATASSLL----TQHFTFS-SERDKFLLLFVLLKLKLIKGKSIIFVNDIERGYRVRLFLE 324
Query: 186 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ-------------------- 225
+FGIK ++N+ELP SR H++EEFN G++ +IATD+
Sbjct: 325 QFGIKCCVVNSELPLASRYHVVEEFNRGVYQVVIATDEASLGDEEPEDEEEESEAEEDAE 384
Query: 226 TKEKDQSDEGGHVDSRKSKKHPKA----KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGY 281
++++++ E G R S P A K + + RGIDF + +VINF++P Y
Sbjct: 385 EEQEEKNAEAGPSKRRASSPAPGAPGKKKKRNAGSMARGIDFTSASSVINFDLPTTTTAY 444
Query: 282 VHRIGRTGRAYNTGASVSLVSPDEM----------------KIFEEIKSFV-----GDDE 320
+HR+GRT RA ++G ++S V P + ++F+ IKS V GD +
Sbjct: 445 LHRVGRTARAGHSGLALSFVVPKDQWGKDKSVSIKTAERDEQVFDRIKSKVKAEGGGDIK 504
Query: 321 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 380
D + +E RYR ED ++VT V ++R +++R E+LNSEKLK HF
Sbjct: 505 EWDWGG-------RRGEIEGFRYRMEDALRAVTSKRVSDARREEVRRELLNSEKLKQHFA 557
Query: 381 VNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
NP DL L+HD L +SHL+ VP YL+
Sbjct: 558 ANPLDLAYLRHDAPLHPGRTSSHLKHVPGYLM 589
>gi|401885210|gb|EJT49333.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 614
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 169/429 (39%), Positives = 237/429 (55%), Gaps = 68/429 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLK-----ALSA 88
PDIV+ATP K L+ +LQSKS + L L +DEADLLLSYG++DDL A+
Sbjct: 148 PDIVVATP---TKLLA--LLQSKSIDLAHLAFLAIDEADLLLSYGHKDDLTRIMDPAMGF 202
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V G Q LMSAT S DV+ +K L+L NP ILTL E + Q F S SER
Sbjct: 203 VPKLGVQGCLMSATLSEDVEGVKGLVLRNPAILTLSEPATASSLL----TQHFTFS-SER 257
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
DK L + LLKL+L++ K++IF N I+ +R++LFLE+FGIK ++N+ELP SR H++E
Sbjct: 258 DKFLLLFVLLKLKLIKGKSIIFVNDIERGYRVRLFLEQFGIKCCVVNSELPLASRYHVVE 317
Query: 209 EFNAGLFDYLIATDDTQ--------------------TKEKDQSDEGGHVDSRKSKKHPK 248
EFN G++ +IATD+ ++++++ E G R S P
Sbjct: 318 EFNRGVYQVVIATDEASLGDEEPEDEEEESEAEEDAEEEQEEKNAEAGPSKRRASSPAPG 377
Query: 249 A----KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
A K S + RGIDF + +VINF++P Y+HR+GRT RA ++G ++S V P
Sbjct: 378 APGKKKKRSAGSMARGIDFTSASSVINFDLPTTTTAYLHRVGRTARAGHSGLALSFVVPK 437
Query: 305 EM----------------KIFEEIKSFV-----GDDENEDSNIIAPFPLLAQNAVESLRY 343
+ ++F+ IKS V GD + D + +E RY
Sbjct: 438 DQWGKDKSVSIKTAERDEQVFDRIKSKVKAEGGGDIKEWDWGG-------RRGEIEGFRY 490
Query: 344 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASH 403
R ED ++VT V ++R +++R E+LNSEKLK HF NP DL L+HD L +SH
Sbjct: 491 RMEDALRAVTSKRVSDARREEVRRELLNSEKLKQHFAANPLDLAYLRHDAPLHPGRTSSH 550
Query: 404 LRDVPDYLL 412
L+ VP YL+
Sbjct: 551 LKHVPGYLM 559
>gi|154416022|ref|XP_001581034.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121915258|gb|EAY20048.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 522
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 148/419 (35%), Positives = 233/419 (55%), Gaps = 55/419 (13%)
Query: 5 ELCKGQVQLKV------VQLTSSMPASDLRAAL------AGPPDIVIATPGCMPKCLSTG 52
ELCK QV+ + ++TS+ D+ AA A PP ++I TP
Sbjct: 90 ELCK-QVKSQFDELAHYCRITSAHLGEDVSAATQKVTLAANPPAVLIGTPA------RVS 142
Query: 53 VLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKK 112
L+S F +++ LV+DEAD L + + D++A+ + +P Q LMSAT +V +L K
Sbjct: 143 ALESMDFFKNVQFLVVDEADQQLGFDHGADIEAIISKLPPTRQSFLMSATLEKNVQELTK 202
Query: 113 LILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTN 172
L+L+NP + DV +E +Q ++I+ +E ++ + + TL+++ + K+ L+F N
Sbjct: 203 LVLNNPVFV------DVTEEQQQSLLQHYFINVTEDNRYMVLYTLIQIGRLGKRILLFVN 256
Query: 173 TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQS 232
+I+ F+L LFLE+ IKS++LN++LP SR+ ILE FN G D L+A D+
Sbjct: 257 SINRGFKLCLFLERMHIKSSVLNSQLPVASRISILESFNHGKVDVLVAIDE--------- 307
Query: 233 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 292
G D + +EF RG+DF+N+H+V+NF++P YVHR+GRT R
Sbjct: 308 ---GDDD-----------VLAEFSAARGVDFQNLHSVVNFDIPLKYDQYVHRVGRTARGN 353
Query: 293 NTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSV 352
G +V+ V + E I +G+ D+ +AP ++A E RYR V +S+
Sbjct: 354 REGMAVTFVG-----VNENINQ-IGESLAADNQTLAPLDFDTKSA-EGFRYRVNSVLESI 406
Query: 353 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYL 411
T+ ++E++ ++ EILN+EKLK+HFE NPKDL +LKHD L + LR +PDYL
Sbjct: 407 TRHQIKEAQKIYIKREILNAEKLKSHFEENPKDLQILKHDTTLIPEKVNPALRQIPDYL 465
>gi|393911673|gb|EFO27871.2| DEAD/DEAH box helicase [Loa loa]
Length = 629
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/388 (37%), Positives = 230/388 (59%), Gaps = 23/388 (5%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
PD V++TP + LS + +S+K +VLDEADLLLS+GY ++++ + +P
Sbjct: 206 PDFVVSTPSRFLQALS----KYGKPCESVKHVVLDEADLLLSFGYSEEMRLIKNFLPTHH 261
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--QFWISC-SERDKL 151
Q + SAT + V+ LK+L + P IL +K+ +P + Q Q+ ISC +E ++
Sbjct: 262 QTIFTSATMTEKVEALKELYVTGPIILM-----KLKEGQLPNSDQLSQYHISCQNEEERF 316
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
L LLKL+L+ K++IF D ++L LFL+ F I+S ILNA++P NSR H++E+FN
Sbjct: 317 AIFLALLKLKLIIGKSIIFVRDTDRCYQLGLFLQAFNIRSCILNAQMPVNSRCHVVEQFN 376
Query: 212 AGLFDYLIATD------DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
G + Y+IA+D D+Q KD+ D+G + +K + +D E GV RGIDF +
Sbjct: 377 EGRYSYVIASDINDVSCDSQAVMKDE-DDGNVSRKERIRKKKQKHIDRESGVSRGIDFHH 435
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 325
V VINF+ P + Y+HR+GRT R +N G ++S VSP E EE++ + +
Sbjct: 436 VANVINFDFPTSLNSYIHRVGRTARGWNKGNALSFVSPQEKPFLEEVQDEINAQLGHRA- 494
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
I P+ + + +ES RA +V + TK A+RE+R ++R E+L S++L+A+F NP++
Sbjct: 495 -ITPYEVRIKE-LESFFLRAREVLVACTKTAIREARLAEIRAEVLRSKRLEAYFAKNPRE 552
Query: 386 LDLLKHDKDL-SKKPPASHLRDVPDYLL 412
L+HDK L S + + DVPDY++
Sbjct: 553 RAALEHDKKLFSVNLHSPAIADVPDYMV 580
>gi|312066294|ref|XP_003136202.1| DEAD/DEAH box helicase [Loa loa]
Length = 621
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 146/388 (37%), Positives = 230/388 (59%), Gaps = 23/388 (5%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
PD V++TP + LS + +S+K +VLDEADLLLS+GY ++++ + +P
Sbjct: 198 PDFVVSTPSRFLQALS----KYGKPCESVKHVVLDEADLLLSFGYSEEMRLIKNFLPTHH 253
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--QFWISC-SERDKL 151
Q + SAT + V+ LK+L + P IL +K+ +P + Q Q+ ISC +E ++
Sbjct: 254 QTIFTSATMTEKVEALKELYVTGPIILM-----KLKEGQLPNSDQLSQYHISCQNEEERF 308
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
L LLKL+L+ K++IF D ++L LFL+ F I+S ILNA++P NSR H++E+FN
Sbjct: 309 AIFLALLKLKLIIGKSIIFVRDTDRCYQLGLFLQAFNIRSCILNAQMPVNSRCHVVEQFN 368
Query: 212 AGLFDYLIATD------DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
G + Y+IA+D D+Q KD+ D+G + +K + +D E GV RGIDF +
Sbjct: 369 EGRYSYVIASDINDVSCDSQAVMKDE-DDGNVSRKERIRKKKQKHIDRESGVSRGIDFHH 427
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 325
V VINF+ P + Y+HR+GRT R +N G ++S VSP E EE++ + +
Sbjct: 428 VANVINFDFPTSLNSYIHRVGRTARGWNKGNALSFVSPQEKPFLEEVQDEINAQLGHRA- 486
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
I P+ + + +ES RA +V + TK A+RE+R ++R E+L S++L+A+F NP++
Sbjct: 487 -ITPYEVRIKE-LESFFLRAREVLVACTKTAIREARLAEIRAEVLRSKRLEAYFAKNPRE 544
Query: 386 LDLLKHDKDL-SKKPPASHLRDVPDYLL 412
L+HDK L S + + DVPDY++
Sbjct: 545 RAALEHDKKLFSVNLHSPAIADVPDYMV 572
>gi|402589981|gb|EJW83912.1| DEAD/DEAH box helicase [Wuchereria bancrofti]
Length = 452
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 230/395 (58%), Gaps = 29/395 (7%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
PD V++TPG + L + +S+K +VLDEADLLLS+GY ++++ + +P
Sbjct: 21 PDFVVSTPGRLLHALK----KYGKPCESVKHVVLDEADLLLSFGYAEEMRLIKDFLPTHH 76
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ--QFWISC-SERDKL 151
Q + SAT + +V+ LK+L + +L +K+ +P + Q Q+ ISC +E ++
Sbjct: 77 QTIFTSATMTENVEALKELYVTGSIVLM-----KLKEGQLPSSDQLSQYHISCQNEEERF 131
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
L LLKL+L+ K++IF D ++L LFL+ F I+S ILNA++P NSR H++E+FN
Sbjct: 132 AIFLALLKLKLIVGKSIIFVKDTDRCYQLGLFLQAFNIRSCILNAQMPINSRCHVVEQFN 191
Query: 212 AGLFDYLIATD------DTQTKEKDQSDEG-------GHVDSRKSKKHPKAKLDSEFGVV 258
G + Y+IA+D ++Q KD+ DE ++ +K K + +D E GV
Sbjct: 192 EGRYSYVIASDINDVSGESQAVMKDEDDEDVCHNFIFRYLKRKKIHKKKRKHIDKESGVS 251
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
RGIDF +V VINF+ P + Y+HR+GRT R +N G ++S SP E EE++ +
Sbjct: 252 RGIDFHHVANVINFDFPTSLNSYIHRVGRTARGWNKGNALSFASPQEKPFLEEVQEEINA 311
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 378
+ I P+ + + +ES RA +V + TK A+RE+R ++R EIL S++L+A+
Sbjct: 312 QLGHRA--ITPYEVRIKE-LESFVLRAREVLAACTKTAIREARLAEIRAEILRSKRLEAY 368
Query: 379 FEVNPKDLDLLKHDKDL-SKKPPASHLRDVPDYLL 412
F NP++ L+HDK L S + + DVPDY++
Sbjct: 369 FAKNPRERAALEHDKKLFSVNLHSPAIADVPDYMV 403
>gi|405123669|gb|AFR98433.1| ATP-dependent RNA helicase DBP9 [Cryptococcus neoformans var.
grubii H99]
Length = 625
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 169/470 (35%), Positives = 246/470 (52%), Gaps = 75/470 (15%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
+ + C+G VQ V ++ AS R L PDIVI+TP L + +
Sbjct: 121 VTKYCEGLVQCVDV---AAGGASIQRVLLNDKPDIVISTP----TKLLSLLQSKSLSLSQ 173
Query: 63 LKILVLDEADLLLSYGYEDDLKAL----SAVIPR-GCQCLLMSATSSSDVDKLKKLILHN 117
L +L +DEADLLLSYG++DDL + S IP+ G Q LMSAT S DV+ +K L+L N
Sbjct: 174 LSLLAIDEADLLLSYGFKDDLTRIMDPTSGWIPKLGVQGCLMSATLSDDVEGIKGLVLRN 233
Query: 118 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
P ILTL E + Q + SERDK L I LLKL+L++ K++IF N ++
Sbjct: 234 PAILTLSEPAAASSLL-----AQHYTHTSERDKFLLIYVLLKLKLIRGKSIIFVNDVERG 288
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG- 236
+R+KLFLE+FG+K ++N+ELP SR H++EEFN G++D ++ATD+ + ++ ++
Sbjct: 289 YRVKLFLEQFGVKCCVVNSELPLASRYHVVEEFNRGVYDVVVATDEGAGADAEEEEDVKQ 348
Query: 237 ------------------------------------HVDSRKSKKHPKA-KLDSEFGVVR 259
S SK + +A + D + R
Sbjct: 349 EEGESEGEEDEDVDKEAKDEEEAKEDAKPAPGPSKRRATSPPSKPNKRARRADPTSSLAR 408
Query: 260 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM------------- 306
GIDF + +VINF++P + Y+HR+GRT RA +G ++S V P E
Sbjct: 409 GIDFTSASSVINFDLPLTSTSYMHRVGRTARAGQSGLALSFVVPREKWGKDKAVSIKSAE 468
Query: 307 ---KIFEEIKSFVGDDENEDSNIIAPFPLLAQNA-VESLRYRAEDVAKSVTKIAVRESRA 362
K+FE IK + E + I + + +E RYR ED K+VT V E+R
Sbjct: 469 KDEKVFERIKERA---KKESGSEIKEWDWGGRKGEIEGFRYRMEDALKAVTGKRVAEARR 525
Query: 363 QDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+++R E+LNSEKLK+HF NP DL L+HD L +HL+ VP+YL+
Sbjct: 526 EEVRRELLNSEKLKSHFAANPLDLSYLRHDTPLHPTRQQTHLKHVPNYLM 575
>gi|302406528|ref|XP_003001100.1| ATP-dependent RNA helicase DBP9 [Verticillium albo-atrum VaMs.102]
gi|261360358|gb|EEY22786.1| ATP-dependent RNA helicase DBP9 [Verticillium albo-atrum VaMs.102]
Length = 423
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 193/324 (59%), Gaps = 42/324 (12%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L C +Q V+LT + + RA L+ PDIVI+TP + +S+ L + +
Sbjct: 18 SLAAFCAKDIQ--AVKLTDKVSTTVQRALLSANPDIVISTPARAWENVSSSALSLANLTH 75
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
LVLDEADL+LSYGY++DL+ ++ +P+G Q +LMSAT + +VD +K L NP +L
Sbjct: 76 ----LVLDEADLVLSYGYKEDLQNVARSLPKGVQTILMSATLTPEVDTVKGLFCRNPALL 131
Query: 122 TL--PEV-GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
L PE GD + QF + C+E +K L I + KL+L+Q KAL+F + +D ++
Sbjct: 132 DLEQPEAEGD--------GITQFVVKCAEDEKFLLIYVIFKLKLIQGKALVFCHDVDRSY 183
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT------------ 226
+LKL+ E+FGI+S ILNAELP NSRLH+++EFN G++D LIA+DD +
Sbjct: 184 KLKLYFEQFGIRSCILNAELPVNSRLHVVDEFNKGVYDILIASDDNEVVGDEGQEDEGEE 243
Query: 227 -------KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAA 279
KE +S + R S+K D E+GV RGIDFKNV VINF++P +A
Sbjct: 244 ETTEEPKKETKKSKKKQQQQQRASRK------DKEYGVSRGIDFKNVAAVINFDLPTSAK 297
Query: 280 GYVHRIGRTGRAYNTGASVSLVSP 303
Y HRIGRT RA G ++S V P
Sbjct: 298 SYTHRIGRTARAGQRGMALSFVIP 321
>gi|300120597|emb|CBK20151.2| unnamed protein product [Blastocystis hominis]
Length = 568
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 166/501 (33%), Positives = 257/501 (51%), Gaps = 69/501 (13%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L C + + + L+S A + L D+VI+TP + L L S +
Sbjct: 76 SLSRYCSNVINVVSLHLSS---ADQQKGYLNEYTDVVISTPKMLLNHLK---LYSDNILK 129
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
++ ++DEADLLLSYGY++D+ + IP CQ +++SAT + +V LK+ +LHN +
Sbjct: 130 NIHTFIVDEADLLLSYGYKEDMNKVVERIPATCQNIILSATLNEEVSLLKQKLLHNCVTV 189
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E + ++ +F+I SE K L + LL+L +++ K +IF ++++ + L
Sbjct: 190 KLEEENTSER----NDLNEFFIEVSEEKKALLLYALLRLHILKGKVIIFVDSLNFGYFLS 245
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD------------------ 223
+FLE+F +KS +LN ELP SR +I+ +FN G++DYLIATD+
Sbjct: 246 IFLERFSMKSVVLNNELPALSRNNIIHQFNRGMYDYLIATDEGLAQSIPENSEKEENGGN 305
Query: 224 --TQTKE--------KDQSDEGGH----VDSRKSK---------------KHPKAKLDSE 254
T KE +++ DE VDS K K + + E
Sbjct: 306 SGTNAKEDAELLGDSENEKDEDSEIEKDVDSEIEKDDSDDFDLEDSSEPEKETEETQNDE 365
Query: 255 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD---EMKIFEE 311
+ V RGIDF+NV VIN+ MP + + YVHRIGRT RA N G +S + P + +I E
Sbjct: 366 YNVSRGIDFENVAAVINYSMPASVSHYVHRIGRTARAGNLGTPLSFIVPTSDKDQRILAE 425
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
I+ + + PF + + +ES YR E V + +T +R +R LR E LN
Sbjct: 426 IQKYNPPRDGHPVPQRLPFDI---SQIESFSYRVEGVKRGITPNLIRNTRMMQLRKEALN 482
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL-DAKTQEACKMVKLARAAM 430
S KLK HFE NP +L+LL+H P ++LRD+PDYL+ DA ++ A
Sbjct: 483 SSKLKMHFEDNPHELELLQHGLSKQLVRPIAYLRDIPDYLIPDALKPKSNP----EEAKR 538
Query: 431 GNKNSSRRQGPRRKFRKSDPL 451
G++ + + +RK R +DPL
Sbjct: 539 GHEEDEKNKEWKRK-RVADPL 558
>gi|42539171|gb|AAS18604.1| RNA helicase [Choristoneura fumiferana]
Length = 565
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 162/460 (35%), Positives = 250/460 (54%), Gaps = 19/460 (4%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+++ + ++++ +A L+ PDIV+ATP K L+ + D L +LV+DEA
Sbjct: 110 EVRCIDISANGDMQTQKALLSDKPDIVVATPS---KALAHLKANNMRLKDDLAMLVVDEA 166
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
DL+ +GYED++K L +P+ Q +L SAT S DV LKK+ L NP L L +D
Sbjct: 167 DLVFPFGYEDEIKELLGHLPKIYQAVLASATLSDDVLSLKKIGLRNPVTLKL------ED 220
Query: 132 EVIPKNVQQFWISCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ + S S R K + + LKL LV+ K++IF T+D ++LKL+LE+F I
Sbjct: 221 QSWGHHHSYNTSSYSPGRCKSRHFVCPLKLNLVRGKSIIFVRTVDRCYKLKLYLEQFKIG 280
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
S +LN+ELP R +++FN G + ++A+D+ ++ D +K K+ K K
Sbjct: 281 SCVLNSELPAAVRCLSVDQFNRGRYQIIVASDEKALEKPDGGILPIEERQKKKKQASKRK 340
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
D E GV RGIDF++V VINF+ P + YVHR GRT R N+G+ +S VS E + +
Sbjct: 341 RDKESGVSRGIDFQHVSNVINFDFPLDVNSYVHRAGRTARGNNSGSVLSFVSIREKPLMD 400
Query: 311 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
++ + A VE RYR+ D ++VT+IAVRE+R ++++ E+L
Sbjct: 401 PGWRTTYQGGVNGQKVLQKYEF-ALEEVEGFRYRSRDPWRAVTRIAVREARLKEIKQELL 459
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA--KTQEACKMVKLARA 428
N +KL+ +FE NP DL L+ DK L L VP+YLL +T+E + A A
Sbjct: 460 NCKKLQGYFEENPTDLAALRRDKALHTVRVQPQLAHVPEYLLPHALRTEEPEADAEAAEA 519
Query: 429 AMGNKNSSRRQG----PRRKF--RKSDPLKSFSAEPTKRA 462
RRQG R K+ R+++PL+SF+ + +
Sbjct: 520 PAPAPQKKRRQGFGSAKRHKYQARQNNPLRSFNVKSVNKT 559
>gi|300176507|emb|CBK24172.2| unnamed protein product [Blastocystis hominis]
Length = 565
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 167/502 (33%), Positives = 257/502 (51%), Gaps = 74/502 (14%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
+L C + + + L+S A + L D+VI+TP + L L S +
Sbjct: 76 SLSRYCSNVINVVSLHLSS---ADQQKGYLNEYTDVVISTPKMLLNHLK---LYSDNILK 129
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
++ ++DEADLLLSYGY++D+ + IP CQ +++SAT + +V LK+ +LHN +
Sbjct: 130 NIHTFIVDEADLLLSYGYKEDMNKVVERIPATCQNIILSATLNEEVSLLKQKLLHNCVTV 189
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E N+ +F+I SE K L + LL+L +++ K +IF ++++ + L
Sbjct: 190 KLEEEN--------TNLNEFFIEVSEEKKALLLYALLRLHILKGKVIIFVDSLNFGYFLS 241
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD------------------ 223
+FLE+F +KS +LN ELP SR +I+ +FN G++DYLIATD+
Sbjct: 242 IFLERFSMKSVVLNNELPALSRNNIIHQFNRGMYDYLIATDEGLAQSIPENSEKEENGGN 301
Query: 224 --TQTKE--------KDQSDEGGH----VDSRKSK---------------KHPKAKLDSE 254
T KE +++ DE VDS K K + + E
Sbjct: 302 SGTNAKEDAELLGDSENEKDEDSEIEKDVDSEIEKDDSDDFDLEDSSEPEKETEETQNDE 361
Query: 255 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD---EMKIFEE 311
+ V RGIDF+NV VIN+ MP + + YVHRIGRT RA N G ++S + P + +I E
Sbjct: 362 YNVSRGIDFENVAAVINYSMPASVSHYVHRIGRTARAGNLGTALSFIVPTSDKDQRILAE 421
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRY-RAEDVAKSVTKIAVRESRAQDLRNEIL 370
I+ + + PF + + +ES Y R E V + +T +R +R LR E L
Sbjct: 422 IQKYNPPRDGHPVPQRLPFDI---SQIESFSYRRVEGVKRGITPNLIRNTRMMQLRKEAL 478
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL-DAKTQEACKMVKLARAA 429
NS KLK HFE NP +L+LL+H P ++LRD+PDYL+ DA ++ A
Sbjct: 479 NSSKLKMHFEDNPHELELLQHGLSKQLVRPIAYLRDIPDYLIPDALKPKSNP----EEAK 534
Query: 430 MGNKNSSRRQGPRRKFRKSDPL 451
G++ + + +RK R +DPL
Sbjct: 535 RGHEEDEKNKEWKRK-RVADPL 555
>gi|116202485|ref|XP_001227054.1| hypothetical protein CHGG_09127 [Chaetomium globosum CBS 148.51]
gi|88177645|gb|EAQ85113.1| hypothetical protein CHGG_09127 [Chaetomium globosum CBS 148.51]
Length = 1029
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 165/478 (34%), Positives = 254/478 (53%), Gaps = 78/478 (16%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+ +LT ++ + R+ LA PDIV++TP +++ L S S L+ LVLDEAD
Sbjct: 410 IHAAKLTENVSDAVQRSLLANVPDIVVSTPARAWHSVNSSAL---SLS-QLQYLVLDEAD 465
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
L+LSYGY++D++ ++ +P+G Q +MSAT S+++D LK + NP +L L E +DE
Sbjct: 466 LVLSYGYDEDMENIARALPKGVQTTMMSATLSAELDTLKGIFCRNPTVLDLQEEFGAEDE 525
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ QF++ C+E DK L + KL+L++ LIF ID ++RL KF I+S
Sbjct: 526 ----KLTQFYVKCAEDDKWLVSYLVFKLQLIKGPCLIFVADIDRSYRL-----KFSIRSC 576
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDD---------------TQTKEKDQSDEGGH 237
+LN+ELP N+R+ I+EEFN G++D +IA+D+ + K+K ++E G
Sbjct: 577 VLNSELPINTRIKIIEEFNRGIYDIIIASDEKSEVFGDAAADAEAEKEPKKKSNNEEDGA 636
Query: 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
+ KK + K D E+GV R GRT RA G +
Sbjct: 637 --EQPKKKRRQQKKDEEYGVSR--------------------------GRTARAGRAGIA 668
Query: 298 VSLVSPDEM------------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRA 345
+S V P E + E++ + V + + + P+ ++ +E+ RYR
Sbjct: 669 LSFVIPKEFHGKHRPTAIKSTEKDEKVLAKVTRQQEKLGRKLEPYN-FNKSQMEAFRYRM 727
Query: 346 EDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP-PASHL 404
D ++VTK+A+RE+R ++LR E+L SE LK +FE NP +L L+HD +L + HL
Sbjct: 728 NDALRAVTKVAIREARTKELRQELLRSETLKRYFEENPTELSHLRHDGELGRTTRQQPHL 787
Query: 405 RDVPDYLL--DAKTQEACKMVKLAR-AAMGNKNSSRRQG-PR-RKFR---KSDPLKSF 454
+ VPDYLL D K A + V G K+ R+G P+ R FR K DPLK+F
Sbjct: 788 KHVPDYLLPKDGKKALASEHVGFVPFKKEGGKDRKHRKGKPKGRSFRVGGKKDPLKTF 845
>gi|320035635|gb|EFW17576.1| ATP-dependent RNA helicase [Coccidioides posadasii str. Silveira]
Length = 467
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/309 (41%), Positives = 184/309 (59%), Gaps = 38/309 (12%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS---DSLKILVLD 69
++ LT + + RA LA PDI+I+TP + ++ + S S + L LV+D
Sbjct: 128 IRSANLTQKVSDAVQRAILADLPDIIISTP-------ARAIINTNSSSLSLNDLTHLVID 180
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EADL+LSYGYE D++ L+ IPRG Q LLMSAT +S+VD LK L +P IL L E D
Sbjct: 181 EADLVLSYGYEQDMQNLAKAIPRGVQTLLMSATLTSEVDALKGLFCRSPVILKLEEAEDE 240
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+ QF + C+E +K L + KL+LV+ K +IF ID ++RLKLFLE+FGI
Sbjct: 241 G-----AGIAQFAVKCAEDEKFLLTYVIFKLQLVKGKCIIFVGDIDRSYRLKLFLEQFGI 295
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ---------TKEKDQS-------- 232
KS +LN+ELP NSR+H+++EFN G++D +IA DD + +K +QS
Sbjct: 296 KSCVLNSELPVNSRIHVVQEFNKGVYDIIIAADDQEVIGEIPKKGSKTPEQSNGENGDEP 355
Query: 233 -DEGGHVDSRKSKKHPK-----AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIG 286
+E G D + + P + + ++G+ RGIDF++V V+NF++P A Y HRIG
Sbjct: 356 EEEKGFSDEDEVEPPPSKKRKKSTKEKDYGISRGIDFQDVACVLNFDLPTTAKSYTHRIG 415
Query: 287 RTGRAYNTG 295
RTGRA TG
Sbjct: 416 RTGRAGKTG 424
>gi|405945579|gb|EKC17390.1| Putative ATP-dependent RNA helicase DDX56 [Crassostrea gigas]
Length = 446
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 195/329 (59%), Gaps = 27/329 (8%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
M L C +V KV+ ++ +P + L PDI++ATP + G L
Sbjct: 101 MDLTSSCSREV--KVLDISPQVPLPTQKPMLMEKPDIIVATPTRALAHIKAGNL---DLR 155
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
SL++L++DEADLL S+GYEDD++ + + +P+ Q LMSAT S DV LK+++LHN I
Sbjct: 156 QSLELLIIDEADLLFSFGYEDDVRGILSNLPKIYQAFLMSATLSEDVRALKRMVLHNAVI 215
Query: 121 LTLPEVGDVKDEVIPKNVQ--QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
L L E +P+ Q Q+ I C E+DK + L+KL L++ K++IF N ++ +
Sbjct: 216 LKLEE------SQLPEASQLTQYHIKCEEQDKFTLVYALMKLNLLRGKSIIFVNEVNRCY 269
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD-----DTQTKEKDQSD 233
+LKLFLE+F I + +LN+ELP NSR HI+ +FN GL+D +IA+D D +TK
Sbjct: 270 KLKLFLEQFAIPACVLNSELPVNSRCHIVNQFNEGLYDIIIASDENLLMDPKTKP----- 324
Query: 234 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 293
+D K K + K D E+GV RGIDF+NV VINF+ P + Y+HR+GRT R N
Sbjct: 325 ----LDPEKKKDKKRKKKDKEYGVSRGIDFQNVSNVINFDFPCDVDTYIHRVGRTARGDN 380
Query: 294 TGASVSLVSPDEMKIFEEIKSFVGDDENE 322
G+++S VS +M + E++ + + +E
Sbjct: 381 QGSALSFVSVKDMDLLVEVEKTLSESGSE 409
>gi|440300993|gb|ELP93440.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba invadens
IP1]
Length = 534
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/415 (32%), Positives = 219/415 (52%), Gaps = 39/415 (9%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLS-TGVLQSKSFSDSL 63
+L KG + ++ + S + G PDIV ATP + L TG S +L
Sbjct: 104 QLLKGFYGISIINVASDTSMISQKGKTRGLPDIVTATPSSLLTYLKRTGTNLS-----TL 158
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
++V DE DL+++YGYE D+ +S +P C+ L+SAT + DV+ +KKL + N + L
Sbjct: 159 DMVVYDEVDLMIAYGYEKDITQISKTLPETCKKWLLSATINDDVETIKKLTIRNAVKIRL 218
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
+ G+ N+ ++ I C ++DK+L + +L+L +++ K LIF N+I AF +K+F
Sbjct: 219 EDEGE------KGNITEYSIFCEQKDKILNLYIILRLNMIRGKVLIFVNSIQQAFFVKIF 272
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKS 243
L++F I S +LN++ P++ R I+ +FN F LIATD+ T EK ++ +D+ +
Sbjct: 273 LDRFSIPSVVLNSDFPRDIRTDIINQFNNKQFKILIATDEV-TIEKVIEEKAKDLDAEEG 331
Query: 244 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
K++ F V RGIDF +V TV+NF+ P + Y HRIGRT R G +++ V
Sbjct: 332 KEN--------FSVARGIDFVDVATVMNFDCPVSDVSYTHRIGRTARGIKKGTAITFVDK 383
Query: 304 DEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQ 363
E++ F EIK+ + ++ P L S + R D ++TK + +R +
Sbjct: 384 SELEQFSEIKT----KHTLKTYVVDPVIL------NSFKTRVYDAQNTITKNTCKLARIR 433
Query: 364 DLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQE 418
D + E +N E LK + H L+ +HLRD+PDYLL +E
Sbjct: 434 DFKEEKMNLETLKNSVGSG------VSHTTQLA--AAQNHLRDIPDYLLPKNVRE 480
>gi|25148205|ref|NP_740967.1| Protein C24H12.4, isoform b [Caenorhabditis elegans]
gi|351020853|emb|CCD62829.1| Protein C24H12.4, isoform b [Caenorhabditis elegans]
Length = 567
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 141/434 (32%), Positives = 238/434 (54%), Gaps = 33/434 (7%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V+ TPG K L L+ + + + LV+DEADLLLS+GYE+++ + + +P QC
Sbjct: 149 VVVTTPG---KLLRMCSLRPE-YCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQC 204
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLYIL 155
L+ SAT D+ LKKL + P I GD+ + + Q+ ++C S+ ++ ++
Sbjct: 205 LMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS---DQLTQYQLTCGSDEERFAILV 261
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ KL+L+ ++++F NTID ++L L L FG+KS ILN+ +P NSR H++ +FN G +
Sbjct: 262 AMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSY 321
Query: 216 DYLIAT-----DDTQTKEK--DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+IA+ D ++ KE+ +SDE D +K KK +KLD E GV RGIDF +V
Sbjct: 322 QIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKK--ASKLDKESGVSRGIDFHHVSN 379
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
V+NF+ P+ Y+HR+GRT R +N G ++S P E E+I+ + ++ ++
Sbjct: 380 VVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQEEI--NQQMGRKVLQ 437
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
P+ + +++ R + TK ++++R +++R E++ S L+ F N ++ L
Sbjct: 438 PYEFRIKE-LDTFLLRTREALSKCTKGVIKKARLKEIRQELMRSANLQTFFAKNEREKLL 496
Query: 389 LK---HDKDLSKKPPASHLRDVPDYLLDAKTQE---ACKMVKLARAAMGNKNSSRRQGPR 442
++ H L PA + DV Y++ + + K R MG K+ RQ +
Sbjct: 497 MQTDCHPVMLKINSPA--IADVTSYMVPEALRGMDFSAPGAKNRRYNMGQKH---RQKLK 551
Query: 443 RKFRK--SDPLKSF 454
KF+K DPLK+F
Sbjct: 552 HKFQKKGKDPLKTF 565
>gi|25148203|ref|NP_740966.1| Protein C24H12.4, isoform a [Caenorhabditis elegans]
gi|351020852|emb|CCD62828.1| Protein C24H12.4, isoform a [Caenorhabditis elegans]
Length = 634
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 141/434 (32%), Positives = 238/434 (54%), Gaps = 33/434 (7%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V+ TPG K L L+ + + + LV+DEADLLLS+GYE+++ + + +P QC
Sbjct: 216 VVVTTPG---KLLRMCSLRPE-YCTLVSYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQC 271
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLYIL 155
L+ SAT D+ LKKL + P I GD+ + + Q+ ++C S+ ++ ++
Sbjct: 272 LMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS---DQLTQYQLTCGSDEERFAILV 328
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ KL+L+ ++++F NTID ++L L L FG+KS ILN+ +P NSR H++ +FN G +
Sbjct: 329 AMFKLKLIVGRSILFVNTIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSY 388
Query: 216 DYLIAT-----DDTQTKEK--DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+IA+ D ++ KE+ +SDE D +K KK +KLD E GV RGIDF +V
Sbjct: 389 QIVIASDVSDADGSKLKEEIAGKSDEKPEKDEKKGKK--ASKLDKESGVSRGIDFHHVSN 446
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
V+NF+ P+ Y+HR+GRT R +N G ++S P E E+I+ + ++ ++
Sbjct: 447 VVNFDFPETTDAYIHRVGRTARGFNKGTALSFCIPSERAHLEQIQEEI--NQQMGRKVLQ 504
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
P+ + +++ R + TK ++++R +++R E++ S L+ F N ++ L
Sbjct: 505 PYEFRIKE-LDTFLLRTREALSKCTKGVIKKARLKEIRQELMRSANLQTFFAKNEREKLL 563
Query: 389 LK---HDKDLSKKPPASHLRDVPDYLLDAKTQE---ACKMVKLARAAMGNKNSSRRQGPR 442
++ H L PA + DV Y++ + + K R MG K+ RQ +
Sbjct: 564 MQTDCHPVMLKINSPA--IADVTSYMVPEALRGMDFSAPGAKNRRYNMGQKH---RQKLK 618
Query: 443 RKFRK--SDPLKSF 454
KF+K DPLK+F
Sbjct: 619 HKFQKKGKDPLKTF 632
>gi|146197830|dbj|BAF57628.1| DEAD/H box protein [Dugesia japonica]
Length = 529
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 231/462 (50%), Gaps = 49/462 (10%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L V ++S L+ L PD +I TP + + G++ K LK L++DEAD
Sbjct: 103 LSSVNISSQKKHDILKPILLKRPDYIIGTPSQVLGYVKEGLINIKE----LKFLIIDEAD 158
Query: 73 LLLSYGYEDDLKALSAVI-PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
L+ +GY +D++ LS I Q L++SAT DV L+ + + L L
Sbjct: 159 LMSGFGYREDIEKLSNDINAANSQILMLSATLGEDVKALRHIFKVRWFRLELNN-----S 213
Query: 132 EVIPKNVQ--QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
E++P Q Q C E +K ++ + KL L++ K +IF NT+D +R+++ + F I
Sbjct: 214 EMLPSTEQLTQLVKKCDEEEKFNILVGMFKLNLIKGKTIIFANTVDKCYRMRIVFDTFHI 273
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
S +LNAE+P SR HI+ EFN G +D L+A SDE +D+ + K K
Sbjct: 274 SSVVLNAEMPVASRNHIVHEFNVGRYDLLLA-----------SDEDNLIDNAE-KDFTKK 321
Query: 250 KL--DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
KL D EF + RGIDF V VIN + P YVHR+GR R G +V VS +
Sbjct: 322 KLNKDEEFKISRGIDFNQVSNVINMDCPSTVESYVHRVGRAARVNQKGQAVLFVSIKDND 381
Query: 308 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 367
F I + + D N S + PF ++N E YR + T+ ++R++R D+
Sbjct: 382 KFTAIDNMLMKDNNGVS-VFKPFK-CSRNIYEGFVYRITEALSKCTRASIRQARLLDIHK 439
Query: 368 EILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLAR 427
EI NS L+A+F+ NP ++ +L+H+K + K+ H+++VP YL+ QE K
Sbjct: 440 EIENSHALQAYFQENPTEMKVLQHNKPVIKE-RNQHMKNVPSYLIPPILQEKLK------ 492
Query: 428 AAMGNKNSSRRQGPR---------RKFRKSDPLKSFSAEPTK 460
KNS +R+ R K + S+PL SF + K
Sbjct: 493 -----KNSKKRRRTRFKEGTKPSINKKKSSNPLFSFKKKAKK 529
>gi|170578156|ref|XP_001894291.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158599187|gb|EDP36872.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 599
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/386 (34%), Positives = 215/386 (55%), Gaps = 43/386 (11%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
PD V++TPG + L + +S+K +VLDEADLLLS+GY ++++ + P
Sbjct: 200 PDFVVSTPGRLLHALK----KYGKPCESVKHVVLDEADLLLSFGYAEEMRLIKNFFPAHH 255
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLY 153
Q + SAT + +V+ LK+L + P +L + G + K + Q+ ISC +E ++
Sbjct: 256 QTIFTSATMTENVEALKELYVTGPIVLMKLKEGQLPSS---KQLSQYHISCQNEEERFAI 312
Query: 154 ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
L LLKL+L+ K++IF D ++L LFL+ F I+S ILNA++P NSR H++E+FN G
Sbjct: 313 FLALLKLKLIVGKSIIFVRDTDRCYQLGLFLQAFNIRSCILNAQMPMNSRCHVVEQFNEG 372
Query: 214 LFDYLIATD------DTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+ Y+IA+D ++Q KD+ DE + KK + +D E G+ RGIDF +V
Sbjct: 373 RYSYVIASDINDVSGESQAVMKDEDDEDISKKKKMQKKK-RKHIDKESGISRGIDFHHVA 431
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 327
VINF+ P + Y+HR+G + N ++P E++I +E++SFV
Sbjct: 432 NVINFDFPTSLNSYIHRVGSSKEEINAQLGHRAITPYEVRI-KELESFV----------- 479
Query: 328 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 387
R +V + TK A+RE+R ++R EIL S++L+A+F NP++
Sbjct: 480 ---------------LRTREVLAACTKTAIREARLAEIRAEILRSKRLEAYFAKNPRERA 524
Query: 388 LLKHDKDL-SKKPPASHLRDVPDYLL 412
L+HDK L S + + DVPDY++
Sbjct: 525 ALEHDKKLFSVNLHSPAIGDVPDYMV 550
>gi|323455805|gb|EGB11673.1| hypothetical protein AURANDRAFT_52462 [Aureococcus anophagefferens]
Length = 761
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 166/500 (33%), Positives = 252/500 (50%), Gaps = 61/500 (12%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD- 61
L C+ V +V L A D +G D+V TP + V ++++ D
Sbjct: 215 LAAYCRDDVA--IVALRGESAAEDAAQVRSGNADVVAGTPAAV----RDAVERARAHDDH 268
Query: 62 -------SLKILVLDEADLLLSYGYEDDLKALS-------------AVIPRGCQCLLMSA 101
+ + +DEADL+LS+GY++D+ ++ A P+G L+SA
Sbjct: 269 PLLRLRRTCRAYAVDEADLVLSFGYDEDVAFVARELGVAGDDAADRADRPQG---FLLSA 325
Query: 102 TSSSDVDKLKKLILHNPYILTLPEV-----GDVKDEVIPKNVQQFWISCSERDKLLYILT 156
T DV KLKKL L + L E GD DE + Q+++ ++ DK L
Sbjct: 326 TLGDDVLKLKKLALKGAATVKLDERAGVFGGDRDDEA---QLAQYYVPVAKGDKYLVTYV 382
Query: 157 LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+LKL L++ + ++F N++D ++LKLFL+ F I+ +LNAELP SRLH +E +N GL+D
Sbjct: 383 MLKLALLEGRGVLFVNSVDACYKLKLFLDLFSIRCLVLNAELPLASRLHAIESYNRGLYD 442
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
L+ATD + E + E +K+ K PK D+ FGV RGIDF++V V+N ++P
Sbjct: 443 ILVATD--ASVEATDAPEKRKRGQKKATKAPKKSKDA-FGVARGIDFRDVKWVLNVDVPA 499
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-----EIKSFVGDDENEDSNIIAPFP 331
Y HR+GRT RA G ++SLV P ++ + + + DE A P
Sbjct: 500 TPESYTHRVGRTARAGARGTALSLVPPMKLASLAAGGACAVLAALDVDEAAALGAGAHVP 559
Query: 332 LLAQ-----NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 386
A+ A E RYR DV + VT +VR++RA +LR E+L+SE LKAHF NP DL
Sbjct: 560 QPARLAFDGGACEPFRYRVSDVQRGVTAASVRDARAAELRKEMLDSEALKAHFSDNPDDL 619
Query: 387 DLLKHDK---DLSKKPPASHLRDVPDYLL-------DAKTQEACKMVKLARAAMGNKNSS 436
+L+ K + + A+ ++ VP YL+ AK +++ K K + G K
Sbjct: 620 AVLQQTKAEHHVRRDLLAATIKTVPSYLVPKALAAAGAKPKQSFKRKKRSEKRSGAKRQR 679
Query: 437 RRQGPRRKFRKSDPLKSFSA 456
+ +DPL+SF A
Sbjct: 680 GDGADETRRTDNDPLQSFDA 699
>gi|172087520|ref|XP_001913302.1| ATP-dependent 61 kDa nucleolar RNA helicase-like protein
[Oikopleura dioica]
gi|42601431|gb|AAS21454.1| ATP-dependent 61 kDa nucleolar RNA helicase-like protein
[Oikopleura dioica]
gi|313228721|emb|CBY17872.1| unnamed protein product [Oikopleura dioica]
Length = 548
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 157/436 (36%), Positives = 238/436 (54%), Gaps = 40/436 (9%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
IVI TPG + L + L S ++ L ++VLDEADLL +G + + + + +P Q
Sbjct: 128 IVIGTPGRILNALKSERL---SLTE-LSVMVLDEADLLFGFGNDKMVTEIVSHLPGTQQS 183
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP--KNVQQFWISCSER-DKLLY 153
LMSAT S V+K+KKL L NP L L D +P + +QQ+ I+ +E +K L
Sbjct: 184 FLMSATLSEQVEKIKKLTLRNPVTLKLD------DSSLPNAETLQQYQINLNEDFEKYLV 237
Query: 154 ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
IL+ LKL +V+ K+L+F + ++LKLFL++FGI S +L++EL SR + +++FN G
Sbjct: 238 ILSFLKLRIVRGKSLVFACGTNRCYKLKLFLKQFGIPSVVLSSELAAASRHNAVQQFNKG 297
Query: 214 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS-------EFGVVRGIDFKNV 266
FD +IA D E + +EG H ++K +K K K EFGV RGIDF+NV
Sbjct: 298 KFDVMIANDQVDLDE--EIEEGEHTKAKKEEKDSKKKKSKTQEEDHREFGVSRGIDFQNV 355
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL-VSPDEMKIFEEIKSFVGDDENEDSN 325
VINF+ P +A Y+HR GRT R N G ++L + +E +++ G
Sbjct: 356 SNVINFDFPTSAKQYIHRAGRTARGDNKGRVINLMIGQEERDCLDKVTEVTGIS------ 409
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK-AHFEVNPK 384
+ F + VE LR RA D +K A+R+ R +++ ILNS+KL+ +F +
Sbjct: 410 -VDRFKFKMEQ-VEGLRGRASDALDKCSKRAIRDGRVAEIKQAILNSKKLQEEYFTRHEN 467
Query: 385 DLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKN-------SSR 437
DL L+HD +L K S L ++P YLL A+ + + ++ AR KN +
Sbjct: 468 DLMALRHDANLKKVSKRSDLANIPTYLLPAQIKNSLN-IENARLKPQTKNYHKKGLSTKE 526
Query: 438 RQGPRRKFRKSDPLKS 453
+Q +K R +DPLK+
Sbjct: 527 KQALLKKRRANDPLKT 542
>gi|341896819|gb|EGT52754.1| hypothetical protein CAEBREN_22546 [Caenorhabditis brenneri]
Length = 637
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 238/441 (53%), Gaps = 42/441 (9%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V+ TPG K L L+ + + + LV+DEADLLLS+GYE+++ + + +P QC
Sbjct: 214 VVVTTPG---KLLRMCTLRPE-YCSLVNYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQC 269
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLYIL 155
++ SAT D+ LKKL + P I GD+ + + Q+ ++C S+ ++ ++
Sbjct: 270 VMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS---DQLTQYQLTCASDEERFAILV 326
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ KL+L+ ++++F N+ID ++L L L FG+KS ILN+ +P NSR H++ +FN G +
Sbjct: 327 AMFKLKLIVGRSILFVNSIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSY 386
Query: 216 DYLIATD-----DTQTKEK------DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
+IA+D ++ KE+ D +EGG ++ K KLD E GV RGIDF
Sbjct: 387 QIVIASDVSDADGSKLKEQLAAVPEDTPEEGGKTAKKEKKAG-GKKLDKESGVSRGIDFH 445
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 324
+V V+NF+ P+ Y+HR+GRT R +N G ++S +P E + I+ + ++
Sbjct: 446 HVSNVVNFDFPETTDAYIHRVGRTARGFNKGTALSFCTPQERPYLDTIQEEI--NQQMGR 503
Query: 325 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 384
++ P+ + +++ R + TK ++++R +++R E++ S L+ F N +
Sbjct: 504 KVLQPYEFRIKE-LDTFLLRTREALAKCTKGVIKKARLKEIRQELMRSANLQTFFAKNER 562
Query: 385 DLDLLK---HDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKN------S 435
+ L++ H L PA + DV Y++ EA + + +A GNKN
Sbjct: 563 EKLLMQTDCHPVMLKINSPA--IADVTSYMVP----EALRGMDF--SAPGNKNRRYNMGQ 614
Query: 436 SRRQGPRRKFRK--SDPLKSF 454
RQ + KF+K DPLK+F
Sbjct: 615 KHRQKLKHKFQKKGKDPLKTF 635
>gi|67470935|ref|XP_651424.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56468157|gb|EAL46038.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708575|gb|EMD48009.1| ATP-dependent RNA helicase dbp9, putative [Entamoeba histolytica
KU27]
Length = 551
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 234/424 (55%), Gaps = 51/424 (12%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
+L KG + V+ + + + + PDI+ ATP + + L ++ + D ++
Sbjct: 106 QLLKGYFGISVLNVANENGVISQKGKMKSIPDIITATPATLLQYLK----KTGNNLDGVE 161
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
I V DE DL+++YGYE+D+K L+ IP+ L+SAT + D++ LK L+L + + +
Sbjct: 162 ISVYDEVDLMIAYGYENDIKELNKKIPKESVKWLLSATINDDIETLKHLMLKSAVKIRIE 221
Query: 125 EVGDVKDEVIPKNVQQFWISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
E ++V +V+++ I+C + DK L + LLKL ++ K LIF N+I F +KLF
Sbjct: 222 E-----EQV---SVEEYIINCERKEDKALNLYVLLKLNMIHGKVLIFVNSIQKCFYVKLF 273
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-----------QTKEKDQS 232
L+ F I S +LN++LP++ R++I+E+FN F+ LIATD+T + K+K+
Sbjct: 274 LDLFSIPSVVLNSDLPRDIRMNIIEQFNNKEFNILIATDETTIQKIIPKKLQEVKDKNNM 333
Query: 233 DEGGHVDSRKSKKHPKAKLDS---EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
+E G H ++ DS + V RGIDF++V VINF+ P + Y HRIGRTG
Sbjct: 334 EEVG------DHSHIISEGDSAQENYSVSRGIDFQDVACVINFDCPISIVSYTHRIGRTG 387
Query: 290 RAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 349
RA G +++ V ++ IK D E +D II P + V + + R D+
Sbjct: 388 RASKKGTAITFVLNEDKDYITSIKK---DHEIKDF-IIEP------SVVGAFKTRVYDMQ 437
Query: 350 KSVTKIAVRESRAQDLRNEILNSEKLKAHF-EVNPKDLDLLKHDKDLSKKPPASHLRDVP 408
++VTK A ++R +D + E+ N E+LK ++N +KH L + A HL+D+P
Sbjct: 438 RNVTKNACNDARIKDYKKEVGNVEELKKSVGKLN------IKHTAALVDQ-RAQHLKDIP 490
Query: 409 DYLL 412
DYLL
Sbjct: 491 DYLL 494
>gi|452820880|gb|EME27917.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 525
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 139/419 (33%), Positives = 224/419 (53%), Gaps = 27/419 (6%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A +L ++ + L P+S + AL I++ TP + L G K+
Sbjct: 111 ATFQLLNRYNSIRTLALLQKQPSSWQKVALT---HILVTTPATLLHLLQQGTYSIKN--- 164
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
LK LV+DEADLL S+GYE D++ + IP Q + +SAT + + + +
Sbjct: 165 -LKWLVVDEADLLFSFGYEQDMQKILPSIPAKVQSVFVSATLDKETYHFLRHFEDKRHAM 223
Query: 122 TLPEV-GDV-KDEVIPKNVQQFWISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
+ DV ++E + + ++ E+DK L + L+KL++++ K LIF N++D F
Sbjct: 224 QQIRIKHDVTQEERLQVLAKHHYVQVEKEQDKYLVVFALIKLQVLKGKILIFVNSVDKGF 283
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT----QTKEKDQSDE 234
RLKL L++F I +++LNAELP SRLH +E+FN G LIATD+ Q +
Sbjct: 284 RLKLLLDQFYIHTSLLNAELPLLSRLHSVEQFNQGKSSILIATDEACIWNQKMKSSWKAN 343
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
+D K+K+ ++EF + RG+DF+ V V+N + P + Y+HR GRT RA
Sbjct: 344 ANTLDKEKTKEQ-----ENEFDLSRGMDFQQVAVVLNLDCPYSLISYIHRAGRTARAGKA 398
Query: 295 GASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPL-LAQNAVESLRYRAEDVAKSVT 353
G ++LV+ +EM + +G + + + PL + + VE RYR ED +T
Sbjct: 399 GDILTLVTSEEMPRLQNHFEGMGLKQEQWN------PLKVKMSQVEPFRYRVEDCLYKIT 452
Query: 354 KIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
K ++E+RA ++R E+LNSEK+K +F + D + LK D+ L+ + HL D+P YL+
Sbjct: 453 KNVLKEARATEIRREMLNSEKMKEYFAHHALDFEALKSDRPLNTR-TNPHLADIPSYLM 510
>gi|308456622|ref|XP_003090738.1| hypothetical protein CRE_04391 [Caenorhabditis remanei]
gi|308260774|gb|EFP04727.1| hypothetical protein CRE_04391 [Caenorhabditis remanei]
Length = 633
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 139/435 (31%), Positives = 237/435 (54%), Gaps = 35/435 (8%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+VI+TPG + + S + ++ LV+DEADLLLS+GYE+++ + + +P QC
Sbjct: 217 VVISTPGKLLRMCSI----RPEYCSLVQYLVMDEADLLLSFGYEEEMIKIRSKLPSTYQC 272
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLYIL 155
++ SAT D+ LKKL + P I GD+ + + Q+ ++C S+ ++ ++
Sbjct: 273 VMTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS---DQLTQYQLTCGSDEERFAILV 329
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ KL+L+ ++++F N+ID ++L L L FG+KS ILN+ +P NSR H++ +FN G +
Sbjct: 330 AMYKLKLIVGRSILFVNSIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGAY 389
Query: 216 DYLIATDDTQ---TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
+IA+D + +K KD EG +KSKK KLD E GV RGIDF +V V+NF
Sbjct: 390 QIVIASDVSDADGSKLKDLEPEGTEQKEKKSKKSGSKKLDKESGVSRGIDFHHVSNVVNF 449
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPL 332
+ P+ Y+HR+GRT R +N G ++S +P E E I+ + + ++ P+
Sbjct: 450 DFPETTDAYIHRVGRTARGFNKGTALSFCTPQERPHLETIQDEI--NAQMGRKVLQPYEF 507
Query: 333 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK-- 390
+ +++ R + TK ++++R +++R E++ S L+ F N ++ L++
Sbjct: 508 RIKE-LDTFLLRTREALAKCTKGVIKKARLKEIRQEMMRSANLQTFFAKNEREKLLMQTD 566
Query: 391 -HDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLA-------RAAMGNKNSSRRQGPR 442
H L PA + DV Y++ EA + + + R MG K+ RQ +
Sbjct: 567 CHPVMLKINSPA--IADVTPYMVP----EALRGMDFSAPGNKHRRYNMGQKH---RQKLK 617
Query: 443 RKFRK--SDPLKSFS 455
KF+K DPLK+F+
Sbjct: 618 HKFQKKGKDPLKTFT 632
>gi|294898598|ref|XP_002776294.1| ATP-dependent RNA helicase DBP9, putative [Perkinsus marinus ATCC
50983]
gi|239883204|gb|EER08110.1| ATP-dependent RNA helicase DBP9, putative [Perkinsus marinus ATCC
50983]
Length = 631
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 162/451 (35%), Positives = 244/451 (54%), Gaps = 57/451 (12%)
Query: 35 PDIVIATPGCMPKCLSTGVLQS-KSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
P I++ TP CLS VL+S K ++K LV+DEADL+LSYGYE+D+K + + R
Sbjct: 156 PSILVCTPAA---CLS--VLKSRKELGPTIKHLVIDEADLMLSYGYEEDIKGVLGYLDR- 209
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEV--GDVKDEVIPKNVQQFWISCSERDKL 151
QC+L+SAT + DV+ LK L LH P I+ L E G E +++QF++ +K
Sbjct: 210 YQCMLLSATLNDDVETLKGLCLHKPVIVKLEEAESGAAAGE---GHLKQFYLPLRPDEKY 266
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS-AILNAELPQNSRLHILEEF 210
L + LLKL+L+ K LIF ID A+R KL L+KF + S A+LN ELP SR I+E F
Sbjct: 267 LVVYGLLKLKLLVGKTLIFAKDIDSAYRYKLLLDKFSMGSVAVLNYELPFLSRNQIIESF 326
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
N D LIAT+ Q+ G + E + RG+DF +V V+
Sbjct: 327 NMNAIDVLIATN--------QAVSGSGAE--------------EQAIHRGLDFVDVKAVL 364
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI-IAP 329
N +MP A YVHR+GRT R G +++LV D+++ ++E+ + E E++ + I
Sbjct: 365 NADMPDTAREYVHRVGRTARGGANGTALTLV--DDVEQWQEVLA-----EIEEAGVEIEA 417
Query: 330 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLL 389
P L + + SL+YR EDV+ S+TK AV R +L E+L+S+K+K + N +D L
Sbjct: 418 LP-LDISELNSLKYRVEDVSHSITKKAVASLRQSELMREVLHSDKMKQQLQENTEDAKAL 476
Query: 390 K-----HDKDLSKKPPASHLRDVPDYLLDA-------KTQEACKMVKLARAAMGNKNSSR 437
+ ++ ++ L+D+P+YL+ + +A VKLA GN +
Sbjct: 477 RKSLRQNNAKVAGSTIKKSLKDLPEYLVPQSFLNSLDEDGDASNPVKLAALGKGNSTDGK 536
Query: 438 RQGPRRKFRKSDPLKSFSAEPTKRAGKGRMK 468
+ ++ SDPLK+F + KR G M+
Sbjct: 537 KGKGMKRKLSSDPLKTFEST-RKRLLTGSMR 566
>gi|268534132|ref|XP_002632196.1| Hypothetical protein CBG07062 [Caenorhabditis briggsae]
Length = 634
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 142/437 (32%), Positives = 240/437 (54%), Gaps = 38/437 (8%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V+ TPG K L L+ + + + LV+DEADLLLS+GYE+++ + + +P QC
Sbjct: 215 VVVTTPG---KLLRMCGLRPE-YCSIVSYLVMDEADLLLSFGYEEEMIKIRSKLPPTYQC 270
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLYIL 155
+L SAT D+ LKKL + P I GD+ + + Q+ ++C S+ ++ ++
Sbjct: 271 VLTSATLKDDMTTLKKLFMTGPVITIKLTEGDLPNS---DQLTQYQLTCGSDEERFAILV 327
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ KL+L+ ++++F N+ID ++L L L FG+KS ILN+ +P NSR H++ +FN G +
Sbjct: 328 AMFKLKLIVGRSILFVNSIDRCYKLMLILRVFGLKSCILNSAMPANSRCHVINQFNEGSY 387
Query: 216 DYLIATD-----DTQTKE--KDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+IA+D ++ KE KD ++E K +K KLD E GV RGIDF +V
Sbjct: 388 QIVIASDVFDADGSKLKEELKDATEESTEGKKDKKEKKGGKKLDKESGVSRGIDFHHVSN 447
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
V+NF+ P+ Y+HR+GRT R +N G ++S +P E + E I+ + ++ ++
Sbjct: 448 VVNFDFPETTDAYIHRVGRTARGFNKGTALSFCTPQERQHLETIQEEI--NQQMGRKVLQ 505
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
P+ + +++ R + A S TK ++++R +++R E++ S L+ F N ++ L
Sbjct: 506 PYEFRIKE-LDTFLLRTRE-ALSKTKGVIKKARLKEIRQELMRSANLQTFFAKNEREKLL 563
Query: 389 LK---HDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKN------SSRRQ 439
++ H L PA + DV Y++ EA + + +A GNKN RQ
Sbjct: 564 MQTDCHPVMLKINSPA--IADVTSYMVP----EALRGMDF--SAPGNKNRRYNMGQKHRQ 615
Query: 440 GPRRKFRK--SDPLKSF 454
+ KF+K DPLK+F
Sbjct: 616 KLKHKFQKKGKDPLKTF 632
>gi|167382435|ref|XP_001736101.1| ATP-dependent RNA helicase dbp9 [Entamoeba dispar SAW760]
gi|165901540|gb|EDR27618.1| ATP-dependent RNA helicase dbp9, putative [Entamoeba dispar SAW760]
Length = 552
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 156/469 (33%), Positives = 248/469 (52%), Gaps = 56/469 (11%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
+L KG + V+ + + + + PDI+ ATP + + L ++ + D ++
Sbjct: 106 QLLKGYFGISVLNVANENGVISQKGKMKSIPDIITATPATLLQYLK----KTGNNLDGVE 161
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
I V DE DL+++YGYE+D+K L+ IP+ L+SAT + D++ LK L+L + + +
Sbjct: 162 ISVYDEVDLMIAYGYENDIKELNKKIPKESVKWLLSATINDDIETLKHLMLKSAVKIRIE 221
Query: 125 EVGDVKDEVIPKNVQQFWISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
E V V+++ I+C + DK L + LLKL ++ K LIF N+I F +KLF
Sbjct: 222 EEEQVS-------VEEYIINCERKEDKALNLYVLLKLNMIHGKVLIFVNSIQKCFYVKLF 274
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-----------QTKEKDQS 232
L+ F I S +LN++LP+ R++I+E+FN F+ LIATD+T + K+K+
Sbjct: 275 LDLFSIPSVVLNSDLPREIRMNIIEQFNNKEFNILIATDETTIQKVIPKKLQEVKDKNIM 334
Query: 233 DEGGHVDSRKSKKHPKAKLDS---EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
+E G H ++ DS + V RGIDF++V VINF+ P + Y HRIGRTG
Sbjct: 335 EEDG------DHSHIISEGDSAQENYSVSRGIDFQDVACVINFDCPISIVSYTHRIGRTG 388
Query: 290 RAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 349
RA G +++ V ++ IK D E +D II P + V + + R D+
Sbjct: 389 RASKKGTAITFVLNEDKDYITSIKK---DHEIKDF-IIEP------SVVGAFKTRVYDMQ 438
Query: 350 KSVTKIAVRESRAQDLRNEILNSEKLKAHF-EVNPKDLDLLKHDKDLSKKPPASHLRDVP 408
++VTK A ++R +D + E+ N E+LK ++N +KH L + A HL+D+P
Sbjct: 439 RNVTKNACNDARIKDYKKEVGNVEELKKSVGKLN------IKHTAALVDQ-RAQHLKDIP 491
Query: 409 DYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPR----RKFRKSDPLKS 453
DYLL + K V L R ++R P+ +K R+S P KS
Sbjct: 492 DYLLPDNVVQRLKGV-LDRTNEYEAKETKR-NPKSKSSKKRRESKPRKS 538
>gi|407038398|gb|EKE39109.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 552
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 231/424 (54%), Gaps = 50/424 (11%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
+L KG + V+ + + + + PDI+ ATP + + L ++ + D ++
Sbjct: 106 QLLKGYFGISVLNVANENGVISQKGKMKSIPDIITATPATLLQYLK----KTGNNLDGVE 161
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
I V DE DL+++YGYE+D+K L+ IP+ L+SAT + D++ LK L+L + + +
Sbjct: 162 ISVYDEVDLMIAYGYENDIKELNKKIPKESVKWLLSATINDDIETLKHLMLKSAVKIRIE 221
Query: 125 EVGDVKDEVIPKNVQQFWISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
E V V+++ I+C + DK L + LLKL ++ K LIF N+I F +KLF
Sbjct: 222 EEEQVS-------VEEYIINCERKEDKALNLYVLLKLNMIHGKVLIFVNSIQKCFYVKLF 274
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-----------QTKEKDQS 232
L+ F I S +LN++LP++ R++I+E+FN F+ LIATD+T + K+K+
Sbjct: 275 LDLFSIPSVVLNSDLPRDIRMNIIEQFNNKEFNILIATDETTIQKIIPKKLQEVKDKNNM 334
Query: 233 DEGGHVDSRKSKKHPKAKLDS---EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
+E G H ++ DS + V RGIDF++V VINF+ P + Y HRIGRTG
Sbjct: 335 EEVG------DHSHIISEGDSAQENYSVSRGIDFQDVACVINFDCPISIVSYTHRIGRTG 388
Query: 290 RAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 349
RA G +++ V ++ IK D E +D II P + V + + R D+
Sbjct: 389 RASKKGTAITFVLNEDKDYITSIKK---DHEIKDF-IIEP------SVVGAFKTRVYDMQ 438
Query: 350 KSVTKIAVRESRAQDLRNEILNSEKLKAHF-EVNPKDLDLLKHDKDLSKKPPASHLRDVP 408
++VTK A ++R +D + E+ N E+LK ++N +KH L + A HL+D+P
Sbjct: 439 RNVTKNACNDARIKDYKKEVGNVEELKKSVGKLN------IKHTAALVDQ-RAQHLKDIP 491
Query: 409 DYLL 412
DYLL
Sbjct: 492 DYLL 495
>gi|345316817|ref|XP_001516951.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like
[Ornithorhynchus anatinus]
Length = 353
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 122/281 (43%), Positives = 170/281 (60%), Gaps = 22/281 (7%)
Query: 38 VIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCL 97
V+ TP + L G L DSL++LV+DEADLL S+G+E++LK+L +PR Q
Sbjct: 27 VVGTPSRVHSHLQQGGL---VLRDSLELLVMDEADLLFSFGFEEELKSLLCHLPRIYQAF 83
Query: 98 LMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKLLYILT 156
LMSAT + DV LK+L+LHNP L L E P+ +QQF + C +E DK L +
Sbjct: 84 LMSATFNEDVQALKELVLHNPVTLKLQE----SQLPGPERLQQFQVLCEAEEDKFLLLYA 139
Query: 157 LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
LLKL L++ K+L+F NT++ ++RL+LFLE+F I + +LN ELP SR HI+ +FN G +D
Sbjct: 140 LLKLRLLRGKSLLFVNTVERSYRLRLFLEQFSIPACVLNGELPLRSRCHIISQFNQGFYD 199
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
+IATD +E+ +RK +K D E GV RGIDF NV V+NF++P
Sbjct: 200 CIIATDGVIRRER----------ARKGEK----ASDPEAGVARGIDFHNVAAVLNFDLPP 245
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+ YVHR GRT RA N G +++ V P E I+ +G
Sbjct: 246 SPEAYVHRAGRTARADNPGTTLTFVLPAERPQLARIEETLG 286
>gi|449017498|dbj|BAM80900.1| similar to RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 552
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 234/450 (52%), Gaps = 63/450 (14%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE-DDLKALSAVIPRGCQ 95
+ + TP + + L+T + ++ +LV+DEADL+LS+ + + IP Q
Sbjct: 138 VCVGTPAGLAQSLTT------ERARNVVLLVIDEADLVLSFASSATQVHDVVRKIPTNAQ 191
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS----CSERDKL 151
+L+SAT +V+ L+ L LH P + D NVQ +W+S ER
Sbjct: 192 GVLLSATLDEEVEALRALALHQPEACRIEASWDADPSGNKSNVQ-YWVSRLSGLDERFAW 250
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
LY++ L+L +++ + L+F +++ A+R+KLFL++FGI+ A+LNA+LP SR H L++F+
Sbjct: 251 LYVV--LRLRILRDRILVFVDSVLEAYRVKLFLDRFGIRCAVLNADLPVTSRQHCLQQFD 308
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
AG+FD L+ +D+ T + + + RG+DF++V VI+
Sbjct: 309 AGIFDILVTSDEATTLKS-----------------------TGYSASRGLDFRSVDVVIH 345
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
F P+N ++HR GRTGRA G V+LV+ D+ + I+ F E+ ++
Sbjct: 346 FTAPKNIEVFLHRSGRTGRAGRAGKVVTLVTNDDES--QRIERFF--TEHARLSMQGQPR 401
Query: 332 LLA--QNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK----AHFEVNPKD 385
LLA + +E+ RYR ED + T +AVRE+R Q LR+E+L S + A + + D
Sbjct: 402 LLAVRKETMETFRYRVEDALCACTDLAVREARVQALRDEMLRSRAFRDALLAARQGDRVD 461
Query: 386 LDLLKHDKDLSKKPPASHLRDVPDYLLD------------AKTQEACKMVKLARAAMGNK 433
L++L HD+ L +K A+HL +PDY+L A Q A ++ A NK
Sbjct: 462 LEVLSHDRPLVRKRLAAHLGHIPDYMLKDDGLWQVLAPEMANAQSATDDLRPAGPEELNK 521
Query: 434 NSSRRQGPRRKFR--KSDPLKSFSAEPTKR 461
+R +R R +S P K AEP KR
Sbjct: 522 PVEKRPKRKRIARNFRSGPRK--RAEPLKR 549
>gi|281207672|gb|EFA81852.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 729
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 149/222 (67%), Gaps = 10/222 (4%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
+++C QL VVQL S+ + L PDI+I+TP + L +G +Q +S S
Sbjct: 115 FLQIC-FYTQLSVVQLAGDQSESEQKGLLRDIPDIIISTPTRLVNHLKSGSIQLES---S 170
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
L++LV+DEADL+LSYGY++D+ + + +P+ CQ LMSAT ++ V++LKKLILH P IL
Sbjct: 171 LEMLVIDEADLVLSYGYQEDINTIKSYLPKVCQGFLMSATLTAQVEELKKLILHTPAILR 230
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
L +D V N+ ++ I CS DK L + +LL+L+L+Q K L F N ++LKL
Sbjct: 231 L------EDTVEKSNLSEYSIRCSNFDKFLLVFSLLRLKLMQGKILFFVNDTSSCYKLKL 284
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 224
FLE+F IK+A+LN+ELP NSR HI+ +FN G+FDYLIATD++
Sbjct: 285 FLERFHIKAAVLNSELPINSRHHIILQFNKGIFDYLIATDES 326
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/192 (45%), Positives = 116/192 (60%), Gaps = 11/192 (5%)
Query: 227 KEKDQSDEGGHVDSR-----KSKKHPKAKL-DSEFGVVRGIDFKNVHTVINFEMPQNAAG 280
+EK DE DS K K K KL D+E+GV RGIDF+NV V+NF+ P+
Sbjct: 444 EEKTSDDEKEMEDSFFSSTPKVKTEKKTKLTDTEYGVSRGIDFRNVDIVVNFDFPRTVKN 503
Query: 281 YVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVES 340
YVHRIGRT R N G ++S ++PD + E++ G E + PF NA+E
Sbjct: 504 YVHRIGRTARGSNKGIALSFITPDNDDLLHEVQKKRG----ETGYNLKPFEF-KMNAIEG 558
Query: 341 LRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPP 400
RYR EDV +V+K + +R +++ EI+N+EKLK+HFE NPKDL+ LKHD L KK
Sbjct: 559 FRYRVEDVLNTVSKNEISAARKKEIELEIINNEKLKSHFEANPKDLEALKHDVPLLKKKI 618
Query: 401 ASHLRDVPDYLL 412
A +LR +PDYLL
Sbjct: 619 ARNLRIIPDYLL 630
>gi|119581497|gb|EAW61093.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, isoform CRA_a [Homo
sapiens]
Length = 375
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 166/278 (59%), Gaps = 18/278 (6%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
++V ++++ + RA L PD+V+ TP + LS S DSL++LV+DEAD
Sbjct: 113 VRVANVSAAEDSVSQRAVLMEKPDVVVGTPS---RILSHLQQDSLKLRDSLELLVVDEAD 169
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
LL S+G+E++LK+L +PR Q LMSAT + DV LK+LILHNP L L E
Sbjct: 170 LLFSFGFEEELKSLLCHLPRIYQAFLMSATFNEDVQALKELILHNPVTLKLQE----SQL 225
Query: 133 VIPKNVQQFWISC-SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
P +QQF + C +E DK L + LLKL L++ K+L+F NT++ ++RL+LFLE+F I +
Sbjct: 226 PGPDQLQQFQVVCETEEDKFLLLYALLKLSLIRGKSLLFVNTLERSYRLRLFLEQFSIPT 285
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA-- 249
+LN ELP SR HI+ +FN G +D +IATD G V ++ + PK
Sbjct: 286 CVLNGELPLRSRCHIISQFNQGFYDCVIATDAEVL--------GAPVKGKRRGRGPKGDK 337
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGR 287
D E GV RGIDF +V V+NF++P Y+HR GR
Sbjct: 338 ASDPEAGVARGIDFHHVSAVLNFDLPPTPEAYIHRAGR 375
>gi|66359422|ref|XP_626889.1| Dbp9p, eIF4A-1-family RNA SFII helicase, DEXDc+HELICc
[Cryptosporidium parvum Iowa II]
gi|46228356|gb|EAK89255.1| Dbp9p, eIF4A-1-family RNA SFII helicase, DEXDc+HELICc
[Cryptosporidium parvum Iowa II]
Length = 664
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/403 (31%), Positives = 217/403 (53%), Gaps = 51/403 (12%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP---- 91
+I+I+TPG + + G+ +S ++ LV+DEADLL ++GY+ D+ + ++P
Sbjct: 147 NILISTPGDI--LCAKGMGSKESIFQNIAHLVIDEADLLFAFGYDKDMSKVLDLLPNSQD 204
Query: 92 RGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEV---------GDVKDEVIPKNVQQF 141
R QC+L+SAT + +VD LKK++LH P + + PE+ D K + + +
Sbjct: 205 RKYQCILLSATLNKEVDSLKKMVLHRPIFVDIKPEIKEDYFDQEGNDSKCQTSGLLSEYY 264
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
I S DK L + LLK+ ++ +K LIF + +D A+ +KLFLE+FG+ +L +P
Sbjct: 265 TICDSMVDKWLMLYILLKMNVIPRKCLIFVSEVDTAYSIKLFLERFGMSCGVLTPIIPAA 324
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+R +++ FN G +D L+ +D EKD+S + L RG+
Sbjct: 325 TRRMLIQCFNQGSYDILVTSD--TINEKDES--------------VLSILKDNSITYRGV 368
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS---PDEMKIFEEIKSFVGD 318
D+K V +V NF+ P + Y+H IGRT R ++G S+++V+ P+EM++ +E+ +
Sbjct: 369 DYKEVASVFNFDCPSSVRSYIHHIGRTARGGSSGVSITIVNSNIPNEMEVLDELL----N 424
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL--K 376
D N N + + V RYR ED + +TK ++ + Q+++ ILN+ +L
Sbjct: 425 DSNRKMNKLK----ITSEEVACFRYRIEDCMRILTKGNIQRHKLQEIQGLILNNTRLLKS 480
Query: 377 AHFEVNPKDLDLLK-HDKDLSKKPPAS-----HLRDVPDYLLD 413
+F +P D ++LK + K ++ S H++++PDYL D
Sbjct: 481 GYFSKHPGDKNVLKSYHKHITNALNISNSGREHIKNIPDYLYD 523
>gi|66813958|ref|XP_641158.1| hypothetical protein DDB_G0280407 [Dictyostelium discoideum AX4]
gi|74997096|sp|Q54VF1.1|DDX56_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx56; AltName:
Full=DEAD box protein 56
gi|60469187|gb|EAL67182.1| hypothetical protein DDB_G0280407 [Dictyostelium discoideum AX4]
Length = 685
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 148/225 (65%), Gaps = 8/225 (3%)
Query: 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 69
Q + VVQL + + + L PD++++TP + + L +Q +S +L ILV+D
Sbjct: 124 QQLVSVVQLGNDKTLDEQKGLLRDIPDVIVSTPTRLVQHLENKTIQLQS---TLDILVID 180
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EADL+L+YG+++D+ + + +P+ CQC LMSAT + +V++LKKL+LH P +L L E
Sbjct: 181 EADLVLNYGHQNDINIIKSFLPKVCQCFLMSATLTKEVEELKKLVLHTPAVLKLEE---- 236
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
D+ I N+ ++ I C+E DK L + +LL+L L+Q K L F N + ++LKLF E+F I
Sbjct: 237 -DKAIQTNLSEYSIKCAEVDKFLLVFSLLRLRLMQGKILFFVNDTNNCYKLKLFFERFHI 295
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 234
K A+LN+ELP NSR I+ +FN GLFDYLIATD++ + ++ +E
Sbjct: 296 KCAVLNSELPINSRHDIILQFNKGLFDYLIATDESFKSDSNKKEE 340
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 5/164 (3%)
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
+K D E+GV RGIDF+NV V+NF+ P+ Y+HRIGRT R N G ++S V+ ++
Sbjct: 419 SKGDKEYGVARGIDFRNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTYHNEEL 478
Query: 309 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
+++ GD + PF NA+E RYR EDV +++ A++E++ +L+ E
Sbjct: 479 LKKVSKTRGDAGYN----LKPFEF-KMNAIEGFRYRVEDVLRTIGIRAIKEAKKTELKQE 533
Query: 369 ILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+LN+EKLK+HF NP+DL LKHD L KK HLR VP+YLL
Sbjct: 534 LLNNEKLKSHFSENPQDLLALKHDTTLIKKQVPLHLRVVPEYLL 577
>gi|67623801|ref|XP_668183.1| ENSANGP00000021948 [Cryptosporidium hominis TU502]
gi|54659367|gb|EAL37947.1| ENSANGP00000021948 [Cryptosporidium hominis]
Length = 661
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 216/403 (53%), Gaps = 51/403 (12%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP---- 91
+I+I+TPG + + G+ + ++ LV+DEADLL ++GY+ D+ + ++P
Sbjct: 144 NILISTPGDI--LCAKGMGSKEMIFQNIAHLVIDEADLLFAFGYDKDMSKVLDLLPNSQD 201
Query: 92 RGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEV--GDVKDEVIPKNVQ------QFW 142
R QC+L+SAT + +VD LKK++LH P + + PE+ D E Q +++
Sbjct: 202 RKYQCILLSATLNKEVDSLKKMVLHRPIFVDIKPEIKEDDFNQEGNDSKYQTSGLLSEYY 261
Query: 143 ISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
C DK L + LLK+ ++ +K LIF + +D A+ +KLFLE+FG+ +L +P
Sbjct: 262 TICDNMVDKWLMLYILLKMNVIPRKCLIFVSEVDTAYSIKLFLERFGMSCGVLTPIIPAA 321
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+R +++ FN G +D L+ +D EKD+S + L RG+
Sbjct: 322 TRRMLIQCFNQGSYDILVTSD--TINEKDES--------------VLSILKDNSITYRGV 365
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS---PDEMKIFEEIKSFVGD 318
D+K V +V NF+ P + Y+H IGRT R ++G S+++V+ P+EM++ +E+ +
Sbjct: 366 DYKEVASVFNFDCPSSVRSYIHHIGRTARGGSSGVSITIVNSNIPNEMEVLDELL----N 421
Query: 319 DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL--K 376
D N N + + V RYR ED + +TK ++ + Q+++ ILN+ +L
Sbjct: 422 DSNRKMNKLK----ITSEEVACFRYRIEDCMRILTKGNIQRHKLQEIQGLILNNTRLLKS 477
Query: 377 AHFEVNPKDLDLLK-HDKDLSKKPPAS-----HLRDVPDYLLD 413
+F +P D ++LK + K ++ S H++++PDYL D
Sbjct: 478 GYFSKHPGDKNVLKSYHKHITNALNISNSGREHIKNIPDYLYD 520
>gi|253745305|gb|EET01322.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
Length = 612
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 210/411 (51%), Gaps = 41/411 (9%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P+I+I+TP + + G + K+ V DEADL+ Y DL+AL +P
Sbjct: 132 PEILISTPSLVMNLIKDGKISLKNIVQ----FVCDEADLIFDMDYGPDLEALLEYLPASA 187
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q +SAT ++ + L L +P ++ L E + +++ + +Q + K + I
Sbjct: 188 QKFFLSATLDHKLESIVSLHLRSPKLIKLEEA---EQKLLTQPIQHLISLDTTEKKYMLI 244
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
L+KL+++Q +IF N++ A++LKLFL +FG K+ + N ELP ++R ++E +N G
Sbjct: 245 YALIKLQILQGYIVIFVNSVTTAYKLKLFLHRFGQKTFLYNPELPVSTRQAVIEGYNLGA 304
Query: 215 FDYLIATDD-----TQTKEKDQSDEG---------GHVDSRKSKKHPKAKLD-------- 252
LIA DD T+ K+ +DEG V +++ P A +
Sbjct: 305 EYVLIAVDDSIKDNTKDGAKNDNDEGVTSAQEVPNEAVAEEQTEHDPSASAERKTPTPAP 364
Query: 253 -----SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN-TGASVSLVSPDEM 306
E G+ RG+DF V V+NF+ P ++ YVHRIGRT R N G +++++ D
Sbjct: 365 MPSAPKEAGIFRGLDFTRVDVVLNFDCPVSSINYVHRIGRTARGANPCGHAITIIHEDSK 424
Query: 307 KIFEEIKSFVGDDENE-DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDL 365
+ I S + + E ++APF Q A+ES RYR DV S+T A++E R ++
Sbjct: 425 ENRGVIASILREQREEFGKELLAPFQFNIQ-ALESFRYRVADVLHSLTPSAIKEYRISEI 483
Query: 366 RNEILNSEKLKAHFEVNPKDLDLLKHDKD----LSKKPPASHLRDVPDYLL 412
++EIL S+ L+ +F KDL L+K K ++ HL+ VP YLL
Sbjct: 484 KSEILASDALRKYFSQQSKDLALIKRIKTNPLIERQRQMTMHLKFVPSYLL 534
>gi|21064833|gb|AAM29646.1| RH74035p [Drosophila melanogaster]
Length = 388
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 173/301 (57%), Gaps = 22/301 (7%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD- 61
L+E C V++ + +S+ + R AL+ PDIV+ATP + G S D
Sbjct: 105 LVESCGKVVRVADIADSSNDTVTQ-RHALSESPDIVVATPANLLAYAEAG-----SVVDL 158
Query: 62 -SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
++ LV+DEADL+ +YGYE D K L +P Q +L+SAT + DV ++K L L+NP
Sbjct: 159 KHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSATLTDDVARMKGLCLNNPVT 218
Query: 121 LTLPEVGDVKDEVIPKN-VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
L L E E++P++ + I E DK + LLKL L++ K++IF N+ID ++
Sbjct: 219 LKLEE-----PELVPQDQLSHQRILAEENDKPAILYALLKLRLIRGKSIIFVNSIDRCYK 273
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239
++LFLE+FGI++ +LN+ELP N R+H + +FN G +D +IA+D E GG
Sbjct: 274 VRLFLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASD-----EHHMEKPGG--K 326
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
S ++K P++ D E RGIDF+ V+ VINF+ P++ Y+HR GRT R S
Sbjct: 327 SATNRKSPRSG-DMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNKRAPSCP 385
Query: 300 L 300
L
Sbjct: 386 L 386
>gi|298707633|emb|CBJ30201.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 818
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 152/223 (68%), Gaps = 13/223 (5%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L+ C+ QV L + + +M A + AAL D+++ATP + L G ++ K D+
Sbjct: 145 LMHYCRDQVSL-LALVDDNMAAQE--AALRDKADVLVATPARLVAHLKAGNVELK---DT 198
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
++ LV+DEADL+LS+GY +D++A++ +P+ CQ LMSAT S++++ LK+++LH+P +L
Sbjct: 199 VETLVVDEADLVLSFGYSEDIRAVTKRLPKICQGFLMSATLSAELEDLKRVVLHSPAVLK 258
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E +D + QF++S +++ DK L + +KL L++ K L F N + ++RLK
Sbjct: 259 LEE--GARD----GRLSQFYLSLADKGDKFLVVFAFIKLGLLEGKGLFFVNETESSYRLK 312
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 224
LFLE+F ++SA+LNAELP NSRLHIL+EFN G+FDYLI TDD+
Sbjct: 313 LFLEQFHVRSAVLNAELPLNSRLHILQEFNRGIFDYLIVTDDS 355
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 20/148 (13%)
Query: 338 VESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD-LS 396
+E RYR ED K VT+++VRE+RA +L+ EI+NS+KL +F+ N DL +L+HDK L
Sbjct: 617 IERFRYRVEDTLKKVTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLKVLRHDKSVLH 676
Query: 397 KKPPASHLRDVPDYLL-------DAKTQEACKMVKLARAAMGNKNSSRRQGP-----RRK 444
HL+ +PDYL+ + TQ K +K AR + RRQG RRK
Sbjct: 677 PLRKLDHLKHIPDYLMPPGLQTGEDPTQRQRKRIKRARG-----GAKRRQGQGLDQGRRK 731
Query: 445 FRKSDPLKSFSAEPTKRAGKGRMKREGR 472
+DPL++F A G + EGR
Sbjct: 732 --DNDPLQTFEASELGADGSYGGEEEGR 757
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
DSEFG RG+DF+ V V+N + P A+ Y HR+GRT R +G ++SLV
Sbjct: 481 DSEFGAARGVDFRGVSFVLNVDFPPTASSYTHRVGRTARGGASGTALSLV 530
>gi|328874326|gb|EGG22691.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 712
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 148/239 (61%), Gaps = 9/239 (3%)
Query: 3 LIELCKGQVQL-KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
L+++C L VV L S + R L PDI+I+TP + L Q+
Sbjct: 124 LLQICFYCTHLINVVHLGSEQSVDEQRGMLRDVPDIIISTPTRLVNHLKN---QNIKLDM 180
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
SL++LV+DEADL+LSYGY++D++ + + +P+ CQ LMSAT + VD+LKKLILH P IL
Sbjct: 181 SLEMLVIDEADLVLSYGYQEDIQTIKSFLPKVCQGFLMSATLTPQVDELKKLILHTPAIL 240
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
L E D+ N+ ++ I D+ L I TLL+L+L+Q K L F N ++LK
Sbjct: 241 RLEE-----DQSEKTNLTEYSIKTVSFDRYLLIFTLLRLKLMQGKILFFVNDTFQCYKLK 295
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
LFLE+F I++A+LN+ELP NSR HI+ +FN G++DYLIATD++ K + + +DS
Sbjct: 296 LFLEQFHIRAAVLNSELPINSRHHIILQFNKGIYDYLIATDESFKSTKSELKDFDEIDS 354
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 99/169 (58%), Gaps = 6/169 (3%)
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
+ P D E+GV RGIDFKNV VINF+ P+ YVHR+GRT R + G ++S V+
Sbjct: 465 RKPSKLADKEYGVARGIDFKNVDIVINFDFPRTYKNYVHRVGRTARGNSKGVALSFVTKR 524
Query: 305 EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQD 364
+ ++I+ E + PF +E RYR EDV SVTK + +R +
Sbjct: 525 NEPLLKKIQR----KRAEHGYNVKPFEF-KMATIEGFRYRVEDVLNSVTKNTISRARKTE 579
Query: 365 LRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPP-ASHLRDVPDYLL 412
L EI+NSEKLK HF+ NPKDL++LKHD L++K HL +P+YL+
Sbjct: 580 LEQEIINSEKLKNHFKENPKDLEILKHDIPLTRKHDLKEHLGYIPEYLV 628
>gi|353231552|emb|CCD77970.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 555
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 166/262 (63%), Gaps = 15/262 (5%)
Query: 6 LCKGQVQ-LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
LCK + + V +++ ++ + PDI+I TP + K L +G+L K L+
Sbjct: 101 LCKYAAKSISSVDISTGHDTDQIKPLILENPDIIIGTPSRLMKVLRSGILSLKD----LR 156
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
+V+DEADL+ ++GYED+++ L + +P+ Q +LMSAT +++ ++ N + +
Sbjct: 157 CIVVDEADLIFTFGYEDEIRDLRSYLPQKIQAILMSATLDDTSKVIRRYLVKNADWVRV- 215
Query: 125 EVGDVKDEVIPKNVQ--QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
E+ D + +P + Q Q+ IS + DK ++ L KL +V+ K LIFTN++D ++L+L
Sbjct: 216 ELPD--EAFLPGDSQLTQYIISAEDNDKYAILIALFKLRIVRGKTLIFTNSVDRCYKLRL 273
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242
FLE+FGI++A+LN+ELP SR H++++FN GL+DYL+ATD++Q ++EGG +K
Sbjct: 274 FLEEFGIRAALLNSELPVKSRSHVIDQFNRGLYDYLLATDESQADHSTSNNEGG----KK 329
Query: 243 SKKHPKAKLDSEFGVVRGIDFK 264
S K P+ + D E+GV RGIDF+
Sbjct: 330 SLKKPRCR-DVEYGVSRGIDFQ 350
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 330 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLL 389
F L + V+ RYRA DV + +T+ VRE+R ++++ E+LNSE+LK +F+ + DL+ L
Sbjct: 349 FQLFRLSEVDGFRYRAADVMRHITRKVVREARLKEIKIELLNSERLKGYFQDHIPDLEAL 408
Query: 390 KHDKDLSKKPPASHLRDVPDYLL 412
+HDK L K HL+DVPDYL+
Sbjct: 409 RHDKPL-KHVAQPHLKDVPDYLV 430
>gi|256088729|ref|XP_002580478.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 500
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 166/262 (63%), Gaps = 15/262 (5%)
Query: 6 LCKGQVQ-LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
LCK + + V +++ ++ + PDI+I TP + K L +G+L K L+
Sbjct: 101 LCKYAAKSISSVDISTGHDTDQIKPLILENPDIIIGTPSRLMKVLRSGILSLKD----LR 156
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
+V+DEADL+ ++GYED+++ L + +P+ Q +LMSAT +++ ++ N + +
Sbjct: 157 CIVVDEADLIFTFGYEDEIRDLRSYLPQKIQAILMSATLDDTSKVIRRYLVKNADWVRV- 215
Query: 125 EVGDVKDEVIPKNVQ--QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
E+ D + +P + Q Q+ IS + DK ++ L KL +V+ K LIFTN++D ++L+L
Sbjct: 216 ELPD--EAFLPGDSQLTQYIISAEDNDKYAILIALFKLRIVRGKTLIFTNSVDRCYKLRL 273
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242
FLE+FGI++A+LN+ELP SR H++++FN GL+DYL+ATD++Q ++EGG +K
Sbjct: 274 FLEEFGIRAALLNSELPVKSRSHVIDQFNRGLYDYLLATDESQADHSTSNNEGG----KK 329
Query: 243 SKKHPKAKLDSEFGVVRGIDFK 264
S K P+ + D E+GV RGIDF+
Sbjct: 330 SLKKPRCR-DVEYGVSRGIDFQ 350
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 330 FPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLL 389
F L + V+ RYRA DV + +T+ VRE+R ++++ E+LNSE+LK +F+ + DL+ L
Sbjct: 349 FQLFRLSEVDGFRYRAADVMRHITRKVVREARLKEIKIELLNSERLKGYFQDHIPDLEAL 408
Query: 390 KHDKDLSKKPPASHLRDVPDYLL 412
+HDK L K HL+DVPDYL+
Sbjct: 409 RHDKPL-KHVAQPHLKDVPDYLV 430
>gi|389745435|gb|EIM86616.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 666
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 150/227 (66%), Gaps = 17/227 (7%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDL-RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
LI+ C+G V ++ +S + L ++ LA PD+V+ TP + +LQ+KS
Sbjct: 113 GLIKYCEGDV---IISNVASGTTTHLQKSLLAEKPDVVVGTPSKL-----LALLQAKSLQ 164
Query: 61 -DSLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHN 117
+L+ LV+DEADL+ SYG+++D++ + + +P+ Q LMSAT + DV+ LK L+L +
Sbjct: 165 LGALESLVIDEADLIFSYGHDEDVRQILSNGYLPKVFQSFLMSATMTEDVETLKGLVLRS 224
Query: 118 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
P IL L E DE N+ Q+ + CSE DK L + +LKL+L++ K +IF N +D +
Sbjct: 225 PAILRLEE-----DEDEAANLSQYSVKCSEVDKFLLVYVILKLKLIKGKCIIFVNDVDRS 279
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 224
+RLKLFLE+F IKS +LN+ELP NSR H+++EFN G++DY+IATD++
Sbjct: 280 YRLKLFLEQFSIKSCVLNSELPLNSRYHVVQEFNKGVYDYIIATDES 326
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 104/175 (59%), Gaps = 16/175 (9%)
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
DSE+GV RGIDF +V V+NF++P ++ Y HR+GRT RA +G S+S + P+ F +
Sbjct: 417 DSEYGVTRGIDFIDVACVLNFDLPPSSRSYTHRVGRTARAGRSGMSLSFIVPESE--FGK 474
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNA--------------VESLRYRAEDVAKSVTKIAV 357
K G E ++ Q A VE+ RYR ED ++VT+ A+
Sbjct: 475 NKVVGGVAGTERDEVVWERIEREQGARGSKVREYKFDMKQVEAFRYRMEDALRAVTRSAI 534
Query: 358 RESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
RE+R ++L+ EILNS+KLKAHFE NP DL+ L+HDK L SH++ VP YLL
Sbjct: 535 REARVKELKQEILNSDKLKAHFEDNPLDLEFLRHDKPLHPTRVQSHMKHVPKYLL 589
>gi|196009458|ref|XP_002114594.1| hypothetical protein TRIADDRAFT_58595 [Trichoplax adhaerens]
gi|190582656|gb|EDV22728.1| hypothetical protein TRIADDRAFT_58595 [Trichoplax adhaerens]
Length = 412
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 169/323 (52%), Gaps = 73/323 (22%)
Query: 93 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN--VQQFWISCSERDK 150
G +++ S DV L+KL+LHNP +L L E +P+ + Q++I C+E DK
Sbjct: 140 GTPTRILTCVKSKDVKSLRKLVLHNPVVLKLQE------SQLPEQDRLDQYFIKCNEEDK 193
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
L I + KL L KL+LE+F IK +LN+ELPQNSR HI++EF
Sbjct: 194 FLLIYAMFKLGL------------------KLYLEQFSIKCCVLNSELPQNSRSHIIDEF 235
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
N G++D +IA+D+T V+
Sbjct: 236 NRGIYDIIIASDET--------------------------------------------VL 251
Query: 271 NFEMPQNAAGYVHRIG-RTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE-NEDSNIIA 328
N + N A + G RT R + G+++SLV+ D+ + + ++ + +D N+D+ ++
Sbjct: 252 NTSVRTNPANKISNKGKRTARGDDVGSALSLVTSDDEALLKSVQDKLSEDYGNDDAAVVK 311
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
P+ N +ES RYRA+D ++VTK AVR++R ++++ E+LNSEKLK +F NPKD+
Sbjct: 312 PYTF-KMNEIESFRYRAQDALRAVTKNAVRDARLREIKKEMLNSEKLKTYFGHNPKDMQA 370
Query: 389 LKHDKDLSKKPPASHLRDVPDYL 411
L+HD L HL++VPDYL
Sbjct: 371 LRHDLVLHPAKVRPHLKNVPDYL 393
>gi|409081610|gb|EKM81969.1| hypothetical protein AGABI1DRAFT_105361 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 654
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 139/219 (63%), Gaps = 13/219 (5%)
Query: 15 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 73
V+ + S A R L+ PD+V+ATP + +LQ+K+ S +L LV+DEADL
Sbjct: 132 VINVASGTTAHLQRLLLSDHPDVVVATPS-----RALALLQAKTLSLSALDTLVIDEADL 186
Query: 74 LLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
+LSYG++ D++ + + +P+ Q LMSAT + DV+ LK + L NP IL L E D
Sbjct: 187 ILSYGHDHDIRQIFSGSYLPKVHQSFLMSATMTEDVEMLKGITLRNPAILKLEEAEDE-- 244
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
++ Q+ + CSE DK L +LKL+LV+ K ++F N +D +RLKLFLE+F IKS
Sbjct: 245 ---AASLSQYAVQCSEVDKFLLTYVILKLKLVKGKCILFVNDVDRCYRLKLFLEQFSIKS 301
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKD 230
+LN+ELP NSR H ++EFN G++DY+IATD+ EKD
Sbjct: 302 CVLNSELPLNSRYHTVQEFNKGVYDYIIATDEGGLAEKD 340
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 23/204 (11%)
Query: 226 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
TK++ + E V S K K KLD E+GV RG+DF +V V+NF++P + Y HR+
Sbjct: 403 TKKRIKQSEDQSVKSTKKSKRAN-KLDKEYGVTRGVDFVDVACVLNFDLPTSTRSYTHRV 461
Query: 286 GRTGRAYNTGASVSLVSP-----------------DEMKIFEEIKSFVGDDENEDSNIIA 328
GRT RA TG S+S V P ++ ++F+ I+ + + I
Sbjct: 462 GRTARAGRTGMSLSFVIPSSEWGKNKVVGCLPNAQNDPRVFKRIEK----QQAARGSQIK 517
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
+ + VE+ RYR ED +SVT+ A++E+R ++L+NE+LNS+KLKA+FE NP DL+
Sbjct: 518 EYKFDMRQ-VEAFRYRMEDALRSVTRAAIKEARIKELKNELLNSDKLKAYFEDNPLDLEH 576
Query: 389 LKHDKDLSKKPPASHLRDVPDYLL 412
L+HDK L H++ +P YLL
Sbjct: 577 LRHDKALRPARVQPHMKHIPKYLL 600
>gi|426196845|gb|EKV46773.1| hypothetical protein AGABI2DRAFT_178983 [Agaricus bisporus var.
bisporus H97]
Length = 654
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 139/219 (63%), Gaps = 13/219 (5%)
Query: 15 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 73
V+ + S A R L+ PD+V+ATP + +LQ+K+ S +L LV+DEADL
Sbjct: 132 VINVASGTTAHLQRLLLSDHPDVVVATPS-----RALALLQAKTLSLSALDTLVIDEADL 186
Query: 74 LLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
+LSYG++ D++ + + +P+ Q LMSAT + DV+ LK + L NP IL L E D
Sbjct: 187 ILSYGHDHDIRQIFSCSYLPKVHQSFLMSATMTEDVEMLKGITLRNPAILKLEEAEDE-- 244
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
++ Q+ + CSE DK L +LKL+LV+ K ++F N +D +RLKLFLE+F IKS
Sbjct: 245 ---AASLSQYAVQCSEVDKFLLTYVILKLKLVKGKCILFVNDVDRCYRLKLFLEQFSIKS 301
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKD 230
+LN+ELP NSR H ++EFN G++DY+IATD+ EKD
Sbjct: 302 CVLNSELPLNSRYHTVQEFNKGVYDYIIATDEGGLAEKD 340
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 117/204 (57%), Gaps = 23/204 (11%)
Query: 226 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
TK++ + E V S K K KLD E+GV RG+DF +V V+NF++P + Y HR+
Sbjct: 403 TKKRIKQSEDQSVKSTKKSKRAN-KLDKEYGVTRGVDFVDVACVLNFDLPTSTRSYTHRV 461
Query: 286 GRTGRAYNTGASVSLVSP-----------------DEMKIFEEIKSFVGDDENEDSNIIA 328
GRT RA TG S+S V P ++ ++F+ I+ + + I
Sbjct: 462 GRTARAGRTGMSLSFVIPSSEWGKNKVVGCLPSAQNDPRVFKRIEK----QQAARGSQIK 517
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
+ + VE+ RYR ED +SVT+ A++E+R ++L+NE+LNS+KLKA+FE NP DL+
Sbjct: 518 EYKFDMRQ-VEAFRYRMEDALRSVTRAAIKEARIKELKNELLNSDKLKAYFEDNPLDLEH 576
Query: 389 LKHDKDLSKKPPASHLRDVPDYLL 412
L+HDK L H+R +P YLL
Sbjct: 577 LRHDKALRPARVQPHMRHIPKYLL 600
>gi|449541864|gb|EMD32846.1| hypothetical protein CERSUDRAFT_108634 [Ceriporiopsis subvermispora
B]
Length = 649
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 139/205 (67%), Gaps = 13/205 (6%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL--S 87
L+ PDI++ATP + LS +LQSK+ S S++ LV+DEADL+LSYG+++D++ +
Sbjct: 140 LSDSPDIIVATPS---RGLS--LLQSKTLSLSSVESLVIDEADLILSYGHDEDVRQIFGG 194
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P+ Q LMSAT + DV+ LK L+L NP IL L E DE N+ Q+ + CSE
Sbjct: 195 GYLPKVFQSFLMSATMTDDVEALKGLVLRNPAILKLEE-----DEDEAANLTQYSVRCSE 249
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
DK L +LKL+L++ K ++F N +D +RLKLFLE+F IKS +LN+ELP NSR H +
Sbjct: 250 VDKFLLAYVILKLKLIKGKCILFVNDVDRCYRLKLFLEQFSIKSCVLNSELPLNSRYHTV 309
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQS 232
+EFN G++DY+IA+D++ + K S
Sbjct: 310 QEFNKGVYDYIIASDESAGRIKQDS 334
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 12/173 (6%)
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE----MK 307
D+E+GV RG+DF +V VINF++P ++ Y HR+GRT RA +G ++S V P E K
Sbjct: 405 DAEYGVSRGVDFIDVSCVINFDLPSSSRAYTHRVGRTARAGRSGMALSFVVPREEWGKNK 464
Query: 308 IFEEIKSFVGDD------ENEDSNIIAPFP--LLAQNAVESLRYRAEDVAKSVTKIAVRE 359
+ ++S D+ E E + + VE+ RYR ED ++VT+ A++E
Sbjct: 465 VVGGVESTRRDERVFARIEKEQAARGSQMKEYQFDMKQVEAFRYRMEDALRAVTRSAIKE 524
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+R ++L++EILNS+KLKAHFE NP DLD L+HDK L H++ VP YLL
Sbjct: 525 ARIKELKSEILNSDKLKAHFEDNPNDLDYLRHDKPLHPTRVQPHMKHVPKYLL 577
>gi|395326974|gb|EJF59378.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 651
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 147/235 (62%), Gaps = 15/235 (6%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS- 60
+L+ C V V ++ A + L+ PDIVIATP + +LQSK S
Sbjct: 113 SLLTYCDADVA--VANASTGTTAHLQKTLLSDNPDIVIATPS-----RALALLQSKDLSL 165
Query: 61 DSLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
SL+ LV+DEADL+LSYG+++D++ + +P+ Q LMSAT + DV+ LK L L +P
Sbjct: 166 GSLESLVIDEADLILSYGHDEDVRQIFGGGYLPKVFQSFLMSATMTEDVEALKGLALRSP 225
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
IL L D +DE N+ Q+ + CSE DK L +LKL+L++ K ++F N +D +
Sbjct: 226 VILKLE---DEEDEA--ANLTQYSVRCSEVDKFLLTYVILKLKLIKGKCILFVNDVDRCY 280
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD 233
RLKLFLE+F IKS +LN+ELP NSR H+++EFN G++DY+IA+D+ K + S+
Sbjct: 281 RLKLFLEQFSIKSCVLNSELPLNSRYHVVQEFNKGVYDYIIASDENSGKAEQDSN 335
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 108/174 (62%), Gaps = 14/174 (8%)
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM----- 306
D+E+GV RG+DF +V VINF++P ++ Y HR+GRT RA TG ++S V P E+
Sbjct: 410 DAEYGVSRGVDFVDVSCVINFDLPASSRAYTHRVGRTARAGRTGMALSFVVPKELWGKNR 469
Query: 307 --------KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVR 358
K EE+ + V ++ + I + + VE+ RYR ED ++VT+ A++
Sbjct: 470 VVGCVESAKRDEEVFARVEREQAARGSQIKEYQFDMKQ-VEAFRYRMEDALRAVTRSAIK 528
Query: 359 ESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
E+R ++L+ EILNS+KLKAHFE NP DL+ L+HDK L SH++ VP YLL
Sbjct: 529 EARIKELKTEILNSDKLKAHFEDNPLDLEYLRHDKPLHPTRVQSHMKHVPKYLL 582
>gi|308159301|gb|EFO61842.1| ATP-dependent RNA helicase [Giardia lamblia P15]
Length = 616
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 204/415 (49%), Gaps = 45/415 (10%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P+I+I+TP + + G + K+ V DEADL+ Y DL+AL +P
Sbjct: 132 PEILISTPSLVMNLIKDGKISLKNIVQ----FVCDEADLIFDMDYGPDLEALLEYLPASA 187
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q +SAT ++ + L L +P ++ L E + +++ + VQ + K + I
Sbjct: 188 QKFFLSATLDQKLENIASLHLRSPKLVKLEET---EQKLLTQPVQHLISLDTTEKKYMLI 244
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
L+KL++++ +IF N++ A++LKLFL +FG K+ + N ELP ++R ++E +N G
Sbjct: 245 YALIKLQILRGYIVIFVNSVTTAYKLKLFLHRFGQKTFLYNPELPVSTRQAVIEGYNLGA 304
Query: 215 FDYLIATDD---------TQTKEKD-------------QSDEGGHVDSRKSKKHPKAKLD 252
LIA DD T++ KD Q + V + + P A +
Sbjct: 305 EYVLIAVDDSIKDSVKDDTKSGTKDGTKGFDDKEAASVQEADNASVMTETAGDDPNASTE 364
Query: 253 S---------EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN-TGASVSLVS 302
E G+ RG+DF V V+NF+ P ++ Y+HRIGRT R N G +++++
Sbjct: 365 KRTSAPSAPKEAGIFRGLDFTRVDVVLNFDCPVSSINYIHRIGRTARGANPCGHAITIIH 424
Query: 303 PDEMKIFEEIKSFVGDDENE-DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
D + + + E ++APF Q A+ES RYR DV +T +++E R
Sbjct: 425 EDSKDNRDVVIDVLRVQREEFGKELLAPFQFNIQ-ALESFRYRVVDVLHGLTPSSIKEYR 483
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD----LSKKPPASHLRDVPDYLL 412
+++ EIL S+ L+ +F KD+ L+K K ++ HL+ VP YLL
Sbjct: 484 LSEIKAEILASDSLRKYFSQQSKDMALIKRIKTNPLIERQRQMTMHLKFVPSYLL 538
>gi|209882032|ref|XP_002142453.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209558059|gb|EEA08104.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 615
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 133/497 (26%), Positives = 251/497 (50%), Gaps = 49/497 (9%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS 60
+++I C ++++ S + + + + +IVI+TP + S+ + +
Sbjct: 97 LSVIRYCGNKIRI------SHLISENSSWSYISKCNIVISTPYDIVN--SSDQDKKVKWL 148
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC----QCLLMSATSSSDVDKLKKLILH 116
++ LV+DEADLL ++GYE ++ + ++P QC+ SAT S ++ L +LH
Sbjct: 149 CNVSCLVVDEADLLFAFGYEKYMEIILELLPNSAGKKYQCIFCSATLSKNLKLLNSKLLH 208
Query: 117 NPYILTLPEVGDVKDE-VIPKN-----VQQFWISCSE-RDKLLYILTLLKLELVQKKALI 169
P + + E+ ++ V+ K+ +++++++CS +K L + L K++++ K LI
Sbjct: 209 KP--ICVNEISQANEKSVLDKSSIEGILKEYYVNCSNITEKWLMLYVLFKMQVIPIKCLI 266
Query: 170 FTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEK 229
F ++IDMA+ ++LFL+KF I + I++ LP ++R I++ FN G D LI D T E
Sbjct: 267 FASSIDMAYSIRLFLDKFDISAGIMSPILPFSTRQLIIQYFNQGTIDILITADITN--EL 324
Query: 230 DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
D+ + S KSK E RGID++ V +V+NF+ P + Y+HRIGRT
Sbjct: 325 DEISTKDILSSAKSK---------EAVAYRGIDYQGVSSVLNFDCPTSVRSYIHRIGRTA 375
Query: 290 RAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVA 349
R ++G +++ ++ D E ++ + ++ D I P + V YR ED
Sbjct: 376 RGNSSGTAITFINKDIPNDVELLQLLIARNKYNDDKGIEPLD-FGPHDVSCFNYRIEDCL 434
Query: 350 KSVTKIAVRESRAQDLRNEILNSEKL--KAHFEVNPKDLDLLK--HDKDLSKKPPAS--- 402
KS+TK +R + ++++ IL+S +L +F +P++ +L+ H LS +
Sbjct: 435 KSITKTNIRRYKLKEIQGLILSSSRLIKGGYFSKHPEERSVLRSYHKHLLSTLAISGTGR 494
Query: 403 -HLRDVPDYL------LDAKTQEACKMVKLARAAMGNK--NSSRRQGPRRKFRKSDPLKS 453
+L+ P YL + Q C A+ + + R++ PR K + D L
Sbjct: 495 EYLKLTPRYLEEIVYPIVQSIQPNCNATTATEQAIYTQFPEALRKKEPRYKLSRYDNLHK 554
Query: 454 FSAEPTKRAGKGRMKRE 470
++ + + K ++K+E
Sbjct: 555 YNTQSKDISRKSQLKKE 571
>gi|159111504|ref|XP_001705983.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
gi|157434075|gb|EDO78309.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
Length = 616
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 130/430 (30%), Positives = 209/430 (48%), Gaps = 49/430 (11%)
Query: 20 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 79
SS A LR+ P+I+I+TP + + + K+ V DEADL+ Y
Sbjct: 121 SSAEAITLRSM----PEILISTPSLVMNLIKDSKISLKNIVQ----FVCDEADLIFDMDY 172
Query: 80 EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ 139
DL+AL +P Q +SAT ++ + L L +P ++ L E + +++ + VQ
Sbjct: 173 GPDLEALLEYLPASAQKFFLSATLDQKLENIVNLHLRSPKLIKLEET---EQKLLTQPVQ 229
Query: 140 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199
+ K + I L+KL++++ +IF N++ A++LKLFL +FG K+ + N ELP
Sbjct: 230 HLISLDTTEKKYMLIYALVKLQILRGYIVIFVNSVTTAYKLKLFLYRFGQKAFLYNPELP 289
Query: 200 QNSRLHILEEFNAGLFDYLIATDDT---------------QTKEKDQSDEGG-------- 236
++R ++E +N G LIA DD+ TK D + G
Sbjct: 290 VSTRQAVIEGYNLGAEYVLIAVDDSIRDSAKDDTKSDTKDGTKASDNKETEGVQEADSSS 349
Query: 237 -------HVDSRKSKKHPKAKLDS-EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRT 288
H S ++K A S E G+ RG+DF V V+NF+ P ++ Y+HRIGRT
Sbjct: 350 MATKAAEHDPSTPAEKQASAPSASKEAGIFRGLDFTRVDVVLNFDCPVSSINYIHRIGRT 409
Query: 289 GRAYN-TGASVSLVSPDEMKIFEEIKSFV-GDDENEDSNIIAPFPLLAQNAVESLRYRAE 346
R N G +++++ D + + + E ++APF Q A+ES RYR
Sbjct: 410 ARGANPCGHAITIIHEDSKDNRDVVLDVLRAQREEFGKELLAPFQFNIQ-ALESFRYRVV 468
Query: 347 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKD----LSKKPPAS 402
DV +T A++E R +++ EIL S+ L+ +F KD+ L+K K ++
Sbjct: 469 DVLHGLTPSAIKEYRLSEIKAEILASDSLRKYFSQQSKDMALIKRIKTNPLIERQRQMTM 528
Query: 403 HLRDVPDYLL 412
HL+ VP YLL
Sbjct: 529 HLKFVPSYLL 538
>gi|302843754|ref|XP_002953418.1| hypothetical protein VOLCADRAFT_63761 [Volvox carteri f.
nagariensis]
gi|300261177|gb|EFJ45391.1| hypothetical protein VOLCADRAFT_63761 [Volvox carteri f.
nagariensis]
Length = 358
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 131/220 (59%), Gaps = 24/220 (10%)
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV---------------- 133
+PR CQC+LMSAT S +V++L+KL+LHNP L L
Sbjct: 125 VPRSCQCILMSATVSEEVERLQKLVLHNPITLNLAGGPGGTGAPGAAEGGGEGRGGLASG 184
Query: 134 --IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ ++Q F+I C DKLL++L LL+L LV KK LIF NT+ RL+LFLE FG++
Sbjct: 185 SGVSADIQHFYIQCPRPDKLLHVLALLRLGLVPKKVLIFVNTVYEGVRLRLFLEAFGVRP 244
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK--- 248
A+LN+ELP NSR HIL FN GLFDYLIATDD + + V K+ K +
Sbjct: 245 ALLNSELPLNSRSHILASFNKGLFDYLIATDDDAAAGGKKGRKKQKVLLGKAGKAARGGE 304
Query: 249 ---AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
A+ D+EFGV RGIDFK V TV+N++ P + GYVHR+
Sbjct: 305 NGGARKDAEFGVTRGIDFKGVRTVLNYDPPSSLQGYVHRV 344
>gi|388583305|gb|EIM23607.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 605
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 136/199 (68%), Gaps = 13/199 (6%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 86
R L+ PDIVI+TP + G LQSKS S +LK L +DEADL+LSYG+ DD+KAL
Sbjct: 132 RLLLSDKPDIVISTPSRL-----IGHLQSKSLSLSTLKTLAIDEADLILSYGHADDVKAL 186
Query: 87 --SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+P+ Q LMSAT + DV+KL+ ++L NP ILTL + +E N++Q+++
Sbjct: 187 LSGGYLPKIYQSFLMSATMTQDVEKLRGMVLRNPAILTLED-----NEDDSSNLKQYYVK 241
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
C E DK L LLKL+L++ K ++F N ++ F+L+LFLE FGI++ +LN ELP NSR
Sbjct: 242 CPENDKYLLTYVLLKLKLIKGKVIMFVNNVERGFKLRLFLEAFGIRAVVLNRELPINSRF 301
Query: 205 HILEEFNAGLFDYLIATDD 223
HI++EFN G++DY+IATD+
Sbjct: 302 HIVQEFNKGVYDYMIATDE 320
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 22/185 (11%)
Query: 239 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 298
D++K+K K + EFG+ RGIDF +V VINF++P+N++ Y HR+GRT RA +G S+
Sbjct: 391 DNKKTKMSKKG--EKEFGISRGIDFVDVACVINFDLPKNSSSYTHRVGRTARAGRSGISL 448
Query: 299 SLV--------SPDEMKIFEEI---KSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 347
+ V +E KI+++I + G +N + VE +YR D
Sbjct: 449 TFVVNGETKKSKRNEEKIWKKISKRQERRGGSQNWE---------FDWKQVEGFKYRVND 499
Query: 348 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 407
K VT AV+E+R ++L+NEILN++KLKAHFE NP D + LKHDK L SHL+ V
Sbjct: 500 ALKMVTPNAVKEARVKELKNEILNNDKLKAHFEDNPVDYEFLKHDKPLHPMRQQSHLKHV 559
Query: 408 PDYLL 412
P YL+
Sbjct: 560 PGYLM 564
>gi|85000803|ref|XP_955120.1| DEAD-box family (RNA) helicase [Theileria annulata strain Ankara]
gi|65303266|emb|CAI75644.1| DEAD-box family (RNA) helicase, putative [Theileria annulata]
Length = 566
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 127/431 (29%), Positives = 202/431 (46%), Gaps = 76/431 (17%)
Query: 23 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 82
P ++L +L+ +IV+ P + L S L L++DEADLL +GY++D
Sbjct: 133 PLTELSNSLS---NIVVTKPSIAVELLK---------SQQLLYLIIDEADLLFEFGYKND 180
Query: 83 LKALSAVIP-----RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK- 136
+ L ++ + Q +L+SAT ++ + L+L P + +P PK
Sbjct: 181 MLKLIEILRNSSKFKSFQSVLLSATLDPEIKNIANLLLFKPVYIDVPYT--------PKL 232
Query: 137 -NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 195
NV+Q+++ +E KLL + LLK+E + ++IF NT + L FL K + I++
Sbjct: 233 GNVKQYYVLVNEDAKLLNLYVLLKMECIPYGSIIFVNTNKTGYYLYCFLRKLCLDINIIS 292
Query: 196 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 255
L R IL+ FN GL LI DD D DE F
Sbjct: 293 KLLSPKLRHTILQSFNQGLLGSLILIDD------DSEDE--------------------F 326
Query: 256 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE----- 310
+ RGIDFKNV+ VINF+ P++ Y HRIGRTGR Y +G+S++ + + ++ +
Sbjct: 327 SLSRGIDFKNVNCVINFDQPKSLGIYKHRIGRTGRNYQSGSSLTFFTNESDQLLQQLVFS 386
Query: 311 -------EIKSFVGDDENEDSNIIAPFPL--------LAQNAVESLRYRAEDVAKSVTKI 355
++K +G + NED N + L + + ES YR DV K +T
Sbjct: 387 GTVSKGSQLKEVIGSENNEDLNGVNEETLDSEIQEIKIGEEMFESFNYRINDVLKMITPK 446
Query: 356 AVRESRAQDLRNEILNSEKLKAHFEVNPKDL--DLLKHDKDLSKKPPASHLRDVPDYLLD 413
V ++ Q +R+ + E+ + + N L +LK+D L KP HL +P YL++
Sbjct: 447 LVEIAQIQSVRHSAIEQEEFLKNVDENDMLLLKSVLKNDNQLL-KPEKKHLTFIPSYLIN 505
Query: 414 AKTQEACKMVK 424
+ Q VK
Sbjct: 506 NQLQSTIDTVK 516
>gi|399216115|emb|CCF72803.1| unnamed protein product [Babesia microti strain RI]
Length = 579
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 189/403 (46%), Gaps = 59/403 (14%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI----- 90
DI+I TP + + L LK L++DE D+L G+E++++ + ++
Sbjct: 139 DILICTPTSFIRDVKVANLHK-----YLKFLLIDEGDMLFLMGFEEEIEKIVKLLRPNAQ 193
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 150
+ Q +++SAT +VDKL +IL+ P ++ D+KDE+ + + I +E DK
Sbjct: 194 TKSFQTVVLSATLDDNVDKLNGMILYKPKLI------DMKDEIKMGVLSELIIKVNENDK 247
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
L I L+ ++ K LIF NTI+ A+ LKL L I ++ L +R I+ F
Sbjct: 248 FLIIYIFLRFSVLPMKCLIFVNTIERAYSLKLLLSGLQIDCVAISPILALETRSSIINSF 307
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
N G F LIA D KL +F + RGIDFK + +
Sbjct: 308 NKGTFKILIACPD--------------------------KLGGKFSLDRGIDFKGITCAV 341
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPF 330
N + P + YVHRIGRT RA + G +++ +S E+ F+ ++ +
Sbjct: 342 NLDAPHSDKDYVHRIGRTARAGSNGIALTFIS-------NEVDHFLLSRQD------IKY 388
Query: 331 PLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK 390
L +E +RYR +DV ++VT A+ ++ Q + L S KLK +FE N D D L+
Sbjct: 389 IELPLGVLEQMRYRFDDVMRNVTPNAISSAQLQAISKSALTSSKLKDYFETNRGDFDALQ 448
Query: 391 ---HDKDLSKKPPASHLRDVPDYLL-DAKTQEACKMVKLARAA 429
D+ HL +P YLL +A T+ ++ K +
Sbjct: 449 IYASQTDIKGVKDKKHLSLIPSYLLSEALTEHLAELRKFVYGS 491
>gi|294894908|ref|XP_002775012.1| ATP-dependent RNA helicase HAS1, putative [Perkinsus marinus ATCC
50983]
gi|239880795|gb|EER06828.1| ATP-dependent RNA helicase HAS1, putative [Perkinsus marinus ATCC
50983]
Length = 590
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 144/452 (31%), Positives = 213/452 (47%), Gaps = 98/452 (21%)
Query: 35 PDIVIATPGCMPKCLSTGVLQS-KSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
P I++ TP CLS VL+S K ++K LV+DEADL+LSYGYE+D+K + + R
Sbjct: 154 PTILVCTPAA---CLS--VLKSRKDLGPTIKHLVIDEADLMLSYGYEEDIKGVLGYLDR- 207
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEV--GDVKDEVIPKNVQQFWISCSERDKL 151
QC+L+SAT + DV+ LK L LH P I+ L E G E +++QF++ +K
Sbjct: 208 YQCMLLSATLNDDVETLKGLCLHKPVIVKLEEAESGAAAGE---GHLKQFYLPLRPDEKY 264
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS-AILNAELPQNSRLHILEEF 210
L + LLKL+L+ K LIF ID A+R KL L+KF + S A+LN ELP SR I+E F
Sbjct: 265 LVVYGLLKLKLLVGKTLIFAKDIDSAYRYKLLLDKFSMGSVAVLNYELPFLSRNQIIESF 324
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
N D LIAT +Q+ G + E + RG+DF +V V+
Sbjct: 325 NMNAIDVLIAT--------NQAVSGSGAE--------------EQAIHRGLDFVDVKAVL 362
Query: 271 NFEMPQNAAGYVHRIGRTGRA--YNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
N +MP A YVHR+GRT RA G +V ++++
Sbjct: 363 NADMPDTAREYVHRVGRTARACCIXXGTTVGHFGTEQLE--------------------- 401
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
AV R +L E+L+S+K+K + N +D
Sbjct: 402 ---------------------------AVAALRQSELMREVLHSDKMKQQLQENTEDAKA 434
Query: 389 LK-----HDKDLSKKPPASHLRDVPDYLLDA-------KTQEACKMVKLARAAMGNKNSS 436
L+ ++ ++ L+D+P+YL+ + + VKLA GN
Sbjct: 435 LRKSLRQNNAKVAGSTIKKSLKDLPEYLVPQSFLNSLDEDGDGSNPVKLAALGKGNSTDG 494
Query: 437 RRQGPRRKFRKSDPLKSFSAEPTKRAGKGRMK 468
++ ++ SDPLK+F + KR G M+
Sbjct: 495 KKGKGMKRKLSSDPLKTFEST-RKRLLTGSMR 525
>gi|392589759|gb|EIW79089.1| ATP-dependent RNA helicase dbp9 [Coniophora puteana RWD-64-598 SS2]
Length = 658
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 141/239 (58%), Gaps = 16/239 (6%)
Query: 3 LIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS 62
L+ C+ V L V S R + PD+V++TP K L + S
Sbjct: 114 LVAYCEKSVVL--VNAASGSETQLQRTMMVEKPDVVVSTPSRALKLLQS----KVLSLSS 167
Query: 63 LKILVLDEADLLLSYGYEDDLKAL--SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
L+ LV+DEADL+LSYG+++D++ + +P+ Q LMSAT + DV+ LK L L NP I
Sbjct: 168 LESLVIDEADLILSYGHDEDIRQIFSGGYLPKVYQSFLMSATMTDDVEVLKGLALRNPAI 227
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
L L E D + Q+ + CSE DK L +LKL L++ K ++F N +D +RL
Sbjct: 228 LKLEEGSDEA-----ALLSQYSVKCSEVDKFLLTYVILKLRLIKGKCILFVNDVDRCYRL 282
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT--QTKE-KDQSDEGG 236
KLFLE+F IKS +LN+ELP NSR H ++EFN G++DY+IATD++ QT++ D DE G
Sbjct: 283 KLFLEQFSIKSCVLNSELPLNSRYHTVQEFNKGVYDYIIATDESNGQTEQDSDSEDEEG 341
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 28/217 (12%)
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
RK+K+H D E+GV RG+DF +V V+NF++P +A Y HR+GRT RA +G ++S
Sbjct: 415 RKNKRH---NPDKEYGVTRGVDFVDVSCVLNFDLPASARSYTHRVGRTARAGRSGMALSF 471
Query: 301 VSPDEM----KIFEEIKSFVGD---------DENEDSNIIAPFPLLAQNAVESLRYRAED 347
V P E K+ + S GD D+ + + + + VE+ RYR ED
Sbjct: 472 VVPREEWGKNKVVGCVPSARGDGEVWARIERDQAARGSKVREYNFDMRQ-VEAFRYRMED 530
Query: 348 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 407
+SVT+ A++E+R ++L+ E+LNSEKLKAHFE NP DL+ L+HDK L SH++ V
Sbjct: 531 ALRSVTRSAIKEARVKELKTEMLNSEKLKAHFEDNPLDLEYLRHDKPLHPTRVQSHMKHV 590
Query: 408 PDYLLDAKTQEACKMVKLARAAMGNKN----SSRRQG 440
P YLL K+ + +GN+ S ++QG
Sbjct: 591 PKYLLP-------KIAPVTDGVVGNRTEAEASEQQQG 620
>gi|156083803|ref|XP_001609385.1| DEAD/DEAH box helicase [Babesia bovis T2Bo]
gi|154796636|gb|EDO05817.1| DEAD/DEAH box helicase, putative [Babesia bovis]
Length = 530
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/389 (29%), Positives = 190/389 (48%), Gaps = 63/389 (16%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP---- 91
++V++ P + + +K +LKI+VLDEADLL +G++ + L+ ++
Sbjct: 140 NVVVSKP-------NMALYHAKEHQATLKIVVLDEADLLFEFGFKSETLQLAEILRNFGR 192
Query: 92 -RGCQCLLMSATSSSDVDKLKKLILHNPYILTL---PEVGDVKDEVIPKNVQQFWISCSE 147
+ Q +L+SAT V L LIL+ P + P +G +K +F++ +E
Sbjct: 193 RKSFQTILLSATLDQHVQNLANLILYKPLFVEAEYKPSMGCIK---------EFYVRLNE 243
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
DKLL++ L+K+E + ALIFTN+ + A+++K L K ++S L+ L R +L
Sbjct: 244 DDKLLFVYALIKMETLPYPALIFTNSDERAYKIKTHLAKLSVESRALSRLLSPRMRQALL 303
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
FN G + LI DD D+ D + RG+DFK V
Sbjct: 304 TSFNQGTINVLIVADD------DRGD--------------------KLCATRGVDFKCVQ 337
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 327
V+NF+ P ++ Y HRIGRTGR G+S++ + +++ + E+++ GD +
Sbjct: 338 CVLNFDAPTDSTTYTHRIGRTGRMGRVGSSITFICDNDLPLLEDLQ---GDPSRHIQELD 394
Query: 328 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 387
P + +++RYR EDV K VTK V S+ Q LR+ L + + + +D
Sbjct: 395 IP-----KGVFDTMRYRVEDVGKGVTKRLVSTSQMQALRHSALLEDAFVTNL--SKRDEV 447
Query: 388 LLKHDKDLSKK---PPASHLRDVPDYLLD 413
LLK + +K HL +P YL++
Sbjct: 448 LLKAVVENDEKRLGVEKRHLAHIPKYLVN 476
>gi|340058667|emb|CCC53027.1| putative ATP-dependent RNA helicase [Trypanosoma vivax Y486]
Length = 596
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 139/488 (28%), Positives = 224/488 (45%), Gaps = 79/488 (16%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+A LA P I++AT + K G + ++ L+ +V+DEADL++S E L+ +
Sbjct: 132 KARLASAP-ILVATAAALGKMCRNGTVTAEDMR-PLRCVVIDEADLMMSIA-ESSLRTVQ 188
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL--------PEVGDVKDEVI----- 134
++IP Q +L SAT + +V +K +LHNP +TL P GD + ++
Sbjct: 189 SLIPPSTQTILASATLTDEVAHIKGQLLHNPVTITLDNEEDGSSPPGGDNTENIVLETRV 248
Query: 135 ---------PKNVQQFWISCSE--RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
K + ++ E R LLY L +L + K LIF N+ D ++L+ F
Sbjct: 249 TVRGGDSKGGKLSHHYLVATDECHRHTLLY--ALFRLGHIDGKTLIFVNSEDSTYKLQSF 306
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT-----------QTKEKDQS 232
L + GI+S + ++ LP N RL+ L F G LI TD T + + Q+
Sbjct: 307 LAQLGIESLVYDSSLPMNVRLNALHSFQTGTVGALICTDGTLENMDRLRDGAEVVSESQA 366
Query: 233 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI---NFEMPQNAA--GYVHRIGR 287
E G +R K L + + RGIDF +V+ VI F P +A Y HR GR
Sbjct: 367 GEVGQGMAR--GKSVTYNLKNAGTLHRGIDFSDVNNVILFDGFSAPTTSAFSRYTHRAGR 424
Query: 288 TGRAYNTGASVSLVSPDEMK-IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAE 346
GR G +++ S + K + ++ ++G + F + ++ L+YR +
Sbjct: 425 AGRGGKDGIVITIFSLYQAKNVTRPLRDYLGGTH----DTFTAFKQMQRSQAAKLQYRVD 480
Query: 347 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA--SHL 404
+V S+T+ + R R + E+ S LK+H + KD +LK SK + +
Sbjct: 481 NVLASITRSSTRRQRVAAVATELTRSAYLKSHM--SEKDGTVLKRILSRSKGSTKCDTAV 538
Query: 405 RDVPDYLLDAKTQEA------CKMVKLARAAMGNKNSSR-----RQGPRRKFRKSDPLKS 453
DVP Y+ + Q A CK V G +N+SR RQ R++ R DP+ S
Sbjct: 539 VDVPHYM---RIQGADSVRSYCKRV-------GARNASREGTATRQSKRKRSR--DPVSS 586
Query: 454 FSAEPTKR 461
++ +R
Sbjct: 587 LTSALKRR 594
>gi|332022664|gb|EGI62950.1| Putative ATP-dependent RNA helicase DDX56 [Acromyrmex echinatior]
Length = 323
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 121/194 (62%), Gaps = 7/194 (3%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
PDIV+ TPG + + L L K SL L++DEADLL S+GYE DLKA+ A +P
Sbjct: 106 PDIVVVTPGRLLQHLKAKNLMLKH---SLDTLIIDEADLLFSFGYEKDLKAVLAYLPTVY 162
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q +L SAT S DV LKKLILHNP IL L E P + + ++ E DK +
Sbjct: 163 QAVLASATLSEDVQSLKKLILHNPAILKLEEPPLAP----PTQLAHYTLAAEENDKAAIL 218
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
LLKL L++ K++IF +T+D ++LKLFLE+FGI + +LN+ELP SR + +FN G
Sbjct: 219 YALLKLHLIRGKSIIFVHTVDRCYKLKLFLEQFGIPTCVLNSELPATSRCRAVSQFNNGT 278
Query: 215 FDYLIATDDTQTKE 228
+D +IA+D+ +E
Sbjct: 279 YDIIIASDEKILEE 292
>gi|71027619|ref|XP_763453.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68350406|gb|EAN31170.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 566
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 206/434 (47%), Gaps = 76/434 (17%)
Query: 20 SSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGY 79
S P ++L +L+ +IVI P + LS + L L++DEADLL +GY
Sbjct: 130 SVKPLTELSNSLS---NIVITKPSIAVELLS---------NQRLLYLIIDEADLLFEFGY 177
Query: 80 EDDLKALSAVIP-----RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 134
++D+ L ++ + Q +L+SAT ++ + L+L+ P + +P
Sbjct: 178 KNDMVKLIEILRNSSKFKSFQSVLLSATLDPEIKNIANLLLYKPIYIDVPYT-------- 229
Query: 135 PK--NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
PK NV+Q+++ +E +KLL + LLK+E + ++IF NT + L FL K +
Sbjct: 230 PKLGNVKQYYVLVNEDNKLLTLYLLLKMECIPYGSIIFVNTNKTGYYLYCFLRKLCLDIN 289
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
I++ L R IL+ FN GL LI DD D DE
Sbjct: 290 IISKLLSPKLRHTILQSFNQGLLGSLILIDD------DSEDE------------------ 325
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
F + RGIDFKNV+ VINF+ P++ Y HRIGRTGR Y +G+S++ + + ++ ++
Sbjct: 326 --FSLSRGIDFKNVNCVINFDKPKSRGIYKHRIGRTGRNYQSGSSLTFFTNESDQLLRQL 383
Query: 313 KSFVGDDE-------NEDSNIIAPFPL-------------LAQNAVESLRYRAEDVAKSV 352
S +D+ NE N + + + + ES +YR DV K +
Sbjct: 384 VSSSANDKDSHLEGVNEAENNLELNGVNEETLDSDVQEIKIGEEIFESFKYRINDVLKMI 443
Query: 353 TKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL--DLLKHDKDLSKKPPASHLRDVPDY 410
T V ++ Q +R+ + E+ + + N L +LK+D L KP HL +P+Y
Sbjct: 444 TPKLVEIAQIQSVRHSAIEQEEFLKNVDENDMLLLKSVLKNDNQL-LKPEKKHLTFIPNY 502
Query: 411 LLDAKTQEACKMVK 424
L++ + Q VK
Sbjct: 503 LINNQLQSTIDSVK 516
>gi|71657202|ref|XP_817120.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma cruzi strain CL
Brener]
gi|70882291|gb|EAN95269.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi]
Length = 592
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 138/498 (27%), Positives = 237/498 (47%), Gaps = 60/498 (12%)
Query: 4 IELCKGQVQL----------KVV--QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLST 51
+ELC+ V++ +VV LTS + R A A P I++ T + K +
Sbjct: 98 VELCEQTVEVVTALAKYVKPRVVVDNLTSRGVVTKARVA-AAP--ILVTTAALLGKLCRS 154
Query: 52 GVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK 111
G + ++ + +L+ +V+DE D ++S E L+A+ +V+P Q +L SAT + V +K
Sbjct: 155 GTVTAEDLA-TLRCVVIDEVDFVISIA-EGSLRAVQSVLPPSVQTILSSATLTDGVVHIK 212
Query: 112 KLILHNPYILTLPEVGDVKDE---------VIPKNVQQFWISCSERDKLLYILT------ 156
+LHNP +TL GD +DE V+ + + I+ ER + Y++
Sbjct: 213 SQLLHNPVTITL-STGD-EDEMNPTEGENIVVESRITKKGINSEERLRHYYLVATEECHH 270
Query: 157 ------LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
L +L ++ K LIF N + ++L+ FL + G+++ + ++ LP N R+ L F
Sbjct: 271 HTLLYALYRLGHIKGKTLIFVNEEEKTYKLQSFLAQLGVEALVYDSNLPLNVRVDTLHRF 330
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE----FGVVRGIDFKNV 266
G L+ TD T + + +++ ++ H K +E + RGIDF +V
Sbjct: 331 QVGSVGTLVCTDGTLESVDNLQESIPGAEAQATRMHSKKGKRTEDRHDGALQRGIDFSDV 390
Query: 267 HTVINFE---MPQNAA--GYVHRIGRTGRAYNTGASVSLVSPDE-MKIFEEIKSFVGDDE 320
V+ F+ P +A Y HR+GR GRA +G +++L + + ++ ++ +G
Sbjct: 391 RNVVLFDGIAHPTTSAFSRYTHRVGRAGRAGKSGMAITLFTLQQAQRVTRHLRRHLGATH 450
Query: 321 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 380
+ PF L + L+YR ++V S+T+ + R R + E+ S LK+H
Sbjct: 451 ----DTFEPFKQLRRQEAAKLQYRVDNVLFSITRSSTRRQRISSVAAELTRSAYLKSHM- 505
Query: 381 VNPKDLDLLKHDKDLSKKPPA--SHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR 438
+ KD +L+ SKK + L DVP Y+ A K K RA +K+SS
Sbjct: 506 -SQKDEAVLQRILSRSKKTTKCDTTLLDVPHYMHIEGADSAEKYRKRVRARTSSKSSSAS 564
Query: 439 QGPRRKFRKSDPLKSFSA 456
Q PR + R DPL ++
Sbjct: 565 QQPRTRSR--DPLSRVAS 580
>gi|261334450|emb|CBH17444.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 601
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 136/514 (26%), Positives = 229/514 (44%), Gaps = 70/514 (13%)
Query: 5 ELCKGQVQLK------------VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTG 52
ELCK V++ V LTS + ++ A P I+++T + K G
Sbjct: 99 ELCKQTVEVANALTRYVKPRIIVNDLTSRVSTANALRLTAAP--ILVSTAASLGKLCRNG 156
Query: 53 VLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKK 112
+ S L+ +V+DEADL++S E L+A+ +V+P Q +L SAT + V ++K
Sbjct: 157 SVTSDDMK-PLRCVVIDEADLIMSIA-EGSLRAVQSVLPTSAQTILASATLTDGVAQIKG 214
Query: 113 LILHNPYILTL-PEVGD-----------VKDEVIPKNV-------------QQFWISCSE 147
+LHNP ++L P+ G+ +D V+ V + +S E
Sbjct: 215 QLLHNPITVSLKPDDGEKEPTGCEGPVGAEDVVLESRVTVRGGAAAAGTLRHYYLVSTDE 274
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+ L +L ++ K L+F N+ D ++L FL + GI + + ++ LP N R+ L
Sbjct: 275 CHHHTLLYALYRLGHIKGKTLVFVNSEDTTYKLHNFLAQLGINALVYDSNLPMNVRVDAL 334
Query: 208 EEFNAGLFDYLIATDDT-----QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG------ 256
F G L+ TD T + + DE + +S K K + G
Sbjct: 335 RRFQTGKVGTLVCTDGTLESLDRMRGATDGDEETTTSTPRSNSRGKRKSLAAGGDEGGSA 394
Query: 257 VVRGIDFKNVHTVINFEMPQNAAG-----YVHRIGRTGRAYNTGASVSLVSPDEM-KIFE 310
+ RGIDF +V VI F+ NA Y HR+GR GR G +++ ++ + K+ +
Sbjct: 395 LHRGIDFSDVSNVILFDGVTNATTSDFSRYTHRVGRAGRGNKDGVAITFLTLHQARKVKQ 454
Query: 311 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
+++ ++G APF L ++A L+YR ++V S+T+ + R R + E+
Sbjct: 455 QLRDYLGGTFQS----FAPFKQLDRHAASRLQYRVDNVLASITRSSTRRQRVAAVAAELT 510
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA--SHLRDVPDYLLDAKTQEACKMVKLARA 428
S L +H KD +LK SK + DVP+Y+ A + RA
Sbjct: 511 RSAHLMSHM--GDKDSGVLKRILSRSKGDTKCDQTVVDVPEYMRIKGADSAESYRRRVRA 568
Query: 429 AMGNKNS-SRRQGPRRKFRKSDPLKSFSAEPTKR 461
+ + ++R P+ R DPL S ++ +R
Sbjct: 569 PKKHTTAVAKRSAPK---RSRDPLGSLTSSLKRR 599
>gi|71755317|ref|XP_828573.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833959|gb|EAN79461.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 601
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 134/513 (26%), Positives = 229/513 (44%), Gaps = 68/513 (13%)
Query: 5 ELCKGQVQLK------------VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTG 52
ELCK V++ V LTS + ++ A P I+++T + K G
Sbjct: 99 ELCKQTVEVANALTRYVKPRIIVNDLTSRVSTANALRLTAAP--ILVSTAASLGKLCRNG 156
Query: 53 VLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKK 112
+ S L+ +V+DEADL++S E L+A+ +V+P Q +L SAT + V ++K
Sbjct: 157 SVTSDDMK-PLRCVVIDEADLIMSIA-EGSLRAVQSVLPTSAQTILASATLTDGVAQIKG 214
Query: 113 LILHNPYILTL-PEVGD-----------VKDEVIPKNV-------------QQFWISCSE 147
+LHNP ++L P+ G+ +D V+ V + +S E
Sbjct: 215 QLLHNPITVSLKPDDGEKEPTGCEGPVGAEDVVLESRVTVRGGAAAAGTLRHYYLVSTDE 274
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+ L +L ++ K L+F N+ D ++L FL + GI + + ++ LP N R+ L
Sbjct: 275 CHHHTLLYALYRLGHIKGKTLVFVNSEDTTYKLHNFLAQLGINALVYDSNLPMNVRVDAL 334
Query: 208 EEFNAGLFDYLIATDDT-----QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG------ 256
F G L+ TD T + + DE + +S K K + G
Sbjct: 335 RRFQTGKVGTLVCTDGTLESLDRMRGATDGDEETTTSTPRSNSRGKRKSLAAGGDEGGSA 394
Query: 257 VVRGIDFKNVHTVINFEMPQNAAG-----YVHRIGRTGRAYNTGASVSLVSPDEM-KIFE 310
+ RGIDF +V VI F+ NA Y HR+GR GR G +++ ++ + K+ +
Sbjct: 395 LHRGIDFSDVSNVILFDGVTNATTSDFSRYTHRVGRAGRGNKDGVAITFLTLHQARKVKQ 454
Query: 311 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
+++ ++G APF L ++A L+YR ++V S+T+ + R R + E+
Sbjct: 455 QLRDYLGGTFQS----FAPFKQLDRHAASRLQYRVDNVLASITRSSTRRQRVAAVAAELT 510
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA--SHLRDVPDYLLDAKTQEACKMVKLARA 428
S L +H KD +LK SK + DVP+Y+ A + RA
Sbjct: 511 RSAHLMSHM--GDKDSGVLKRILSRSKGDTKCDQTVVDVPEYMRIKGADSAESYRRRVRA 568
Query: 429 AMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKR 461
+ + ++ +++ R DPL S ++ +R
Sbjct: 569 PKKHTTAVAKRSAQKRSR--DPLGSLTSSLKRR 599
>gi|440799062|gb|ELR20123.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 762
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 181/384 (47%), Gaps = 71/384 (18%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PDIV+ATPG + L ++SF+ +++ ILVLDEAD LLS G+ D+L+ +
Sbjct: 309 AALRRHPDIVVATPGRIIDHLRN----AQSFTLETVDILVLDEADRLLSLGFADELEQII 364
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEVGDVKDEVIPKNVQQFWISCS 146
P Q LL SAT + +VD+L L L+ P + L P + + +QQ +I
Sbjct: 365 KFCPPNRQTLLFSATMTEEVDRLASLSLNRPVRVRLDPNMR------VASGIQQEFIKIK 418
Query: 147 E-----RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
E RD +L L +K+ LIF A RLK+ G+K+A L+ L QN
Sbjct: 419 EAREFDRDAMLLALCTRSF---KKRVLIFFRAKKEAHRLKVIFGLAGLKAAELHGNLSQN 475
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
RL LE+F G FDYL+ATD RG+
Sbjct: 476 QRLEALEKFRDGNFDYLLATD---------------------------------LAARGL 502
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D + T+IN+ M + Y+HR+GRT R ++G SV+ +S + K+F+EI ++
Sbjct: 503 DILGIETIINYNMARTVESYIHRVGRTARWGHSGKSVTFISEQDRKVFKEI--MKSTNQK 560
Query: 322 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 381
+ +I P ++ R + + + +++I E + LR + + K +
Sbjct: 561 VSNRVIPP------KIIDQWREKIDSMKGDISQIFAMEYEEKQLRLTQMEASKTQ----- 609
Query: 382 NPKDLDLLKHDKDLSKKPPASHLR 405
++++H ++ +PP + +
Sbjct: 610 -----NMIEHHDEIMSRPPRTWFQ 628
>gi|355683389|gb|AER97091.1| DEAD box polypeptide 56 [Mustela putorius furo]
Length = 251
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 120/211 (56%), Gaps = 10/211 (4%)
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
SR HI+ +FN G +D +IATD + G + K +A D E GV RGI
Sbjct: 3 SRCHIISQFNQGFYDCVIATDAEVLGAPIKGKRRG-----RGSKGDRAS-DLEAGVARGI 56
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
DF +V V+NF++P Y+HR GRT RA N G ++ V P E I+ +G++
Sbjct: 57 DFHHVSAVLNFDLPPTPEAYIHRAGRTARANNPGMVLTFVLPIEQSHLHMIEELLGEN-- 114
Query: 322 EDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEV 381
+ ++ P+ + +E RYR D +SVTK A+RE+R ++++ E+L+SE+LK +FE
Sbjct: 115 -GAPVLLPYQFRMEE-IEGFRYRCRDAMRSVTKQAIREARLKEIKEELLHSERLKTYFED 172
Query: 382 NPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
NP+DL LL+HD L HL VPDYL+
Sbjct: 173 NPRDLQLLRHDLPLHPAVVKPHLGHVPDYLV 203
>gi|403223027|dbj|BAM41158.1| DEAD-box family RNA helicase [Theileria orientalis strain Shintoku]
Length = 571
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 183/393 (46%), Gaps = 68/393 (17%)
Query: 60 SDSLKILVLDEADLLLSYGYEDDLKALSAVIP-----RGCQCLLMSATSSSDVDKLKKLI 114
S L+ LV+DEADLL +GY+ D+ L ++ + Q +L+SAT ++ + L+
Sbjct: 164 SQELEYLVVDEADLLFEFGYKKDMLKLIELLRSTSKFKKFQAVLLSATLDYEIKNIANLL 223
Query: 115 LHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTI 174
L+ P + +P + V +++I E++KL+ + LLK+E + ++IF N+
Sbjct: 224 LYKPVYVDVPFTQKLG------TVNEYYILVEEKNKLVTLYVLLKMESIPYGSIIFVNSN 277
Query: 175 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 234
+ L FL K + I++ L R IL+ FN GL LI DD E DQ
Sbjct: 278 KKGYHLYCFLRKLSLDINIVSKLLSPKLRHTILQNFNQGLIGCLIVIDD----ETDQ--- 330
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
+ + RG+DF N+ VINF+ P++ Y HRIGRTGR Y
Sbjct: 331 -------------------DMNLSRGVDFVNLKCVINFDEPKSLEIYKHRIGRTGRNYQE 371
Query: 295 GASVSLVSPDE-------MKIFEEIKSFV------------GDDENEDSNIIAPFPLLAQ 335
G+S++ + + K FEE + GDDE + L +
Sbjct: 372 GSSLTFFTKRDDDLLLKLTKGFEENSAHSLQLNEQVEGQEHGDDEGGLKRLT-----LDE 426
Query: 336 NAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL----DLLKH 391
+ ES +YR D+ K++T V ++ Q +R+ + E+ + VN D+ +LK+
Sbjct: 427 SVFESFKYRVNDILKTITPKLVETAQMQSVRHSAIEQEEFLKN--VNENDVLLLKSVLKN 484
Query: 392 DKDLSKKPPASHLRDVPDYLLDAKTQEACKMVK 424
D L KP HL +P YL+D Q + +K
Sbjct: 485 DNQLL-KPEKKHLTYIPKYLVDENLQNVVEDIK 516
>gi|298706016|emb|CBJ29130.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 944
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 174/374 (46%), Gaps = 61/374 (16%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
A L PDIVI TPG M L+ + D ++ILVLDEAD LL G+++++ L
Sbjct: 424 AELRARPDIVICTPGRMVDHLTN---SASVHMDDVEILVLDEADRLLELGFQEEVAELVK 480
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI---SC 145
P G Q LL SAT ++ VD L L L+ P + + P+ + Q ++
Sbjct: 481 SCPIGRQTLLFSATMNTKVDDLASLALNKPVRVKASPMNSA-----PQRLVQEFVRIRQS 535
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
E+D+ +L+LL + K ++F +T +A RL + L GI++A L+ L RL
Sbjct: 536 REQDREAILLSLL-TRTFKTKTIVFFDTKILAHRLNIVLGIAGIRAAELHGNLAMTQRLE 594
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
L+ F +G L+ATD RG+D
Sbjct: 595 ALDRFKSGDVTVLVATDL---------------------------------AARGLDITG 621
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 325
VHTVINFEMP++A Y+HR+GRT RA G SV+L+ + +E+ G+ S
Sbjct: 622 VHTVINFEMPRSADSYIHRVGRTARAGCGGRSVTLIGESRRIVMKEVLKTQGEGVEIKSR 681
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
+ Q+A++ R + E + SV I E ++ R ++ +++
Sbjct: 682 AV------PQSAIDHFRSKIEGMEASVKAILTEEKVEKEERCAMMEADRA---------- 725
Query: 386 LDLLKHDKDLSKKP 399
++L++H K++ +P
Sbjct: 726 VNLVEHQKEIHARP 739
>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
Length = 754
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 148/294 (50%), Gaps = 44/294 (14%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PD+V+ATPG L V S F+ DSL ILVLDEAD +LS G+ D+L +
Sbjct: 292 AALRQRPDVVLATPGR----LIDHVRNSVGFNLDSLDILVLDEADRMLSEGFADELTEII 347
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
P+ Q +L SAT + VD+L K+ L+ P L + D K +Q+F E
Sbjct: 348 KACPKSRQTMLFSATMTDSVDELIKMSLNKPVRLFV----DPKRSTARGLIQEFVRIRKE 403
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
D+ ++ L K + + K +IF + +A ++++ G+K A L+ +L Q RL L
Sbjct: 404 SDRPAMLVALCK-QTYKHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQAL 462
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+ F G DYL+ATD L S RG+D K V
Sbjct: 463 QSFREGSVDYLMATD----------------------------LAS-----RGLDIKGVE 489
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDE 320
TV+N++MP A Y+HR+GRT RA G SV+LV + K+ + IK G+D+
Sbjct: 490 TVVNYDMPGQMAQYLHRVGRTARAGRKGKSVTLVGEADRKLLKAAIKHAAGEDQ 543
>gi|339245489|ref|XP_003378670.1| putative ATP-dependent RNA helicase DDX56 [Trichinella spiralis]
gi|316972407|gb|EFV56085.1| putative ATP-dependent RNA helicase DDX56 [Trichinella spiralis]
Length = 909
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/408 (26%), Positives = 187/408 (45%), Gaps = 92/408 (22%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+++ V L + A R +L PDIV++TP + L L S ++LK V+DEA
Sbjct: 132 EIQCVDLVIAEHAVAQRFSLNSNPDIVVSTPSRLLAQLKQNNL---SLRETLKYFVVDEA 188
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D L++S S++ ++ +
Sbjct: 189 D------------------------LVLSYGYESEITEIISYL----------------- 207
Query: 132 EVIPKNVQQFWISCS--ERDKLLYILTL-----LKLELVQKKALIFTNTIDMAFRLKLFL 184
P N Q F S + E KLL LTL LK+E Q A D L
Sbjct: 208 ---PNNYQAFLTSATMNENVKLLKKLTLHNAVILKIEEAQLPA------ADQ-------L 251
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244
++ I R HI+++FN+GL+D +IA+D+ + ++ + G + + K
Sbjct: 252 TQYHI-------------RCHIVQQFNSGLYDTIIASDEISVESPEERKQSGTIIKLEKK 298
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
+ + RGIDF + VINF+ P+ Y+HR+GRT RA+N G ++S +
Sbjct: 299 ESTAS---------RGIDFNQISNVINFDFPKTVEEYIHRVGRTARAWNQGTALSFSTKR 349
Query: 305 EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQD 364
E K +K + + + + P+ + + ++ YR D ++ T +AV+E+R ++
Sbjct: 350 EAKFVSRVKKALA--KQYEGEFLKPYRINMEE-LDGFHYRCLDALRAATTLAVKEARLKE 406
Query: 365 LRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
+R E+L S KLK++F NP+DL L++HD+ + HL+ VP+Y++
Sbjct: 407 IREEVLKSTKLKSYFVENPRDLQLIRHDRIFKRNRSLKHLKHVPEYIV 454
>gi|449684384|ref|XP_002156411.2| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Hydra magnipapillata]
Length = 544
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 181/388 (46%), Gaps = 59/388 (15%)
Query: 19 TSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSY 77
T + + A L PD+VIATPG + L + SF+ +++ILVLDEAD +L
Sbjct: 102 TGGLDSRSQEAILRKNPDVVIATPGRLIDHLHN----TPSFNLQTIEILVLDEADRMLEE 157
Query: 78 GYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 137
+ D +K + + PRG Q +L SAT + +V+ L L L+NP L + + DV + +
Sbjct: 158 HFHDQMKEIIRLCPRGRQTMLFSATMTDEVNALMSLSLNNPVKLFVDQNTDVASSLHQEF 217
Query: 138 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAE 197
V+ S E D+L ++ L Q + L+F T +A +L++ FG+K+A L+
Sbjct: 218 VR--IRSTREADRLAVVVALCCRSFNQ-QTLVFLQTKVLAHKLRIIFGLFGLKAAELHGN 274
Query: 198 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV 257
L Q RL LE+F D L+ATD
Sbjct: 275 LTQLQRLEALEKFKNNEVDILVATD---------------------------------LA 301
Query: 258 VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RG+D V TVI+F MP Y+HR+GRT RA G S++LV E K+ +E+
Sbjct: 302 ARGLDIVGVKTVISFNMPTTIKSYIHRVGRTARAGKAGRSITLVGEKERKMLKEVV---- 357
Query: 318 DDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKA 377
+++ I +L+ VE + + E K + +I E A+ LR A
Sbjct: 358 ----KNAKIPVKNRILSTEVVEKYKNKLESFEKDIKEILKEEESAKQLR---------VA 404
Query: 378 HFEVNPKDLDLLKHDKDLSKKPPASHLR 405
E+N K +L++H ++ +P + ++
Sbjct: 405 EMEMN-KAKNLIEHHDEIMSRPAKTFIK 431
>gi|401885525|gb|EJT49639.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
gi|406694842|gb|EKC98161.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 804
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 187/393 (47%), Gaps = 60/393 (15%)
Query: 8 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKIL 66
+G + ++ L + + AL PDI+IATPG + L+ + SF+ +L IL
Sbjct: 307 RGGLDVRFALLVGGLSLNAQAHALRTLPDILIATPGRLIDHLTN----TPSFTLGALDIL 362
Query: 67 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 126
V+DEAD +L G+ D+L+ + PRG Q +L SAT + VD+L KL L P + +
Sbjct: 363 VIDEADRMLEAGFTDELEEIVRQCPRGRQTMLFSATMTDSVDELVKLSLDRPVRVFV--- 419
Query: 127 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 186
D + Q+F SE + +LTL K V +KA+IF + +A ++++
Sbjct: 420 -DKERNTAAGLTQEFVRVRSEETRSPALLTLCK-RTVHEKAIIFFRSKALAHQMRVVFGL 477
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
G+ +A L+ L Q RL L +F AG DYL+ATD
Sbjct: 478 CGLVAAELHGNLTQEQRLVALNDFKAGRVDYLLATDLAS--------------------- 516
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
RG+D K V TVIN++MP A YVHR+GRT RA G S+SLV +
Sbjct: 517 ------------RGLDIKGVETVINYDMPGQLAQYVHRVGRTARAGRKGRSISLVGEPDR 564
Query: 307 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
K+ + + D + II P AV+++ + +++ + ++ + E + LR
Sbjct: 565 KMLKAVMKR-SDKDQIRHRIIPP------EAVQAMSAKLDELKEEISAVLAEEREEKLLR 617
Query: 367 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 399
+A E+ K ++++H+ ++ +P
Sbjct: 618 ---------QADMELR-KGQNMVEHEAEIYSRP 640
>gi|86279698|gb|ABC94504.1| DEAD/H box 56 RNA helicase [Ictalurus punctatus]
Length = 168
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 103/157 (65%), Gaps = 5/157 (3%)
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
D E+GV RG+DF+N+ VINF+ P + Y+HR+GRT RA N G +++ VS E+ + EE
Sbjct: 16 DQEYGVSRGVDFQNIANVINFDFPASLESYIHRVGRTARADNKGTALTFVSHSELSLLEE 75
Query: 312 IKSFVGDDENEDSNIIAPFPL-LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
+++ + EDS A P + +E RYR D +SVTK AV+E+R ++++ E+L
Sbjct: 76 VENAL----TEDSRNCALKPYGFKMDEIEGFRYRCRDAMRSVTKQAVKEARIKEIKQELL 131
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDV 407
NSEKL+ +FE NP+DL LL+HDKDL HLR+V
Sbjct: 132 NSEKLQMYFEDNPRDLQLLRHDKDLHPAIIKPHLRNV 168
>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
Length = 730
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 123/471 (26%), Positives = 210/471 (44%), Gaps = 101/471 (21%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLK 64
LC G + LKV + +LR PDI+IATPG V S+ FS D+++
Sbjct: 335 LCVGGLSLKVQE-------QELRKR----PDIIIATPGR----FIDHVRNSQGFSVDNIE 379
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
I+V+DEAD +L G+ D+L + + P+ Q +L SAT + VD L +L L+ P + +
Sbjct: 380 IMVIDEADRMLEDGFADELNEIVKLCPKSRQTMLFSATMTEKVDDLVRLSLNRPVRIFV- 438
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
D K + VQ+F +R++L +L + ++ +IF A ++++
Sbjct: 439 ---DAKKATAKRLVQEFIRVRPQREQLRPAMLVHICKTFFHRRVIIFFRNKAFAHKMRII 495
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKS 243
G+ + ++ L Q R+ LE+F G DYL+ATD
Sbjct: 496 FGLVGLNATEIHGSLSQEQRVRALEDFRDGKVDYLLATDVAS------------------ 537
Query: 244 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
RG+D K V VIN+E P + Y+HR+GRT RA +G ++SLV
Sbjct: 538 ---------------RGLDIKGVEFVINYEAPASHEIYLHRVGRTARAGRSGRAISLVGE 582
Query: 304 DEMKIFEEIKSFVGDDENEDSNIIA---PFPLLAQNAVESLRYRAEDVAKSVTKIAVRES 360
++ K+ IK + EN+ N+++ FP R E + K + ++
Sbjct: 583 NDRKV---IKDVLKSSENQHDNVVSRNLDFP------------RVEAIGKELEEL----- 622
Query: 361 RAQDLRNEILNSEKLKAHFEVNPKDL----DLLKHDKDLSKKPPASHLRDVPDYLLDAKT 416
+D +++ EK + H ++ +DL ++LKH ++ +P + + K
Sbjct: 623 --EDTVKQVMEEEKQERHIKIAERDLKKGENILKHQDEIKARPART-------WFQTEKE 673
Query: 417 QEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKGRM 467
++A K +A P K +K+ + +A P K+ + RM
Sbjct: 674 KKASKTAATGKAV-----------PLSKRKKAMDAEEAAARPYKKTRQDRM 713
>gi|405958064|gb|EKC24228.1| Putative ATP-dependent RNA helicase DDX56 [Crassostrea gigas]
Length = 521
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 120/202 (59%), Gaps = 12/202 (5%)
Query: 5 ELC-KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
ELC + L V T + LR L PDI++ATP + G L SL
Sbjct: 173 ELCHQAYKNLMVYDSTYRVHVHILRPMLMEKPDIIVATPTRALAHIKAGNL---DLRQSL 229
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
++L++DEADLL S+GYEDD++ + + +P+ Q LMSAT S DV LK+++LHN IL L
Sbjct: 230 ELLIIDEADLLFSFGYEDDVRGILSNLPKIYQAFLMSATLSEDVRALKRMVLHNAVILKL 289
Query: 124 PEVGDVKDEVIPKNVQ--QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
E +P+ Q Q+ I C E+DK + L+KL L++ K++IF N ++ ++LK
Sbjct: 290 EE------SQLPEASQLTQYHIKCEEQDKFTLVYALMKLNLLRGKSIIFVNEVNRCYKLK 343
Query: 182 LFLEKFGIKSAILNAELPQNSR 203
LFLE+F I + +LN+ELP NSR
Sbjct: 344 LFLEQFAIPACVLNSELPVNSR 365
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 52/197 (26%)
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
V+N E+P N+ RT R N G+++S VS +M +
Sbjct: 355 VLNSELPVNS--------RTARGDNQGSALSFVSVKDMDLL------------------- 387
Query: 329 PFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDL 388
ED + VTK A+RE+R ++++ E+L S KLK +FE NP+DL +
Sbjct: 388 ----------------GEDAMRMVTKTAIREARLKEIKQEMLASNKLKTYFEDNPRDLQV 431
Query: 389 LKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRR---KF 445
L+HDK L HL++VPDYL+ + M + + + +GP + K+
Sbjct: 432 LRHDKSLHTVKVQKHLKNVPDYLVPQTLRHMRGMSDKPGKSKARRKNMAPKGPTKAEIKY 491
Query: 446 ------RKSDPLKSFSA 456
RK+DPL+SF +
Sbjct: 492 KVGGNKRKADPLRSFES 508
>gi|342185613|emb|CCC95097.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 598
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 124/465 (26%), Positives = 213/465 (45%), Gaps = 72/465 (15%)
Query: 5 ELCKGQVQLK------------VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTG 52
ELCK V++ V LT P + +R LA P IVI T + K +G
Sbjct: 99 ELCKQTVEVANALARYVKPRIIVNDLTLRGPTTGMR--LAAAP-IVITTAAALGKLCRSG 155
Query: 53 VLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKK 112
+ S+ L+ +V+DEADL++S E+ L+ + ++IP Q +L SAT + V +K
Sbjct: 156 GVASEEL-KPLRCVVIDEADLIISIA-ENSLRLVQSLIPPSTQTILASATLTDGVVHVKG 213
Query: 113 LILHNPYILTL----------PEVGDVKDEVIPKNV-------------QQFWISCSERD 149
+L NP ++L P + D ++ V+ V + ++ E
Sbjct: 214 QLLRNPVTISLNPDNREPPGAPALADSENIVLESRVTVRGAGADGGKLSHYYLVATDECH 273
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
+ L +L +Q K L+F N+ D ++L FLE+ G+ + + ++ LP N R+ L
Sbjct: 274 HHTLLYALYRLGHIQGKTLVFVNSEDTTYKLHSFLEQLGVSALVYDSNLPMNVRIDALHR 333
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHV----------DSRKSKKHPKAKLDSEFGVV- 258
F G L+ TD T + DQ E G+V + K K+ + + G
Sbjct: 334 FQTGAVGTLVCTDGT-LECLDQLQEKGNVAGSEVAEATTPNHKGKRKAISSCEGSPGASA 392
Query: 259 --RGIDFKNVHTVINFEMPQNAAG-----YVHRIGRTGRAYNTGASVSLVSPDEM-KIFE 310
RGIDF +V VI F+ +A+ Y HR+GR R G +++ ++ + K+ +
Sbjct: 393 LHRGIDFSDVRNVILFDGVPSASNAAFSRYTHRVGRAARGNKDGMAITFLTLHQARKVKQ 452
Query: 311 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
++ ++G + APF + + + L+YR ++V S+T+ + R R + E+
Sbjct: 453 PLREYLGGKFSS----FAPFKQMDRGSASRLQYRVDNVLASITRSSTRRQRVAAVAAELT 508
Query: 371 NSEKLKAHFEVNPKDLDLLK----HDKDLSKKPPASHLRDVPDYL 411
S L +H + KD +L+ K ++K L DVP+Y+
Sbjct: 509 RSAYLTSHM--SDKDGAVLQRIISRTKGMTKCDKT--LTDVPEYM 549
>gi|345563744|gb|EGX46729.1| hypothetical protein AOL_s00097g477 [Arthrobotrys oligospora ATCC
24927]
Length = 854
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 140/282 (49%), Gaps = 43/282 (15%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALS 87
A L PDIVIATPG + S SF +D ++ILVLDEAD +L G+ D+L +
Sbjct: 435 AELRQRPDIVIATPGRFIDHMRN----SASFHTDGIEILVLDEADRMLEDGFADELDEIL 490
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCS 146
+P+ Q +L SAT + VDKL ++ + P L + D K + Q+F I
Sbjct: 491 KTLPKSRQTMLFSATMTDSVDKLVRVGMQKPVRLLV----DSKKSTVATLTQEFIRIRPG 546
Query: 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
L +L LL EL + + ++F + A R+++ G+K+A L+ L Q R+
Sbjct: 547 REGGRLAMLVLLATELYKSRCIVFFRSKVYAHRVRIIFGLLGLKAAELHGSLSQEQRIKA 606
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
+E+F G D+L+ATD L S RG+D KNV
Sbjct: 607 VEQFRDGTVDFLLATD----------------------------LAS-----RGLDIKNV 633
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
VINFE+PQ+ Y HR+GRT RA +G +++L + + KI
Sbjct: 634 SYVINFELPQSHEIYTHRVGRTARAGRSGRAITLAAEADRKI 675
>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
Length = 771
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 151/311 (48%), Gaps = 44/311 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
++V + + A L PDIVIATPG L + S SF+ D+L +LVLDEA
Sbjct: 281 IEVALIVGGLSLKSQEATLRARPDIVIATPGR----LIDHIHNSPSFTLDNLDVLVLDEA 336
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +LS G+ D+L + P+ Q +L SAT + VD+L ++ L P L + D K
Sbjct: 337 DRMLSDGFADELTEIIKACPKSRQTMLFSATMTDSVDELVRMSLDKPVRLFV----DPKR 392
Query: 132 EVIPKNVQQFWISCSERDKLLY-ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+Q+F + R+K +L L + + +IF + +A +L++ G+K
Sbjct: 393 STAKGLIQEFVRVRAGREKERSPLLVALCTRTFKTRVIIFVRSKKLAHQLRIVFGLVGLK 452
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
L+ +L Q RL+ L++F G DYL+ATD
Sbjct: 453 CGELHGDLSQEQRLNALQQFRDGTVDYLMATD---------------------------- 484
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
L S RG+D K V TVIN++MP A Y+HR+GRT RA G SV+LV + K+ +
Sbjct: 485 LAS-----RGLDIKGVETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEGDRKMLK 539
Query: 311 -EIKSFVGDDE 320
IK G D+
Sbjct: 540 AAIKHSTGQDQ 550
>gi|58266632|ref|XP_570472.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110998|ref|XP_775963.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818015|sp|P0CQ93.1|DRS1_CRYNB RecName: Full=ATP-dependent RNA helicase DRS1
gi|338818016|sp|P0CQ92.1|DRS1_CRYNJ RecName: Full=ATP-dependent RNA helicase DRS1
gi|50258629|gb|EAL21316.1| hypothetical protein CNBD3700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226705|gb|AAW43165.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 808
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 149/304 (49%), Gaps = 43/304 (14%)
Query: 8 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKIL 66
KG + ++ L + + L PDI+IATPG + L+ + SF+ +L +L
Sbjct: 321 KGGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLTN----TPSFTLSALDVL 376
Query: 67 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 126
V+DEAD +L G+ D+L+ + PR Q +L SAT + VD+L KL L P + +
Sbjct: 377 VIDEADRMLEAGFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFV--- 433
Query: 127 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 186
D K Q+F S+ + +L L K +++K +IF + +A ++++
Sbjct: 434 -DPKRNTARGLTQEFVRIRSDDSRSPSLLALCK-RTIREKCIIFFRSKALAHQMRIVFGL 491
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
FG+K+A L+ L Q RL L +F AG DYL+ATD
Sbjct: 492 FGLKAAELHGNLTQEQRLQALNDFKAGTVDYLLATD------------------------ 527
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
L S RG+D K V TVIN++MP A Y HR+GRT RA G SVSLV +
Sbjct: 528 ----LAS-----RGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSVSLVGEADR 578
Query: 307 KIFE 310
K+ +
Sbjct: 579 KMLK 582
>gi|392578431|gb|EIW71559.1| hypothetical protein TREMEDRAFT_27480 [Tremella mesenterica DSM
1558]
Length = 786
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 141/279 (50%), Gaps = 43/279 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDI+IATPG + L+ + SF+ +L +LV+DEAD +L G+ D+L + PRG
Sbjct: 332 PDILIATPGRLIDHLT----NTPSFTLSALDVLVIDEADRMLEAGFTDELNEIVRSCPRG 387
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLY 153
Q +L SAT + VD+L KL L P L + D K Q+F S+ +
Sbjct: 388 RQTMLFSATMTDSVDELVKLSLDKPIRLFV----DPKRNTAIGLTQEFVRIKSDDTRSPS 443
Query: 154 ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+L L K V+++ +IF + +A ++++ G+K+A L+ L Q RLH LEEF G
Sbjct: 444 LLALCK-RTVRERCIIFFRSKALAHQMRVVFGLCGLKAAELHGNLSQEQRLHALEEFKLG 502
Query: 214 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 273
DYL+ATD L S RG+D K V TVIN++
Sbjct: 503 KVDYLLATD----------------------------LAS-----RGLDIKGVETVINYD 529
Query: 274 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
MP A Y HR+GRT RA G S++LV + K+ + +
Sbjct: 530 MPGQLAQYTHRVGRTARAGRKGRSITLVGEADRKLLKAV 568
>gi|157869983|ref|XP_001683542.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|68126608|emb|CAJ04058.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 605
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 123/469 (26%), Positives = 210/469 (44%), Gaps = 62/469 (13%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
IVI T + K S G + + + +++ VLDEAD++ S E L+ + +++P Q
Sbjct: 137 IVITTAALLAKGCSQGTVTADTLQH-VRLFVLDEADVVASMA-ERSLRTVQSLLPPSMQV 194
Query: 97 LLMSATSSSDVDKLKKLILHNPY--ILTLPEV-----GDVKDEV---------------- 133
+L SAT + V +K +L +P +LT +V GDV+D
Sbjct: 195 ILASATLTKGVAAVKGQLLRHPVNVVLTSEDVEELVRGDVEDSAASQQGLVVESRVRVRD 254
Query: 134 -IPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ K + Q++ ++ E + L ++ L+ K LIF N + +RL+ FLE+ G+ +
Sbjct: 255 PLKKTLHQYYLVATDECHGHTLLFGLYRMALITGKTLIFVNDDEQTYRLQNFLEQLGVAT 314
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDT--------QTKEKDQSDEGGH------ 237
+A LP N RL L F +G+ L+ TD T + E+ Q E G
Sbjct: 315 LAYDANLPINVRLDTLRRFQSGMVSTLVCTDGTLESAMQLQASLEEPQPGEKGSDGQLWS 374
Query: 238 ----VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIGRT 288
R + +A ++ + RGIDF +V V+ F+ P + Y HRIGR
Sbjct: 375 SSSRRRPRSASVRGRANTEAPSALHRGIDFAHVRNVVLFDGVEATDPIALSRYTHRIGRA 434
Query: 289 GRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 347
GRA G S+++ + P K ++ + E ++I PF + + V L+YR +
Sbjct: 435 GRAGEEGVSIAIFTVPQARKYLRPLQEYC----RERGDVIRPFRQMQRAEVAKLQYRVDS 490
Query: 348 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK--PPASHLR 405
V ++T+ + R+ R + E+ S L H + KD D L+ S K ++
Sbjct: 491 VLGNITRASTRKMRVASVAAELSRSSYLANHL--SQKDTDALQRVMRRSSKRIRVERNIL 548
Query: 406 DVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
+VP+Y+ + + K +A N R+ + +DPLK+
Sbjct: 549 EVPEYMHLSTADDVGAYRKRVQAKQTQSNRLRKATQK---ASADPLKAV 594
>gi|409051554|gb|EKM61030.1| hypothetical protein PHACADRAFT_24252 [Phanerochaete carnosa
HHB-10118-sp]
Length = 793
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 148/294 (50%), Gaps = 44/294 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL PDI+IATPG L + + +F+ D+L ILVLDEAD +LS G++D+L +
Sbjct: 313 ALRTRPDIIIATPGR----LIDHIRNTPTFTLDTLDILVLDEADRMLSEGFQDELAEIIK 368
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSE 147
P Q +L SAT + VD+L ++ L+ P L + D K +Q+F + S+
Sbjct: 369 SCPVSRQTMLFSATMTDSVDELVRMSLNQPVRLFV----DPKRTTARGLLQEFVRVRASK 424
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
D+ +L L + LIF + +A ++++ G+K++ L+ +L Q RL L
Sbjct: 425 EDERSALLVSLCKRTFKGGVLIFFRSKKLAHQMRIVFGLLGMKASELHGDLTQEQRLQAL 484
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+ F G DYL+ATD L S RG+D K +
Sbjct: 485 QAFREGSVDYLMATD----------------------------LAS-----RGLDIKGID 511
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDE 320
TVIN++MP A Y+HR+GRT RA G SV+LV + KI + IK G+D+
Sbjct: 512 TVINYDMPGQVAQYLHRVGRTARAGKKGRSVTLVGEADRKILKAAIKHASGEDQ 565
>gi|449551073|gb|EMD42037.1| hypothetical protein CERSUDRAFT_129370 [Ceriporiopsis subvermispora
B]
Length = 794
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 182/384 (47%), Gaps = 81/384 (21%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
A+L PD+VIATPG + L S +F+ ++L ILVLDEAD +L G+ D+L +
Sbjct: 326 ASLRTRPDVVIATPGRLIDHLRN----SPTFTLEALDILVLDEADRMLEDGFSDELTEII 381
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCS 146
P Q +L SAT + VD+L ++ L+ P L + D K VQ+F +
Sbjct: 382 KSCPTSRQTMLFSATMTDTVDELVRMSLNKPVRLFV----DPKRTTARGLVQEFVRVRAG 437
Query: 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
+ + +L L + K++IF + +A ++++ G+KS L+ +L Q RL
Sbjct: 438 KEAERSALLAALCKRTFRTKSIIFFRSKKLAHQMRIVFSLLGMKSDELHGDLSQEQRLKA 497
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L++F G DYL+ATD L S RG+D K +
Sbjct: 498 LQQFRDGTVDYLMATD----------------------------LAS-----RGLDIKGI 524
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDENEDSN 325
TVIN++MP A Y+HR+GRT RA G SV+LV + K+ + IK G+D+
Sbjct: 525 ETVINYDMPGQLALYLHRVGRTARAGKKGRSVTLVGEADRKMLKAAIKHAAGEDQ----- 579
Query: 326 IIAPFPLLAQNAVESLRYR---AEDVAKSVTKIAVRESRAQDLRN---EILNSEKLKAHF 379
+R+R AE +AK K+A L+N EIL EK + F
Sbjct: 580 ---------------VRHRQVPAEAIAKWSEKLA-------SLKNEISEILQEEKEEKQF 617
Query: 380 EVNPKDL----DLLKHDKDLSKKP 399
+L +L++H++++ KP
Sbjct: 618 RQAEMELKKGQNLIEHEEEIYSKP 641
>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
Length = 827
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 60/368 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 431 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 486
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VDKL ++ L+ P L + D K VQ+F + DK L
Sbjct: 487 RQTMLFSATMTDTVDKLIRVGLNRPVRLMV----DAKKNTAVTLVQEFVRLRPGREDKRL 542
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L E+ + ++F A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 543 GYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFRE 602
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD L S RG+D K V TVIN+
Sbjct: 603 GKAAFLLATD----------------------------LAS-----RGLDIKGVETVINY 629
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
E PQ+ Y+HR+GRT RA +G + ++ + PD + +K+ S +I P
Sbjct: 630 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEP-- 687
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
+S +AE++A V ++ L E L + +A +V K +L+KH
Sbjct: 688 ----AVADSWAAKAEELADEVEEV---------LSEEKLEKQLAQAEMQVT-KGENLIKH 733
Query: 392 DKDLSKKP 399
+ ++ +P
Sbjct: 734 EAEIKSRP 741
>gi|392597372|gb|EIW86694.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 750
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 180/384 (46%), Gaps = 81/384 (21%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PD+VIATPG L + S SF+ D+L ILVLDEAD +LS G+ D+L +
Sbjct: 296 AALRTRPDVVIATPGR----LVDHIHNSPSFNLDALDILVLDEADRMLSEGFADELSEII 351
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
P+ Q +L SAT + VD+L K+ L+ P L + D + VQ+F +E
Sbjct: 352 KACPKSRQTMLFSATMTDSVDELVKMSLNKPVRLFV----DPRRTTARGLVQEFVRVRAE 407
Query: 148 RD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
++ + +L L ++F + +A ++++ +K L+ +L Q RL
Sbjct: 408 KETERSSLLVALCQRTFTSGVIVFFRSKKLAHQMRIIFRMLDMKCEELHGDLTQEQRLQA 467
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L+ F G ++L+ATD L S RG+D K +
Sbjct: 468 LQLFRDGQVNFLMATD----------------------------LAS-----RGLDIKGI 494
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 326
TVIN++MP AA Y+HR+GRT RA TG S++LV + K+ + + EN
Sbjct: 495 ETVINYDMPNQAAQYLHRVGRTARAGKTGRSLTLVGEADRKMLKSVIKHSASGEN----- 549
Query: 327 IAPFPLLAQNAVESLRYR---AEDVAKSVTKIAVRESRAQDLRNEI---LNSEK-----L 375
+R+R AE VAK +IA DL++EI L EK
Sbjct: 550 --------------IRHRVVPAESVAKWSKRIA-------DLKDEISMVLQEEKEEKQIR 588
Query: 376 KAHFEVNPKDLDLLKHDKDLSKKP 399
+A E+ K +++ H+K++ +P
Sbjct: 589 QAEMELK-KGKNMIDHEKEIFSRP 611
>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 815
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 180/386 (46%), Gaps = 60/386 (15%)
Query: 17 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 75
QL + L PD++IATPG + S SF+ D+L+ILVLDEAD +L
Sbjct: 408 QLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRN----SPSFTVDTLEILVLDEADRML 463
Query: 76 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 135
G+ D+L + IP+ Q +L SAT + +DKL ++ ++ P L + D K +
Sbjct: 464 EDGFADELNEILTTIPKSRQTMLFSATMTDSIDKLIRVGMNRPVRLMV----DSKKNTVS 519
Query: 136 KNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 193
VQ+F E +L Y+L L K E+ K+ +IF A R+++ G+K+A
Sbjct: 520 TLVQEFVRLRPGREDKRLGYLLHLCK-EIYSKRVIIFFRQKKEAHRVRIIFSLLGLKAAE 578
Query: 194 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 253
L+ L Q R+ +E F G +L+ATD
Sbjct: 579 LHGSLSQEQRIKSVENFRDGKVAFLLATDVAS---------------------------- 610
Query: 254 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + + KI +K
Sbjct: 611 -----RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKI---VK 662
Query: 314 SFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 373
V + + + I + ++ Q +S +AE++A V +I L+ E +
Sbjct: 663 LAVRAGKAQGAKIAS--RVIEQAVADSWAQKAEEMADEVAEI---------LQEEKTEKQ 711
Query: 374 KLKAHFEVNPKDLDLLKHDKDLSKKP 399
+A + K +L+KH ++ +P
Sbjct: 712 LSQAEMQFT-KGENLMKHGAEIMSRP 736
>gi|350638693|gb|EHA27049.1| hypothetical protein ASPNIDRAFT_130294 [Aspergillus niger ATCC
1015]
Length = 793
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 172/368 (46%), Gaps = 60/368 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 404 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 459
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VDKL ++ L+ P L + D K VQ+F + DK L
Sbjct: 460 RQTMLFSATMTDTVDKLIRVGLNRPVRLMV----DAKKNTAVTLVQEFVRLRPGREDKRL 515
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L E+ + ++F A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 516 GYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFRE 575
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD L S RG+D K V TVIN+
Sbjct: 576 GKAAFLLATD----------------------------LAS-----RGLDIKGVETVINY 602
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
E PQ+ Y+HR+GRT RA +G + ++ + PD + +K+ S +I P
Sbjct: 603 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEP-- 660
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
+S +AE++A V ++ L E L + +A +V K +L+KH
Sbjct: 661 ----AVADSWAAKAEELADEVEEV---------LSEEKLEKQLAQAEMQVT-KGENLIKH 706
Query: 392 DKDLSKKP 399
+ ++ +P
Sbjct: 707 EAEIKSRP 714
>gi|312375532|gb|EFR22889.1| hypothetical protein AND_14048 [Anopheles darlingi]
Length = 237
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 118/202 (58%), Gaps = 6/202 (2%)
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
++E V RGIDF+ V V+NF+ P + Y+HR GRT R N G+ +S VS DE++ E
Sbjct: 27 EAESSVSRGIDFQCVSCVVNFDFPSDINSYIHRAGRTARGKNNGSVLSFVSIDELERKRE 86
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
++ F+ +D + F + VE+ RYRA+D +++TK+++RE+R ++L+ E+ N
Sbjct: 87 VEEFLQGLAGDDGFTMKDFQF-NFDEVEAFRYRAKDAWRAITKLSIREARIKELKAEMFN 145
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
SEKLK+ FE NP+DL L+HD+ L HL DVP+YL+ + +V
Sbjct: 146 SEKLKSFFEENPRDLQTLRHDRTLHTVHVQEHLGDVPEYLVPPSLR---SIVAFNNTKRH 202
Query: 432 NKNSSRRQGP--RRKFRKSDPL 451
K+S +R G +R + +PL
Sbjct: 203 KKSSDKRHGKANKRASKAENPL 224
>gi|407425375|gb|EKF39383.1| ATP-dependent RNA helicase, putative, partial [Trypanosoma cruzi
marinkellei]
Length = 599
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 221/457 (48%), Gaps = 46/457 (10%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+A LA P I++ T + K +G + ++ + +L+ +V+DE D ++S E L+A+
Sbjct: 139 KARLAAAP-ILVTTAALLGKHCRSGTVTAEDLA-TLRCVVIDEVDFVISIA-EGSLRAVQ 195
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP---------KNV 138
+++P Q +L SAT + V +K +LHNP +TL GD +DE+ P +
Sbjct: 196 SILPPSVQTILSSATLTDGVVHIKSQLLHNPVTITL-STGD-EDEMTPPEGENIVVESRI 253
Query: 139 QQFWISCSERDKLLYILT------------LLKLELVQKKALIFTNTIDMAFRLKLFLEK 186
+ I+ ER + Y++ L +L ++ K LIF N + ++++ FL +
Sbjct: 254 TKKGITSEERLRHYYLVATDECHNHTLLYALYRLGHIKGKTLIFVNEEETTYKVQSFLAQ 313
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
G+++ + ++ LP N R+ L F G L+ TD T + + V+++ ++ +
Sbjct: 314 LGVEALVYDSNLPLNVRVDTLHRFQVGSVGTLVCTDGTLESFDNLQESTPGVEAQATRTY 373
Query: 247 PKAKLDSEFG----VVRGIDFKNVHTVINFE---MPQNAA--GYVHRIGRTGRAYNTGAS 297
K +E G + RGIDF +V VI F+ P +A Y HR+GR GRA G +
Sbjct: 374 SKKGKRTEDGHDGALQRGIDFSDVRNVILFDGIAHPTTSAFSRYTHRVGRAGRAGKGGMA 433
Query: 298 VSLVSPDE-MKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIA 356
++L + + ++ ++ +G + PF L + L+YR ++V ++T+ +
Sbjct: 434 ITLFTLQQAQRVTRHLRRHLGATH----DTFEPFKQLRRQEAAKLQYRVDNVLFTITRSS 489
Query: 357 VRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPA--SHLRDVPDYLLDA 414
R R + E+ S LK+H + KD +L+ SKK + L DVP Y+
Sbjct: 490 TRRQRISSVAAELTRSAYLKSHM--SQKDESVLQRILSRSKKTTKCDTTLLDVPHYMHIE 547
Query: 415 KTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPL 451
A K RA +K+SS Q PR K R DPL
Sbjct: 548 GADSAENYRKRVRARTSSKSSSSSQQPRTKSR--DPL 582
>gi|401422698|ref|XP_003875836.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492076|emb|CBZ27350.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 605
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/469 (26%), Positives = 208/469 (44%), Gaps = 62/469 (13%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
IVI T + K S G + + + ++ VLDEAD++ S E L+ + +++P Q
Sbjct: 137 IVITTAALLAKGCSQGTVTADTL-QHVRFFVLDEADVVASMA-ERSLRTVQSLLPPNMQV 194
Query: 97 LLMSATSSSDVDKLKKLILHNPY--ILTLPEV-----GDVKDEV---------------- 133
+L SAT + V +K +L +P +LT +V D KD
Sbjct: 195 ILASATLTKGVAAVKGQLLRHPVNVVLTSEDVEELVRSDGKDNAASQQGPVVESRVRVRD 254
Query: 134 -IPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ K + Q++ ++ E + L ++ L+ K LIF N + +RL+ FLE+ G+ +
Sbjct: 255 PLKKTLHQYYLVATDECHSHTLLFGLYRMALITGKTLIFVNDDEQTYRLQNFLEQLGVAT 314
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDT--------------QTKEKDQSDEGGH 237
+A LP N RL L F G+ L+ TD T Q EK + G
Sbjct: 315 LAYDANLPINVRLDTLRRFQTGMASTLVCTDGTLENAMQLQASLEESQPGEKGSDGQSGS 374
Query: 238 VDSRKSKKHP----KAKLDSEFGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIGRT 288
SR+ + +A ++ + RGIDF +V V+ F+ P + Y HRIGR
Sbjct: 375 PSSRRRPRSASVCGRANTEAPSALHRGIDFAHVRNVVLFDGVEATDPIALSRYTHRIGRA 434
Query: 289 GRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAED 347
GRA G S+++ + P K ++ + E ++I PF + + V L+YR +
Sbjct: 435 GRAGEEGVSIAIFTVPQARKYLRPLQEYC----TERGDVIRPFRQMQRAEVAKLQYRVDS 490
Query: 348 VAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK--PPASHLR 405
V ++T+ + R+ R + E+ S L H + KD D L+ S K ++
Sbjct: 491 VLGNITRTSTRKMRVASVAAELSRSSYLANHL--SQKDTDALQRVMRRSSKRIRVERNIL 548
Query: 406 DVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
+VP+Y+ + ++ + +A N R+ + +DPLK+
Sbjct: 549 EVPEYMHLSTAEDVGAYQRRVQAKQTQSNRLRKATQK---ASADPLKAV 594
>gi|327352045|gb|EGE80902.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 834
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 138/276 (50%), Gaps = 43/276 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 433 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 488
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +++VDKL ++ L+ P L + D K + + VQ+F + DK L
Sbjct: 489 RQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAKKQTVGTLVQEFVRLRPGREDKRL 544
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L +L + + + +IF A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 545 GYLMVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRD 604
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD RG+D K V TVIN+
Sbjct: 605 GKVSFLLATDVAS---------------------------------RGLDIKGVETVINY 631
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
E PQ+ Y+HR+GRT RA +G + +L + + K+
Sbjct: 632 EAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 667
>gi|239612877|gb|EEQ89864.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ER-3]
Length = 834
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 138/276 (50%), Gaps = 43/276 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 433 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 488
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +++VDKL ++ L+ P L + D K + + VQ+F + DK L
Sbjct: 489 RQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAKKQTVGTLVQEFVRLRPGREDKRL 544
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L +L + + + +IF A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 545 GYLMVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRD 604
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD RG+D K V TVIN+
Sbjct: 605 GKVSFLLATDVAS---------------------------------RGLDIKGVETVINY 631
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
E PQ+ Y+HR+GRT RA +G + +L + + K+
Sbjct: 632 EAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 667
>gi|154338133|ref|XP_001565291.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062340|emb|CAM42199.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 606
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/470 (25%), Positives = 207/470 (44%), Gaps = 63/470 (13%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
I+I+T + K S G + + + ++ VLDEAD++ S E L+ + +++P Q
Sbjct: 137 IIISTAALLGKGCSHGTVTADTLKH-VRFFVLDEADVVASMA-ERSLRTVQSLLPPNMQV 194
Query: 97 LLMSATSSSDVDKLKKLILHNPY--ILTLPEV-----GDVKDEV---------------- 133
+L SAT + V +K +L +P +LT +V GD+KD
Sbjct: 195 ILASATLTKGVAAVKGQLLRHPVNVVLTSEDVEELVPGDIKDSAASQQGPVVESRVTVRD 254
Query: 134 -IPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ K + Q++ ++ E + L ++ L+ K LIF N + +RL+ FLE+ G+ +
Sbjct: 255 PLKKTLHQYYLVATDECHSHTLLFGLYRMALITGKTLIFVNDDEQTYRLQNFLEQLGVAT 314
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEK------DQSDEGGHVDS----- 240
+A LP N R L F +G L+ TD T K ++ GG +
Sbjct: 315 LAYDANLPVNVRFDTLRRFQSGAVSTLVCTDGTLEKAMQLQMSLEEPQPGGRASTGKLAA 374
Query: 241 ---RKSKKHPK-----AKLDSEFGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIGR 287
R+S+ P A ++ + RGIDF +V VI F+ P + Y HRIGR
Sbjct: 375 SSRRRSRPTPACGGGLANDEAPSALHRGIDFTHVRNVILFDGVEATDPIALSRYTHRIGR 434
Query: 288 TGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAE 346
GRA G S+++ + P K ++ + + I PF + + V L+YR +
Sbjct: 435 AGRAGEEGVSIAIFTVPKARKYLRPLQEYC----RGRGDAIQPFRQMQRAEVAKLQYRVD 490
Query: 347 DVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK--PPASHL 404
V ++T+ + R+ R + E+ S L + + KD D L+ S K ++
Sbjct: 491 SVLGNITRTSTRKMRVASVAAELSRSSYLSNYL--SQKDTDALQRVMQRSSKRVRVERNI 548
Query: 405 RDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
+VP+Y+ + K RA+ N R + +DPLK+
Sbjct: 549 LEVPEYMHLPTADDVATYRKRVRASQTQSNRLRNATHK---ATADPLKAV 595
>gi|425770601|gb|EKV09069.1| hypothetical protein PDIP_65800 [Penicillium digitatum Pd1]
gi|425772047|gb|EKV10473.1| hypothetical protein PDIG_56240 [Penicillium digitatum PHI26]
Length = 1500
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 129/488 (26%), Positives = 210/488 (43%), Gaps = 79/488 (16%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ QL + L PD++IATPG + S SF+ D+L+ILVLD
Sbjct: 384 THVTFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRN----SPSFTVDTLEILVLD 439
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD +L G+ D+L + IP+ Q +L SAT + +DKL ++ ++ P L + D
Sbjct: 440 EADRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSIDKLIRVGMNRPMRLMV----DA 495
Query: 130 KDEVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
K + +Q+F E +L Y+L L K E K+ +IF A R+++
Sbjct: 496 KKNTVSTLIQEFVRLRPGREDKRLGYLLHLCK-EAYTKRVIIFFRQKKEAHRVRIIFGLL 554
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 247
G+K+A L+ L Q R+ +E F G +L+ATD
Sbjct: 555 GLKAAELHGSLSQEQRIKSVENFRDGKVAFLLATDVAS---------------------- 592
Query: 248 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
RG+D K V TVIN+E PQ+ Y+HR+GRT RA +G + ++ + + K
Sbjct: 593 -----------RGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRK 641
Query: 308 IFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN 367
I +K V + + + I++ ++ Q +S +AED+A V
Sbjct: 642 I---VKLAVRAGKAQGAKIVS--RVVEQAVADSWAQKAEDMADEVA-------------- 682
Query: 368 EILNSEKLKAHFEVN----PKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMV 423
E+L EK + F K +L+KH ++ +P + D + A K+
Sbjct: 683 EVLQEEKTEKQFSQAEMQFTKGENLMKHGNEIMSRPKRTWFETEKD------KKVARKLG 736
Query: 424 KLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSAEPTKRAGKG-----RMKREGRNGDDTG 478
+ K S+ + + K R D + GKG + ++G+ D T
Sbjct: 737 AVELNGPNTKKSNVKLSNKDKKRLDDAQMRHDGNIGWKKGKGDAESAKNPKKGKVADTTS 796
Query: 479 KHKKKKSL 486
HK+ +L
Sbjct: 797 THKRAPTL 804
>gi|321257748|ref|XP_003193695.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317460165|gb|ADV21908.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 790
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 147/303 (48%), Gaps = 43/303 (14%)
Query: 8 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKIL 66
KG + ++ L + + L PDI+IATPG + L+ + SF+ +L +L
Sbjct: 303 KGGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLT----NTPSFTLSALDVL 358
Query: 67 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 126
V+DEAD +L G+ D+L+ + PR Q +L SAT + VD+L KL L P + +
Sbjct: 359 VIDEADRMLEAGFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFV--- 415
Query: 127 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 186
D K Q+F S+ + +L L K +++K +IF + +A ++++
Sbjct: 416 -DPKRNTAKGLTQEFVRIRSDDSRSPSLLALCK-RTIREKCIIFFRSKALAHQMRIVFGL 473
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
FG+K+A L+ L Q RL L +F A DYL+ATD
Sbjct: 474 FGLKAAELHGNLTQEQRLQALNDFKASTVDYLLATD------------------------ 509
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
L S RG+D K V TVIN++MP A Y HR+GRT RA G S+SLV +
Sbjct: 510 ----LAS-----RGLDIKGVETVINYDMPGQLAQYTHRVGRTARAGRKGRSISLVGEADR 560
Query: 307 KIF 309
K+
Sbjct: 561 KML 563
>gi|261189897|ref|XP_002621359.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
gi|239591595|gb|EEQ74176.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis SLH14081]
Length = 834
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 138/276 (50%), Gaps = 43/276 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 433 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 488
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +++VDKL ++ L+ P L + D K + + VQ+F + DK L
Sbjct: 489 RQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAKKQTVGTLVQEFVRLRPGREDKRL 544
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L +L + + + +IF A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 545 GYLMVLCKTIYKDRVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRD 604
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD RG+D K V TVIN+
Sbjct: 605 GKVSFLLATDVAS---------------------------------RGLDIKGVETVINY 631
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
E PQ+ Y+HR+GRT RA +G + +L + + K+
Sbjct: 632 EAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV 667
>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
Length = 453
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 141/281 (50%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + ++ F D L++LVLDEAD +L G+ D++ + ++P+ Q
Sbjct: 125 DVIVATPGRLLDLYNQNAVR---FQD-LEVLVLDEADRMLDMGFIHDIRKILDILPKRRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT S+D+ KL K +++NP E+ K V+Q WI ++ + +L
Sbjct: 181 NLMFSATFSNDIRKLAKELVNNPV-----EISVSPPNTTAKTVKQ-WIHPVDKKQKSALL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
T L + +AL+F+ T A RL L GI +A ++ + QN+R L +F G
Sbjct: 235 TQLIRDNNWDQALVFSRTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NF++P
Sbjct: 295 QILVATDIA---------------------------------ARGIDIDQLPQVVNFDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
Q A YVHRIGRTGRA G +VSLVS DE K+ +I+ +
Sbjct: 322 QVAEDYVHRIGRTGRAGAEGQAVSLVSADEFKLLADIERLI 362
>gi|398015851|ref|XP_003861114.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|322499339|emb|CBZ34412.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 605
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 122/471 (25%), Positives = 208/471 (44%), Gaps = 66/471 (14%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
IVI T + K S G + + +F ++ VLDEAD++ S E L+ + +++P Q
Sbjct: 137 IVITTAALLAKGCSQGTVTADTFQH-VRFFVLDEADVVASMA-ERSLRTVQSLLPPSMQV 194
Query: 97 LLMSATSSSDVDKLKKLILHNPY--ILTLPEV-----GDVKDEV---------------- 133
+L SAT + V +K +L +P +LT +V GDV+D
Sbjct: 195 ILASATLTKGVAAVKGQLLRHPVNVVLTSEDVEELARGDVEDSAASPQGPVVESRVRVRD 254
Query: 134 -IPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ K + Q++ ++ E + L ++ L+ K LIF N + +RL+ FLE+ G+ +
Sbjct: 255 PLKKTLHQYYLVATDECHSHTLLFGLYRMALITGKTLIFVNDDEQTYRLQNFLEQLGVAT 314
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK------ 245
+A LP N RL L F +G L+ TD T E + + R +K
Sbjct: 315 LAYDANLPINVRLDTLRRFQSGTVSTLVCTDG--TLESAMQLQASLEELRPGEKGSDGQS 372
Query: 246 --------------HPKAKLDSEFGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIG 286
+A ++ + RGIDF +V V+ F+ P + Y+HRIG
Sbjct: 373 GSSSSRRRSRSASVCSRANTEAPSALHRGIDFAHVRNVVLFDGVEATDPIALSRYIHRIG 432
Query: 287 RTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRA 345
R GRA G S+++ + P K ++ + E ++I PF + + V L+YR
Sbjct: 433 RAGRAGEEGVSIAIFTVPQARKYLRPLQEYC----TERGDVIRPFRQMQRAEVAKLQYRV 488
Query: 346 EDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK--PPASH 403
+ V ++T+ + R+ R + E+ S L H + KD D L+ S K +
Sbjct: 489 DSVLGNITRASTRKMRVASVAAELSRSSYLANHL--SQKDTDALQRVMRRSSKRIRVERN 546
Query: 404 LRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
+ +VP+Y+ + + K +A N R+ + +DPLK+
Sbjct: 547 ILEVPEYMHLSTADDVGAYRKRVQAKQTQSNRLRKATQK---ASADPLKAV 594
>gi|339898318|ref|XP_003392537.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|321399509|emb|CBZ08705.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
Length = 605
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 122/471 (25%), Positives = 208/471 (44%), Gaps = 66/471 (14%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
IVI T + K S G + + +F ++ VLDEAD++ S E L+ + +++P Q
Sbjct: 137 IVITTAALLAKGCSQGTVTADTFQH-VRFFVLDEADVVASMA-ERSLRTVQSLLPPSMQV 194
Query: 97 LLMSATSSSDVDKLKKLILHNPY--ILTLPEV-----GDVKDEV---------------- 133
+L SAT + V +K +L +P +LT +V GDV+D
Sbjct: 195 ILASATLTKGVAAVKGQLLRHPVNVVLTSEDVEELARGDVEDSAASPQGPVVESRVRVRD 254
Query: 134 -IPKNVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ K + Q++ ++ E + L ++ L+ K LIF N + +RL+ FLE+ G+ +
Sbjct: 255 PLKKTLHQYYLVATDECHSHTLLFGLYRMALITGKTLIFVNDDEQTYRLQNFLEQLGVAT 314
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK------ 245
+A LP N RL L F +G+ L+ TD T E + + R +K
Sbjct: 315 LAYDANLPINVRLDTLRRFQSGMVSTLVCTDG--TLESAMQLQASLEELRPGEKGSDGQS 372
Query: 246 --------------HPKAKLDSEFGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIG 286
+A ++ + RGIDF +V V+ F+ P + Y+HRIG
Sbjct: 373 GSSSSRRRSRSASVCSRANTEAPSALHRGIDFAHVRNVVLFDGVEATDPIALSRYIHRIG 432
Query: 287 RTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRA 345
R GRA G S+++ + P K ++ + E + I PF + + V L+YR
Sbjct: 433 RAGRAGEEGVSIAIFTVPQARKYLRPLQEYC----TERGDAIRPFRQMQRAEVAKLQYRV 488
Query: 346 EDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKK--PPASH 403
+ V ++T+ + R+ R + E+ S L H + KD D L+ S K +
Sbjct: 489 DSVLGNITRASTRKMRVASVAAELSRSSYLANHL--SQKDTDALQRVMRRSSKRIRVERN 546
Query: 404 LRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSF 454
+ +VP+Y+ + + K +A N R+ + +DPLK+
Sbjct: 547 ILEVPEYMHLSTADDVGAYRKRVQAKQTQSNRLRKATQK---ASADPLKAV 594
>gi|336372365|gb|EGO00704.1| hypothetical protein SERLA73DRAFT_105076 [Serpula lacrymans var.
lacrymans S7.3]
Length = 681
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 180/393 (45%), Gaps = 59/393 (15%)
Query: 9 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 67
G ++ + + AAL PD++IATPG + L S SF+ D+L ILV
Sbjct: 284 GHTDVRFCLVVGGLSLKSQEAALRSRPDVLIATPGRLIDHLHN----SPSFTLDALDILV 339
Query: 68 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 127
LDEAD +L G+ D+L + P Q +L SAT + VDKL +L L P + +
Sbjct: 340 LDEADRMLEDGFADELTEIVKACPVSRQTMLFSATMTDSVDKLIRLSLTKPVRIFV---- 395
Query: 128 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQK-KALIFTNTIDMAFRLKLFLEK 186
D K + VQ+F E++K L L + K + ++F + +A ++++
Sbjct: 396 DAKRSMAKGLVQEFVRVRPEKEKERPALLLCICKRTFKTRVIVFFRSKKLAHQMRIVFGL 455
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
+K L+ +L Q RL L+ F G DYL+ATD
Sbjct: 456 LDMKCDELHGDLSQEQRLKALQAFRDGSVDYLMATD------------------------ 491
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
L S RG+D K + TVINF+MP A Y+HR+GRT RA TG SV+ V +
Sbjct: 492 ----LAS-----RGLDIKGIETVINFDMPSQLAQYLHRVGRTARAGKTGRSVTFVGEADR 542
Query: 307 KIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
K+ +++ V EDS ++ + V + E V + V+ I E + LR
Sbjct: 543 KM---LRAVVKHSAGEDS---VRHRVVPADVVSKWAQKFEQVKEEVSVILKEEKEEKQLR 596
Query: 367 NEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 399
+A E+ K ++++H+K++ +P
Sbjct: 597 ---------QAEMELK-KGQNMIEHEKEIYSRP 619
>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
AFUA_1G14990) [Aspergillus nidulans FGSC A4]
Length = 814
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 184/386 (47%), Gaps = 60/386 (15%)
Query: 17 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 75
QL + L PD++IATPG + S SF+ D+L+ILVLDEAD +L
Sbjct: 402 QLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRML 457
Query: 76 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 135
G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 458 EDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DTKKNTAV 513
Query: 136 KNVQQF-WISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 193
VQ+F + DK L Y+L L K E+ + ++F A R+++ G+K+A
Sbjct: 514 TLVQEFVRLRPGREDKRLGYLLHLCK-EVYTGRVIVFFRQKKEAHRVRIVFGLLGLKAAE 572
Query: 194 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 253
L+ + Q R+ +E F G ++L+ATD L S
Sbjct: 573 LHGSMSQEQRIKSVESFRDGNVNFLLATD----------------------------LAS 604
Query: 254 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D K V TVIN+E PQ+ YVHR+GRT RA +G + ++ + + K+ +K
Sbjct: 605 -----RGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKV---VK 656
Query: 314 SFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 373
+ V + + + I++ ++ + + +A+D+ + + + L E L +
Sbjct: 657 AAVKAGKAQGAKIVS--RVVDPSVADDWASKAKDMEEEIDAV---------LEEEKLEKQ 705
Query: 374 KLKAHFEVNPKDLDLLKHDKDLSKKP 399
+A +V K +L+KH+ ++ +P
Sbjct: 706 LAQAEMQVT-KGENLIKHEAEIKSRP 730
>gi|340372235|ref|XP_003384650.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Amphimedon queenslandica]
Length = 598
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 175/383 (45%), Gaps = 67/383 (17%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
A+L PDIVIATPG + L + SFS +++ILVLDEAD +L + D + +
Sbjct: 261 ASLRKSPDIVIATPGRLVDHLH----NTPSFSLQAIEILVLDEADRMLDEHFLDQMNEII 316
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI---S 144
+ P Q LL SAT + +V++L +L LHNP + + D D N+ Q ++ S
Sbjct: 317 RLCPVSRQTLLFSATMTDEVEELARLSLHNPVRVFVDSNTDTAD-----NLHQEFVRIRS 371
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
E D+ I++ L L + L+F T A R +L L GIK++ L+ L Q RL
Sbjct: 372 NKEADR-EAIVSALCLRSFKDHCLVFVPTKKQAHRQRLILGLLGIKTSELHGSLTQLQRL 430
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
L+ F D LIATD RG+D +
Sbjct: 431 EALKGFKEAEVDILIATD---------------------------------LAARGLDIE 457
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 324
NV TVIN+ MP Y+HR+GRT RA +G SV+LV K+ +EI V +
Sbjct: 458 NVRTVINYSMPPTVKQYIHRVGRTARAGKSGKSVTLVGEKGRKVLKEI---VKGAKCPPK 514
Query: 325 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQD-LRNEILNSEKLKAHFEVNP 383
N + P AE + K +KI+ ES +D L+ E + A EV
Sbjct: 515 NRVIP---------------AEVIEKYKSKISSLESEIRDILKQEEEEKQVRVAQMEVTK 559
Query: 384 KDLDLLKHDKDLSKKPPASHLRD 406
+ ++ HD ++ +PP +D
Sbjct: 560 ANNMIVHHD-EIHSRPPRVWFQD 581
>gi|423201022|ref|ZP_17187602.1| hypothetical protein HMPREF1167_01185 [Aeromonas veronii AER39]
gi|404618005|gb|EKB14926.1| hypothetical protein HMPREF1167_01185 [Aeromonas veronii AER39]
Length = 416
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 144/292 (49%), Gaps = 53/292 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL DI+IATPG + L G L DSL+ LV DEAD +L G+ D++KAL
Sbjct: 123 ALQAGVDILIATPGRLLDHLRQGALSL----DSLRHLVFDEADRMLDMGFMDEIKALLKQ 178
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWIS 144
IP Q LL SAT ++ L K++LH+P ++ EV P+N V+Q +
Sbjct: 179 IPADRQTLLFSATCDDNLFTLSKVLLHDPELI----------EVAPRNTTAAEVEQRVYT 228
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
KL + +LK++ ALIF+ T A +L L K GI + + +L Q++R
Sbjct: 229 VDSDRKLALVEHMLKVK-GWAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQSARE 287
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
+L EF AG L+ATD RG+D
Sbjct: 288 KVLLEFRAGTLQALVATDVA---------------------------------ARGLDIT 314
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 315 DLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|403415272|emb|CCM01972.1| predicted protein [Fibroporia radiculosa]
Length = 782
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 177/375 (47%), Gaps = 63/375 (16%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
A L PD+VIATPG + L S +F+ D+L ILVLDEAD +LS G+ D+L +
Sbjct: 311 ATLRTRPDVVIATPGRLIDHLRN----SPAFTLDALDILVLDEADRMLSDGFADELTEII 366
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISC 145
P Q +L SAT + VD+L ++ L P L + D K VQ+F +
Sbjct: 367 KSCPMSRQTMLFSATMTDSVDELVRMSLDKPVRLFV----DPKRSTASGLVQEFVRVRAG 422
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
E ++ ++TL K + +A+IF + +A ++++ +K+ L+ +L Q RL
Sbjct: 423 KESERSALLVTLCK-RTFKSRAIIFFRSKKLAHQMRIVFRLLDMKADELHGDLSQEQRLK 481
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
L++F G D+L+ATD L S RG+D K
Sbjct: 482 ALQQFRDGAVDFLMATD----------------------------LAS-----RGLDIKG 508
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDENEDS 324
+ TVIN++MP A Y+HR+GRT RA G SV+LV + K+ + IK + +D
Sbjct: 509 IETVINYDMPSQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKASIKHAMAEDSVRHR 568
Query: 325 NIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPK 384
I AV + +D+ K + ++ E + LR +A EV K
Sbjct: 569 QI-------PPEAVAKWSAKLDDMKKEIAEVLQEEKEEKQLR---------QAEMEVK-K 611
Query: 385 DLDLLKHDKDLSKKP 399
++++H+ ++ +P
Sbjct: 612 GQNMIEHEAEIFSRP 626
>gi|384493436|gb|EIE83927.1| hypothetical protein RO3G_08632 [Rhizopus delemar RA 99-880]
Length = 711
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 135/279 (48%), Gaps = 45/279 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD+V+ATPG L V + F D+ +ILV+DEAD +L G+ D+L + P+
Sbjct: 338 PDVVVATPGR----LIDHVRNTSGFHLDACEILVMDEADRMLEDGFADELGEIVKSCPKS 393
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT + +VD+L ++ LHNP L + D ++ + +Q+F E D+
Sbjct: 394 RQTMLFSATMTDNVDQLIRMSLHNPVRLFV----DRSNQAASRLIQEFVRIRQAREADRS 449
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+L L K + K +IF + A ++K+ G+ +A L+ L Q RL LE+F
Sbjct: 450 AVLLALCKKSF-KNKVIIFFRSKAAAHQMKILFGLMGLNAAELHGNLTQEQRLEALEQFR 508
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
DYL+ATD RG+D K + TVIN
Sbjct: 509 DNQVDYLLATD---------------------------------LAARGLDIKGIETVIN 535
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
+ MP A Y+HR+GRT RA G SV+LV + K+ +
Sbjct: 536 YNMPTQFAQYLHRVGRTARAGRNGRSVTLVGESDRKMLK 574
>gi|393240212|gb|EJD47739.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 778
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 183/393 (46%), Gaps = 70/393 (17%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD+VIATPG + L + F D++ ILVLDEAD +LS G+ D+L + PRG
Sbjct: 297 PDVVIATPGRLIDHLRN----APQFGLDAVDILVLDEADRMLSDGFADELAEIVQACPRG 352
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLY 153
Q +L SAT + VD+L K+ L+ P L + D K VQ+F E D+
Sbjct: 353 RQTMLFSATMTDSVDELVKMSLNKPVRLFV----DAKRTTARSLVQEFVRVRREEDRGGM 408
Query: 154 ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ L K + +A+IF + +A ++++ + + L+ +L Q RL L++F G
Sbjct: 409 LAALCK-RTFKARAIIFFRSKKLAHQMRVAFALLNLNAGELHGDLTQEQRLRSLQQFRDG 467
Query: 214 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 273
D+L+ATD L S RG+D K V VIN++
Sbjct: 468 QIDFLMATD----------------------------LAS-----RGLDIKGVEVVINYD 494
Query: 274 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLL 333
MP A Y+HR+GRT RA G SV+LV + K+ + + +D++ +
Sbjct: 495 MPGQLAQYLHRVGRTARAGARGRSVTLVGESDRKMLKAAIKHSANASKDDADKVD----- 549
Query: 334 AQNAVESLRYRA---EDVAKSVTKIAVRESRAQDLRNEILN------SEKLKAHFEVN-P 383
E++R+R + +AK +A DL++EI+ EK E+
Sbjct: 550 -----ETVRHRVVPPDALAKWTAALA-------DLKDEIVRVLAEEKEEKAIRQAEMQIK 597
Query: 384 KDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKT 416
K ++++H+K++ +P + + D A+T
Sbjct: 598 KGENMIEHEKEIFSRPARTWFQSEKDKAKSAET 630
>gi|353237187|emb|CCA69166.1| related to DRS1-RNA helicase of the DEAD box family [Piriformospora
indica DSM 11827]
Length = 767
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 148/301 (49%), Gaps = 45/301 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+Q+ +V S+ A + A L PD+VIATPG + L S +F+ D+L +LVLD
Sbjct: 278 IQMSLVVGGLSLKAQE--ATLRSKPDLVIATPGRLIDHLRN----SPTFNLDALDVLVLD 331
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD +LS G+ D+L+ + PR Q +L SAT + VD+L K+ L+ P L + D
Sbjct: 332 EADRMLSDGFADELEEIVKSCPRSRQTMLFSATMTDSVDELVKMSLNKPVRLFV----DP 387
Query: 130 KDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
K VQ+F + + IL L +++ +IF + +A ++++
Sbjct: 388 KRATAKGLVQEFVRVKAGRESERAAILVTLCKRTFRERVIIFFRSKKLAHQMRIMFGLLD 447
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
+++ L+ +L Q RL L+ F G DYL+ATD
Sbjct: 448 MRADELHGDLTQEQRLTSLQAFRDGKVDYLMATD-------------------------- 481
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
L S RG+D K + TVIN++MP A Y+HR+GRT RA G SV+LV + K+
Sbjct: 482 --LAS-----RGLDIKGIETVINYDMPGQLAQYLHRVGRTARAGKNGRSVTLVGEADRKM 534
Query: 309 F 309
Sbjct: 535 L 535
>gi|348667582|gb|EGZ07407.1| hypothetical protein PHYSODRAFT_527947 [Phytophthora sojae]
Length = 773
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 168/383 (43%), Gaps = 67/383 (17%)
Query: 22 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 80
+P A L PD+V+ TPG M L SKS D L+ILVLDEAD LL G+
Sbjct: 258 LPLKAQEAELRNRPDVVVCTPGRMIDHLRN----SKSVHMDDLEILVLDEADRLLELGFT 313
Query: 81 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 140
+++ L + P Q +L SAT +S VD+L L + P ++ + D+ ++ + V+
Sbjct: 314 EEVLELVRMCPVQRQTMLFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVR- 372
Query: 141 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 200
I + D IL L + ++F T A R+ + GIK+A L+ L Q
Sbjct: 373 --IRPNREDDREAILLALCTRTFRTNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLMQ 430
Query: 201 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 260
RL L++F G D L+ TD RG
Sbjct: 431 RERLEALQKFRDGTVDILLCTD---------------------------------IAARG 457
Query: 261 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI----KSFV 316
ID + VH VIN+EMP++ YVHR+GRT RA G +V+L S + +++ K FV
Sbjct: 458 IDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESRRLVMKQVSRHCKGFV 517
Query: 317 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 376
+ P P++AQ + R E + V + + E L +
Sbjct: 518 -------KSRAVPDPVIAQ-----WKARIESMQGDVKLV---------MHEETLEKRMRE 556
Query: 377 AHFEVNPKDLDLLKHDKDLSKKP 399
A E + +LLKH +++ +P
Sbjct: 557 AEKEAT-RATNLLKHRDEINSRP 578
>gi|296808427|ref|XP_002844552.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
gi|238844035|gb|EEQ33697.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
Length = 807
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 142/283 (50%), Gaps = 44/283 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+IL+LDEAD +L G+ ++L + IP+
Sbjct: 415 PDVIIATPGRFIDHMRN----SASFTVDTLEILILDEADRMLEDGFAEELNEILTTIPKS 470
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +S VDKL ++ L+ P L + D K + + VQ+F + DK L
Sbjct: 471 RQTMLFSATMTSSVDKLIRVGLNKPIRLMV----DSKKQTVGTLVQEFVRLRPGREDKRL 526
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L + + ++F A R+++ G+K+A L+ + Q R+ +E+F
Sbjct: 527 AYLMFLCKTVYTSRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRD 586
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G YL+ATD L S RG+D K V TVIN+
Sbjct: 587 GKVSYLLATD----------------------------LAS-----RGLDIKGVETVINY 613
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 314
E PQ+ Y+HR+GRT RA +G + ++ + PD + E +K+
Sbjct: 614 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKA 656
>gi|390604335|gb|EIN13726.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 785
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 144/295 (48%), Gaps = 44/295 (14%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
AAL PD+VIATPG + L S SF+ D+L ILVLDEAD +LS G+ D+L +
Sbjct: 316 AALRSKPDVVIATPGRLIDHLRN----SPSFNLDALDILVLDEADRMLSDGFADELAEII 371
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCS 146
P+ Q +L SAT + VD+L K+ L P L + D K +Q+F +
Sbjct: 372 KSCPKSRQTMLFSATMTDSVDELVKMSLDKPVRLFV----DPKRSTAKGLIQEFVRVRAG 427
Query: 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
+ + IL L + +IF + +A ++++ +K A L+ +L Q RL
Sbjct: 428 KESERSAILVALCKRTFKSGVIIFFRSKKLAHQMRIVFSLLYMKCAELHGDLTQEQRLKA 487
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L++F G D+L+ATD L S RG+D K V
Sbjct: 488 LQQFRDGSVDFLMATD----------------------------LAS-----RGLDIKGV 514
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDE 320
VIN++MP A Y+HR+GRT RA G SV+LV + K+ + IK GDD+
Sbjct: 515 DIVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKAAIKHGAGDDQ 569
>gi|258563228|ref|XP_002582359.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
gi|237907866|gb|EEP82267.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
Length = 836
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 178/389 (45%), Gaps = 58/389 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
+ QL + L PD++IATPG + S SF+ D+L+ILVLDEA
Sbjct: 412 ITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEA 467
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 468 DRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DAKK 523
Query: 132 EVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ + VQ+F + K + L LL + + ++F A R ++ G+K
Sbjct: 524 QTVGTLVQEFVRLRPGREGKRMGYLVLLCQTVYTNRVIVFFRQKKEAHRARIVFGLLGLK 583
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+A L+ + Q R+H +E F G +L+ATD
Sbjct: 584 AAELHGSMSQEQRIHAVEAFRDGKVPFLLATD---------------------------- 615
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
L S RG+D K V +VIN+E PQ+ Y+HR+GRT RA +G + ++ + + KI
Sbjct: 616 LAS-----RGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKI-- 668
Query: 311 EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEIL 370
+K+ V + + I++ ++ N + + E++ + I L+ E
Sbjct: 669 -VKAAVKAGRAQGAKIVS--RIVDPNVADEWAIKVEEMQSEIEDI---------LKEEKA 716
Query: 371 NSEKLKAHFEVNPKDLDLLKHDKDLSKKP 399
+A +V + +L+KH+ ++ +P
Sbjct: 717 EKHLAQAEMQVT-RGHNLIKHEDEIMSRP 744
>gi|242778101|ref|XP_002479171.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218722790|gb|EED22208.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 833
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 139/294 (47%), Gaps = 43/294 (14%)
Query: 17 QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL 75
QL + L PDI+IATPG + S SF+ D+L+ILVLDEAD +L
Sbjct: 415 QLIGGFSLREQENVLKKRPDIIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRML 470
Query: 76 SYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP 135
G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K +
Sbjct: 471 EDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DAKKQTAG 526
Query: 136 KNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 194
VQ+F + DK L L L ++ + +IF A R+++ FG+K+A L
Sbjct: 527 TLVQEFVRLRPGREDKRLASLIHLCQQVYAARVIIFFRQKKEAHRVRVIFGLFGLKAAEL 586
Query: 195 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 254
+ + Q R+ +E+F G +L+ATD
Sbjct: 587 HGSMSQEQRIKSVEDFRDGKVAFLLATDVAS----------------------------- 617
Query: 255 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D K V TVIN+E PQ Y+HR+GRT RA +G + +L + + K+
Sbjct: 618 ----RGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKV 667
>gi|301110278|ref|XP_002904219.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262096345|gb|EEY54397.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 758
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 110/383 (28%), Positives = 169/383 (44%), Gaps = 67/383 (17%)
Query: 22 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 80
+P A L PD+V+ TPG M L SKS D L+ILVLDEAD LL G+
Sbjct: 240 LPLKAQEAELRNRPDVVVCTPGRMIDHLRN----SKSVHMDDLEILVLDEADRLLELGFT 295
Query: 81 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 140
+++ L + P Q +L SAT +S VD+L L + P ++ + D+ ++ + V+
Sbjct: 296 EEVLELVRMCPVQRQTMLFSATMTSKVDQLIDLSMKRPVRISTDPLFDMAKHLVQEFVR- 354
Query: 141 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 200
I + D IL L + ++F T A R+ + GIK+A L+ L Q
Sbjct: 355 --IRPNREDDREAILLALCTRTFRSNTIVFMETKSHAHRMMIIFGLAGIKAAELHGNLQQ 412
Query: 201 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 260
RL L++F G D L+ TD RG
Sbjct: 413 RERLEALQKFRDGTVDVLLCTD---------------------------------IAARG 439
Query: 261 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI----KSFV 316
ID + VH VIN+EMP++ YVHR+GRT RA G +V+L S + +++ + FV
Sbjct: 440 IDVRGVHAVINYEMPKDITTYVHRVGRTARAGRNGRAVTLTSESRRLVMKQVSRHCQGFV 499
Query: 317 GDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLK 376
+ P P++AQ + R E + + V + + E L +
Sbjct: 500 -------KSRAVPDPVIAQ-----WKARIESMLEDVKLV---------MHEETLEKRMRE 538
Query: 377 AHFEVNPKDLDLLKHDKDLSKKP 399
A E + +LLKH +++ +P
Sbjct: 539 AEKEAT-RATNLLKHRDEINARP 560
>gi|378728301|gb|EHY54760.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 813
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 44/305 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
+ Q+ P + A L PD+VIATPG + S SF ++++ILVLDEA
Sbjct: 386 ITFAQVVGGFPLREQEAILKKRPDVVIATPGRFIDHMRN----SASFVVENIEILVLDEA 441
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ED+L + IP+G Q +L SAT + VDKL ++ ++ P L++ D K
Sbjct: 442 DRMLETGFEDELNEILKTIPKGRQTMLFSATMTDSVDKLVRVGMNRPVRLSV----DAKK 497
Query: 132 EVIPKNVQQFWISCSERDKL-LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ VQ+F R+ L L L +L ++ +IF A R+++ G+K
Sbjct: 498 STVSGLVQEFVRLRPGRENLRLATLCVLCKNFFTERTIIFFRQKKEAHRVRIVFGLLGLK 557
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ L+ + Q R+ + F G +L+ATD
Sbjct: 558 AGELHGSMSQEQRISAVNAFREGKTTHLLATD---------------------------- 589
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIF 309
L S RG+D KNV TV+N+E PQ Y+HR+GRT RA +G + ++ + PD +
Sbjct: 590 LAS-----RGLDIKNVMTVVNYEAPQTHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVR 644
Query: 310 EEIKS 314
+KS
Sbjct: 645 AAVKS 649
>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2080]
gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2080]
Length = 437
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 144/286 (50%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG + L + SF L++L+LDEAD +L G+ D++ + +P Q
Sbjct: 125 DILIATPG---RLLDLYQQNAMSF-QKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S D+ L K I++NP V+ V P+N V Q WI ++++
Sbjct: 181 NLMFSATFSEDIRDLAKTIVNNP----------VEISVTPRNSTAVSVTQ-WIHPVDKNQ 229
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++L L + ++ L+F+ T A RL FL+K GI++A ++ Q +R L EF
Sbjct: 230 KRHLLVELINQHNWEQVLVFSRTKRGANRLAEFLDKKGIQAAAIHGNKSQGARTRALSEF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + + V+
Sbjct: 290 KSGKLRVLVATDI---------------------------------AARGLDIEQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N ++P+ A YVHRIGRTGRA TG ++SLVS DE ++ ++I+ +
Sbjct: 317 NLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQDIERLI 362
>gi|145481669|ref|XP_001426857.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393934|emb|CAK59459.1| unnamed protein product [Paramecium tetraurelia]
Length = 542
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 111/392 (28%), Positives = 175/392 (44%), Gaps = 82/392 (20%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS---DSLKILVLDEADLL 74
+ ++P A L PDI+IATPG + + SFS S+++LVLDEAD L
Sbjct: 195 VIGAVPIQQQEAELRRYPDIIIATPGRIVDIMKN------SFSIDLSSIEVLVLDEADRL 248
Query: 75 LSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVI 134
+ G+E ++K + PR Q +L+SAT + V +L L LH P +++ V +
Sbjct: 249 MEMGFEAEIKEILQQTPRDRQTVLVSATLKATVKQLSLLALHKPVKVSVDYVDG-----L 303
Query: 135 PKNVQQFWI---SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
++Q+ + S E+D+ ++ LL+ + ++ K +IF T RL++ L + S
Sbjct: 304 AYGLKQYILRIDSDEEKDREATLIALLQQKFIE-KTIIFVRTKHDCHRLQILLGLKNLSS 362
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
L+ L Q R+ E+F G F YL+ATD
Sbjct: 363 CELHGNLTQQQRIQAYEDFKEGKFQYLLATD----------------------------- 393
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF-- 309
RG+D NV VINFE+P + Y+HR+GRT R N G SV++ E+ F
Sbjct: 394 ----LAARGLDIANVKAVINFEIPYETSRYIHRVGRTARIGNQGVSVTICLKKEVSQFKQ 449
Query: 310 -------------------EEIKSFVGDDENEDSNIIA---------PFPLLAQNAVESL 341
EEIKS + E + II +LAQ A +
Sbjct: 450 MIKESKQKLFKLNFNIESIEEIKSDLKSLEPKIKKIIKGEVFEKEIHQTEILAQRAQNLI 509
Query: 342 RYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 373
++R E + + K ++ ++ + LRN+I E
Sbjct: 510 QHRVE-IMRKPKKEWIQSAQQKKLRNQIQQEE 540
>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
gi|118595361|sp|Q0V1Z7.1|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
Length = 808
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 172/371 (46%), Gaps = 66/371 (17%)
Query: 35 PDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD+VIATPG + +T Q + L+ILVLDEAD +L G+E L + IP+
Sbjct: 407 PDVVIATPGRFIDHMHNTAAFQV----EHLEILVLDEADRMLEEGFETQLNEILTTIPKS 462
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERDKLL 152
Q +L SAT +S VDKL ++ + P L + D K + Q+F + + DK L
Sbjct: 463 RQTMLFSATMTSTVDKLIRIGMDKPVRLMV----DAKKHTVKGLTQEFIRLRQGKEDKRL 518
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L + ++ ++ +IF A R+++ G+K++ L+ + Q R+ +E F +
Sbjct: 519 AYLMYICEKIYTERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRS 578
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G YL+ATD RG+D KNV TVIN+
Sbjct: 579 GKSSYLLATDVAS---------------------------------RGLDIKNVSTVINY 605
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPL 332
E PQ+ Y+HR+GRT RA +G + +L + + K+ +K V ++ S ++
Sbjct: 606 EAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV---VKQAVKQSRDQGSKVV----- 657
Query: 333 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL----DL 388
S + E+ + + K+ E +D +L EK + + +DL +L
Sbjct: 658 -------SRQVPVEETDRWMEKLRGLEDEIED----VLKEEKEERTLSITERDLKRGMNL 706
Query: 389 LKHDKDLSKKP 399
++H+ ++ +P
Sbjct: 707 IEHEAEIKSRP 717
>gi|71414286|ref|XP_809250.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70873604|gb|EAN87399.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 592
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 241/511 (47%), Gaps = 62/511 (12%)
Query: 4 IELCKGQVQL----------KVV--QLTSSMPASDLRAALAGPPDIVIATPGCMPKCLST 51
+ELC+ V++ +VV LTS + R A A P I++ T + K +
Sbjct: 98 VELCEQTVEVVTALAKYVRPRVVVDNLTSRGVVTKARVA-AAP--ILVTTAALLGKHCRS 154
Query: 52 GVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK 111
G + ++ + +L+ +V+DE D ++S E L+A+ +V+P Q +L SAT + V +K
Sbjct: 155 GTVTAEDLA-TLRCVVIDEVDFVISIA-EGSLRAVQSVLPPSVQTILSSATLTDGVVHIK 212
Query: 112 KLILHNPYILTL---------PEVGDVKDEVIPKNVQQFWISCSERDKLLYILT------ 156
+LHNP +TL P G+ + V+ + + I+ ER + Y++
Sbjct: 213 SQLLHNPVTITLSTDDENEMTPTEGE--NIVVESRITKKGINSEERLRHYYLVATDECHH 270
Query: 157 ------LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
L +L ++ K LIF N + ++++ FL + G+++ + ++ LP N R+ L F
Sbjct: 271 HTLLYALYRLGHIKGKTLIFVNEEEKTYKVQSFLAQLGVEALVYDSNLPLNVRVDTLHRF 330
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE----FGVVRGIDFKNV 266
G L+ TD T + + +++ ++ H K +E + RGIDF +V
Sbjct: 331 QVGSVGTLVCTDGTLESVDNLQESIPGAEAQTTRMHSKKGKRTEDRHDGALQRGIDFSDV 390
Query: 267 HTVINFE---MPQNAAG--YVHRIGRTGRAYNTGASVSLVSPDE-MKIFEEIKSFVGDDE 320
V+ F+ P +A Y HR+GR GRA G +++L + + ++ ++ +G
Sbjct: 391 RNVVLFDGIAHPTTSAFSLYTHRVGRAGRAGKGGMAITLFTLQQAQRVTRHLRRHLGATH 450
Query: 321 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 380
+ PF L + L+YR ++V S+T+ + R R + E+ S LK+H
Sbjct: 451 ----DTFEPFKQLRRQEAAKLQYRVDNVLFSITRSSTRRQRISSVAAELTRSAYLKSHM- 505
Query: 381 VNPKDLDLLKHDKDLSKKPPA--SHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR 438
+ KD +L+ SKK + L DVP Y+ A K K RA +K+SS
Sbjct: 506 -SQKDEAVLQRILSRSKKTTKCDTTLLDVPHYMHIEGVDSAEKYRKRVRACTSSKSSSAS 564
Query: 439 QGPRRKFRKSDPLKSFSAEPTKRAGKGRMKR 469
Q PR + R DPL ++ + GK + +R
Sbjct: 565 QQPRTRSR--DPLSRVAS--AVKMGKAKKRR 591
>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 496
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 149/294 (50%), Gaps = 53/294 (18%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
AAL DI++ATPG + L ++ SFS +L+ILVLDEAD +L G+ D++ + A
Sbjct: 118 AALKQGVDILVATPG---RLLDLCNQRALSFS-TLEILVLDEADRMLDMGFIRDIRKVLA 173
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWI 143
++P+ Q L+ SAT S D+ +L K +++NP V+ V P+N V Q+
Sbjct: 174 MLPKQRQNLMFSATFSDDIRELAKGLVNNP----------VEISVTPRNATANTVTQWVT 223
Query: 144 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
+ DK ++ L+K Q + L+F+ T A R+ LE IK+A ++ Q +R
Sbjct: 224 PVGQSDKTSVLIDLIKDNNWQ-QVLVFSRTKHGANRIAKNLEAASIKAAAIHGNKSQGAR 282
Query: 204 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 263
L +F AG ++ATD RGID
Sbjct: 283 TKALADFKAGKVQVMVATDI---------------------------------AARGIDI 309
Query: 264 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+ V+NF++P + YVHRIGRTGRA +G +VSLV+ +E+K+ +I+ +G
Sbjct: 310 DQLPFVVNFDLPNVSEDYVHRIGRTGRAGASGQAVSLVADEEVKLLHDIERLIG 363
>gi|325179957|emb|CCA14359.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 843
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 132/278 (47%), Gaps = 39/278 (14%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
PDI++ TPG M L DSL+ILVLDEAD LL G+ ++++ + + PR
Sbjct: 338 PDIIVCTPGRMIDHLRNS---PSVHLDSLEILVLDEADRLLELGFTEEIQEIVRMCPRAR 394
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q +L SAT +S +D+L L + P + + D+ ++ + V+ ++RD +L
Sbjct: 395 QTMLFSATMTSKIDQLIALSMKRPVRICADPLYDMSKHLVQEFVRIRPNREADRDAIL-- 452
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
L L Q K ++F T A R+ + GIK+A L+ L Q RL LE+F G
Sbjct: 453 LALCTRAFTQ-KTIVFMETKVHAHRMMILFGLSGIKAAELHGNLTQQERLDALEKFRQGA 511
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
D L+ TD RGID K V VIN+EM
Sbjct: 512 VDILLCTD---------------------------------VAARGIDVKGVRAVINYEM 538
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
P++ YVHR+GRT RA G +V+L S I +++
Sbjct: 539 PKDITTYVHRVGRTARAGQVGRAVTLTSEYRRLIMKQV 576
>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
Length = 446
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 144/286 (50%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG + L + SF L++L+LDEAD +L G+ D++ + +P+ Q
Sbjct: 134 DILIATPG---RLLDLYQQNAMSFQ-KLEVLILDEADRMLDMGFIHDIRRIMKALPKKRQ 189
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S D+ L K I++NP V+ V P+N V Q WI ++++
Sbjct: 190 NLMFSATFSEDIRDLAKTIVNNP----------VEISVTPRNSTAVSVTQ-WIHPVDKNQ 238
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++L L + ++ L+F+ T A RL FLEK I++A ++ Q +R L EF
Sbjct: 239 KRHLLVELINQHNWEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEF 298
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + + V+
Sbjct: 299 KSGKLRVLVATDI---------------------------------AARGLDIEQLPQVV 325
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N ++P+ A YVHRIGRTGRA TG ++SLVS DE ++ ++I+ +
Sbjct: 326 NLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQDIERLI 371
>gi|325091017|gb|EGC44327.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H88]
Length = 828
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 174/368 (47%), Gaps = 60/368 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 426 PDVIIATPGRFIDHMR----NSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 481
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +++VDKL ++ L+ P L + D K + + +Q+F E +L
Sbjct: 482 RQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAKKQTVGTLIQEFVRLRPGREEKRL 537
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ L K + + + ++F + A R+++ G+K L+ + Q R+ +E F
Sbjct: 538 GYLIVLCK-NIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFR 596
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD RG+D K V TVIN
Sbjct: 597 DGKVSFLLATDVAS---------------------------------RGLDIKGVETVIN 623
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
+E PQ+ Y+HR+GRT RA +G + +L + + K+ +K+ V + + I++
Sbjct: 624 YEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV---VKAAVKTGRAQGAKIVSRLI 680
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
A E+ ++ A+ + LR E + +A EV + +LL H
Sbjct: 681 ETA----EADKWAAKVEEMQEEVQEI-------LREEKEEKQLAQAEMEVT-RGSNLLNH 728
Query: 392 DKDLSKKP 399
DK++ +P
Sbjct: 729 DKEIMSRP 736
>gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
Length = 826
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 135/276 (48%), Gaps = 43/276 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDI+IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 426 PDIIIATPGRFIDHMRN----SSSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 481
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VDKL ++ L+ P L + D K + VQ+F + DK L
Sbjct: 482 RQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DAKKQTAGTLVQEFVRLRPGREDKRL 537
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L ++ + +IF A R+++ FG+K+A L+ + Q R+ +E+F
Sbjct: 538 ASLIHLCQQVYTSRVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRD 597
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD RG+D K V TVIN+
Sbjct: 598 GKVAFLLATDVAS---------------------------------RGLDIKGVETVINY 624
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
E PQ Y+HR+GRT RA +G + +L + + K+
Sbjct: 625 EAPQTHEIYLHRVGRTARAGRSGRACTLAADPDRKV 660
>gi|240274680|gb|EER38196.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H143]
Length = 828
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 174/368 (47%), Gaps = 60/368 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 426 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 481
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +++VDKL ++ L+ P L + D K + + +Q+F E +L
Sbjct: 482 RQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAKKQTVGTLIQEFVRLRPGREEKRL 537
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ L K + + + ++F + A R+++ G+K L+ + Q R+ +E F
Sbjct: 538 GYLIVLCK-NIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVEGFR 596
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD RG+D K V TVIN
Sbjct: 597 DGKVSFLLATDVAS---------------------------------RGLDIKGVETVIN 623
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
+E PQ+ Y+HR+GRT RA +G + +L + + K+ +K+ V + + I++
Sbjct: 624 YEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV---VKAAVKTGRAQGAKIVSRLI 680
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
A E+ ++ A+ + LR E + +A EV + +LL H
Sbjct: 681 ETA----EADKWAAKVEEMQEEVQEI-------LREEKEEKQLAQAEMEVT-RGSNLLNH 728
Query: 392 DKDLSKKP 399
DK++ +P
Sbjct: 729 DKEIMSRP 736
>gi|327295054|ref|XP_003232222.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
gi|326465394|gb|EGD90847.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
Length = 813
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 141/283 (49%), Gaps = 44/283 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ ++L + IP+
Sbjct: 418 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKS 473
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +S VDKL +L L+ P L + D K + + VQ+F + DK L
Sbjct: 474 RQTMLFSATMTSSVDKLIRLGLNKPVRLMV----DSKKQTVGTLVQEFVRLRPGREDKRL 529
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L + + ++F A R+++ G+K+A L+ + Q R+ +E+F
Sbjct: 530 GYLMFLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRD 589
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
YL+ATD L S RG+D K V TVIN+
Sbjct: 590 AKVSYLLATD----------------------------LAS-----RGLDIKGVETVINY 616
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 314
E PQ+ Y+HR+GRT RA +G + ++ + PD + E +K+
Sbjct: 617 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKA 659
>gi|428671875|gb|EKX72790.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 405
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 110/388 (28%), Positives = 186/388 (47%), Gaps = 61/388 (15%)
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVI-----PRGCQCLLMSATSSSDVDKLKKLILHN 117
L+ L++DEADLL +GY+ + + + P+ Q +L+SAT +V++L ++L+
Sbjct: 29 LQYLLVDEADLLFEFGYKKETMKFAEALRVKCTPKRFQAVLLSATMDKEVEELANMLLYK 88
Query: 118 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
P E +V +V +++++I E D+ L + TL+K+E + +IF N+
Sbjct: 89 P------EYIEVARDVDMGTIKEYYIEVPEDDRPLMLYTLIKMETLPSSRIIFVNSNQRG 142
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237
+ L L K I S +L+ L R+ I++ FN G+ D LI D +T
Sbjct: 143 YFLYCLLRKLYIDSKVLSKLLSPKLRMSIIQSFNQGMIDTLIVVDTEET----------- 191
Query: 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
+ RGIDFK+V VIN++ P++ Y+HRIGR GR + S
Sbjct: 192 -------------------LSRGIDFKSVKCVINYDEPESLDSYIHRIGRGGRLTD---S 229
Query: 298 VSLVSPDEMKIFEEIKSFVGDDEN--EDSNIIAPFP--LLAQNAVES-----LRYRAEDV 348
V+++ E + + GD EN DS + A F L + +E+ L+YR ED
Sbjct: 230 VAILMCKE-AVSRTLDEGAGDSENPTYDSPMEAIFSERSLEKLGIEASSLVPLKYRIEDA 288
Query: 349 AKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH----DKDLSKKPPASHL 404
+K VT + ++ Q +R L+ ++ A +V +D +LK D +L K HL
Sbjct: 289 SKVVTPKLIEIAKMQAVRQSALHEDEFIA--KVTSRDAQMLKEVLKTDNELL-KADKKHL 345
Query: 405 RDVPDYLLDAKTQEACKMVKLARAAMGN 432
+P Y++D ++ + V+ A N
Sbjct: 346 DYIPKYIMDEGLRKDVEGVRRITGAKKN 373
>gi|404398904|ref|ZP_10990488.1| DEAD/DEAH box helicase-like protein [Pseudomonas fuscovaginae
UPB0736]
Length = 621
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 138/289 (47%), Gaps = 59/289 (20%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++A PG + G + ++ILVLDEAD +L G+ D+K + A +P Q
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSH----VEILVLDEADRMLDMGFVHDVKKVLARLPAKRQ 186
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FWISCSER 148
LL SAT S D+ L +LHNP + EV P N ++Q F ++ S +
Sbjct: 187 NLLFSATFSKDITDLAGKLLHNPERI----------EVTPPNTTVERIEQRVFRLAASHK 236
Query: 149 DKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
LL +++T E V L+FT T A RL +L+K G+ +A ++ QN+R L
Sbjct: 237 RALLAHLITTGAWEQV----LVFTRTKHGANRLAEYLDKHGLSAAAIHGNKSQNARTKAL 292
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG L+ATD RG+D +
Sbjct: 293 ADFKAGEIRILVATDI---------------------------------AARGLDIDQLP 319
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 320 HVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMT 368
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 200/457 (43%), Gaps = 67/457 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL PDIV+ATPG M L QS + L ILVLDEAD LL G+ +++ L +
Sbjct: 234 ALRTHPDIVVATPGRMIDHLRN--TQSVGLEE-LAILVLDEADRLLELGFREEIHELVKL 290
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEV---GDVKDEVIPKNVQQFWISC 145
P Q +L SAT + +V +L KL L +P L+ P + +EVI +
Sbjct: 291 CPSRRQTMLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIR------AG 344
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
E DK +L+L L + K +IF+ T A RLK+ G+KSA L+ L Q RL
Sbjct: 345 HEGDKEAIVLSLCSRSL-KSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLE 403
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
LE F D+LIATD RG+D
Sbjct: 404 ALEAFRKQEVDFLIATD---------------------------------VAARGLDIIG 430
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 325
V +VIN E P+ YVHR+GRT RA G SV+L++ + + + + G +
Sbjct: 431 VESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVAKRAGSKLQKR-- 488
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
++A ++ S R R E + + + +I +E + LR KA E N K
Sbjct: 489 ------VVAATSIASWRERIEKMEEDLVQILQQEREEKFLR---------KAEMEAN-KA 532
Query: 386 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKF 445
+++ ++ ++ +P + + D AK A L + A+ Q +++
Sbjct: 533 QNMMDYEAEIFARPKKTWFQSQQDKTRIAKVSPASYGPALKKKAISVDEGEELQ--KKEK 590
Query: 446 RKSDPLKSFSAEPTKRAGKGRMKREGRNGDDTGKHKK 482
RK++ K+ + +R R E +D +H+K
Sbjct: 591 RKAETEKALPRKKRRRLEAARETAEEGADEDENQHRK 627
>gi|451852848|gb|EMD66142.1| hypothetical protein COCSADRAFT_179496 [Cochliobolus sativus
ND90Pr]
Length = 814
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 144/300 (48%), Gaps = 44/300 (14%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 76
+ + + A L PD+VIATPG + +T Q ++L+ILVLDEAD +L
Sbjct: 393 MAGGFSSREQEAVLKTRPDVVIATPGRFIDHMHNTAAFQV----ENLEILVLDEADRMLE 448
Query: 77 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 136
G+E L + IP+ Q +L SAT +S VDKL ++ + P L + D K + +
Sbjct: 449 EGFESQLNEILTTIPKSRQTMLFSATMTSSVDKLIRIGMDKPVRLMV----DAKKQTVKG 504
Query: 137 NVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 195
Q+F + + DK L L + ++ +K ++F A R+++ G+K++ L+
Sbjct: 505 LTQEFVRLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELH 564
Query: 196 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 255
+ Q R+ +E F +G YL+ATD
Sbjct: 565 GNMSQEQRIQAVEAFRSGKSSYLLATDVAS------------------------------ 594
Query: 256 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 314
RG+D KNV TVIN+E PQ Y+HR+GRT RA +G + +L + PD + + +K+
Sbjct: 595 ---RGLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKA 651
>gi|388542926|ref|ZP_10146218.1| DEAD/DEAH box helicase-like protein [Pseudomonas sp. M47T1]
gi|388279012|gb|EIK98582.1| DEAD/DEAH box helicase-like protein [Pseudomonas sp. M47T1]
Length = 649
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 59/289 (20%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++A PG + G + ++ILVLDEAD +L G+ D+K + A +P Q
Sbjct: 131 DVLVACPGRLLDLCGQGSVDL----SHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQ 186
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FWISCSER 148
LL SAT S D+ L +LHNP + EV P N ++Q + +S S +
Sbjct: 187 NLLFSATFSKDITDLAGRLLHNPERI----------EVTPPNTTVERIEQRVYRLSASHK 236
Query: 149 DKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
LL +++T E V L+FT T A RL +LEK G+ + ++ QN+R L
Sbjct: 237 RSLLAHLITQGAWEQV----LVFTRTKHGANRLAEYLEKHGLSAVAIHGNKSQNARTKAL 292
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG ++ATD RG+D +
Sbjct: 293 ADFKAGSVRIMVATDI---------------------------------AARGLDIDQLP 319
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 320 HVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMT 368
>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
Length = 1676
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 182/390 (46%), Gaps = 60/390 (15%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
+ QL + L PD++IATPG + S SF+ D+L+ILVLDEA
Sbjct: 890 ITFCQLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEA 945
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 946 DRMLEDGFADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DTKK 1001
Query: 132 EVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
VQ+F E +L Y+L L K E+ + ++F A R+++ G+
Sbjct: 1002 NTAVTLVQEFVRLRPGREDKRLGYLLHLCK-EVYTGRVIVFFRQKKEAHRVRIVFGLLGL 1060
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
K+A L+ + Q R+ +E F G ++L+ATD
Sbjct: 1061 KAAELHGSMSQEQRIKSVESFRDGNVNFLLATDLAS------------------------ 1096
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RG+D K V TVIN+E PQ+ YVHR+GRT RA +G + ++ + + K+
Sbjct: 1097 ---------RGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDRKV- 1146
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEI 369
+K+ V + + + I++ ++ + + +A+D+ + + + L E
Sbjct: 1147 --VKAAVKAGKAQGAKIVS--RVVDPSVADDWASKAKDMEEEIDAV---------LEEEK 1193
Query: 370 LNSEKLKAHFEVNPKDLDLLKHDKDLSKKP 399
L + +A +V K +L+KH+ ++ +P
Sbjct: 1194 LEKQLAQAEMQVT-KGENLIKHEAEIKSRP 1222
>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
Length = 446
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 143/286 (50%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG + L + SF L++L+LDEAD +L G+ D++ + +P Q
Sbjct: 125 DILIATPG---RLLDLYQQNAMSF-QKLEVLILDEADRMLDMGFIHDIRRIMKALPNKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S D+ L K I++NP V+ V P+N V Q WI ++++
Sbjct: 181 NLMFSATFSEDIRDLAKTIVNNP----------VEISVTPRNSTAVSVTQ-WIHPVDKNQ 229
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++L L + ++ L+F+ T A RL FLEK I++A ++ Q +R L EF
Sbjct: 230 KRHLLVELINQHNWEQVLVFSRTKRGANRLAEFLEKKDIQAAAIHGNKSQGARTRALSEF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + + V+
Sbjct: 290 KSGKLRVLVATDI---------------------------------AARGLDIEQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N ++P+ A YVHRIGRTGRA TG ++SLVS DE ++ ++I+ +
Sbjct: 317 NLDLPEVAQDYVHRIGRTGRAGATGQAISLVSADEAQLLQDIERLI 362
>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 805
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 142/300 (47%), Gaps = 44/300 (14%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 76
+ D A L PD+VIATPG + +T Q + L+ILVLDEAD +L
Sbjct: 380 MAGGFSTRDQEAVLKTRPDVVIATPGRFIDHMHNTAAFQV----EHLEILVLDEADRMLE 435
Query: 77 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 136
G+E L + IP+ Q +L SAT +S VDKL ++ + P L + D K +
Sbjct: 436 EGFESQLNEILTTIPKSRQTMLFSATMTSSVDKLIRIGMDKPVRLMV----DAKKHTVAG 491
Query: 137 NVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 195
Q+F + + DK L L + ++ +K ++F A R+++ G+K++ L+
Sbjct: 492 LTQEFVRLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELH 551
Query: 196 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 255
+ Q R+ +E F +G YL+ATD
Sbjct: 552 GNMSQEQRIQSVEAFRSGKSAYLLATDVAS------------------------------ 581
Query: 256 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 314
RG+D KNV TVIN+E PQ+ Y+HR+GRT RA +G + +L + PD + + +K+
Sbjct: 582 ---RGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKA 638
>gi|440636791|gb|ELR06710.1| hypothetical protein GMDG_00327 [Geomyces destructans 20631-21]
Length = 787
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 136/276 (49%), Gaps = 43/276 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDI+IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 385 PDIIIATPGRFIDHMRN----SPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 440
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +S VDKL ++ L+ P L + D + + VQ+F + DK +
Sbjct: 441 RQTMLFSATMTSSVDKLIRVGLNRPVRLMV----DAQRSTVTTLVQEFVRLRPGREDKRM 496
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L ++ K ++F A R ++ G+K+A L+ L Q R+ +E F
Sbjct: 497 GYLLYLCQKVFHNKVIVFFRQKKEAHRARVIFGLSGMKAAELHGSLSQEQRIASVEAFRD 556
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G YL+ATD L S RG+D K V TVIN+
Sbjct: 557 GKVSYLLATD----------------------------LAS-----RGLDIKGVDTVINY 583
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
E PQ+ Y+HR+GRT RA +G + +L + + K+
Sbjct: 584 EAPQSLEIYLHRVGRTARAGRSGRACTLAAEPDRKV 619
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSGEIKKLAATYLRNPQTIEV-----ARSNSTATNVTQIVYEVAEGDKTGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ G+ + ++ + QN R+ L+ F G
Sbjct: 250 QLIR-ERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|90416628|ref|ZP_01224559.1| putative ATP-dependent RNA helicase RhlE [gamma proteobacterium
HTCC2207]
gi|90331827|gb|EAS47055.1| putative ATP-dependent RNA helicase RhlE [gamma proteobacterium
HTCC2207]
Length = 549
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 142/285 (49%), Gaps = 51/285 (17%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + S ++ F+ L++LVLDEAD +L G+ D+K + +++P+ Q
Sbjct: 126 DVLVATPGRLMDLYSQNAVK---FT-YLEVLVLDEADRMLDMGFIHDIKRIISLLPKRRQ 181
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS----ERDKL 151
L+ SAT S D+ KL K ++HNP ++ V P+N ++ S ++ +
Sbjct: 182 NLMFSATFSDDIRKLAKGLVHNP----------IEISVTPRNATAPTVTQSIYTVDKKQK 231
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+LT L + +AL+FT T A +L LE GI +A ++ Q +R L F
Sbjct: 232 AGVLTRLIHDNKWGQALVFTKTKHGANKLTKHLEAEGIVAAAIHGNKSQGARTKALAGFK 291
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
AG L+ATD RG+D + + V+N
Sbjct: 292 AGEVRILVATDI---------------------------------AARGLDIEQLPQVVN 318
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
F++P A YVHRIGRTGRA +TG ++SLVS DE+ + +I+
Sbjct: 319 FDLPNVAEDYVHRIGRTGRAGSTGTAISLVSADEVDLLSDIERLT 363
>gi|409083507|gb|EKM83864.1| hypothetical protein AGABI1DRAFT_117335, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 701
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 127/452 (28%), Positives = 210/452 (46%), Gaps = 78/452 (17%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
I LC L V L+ +DLR+ PDIVIATPG L + S SFS D+
Sbjct: 296 IRLC-----LVVGGLSLKSQEADLRSR----PDIVIATPGR----LIDHIRNSASFSLDA 342
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
L ILV+DEAD +LS G+ D+L + PR Q +L SAT + VD+L ++ L P L
Sbjct: 343 LDILVIDEADRILSEGFSDELTEIIKSCPRSRQTMLFSATMTDSVDELVRVSLEKPVRLF 402
Query: 123 LPEVGDVKDEVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
+ D K +Q+F + E ++ ++TL + +++ ++F + +A ++
Sbjct: 403 V----DPKRTTARGLIQEFVRVRAGKEAERSAMLVTLCR-RTFKRRVIVFLRSKKLAHQM 457
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
++ G+K L+ +L Q RL L+ F D+L+ATD
Sbjct: 458 RIVFSLLGMKCEELHGDLSQEQRLRALQLFRDDAVDFLMATD------------------ 499
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
L S RG+D K V TVIN++MP A Y+HR+GRT RA G +V+L
Sbjct: 500 ----------LAS-----RGLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVTL 544
Query: 301 VSPDEMKIFE-EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 359
V + K+ IK +D+ + + P E+L++ ++ + + +++
Sbjct: 545 VGEADRKMLRAAIKHAAAEDQVR--HRVLP--------TEALQHWSDKL------VELKD 588
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHL-----RDVPDYLLDA 414
+ LR E + LKA EV K +L++H ++ +P + + +
Sbjct: 589 EISHVLREEKEEKQMLKAEMEVK-KGQNLIEHQNEIFSRPARTWFQTGQEKKASQTISKN 647
Query: 415 KTQEACKMVKLARAAMGN-KNSSRRQGPRRKF 445
+ ++ K + +AA K+S+ R+ RRK
Sbjct: 648 EHEQGSKPTQRPKAAANTQKHSTTRKAKRRKI 679
>gi|347537925|ref|YP_004845349.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
gi|345641102|dbj|BAK74935.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
Length = 560
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 143/291 (49%), Gaps = 43/291 (14%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
AAL P DI++ATPG + L ++ S ++ILVLDEAD +L G+ D+K + A
Sbjct: 121 AALRKPLDILVATPG---RLLDHAGQKTVDLS-GVEILVLDEADRMLDMGFIHDIKKVLA 176
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
++P Q LL SAT S ++ L +L+NP ++ + + +E++ + V +R
Sbjct: 177 LLPAKRQNLLFSATFSDEIKALADRLLNNPQLVEVARR-NTANELVEQKVH-----LVDR 230
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
DK +LT L + + L+FT T A RL L+K GI +A ++ QN+R L
Sbjct: 231 DKKTELLTHLISQGDWHQVLVFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNARTKALA 290
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +
Sbjct: 291 DFKANTLQVLVATDI---------------------------------AARGLDIDQLPH 317
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
V+NFE+P YVHRIGRTGRA N G +VSLV DE K ++I+ + D
Sbjct: 318 VVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLVCVDEFKFLKDIEKLIKKD 368
>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
Length = 805
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 142/300 (47%), Gaps = 44/300 (14%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 76
+ D A L PD+VIATPG + +T Q + L+ILVLDEAD +L
Sbjct: 380 MAGGFSTRDQEAVLKTRPDVVIATPGRFIDHMHNTAAFQV----EHLEILVLDEADRMLE 435
Query: 77 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 136
G+E L + IP+ Q +L SAT +S VDKL ++ + P L + D K +
Sbjct: 436 EGFESQLNEILTTIPKSRQTMLFSATMTSSVDKLIRIGMDKPVRLMV----DAKKHTVAG 491
Query: 137 NVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 195
Q+F + + DK L L + ++ +K ++F A R+++ G+K++ L+
Sbjct: 492 LTQEFVRLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELH 551
Query: 196 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 255
+ Q R+ +E F +G YL+ATD
Sbjct: 552 GNMSQEQRIQSVEAFRSGKSAYLLATDVAS------------------------------ 581
Query: 256 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 314
RG+D KNV TVIN+E PQ+ Y+HR+GRT RA +G + +L + PD + + +K+
Sbjct: 582 ---RGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKA 638
>gi|335420259|ref|ZP_08551297.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
gi|334894618|gb|EGM32803.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
Length = 437
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 135/286 (47%), Gaps = 51/286 (17%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DIV+ATPG + L G + +++ LVLDEAD +L G+ D+K + +P Q
Sbjct: 122 DIVVATPGRLLDLLQEG----HADLSNIQTLVLDEADRMLDMGFIHDIKRVLKYVPEKRQ 177
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS----CSERDKL 151
LL SAT S D+ KL +LH P V+ +V P+N I E+ +
Sbjct: 178 TLLFSATFSKDIRKLASSLLHKP----------VEIDVAPRNATADRIDQKVVMVEKPRK 227
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+L+ L E + L+F T A RL LE G+ SA L+ QN+R LE F
Sbjct: 228 RAVLSHLIKENGWHQVLVFARTKHGANRLCKQLESDGLPSAALHGNKSQNARTKALEGFK 287
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G L+ATD RGID +++ V+N
Sbjct: 288 DGKIQVLVATDIA---------------------------------ARGIDIESLPHVVN 314
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+E+P + YVHRIGRTGRA G +VSLV PDE K+ ++I+ +G
Sbjct: 315 YELPNVSEDYVHRIGRTGRAGEAGEAVSLVGPDERKLLKDIEKLIG 360
>gi|452002395|gb|EMD94853.1| hypothetical protein COCHEDRAFT_1128751 [Cochliobolus
heterostrophus C5]
Length = 815
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 144/300 (48%), Gaps = 44/300 (14%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 76
+ + + A L PD+VIATPG + +T Q ++L+ILVLDEAD +L
Sbjct: 394 MAGGFSSREQEAVLKTRPDVVIATPGRFIDHMHNTAAFQV----ENLEILVLDEADRMLE 449
Query: 77 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 136
G+E L + IP+ Q +L SAT +S VDKL ++ + P L + D K + +
Sbjct: 450 EGFESQLNEILTTIPKSRQTMLFSATMTSSVDKLIRIGMDKPVRLMV----DSKKQTVKG 505
Query: 137 NVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 195
Q+F + + DK L L + ++ +K ++F A R+++ G+K++ L+
Sbjct: 506 LTQEFVRLRQGKEDKRLAYLMYICEKIYTEKVIVFFRQKKEAHRVRVVFALCGLKASELH 565
Query: 196 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 255
+ Q R+ +E F +G YL+ATD
Sbjct: 566 GNMSQEQRIQAVEAFRSGKSSYLLATDVAS------------------------------ 595
Query: 256 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 314
RG+D KNV TVIN+E PQ Y+HR+GRT RA +G + +L + PD + + +K+
Sbjct: 596 ---RGLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKA 652
>gi|194337138|ref|YP_002018932.1| DEAD/DEAH box helicase [Pelodictyon phaeoclathratiforme BU-1]
gi|194309615|gb|ACF44315.1| DEAD/DEAH box helicase domain protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 418
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 155/318 (48%), Gaps = 57/318 (17%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
AAL DIVIATPG + L+ G L + ++ILVLDEAD +L G+ D+K + A
Sbjct: 119 AALIRGVDIVIATPGRLLDLLNQGFLSLRH----VEILVLDEADRMLDMGFIHDIKKILA 174
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+P+ Q L SAT +++ KL ILHNP +++ V E+I +++ +++ +
Sbjct: 175 VVPKQKQSLFFSATMPAEIVKLAATILHNPSKVSVTPVSSTV-EIINQSI--YFVDKGNK 231
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
+ LL + +L+ + + K AL+FT T A ++ LEK IK+ ++ QN+R L
Sbjct: 232 NSLL--VDILRDQAI-KTALVFTRTKHGADKVVKILEKHNIKAEAIHGNKAQNARQRALF 288
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
F A L+ATD RGID ++
Sbjct: 289 NFKAQTTRVLVATDIA---------------------------------ARGIDVDDLEY 315
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG------DDENE 322
VINFEMP A YVHRIGRTGRA G ++S +E + +I+ + DD +
Sbjct: 316 VINFEMPNIAETYVHRIGRTGRAGAKGTALSFCDAEEKEYLRDIEKLIAKKIPVIDDHS- 374
Query: 323 DSNIIAPFPLLAQNAVES 340
FPL+ N V++
Sbjct: 375 -------FPLMDHNPVKA 385
>gi|389751392|gb|EIM92465.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 812
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 143/295 (48%), Gaps = 46/295 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL PD+VIATPG + L S SF+ D+L ILVLDEAD +LS G+ D+L +
Sbjct: 333 ALRARPDVVIATPGRLIDHLRN----SPSFTLDALDILVLDEADRMLSDGFADELTEIIQ 388
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCS 146
P Q +L SAT + VD+L K+ L+ P L + D K VQ+F +
Sbjct: 389 SCPTSRQTMLFSATMTDSVDELVKMSLNKPVRLFV----DPKRSTARGLVQEFVRVRAGK 444
Query: 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
E D+ ++ L K + LIF + +A ++++ G+ L+ +L Q RL
Sbjct: 445 ESDRSALLVALCK-RTFKSGVLIFFRSKKLAHQVRIMFSLLGMSCEELHGDLSQEQRLKS 503
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L+ F G DYL+ATD L S RG+D K +
Sbjct: 504 LQLFRDGAVDYLMATD----------------------------LAS-----RGLDIKGI 530
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDE 320
TVINF+MP A Y+HR+GRT RA G SV+LV + K+ + IK G D+
Sbjct: 531 DTVINFDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKAAIKHSAGADQ 585
>gi|403347814|gb|EJY73340.1| hypothetical protein OXYTRI_05530 [Oxytricha trifallax]
Length = 508
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 144/307 (46%), Gaps = 44/307 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ L+ L + AL+ P +VI TPG M L+ +K F LK L+ D
Sbjct: 154 IGLRTAVLVGGLDMVSQAIALSKNPHVVIGTPGRMADHLAN----TKGFHLKKLKFLIFD 209
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LLS +E + + IP+ L SAT +S V KL++ L++P + +
Sbjct: 210 EADRLLSMDFEKQINLILTQIPKSRNTYLFSATMTSKVQKLQRASLNDPVKIEVSSKYKT 269
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
D ++ Q +I E+ K Y++ LL + +K +IFT T + + +L L L
Sbjct: 270 VDTLV-----QNYIFIPEKHKETYLVYLLT-QFAGQKMIIFTTTCNQSMKLALILRNLNF 323
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
K+ +N +L Q RL L +F A + LIATD
Sbjct: 324 KAVNINGQLTQTQRLSALNKFKANERNILIATDVAS------------------------ 359
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RG+D V VINF++PQ++ YVHR+GRT RA TG +++ V+ +++ F
Sbjct: 360 ---------RGLDIPEVDFVINFDIPQHSKDYVHRVGRTARAGKTGKAITFVTQYDVETF 410
Query: 310 EEIKSFV 316
++I+ +
Sbjct: 411 QKIEQLI 417
>gi|429332725|ref|ZP_19213437.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida CSV86]
gi|428762481|gb|EKX84684.1| DEAD-box ATP dependent DNA helicase [Pseudomonas putida CSV86]
Length = 589
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 140/292 (47%), Gaps = 59/292 (20%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
A+A D+++A PG + G + ++ILVLDEAD +L G+ D+K + A
Sbjct: 84 AMARGVDVLVACPGRLLDLAGQGSVDLSH----VEILVLDEADRMLDMGFIHDVKKVLAR 139
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FW 142
+P Q LL SAT S D+ L +LHNP + EV P N ++Q F
Sbjct: 140 LPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPPNTTVERIEQRVFR 189
Query: 143 ISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ S + LL +++T E V L+FT T A RL +LEK G+ +A ++ QN
Sbjct: 190 LPASHKRALLAHLITAGAWEQV----LVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQN 245
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+R L +F +G ++ATD RG+
Sbjct: 246 ARTKALADFKSGAVRIMVATDI---------------------------------AARGL 272
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 273 DIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 324
>gi|225561576|gb|EEH09856.1| ATP-dependent RNA helicase DRS1 [Ajellomyces capsulatus G186AR]
Length = 829
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 102/368 (27%), Positives = 174/368 (47%), Gaps = 60/368 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 427 PDVIIATPGRFIDHMR----NSASFTVDTLEILVLDEADRMLEDGFTDELNEILTTIPKS 482
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +++VDKL ++ L+ P L + D K + + +Q+F E +L
Sbjct: 483 RQTMLFSATMTNNVDKLIRVGLNRPVRLMV----DAKKQTVGTLIQEFVRLRPGREEKRL 538
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ L K + + + ++F + A R+++ G+K L+ + Q R+ +E F
Sbjct: 539 GYLIVLCK-NIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFR 597
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD RG+D K V TVIN
Sbjct: 598 DGKVSFLLATDVAS---------------------------------RGLDIKGVETVIN 624
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
+E PQ+ Y+HR+GRT RA +G + +L + + K+ +K+ V + + I++
Sbjct: 625 YEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV---VKAAVKTGRAQGAKIVSRLI 681
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
A E+ ++ A+ + LR E + +A EV + +LL H
Sbjct: 682 ETA----EADKWAAKVEEMQEEVQEI-------LREEKEEKQLAQAEMEVT-RGSNLLNH 729
Query: 392 DKDLSKKP 399
+K++ +P
Sbjct: 730 EKEIMSRP 737
>gi|308497817|ref|XP_003111095.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
gi|308240643|gb|EFO84595.1| hypothetical protein CRE_03900 [Caenorhabditis remanei]
Length = 749
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 166/357 (46%), Gaps = 48/357 (13%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+QL+V + AAL PD+V+ATPG + L S +F+ S+++LVLD
Sbjct: 253 IQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRLIDHLHN----SPNFNLGSIEVLVLD 308
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD +L + D + L + Q LL SAT + ++D+L + L P + + E D
Sbjct: 309 EADRMLEEAFRDQMNELIRLCAENRQTLLFSATMTEEIDELASMSLQRPVKIFINENTDT 368
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
++ + ++ ++R+ ++ L Q ++F T R+++ L GI
Sbjct: 369 ALKLRQEFIRIRAGRETDRESMVAALVTRTF---QTNTIVFVRTKKDCQRMQILLGLLGI 425
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
K + + L Q R+ L +F G D L++TD
Sbjct: 426 KVGQMQSSLTQGQRIESLSKFKKGEIDVLVSTD--------------------------- 458
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
L S RG+D + V TVIN MP++ Y+HR+GRT RA G S+SLV +E K+
Sbjct: 459 -LAS-----RGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLVGEEERKLL 512
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLR 366
+EI N +++ L+A VE+ R R +D+ +++ +I + ++LR
Sbjct: 513 KEIV-------NSNADRTLKQRLVAPEVVEAYRSRIDDLEETIQQIDEEDRAEKELR 562
>gi|398910426|ref|ZP_10655027.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|398185779|gb|EJM73170.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
Length = 621
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 59/289 (20%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++A PG + G + ++ILVLDEAD +L G+ D+K + A +P Q
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSH----VEILVLDEADRMLDMGFVHDVKKVLARLPAKRQ 186
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FWISCSER 148
LL SAT S D+ L +LHNP + EV P N ++Q F ++ S +
Sbjct: 187 NLLFSATFSKDITDLAGKLLHNPERI----------EVTPPNTTVERIEQRVFRLAASHK 236
Query: 149 DKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
LL +++T E V L+FT T A RL +L+K G+ + ++ QN+R L
Sbjct: 237 RSLLAHLITAGAWEQV----LVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKAL 292
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG L+ATD RG+D +
Sbjct: 293 ADFKAGTVRILVATDI---------------------------------AARGLDIDQLP 319
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 320 HVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMT 368
>gi|398923409|ref|ZP_10660668.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398175330|gb|EJM63091.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
Length = 624
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 59/289 (20%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++A PG + G + ++ILVLDEAD +L G+ D+K + A +P Q
Sbjct: 131 DVLVACPGRLLDLAGQGSVDL----SHVEILVLDEADRMLDMGFVHDVKKVLARLPAKRQ 186
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FWISCSER 148
LL SAT S D+ L +LHNP + EV P N ++Q F ++ S +
Sbjct: 187 NLLFSATFSKDITDLAGKLLHNPERI----------EVTPPNTTVERIEQRVFRLAASHK 236
Query: 149 DKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
LL +++T E V L+FT T A RL +L+K G+ + ++ QN+R L
Sbjct: 237 RSLLAHLITAGAWEQV----LVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKAL 292
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG L+ATD RG+D +
Sbjct: 293 ADFKAGTVRILVATDI---------------------------------AARGLDIDQLP 319
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 320 HVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMT 368
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSGEIKKLAATYLRNPQTIEV-----ARSNSTATNVTQVVYEVAEGDKTGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ G+ + ++ + QN R+ L+ F G
Sbjct: 250 QLIR-ERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 138/284 (48%), Gaps = 43/284 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + +++LVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKARQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLAATYLTNPQTIEV-----ARSNATATNVTQIVYDIAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL LE+ G+ + ++ + QN R+ LE F G
Sbjct: 250 KLIR-DRALKQVIVFCNSKIGASRLARLLERDGVVATAIHGDRSQNERMQALEAFKRGEV 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
+A YVHRIGRTGRA +G ++SL SP+E K +I+ + D
Sbjct: 336 FSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRD 379
>gi|104783960|ref|YP_610458.1| DEAD/DEAH box helicase [Pseudomonas entomophila L48]
gi|95112947|emb|CAK17675.1| ATP-dependent RNA helicase RhlE, DEAD box family [Pseudomonas
entomophila L48]
Length = 634
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 141/292 (48%), Gaps = 59/292 (20%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
A+A D+++A PG + G S S ++ILVLDEAD +L G+ D+K + A
Sbjct: 125 AMAKGVDVLVACPGRLLDLAGQG---SVDLS-RVEILVLDEADRMLDMGFIHDVKKVLAR 180
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FW 142
+P Q LL SAT S D+ L +LHNP + EV P N ++Q +
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPPNTTVERIEQRVYR 230
Query: 143 ISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ S + LL +++TL E V L+FT T A RL +LEK G+ +A ++ QN
Sbjct: 231 LPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQN 286
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+R L +F A L+ATD RG+
Sbjct: 287 ARTKALADFKANTVRVLVATDI---------------------------------AARGL 313
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
D + V+NFE+P YVHRIGRTGRA +G ++S+V+PDE K+ + I+
Sbjct: 314 DIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKLLKSIE 365
>gi|393759582|ref|ZP_10348395.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393162143|gb|EJC62204.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 414
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 144/288 (50%), Gaps = 53/288 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+IVIATPG + + + S ILVLDEAD +L G+ DL + +++P+ Q
Sbjct: 96 EIVIATPGRLLDHIDQRTINLSQVS----ILVLDEADRMLDMGFLPDLDRIVSLLPKNRQ 151
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ KL + L++P V+ EV +N V Q S DK
Sbjct: 152 GLLFSATFSKEIRKLARTFLNDP----------VEIEVAARNATASTVTQVVYPMSAEDK 201
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K + + + ++F+NT A +L +LE+ GIK+ ++ Q R+ +L+ F
Sbjct: 202 RRAVVHLVKTKKL-TQTIVFSNTKIGAGQLARYLEREGIKAESIHGNKSQLERMKVLDAF 260
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G D L+ATD RG+D + VI
Sbjct: 261 KSGTVDVLVATDVA---------------------------------ARGLDVAGMPCVI 287
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
N ++P NA YVHRIGRTGRA +G +++L++PDE + +EI+ +G+
Sbjct: 288 NVDLPYNAEDYVHRIGRTGRAGASGEAIALMAPDEEHLLQEIEKLIGN 335
>gi|398849062|ref|ZP_10605837.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
gi|398245455|gb|EJN30975.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM84]
Length = 631
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 140/292 (47%), Gaps = 59/292 (20%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
A+A D+++A PG + G K ++ILVLDEAD +L G+ D+K + A
Sbjct: 125 AIAKGVDVLVACPGRLLDLAGQG----KVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FW 142
+P Q LL SAT S D+ L +LHNP + EV P N ++Q +
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPPNTTVERIEQRVYR 230
Query: 143 ISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ S + LL +++TL E V L+FT T A RL +LEK G+ +A ++ QN
Sbjct: 231 LPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQN 286
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+R L +F A L+ATD RG+
Sbjct: 287 ARTKALADFKANAVRVLVATDI---------------------------------AARGL 313
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 314 DIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 365
>gi|170719671|ref|YP_001747359.1| DEAD/DEAH box helicase [Pseudomonas putida W619]
gi|169757674|gb|ACA70990.1| DEAD/DEAH box helicase domain protein [Pseudomonas putida W619]
Length = 630
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 140/292 (47%), Gaps = 59/292 (20%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
A+A D+++A PG + G + ++ILVLDEAD +L G+ D+K + A
Sbjct: 125 AIAKGVDVLVACPGRLLDLAGQGRVDLAH----VEILVLDEADRMLDMGFIHDVKKVLAR 180
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FW 142
+P Q LL SAT S D+ L +LHNP + EV P N ++Q +
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPPNTTVERIEQRVYR 230
Query: 143 ISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ S + LL +++TL E V L+FT T A RL +LEK G+ +A ++ QN
Sbjct: 231 LPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKHGLSAAAIHGNKSQN 286
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+R L +F A L+ATD RG+
Sbjct: 287 ARTKALADFKANSVRVLVATDI---------------------------------AARGL 313
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 314 DIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 365
>gi|331005215|ref|ZP_08328608.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
gi|330420958|gb|EGG95231.1| ATP-dependent RNA helicase RhlE [gamma proteobacterium IMCC1989]
Length = 464
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 143/291 (49%), Gaps = 53/291 (18%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L G DI+IATPG + L + SF + L+IL+LDEAD +L G+ +D++ + +
Sbjct: 120 LRGGVDILIATPG---RLLDLHQQNAMSF-NKLEILILDEADRMLDMGFINDIRKILKAL 175
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISC 145
P Q L+ SAT S D+ L K I++ P ++ V PKN V Q WI
Sbjct: 176 PEKRQNLMFSATFSDDIRDLAKTIVNKP----------IEISVTPKNSTATTVTQ-WIHP 224
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
++ + +L L + ++ L+F+ T A +L FLEK IK+A ++ Q +R
Sbjct: 225 VDKKQKPSLLVELIYQHKWEQVLVFSRTKHGANKLATFLEKHSIKAAAIHGNKSQGARTR 284
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
L +F AG L+ATD RG+D +
Sbjct: 285 ALADFKAGKVRVLVATDIA---------------------------------ARGLDIEQ 311
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ V+N ++P A YVHRIGRTGRA TG +VSLVS DE++ ++I+ +
Sbjct: 312 LPQVVNIDLPNVAEDYVHRIGRTGRAGATGQAVSLVSADEIQQLQDIERLI 362
>gi|295664398|ref|XP_002792751.1| ATP-dependent RNA helicase drs1 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278865|gb|EEH34431.1| ATP-dependent RNA helicase drs1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 835
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 142/277 (51%), Gaps = 45/277 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 435 PDVIIATPGRFIDHMR----NSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 490
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT ++ +DKL ++ L+ P L + + + + + VQ+F E +L
Sbjct: 491 RQTMLFSATMTNTIDKLIRVGLNRPVRLMV----NAQKQTVGTLVQEFVRLRPGREDKRL 546
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++TL K + + + +IF A R+++ FG+K+A L+ + Q R+ +E F
Sbjct: 547 GYLVTLCKT-VYKDRVIIFFRAKKEAHRVRIIFGLFGLKAAELHGSMSQEQRIKSVESFR 605
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD L S RG+D K V TVIN
Sbjct: 606 DGKVSFLLATD----------------------------LAS-----RGLDIKGVETVIN 632
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 633 YEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 669
>gi|315043240|ref|XP_003170996.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
gi|311344785|gb|EFR03988.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
Length = 814
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 145/298 (48%), Gaps = 44/298 (14%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ ++L + IP+
Sbjct: 421 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKS 476
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT ++ VDKL ++ L+ P L + D K + + VQ+F + DK L
Sbjct: 477 RQTMLFSATMTNSVDKLIRVGLNKPVRLMV----DSKKQTVGTLVQEFVRLRPGREDKRL 532
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L + + ++F A R+++ G+K+A L+ + Q R+ +E+F
Sbjct: 533 GYLMFLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRD 592
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
YL+ATD L S RG+D K V TVIN+
Sbjct: 593 AKVSYLLATD----------------------------LAS-----RGLDIKGVETVINY 619
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAP 329
E PQ+ Y+HR+GRT RA +G + ++ + PD + E +K+ S +I P
Sbjct: 620 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKAGRAQGAKIVSRVIEP 677
>gi|407860297|gb|EKG07320.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 592
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 132/498 (26%), Positives = 232/498 (46%), Gaps = 60/498 (12%)
Query: 4 IELCKGQVQL------------KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLST 51
+ELC+ V++ V LTS + R A A P I++ T + K +
Sbjct: 98 VELCEQTVEVVTALAKYVRPRVMVDNLTSRGVVTKARVA-AAP--ILVTTAALLGKHCRS 154
Query: 52 GVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK 111
G + ++ + +L+ +V+DE D ++S E L+A+ +V+P Q +L SAT + V +K
Sbjct: 155 GTVTAEDLA-TLRCVVIDEVDFVISIA-EGSLRAVQSVLPPSVQTILSSATLTDGVVHIK 212
Query: 112 KLILHNPYILTL---------PEVGDVKDEVIPKNVQQFWISCSERDKLLYILT------ 156
+LHNP +TL P G+ + V+ + + I+ ER + Y++
Sbjct: 213 SQLLHNPVTITLSTDDENEMTPTEGE--NIVVESRITKKGINSEERLRHYYLVATDECHH 270
Query: 157 ------LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
L +L ++ K LIF N + ++++ FL + G+++ + ++ LP N R+ L F
Sbjct: 271 HTLLYALYRLGHIKGKTLIFVNEEEKTYKVQSFLAQLGVEALVYDSNLPLNVRVDTLHRF 330
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE----FGVVRGIDFKNV 266
G L+ TD T + + +++ ++ H K +E + RGIDF +V
Sbjct: 331 QVGSVGTLVCTDGTLESVDNLQESIPGAEAQATRMHSKKGKRTEDRHDGALQRGIDFSDV 390
Query: 267 HTVINFE-----MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE-MKIFEEIKSFVGDDE 320
V+ F+ + + Y HR+GR GRA G +++L + + ++ ++ +G
Sbjct: 391 RNVVLFDGIAHPTTSDFSRYTHRVGRAGRAGKGGMAITLFTVQQAQRVTRHLRRHLGATH 450
Query: 321 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 380
+ PF L + L+YR ++V S+T+ + R R + E+ S LK+H
Sbjct: 451 ----DTFEPFKQLRRQEAAKLQYRVDNVLFSITRSSTRRQRISSVAAELTRSAYLKSHM- 505
Query: 381 VNPKDLDLLKHDKDLSKKPPA--SHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRR 438
+ KD +L+ SKK + L DVP Y+ A K K RA +K+SS
Sbjct: 506 -SQKDEAVLQRILSRSKKTAKCDTTLLDVPHYMHIEGADSAEKYRKRVRARTSSKSSSAS 564
Query: 439 QGPRRKFRKSDPLKSFSA 456
Q PR + R DPL ++
Sbjct: 565 QQPRTRSR--DPLSRVAS 580
>gi|154282923|ref|XP_001542257.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
gi|150410437|gb|EDN05825.1| 2-isopropylmalate synthase [Ajellomyces capsulatus NAm1]
Length = 1466
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 176/368 (47%), Gaps = 60/368 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 427 PDVIIATPGRFIDHMR----NSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 482
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +++VDKL ++ L P L + D K + + +Q+F E +L
Sbjct: 483 RQTMLFSATMTNNVDKLIRVGLSRPVRLMV----DAKKQTVGTLIQEFVRLRPGREEKRL 538
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ L K + + + ++F + A R+++ G+K L+ + Q R+ +E F
Sbjct: 539 GYLIVLCK-NIYKDRVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFR 597
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD RG+D K V TVIN
Sbjct: 598 DGKVSFLLATDVAS---------------------------------RGLDIKGVETVIN 624
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
+E PQ+ A Y+HR+GRT RA +G + +L + + K+ +K+ V + + I++
Sbjct: 625 YEAPQSHAIYLHRVGRTARAGRSGRACTLAAEPDRKV---VKAAVKTGRAQGAKIVS--- 678
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
L + A E+ ++ A+ + LR E + +A EV + +LL H
Sbjct: 679 RLIETA-EADKWAAKVEEMQEEVQEI-------LREEKEEKQLAQAEMEVT-RGSNLLNH 729
Query: 392 DKDLSKKP 399
+K++ +P
Sbjct: 730 EKEIMSRP 737
>gi|407803800|ref|ZP_11150632.1| ATP-dependent RNA helicase [Alcanivorax sp. W11-5]
gi|407022210|gb|EKE33965.1| ATP-dependent RNA helicase [Alcanivorax sp. W11-5]
Length = 586
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 152/334 (45%), Gaps = 49/334 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L+VV L M AL +VI TPG + L G L+ D+L+ LVLDEAD
Sbjct: 108 LRVVTLCGGMDYRPQTRALREGVQVVIGTPGRVVDHLKRGTLKL----DALRCLVLDEAD 163
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+L G+ DD++ + P CQ L+SAT + KL + L +P +T+
Sbjct: 164 EMLRMGFIDDVEWVMEQTPAACQVALLSATMPPPIRKLAQRFLKSPQEITV-----ATKT 218
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
++Q ++ ++RDKL ++ +L+ E ++F T + L FL++ G ++
Sbjct: 219 ATVAAIRQRYLFINQRDKLDALVRVLETETF-DGVILFARTKESTVELADFLQRAGFRAT 277
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
LN ++ Q R ++E+ G D L+ATD
Sbjct: 278 ALNGDMAQPHREQVVEQIKGGRIDILVATDV----------------------------- 308
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
V RG+D + V+N+++P + YVHRIGRTGRA G ++ V+P E ++ + I
Sbjct: 309 ----VARGLDVPRISMVLNYDIPFDGETYVHRIGRTGRAGREGDAILFVTPREKRMLQNI 364
Query: 313 KSFVGDDENEDSNIIAPFPLLAQ-NAVESLRYRA 345
+ E + P AQ N V R++A
Sbjct: 365 ERLTRQKVEEMA-----LPTSAQINVVRKTRFKA 393
>gi|224825987|ref|ZP_03699090.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601624|gb|EEG07804.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 562
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 143/291 (49%), Gaps = 43/291 (14%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
AAL P DI++ATPG + L ++ S ++ILVLDEAD +L G+ D+K + A
Sbjct: 121 AALRKPLDILVATPG---RLLDHAGQKTVDLS-GVEILVLDEADRMLDMGFIHDIKKVLA 176
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
++P Q LL SAT S ++ L +L+NP ++ + + +E++ + V +R
Sbjct: 177 LLPAKRQNLLFSATFSDEIKVLADRLLNNPQLVEVARR-NTANELVEQKVH-----LVDR 230
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
DK +LT L + + L+FT T A RL L+K GI +A ++ QN+R L
Sbjct: 231 DKKTELLTHLISQGDWHQVLVFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNARTKALA 290
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +
Sbjct: 291 DFKANTLQVLVATDI---------------------------------AARGLDIDQLPH 317
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
V+NFE+P YVHRIGRTGRA N G +VSLV DE K ++I+ + D
Sbjct: 318 VVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLVCVDEFKFLKDIEKLIKKD 368
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 165 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 220
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 221 TLLFSATFSGEIKKLAATYLRNPQTIEV-----ARSNSTATNVTQIVYEVAEGDKTGAVV 275
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ G+ + ++ + QN R+ L+ F G
Sbjct: 276 QLIR-ERNLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEI 334
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 335 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 361
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 362 FNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQLADIEKLI 402
>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
2-40]
gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
Length = 516
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 142/291 (48%), Gaps = 53/291 (18%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L G DI++ATPG + + Q D L++LVLDEAD +L G+ D++ + A++
Sbjct: 141 LRGGVDILVATPGRLMDLYN----QRAVKFDQLEMLVLDEADRMLDMGFIHDIRKIMAIL 196
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISC 145
P+ Q L+ SAT S D+ +L K I++NP +T V P N V+Q+
Sbjct: 197 PKKRQNLMFSATFSQDIRELAKSIVNNPVEIT----------VNPPNSTATRVKQWICPV 246
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
+++K + L+K Q + L+F+ T A +L LE G+++A ++ Q +R
Sbjct: 247 DKKEKPALLTHLIKTNKWQ-QVLVFSRTKHGANKLVKQLEGSGLRAAAIHGNKSQGARTK 305
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
L EF G L+ATD RG+D
Sbjct: 306 ALAEFKNGTVKILVATDI---------------------------------AARGLDIDQ 332
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ V+NF++PQ A YVHRIGRTGRA G +VSLVS DE ++ +EI+
Sbjct: 333 LPQVVNFDLPQVAEDYVHRIGRTGRAGAEGNAVSLVSADEFQMLKEIERLT 383
>gi|78485124|ref|YP_391049.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78363410|gb|ABB41375.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 445
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 136/285 (47%), Gaps = 51/285 (17%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + ++ D L+ILVLDEAD +L G+ D+K + +P+ Q
Sbjct: 125 DILVATPGRLLDLFNQNAIKF----DQLEILVLDEADRMLDMGFIHDIKRILKALPKNRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF----WISCSERDKL 151
LL SAT S+++ +L K +++NP V+ V P+N WI ++ +
Sbjct: 181 NLLFSATFSNEIRQLAKGLVNNP----------VEISVTPRNTTATTVTQWIYPVDKGRK 230
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+LT L E + LIF+ T A RL LE GIK+A ++ Q +R L F
Sbjct: 231 AALLTKLIKENDWSQVLIFSRTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFK 290
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G L+ATD RGID + V+N
Sbjct: 291 DGTVQALVATDI---------------------------------AARGIDIDQLPHVVN 317
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
F++P A YVHRIGRTGRA G +VSLVS DE+K I++ +
Sbjct: 318 FDLPNVAEDYVHRIGRTGRAGAVGEAVSLVSADEVKELAGIENLI 362
>gi|269469155|gb|EEZ80700.1| ATP-dependent RNA helicase RhlE [uncultured SUP05 cluster
bacterium]
Length = 434
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 138/286 (48%), Gaps = 43/286 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L G DI++ATPG + S ++ D L+I+V DEAD +L G+ D+K + V+
Sbjct: 120 LRGGVDILVATPGRLLDLYSQNAVKF----DQLEIIVFDEADRMLDMGFIHDIKRILKVL 175
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 150
P Q L+ SAT S ++ KL K ++HNP EV K+V+Q WI ++ K
Sbjct: 176 PPKRQTLMFSATFSDEIRKLAKSLVHNPV-----EVSTTPRNTTVKSVKQ-WIHPVDKSK 229
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+LT L + + L+F+ T A R+ L K GI +A ++ Q +R L +F
Sbjct: 230 KQALLTKLIKDHSWYQVLVFSRTKHGANRIATQLGKRGITAAAIHGNKSQGARTRALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G + L+ATD RGID + V+
Sbjct: 290 KDGKVNVLVATDIA---------------------------------ARGIDIIELPHVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA + G ++SLVS DE+K +I+ +
Sbjct: 317 NFDLPHVPEDYVHRIGRTGRAGSKGEAISLVSADEVKQLFDIERLI 362
>gi|388580558|gb|EIM20872.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 801
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 181/384 (47%), Gaps = 63/384 (16%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLK 64
LC G + LK+ + L PD+VIATPG L V S SF+ D+L
Sbjct: 313 LCVGGLSLKLQE-----------QQLKQRPDVVIATPGR----LIDHVRNSPSFTLDALD 357
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
IL++DEAD +L G++D+L + P+ Q +L SAT + VD+L +L L+ P L +
Sbjct: 358 ILIMDEADRMLEDGFKDELDEIVKECPKNRQTMLFSATMTDKVDELVRLSLNKPVRLFV- 416
Query: 125 EVGDVKDEVIPKNVQQF--WISCSERDKLLYILTLLKL--ELVQKKALIFTNTIDMAFRL 180
D K Q+F S S+ D TLL L +++ +IF + +A R+
Sbjct: 417 ---DPKKSTAKGLTQEFVRIRSNSKNDLKERTATLLSLCRRTFKQRTIIFFRSKALAHRM 473
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
++ + + L+ +L Q RL+ LE F DYL+ATD
Sbjct: 474 RIMFGLMELNAEELHGDLSQEQRLNALERFKNQKSDYLLATD------------------ 515
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
L S RG+D K V TVINF++P Y+HR+GRT RA +G SVSL
Sbjct: 516 ----------LAS-----RGLDIKGVETVINFDLPNQIEIYLHRVGRTARAGTSGRSVSL 560
Query: 301 VSPDEMKIFEEI-KSFVGDDENEDSNIIAPFPLLAQNA--VESLRYRAEDVAKSVTK--- 354
+ + K+ + I K + + I P +L+ A VESL+ + +++ K +
Sbjct: 561 IGETDRKMLKNIVKRSSAQSTDSIKHRIVPTDVLSDVAELVESLQDQIDEILKEEKEDRA 620
Query: 355 IAVRESRAQDLRNEILNSEKLKAH 378
I V E Q +N I + +++K+
Sbjct: 621 IRVAEMELQKSKNMIEHEDEIKSR 644
>gi|367049970|ref|XP_003655364.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
gi|347002628|gb|AEO69028.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
Length = 755
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 146/297 (49%), Gaps = 48/297 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD+VIATPG + S SF+ D ++ILVLDEAD +L G+ D+L + +P+
Sbjct: 354 PDVVIATPGRFIDHMRN----SASFAVDRVEILVLDEADRMLEDGFADELNEILTTLPKS 409
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD L ++ L+ P + + D + Q+F E ++
Sbjct: 410 RQTMLFSATMTSSVDNLIRVGLNKPVRIMV----DSQKATAGTLTQEFVRLRPGREEKRM 465
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ + K L K+ +IF +A R ++ G+ A L+ + Q R+ +E+F
Sbjct: 466 GYLVHICKT-LYTKRVIIFFRQKKVAHRARIIFGLLGLSCAELHGSMSQTQRIGSVEDFR 524
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G DYL+ATD L S RG+D K V TVIN
Sbjct: 525 DGKVDYLLATD----------------------------LAS-----RGLDIKRVDTVIN 551
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
+E PQN YVHR+GRT RA +G +++L + + K+ +K+ V + + S I++
Sbjct: 552 YEAPQNLEIYVHRVGRTARAGRSGVAITLAAEPDRKV---VKAAVKAGKAQGSKIVS 605
>gi|395445827|ref|YP_006386080.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida ND6]
gi|388559824|gb|AFK68965.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida ND6]
Length = 533
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 140/292 (47%), Gaps = 59/292 (20%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
A+A D+++A PG + G K ++ILVLDEAD +L G+ D+K + A
Sbjct: 31 AIAKGVDVLVACPGRLLDLAGQG----KVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 86
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FW 142
+P Q LL SAT S D+ L +LHNP + EV P N ++Q +
Sbjct: 87 LPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPPNTTVERIEQRVYR 136
Query: 143 ISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ S + LL +++TL E V L+FT T A RL +LEK G+ +A ++ QN
Sbjct: 137 LPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQN 192
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+R L +F A L+ATD RG+
Sbjct: 193 ARTKALADFKANSVRVLVATDI---------------------------------AARGL 219
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 220 DIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 271
>gi|162451888|ref|YP_001614255.1| hypothetical protein sce3615 [Sorangium cellulosum So ce56]
gi|161162470|emb|CAN93775.1| unnamed protein product [Sorangium cellulosum So ce56]
Length = 812
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 144/294 (48%), Gaps = 44/294 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+KVV + P ALA +++ TPG + L G + +K +++LVLDE D
Sbjct: 126 IKVVAVYGGAPMQRQIDALAAGAQVIVGTPGRVLDHLRRGTIVAKH----IRLLVLDECD 181
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+LS G+E +L A+ A +P Q LL SAT D++++ + L +P +TL D
Sbjct: 182 EMLSMGFERELTAILAELPPERQTLLFSATLPPDIERIARSKLRSPEFITL-----SGDA 236
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V +Q + + DKL ++ ++++E + A+IF NT D + L++ G +
Sbjct: 237 VGALQIQHY-VYLITGDKLTSLVRIIEVE-NPENAVIFCNTKDETEAVAGALKRQGYDAD 294
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
LN +LPQ+ R ++ G +L+ATD
Sbjct: 295 WLNGDLPQSDREKVMSATREGRLRFLVATDV----------------------------- 325
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
RGID ++ VIN++ PQ+A YVHR GRTGRA TG +++L++P ++
Sbjct: 326 ----AARGIDISHLTHVINYDFPQDAEAYVHRTGRTGRAGRTGTAIALITPQDV 375
>gi|224089124|ref|XP_002308641.1| predicted protein [Populus trichocarpa]
gi|222854617|gb|EEE92164.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 143/294 (48%), Gaps = 54/294 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IV+ TPG + LS +K FS +LK L+LDEAD LL+ +E L +
Sbjct: 128 ALAKRPHIVVGTPGRLLDHLS----NTKGFSLRTLKYLILDEADRLLNEEFEKSLDEILT 183
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK-----NVQQFWI 143
VI R + L SAT + V KL++ L NP VK EV K ++Q +
Sbjct: 184 VISRDRKTYLFSATMTKKVRKLQRACLRNP----------VKIEVASKYSVVETLRQQLL 233
Query: 144 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
C + K Y++ L L+ ++FT T D L L L G+++ +N + Q+ R
Sbjct: 234 FCPAKYKECYLVHALTLK-SGASTMVFTRTCDATHFLALVLRNLGLRAIPINGHMSQSKR 292
Query: 204 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 263
L L +F AG + LI TD RG+D
Sbjct: 293 LGALNKFKAGECNILICTDVAS---------------------------------RGLDI 319
Query: 264 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+V V+N+++P N+ Y+HR+GRT RA +G ++SLV+ +E+ F++I++ +G
Sbjct: 320 PSVDMVVNYDIPTNSKDYIHRVGRTARAGRSGLAISLVNQNEIGWFKQIENLIG 373
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 118/394 (29%), Positives = 175/394 (44%), Gaps = 65/394 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL PDIV+ATPG M L QS + L ILVLDEAD LL G+ +++ L +
Sbjct: 232 ALRTHPDIVVATPGRMIDHLRN--TQSVGLEE-LAILVLDEADRLLELGFREEIHELVKL 288
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEV---GDVKDEVIPKNVQQFWISC 145
P Q +L SAT + +V +L KL L +P L+ P + +EVI +
Sbjct: 289 CPSRRQTMLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIR------AG 342
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
E DK +L+L L + K +IF+ T A RLK+ G+KSA L+ L Q RL
Sbjct: 343 HEEDKEAIVLSLCSRSL-KSKTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLE 401
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
LE F D+LIATD RG+D
Sbjct: 402 ALEAFRKQEVDFLIATD---------------------------------VAARGLDIIG 428
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSN 325
V +VIN E P+ YVHR+GRT RA G SV+L++ + + + + G +
Sbjct: 429 VESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDRLLLKAVAKRAGSKLQKR-- 486
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
++A ++ S R R E + + + +I +E + LR KA E N K
Sbjct: 487 ------VVAATSIASWRERIEKMEEDLVQILQQEREEKFLR---------KAEMEAN-KA 530
Query: 386 LDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEA 419
+++ ++ ++ +P + + D AK A
Sbjct: 531 QNMMDYEAEIFARPKKTWFQSQQDKTRIAKVSPA 564
>gi|302499800|ref|XP_003011895.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
gi|291175449|gb|EFE31255.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
Length = 814
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 141/283 (49%), Gaps = 44/283 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ ++L + IP+
Sbjct: 419 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKS 474
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT ++ VDKL ++ L+ P L + D K + + VQ+F + DK L
Sbjct: 475 RQTMLFSATMTNSVDKLIRVGLNKPVRLMV----DSKKQTVGTLVQEFVRLRPGREDKRL 530
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L + + ++F A R+++ G+K+A L+ + Q R+ +E+F
Sbjct: 531 GYLMFLCKTVYTNRVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRD 590
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
YL+ATD L S RG+D K V TVIN+
Sbjct: 591 AKVSYLLATD----------------------------LAS-----RGLDIKGVETVINY 617
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 314
E PQ+ Y+HR+GRT RA +G + ++ + PD + E +K+
Sbjct: 618 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKA 660
>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
Length = 638
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 149/321 (46%), Gaps = 67/321 (20%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLK 64
LC G + LK+ + A L PD++IATPG L V S SF + ++
Sbjct: 183 LCVGGLSLKLQE-----------AELKTRPDVIIATPGR----LIDHVRNSASFGMEDVE 227
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
ILV+DEAD +L G+ED+L + + P+ Q +L SAT + DVD+L +L L P L +
Sbjct: 228 ILVMDEADRMLEDGFEDELNEIVRLCPKQRQTMLFSATMTEDVDQLVRLSLRTPVRLFV- 286
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKLL-------------YILTLLKLELVQKKALIFT 171
D K K Q+F + + +L IL L + + + +IF
Sbjct: 287 ---DPKRSTASKLTQEF-VRVRAQSRLTGHARQQAEDQHRAAILVTLCMRTFRDQVIIFV 342
Query: 172 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQ 231
+ +A +LK+ G+ +A L+ +L Q RL L F G D+L+ATD
Sbjct: 343 RSKKLAHQLKILFGLLGLSAAELHGDLSQEQRLQSLSLFRDGKVDFLLATD--------- 393
Query: 232 SDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 291
L S RGID + V TVIN++MP Y+HR+GRT RA
Sbjct: 394 -------------------LAS-----RGIDIRGVQTVINYDMPAQLEPYLHRVGRTARA 429
Query: 292 YNTGASVSLVSPDEMKIFEEI 312
G +V+LV + ++ + +
Sbjct: 430 GRQGRAVTLVGEPDRRLLKTV 450
>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160358660|sp|A7EML8.1|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 482
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 156/318 (49%), Gaps = 45/318 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+++K + M AL P I++ATPG + L +K FS SLK LV+D
Sbjct: 151 IRVKCAVIVGGMDMVPQAIALGKKPHIIVATPGRLLDHLEN----TKGFSLRSLKYLVMD 206
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL + L + V+PR + L SAT SS V+ L++ L +P ++ +
Sbjct: 207 EADRLLDLDFGPILDKILKVLPRERRTYLFSATISSKVESLQRASLKDPLRVS---ISSN 263
Query: 130 KDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
K + + +Q + +I +D Y++ LL E + A+IFT T++ R+ + L G
Sbjct: 264 KYQTVSTLIQNYIFIPLVHKDT--YLIYLLN-EFAGQSAIIFTRTVNETQRIAILLRTLG 320
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
+ L+ +L Q+SRL L +F AG + L+ATD
Sbjct: 321 FGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVA------------------------ 356
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D +V V+N++MPQ++ Y+HR+GRT RA +G ++S V+ +++I
Sbjct: 357 ---------ARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEI 407
Query: 309 FEEIKSFVGDDENEDSNI 326
+ I++ +G + E +
Sbjct: 408 WMRIEAALGKKQEEYQTV 425
>gi|358370127|dbj|GAA86739.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 832
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 142/298 (47%), Gaps = 44/298 (14%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 436 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 491
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VDKL ++ L+ P L + D K VQ+F + DK L
Sbjct: 492 RQTMLFSATMTDTVDKLIRVGLNRPVRLMV----DAKKNTAVTLVQEFVRLRPGREDKRL 547
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L EL + ++F A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 548 GYLLYLCKELYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFRE 607
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD L S RG+D K V TVIN+
Sbjct: 608 GKAAFLLATD----------------------------LAS-----RGLDIKGVETVINY 634
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAP 329
E PQ+ Y+HR+GRT RA +G + ++ + PD + +K+ S +I P
Sbjct: 635 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEP 692
>gi|302654026|ref|XP_003018826.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
gi|291182505|gb|EFE38181.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
Length = 814
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 141/283 (49%), Gaps = 44/283 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ ++L + IP+
Sbjct: 419 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKS 474
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT ++ VDKL ++ L+ P L + D K + + VQ+F + DK L
Sbjct: 475 RQTMLFSATMTNSVDKLIRVGLNKPVRLMV----DSKKQTVGTLVQEFVRLRPGREDKRL 530
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L + + ++F A R+++ G+K+A L+ + Q R+ +E+F
Sbjct: 531 GYLMFLCKTVYTNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRD 590
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
YL+ATD L S RG+D K V TVIN+
Sbjct: 591 AKVSYLLATD----------------------------LAS-----RGLDIKGVETVINY 617
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 314
E PQ+ Y+HR+GRT RA +G + ++ + PD + E +K+
Sbjct: 618 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKA 660
>gi|336315710|ref|ZP_08570618.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335880029|gb|EGM77920.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 485
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 143/289 (49%), Gaps = 45/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL G DI+ ATPG + LS L+ D +++LVLDEAD +L G+ DLK + A+
Sbjct: 121 ALRGGVDILTATPGRLLDLLSQNALKL----DQVQMLVLDEADRMLDMGFIRDLKKILAL 176
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEVGDVKDEVIPKNVQQFWISCSER 148
+P+ Q LL SAT S+++ L + +L NP ++ + PE + + K QQ ++ +
Sbjct: 177 LPKVRQNLLFSATFSNEIKGLTQGLLQNPLMIQVTPE-----NTTVEKIEQQVYL-LGKG 230
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K + L+ E ++ L+F T A RL L GI SA L+ QN+R L
Sbjct: 231 QKTAALCQLIT-ENKWQQVLVFMPTKHEANRLSEQLTFAGIPSAALHGNKSQNARTKALA 289
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RGID +
Sbjct: 290 DFKANELQVLVATDV---------------------------------AARGIDISQLPY 316
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF +P++ A YVHRIGRTGRA +G +VS V+PDE+ +++ +G
Sbjct: 317 VVNFALPRSPADYVHRIGRTGRAGKSGLAVSFVAPDEVPQLRQVERLIG 365
>gi|90414421|ref|ZP_01222398.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
gi|90324534|gb|EAS41090.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
3TCK]
Length = 464
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 137/286 (47%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + Q D L++LVLDEAD +L G+ D++ L AV+P+ Q
Sbjct: 125 DVLVATPGRLLDLYN----QRAVRFDQLEVLVLDEADRMLDMGFIRDIRKLLAVMPKQRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ +L K +++NP V+ V P+N V+Q WI ++ +
Sbjct: 181 NLLFSATFSDEIRQLAKGLVNNP----------VEISVTPRNATAPTVKQ-WICPVDKSR 229
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+LT L E + L+FT T A RL LE GIK+A ++ Q +R L F
Sbjct: 230 KANLLTKLLKENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+ L+ATD RG+D + + V+
Sbjct: 290 KSNEIQVLVATDIA---------------------------------ARGLDIEQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NFE+P A YVHRIGRTGRA G ++SLV DE K I+ +
Sbjct: 317 NFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAAIERLI 362
>gi|397693896|ref|YP_006531777.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida DOT-T1E]
gi|397330626|gb|AFO46985.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
putida DOT-T1E]
Length = 593
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 140/292 (47%), Gaps = 59/292 (20%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
A+A D+++A PG + G K ++ILVLDEAD +L G+ D+K + A
Sbjct: 91 AIAKGVDVLVACPGRLLDLAGQG----KVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 146
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FW 142
+P Q LL SAT S D+ L +LHNP + EV P N ++Q +
Sbjct: 147 LPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPPNTTVERIEQRVYR 196
Query: 143 ISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ S + LL +++TL E V L+FT T A RL +LEK G+ +A ++ QN
Sbjct: 197 LPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQN 252
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+R L +F A L+ATD RG+
Sbjct: 253 ARTKALADFKANSVRVLVATDI---------------------------------AARGL 279
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 280 DIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 331
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSGEIKKLAATYLRNPQTIEV-----ARSNSTATNVTQIVYEVAEGDKTGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ G+ + ++ + QN R+ L+ F G
Sbjct: 250 QLIR-ERNLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLFSPNEKKQLADIEKLI 376
>gi|389682761|ref|ZP_10174098.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis O6]
gi|388553352|gb|EIM16608.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis O6]
Length = 620
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 59/289 (20%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++A PG + G + ++ILVLDEAD +L G+ D+K + A +P Q
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSH----VEILVLDEADRMLDMGFVHDVKKVLARLPAKRQ 186
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FWISCSER 148
LL SAT S D+ L +LHNP + EV P N ++Q F ++ S +
Sbjct: 187 NLLFSATFSKDITDLAGKLLHNPERI----------EVTPPNTTVERIEQRVFRLAASHK 236
Query: 149 DKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
LL +++T E V L+FT T A RL +L+K G+ + ++ QN+R L
Sbjct: 237 RALLAHLITAGAWEQV----LVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKAL 292
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG L+ATD RG+D +
Sbjct: 293 ADFKAGEVRILVATDI---------------------------------AARGLDIDQLP 319
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 320 HVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMT 368
>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
Length = 431
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 43/283 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + Q D L++LVLDEAD +L G+ D+K + AV+P+ Q
Sbjct: 125 DVLVATPGRLLDLYN----QRAVKFDHLEVLVLDEADRMLDMGFIHDIKKILAVLPKKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S+D+ L K +++NP +++ + V Q WI ++++ +L
Sbjct: 181 NLLFSATFSNDIRGLAKGLVNNPVEISVSPANTTVESV------QHWIYPVDKNQKSKLL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L + + L+F+ T A +L L+ GI +A ++ Q +R L +F G
Sbjct: 235 IHLIQDNQWSQVLVFSRTKHGANKLAKQLDGAGINAAAIHGNKSQGARTKALADFKGGKV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + + V+NF++P
Sbjct: 295 QVLVATDIA---------------------------------ARGLDIEQLPHVVNFDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
YVHRIGRTGRA TG +VSLVS DE K +I+ +G+
Sbjct: 322 NVPEDYVHRIGRTGRAGATGEAVSLVSADEFKQLSDIERLIGE 364
>gi|255544624|ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 442
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 140/289 (48%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P IV+ATPG + LS +K FS +LK LVLDEAD LL+ +E L +
Sbjct: 127 ALGKRPHIVVATPGRLVDHLS----NTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILK 182
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + D + K +F + +
Sbjct: 183 VIPRERRTFLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTL--KQEYRFIPAKYKD 240
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
L+YILT E +++FT T D L L L G+++ +N + Q+ RL L
Sbjct: 241 CYLVYILT----EKSGSTSMVFTRTCDATTFLALVLRNLGLRAIPINGHMTQSKRLGALN 296
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F AG + LI TD RG+D +V
Sbjct: 297 KFKAGECNILICTDVAS---------------------------------RGLDIPSVDM 323
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ F +I+ +G
Sbjct: 324 VINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEVEWFIQIEKLIG 372
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 163/358 (45%), Gaps = 62/358 (17%)
Query: 30 ALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
AL PDIV+ATPG + LS G+ + L +++LDEAD LL G+ +++
Sbjct: 279 ALRSMPDIVVATPGRIIDHLRNSLSVGL-------EDLAVVILDEADRLLELGFSAEIQE 331
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQQF 141
L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+ +++
Sbjct: 332 LIRMCPKRRQTMLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVV--RIRRA 389
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
S E +L L L+ ++ +IF+ T A RLK+ G+K+A L+ L Q
Sbjct: 390 RESNQE-----AVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQA 444
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
RL LE F D+LIATD RGI
Sbjct: 445 QRLEALELFRKQEVDFLIATD---------------------------------VAARGI 471
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 472 DIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLK 531
Query: 322 EDSNIIAPFPLL-AQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 378
S I+A P+ +E L ED + + E A+ EI +E + AH
Sbjct: 532 --SRIVAEKPVAECAQLIEQL----EDQISIIIREEKVEREARKAEMEIAKAENMIAH 583
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 138/284 (48%), Gaps = 43/284 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + +++LVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKQRQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLSNPQTIEV-----ARSNATATNVTQVVYEIAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL LE+ G+ + ++ + QN R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQALDAFKRGEV 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
NA YVHRIGRTGRA +G ++SL SP+E K +I+ + D
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLIKRD 379
>gi|325273080|ref|ZP_08139385.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
TJI-51]
gi|324101781|gb|EGB99322.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
TJI-51]
Length = 630
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 140/292 (47%), Gaps = 59/292 (20%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
A+A D+++A PG + G K ++ILVLDEAD +L G+ D+K + A
Sbjct: 125 AIAKGVDVLVACPGRLLDLAGQG----KVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FW 142
+P Q LL SAT S D+ L +LHNP + EV P N ++Q +
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPPNTTVERIEQRVYR 230
Query: 143 ISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ S + LL +++TL E V L+FT T A RL +LEK G+ +A ++ QN
Sbjct: 231 LPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQN 286
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+R L +F A L+ATD RG+
Sbjct: 287 ARTKALADFKANSVRVLVATDI---------------------------------AARGL 313
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
D + V+NFE+P YVHRIGRTGRA +G ++S+V+PDE K+ + I+
Sbjct: 314 DIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKLLKSIE 365
>gi|26991657|ref|NP_747082.1| DEAD/DEAH box helicase [Pseudomonas putida KT2440]
gi|24986754|gb|AAN70546.1|AE016697_1 ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida
KT2440]
Length = 626
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 140/292 (47%), Gaps = 59/292 (20%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
A+A D+++A PG + G K ++ILVLDEAD +L G+ D+K + A
Sbjct: 125 AIAKGVDVLVACPGRLLDLAGQG----KVDLAHVEILVLDEADRMLDMGFIHDVKKVLAR 180
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FW 142
+P Q LL SAT S D+ L +LHNP + EV P N ++Q +
Sbjct: 181 LPAKRQNLLFSATFSKDITDLADKLLHNPERI----------EVTPPNTTVERIEQRVYR 230
Query: 143 ISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
+ S + LL +++TL E V L+FT T A RL +LEK G+ +A ++ QN
Sbjct: 231 LPASHKRALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQN 286
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+R L +F A L+ATD RG+
Sbjct: 287 ARTKALADFKANSVRVLVATDI---------------------------------AARGL 313
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
D + V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 314 DIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 365
>gi|421523635|ref|ZP_15970264.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
gi|402752621|gb|EJX13126.1| DEAD/DEAH box helicase [Pseudomonas putida LS46]
Length = 630
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 137/286 (47%), Gaps = 59/286 (20%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++A PG + G K ++ILVLDEAD +L G+ D+K + A +P Q
Sbjct: 131 DVLVACPGRLLDLAGQG----KVDLAHVEILVLDEADRMLDMGFIHDVKKVLARLPAKRQ 186
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FWISCSER 148
LL SAT S D+ L +LHNP + EV P N ++Q + + S +
Sbjct: 187 NLLFSATFSKDITDLADKLLHNPERI----------EVTPPNTTVERIEQRVYRLPASHK 236
Query: 149 DKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
LL +++TL E V L+FT T A RL +LEK G+ +A ++ QN+R L
Sbjct: 237 RALLAHLITLGAWEQV----LVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKAL 292
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F A L+ATD RG+D +
Sbjct: 293 ADFKANSVRVLVATDI---------------------------------AARGLDIDQLP 319
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 320 HVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIE 365
>gi|426201453|gb|EKV51376.1| hypothetical protein AGABI2DRAFT_114110 [Agaricus bisporus var.
bisporus H97]
Length = 754
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 125/452 (27%), Positives = 204/452 (45%), Gaps = 78/452 (17%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
I LC L V L+ +DLR+ PDIVIATPG L + S SFS D+
Sbjct: 296 IRLC-----LVVGGLSLKSQEADLRSR----PDIVIATPGR----LIDHIRNSASFSLDA 342
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
L ILV+DEAD +LS G+ D+L + PR Q +L SAT + VD+L ++ L P L
Sbjct: 343 LDILVIDEADRILSEGFSDELTEIIKSCPRSRQTMLFSATMTDSVDELVRVSLEKPVRLF 402
Query: 123 LPEVGDVKDEVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
+ D K +Q+F + E ++ ++TL + +++ ++F + +A ++
Sbjct: 403 V----DPKRTTARGLIQEFVRVRAGKEAERSAMLVTLCR-RTFKRRVIVFLRSKKLAHQM 457
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
++ G+K L+ +L Q RL L+ F D+L+ATD
Sbjct: 458 RIVFSLLGMKCEELHGDLSQEQRLRALQLFRDDAVDFLMATD------------------ 499
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
L S RG+D K V TVIN++MP A Y+HR+GRT RA G +V+L
Sbjct: 500 ----------LAS-----RGLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVTL 544
Query: 301 VSPDEMKIFE-EIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRE 359
V + K+ IK +D+ +L A++ + ++ +T +
Sbjct: 545 VGEADRKMLRAAIKHAAAEDQ-------VRHRVLPTEALQHWSDKLVELKDEITHV---- 593
Query: 360 SRAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHL-----RDVPDYLLDA 414
LR E + KA E+ K +L++H ++ +P + + +
Sbjct: 594 -----LREEKEEKQMRKAEMELK-KGQNLIEHQNEIFSRPARTWFQTGQEKKASQTISKN 647
Query: 415 KTQEACKMVKLARAAMGN-KNSSRRQGPRRKF 445
+ ++ K + +AA K+S+ R+ RRK
Sbjct: 648 EHEQGSKPTQRPKAAANTQKHSTTRKAKRRKI 679
>gi|433651795|ref|YP_007278174.1| DNA/RNA helicase, superfamily II [Prevotella dentalis DSM 3688]
gi|433302328|gb|AGB28144.1| DNA/RNA helicase, superfamily II [Prevotella dentalis DSM 3688]
Length = 579
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 44/284 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + +S G + S VLDEAD +L G+ +D+ +++ +P+ CQ
Sbjct: 128 DVIIATPGRLISHISMGNIDLSRVS----FFVLDEADRMLDMGFSEDIMKIASKLPKTCQ 183
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
++ SAT D++KL + +L NP ++ L + ++Q C E KL I
Sbjct: 184 TIMFSATMPKDIEKLAQSLLKNPAVVKLAVSKPA------EKIKQSAYICYETQKLEIIK 237
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ K + K+ ++F+ + + +++ I ++++L Q R I+ +F +G
Sbjct: 238 DIFKAGDL-KRVIVFSGSKQKVKHINQAMQRLHINCGEMHSDLEQAERDDIMFKFKSGQI 296
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
D L+ATD V RGID ++ VIN+++P
Sbjct: 297 DVLVATD---------------------------------IVARGIDIDDIAMVINYDVP 323
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
+A YVHRIGRT RA G ++++V+ D+M F +I+ F+ D
Sbjct: 324 HDAEDYVHRIGRTARAERDGVAITMVNEDDMFAFRQIEKFLEKD 367
>gi|310791457|gb|EFQ26984.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 772
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 45/299 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 369 PDVIIATPGRFIDHMRN----SASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 424
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VDKL +L ++ P + V K++ + VQ+F E ++
Sbjct: 425 RQTMLFSATMTSSVDKLVRLGMNKPARVM---VDSQKNKTVGTLVQEFVRLRPGREEKRM 481
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ + K + ++ ++F A R ++ G+ A L+ + Q R+ +E F
Sbjct: 482 GYLVHICKT-MHTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIASVENFR 540
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +YL+ATD L S RG+D K V TVIN
Sbjct: 541 DGKVNYLLATD----------------------------LAS-----RGLDIKGVDTVIN 567
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAP 329
+E PQN YVHR+GRT RA TG +++L + PD + +K+ S II P
Sbjct: 568 YEAPQNIEIYVHRVGRTARAGRTGIAITLAAEPDRKVVKAAVKAGKAQGAKIMSRIIEP 626
>gi|399010690|ref|ZP_10713052.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
gi|398106181|gb|EJL96229.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
Length = 618
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 59/289 (20%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++A PG + G + ++ILVLDEAD +L G+ D+K + A +P Q
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSH----VEILVLDEADRMLDMGFVHDVKKVLARLPAKRQ 186
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FWISCSER 148
LL SAT S D+ L +LHNP + EV P N ++Q F ++ S +
Sbjct: 187 NLLFSATFSKDITDLAGKLLHNPERI----------EVTPPNTTVERIEQRVFRLAASHK 236
Query: 149 DKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
LL +++T E V L+FT T A RL +L+K G+ + ++ QN+R L
Sbjct: 237 RALLAHLITAGAWEQV----LVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKAL 292
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG L+ATD RG+D +
Sbjct: 293 ADFKAGEVRILVATDI---------------------------------AARGLDIDQLP 319
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 320 HVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMT 368
>gi|395729578|ref|XP_003775574.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX56-like [Pongo abelii]
Length = 444
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 115/232 (49%), Gaps = 14/232 (6%)
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242
F E+ + +LN +LP R HI+ +FN G D +I TD G V+ +
Sbjct: 175 FEEELKSLTCVLNGDLPLLFRCHIISQFNQGFXDCVIETDAEVL--------GAPVNGKH 226
Query: 243 SKKHPKAKLDS--EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
+ K DS E GV GIDF V V NF++P Y+H GRT +YN+G ++
Sbjct: 227 XGQGAKGDKDSNMEAGVAWGIDFHYVSAVFNFDLPPTPEAYIHXTGRTA-SYNSGIVLTF 285
Query: 301 VSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRES 360
V P E +I+ + E I+ P+ + +E YR D SV K A+ E
Sbjct: 286 VLPREQSHLGKIEDLL--SEENKGPILLPYQFWMEK-IEGFHYRCRDAMHSVAKQAIGEV 342
Query: 361 RAQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
R + + E+L+S+KLK +FE NP+DL +L HD L HL VPDYL+
Sbjct: 343 RLKKSKEELLHSKKLKMYFEDNPRDLQVLWHDLPLHPAVMKPHLGHVPDYLV 394
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+++V +++ ++ RA L PD+V+ TP + LS S F DSL++LV+D+A
Sbjct: 112 EVRVANASAAEDSASQRAVLMEKPDVVVGTPS---RILSHLQQDSLKFRDSLELLVVDKA 168
Query: 72 DLLLSYGYEDDLKALSAV----IPRGCQCLLMS 100
D G+E++LK+L+ V +P +C ++S
Sbjct: 169 DXFF-LGFEEELKSLTCVLNGDLPLLFRCHIIS 200
>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
gi|91206589|sp|Q2UQI6.2|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|391871961|gb|EIT81110.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 820
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 174/379 (45%), Gaps = 82/379 (21%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 424 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 479
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VDKL ++ L+ P L + D K +Q+F + DK L
Sbjct: 480 RQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSKKNTSMNLIQEFVRLRPGREDKRL 535
Query: 153 -YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+L L K E+ + ++F A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 536 GYLLHLCK-EVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFR 594
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD RG+D K V TVIN
Sbjct: 595 EGKVSFLLATD---------------------------------LAARGLDIKGVETVIN 621
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 622 YEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVV---------------------- 659
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQ---DLRNEI---LNSEKL-----KAHFE 380
+ AV++ + + VA V AV + AQ DL EI L EK+ +A +
Sbjct: 660 ---KAAVKASKAQGAKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEMQ 716
Query: 381 VNPKDLDLLKHDKDLSKKP 399
V + +++KH+ ++ +P
Sbjct: 717 VT-RSENMIKHEAEIMSRP 734
>gi|425902081|ref|ZP_18878672.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397892760|gb|EJL09237.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 618
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 59/289 (20%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++A PG + G + ++ILVLDEAD +L G+ D+K + A +P Q
Sbjct: 131 DVLVACPGRLLDLAGQGSVDLSH----VEILVLDEADRMLDMGFVHDVKKVLARLPAKRQ 186
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQ--FWISCSER 148
LL SAT S D+ L +LHNP + EV P N ++Q F ++ S +
Sbjct: 187 NLLFSATFSKDITDLAGKLLHNPERI----------EVTPPNTTVERIEQRVFRLAASHK 236
Query: 149 DKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
LL +++T E V L+FT T A RL +L+K G+ + ++ QN+R L
Sbjct: 237 RALLAHLITAGAWEQV----LVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKAL 292
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG L+ATD RG+D +
Sbjct: 293 ADFKAGEVRILVATDI---------------------------------AARGLDIDQLP 319
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V+NFE+P YVHRIGRTGRA +G ++SLV+PDE K+ + I+
Sbjct: 320 HVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMT 368
>gi|377555812|ref|ZP_09785540.1| ATP-dependent RNA helicase RhlE [endosymbiont of Bathymodiolus sp.]
Length = 430
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 138/283 (48%), Gaps = 43/283 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L G DI++ATPG + S ++ D L+ILV DEAD +L G+ D+K + ++
Sbjct: 120 LRGGVDILVATPGRLLDLYSQNAVKF----DQLEILVFDEADRMLDMGFIHDIKRILKIL 175
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 150
P+ Q L+ SAT S ++ KL K ++++P E+ K+V+Q WI ++ K
Sbjct: 176 PKNRQTLMFSATFSEEIRKLAKTLVNDPI-----EISVTPRNTTVKSVKQ-WIHPVDKSK 229
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+LT L E + L+F+ T A R+ L K GI +A ++ Q +R L +F
Sbjct: 230 KQALLTHLIQEHSWYQVLVFSRTKHGANRIATQLGKKGITAAAIHGNKSQGARTRALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
AG + L+ATD RGID + V+
Sbjct: 290 KAGKVNVLVATDIA---------------------------------ARGIDIVELPHVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
NF++P YVHRIGRTGRA + G ++SLVS DE K +I+
Sbjct: 317 NFDLPNVPEDYVHRIGRTGRAGSKGEAISLVSADEAKQLFDIE 359
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 134/281 (47%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + G + K L++LVLDEAD +L G+ D+K + ++P Q
Sbjct: 125 DILVATPGRLLDLYNQGAVSFKQ----LEVLVLDEADRMLDMGFIHDIKKILKILPAKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT S D+ L K +++NP E+ K V+Q+ ++ K ++
Sbjct: 181 NLMFSATFSDDIRNLAKGLVNNPV-----EISVTPRNATAKTVEQYIYPVDQKQKTAALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L+K + K+ L+F+ T A R+ LE G+ +A ++ Q +R L F +G
Sbjct: 236 HLVK-QNEWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NF++P
Sbjct: 295 RVLVATDI---------------------------------AARGIDIDQLPNVVNFDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA G +VSLVS DE K+ +I+ +
Sbjct: 322 NVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRDIERLI 362
>gi|142982528|sp|A2QAX7.1|DRS1_ASPNC RecName: Full=ATP-dependent RNA helicase drs1
gi|134055839|emb|CAK37361.1| unnamed protein product [Aspergillus niger]
Length = 824
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/368 (29%), Positives = 170/368 (46%), Gaps = 63/368 (17%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 431 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 486
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VDKL ++ L+ P L + D K VQ+F + DK L
Sbjct: 487 RQTMLFSATMTDTVDKLIRVGLNRPVRLMV----DAKKNTAVTLVQEFVRLRPGREDKRL 542
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L E+ + ++F A R+++ G+K+A L+ + Q +E F
Sbjct: 543 GYLLYLCKEIYTGRVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQE---QSVENFRE 599
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD L S RG+D K V TVIN+
Sbjct: 600 GKAAFLLATD----------------------------LAS-----RGLDIKGVETVINY 626
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
E PQ+ Y+HR+GRT RA +G + ++ + PD + +K+ S +I P
Sbjct: 627 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKAGKSQGAKIASRVIEP-- 684
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLKH 391
+S +AE++A V ++ L E L + +A +V K +L+KH
Sbjct: 685 ----AVADSWAAKAEELADEVEEV---------LSEEKLEKQLAQAEMQVT-KGENLIKH 730
Query: 392 DKDLSKKP 399
+ ++ +P
Sbjct: 731 EAEIKSRP 738
>gi|353241604|emb|CCA73408.1| probable DEAD box protein (putative RNA helicase) [Piriformospora
indica DSM 11827]
Length = 458
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 147/301 (48%), Gaps = 54/301 (17%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKAL 86
+ ALA P IV+ATPG + L +K FS SLK LVLDEAD LL + + +
Sbjct: 143 KVALAKRPHIVVATPGRLQDHLE----NTKGFSLRSLKYLVLDEADRLLDMDFGPIIDKI 198
Query: 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK-----NVQQF 141
VIP+ + +L SAT S+ V +L++ L NP VK EV K +QQ+
Sbjct: 199 LKVIPKERRTMLFSATMSTKVKRLQRASLVNP----------VKVEVSSKYSTVSTLQQY 248
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
++ K + ++TL++ L K ++FTNT++ RL L L I + L+++L Q+
Sbjct: 249 YVFGPHMRKEVNMITLVR-SLSGKSIIVFTNTVNDTIRLTLMLRALNIGAIPLHSKLSQS 307
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
+RL L +F AG LIATD RG+
Sbjct: 308 TRLGSLNKFRAGGRQVLIATDVA---------------------------------ARGL 334
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D V VIN+ +PQN+ Y+HR+GRT RA G +++ V+ +++ I+ +G +
Sbjct: 335 DIPQVDVVINYGVPQNSKDYIHRVGRTARAGRAGKAITFVTQYDIEFHLRIEEVIGKKMD 394
Query: 322 E 322
E
Sbjct: 395 E 395
>gi|163750900|ref|ZP_02158133.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161329324|gb|EDQ00321.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 492
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + G + +F + L++LVLDEAD +L G+ D+K + +P Q
Sbjct: 138 DILVATPGRLLDLYNQGAV---NF-NQLEVLVLDEADRMLDMGFIHDIKKILRALPAKRQ 193
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT S D+ KL K +++NP E+ K+V+Q+ ++ K ++
Sbjct: 194 NLMFSATFSDDIRKLAKGLVNNPV-----EISVTPRNATAKSVEQYIYMVDQKQKTAALI 248
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L+K Q + L+F+ T A R+ LE I +A ++ Q +R L F +GL
Sbjct: 249 HLIKQNDWQ-QVLVFSRTKHGANRIAKNLEAKDITAAAIHGNKSQGARTKALANFKSGLV 307
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NF++P
Sbjct: 308 RVLVATDI---------------------------------AARGIDIDQLPNVVNFDLP 334
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA +G +VSLVS DE K+ +I+ +
Sbjct: 335 NVPEDYVHRIGRTGRAGASGQAVSLVSADESKLLRDIERLI 375
>gi|428164262|gb|EKX33294.1| hypothetical protein GUITHDRAFT_81602 [Guillardia theta CCMP2712]
Length = 679
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 171/377 (45%), Gaps = 67/377 (17%)
Query: 35 PDIVIATPGCMPKCL--STGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 92
PD+V+ATPG M L + G+ F ++L+ILVLDEAD LL G+ ++++ L + P+
Sbjct: 235 PDVVVATPGRMIDHLRNAPGI----GF-EALEILVLDEADRLLEMGFTEEVQELVKMCPQ 289
Query: 93 GCQCLLMSATSSSDVDKLKKLILHNPY-------ILTLPEVGDVKDEVIPKNVQQFWISC 145
Q +L SAT + DVDKL L P I T G + +P ++ Q ++
Sbjct: 290 QRQTMLFSATMTHDVDKLAAFSLRRPVRVTADGSIRTDETQGTLNKVAVPSSLLQEFVRI 349
Query: 146 S---ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 202
E+D+ +L L K+ ++F A RL++ G++ L+ L Q
Sbjct: 350 RKEHEKDREAILLCLC-TRTFHKRTIVFCREKRRAHRLRIIFGLLGLRVEELHGNLTQAQ 408
Query: 203 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 262
RL LE F D+L+ATD RG+D
Sbjct: 409 RLEALENFKEEKSDFLLATDLAG---------------------------------RGLD 435
Query: 263 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
K V V+N E+P+N A YVHR+GRT RA G +V+L + D + +K V +
Sbjct: 436 IKGVDVVVNLEVPRNLAEYVHRVGRTARAGRKGRAVTL-ADDSQRTKSMLKEVVRSAPDV 494
Query: 323 DSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVN 382
+ P +A+ ++R R E++ V + E+ + +R + EK +
Sbjct: 495 VKRRVVP-----PDAIAAMRSRIEELEADVAAVMEEEAVERQMRIADMEGEKAR------ 543
Query: 383 PKDLDLLKHDKDLSKKP 399
+L++H++D+ +P
Sbjct: 544 ----NLVEHEEDILARP 556
>gi|340346533|ref|ZP_08669657.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
dentalis DSM 3688]
gi|339611606|gb|EGQ16428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
dentalis DSM 3688]
Length = 591
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 44/284 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + +S G + S VLDEAD +L G+ +D+ +++ +P+ CQ
Sbjct: 140 DVIIATPGRLISHISMGNIDLSRVS----FFVLDEADRMLDMGFSEDIMKIASKLPKTCQ 195
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
++ SAT D++KL + +L NP ++ L + ++Q C E KL I
Sbjct: 196 TIMFSATMPKDIEKLAQSLLKNPAVVKLAVSKPA------EKIKQSAYICYETQKLEIIK 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ K + K+ ++F+ + + +++ I ++++L Q R I+ +F +G
Sbjct: 250 DIFKAGDL-KRVIVFSGSKQKVKHINQAMQRLHINCGEMHSDLEQAERDDIMFKFKSGQI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
D L+ATD V RGID ++ VIN+++P
Sbjct: 309 DVLVATD---------------------------------IVARGIDIDDIAMVINYDVP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
+A YVHRIGRT RA G ++++V+ D+M F +I+ F+ D
Sbjct: 336 HDAEDYVHRIGRTARAERDGVAITMVNEDDMFAFRQIEKFLEKD 379
>gi|91782534|ref|YP_557740.1| ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400]
gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
LB400]
Length = 491
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L +P + + + NV+Q +E DK ++
Sbjct: 195 TLLFSATFSGEIKKLAATYLRDPQTIEV-----ARSNSTATNVRQIVYEVAEGDKTGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ G+ + ++ + QN R+ L+ F G
Sbjct: 250 QLIR-ERGLKQVIVFCNSKIGASRLSRSLERDGVIATAIHGDRSQNERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|326473339|gb|EGD97348.1| ATP-dependent RNA helicase DRS1 [Trichophyton tonsurans CBS 112818]
Length = 700
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 141/283 (49%), Gaps = 44/283 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ ++L + IP+
Sbjct: 418 PDVIIATPGRFIDHMR----NSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKS 473
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCSERDKLL 152
Q +L SAT ++ VDKL ++ L+ P L + D K + + VQ+F + DK L
Sbjct: 474 RQTMLFSATMTNSVDKLIRVGLNKPVRLMV----DSKKQTVGTLVQEFVRLRPGREDKRL 529
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L + + ++F A R+++ G+K+A L+ + Q R+ +E+F
Sbjct: 530 GYLMFLCKTVYSNRVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKSVEDFRD 589
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
YL+ATD L S RG+D K V TVIN+
Sbjct: 590 AKVSYLLATD----------------------------LAS-----RGLDIKGVETVINY 616
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 314
E PQ+ Y+HR+GRT RA +G + ++ + PD + E +K+
Sbjct: 617 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKEAVKA 659
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 151/339 (44%), Gaps = 57/339 (16%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG----CMPKCLSTGVLQSK 57
++IE ++ + +P AL PDIV+ATPG + LS G+
Sbjct: 264 SMIEKLAQFTDIRCCLIVGGLPTKVQEVALRSNPDIVVATPGRIIDHLRNSLSVGL---- 319
Query: 58 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN 117
+ L IL+LDEAD LL G+ ++ L + P+ Q +L SAT + ++D+L KL L+
Sbjct: 320 ---EDLAILILDEADRLLELGFSVEINELIRMCPKRRQTMLFSATMTEEIDELVKLSLNK 376
Query: 118 PYIL----TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNT 173
P L +L + +EV+ I S +L L L+ +++ +IF+ T
Sbjct: 377 PVRLEADPSLKRPATLTEEVV-------RIRRSREANQEAVLLALCLKTFKERVIIFSGT 429
Query: 174 IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD 233
A RLK+ G+K+A L+ L Q RL LE F D LIATD
Sbjct: 430 KHSAHRLKIMFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDILIATDI---------- 479
Query: 234 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 293
RGID V TVINF P++ Y+HR+GRT RA
Sbjct: 480 -----------------------AARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGR 516
Query: 294 TGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPL 332
G +V+ V+ D+ + + I G S I+A P+
Sbjct: 517 EGYAVTFVTDDDRSLLKAIAKKAGSQLK--SRIVAEKPV 553
>gi|392571512|gb|EIW64684.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 772
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/374 (28%), Positives = 175/374 (46%), Gaps = 73/374 (19%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD+VIATPG + L S +F+ D+L ILVLDEAD +L G+ D+L + P
Sbjct: 307 PDVVIATPGRLIDHLRN----SPTFTLDALDILVLDEADRMLEDGFSDELTEIITSCPTS 362
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VD+L ++ L+ P L + D K +Q+F + + +
Sbjct: 363 RQTMLFSATMTDSVDELVRMSLNKPVRLFV----DPKRSTARGLLQEFVRVRAGKETERS 418
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
+L L + +A+IF + +A ++++ G+K L+ +L Q RL L++F
Sbjct: 419 ALLVALCKRSFKARAIIFYRSKKLAHQMRIMFSLLGMKCDELHGDLTQEQRLKALQQFRD 478
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G DYL+ATD L S RG+D K + TVIN+
Sbjct: 479 GHVDYLMATD----------------------------LAS-----RGLDIKGIETVINY 505
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPL 332
+MP + Y+HR+GRT RA G SV+LV + K+ +K+ + +ED
Sbjct: 506 DMPGTLSQYLHRVGRTARAGKKGRSVTLVGEADRKL---LKAAIKHSSSED--------- 553
Query: 333 LAQNAVESLRYR---AEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL--- 386
+R+R E +AK K+A + +EIL EK + H +L
Sbjct: 554 -------QVRHRQVPTEVLAKWAQKLAGLKEEI----SEILQEEKEEKHIRQAEMELKKG 602
Query: 387 -DLLKHDKDLSKKP 399
++++H+ ++ +P
Sbjct: 603 QNMIEHEAEIFSRP 616
>gi|432871164|ref|XP_004071864.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Oryzias latipes]
Length = 488
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 145/288 (50%), Gaps = 44/288 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P IVIATPG + + +K FS +LK LV+DEAD +L+ +E ++ + V
Sbjct: 154 LAKKPHIVIATPGRLIDHMEN----TKGFSLRALKFLVMDEADRILNMDFETEVDKILKV 209
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IPR + L SAT + V KL++ L +P + D+ +QQ+++ +
Sbjct: 210 IPRERRTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDK-----LQQYYVFIPAKY 264
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K Y++++L EL +IF +T + A R+ L L GI + L+ ++ QN RL L +
Sbjct: 265 KDCYLVSILN-ELAGNSFMIFCSTCNNAQRVALMLRNLGITAIPLHGQMSQNKRLGALNK 323
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F + L+ATD RG+D +V V
Sbjct: 324 FKSKSRSVLLATDVAS---------------------------------RGLDIPHVDCV 350
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
IN+++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+S +G
Sbjct: 351 INYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIESLIG 398
>gi|322692214|gb|EFY84155.1| dependent RNA helicase drs-1 [Metarhizium acridum CQMa 102]
Length = 780
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 143/298 (47%), Gaps = 44/298 (14%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDI++ATPG + S SF+ D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 375 PDIIVATPGRFIDHMRN----SASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 430
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +S VD+L + L+ P L + D + + + VQ+F + DK +
Sbjct: 431 RQTMLFSATMTSTVDRLIRAGLNKPVRLMV----DSQKKTVTTLVQEFVRLRPGREDKRM 486
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L ++ +IF A R ++ G+ A L+ + Q+ R+ +E F
Sbjct: 487 GYLAYLCKTFYHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRISSVEAFRD 546
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G YL+ATD L S RG+D K V TVIN+
Sbjct: 547 GKVSYLLATD----------------------------LAS-----RGLDIKGVDTVINY 573
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDENEDSNIIAP 329
E PQ+ YVHR+GRT RA G +V+L + + K+ + +K+ S IIAP
Sbjct: 574 EAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKAAVKAGKAQGAKITSRIIAP 631
>gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 482
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 149/300 (49%), Gaps = 55/300 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + L ++ +FS L++LVLDEAD +L G+ D+K + A++P Q
Sbjct: 125 DILVATPG---RLLDLYNQRAVNFSQ-LEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S D+ KL K +++NP V+ V P+N V+Q WI ++ +
Sbjct: 181 NLMFSATFSDDIRKLAKGLVNNP----------VEISVTPRNATANTVKQ-WICPVDKGQ 229
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+L L + ++ L+F+ T A RL L+ GI +A ++ Q +R L EF
Sbjct: 230 KASVLVKLIKQHDWQQVLVFSRTKHGANRLAKNLDAKGITAAAIHGNKSQGARTKALAEF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + V+
Sbjct: 290 KSGDVRVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPF 330
NF++P YVHRIGRTGRA TG +VSLVS +E+K+ +I+ + +N + +I F
Sbjct: 317 NFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSDEEIKLLRDIELLI--KQNLERRVIEGF 374
>gi|357152629|ref|XP_003576183.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 2
[Brachypodium distachyon]
Length = 770
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 151/339 (44%), Gaps = 57/339 (16%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPG----CMPKCLSTGVLQSK 57
++IE ++ + +P AL PDIV+ATPG + LS G+
Sbjct: 254 SMIEKLAQFTDIRCCLIVGGLPTKVQEVALRSNPDIVVATPGRIIDHLRNSLSVGL---- 309
Query: 58 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN 117
+ L IL+LDEAD LL G+ ++ L + P+ Q +L SAT + ++D+L KL L+
Sbjct: 310 ---EDLAILILDEADRLLELGFSVEINELIRMCPKRRQTMLFSATMTEEIDELVKLSLNK 366
Query: 118 PYIL----TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNT 173
P L +L + +EV+ I S +L L L+ +++ +IF+ T
Sbjct: 367 PVRLEADPSLKRPATLTEEVV-------RIRRSREANQEAVLLALCLKTFKERVIIFSGT 419
Query: 174 IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSD 233
A RLK+ G+K+A L+ L Q RL LE F D LIATD
Sbjct: 420 KHSAHRLKIMFGLSGMKAAELHGNLTQAQRLEALELFKKQEVDILIATDI---------- 469
Query: 234 EGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 293
RGID V TVINF P++ Y+HR+GRT RA
Sbjct: 470 -----------------------AARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGR 506
Query: 294 TGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPL 332
G +V+ V+ D+ + + I G S I+A P+
Sbjct: 507 EGYAVTFVTDDDRSLLKAIAKKAGSQLK--SRIVAEKPV 543
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 136/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q +++LVLDEAD +L G+ DL+ + ++P+ CQ
Sbjct: 145 EILIATPGR----LLDHVQQKTVNLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKECQ 200
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S+++ KL L NP + + + NV+Q E DK +
Sbjct: 201 TLLFSATFSAEIKKLASTYLRNPQTIEV-----ARSNSTNANVRQIVYEVHESDKSGAVA 255
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ GI + ++ + Q+ R+ L+ F G
Sbjct: 256 QLIR-ERKLKQVIVFCNSKIGASRLARVLERDGIVATAIHGDRTQSERMQALDAFKRGEI 314
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 315 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 341
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL S +E K +I+ +
Sbjct: 342 FNAEDYVHRIGRTGRAGASGDALSLCSANERKQLADIEKLI 382
>gi|298711460|emb|CBJ32599.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 848
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 151/309 (48%), Gaps = 46/309 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ LK V + + ALA P +VIATPG + L +K FS + K LVLD
Sbjct: 501 IGLKTVCIVGGIDMFQQSVALALKPHVVIATPGRLVDHLEN----TKGFSLRTAKYLVLD 556
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD +L +E+++ + +V+PR + L SAT +S V KL++ L NP + +V
Sbjct: 557 EADRMLGMDFEEEINKVLSVLPRERRTFLFSATMTSKVAKLQRASLKNPARV------EV 610
Query: 130 KDEV-IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
++ PK + Q ++ + K Y+ +L E + ++F +T + A R+ L L G
Sbjct: 611 ANKFSTPKTLVQQYLFIPAKHKDCYLAYVLN-EFAGQSTIVFVSTCNNAQRVALLLRNLG 669
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
++ L+ ++ Q RL L +F +G + LIATD
Sbjct: 670 FQAVCLHGQMGQPKRLGALGKFKSGQRNVLIATDVAS----------------------- 706
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D +V V+N E+P + Y+HR+GRT RA G S++ V+ ++++
Sbjct: 707 ----------RGLDIPSVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEV 756
Query: 309 FEEIKSFVG 317
++ +++ +G
Sbjct: 757 YQRMEALIG 765
>gi|385203300|ref|ZP_10030170.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385183191|gb|EIF32465.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 491
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 138/281 (49%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L +P + + + NV+Q +E DK ++
Sbjct: 195 TLLFSATFSGEIKKLAATYLRDPQTIEV-----ARSNSTATNVRQIVYEVAEGDKTGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ G+ + ++ + QN R+ L+ F G
Sbjct: 250 QLIR-ERGLKQVIVFCNSKIGASRLARSLERDGVIATAIHGDRSQNERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 856
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 174/379 (45%), Gaps = 82/379 (21%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 460 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 515
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VDKL ++ L+ P L + D K +Q+F + DK L
Sbjct: 516 RQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSKKNTSMNLIQEFVRLRPGREDKRL 571
Query: 153 -YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+L L K E+ + ++F A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 572 GYLLHLCK-EVYTGRVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFR 630
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD RG+D K V TVIN
Sbjct: 631 EGKVSFLLATD---------------------------------LAARGLDIKGVETVIN 657
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 658 YEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV----------------------- 694
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQ---DLRNEI---LNSEKL-----KAHFE 380
+ AV++ + + VA V AV + AQ DL EI L EK+ +A +
Sbjct: 695 --VKAAVKASKAQGAKVASRVVDPAVADRWAQKAKDLEEEINAVLEEEKIEKQLAQAEMQ 752
Query: 381 VNPKDLDLLKHDKDLSKKP 399
V + +++KH+ ++ +P
Sbjct: 753 VTRSE-NMIKHEAEIMSRP 770
>gi|348511400|ref|XP_003443232.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Oreochromis niloticus]
Length = 479
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 145/289 (50%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
LA P +VIATPG + L +K FS +LK LV+DEAD +L+ +E ++ +
Sbjct: 151 VLAKKPHVVIATPGRLIDHLE----NTKGFSLRALKFLVMDEADRILNMDFETEVDKILK 206
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L +P + D+ +QQ++I +
Sbjct: 207 VIPRERRTFLFSATMTKKVQKLERAALKDPVKCAVSTKYSTVDK-----LQQYYIFIPSK 261
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++++L EL +IF +T + A R+ L L GI + L+ ++ QN RL L
Sbjct: 262 YKDCYLVSILN-ELAGNSFIIFCSTCNTAQRVALLLRNLGITAIPLHGQMSQNKRLGALN 320
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F + L+ATD RG+D +V
Sbjct: 321 KFKSKSRSVLLATDVAS---------------------------------RGLDIPHVDC 347
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I++ +G
Sbjct: 348 VINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIETLIG 396
>gi|154315003|ref|XP_001556825.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|160358659|sp|A6RW56.1|RRP3_BOTFB RecName: Full=ATP-dependent rRNA helicase rrp3
gi|347841755|emb|CCD56327.1| similar to ATP-dependent rRNA helicase rrp3 [Botryotinia
fuckeliana]
Length = 486
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 156/314 (49%), Gaps = 45/314 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+++K + M AL P I++ATPG + L +K FS SLK LV+D
Sbjct: 155 IRVKCAVIVGGMDMVPQSIALGKKPHIIVATPGRLLDHLEN----TKGFSLRSLKYLVMD 210
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL + L + V+PR + L SAT SS V+ L++ L +P ++ +
Sbjct: 211 EADRLLDLDFGPILDKILKVLPRERRTYLFSATISSKVESLQRASLKDPLRVS---ISSN 267
Query: 130 KDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
K + + +Q + +I +D Y++ LL E + A+IFT T++ R+ + L G
Sbjct: 268 KYQTVSTLIQNYIFIPLIHKDT--YLIYLLN-EFAGQSAIIFTRTVNETQRIAILLRTLG 324
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
+ L+ +L Q+SRL L +F AG + L+ATD
Sbjct: 325 FGAIPLHGQLSQSSRLGALNKFRAGSREILVATDVA------------------------ 360
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D +V V+N+++PQ++ Y+HR+GRT RA +G ++S+V+ +++I
Sbjct: 361 ---------ARGLDIPSVDVVLNYDVPQDSKTYIHRVGRTARAGKSGHAISVVTQYDLEI 411
Query: 309 FEEIKSFVGDDENE 322
F I++ +G + E
Sbjct: 412 FMRIEAALGKKQVE 425
>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 550
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 150/305 (49%), Gaps = 57/305 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + Q + L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 136 DVLVATPGRLMDLYN----QKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q W+ ++ +
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNP----------VEISVTPRNAAATTVKQ-WVCPVDKGQ 240
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+LT L + ++ L+F+ T A RL LE+ GIK+A ++ Q +R L +F
Sbjct: 241 KAALLTQLIKQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADF 300
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 301 KNGQVRVLVATDI---------------------------------AARGLDIDQLPQVV 327
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG---DDE-NEDSNI 326
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ + D E E N
Sbjct: 328 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDIERLINRILDREVVEGFNP 387
Query: 327 IAPFP 331
+ P P
Sbjct: 388 VHPLP 392
>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 477
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 145/298 (48%), Gaps = 63/298 (21%)
Query: 29 AALAGPPDIVIATPG-----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 83
AAL DI++ATPG C K +S FS L+ILVLDEAD +L G+ D+
Sbjct: 118 AALRNGVDILVATPGRLLDLCQQKAIS--------FSK-LEILVLDEADRMLDMGFIRDI 168
Query: 84 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----V 138
K + A++P Q L+ SAT S+++ +L K +++NP V+ V P+N V
Sbjct: 169 KKVLALLPAKRQNLMFSATFSNEIRELAKGLVNNP----------VEISVTPRNATANTV 218
Query: 139 QQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 198
Q + K + ++ L+K K+ L+F+ T A RL LE GIK+A ++
Sbjct: 219 TQCVYPVDKTRKSMALIELIKTN-DWKQVLVFSRTKHGANRLAKSLEAAGIKAAAIHGNK 277
Query: 199 PQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV 258
Q +R L +F AG ++ATD
Sbjct: 278 SQTARTKALADFKAGAVQVMVATDIA---------------------------------A 304
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
RGID + V+NF++P YVHRIGRTGRA +TG +VSLV +E+K+ +I+ +
Sbjct: 305 RGIDIDQLPFVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHDIERLI 362
>gi|143454043|sp|Q0INC5.2|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 802
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 143/311 (45%), Gaps = 57/311 (18%)
Query: 30 ALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
AL PDIV+ATPG + LS G+ + L IL+LDEAD LL G+ +++
Sbjct: 311 ALRSMPDIVVATPGRIIDHLRNSLSVGL-------EDLAILILDEADRLLELGFSAEIQE 363
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQQF 141
L + PR Q +L SAT + ++++L L L+ P L +L + +EV+
Sbjct: 364 LIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVV------- 416
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
I + +L L L+ + K +IF+ T A RLK+ G+K+A L+ L Q
Sbjct: 417 RIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQA 476
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
RL LE F D+LIATD RGI
Sbjct: 477 QRLEALELFKKQEVDFLIATDV---------------------------------AARGI 503
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D V TVINF P++A Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 504 DIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLK 563
Query: 322 EDSNIIAPFPL 332
S I+A P+
Sbjct: 564 --SRIVAEKPV 572
>gi|66472376|ref|NP_001018522.1| probable ATP-dependent RNA helicase DDX47 [Danio rerio]
gi|63102032|gb|AAH95776.1| Zgc:112350 [Danio rerio]
Length = 512
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 44/288 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P +VIATPG + + +K F+ +LK LV+DEAD +L+ +E ++ + V
Sbjct: 194 LAKKPHVVIATPGRLIDHME----NTKGFNLRALKYLVMDEADRILNMDFESEVDKILKV 249
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IPR + L SAT + V KL++ L +P ++ D+ +QQF+I +
Sbjct: 250 IPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVSSKYATVDK-----LQQFYIFIPSKY 304
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K Y++++L EL ++F T + R+ L L GI + L+ ++ QN RL L +
Sbjct: 305 KDCYLVSILN-ELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNK 363
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F + L+ATD RG+D +V V
Sbjct: 364 FKSKSRSVLLATDVAS---------------------------------RGLDIPHVDCV 390
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
INF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I++ +G
Sbjct: 391 INFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEALIG 438
>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 453
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 147/297 (49%), Gaps = 46/297 (15%)
Query: 22 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 80
MPA + ALA P IV+ATPG + + L ++K FS S+K LVLDEAD LL +
Sbjct: 125 MPAQAI--ALAKRPHIVVATPGRLMQHLE----ETKGFSLRSIKFLVLDEADRLLDLDFG 178
Query: 81 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 140
+ + VIP+ L SAT ++ V KL++ L NP + EV V + Q
Sbjct: 179 ASIDKILKVIPKERTTYLFSATMTTKVAKLQRASLSNPVRI---EVSSKYQTV--STLLQ 233
Query: 141 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 200
+++ +DK Y++ L+ L Q ++FT T+ A RL + L G + L+ +L Q
Sbjct: 234 YYLLMPLKDKDAYLIYLIN-SLAQNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQ 292
Query: 201 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 260
+ RL L +F +G L+ATD RG
Sbjct: 293 SQRLGALGKFKSGGRRVLVATDVAS---------------------------------RG 319
Query: 261 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+D +V VINF++P ++ Y+HR+GRT RA G S++LV+ ++++ + I+ VG
Sbjct: 320 LDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRIEQVVG 376
>gi|253573302|ref|ZP_04850645.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846830|gb|EES74835.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 518
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 134/282 (47%), Gaps = 53/282 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I+I TPG + ++ ++ D +K +VLDEAD +L G+ DD++++ +
Sbjct: 116 ALKKKPQIIIGTPGRLLDHINRKTIKL----DDVKTVVLDEADEMLDMGFMDDIQSILKL 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ-----QFWIS 144
+P Q +L SAT +++ KL + L NP ++ VIPK V Q +I
Sbjct: 172 VPEDRQTMLFSATMPANIQKLAQQFLKNPEHVS----------VIPKQVSAPLIDQAYIE 221
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
ER K + LL +E + A++F T L L+K G + L+ +L QN R
Sbjct: 222 VHERQKFDALTRLLDME-SPELAIVFGRTKRRVDELSEALQKQGYSADGLHGDLSQNQRD 280
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
+++ +F G D L+ATD RG+D
Sbjct: 281 NVMRKFRDGSIDVLVATD---------------------------------VAARGLDVS 307
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
V V+NF++PQ+ YVHRIGRTGRA G + S V+P EM
Sbjct: 308 GVTHVVNFDLPQDPESYVHRIGRTGRAGKEGVAWSFVTPREM 349
>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
gi|113649278|dbj|BAF29790.1| Os12g0481100, partial [Oryza sativa Japonica Group]
Length = 832
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 143/311 (45%), Gaps = 57/311 (18%)
Query: 30 ALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
AL PDIV+ATPG + LS G+ + L IL+LDEAD LL G+ +++
Sbjct: 341 ALRSMPDIVVATPGRIIDHLRNSLSVGL-------EDLAILILDEADRLLELGFSAEIQE 393
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQQF 141
L + PR Q +L SAT + ++++L L L+ P L +L + +EV+
Sbjct: 394 LIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVV------- 446
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
I + +L L L+ + K +IF+ T A RLK+ G+K+A L+ L Q
Sbjct: 447 RIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQA 506
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
RL LE F D+LIATD RGI
Sbjct: 507 QRLEALELFKKQEVDFLIATDV---------------------------------AARGI 533
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D V TVINF P++A Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 534 DIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLK 593
Query: 322 EDSNIIAPFPL 332
S I+A P+
Sbjct: 594 --SRIVAEKPV 602
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 161 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 216
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 217 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 271
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ E K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 272 QLLR-ERGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEV 330
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 331 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 357
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 358 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 398
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L +P + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSGEIKKLAATYLRDPQTIEV-----ARSNSTATNVTQIVYEVAEGDKTGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ G+ + ++ + QN R+ L+ F G
Sbjct: 250 QLIR-ERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|406678359|ref|ZP_11085535.1| hypothetical protein HMPREF1170_03743 [Aeromonas veronii AMC35]
gi|404622440|gb|EKB19303.1| hypothetical protein HMPREF1170_03743 [Aeromonas veronii AMC35]
Length = 415
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 145/293 (49%), Gaps = 55/293 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL DI+IATPG + L G L DSL+ LV DEAD +L G+ D++KAL
Sbjct: 122 ALQAGVDILIATPGRLLDHLRQGALSL----DSLRHLVFDEADRMLDMGFMDEIKALLKQ 177
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNV------QQFWI 143
IP Q LL SAT ++ L K++L +P ++ EV P+N Q+ +
Sbjct: 178 IPADRQTLLFSATCDDNLFALCKVLLRDPELI----------EVAPRNTTAAEVEQRVYT 227
Query: 144 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
S+R + L + +LK++ ALIF+ T A +L L K GI + + +L Q++R
Sbjct: 228 VDSDRKQAL-VEHMLKVK-GWAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQSAR 285
Query: 204 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 263
+L EF AG L+ATD RG+D
Sbjct: 286 EKVLLEFRAGTLQALVATDVA---------------------------------ARGLDI 312
Query: 264 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 313 TDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 365
>gi|406868092|gb|EKD21129.1| ATP-dependent RNA helicase DRS1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 820
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/352 (28%), Positives = 166/352 (47%), Gaps = 53/352 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + V SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 400 PDVIIATPGRFIDHMRNSV----SFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKS 455
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT SS VD L ++ L+ P L + D + + + VQ+F E ++
Sbjct: 456 RQTMLFSATMSSSVDNLIRVGLNRPVRLLV----DAQKQTVGTLVQEFIRLRPGRETKRM 511
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+L L + + ++F A R ++ G+K+ L+ + Q R++ +E F
Sbjct: 512 GYLLYLC-ANIYTDRVIVFFRQKKEAHRARVIFGLSGLKATELHGSMSQEQRINSVEAFR 570
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD L S RG+D K V TVIN
Sbjct: 571 DGKASFLLATD----------------------------LAS-----RGLDIKGVDTVIN 597
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
+E PQ+ Y+HR+GRT RA G + +L + + KI +K+ V + + I++
Sbjct: 598 YEAPQSHEIYLHRVGRTARAGRQGRACTLAAEPDRKI---VKAAVKTGRTQGAKIVS--R 652
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRN---EILNSEKLKAHFE 380
++ + + + +D+ + +I + E + L E+ E + AH E
Sbjct: 653 VIEASEADEWAAKVDDMKDEIDEILIEEKEDKQLAQVEMEVRKGENIMAHGE 704
>gi|386314915|ref|YP_006011080.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 539
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 150/305 (49%), Gaps = 57/305 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + Q + L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 125 DVLVATPGRLMDLYN----QKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q W+ ++ +
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNP----------VEISVTPRNAAATTVKQ-WVCPVDKGQ 229
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+LT L + ++ L+F+ T A RL LE+ GIK+A ++ Q +R L +F
Sbjct: 230 KSALLTQLIKQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 290 KNGQVRVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG---DDE-NEDSNI 326
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ + D E E N
Sbjct: 317 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDIERLINRILDREVVEGFNP 376
Query: 327 IAPFP 331
+ P P
Sbjct: 377 VHPLP 381
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 141/284 (49%), Gaps = 43/284 (15%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
A L PD+V+ATPG + L S+SF+ D+L +LVLDEAD +LS G+ D+LK +
Sbjct: 301 ATLRTRPDLVVATPGRLIDHLR----NSRSFALDALDVLVLDEADRMLSDGFADELKEIV 356
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-ISCS 146
P G Q +L SAT + DV+ L +L L +P L + D + VQ+F +
Sbjct: 357 QSCPTGRQTMLFSATMTDDVETLIRLSLRHPVRLFV----DPSKQTARGLVQEFVRVRAG 412
Query: 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
+ + +L L +K +IF + +A + ++ G+K+ L+ L Q RL+
Sbjct: 413 KEAERPALLVALCQRTARKGVIIFFRSKKLAHQFRVVFGLCGLKALELHGNLTQEQRLNA 472
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L +F +G DYL+ATD L S RG+D + +
Sbjct: 473 LTKFRSGEADYLLATD----------------------------LAS-----RGLDIRGI 499
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
TVIN++MP YVHR+GRT RA G S++LV + K+ +
Sbjct: 500 ETVINYDMPGQIEQYVHRVGRTARAGKKGRSITLVGEADRKMLK 543
>gi|356504849|ref|XP_003521207.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Glycine
max]
Length = 439
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 148/311 (47%), Gaps = 48/311 (15%)
Query: 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVL 68
++ +K L + +A P I++ TPG + L +K FS S LK LVL
Sbjct: 105 EIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVIDHLK----HTKGFSLSRLKYLVL 160
Query: 69 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 128
DEAD LL+ +E+ L + +IPR + L SAT + V KL+++ L NP +
Sbjct: 161 DEADRLLNEDFEESLNEILQMIPRERRTFLFSATMTKKVQKLQRVCLRNPVKIE----AS 216
Query: 129 VKDEVIPKNVQQF-WISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 186
K + QQ+ ++ +D L+YILT E+ +++FT T D L L L
Sbjct: 217 SKYSTVDTLKQQYRFLPAKHKDCYLVYILT----EMAGSTSMVFTRTCDATRLLALILRN 272
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
G+K+ +N + Q+ RL L +F +G + L+ TD
Sbjct: 273 LGLKAIPINGHMSQSKRLGALNKFKSGECNILLCTDVAS--------------------- 311
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
RG+D V VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E+
Sbjct: 312 ------------RGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYEL 359
Query: 307 KIFEEIKSFVG 317
+ + +I+ +G
Sbjct: 360 EWYIQIEKLIG 370
>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 550
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 150/305 (49%), Gaps = 57/305 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + Q + L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 136 DVLVATPGRLMDLYN----QKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q W+ ++ +
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNP----------VEISVTPRNAAATTVKQ-WVCPVDKGQ 240
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+LT L + ++ L+F+ T A RL LE+ GIK+A ++ Q +R L +F
Sbjct: 241 KSALLTQLIKQHDWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADF 300
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 301 KNGQVRVLVATDI---------------------------------AARGLDIDQLPQVV 327
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG---DDE-NEDSNI 326
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ + D E E N
Sbjct: 328 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDIERLINRILDREVVEGFNP 387
Query: 327 IAPFP 331
+ P P
Sbjct: 388 VHPLP 392
>gi|157962445|ref|YP_001502479.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157847445|gb|ABV87944.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 448
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/315 (32%), Positives = 151/315 (47%), Gaps = 44/315 (13%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+ L Q K ++ +D AL+ P V+ATPG + L Q + L
Sbjct: 93 LRLLVANTQFKATKILGGENFNDQAKALSRDPHFVVATPGRLADHLK----QHHLHLNGL 148
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIP-RGCQCLLMSAT-SSSDVDKLKKLILHNPYIL 121
++L+LDEAD +L G+ + LK ++A + Q L+ SAT DV+ + +L P +
Sbjct: 149 ELLILDEADRMLDLGFAEQLKMINAAADHKRRQTLMFSATLDHGDVNDIANELLKFPEHV 208
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
+ G+++ K++ Q C D ILT + E QK+ +IFT T RL
Sbjct: 209 AIG-AGNLEH----KDITQRIFLCDHLDHKEAILTRILKEEQQKQIIIFTATRQDTDRLA 263
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
L G K+A L+ EL QN+R I++EF+ GL L+ TD V S
Sbjct: 264 TKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQILVTTD---------------VAS- 307
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D NV VINF+MP+ A YVHRIGRTGRA G ++SLV
Sbjct: 308 -----------------RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350
Query: 302 SPDEMKIFEEIKSFV 316
P + F ++++F+
Sbjct: 351 GPKDWINFTQVQTFL 365
>gi|453082962|gb|EMF11008.1| ATP-dependent rRNA helicase RRP3 [Mycosphaerella populorum SO2202]
Length = 516
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 160/339 (47%), Gaps = 43/339 (12%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ +K + M + + ALA P I++ATPG + L +K FS LK LV+D
Sbjct: 183 INVKCAVIVGGMDMTPQQIALAKKPHIIVATPGRLMDHLEN----TKGFSLRKLKYLVMD 238
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL + L + V+PR + +L SAT S+ +D L + L +P +++
Sbjct: 239 EADRLLDLDFGPILDKILQVLPRERRTMLFSATMSTKLDNLTRAALQSPVRVSISS---- 294
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
KN++Q +I + K +Y++ L+ E + +IFT TI+ R+ L G
Sbjct: 295 SSYQTVKNLKQSYIFIPHKFKDIYLVYLVN-EFAGQTCIIFTRTINETARIAFLLRALGR 353
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ L+ +L Q++RL L +F G D L+ATD
Sbjct: 354 SAIPLHGQLNQSARLGALNKFRGGSRDILVATDVA------------------------- 388
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RG+D +V V+N+++P ++ YVHR+GRT RA G ++S+V+ +++++
Sbjct: 389 --------ARGLDIPSVDLVLNYDLPPDSKTYVHRVGRTARAGKAGVAISIVTQYDVEVY 440
Query: 310 EEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
+ I+ +G E + AQ E+ R +++
Sbjct: 441 QRIEKALGKKLAEFGTEKDEVMVFAQRVQEAQRVAVQEM 479
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 146/311 (46%), Gaps = 57/311 (18%)
Query: 30 ALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
AL PDIV+ATPG + LS G+ + L +++LDEAD LL G+ +++
Sbjct: 279 ALRSMPDIVVATPGRIIDHLRNSLSVGL-------EDLAVVILDEADRLLELGFSAEIQE 331
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQQF 141
L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+ +++
Sbjct: 332 LIRMCPKRRQTMLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVV--RIRRA 389
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
S E +L L L+ ++ +IF+ T A RLK+ G+K+A L+ L Q
Sbjct: 390 RESNQE-----AVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQA 444
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
RL LE F D+LIATD RGI
Sbjct: 445 QRLEALELFRKQEVDFLIATD---------------------------------VAARGI 471
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 472 DIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLK 531
Query: 322 EDSNIIAPFPL 332
S I+A P+
Sbjct: 532 --SRIVAEKPV 540
>gi|401884069|gb|EJT48246.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 435
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 146/289 (50%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL+ P I++ATPG + L +K FS +LK LVLDEAD LL + + L
Sbjct: 114 ALSKRPHIIVATPGRLMDHLE----NTKGFSLKALKYLVLDEADRLLDLDFGPIIDKLLK 169
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIP+ L SAT S+ V+KLK+ L+ P + + D K + + Q+++ E
Sbjct: 170 VIPKERNTFLFSATLSTKVEKLKRASLNKPIQVKV----DSKYSTV-STLMQYYVFFPEV 224
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y+ L+ EL +IFT+T+D A RL + L + G + L+ ++ Q++RL L
Sbjct: 225 QKDAYLFYLVN-ELSSSSMIIFTSTVDRAQRLSIMLNRLGYPAIPLHGQMSQSARLGSLN 283
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G L+ATD RG+D +V
Sbjct: 284 KFKSGGRKILVATDVAS---------------------------------RGLDIPSVDL 310
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VINF++P N+ YVHR+GRT RA +G S++LV+ ++ + + I++ +G
Sbjct: 311 VINFDIPSNSKDYVHRVGRTARAGRSGKSITLVTQYDVVMLKGIEAAIG 359
>gi|402847520|ref|ZP_10895803.1| DEAD/DEAH box helicase [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402266180|gb|EJU15625.1| DEAD/DEAH box helicase [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 460
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 45/290 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
R +A +IVIATPG + L+ LQ S + VLDEAD +L G+++D+ ++
Sbjct: 119 RRGMALGAEIVIATPG---RLLALMNLQQADLS-GVTYFVLDEADRMLDMGFQEDIMQIN 174
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+ +P+GCQ ++ SAT + K + ILHNP + L P+++ Q C E
Sbjct: 175 SALPKGCQRVMFSATMPPKIKKFARTILHNPAEVEL------AISRPPESIVQSAYVCYE 228
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
R KL ILT L E + +IF+++ L L + I+ ++++L Q R ++
Sbjct: 229 RQKLP-ILTQLFRETPPTRTIIFSSSKLKVKELTAALSRLSIRVEQMHSDLTQEKREEVM 287
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+ F +G D L+ATD V RGID N+
Sbjct: 288 KNFKSGNIDLLVATDV---------------------------------VARGIDIDNIR 314
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYN-TGASVSLVSPDEMKIFEEIKSFV 316
VIN+++P + YVHRIGRT R N G +++ VS E F I+ F+
Sbjct: 315 MVINYDIPHDPEDYVHRIGRTARGGNDEGLAITFVSEKEQPGFGRIEEFL 364
>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
Length = 802
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 143/311 (45%), Gaps = 57/311 (18%)
Query: 30 ALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
AL PDIV+ATPG + LS G+ + L IL+LDEAD LL G+ +++
Sbjct: 311 ALRSMPDIVVATPGRIIDHLRNSLSVGL-------EDLAILILDEADRLLELGFSAEIQE 363
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQQF 141
L + PR Q +L SAT + ++++L L L+ P L +L + +EV+
Sbjct: 364 LIRMCPRRRQTMLFSATMTEEINELVTLSLNKPVRLEADPSLKRPATLTEEVV------- 416
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
I + +L L L+ + K +IF+ T A RLK+ G+K+A L+ L Q
Sbjct: 417 RIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRLKIIFGLSGMKAAELHGNLTQA 476
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
RL LE F D+LIATD RGI
Sbjct: 477 QRLEALELFKKQEVDFLIATDV---------------------------------AARGI 503
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D V TVINF P++A Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 504 DIVGVRTVINFSCPRDARTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLK 563
Query: 322 EDSNIIAPFPL 332
S I+A P+
Sbjct: 564 --SRIVAEKPV 572
>gi|410901863|ref|XP_003964414.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Takifugu
rubripes]
Length = 471
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 145/289 (50%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
LA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 152 VLAKKPHIVIATPGRLIDHLE----NTKGFTLRALKFLVMDEADRILNMDFETEVDKILK 207
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L +P + D+ +QQ++I +
Sbjct: 208 VIPRERRTFLFSATMTKKVQKLQRAALKDPVKCAVSTKYSTVDK-----LQQYYIFIPSK 262
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++++L +L +IF +T + A R+ L L GI + L+ ++ QN RL L
Sbjct: 263 YKDCYLVSILN-DLAGNSFIIFCSTCNNAQRVALLLRNLGITAISLHGQMSQNKRLGALN 321
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F + L+ATD RG+D +V
Sbjct: 322 KFKSKSRSVLLATDVAS---------------------------------RGLDIPHVDC 348
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+S +G
Sbjct: 349 VINYDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIESLIG 397
>gi|380487114|emb|CCF38253.1| DEAD/DEAH box helicase [Colletotrichum higginsianum]
Length = 777
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 137/276 (49%), Gaps = 42/276 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 374 PDVIIATPGRFIDHMRN----SASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 429
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +S VDKL ++ ++ P + V K++ + VQ+F + DK +
Sbjct: 430 RQTMLFSATMTSSVDKLVRVGMNKPARVM---VDSQKNKTVGTLVQEFVRLRPGREDKRM 486
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L + + ++ ++F A R ++ G+ A L+ + Q R+ +E F
Sbjct: 487 GYLVHICKTMHTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIASVENFRD 546
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +YL+ATD L S RG+D K V TVIN+
Sbjct: 547 GKVNYLLATD----------------------------LAS-----RGLDIKGVDTVINY 573
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
E PQN YVHR+GRT RA TG +++L + + K+
Sbjct: 574 EAPQNIEIYVHRVGRTARAGRTGIAITLAAEPDRKV 609
>gi|441504874|ref|ZP_20986866.1| ATP-dependent RNA helicase RhlE [Photobacterium sp. AK15]
gi|441427456|gb|ELR64926.1| ATP-dependent RNA helicase RhlE [Photobacterium sp. AK15]
Length = 498
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 136/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + ++ + L++LVLDEAD +L G+ D+K + A++P+ Q
Sbjct: 125 DVLVATPGRLLDLYNQNAVKF----NQLEVLVLDEADRMLDMGFIRDIKKILALLPKQRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ +L K ++++P E+ K V+Q WI ++ K +L
Sbjct: 181 NLLFSATFSDEIRELAKGLVNDPV-----EISVTPRNTTAKTVKQ-WIHPVDKKKKPAVL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
T L + K+AL+FT T A RL +LE I +A ++ Q +R L F +G
Sbjct: 235 TKLIQDNKWKQALVFTRTKHGANRLTAYLEARDITAAAIHGNKSQGARTKALANFKSGEV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NF++P
Sbjct: 295 RILVATDI---------------------------------AARGIDIDQLPQVVNFDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
A YVHRIGRTGRA G ++SLV DE K +I+
Sbjct: 322 NVAEDYVHRIGRTGRAGAEGQAISLVCADEFKELTDIERLT 362
>gi|432328452|ref|YP_007246596.1| DNA/RNA helicase, superfamily II [Aciduliprofundum sp. MAR08-339]
gi|432135161|gb|AGB04430.1| DNA/RNA helicase, superfamily II [Aciduliprofundum sp. MAR08-339]
Length = 450
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 135/281 (48%), Gaps = 44/281 (15%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+VI TPG + + G L +KI VLDEAD +L G+ +D++ + + PR Q
Sbjct: 118 VVIGTPGRVMDLMRRGYLDL----SRIKIFVLDEADRMLDMGFIEDIRWILSKAPREKQM 173
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILT 156
+L SAT ++ L + + NP + L DE+ +NV QF++ E +K+ + +
Sbjct: 174 MLFSATMPQEIINLARHYMSNPEKIILS-----ADEITAENVSQFYVEVGEINKIAKLSS 228
Query: 157 LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
L+ E K L+F NT + L+K+G ++ L+ ++ Q SR ++ F G +
Sbjct: 229 LIINE--GGKYLVFCNTKRNTKSVAEILQKYGFRAFALHGDMRQASRSRTMDAFKQGKIN 286
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
LI+TD RGID + V+N+++PQ
Sbjct: 287 ILISTDVA---------------------------------ARGIDVHGITHVVNYDVPQ 313
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
YVHRIGRTGR G +++ VS +EM+ F I+ F+G
Sbjct: 314 YPKDYVHRIGRTGRLDARGKAITFVSREEMEYFRRIEEFIG 354
>gi|404491935|ref|YP_006716041.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544066|gb|ABA87628.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 435
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 163/347 (46%), Gaps = 46/347 (13%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEA 71
L L +P D ALA P D+V+ATPG + L LQ +S S L++LVLDEA
Sbjct: 102 LTTAVLLGGVPYRDQFRALAKPLDLVVATPG---RLLDH--LQRRSIDLSCLEMLVLDEA 156
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+++D+ + A PR Q ++ +AT + + K+ + +L +P+ + + V +V D
Sbjct: 157 DRMLDMGFKEDVDKVCAAAPRQRQTMMFTATLNDAMQKMARRLLDDPFRIDIAVVKNVSD 216
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ Q ++ + + K + LLK + +A++F+ T A L L G ++
Sbjct: 217 HI----EQHLHVADNRQHKNRLLQHLLKHSDI-SQAIVFSATKRDADSLARDLSAQGYRA 271
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
A L+ ++ Q +R + + G L+ATD
Sbjct: 272 AALHGDMNQGARNRTVRDLRRGRIRVLVATDVA--------------------------- 304
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D + V N+++P+ A YVHRIGRTGRA TG ++S VS E+
Sbjct: 305 ------ARGLDVAGISHVFNYDLPKFAEDYVHRIGRTGRAGATGVAISFVSGAEVSALRR 358
Query: 312 IKSFVGDD--ENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIA 356
I+ F+G + E + FPL A +A RY+ +S K A
Sbjct: 359 IQHFIGRELPRREIPGLEPRFPLRAASAEGRRRYKGNGPNRSGRKPA 405
>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 492
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 142/286 (49%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + L ++ SFS L++LVLDEAD +L G+ D+K + A++P Q
Sbjct: 125 DILVATPG---RLLDLYNQRAVSFSQ-LEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S D+ +L K +++NP V+ V P+N V+Q+ K
Sbjct: 181 NLMFSATFSDDIRQLAKGLVNNP----------VEISVTPRNATANTVKQWICPVDHGQK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+ ++ L+K Q + L+F+ T A RL LE GI +A ++ Q +R L +F
Sbjct: 231 VAVLIELIKQNDWQ-QVLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + V+
Sbjct: 290 KSGAVRVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ +
Sbjct: 317 NFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLRDIELLI 362
>gi|330448478|ref|ZP_08312126.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328492669|dbj|GAA06623.1| DEAD-box-containing ATP-dependent RNA helicase family member
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 494
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 138/277 (49%), Gaps = 53/277 (19%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + S ++ F D ++ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 125 DVLVATPGRLMDLHSQNAVK---FRD-IEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ +L K ++++P V+ +V P+N V+Q WI ++ K
Sbjct: 181 NLLFSATFSDEIRELAKGLVNDP----------VEIDVNPRNQTARTVKQ-WICPVDKKK 229
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+LT L E K+ L+FT T A +L LE GI +A ++ Q +R L F
Sbjct: 230 KPNLLTKLLSERNWKQVLVFTKTKHGANKLSAHLESRGITAAAIHGNKSQGARTKALANF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
AG L+ATD RG+D + V+
Sbjct: 290 KAGEIRVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
NF++P A YVHRIGRTGRA G ++SLVS DE K
Sbjct: 317 NFDLPHVAEDYVHRIGRTGRAGCEGEAISLVSADEFK 353
>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
gi|142982588|sp|A1D1R8.1|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
Length = 819
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 173/372 (46%), Gaps = 68/372 (18%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 421 PDVIIATPGRFIDHMRN----SPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPQS 476
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VDKL ++ L+ P L + D K Q+F + DK L
Sbjct: 477 RQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSKKNTSMNLTQEFVRLRPGREDKRL 532
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L E+ + ++F A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 533 GYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFRE 592
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD L S RG+D K V TVIN+
Sbjct: 593 GKVAFLLATD----------------------------LAS-----RGLDIKGVETVINY 619
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPL 332
E PQ+ Y+HR+GRT RA +G + ++ + + KI +KS V + + + I++
Sbjct: 620 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKI---VKSAVKAGKAQGAKIVS---- 672
Query: 333 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL-----KAHFEVNPKDLD 387
R D A + A + +D E+L EKL +A +V K +
Sbjct: 673 -----------RVVDPA-VADEWAAKAKGLEDEIEEVLQEEKLEKQMAQAEMQVT-KGEN 719
Query: 388 LLKHDKDLSKKP 399
++KH+ ++ +P
Sbjct: 720 MIKHEAEIMSRP 731
>gi|219122480|ref|XP_002181572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406848|gb|EEC46786.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 467
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 137/293 (46%), Gaps = 51/293 (17%)
Query: 29 AALAGPPDIVIATPGCMPKCL--STGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 86
A L PD+++ATPG + + S GV + D ++ILVLDEAD LL G++D++ L
Sbjct: 114 AELRSRPDVIVATPGRLLDHITNSAGV----TLED-IEILVLDEADRLLDLGFQDEVHEL 168
Query: 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD-EVIPKNVQQFWI-- 143
P Q LL SAT ++ VD L +L + P + + + + D EV P+ Q+F
Sbjct: 169 VKACPVQRQTLLFSATMNTKVDDLIQLSMKRPVRVRISDKANSMDIEVAPRLEQEFVRVR 228
Query: 144 ----SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199
+ LL +LT +K+ ++F +T A RL + GIK A L+ L
Sbjct: 229 AGNEGANREGMLLALLT----RTFKKQTIVFFDTKAAAHRLMILCGLCGIKCAELHGNLS 284
Query: 200 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVR 259
Q RL LEEF G D L+ATD R
Sbjct: 285 QQQRLTALEEFRKGDVDVLLATDLA---------------------------------AR 311
Query: 260 GIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
G+D V TVINFEMP A YVHRIGRT RA G S +L+ + +E+
Sbjct: 312 GLDIDRVKTVINFEMPSQVATYVHRIGRTARAGRGGRSCTLIGEGRRHLMKEL 364
>gi|156548270|ref|XP_001601432.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Nasonia
vitripennis]
Length = 460
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 151/319 (47%), Gaps = 54/319 (16%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSL 63
E + +K V + M LA P I+IATPG + L +K F+ SL
Sbjct: 113 EALGASIGVKCVVIVGGMDMMTQSLMLAKKPHIIIATPGRLVDHLEN----TKGFNLRSL 168
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
K LV+DEAD +L+ +E ++ + VIPR + LL SAT + V KL++ L NP
Sbjct: 169 KFLVMDEADRILNMDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLQNP----- 223
Query: 124 PEVGDVKDEVIPK-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
VK EV K +QQ+++ + K +Y++ +L EL +IF +T +
Sbjct: 224 -----VKVEVSTKYQTVEKLQQYYVFIPVKFKDVYLVHILN-ELSGNSFMIFCSTCNNTM 277
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 238
R L L G + L+ ++ QN R+ L +F A LI+TD
Sbjct: 278 RTALLLRSLGFMAVPLHGQMSQNKRIAALTKFKAKNRSILISTDVAS------------- 324
Query: 239 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 298
RG+D +V VINF++P ++ Y+HR+GRT RA +G SV
Sbjct: 325 --------------------RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGISV 364
Query: 299 SLVSPDEMKIFEEIKSFVG 317
+ V+ ++++++ I+ +G
Sbjct: 365 TFVTQYDVELYQRIEQLIG 383
>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
gi|74672247|sp|Q4WRV2.1|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
Af293]
gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
A1163]
Length = 830
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 110/372 (29%), Positives = 174/372 (46%), Gaps = 68/372 (18%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 432 PDVIIATPGRFIDHMRN----SPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 487
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VDKL ++ L+ P L + D K Q+F + DK L
Sbjct: 488 RQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSKKNTSMNLTQEFVRLRPGREDKRL 543
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L E+ + ++F A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 544 GYLLYLCNEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFRE 603
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD L S RG+D K V TVIN+
Sbjct: 604 GKVAFLLATD----------------------------LAS-----RGLDIKGVETVINY 630
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPL 332
E PQ+ Y+HR+GRT RA +G + ++ + + KI +KS V + + + I++
Sbjct: 631 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKI---VKSAVKAGKAQGAKIVS---- 683
Query: 333 LAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKL-----KAHFEVNPKDLD 387
R D A + + A + +D E+L EKL +A +V K +
Sbjct: 684 -----------RVVDPAVA-DEWAAKAKGLEDEIEEVLQEEKLEKQMAQAEMQVT-KGEN 730
Query: 388 LLKHDKDLSKKP 399
L+KH+ ++ +P
Sbjct: 731 LIKHEAEIMSRP 742
>gi|167624613|ref|YP_001674907.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167354635|gb|ABZ77248.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 458
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 146/320 (45%), Gaps = 44/320 (13%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+ L Q K ++ +D ALA P V+ATPG + L Q + L
Sbjct: 103 LRLLVANTQFKATKILGGENFNDQAKALARDPHFVVATPGRLADHLK----QHHLHLNGL 158
Query: 64 KILVLDEADLLLSYGYEDDLKALS-AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYIL 121
++L+LDEAD +L G+ + LK ++ A + Q L+ SAT DV+ + +L P
Sbjct: 159 ELLILDEADRMLDLGFAEQLKLINNAADHKRRQTLMFSATLDHGDVNDIANELLKFP--- 215
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
V + K++ Q C D ILT + E QK+ +IFT T RL
Sbjct: 216 --EHVAIGASNLEHKDITQRIFLCDHLDHKEAILTRILKEEQQKQIIIFTATRQDTDRLA 273
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
L G K+A L+ EL QN+R I++EF+ GL L+ TD
Sbjct: 274 TKLAAEGFKTASLSGELKQNARNQIMDEFSRGLQQILVTTDVAS---------------- 317
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D NV VINF+MP+ A YVHRIGRTGRA G ++SLV
Sbjct: 318 -----------------RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 360
Query: 302 SPDEMKIFEEIKSFVGDDEN 321
P + F ++++F+ N
Sbjct: 361 GPKDWVNFTQVQTFLNKTFN 380
>gi|396488909|ref|XP_003842973.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
Length = 811
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 139/300 (46%), Gaps = 44/300 (14%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS 76
+ D A L PD+VIATPG + +T Q + L+ILVLDEAD +L
Sbjct: 385 MAGGFSTKDQEAVLKTRPDVVIATPGRFIDHMHNTAAFQV----EHLEILVLDEADRMLE 440
Query: 77 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 136
G+E L + IP+ Q +L SAT +S VD+L ++ + P L + D K +
Sbjct: 441 EGFESQLNEILTTIPKSRQTMLFSATMTSTVDRLIRIGMDKPVRLMV----DAKKHTVKG 496
Query: 137 NVQQFW-ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 195
Q+F + + D+ L L + + ++ +IF A R+++ G+K++ L+
Sbjct: 497 LTQEFIRLRQGKEDRRLAYLMYICEKFYNERVIIFFRQKKEAHRVRVVFALCGLKASELH 556
Query: 196 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 255
+ Q R+ +E F +G YL+ATD
Sbjct: 557 GNMSQEQRIQAVEAFRSGKSAYLLATDVAS------------------------------ 586
Query: 256 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKS 314
RG+D KNV TVIN+E PQ Y+HR+GRT RA G + +L + PD + + +K+
Sbjct: 587 ---RGLDIKNVSTVINYEAPQTHDIYMHRVGRTARAGREGRACTLAAEPDRKVVKQAVKA 643
>gi|405120234|gb|AFR95005.1| ATP-dependent RNA helicase DRS1 [Cryptococcus neoformans var.
grubii H99]
Length = 813
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 150/321 (46%), Gaps = 60/321 (18%)
Query: 8 KGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKIL 66
KG + ++ L + + L PDI+IATPG + L+ + SF+ +L +L
Sbjct: 303 KGGLDVRFALLVGGLSLNAQAHTLRTLPDILIATPGRLIDHLT----NTPSFTLSALDVL 358
Query: 67 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 126
V+DEAD +L G+ D+L+ + PR Q +L SAT + VD+L KL L P + +
Sbjct: 359 VIDEADRMLEAGFTDELEEIIKACPRSRQTMLFSATMTDSVDELVKLSLDKPIRVFV--- 415
Query: 127 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 186
D K Q+F S+ + +L L K +++K +IF + +A ++++
Sbjct: 416 -DPKRNTAKGLTQEFVRIRSDDSRSPSLLALCK-RTIREKCIIFFRSKALAHQMRIVFGL 473
Query: 187 FGIKSAILNAELPQ-----------------NSRLHILEEFNAGLFDYLIATDDTQTKEK 229
FG+K+A L+ L Q + RL L +F AG DYL+ATD
Sbjct: 474 FGLKAAELHGNLTQEQGSLPSKYRIGVMLTSSQRLQALNDFKAGTVDYLLATD------- 526
Query: 230 DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTG 289
L S RG+D K V TVIN++MP A Y HR+GRT
Sbjct: 527 ---------------------LAS-----RGLDIKGVETVINYDMPGQLAQYTHRVGRTA 560
Query: 290 RAYNTGASVSLVSPDEMKIFE 310
RA G S+SLV + K+ +
Sbjct: 561 RAGRKGRSISLVGEADRKMLK 581
>gi|415886177|ref|ZP_11548000.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
gi|387588830|gb|EIJ81151.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus MGA3]
Length = 485
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 144/285 (50%), Gaps = 46/285 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ ++ D++K+ VLDEAD +L+ G+ DD++A+ A
Sbjct: 116 ALKKRPHIIVGTPGRILDHINRKTIRL----DNVKMAVLDEADEMLNMGFIDDIEAILAQ 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IP+ Q LL SAT + + ++ + + NP I+ + K+ +P+ ++QF++ E++
Sbjct: 172 IPKERQTLLFSATMPAPIQRMAEKFMKNPQIVRV----QSKEMTVPQ-IEQFYLEVHEKN 226
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + LL ++ + A++F T L L G + ++ +L Q RL +L +
Sbjct: 227 KFDVLTRLLDIQ-SPELAIVFGRTKRRVDELSEALNLRGYMAEGIHGDLSQAKRLSVLRK 285
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F GL D L+ATD RG+D V V
Sbjct: 286 FKEGLIDVLVATD---------------------------------VAARGLDISGVTHV 312
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE---MKIFEE 311
NF++PQ+ YVHRIGRTGRA TG +++ V+P E +KI E+
Sbjct: 313 YNFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPREKAYLKIVEK 357
>gi|118351203|ref|XP_001008880.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|89290647|gb|EAR88635.1| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 643
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 171/378 (45%), Gaps = 60/378 (15%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
A L G P+++IATPG + L S+S D+L++L+ DEAD LL G+E + +
Sbjct: 305 AELRGNPEVIIATPGRLIDHLQN----SRSIDLDNLEVLIFDEADKLLDLGFEAAAQNIV 360
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
R Q LL SAT +S+V+KL + L P + G D++I K +
Sbjct: 361 ENCNRERQTLLFSATLTSEVNKLIDIALRKPIRIQANPDGQTNDKLIQK-----MLRIQH 415
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
D L + + +++ +IF T R+ + FG+K L+ +L QN R+
Sbjct: 416 EDFREAALLAIAAKYYKERTIIFFKTKRQTHRMAIIFGLFGLKVCELHGDLTQNQRIQAF 475
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F G + YL+ATD L S RG+D + V
Sbjct: 476 SDFKEGKYQYLMATD----------------------------LAS-----RGLDIQGVK 502
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 327
VINFE+P Y+HR+GRT RA N G S+++ E+K +++ EN+D +
Sbjct: 503 AVINFELPSEVTRYIHRVGRTARAGNEGISLTIGLDAELKTLKKMLK-----ENKDK--M 555
Query: 328 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 387
L+ ++ + + ++V + V K+ E + LR KA E+ + +
Sbjct: 556 MEKVSLSVETLQKYKEKIQNVEREVVKVLEEEQAERQLR---------KAEMELQKAE-N 605
Query: 388 LLKHDKDLSKKPPASHLR 405
++KH ++ KP + +
Sbjct: 606 MIKHKDEIMNKPKKTWFQ 623
>gi|358392056|gb|EHK41460.1| hypothetical protein TRIATDRAFT_162817, partial [Trichoderma
atroviride IMI 206040]
Length = 760
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 144/297 (48%), Gaps = 48/297 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SFS D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 367 PDVIIATPGRFIDHMRN----SASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 422
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD+L K+ L+ P + + D + + +Q+F E ++
Sbjct: 423 RQTMLFSATMTSTVDRLIKVGLNKPVRVMV----DSQKKTAGTLIQEFVRLRPGREEKRM 478
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+ + K +K +IF A R ++ G A L+ + Q R+ +E F
Sbjct: 479 GYLAHICK-NFYTEKVIIFFRQKKDAHRARIIFGLLGFSCAELHGSMNQTQRIASVENFR 537
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G YL+ATD L S RG+D K V TVIN
Sbjct: 538 DGKVSYLLATD----------------------------LAS-----RGLDIKGVDTVIN 564
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
+E PQ+ YVHR+GRT RA TG SV+L + + K+ +K+ V + + S II+
Sbjct: 565 YEAPQSVEIYVHRVGRTARAGRTGISVTLAAEPDRKV---VKAAVKAGKAQGSKIIS 618
>gi|416919360|ref|ZP_11932532.1| ATP-dependent RNA helicase, partial [Burkholderia sp. TJI49]
gi|325527064|gb|EGD04490.1| ATP-dependent RNA helicase [Burkholderia sp. TJI49]
Length = 391
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 47 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 102
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 103 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 157
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 158 QLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQALDAFKRGEI 216
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 217 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 243
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 244 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 284
>gi|333909234|ref|YP_004482820.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333479240|gb|AEF55901.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 457
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 141/281 (50%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + + L+ D L++L+LDEAD +L G+ D+K + A++P+ Q
Sbjct: 125 DVLIATPGRLLDLYNQNALKF----DQLEVLILDEADRMLDMGFIHDIKKVLAILPKKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ L K +++NP E+ K+V+Q W+ ++ + + +L
Sbjct: 181 NLLFSATFSPEIRDLAKGLVNNPV-----EISVTPRNATAKSVEQ-WLHPVDKKQKIDLL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L + ++AL+F+ T A ++ LE GI+++ ++ Q +R L +F G
Sbjct: 235 IDLIADGQWQQALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALADFKEGRI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + + V+NF++P
Sbjct: 295 RILVATDI---------------------------------AARGIDIEELPHVVNFDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
A YVHRIGRTGRA TG ++SLVS DE++ + I+
Sbjct: 322 DVAEDYVHRIGRTGRANATGQAISLVSADELEQLKAIERLT 362
>gi|342889281|gb|EGU88436.1| hypothetical protein FOXB_01039 [Fusarium oxysporum Fo5176]
Length = 797
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 138/277 (49%), Gaps = 45/277 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SFS D+++I+VLDEAD +L G+ D+L + +P+
Sbjct: 380 PDVIIATPGRFIDHMRN----SASFSVDTVEIMVLDEADRMLEDGFADELNEILTTLPKS 435
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD+L K+ L+ P + + D + + + VQ+F E ++
Sbjct: 436 RQTMLFSATMTSTVDRLIKIGLNKPARVMV----DSQKKTVTTLVQEFVRLRPGREEKRM 491
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+ + K L +++ +IF A R ++ G+ A L+ + Q R+ +E+F
Sbjct: 492 GYLAHVCK-NLYKERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDFR 550
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G YL+ATD L S RG+D K V TVIN
Sbjct: 551 DGKVAYLLATD----------------------------LAS-----RGLDIKGVDTVIN 577
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
+E PQ+ YVHR+GRT RA G +++L S + K+
Sbjct: 578 YEAPQSLEIYVHRVGRTARAGRKGTALTLASETDRKV 614
>gi|169609619|ref|XP_001798228.1| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
gi|143462316|sp|Q0UK12.2|RRP3_PHANO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|160701880|gb|EAT84178.2| hypothetical protein SNOG_07902 [Phaeosphaeria nodorum SN15]
Length = 546
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 150/309 (48%), Gaps = 44/309 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ +K L M AL+ P I++A+PG + L +K FS LK LVLD
Sbjct: 210 INVKCATLVGGMDMVPQAIALSKRPHIIVASPGRLLDHLEN----TKGFSLKHLKYLVLD 265
Query: 70 EADLLLSYGYEDDLKALSAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 128
EAD LL + D L + V+PR L SAT SS V+ L++ L NP ++ +
Sbjct: 266 EADRLLDLDFGDSLDKIFKVLPRDDRHTYLFSATMSSKVESLQRAALKNPVRVS---ISS 322
Query: 129 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
+V+ +Q + + + K LY++ LL + + ++FT T++ RL + L G
Sbjct: 323 SSHQVVSTLLQSYML-IPHKYKDLYLIHLLN-DNIGHATILFTRTVNETQRLAVLLRTLG 380
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
++ L+ +L Q++RL L +F A D L+ATD
Sbjct: 381 FQALPLHGQLSQSNRLGALNKFKAKARDILVATD-------------------------- 414
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D +V V+NF++P ++ YVHR+GRT RA +G +VS V+ +++I
Sbjct: 415 -------VAARGLDIPSVDLVVNFDLPHDSETYVHRVGRTARAGKSGKAVSFVTQYDLEI 467
Query: 309 FEEIKSFVG 317
F+ I+ +G
Sbjct: 468 FQRIEHALG 476
>gi|449279156|gb|EMC86802.1| putative ATP-dependent RNA helicase DDX47, partial [Columba livia]
Length = 453
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P ++IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 140 ALAKKPHVIIATPGRLVDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 195
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 196 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 250
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ QN RL L
Sbjct: 251 FKDSYLVHILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGALN 309
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 310 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 336
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+ +G
Sbjct: 337 VINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIG 385
>gi|372272242|ref|ZP_09508290.1| ATP-dependent RNA helicase RhlB, partial [Marinobacterium stanieri
S30]
Length = 599
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/318 (31%), Positives = 149/318 (46%), Gaps = 49/318 (15%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPP-DIVIATPGCMPKCLSTGVLQSKSFS-DS 62
E L VV L M R ALA P DI++ATPG + ++SK
Sbjct: 153 EGLSAHADLSVVSLVGGMDYERQRKALAAKPVDILVATPGRL-----IDFVRSKEVDLYQ 207
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGC---QCLLMSATSSSDVDKLKKLILHNPY 119
+++LVLDEAD +LS G+ D++ + PR Q LL SAT + DV +L + +P
Sbjct: 208 VEVLVLDEADRMLSMGFIPDVRTIIRQTPRKGADRQTLLYSATFTDDVMRLAEQWTQDPV 267
Query: 120 ILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFR 179
+ + D V K F +S +E+ +LL L++ +++ A++F N
Sbjct: 268 TIEIESEHKTTDNVAQK---VFLVSSNEKYQLLR--NYLRINGIER-AIVFGNRRHETRA 321
Query: 180 LKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239
L L K GIK+A+++ E+PQN RL LE+F G + L+ATD
Sbjct: 322 LADRLSKDGIKAALMSGEIPQNKRLRTLEDFRNGKIEVLVATDVAG-------------- 367
Query: 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVS 299
RGI V VIN+++P++A YVHRIGRTGRA TG S+
Sbjct: 368 -------------------RGIHIDGVTHVINYQLPEDADDYVHRIGRTGRAGATGTSIC 408
Query: 300 LVSPDEMKIFEEIKSFVG 317
D+ + +I+ G
Sbjct: 409 FACEDDSFLIPDIEKETG 426
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 146/311 (46%), Gaps = 57/311 (18%)
Query: 30 ALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
AL PDIV+ATPG + LS G+ + L +++LDEAD LL G+ +++
Sbjct: 302 ALRSMPDIVVATPGRIIDHLRNSLSVGL-------EDLAVVILDEADRLLELGFSAEIQE 354
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQQF 141
L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+ +++
Sbjct: 355 LIRMCPKRRQTMLFSATMTEEIDELIKLSLNKPVRLEADPSLKRPATLTEEVV--RIRRA 412
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
S E +L L L+ ++ +IF+ T A RLK+ G+K+A L+ L Q
Sbjct: 413 RESNQE-----AVLLALCLKTFKRSVIIFSGTKQSAHRLKIVFGLSGMKAAELHGNLTQA 467
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
RL LE F D+LIATD RGI
Sbjct: 468 QRLEALELFKKQEVDFLIATD---------------------------------VAARGI 494
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 495 DIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRSLLKAIAKKAGSQLK 554
Query: 322 EDSNIIAPFPL 332
S I+A P+
Sbjct: 555 --SRIVAEKPV 563
>gi|322703237|gb|EFY94849.1| ATP-dependent RNA helicase drs-1 [Metarhizium anisopliae ARSEF 23]
Length = 944
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 144/298 (48%), Gaps = 44/298 (14%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDI++ATPG + S SF+ D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 378 PDIIVATPGRFIDHMRN----SASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 433
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +S VD+L ++ L+ P L + D + + + VQ+F + DK +
Sbjct: 434 RQTMLFSATMTSTVDRLIRVGLNKPVRLMV----DSQKKTVTTLVQEFVRLRPGREDKRM 489
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L ++ +IF A R ++ G+ A L+ + Q+ R+ +E F
Sbjct: 490 GYLAHLCKTFYHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRISSVEAFRD 549
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G YL+ATD L S RG+D K V TVIN+
Sbjct: 550 GKVSYLLATD----------------------------LAS-----RGLDIKGVDTVINY 576
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE-EIKSFVGDDENEDSNIIAP 329
E PQ+ YVHR+GRT RA G +V+L + + K+ + +K+ S +IAP
Sbjct: 577 EAPQSLEIYVHRVGRTARAGRKGTAVTLAAEGDRKVVKAAVKAGKAQGAKITSRVIAP 634
>gi|393218427|gb|EJD03915.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 782
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 138/284 (48%), Gaps = 43/284 (15%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
A L PDIVIATPG + L S SF ++L +L+LDEAD +LS G+ D+LK +
Sbjct: 303 AELRTRPDIVIATPGRLIDHLR----NSPSFGLETLDVLILDEADRMLSDGFADELKEII 358
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCS 146
P Q +L SAT + DVD L ++ L+ P L + D K +Q+F +
Sbjct: 359 QACPTSRQTMLFSATMTDDVDALVRMSLNRPVKLFV----DPKRSTARGLIQEFVRVRAG 414
Query: 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
+ + +L L ++ ++F + +A ++++ G+K+ L+ +L Q RL
Sbjct: 415 KEAERAALLVALCKRTFKQGVIVFFRSKKLAHQMRVVFGILGMKAEELHGDLTQEQRLRA 474
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L+ F G D+L+ATD L S RG+D K +
Sbjct: 475 LQLFRDGAVDFLMATD----------------------------LAS-----RGLDIKGI 501
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
V+N++MP A Y+HR+GRT RA G SV+LV + KI +
Sbjct: 502 EAVVNYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKILK 545
>gi|54302911|ref|YP_132904.1| ATP-dependent RNA helicase RhlE [Photobacterium profundum SS9]
gi|46916335|emb|CAG23104.1| putative ATP-dependent RNA helicase RhlE [Photobacterium profundum
SS9]
Length = 471
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 136/286 (47%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + Q D +++LVLDEAD +L G+ D++ L A +P+ Q
Sbjct: 131 DVLVATPGRLLDLYN----QRAVRFDQIEVLVLDEADRMLDMGFIRDIRKLLAAMPKQRQ 186
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ +L K +++NP V+ V P+N V+Q WI ++ +
Sbjct: 187 NLLFSATFSDEIRQLAKGLVNNP----------VEISVTPRNATAPTVKQ-WICPVDKSR 235
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+LT L E + L+FT T A RL LE GIK+A ++ Q +R L F
Sbjct: 236 KANLLTKLLKENNWGQVLVFTKTKHGANRLTTHLEGRGIKAAAIHGNKSQGARTKALANF 295
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+ L+ATD RG+D + + V+
Sbjct: 296 KSNEIQVLVATDI---------------------------------AARGLDIEQLPQVV 322
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NFE+P A YVHRIGRTGRA G ++SLV DE K I+ +
Sbjct: 323 NFELPHVAEDYVHRIGRTGRAGCEGQAISLVCADEYKDLAAIERLI 368
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKHGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ L+F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 250 QLLR-DRGLKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
Length = 478
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 145/289 (50%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L ++K FS +LK LV+DEAD LL + + L
Sbjct: 171 ALGKKPHIIVATPGRLVDHLE----KTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLK 226
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
IPR + L SAT SS V+ L++ L +P ++ V K + + +Q + +R
Sbjct: 227 FIPRERRTYLFSATLSSKVESLQRASLRDPVRVS---VSSNKYQTVSTLLQNLLVVPQKR 283
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ L+ E K ++FT T+ R+ + L G + L+ +L Q++RL L
Sbjct: 284 -KDTYLIYLVN-EFTGKSTIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALN 341
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G D L+ATD RG+D V
Sbjct: 342 KFRSGTRDILVATDVA---------------------------------ARGLDISKVDV 368
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+N+++PQ++ Y+HR+GRT RA +G ++SLV+ +++IF+ I++ +G
Sbjct: 369 VLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEIFQRIEAALG 417
>gi|303317730|ref|XP_003068867.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108548|gb|EER26722.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 840
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 161/345 (46%), Gaps = 51/345 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
+ QL + L PD++IATPG + S SF+ D+L+ILVLDEA
Sbjct: 419 ITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEA 474
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 475 DRMLEDGFADELNEILNTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSKK 530
Query: 132 EVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ VQ+F + K + L LL + + ++F A R ++ G+K
Sbjct: 531 HTVGTLVQEFVRLRPGREGKRMGYLVLLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLK 590
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+A L+ + Q R++ +E F G +L+ATD
Sbjct: 591 AAELHGSMSQEQRINAVEAFRDGKVPFLLATD---------------------------- 622
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
L S RG+D K V +VIN+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 623 LAS-----RGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV-- 675
Query: 311 EIKSFVGDDENEDSNIIAPF--PLLAQ---NAVESLRYRAEDVAK 350
+K+ V + + I++ P +A + VE ++ ED+ K
Sbjct: 676 -VKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILK 719
>gi|336310213|ref|ZP_08565185.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
gi|335865943|gb|EGM70934.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
Length = 470
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 142/286 (49%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + Q + L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 125 DVLVATPGRLMDLYN----QKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q+ + K
Sbjct: 181 NLMFSATFSDEIRQLAKGLVNNP----------VEISVTPRNAAATTVKQWVCPVDKSQK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K + Q + L+F+ T A RL LE+ GIK+A ++ Q +R L +F
Sbjct: 231 SALLIQLIKQQDWQ-QVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 290 KTGQVRVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ +
Sbjct: 317 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDIERLI 362
>gi|398407733|ref|XP_003855332.1| hypothetical protein MYCGRDRAFT_99289 [Zymoseptoria tritici IPO323]
gi|339475216|gb|EGP90308.1| hypothetical protein MYCGRDRAFT_99289 [Zymoseptoria tritici IPO323]
Length = 740
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 151/319 (47%), Gaps = 47/319 (14%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDIVIATPG S SF+ +++ILVLDEAD +L G+ D+L + IP+
Sbjct: 348 PDIVIATPGRFIDLER----NSASFTVSTVEILVLDEADRMLEEGFADELNEILNKIPKS 403
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD L ++ L P L + D + + + VQ+F E +L
Sbjct: 404 RQTMLFSATMTSKVDDLIRVGLQRPVRLLV----DAQRQTVSGLVQEFVRLRPGRESKRL 459
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ L + + + +IF A R+++ G+ +A L+ + Q R++ +E F
Sbjct: 460 AYLMNLAE-SVYTDRVIIFFRQKKEAHRVRVIFALCGLNAAELHGSMSQEQRINAIESFR 518
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +YL+ATD L S RG+D K + TVIN
Sbjct: 519 TGKANYLLATD----------------------------LAS-----RGLDIKGIETVIN 545
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAPF 330
+E PQ+ Y+HR+GRT RA TG S +L + PD + +KS I P
Sbjct: 546 YEAPQSHEIYLHRVGRTARAGRTGRSCTLAAEPDRKVVKAAVKSGKAQGAVIKQRTIDPS 605
Query: 331 PLLA-QNAVESLRYRAEDV 348
+ A Q +E+L EDV
Sbjct: 606 DVDAWQTRLEALESEVEDV 624
>gi|336394535|ref|ZP_08575934.1| putative ATP-dependent RNA helicase [Lactobacillus farciminis KCTC
3681]
Length = 507
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 46/306 (15%)
Query: 14 KVVQLTSSMPASDLRA---ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 70
K V++ S SD+R AL P IV+ TPG M ++ L+ + +K +VLDE
Sbjct: 96 KKVKVQSVYGGSDIRRQIRALKNHPQIVVGTPGRMLDHINRHTLKLHN----VKTVVLDE 151
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
AD +L G+ +D++++ + +P Q LL SAT + K+ ++ P ++ +
Sbjct: 152 ADEMLDMGFVEDIESILSNVPNKHQTLLFSATMPKPIMKIADKFMNEPEVVKIKS----- 206
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
E+ ++Q+++ + +K + L ++ + ALIF T L L+ G
Sbjct: 207 KELTADKIEQYFVKARDYEKFDLMTRLFDVQ-APELALIFGRTKRRVDELTRGLQARGYN 265
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ ++ +L Q+ R +L +F AG D+L+ATD
Sbjct: 266 AEGIHGDLSQDKRTSVLRKFKAGKLDFLVATD---------------------------- 297
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
RG+D V V N+++PQ+ YVHRIGRTGRA ++G SV+ V+P+EM
Sbjct: 298 -----VAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGVSVTFVTPNEMGYLR 352
Query: 311 EIKSFV 316
I++
Sbjct: 353 TIENLT 358
>gi|260777929|ref|ZP_05886822.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
gi|260605942|gb|EEX32227.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
Length = 398
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 142/291 (48%), Gaps = 45/291 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+ AL DI++ATPG + + + +++LVLDEAD +L G+ DD+ +
Sbjct: 117 KQALIEGVDILVATPGRLIDMYGKRAVHF----EEVEMLVLDEADRMLDMGFIDDINKIL 172
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P Q LL SAT S+ V L K +H+PY E+ ++ KN++Q W+ +
Sbjct: 173 DRLPTDIQHLLFSATLSNKVRDLAKTAVHDPY-----EISIAANQASKKNIEQ-WLITVD 226
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+DK +L+ L E +ALIF T A +L LEK GI++ ++ Q R +L
Sbjct: 227 KDKKSALLSHLIKENDWDQALIFIETKHGAAKLAQQLEKRGIEAEAFHSGRSQAVRSKLL 286
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 266
E+F AG Y+IAT GV RGID + +
Sbjct: 287 EDFKAGKIQYMIAT----------------------------------GVGARGIDIEGL 312
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 313 TRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIESRLG 363
>gi|84468282|dbj|BAE71224.1| putative replication protein A1 [Trifolium pratense]
Length = 440
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 141/290 (48%), Gaps = 48/290 (16%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAV 89
+A P I++ TPG + L +K FS S LK LVLDEAD LL+ +E+ L + +
Sbjct: 126 IAKHPHIIVGTPGRVLDHLKN----TKGFSLSKLKYLVLDEADRLLNEDFEESLNEILGM 181
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IPR + L SAT + V+KL+++ L NP + K + QQ+ ++R
Sbjct: 182 IPRERRTFLFSATMTKKVEKLQRVCLRNPVKIE----ASTKYSTVDTLKQQYRFLPAKRK 237
Query: 150 K--LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
L+YILT E+ +++FT T D L L L G+K+ +N + Q RL L
Sbjct: 238 DCYLVYILT----EMAGSTSMVFTRTCDATRLLALILRNLGLKAIPINGHMSQPKRLGAL 293
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F +G + L+ TD RG+D V
Sbjct: 294 NKFKSGDCNILLCTDVAS---------------------------------RGLDIPAVD 320
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ + +I+ +G
Sbjct: 321 MVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIG 370
>gi|291001041|ref|XP_002683087.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
gi|284096716|gb|EFC50343.1| DEAD-box ATP-dependent RNA helicase [Naegleria gruberi]
Length = 887
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 138/285 (48%), Gaps = 44/285 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
L P+I+IATPG + L L S +F D +++L+LDEAD LL G+E +K +
Sbjct: 388 LQSKPEIIIATPGRVVDHL----LNSPNFRLDEVEVLILDEADRLLELGFEPQIKTILDH 443
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IP Q +L SAT + D+++L KL L NP ++ D + V Q+F + +
Sbjct: 444 IPTARQTMLFSATMTDDIEQLVKLSLKNPIRVSC----DSRTGVASGLTQEFIKLADDEN 499
Query: 150 KLLYILTLLKL--ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
++ LL L + +IF NT M +LK+ L G+K + L++ L Q RL L
Sbjct: 500 IIMKQAILLSLCTRSFPSEVIIFCNTKSMVRKLKMLLFLKGLKVSELSSSLTQAVRLKEL 559
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F + D+L+ TD RG+D K V
Sbjct: 560 YKFASHETDFLVCTD---------------------------------VASRGLDIKGVK 586
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
TVINF+MP N Y+HR+GRT RA +G +VS+ S + I +I
Sbjct: 587 TVINFDMPLNLKTYIHRVGRTARAGASGVAVSMSSESSIAILRKI 631
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 250 QLLR-DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|119186507|ref|XP_001243860.1| hypothetical protein CIMG_03301 [Coccidioides immitis RS]
gi|118595360|sp|Q1E2B2.1|DRS1_COCIM RecName: Full=ATP-dependent RNA helicase DRS1
gi|392870577|gb|EAS32387.2| ATP-dependent RNA helicase DRS1 [Coccidioides immitis RS]
Length = 840
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 161/345 (46%), Gaps = 51/345 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
+ QL + L PD++IATPG + S SF+ D+L+ILVLDEA
Sbjct: 419 ITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEA 474
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 475 DRMLEDGFADELNEILNTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSKK 530
Query: 132 EVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ VQ+F + K + L LL + + ++F A R ++ G+K
Sbjct: 531 HTVGTLVQEFVRLRPGREGKRMGYLVLLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLK 590
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+A L+ + Q R++ +E F G +L+ATD
Sbjct: 591 AAELHGSMSQEQRINAVEAFRDGKVPFLLATD---------------------------- 622
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
L S RG+D K V +VIN+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 623 LAS-----RGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV-- 675
Query: 311 EIKSFVGDDENEDSNIIAPF--PLLAQ---NAVESLRYRAEDVAK 350
+K+ V + + I++ P +A + VE ++ ED+ K
Sbjct: 676 -VKAAVKAGRAQGAKIVSRVVDPAVADEWASKVEEMQAEIEDILK 719
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 250 QLLR-DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|261251316|ref|ZP_05943890.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417956550|ref|ZP_12599514.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938189|gb|EEX94177.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342809390|gb|EGU44509.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 396
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 143/291 (49%), Gaps = 45/291 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+ AL DI++ATPG + + + + + ++ILVLDEAD +L G+ +D+ +
Sbjct: 117 KQALIEGVDILVATPGRLLDMYA----KRAVYFEEVEILVLDEADRMLDMGFIEDINKIL 172
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P Q LL SAT S+ V L K +HNPY E+ ++ KN++Q W+ +
Sbjct: 173 DRLPTDIQNLLFSATLSNKVRDLAKTAVHNPY-----EISIAANQASKKNIEQ-WLITVD 226
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+D +L+ L E +ALIF T A +L LEK GI++ ++ Q R +L
Sbjct: 227 KDMKSALLSHLIKENEWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAIRSKLL 286
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 266
E+F AG Y+IAT GV RGID + +
Sbjct: 287 EDFKAGKIKYMIAT----------------------------------GVGARGIDIEGL 312
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 313 SRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIESRLG 363
>gi|149908418|ref|ZP_01897081.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
gi|149808581|gb|EDM68516.1| putative ATP-dependent RNA helicase RhlE [Moritella sp. PE36]
Length = 449
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 135/272 (49%), Gaps = 43/272 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + ++ L+ILVLDEAD +L G+ D++ + AV+P+ Q
Sbjct: 125 DILVATPGRLLDLYNQNAIRFHQ----LEILVLDEADRMLDMGFLRDIRKILAVLPQKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S D+ +L + ++++P E+ K+V+Q W+ ++ K +L
Sbjct: 181 NLLFSATFSDDIRQLARGLINDPV-----EISVTPRNAAAKSVEQ-WMHPVDKKKKALLL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
T L E K+ L+FT T A +L LE+ GI +A ++ Q++R L F +G
Sbjct: 235 THLIKENDWKQVLVFTKTKHGANKLTKHLEEQGINAAAIHGNKSQSARTKALANFKSGEV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
LIATD RGID + V+NF++P
Sbjct: 295 RALIATDI---------------------------------AARGIDIVQLPQVVNFDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
YVHRIGRTGRA + G ++SLV DEMK
Sbjct: 322 NVPEDYVHRIGRTGRAGSEGTAISLVCHDEMK 353
>gi|414589947|tpg|DAA40518.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 786
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 146/311 (46%), Gaps = 57/311 (18%)
Query: 30 ALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
AL PDIV+ATPG + LS G+ + L +++LDEAD LL G+ +++
Sbjct: 300 ALRSMPDIVVATPGRIIDHLRNSLSVGL-------EDLAVVILDEADRLLELGFSAEIQE 352
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQQF 141
L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+ +++
Sbjct: 353 LIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVV--RIRRA 410
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
S E +L L L+ ++ +IF+ T A RLK+ G+K+A L+ L Q
Sbjct: 411 RESNQE-----AVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQA 465
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
RL LE F D+LIATD RGI
Sbjct: 466 QRLEALELFKKKEVDFLIATD---------------------------------VAARGI 492
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 493 DIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQLK 552
Query: 322 EDSNIIAPFPL 332
S I+A P+
Sbjct: 553 --SRIVAEKPV 561
>gi|414589946|tpg|DAA40517.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 773
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 146/311 (46%), Gaps = 57/311 (18%)
Query: 30 ALAGPPDIVIATPG----CMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
AL PDIV+ATPG + LS G+ + L +++LDEAD LL G+ +++
Sbjct: 284 ALRSMPDIVVATPGRIIDHLRNSLSVGL-------EDLAVVILDEADRLLELGFSAEIQE 336
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGDVKDEVIPKNVQQF 141
L + P+ Q +L SAT + ++D+L KL L+ P L +L + +EV+ +++
Sbjct: 337 LIRMCPKRRQTMLFSATMTEEIDELVKLSLNKPVRLEADPSLKRPATLTEEVV--RIRRA 394
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
S E +L L L+ ++ +IF+ T A RLK+ G+K+A L+ L Q
Sbjct: 395 RESNQE-----AVLLALCLKTFKRSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQA 449
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
RL LE F D+LIATD RGI
Sbjct: 450 QRLEALELFKKKEVDFLIATD---------------------------------VAARGI 476
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D V TVINF P++ Y+HR+GRT RA G +V+ V+ D+ + + I G
Sbjct: 477 DIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDDDRCLLKAIAKKAGSQLK 536
Query: 322 EDSNIIAPFPL 332
S I+A P+
Sbjct: 537 --SRIVAEKPV 545
>gi|358055869|dbj|GAA98214.1| hypothetical protein E5Q_04897 [Mixia osmundae IAM 14324]
Length = 835
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 148/307 (48%), Gaps = 52/307 (16%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLK 64
LC G + LKV + A L PD+V++TPG L V + +F+ DSL+
Sbjct: 372 LCVGGLSLKVQE-----------AELRQRPDVVVSTPGR----LIDHVRNTSTFTLDSLE 416
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
IL++DEAD +L G+ D+L + PR Q LL SAT + DV++L +L L P + +
Sbjct: 417 ILIIDEADRILEEGFRDELTEIIKECPRSRQSLLFSATITEDVNELARLSLDKPVRIKID 476
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
E G + ++ + ++ + + R+ L + + + +IF + A R ++ L
Sbjct: 477 ETGTTVESLMQEFLRIRKDTPASREAALLAIC---QRTFRGQTIIFFRSKQAAHRARILL 533
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244
G+ + L+ +L Q RL L+ F G +L ATD
Sbjct: 534 GLCGLAAEELHGDLSQEQRLQSLQNFKEGTATHLCATD---------------------- 571
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
L S RG+D K V +VINFEMP + Y+HR+GRT RA N G +++LV
Sbjct: 572 ------LAS-----RGLDIKGVQSVINFEMPGSFDIYLHRVGRTARAGNAGRALTLVGDS 620
Query: 305 EMKIFEE 311
+ K+ ++
Sbjct: 621 DRKMVKQ 627
>gi|343502139|ref|ZP_08739999.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|418479314|ref|ZP_13048397.1| ATP-dependent RNA helicase RhlE [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342815415|gb|EGU50334.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|384573053|gb|EIF03556.1| ATP-dependent RNA helicase RhlE [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 398
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 151/320 (47%), Gaps = 56/320 (17%)
Query: 10 QVQLKVVQLTSSMPASDL-----------RAALAGPPDIVIATPGCMPKCLSTGVLQSKS 58
QV+ K+ + +P + L + AL DI++ATPG + +
Sbjct: 88 QVEQKIQDYSQHLPLTSLAMYGGVDEQAQKQALIEGVDILVATPGRLIDMYGKRAVHF-- 145
Query: 59 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
+ +++LVLDEAD +L G+ DD+ + +P Q LL SAT S+ V L K +H+P
Sbjct: 146 --EEVEVLVLDEADRMLDMGFIDDINKILDRLPTDIQNLLFSATLSNKVRDLAKTAVHDP 203
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
Y E+ ++ KN++Q W+ ++DK +L+ L E +ALIF T A
Sbjct: 204 Y-----EISIAANQASKKNIEQ-WLITVDKDKKSALLSHLINENDWDQALIFIETKHGAA 257
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 238
+L LEK GI + ++ Q R +LE+F AG Y+IAT
Sbjct: 258 KLASQLEKRGITAEPFHSGRSQAVRSQLLEDFKAGKIKYMIAT----------------- 300
Query: 239 DSRKSKKHPKAKLDSEFGV-VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
GV RGID + + VIN+++P A YVHRIGRTGRA G +
Sbjct: 301 -----------------GVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADAQGEA 343
Query: 298 VSLVSPDEMKIFEEIKSFVG 317
+S VS D K I+S +G
Sbjct: 344 ISFVSKDNFKNLCMIESRLG 363
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 161 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 216
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 217 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKHGAVV 271
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ L+F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 272 QLLR-DRGLKQVLVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 330
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 331 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 357
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 358 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 398
>gi|224096618|ref|XP_002310673.1| predicted protein [Populus trichocarpa]
gi|222853576|gb|EEE91123.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 140/288 (48%), Gaps = 44/288 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P IV+ATPG + LS +K FS +LK LVLDEAD LL+ +E L + V
Sbjct: 145 LAKRPHIVVATPGRLLDHLSN----TKGFSLRTLKYLVLDEADRLLNEEFEKSLDEILNV 200
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IPR + L SAT + V KL++ L NP + D + K +F S +
Sbjct: 201 IPRDRKTYLFSATMTKKVKKLQRACLRNPVKIEAASKYSTVDTL--KQQYRFVPSKHKDC 258
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
L+YILT E+ A++FT T D L L L G+++ +N + Q RL L +
Sbjct: 259 YLVYILT----EMSNSTAMVFTRTCDATSFLALVLRNLGLRAIPINGHMSQPKRLGALNK 314
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F A + LI TD RG+D +V V
Sbjct: 315 FKARECNVLICTDVAS---------------------------------RGLDIPSVDMV 341
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
IN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ + +I++ +G
Sbjct: 342 INYDVPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYLQIENLIG 389
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 250 QLLR-DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|448090292|ref|XP_004197032.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|448094692|ref|XP_004198063.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359378454|emb|CCE84713.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359379485|emb|CCE83682.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
Length = 500
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/306 (30%), Positives = 145/306 (47%), Gaps = 44/306 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
L+ V + M D L P I++ATPG + L +K FS +LK LV+DEA
Sbjct: 186 LRTVCIVGGMDMMDQARDLMRRPHILVATPGRIMDHLE----HTKGFSLKNLKYLVMDEA 241
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D LL + L + VIP L SAT +S V+KL++ LHNP + + D
Sbjct: 242 DRLLDMDFGPALDKILKVIPTQRTTYLFSATMTSKVEKLQRASLHNPVKVAVSTKYQTAD 301
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
N+ Q + S+ K Y++ LL E V K ++FT T + R L G +
Sbjct: 302 -----NLVQSMMLVSDGYKNTYLIHLLN-EFVGKSIIVFTRTCAHSQRTSLLARILGFSA 355
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
L+ +L Q+ RL L +F +G + L+ATD
Sbjct: 356 VPLHGQLSQSQRLGSLNKFKSGKSNILVATD----------------------------- 386
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D +V VIN+++P ++ Y+HR+GRT RA +G S+SLV+ +++++
Sbjct: 387 ----VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLELYLR 442
Query: 312 IKSFVG 317
I++ +G
Sbjct: 443 IENVLG 448
>gi|56119032|ref|NP_001007854.1| probable ATP-dependent RNA helicase DDX47 [Gallus gallus]
gi|53130308|emb|CAG31483.1| hypothetical protein RCJMB04_6o10 [Gallus gallus]
Length = 453
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 139 ALAKKPHIIIATPGRLVDHLEN----TKGFNLRALKFLVMDEADRILNMDFETEVDKILK 194
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 195 VIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 249
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ QN RL L
Sbjct: 250 FKDSYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLN 308
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 309 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 335
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+ +G
Sbjct: 336 VINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIG 384
>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase [Sulfurimonas denitrificans DSM 1251]
gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 398
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 144/291 (49%), Gaps = 43/291 (14%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
+AL DIVIATPG + LS + K ++ LVLDEAD +L G+ +D+K + A
Sbjct: 118 SALRKGVDIVIATPGRLLDHLSQKSIDLKD----VEFLVLDEADRMLDMGFINDIKKVLA 173
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+P+ Q LL SAT S ++ KL +L++P ++ + + ++++Q +
Sbjct: 174 VLPKNKQTLLFSATYSDEIKKLSDRLLNSPVLIEVE-----RPNKTAQSIKQIVYPVDKE 228
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K ++ L+K E ++ L+FT T A +L LEK GI S+ ++ QN+R+ L+
Sbjct: 229 RKRELLVHLIK-EGKWQQVLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQ 287
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
EF G L+ATD RGID +
Sbjct: 288 EFKDGDIRVLVATDIA---------------------------------ARGIDIDQLPH 314
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
VIN+E+P YVHRIGRTGRA ++G ++SLV DE + I+ + D
Sbjct: 315 VINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYLSSIEKLIKTD 365
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 161 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 216
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 217 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 271
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 272 QLLR-DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 330
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 331 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 357
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 358 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 398
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 250 QLLR-DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|323494679|ref|ZP_08099782.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323311112|gb|EGA64273.1| DNA and RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 398
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 152/320 (47%), Gaps = 56/320 (17%)
Query: 10 QVQLKVVQLTSSMPASDL-----------RAALAGPPDIVIATPGCMPKCLSTGVLQSKS 58
QV+ KV + ++P + L + AL DI++ATPG + +
Sbjct: 88 QVEQKVQDYSKNLPLTSLAMYGGVDEASQKQALIDGVDILVATPGRLIDMYGKRAVHF-- 145
Query: 59 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
D +++LVLDEAD +L G+ +D+ + +P Q LL SAT S+ V L K +H+P
Sbjct: 146 --DEVEVLVLDEADRMLDMGFIEDINKILDRLPTDIQHLLFSATLSNKVRDLAKTAVHDP 203
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
Y E+ ++ KN++Q W+ ++DK +L+ L E +ALIF T A
Sbjct: 204 Y-----EISIAANQASKKNIEQ-WLITVDKDKKSALLSHLINENDWDQALIFIETKHGAA 257
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 238
+L LEK GI + ++ Q R +L +F AG Y+IAT
Sbjct: 258 KLASQLEKRGIIAEAFHSGRSQAVRSQLLADFKAGKIKYMIAT----------------- 300
Query: 239 DSRKSKKHPKAKLDSEFGV-VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
GV RGID + + VIN+++P A YVHRIGRTGRA +G +
Sbjct: 301 -----------------GVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADASGEA 343
Query: 298 VSLVSPDEMKIFEEIKSFVG 317
+S VS D K I+S +G
Sbjct: 344 ISFVSKDNFKNLCMIESRLG 363
>gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 165/360 (45%), Gaps = 55/360 (15%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ L+ L + AL P +++ATPG + +S +K FS SLK LVLD
Sbjct: 116 ISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMS----DTKGFSLKSLKYLVLD 171
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL+ +E L + IPR + L SAT + V KL++ L NP + E
Sbjct: 172 EADRLLNEDFEKSLNQILEEIPRERKTFLFSATMTKKVRKLQRACLRNPVKI---EAASK 228
Query: 130 KDEVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
V Q +++ +D L+YIL+ E+ + ++IFT T D L L L G
Sbjct: 229 YSTVDTLKQQYRFVAAKYKDCYLVYILS----EMPESTSMIFTRTCDGTRFLALVLRSLG 284
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
++ ++ ++ Q+ RL L +F AG + L+ TD
Sbjct: 285 FRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS----------------------- 321
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D +V VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++
Sbjct: 322 ----------RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEW 371
Query: 309 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
+ +I+ +G + +P + L AE AK ++ + ++ES + R E
Sbjct: 372 YIQIEKLIGKK-------LPEYPAEEDEVLSLLERVAE--AKKLSAMNMKESGGRKRRGE 422
>gi|452986589|gb|EME86345.1| hypothetical protein MYCFIDRAFT_202484 [Pseudocercospora fijiensis
CIRAD86]
Length = 756
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 181/372 (48%), Gaps = 68/372 (18%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDIVIATPG S SF+ ++++ILVLDEAD +L G+ D+L + IP+
Sbjct: 356 PDIVIATPGRFIDLERN----SASFAVNTIEILVLDEADRMLEEGFADELNEILTKIPKS 411
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD L ++ + P L + D + + VQ+F E +L
Sbjct: 412 RQTMLFSATMTSKVDDLIRVGMQRPVRLMV----DAQKATVSGLVQEFVRLRQGREGKRL 467
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ L + ++ + +IF A R+++ G+K+A L+ + Q R++ +E F
Sbjct: 468 AYLMVLCE-QIYTDRVIIFFRQKKEAHRVRVIFALAGMKAAELHGNMTQEQRINAIETFR 526
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD L S RGID K + TVIN
Sbjct: 527 TGKASFLLATD----------------------------LAS-----RGIDIKGIETVIN 553
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFP 331
+E PQ+ Y+HR+GRT RA +G + +L + + K+ +K+ V + A
Sbjct: 554 YEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKV---VKAAVKAGK-------AQGA 603
Query: 332 LLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL----D 387
++ Q +VE A DV T++ ++ A+D+ + +L EK + + +DL +
Sbjct: 604 VIKQRSVE-----ASDVDAWQTRL---DAMAEDIED-VLREEKEERALQAVDRDLTKADN 654
Query: 388 LLKHDKDLSKKP 399
++K++ ++ +P
Sbjct: 655 IVKYEDEIKARP 666
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 250 QLLR-DRGLKQVIVFCNSKIGASRLARQLERDGVVASAIHGDKSQLERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 511
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 139/286 (48%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + L SFS L++LVLDEAD +L G+ D+K + A++P Q
Sbjct: 125 DILVATPGRLLDLYNQRAL---SFSQ-LEVLVLDEADRMLDMGFIHDIKKILAILPAKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S D+ +L K +++NP V+ V P+N VQQ+ + K
Sbjct: 181 NLMFSATFSDDIRQLAKGLVNNP----------VEISVTPRNATANTVQQWVCPVDQSQK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K Q + L+F+ T A RL LE I +A ++ Q +R L +F
Sbjct: 231 TAVLVKLIKQNDWQ-QVLVFSRTKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + V+
Sbjct: 290 KSGAVRVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA +G +VSLVS +E K+ +I+ +
Sbjct: 317 NFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSNEETKLLRDIELLI 362
>gi|357500169|ref|XP_003620373.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495388|gb|AES76591.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 502
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 147/316 (46%), Gaps = 46/316 (14%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS- 62
E ++ +K L + +A P I++ TPG + L +K FS +
Sbjct: 163 FEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLDHLKN----TKGFSLAR 218
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
LK LVLDEAD LL+ +E+ L + +IPR + L SAT + V+KL+++ L NP +
Sbjct: 219 LKYLVLDEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKI- 277
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
E V Q ++ +D L+YILT E+ +++FT T D L
Sbjct: 278 --ETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILT----EMAGSTSMVFTRTCDSTRLLA 331
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
L L G+K+ +N + Q RL L +F +G + L+ TD
Sbjct: 332 LILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVAS---------------- 375
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D V VIN+++P N+ Y+HR+GRT RA +G ++SLV
Sbjct: 376 -----------------RGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLV 418
Query: 302 SPDEMKIFEEIKSFVG 317
+ E++ + +I+ +G
Sbjct: 419 NQYELEWYVQIEKLIG 434
>gi|340518289|gb|EGR48530.1| predicted protein [Trichoderma reesei QM6a]
Length = 787
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 145/297 (48%), Gaps = 48/297 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SFS D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 373 PDVIIATPGRFIDHMRN----SASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 428
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD+L K+ L+ P + + D + + Q+F E ++
Sbjct: 429 RQTMLFSATMTSTVDRLIKVGLNKPVRVMV----DSQKKTAGTLTQEFVRLRPGREEKRM 484
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ + K L ++ +IF A R ++ G A L+ + Q R+ +E F
Sbjct: 485 GYLVHICK-NLYTERVIIFFRQKKDAHRARIIFGLLGFSCAELHGSMNQTQRIASVESFR 543
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +YL+ATD L S RG+D K V TVIN
Sbjct: 544 DGKVNYLLATD----------------------------LAS-----RGLDIKGVDTVIN 570
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
+E PQ+ YVHR+GRT RA G SV+L + + K+ +K+ V + + S II+
Sbjct: 571 YEAPQSVEIYVHRVGRTARAGRAGTSVTLAAEPDRKV---VKAAVKAGKAQGSKIIS 624
>gi|335041830|ref|ZP_08534857.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
gi|333788444|gb|EGL54326.1| superfamily II DNA and RNA helicase [Methylophaga
aminisulfidivorans MP]
Length = 433
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 139/283 (49%), Gaps = 43/283 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + ++ D L++LVLDEAD +L G+ D++ + ++P+ Q
Sbjct: 125 DVLVATPGRLLDLYQQNAIRF----DELEVLVLDEADRMLDMGFIHDIRKIINMLPQKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S+++ +L K ++ NP E+ K V+Q WI ++ + +L
Sbjct: 181 TLLFSATFSNEIRELAKRLVKNPV-----EISVAPANTTAKKVKQ-WIIPVDKKQKPALL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L + + L+F+ T A +L +LE G+K+A ++ Q +R L +F +
Sbjct: 235 NQLIQDNNWYQVLVFSKTKHGANKLTKYLEDHGLKAAAIHGNKSQGARTRALADFKSNTI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + VIN ++P
Sbjct: 295 QVLVATDI---------------------------------AARGLDIDQLPHVINVDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
AA YVHRIGRTGRA TG ++SLVS DE+ ++I+ +G+
Sbjct: 322 NVAADYVHRIGRTGRAGATGEAISLVSADEIDQLKDIEKLIGN 364
>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
Length = 478
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 144/289 (49%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L ++K FS +LK LV+DEAD LL + + L
Sbjct: 171 ALGKKPHIIVATPGRLVDHLE----KTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLK 226
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
IPR + L SAT SS V+ L++ L +P ++ V K + + +Q + R
Sbjct: 227 FIPRERRTYLFSATLSSKVESLQRASLRDPVRVS---VSSNKYQTVSTLLQNLLVIPQMR 283
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ L+ E K +IFT T+ R+ + L G + L+ +L Q++RL L
Sbjct: 284 -KDTYLIYLVN-EFTGKSTIIFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALN 341
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G D L+ATD RG+D V
Sbjct: 342 KFRSGTRDILVATDV---------------------------------AARGLDISKVDV 368
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+N+++PQ++ Y+HR+GRT RA +G ++SLV+ ++++F+ I++ +G
Sbjct: 369 VLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEVFQRIEAALG 417
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 141/289 (48%), Gaps = 43/289 (14%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
AL +V+ TPG + ++ G L+ + LK+LVLDEAD +L G+ DD++A+
Sbjct: 118 GALKRGVQVVVGTPGRLLDHINRGTLRLQH----LKMLVLDEADEMLDMGFIDDIEAIIK 173
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
P Q LL SAT ++ +L + L NP ++ + KDE+ +++Q + E+
Sbjct: 174 ETPETRQTLLFSATMPHEIQQLARKYLKNPRLVAVS-----KDELTVPSIEQVYYEVREK 228
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
KL + +L+ V A+IF T L LE G ++ L+ +L Q R ++
Sbjct: 229 TKLESLCRVLETIDV-TLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMR 287
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F G DYL+ATD RG+D +NV
Sbjct: 288 KFKNGQVDYLVATDVA---------------------------------ARGLDIENVSH 314
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++PQ+ YVHRIGRTGRA +G +++ + P+E + I+ +G
Sbjct: 315 VINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRLIEKIIG 363
>gi|336469774|gb|EGO57936.1| hypothetical protein NEUTE1DRAFT_81992 [Neurospora tetrasperma FGSC
2508]
Length = 830
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 146/299 (48%), Gaps = 46/299 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD+VIATPG + S SF+ D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 416 PDVVIATPGRFIDHMRN----SASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKS 471
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD+L + L+ P + + D + + VQ+F E +
Sbjct: 472 RQTMLFSATMTSSVDRLIRAGLNKPVRI----MADSQKKTAGTLVQEFVRLRPGRESKRE 527
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+L + K + ++ +IF +A ++++ FG+ A L+ + Q R+ +E+F
Sbjct: 528 GYLLHICKT-IYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFR 586
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G ++L+ATD L S RG+D K V TVIN
Sbjct: 587 DGKVNFLLATD----------------------------LAS-----RGLDIKGVDTVIN 613
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAP 329
+E PQ YVHR+GRT RA +G +++L + PD + +K+ S II P
Sbjct: 614 YEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDP 672
>gi|142982611|sp|P0C2N8.1|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
Length = 829
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 146/299 (48%), Gaps = 46/299 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD+VIATPG + S SF+ D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 415 PDVVIATPGRFIDHMRN----SASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKS 470
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD+L + L+ P + + D + + VQ+F E +
Sbjct: 471 RQTMLFSATMTSSVDRLIRAGLNKPVRI----MADSQKKTAGTLVQEFVRLRPGRESKRE 526
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+L + K + ++ +IF +A ++++ FG+ A L+ + Q R+ +E+F
Sbjct: 527 GYLLHICKT-IYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFR 585
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G ++L+ATD L S RG+D K V TVIN
Sbjct: 586 DGKVNFLLATD----------------------------LAS-----RGLDIKGVDTVIN 612
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAP 329
+E PQ YVHR+GRT RA +G +++L + PD + +K+ S II P
Sbjct: 613 YEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDP 671
>gi|375109850|ref|ZP_09756089.1| ATP-dependent RNA helicase [Alishewanella jeotgali KCTC 22429]
gi|374570019|gb|EHR41163.1| ATP-dependent RNA helicase [Alishewanella jeotgali KCTC 22429]
Length = 416
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 136/286 (47%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG + Q+ + L+ILVLDEAD +L G+ D+K + A++P Q
Sbjct: 129 DILIATPGRLLDLYQ----QNAVRFNQLEILVLDEADRMLDMGFIRDIKKILALLPPKRQ 184
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ L K +LH P +T V P N ++Q+ + K
Sbjct: 185 NLLFSATFSEEIRTLAKGLLHEPLEVT----------VTPPNSTVERIEQWLYPVDKGQK 234
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ +K Q + L+FT T A +L L LEK GI + ++ QN+R L EF
Sbjct: 235 ANLLIQQIKAHNWQ-QVLVFTKTKHGANKLTLLLEKAGISAMAIHGNKSQNARTKALAEF 293
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
AG L+ATD RG+D + + V+
Sbjct: 294 KAGGIRVLVATDIA---------------------------------ARGLDIQQLPQVV 320
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N+E+P A YVHRIGRTGRA G +VSLV +E+K + I+ +
Sbjct: 321 NYELPNVAEDYVHRIGRTGRAGAAGLAVSLVCAEELKELKGIEKLI 366
>gi|449481708|ref|XP_002195464.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Taeniopygia
guttata]
Length = 450
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P ++IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHVIIATPGRLVDHLEN----TKGFNLRALKFLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ QN RL L
Sbjct: 249 FKDSYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+ +G
Sbjct: 335 VINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIG 383
>gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana]
Length = 456
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 160/341 (46%), Gaps = 55/341 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P +++ATPG + +S +K FS SLK LVLDEAD LL+ +E L +
Sbjct: 135 ALGKRPHVIVATPGRLWDHMS----DTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
IPR + L SAT + V KL++ L NP + E V Q +++ +
Sbjct: 191 EIPRERKTFLFSATMTKKVRKLQRACLRNPVKI---EAASKYSTVDTLKQQYRFVAAKYK 247
Query: 149 D-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
D L+YIL+ E+ + ++IFT T D L L L G ++ ++ ++ Q+ RL L
Sbjct: 248 DCYLVYILS----EMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGAL 303
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG + L+ TD RG+D +V
Sbjct: 304 NKFKAGECNILVCTDVAS---------------------------------RGLDIPSVD 330
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNII 327
VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++ + +I+ +G +
Sbjct: 331 VVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKK-------L 383
Query: 328 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
+P + L AE AK ++ + ++ES + R E
Sbjct: 384 PEYPAEEDEVLSLLERVAE--AKKLSAMNMKESGGRKRRGE 422
>gi|320038882|gb|EFW20817.1| ATP-dependent RNA helicase DRS1 [Coccidioides posadasii str.
Silveira]
Length = 840
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 140/298 (46%), Gaps = 43/298 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
+ QL + L PD++IATPG + S SF+ D+L+ILVLDEA
Sbjct: 419 ITFCQLVGGFSLREQENVLKQRPDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEA 474
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D+L + IP+ Q +L SAT + VDKL ++ L+ P L + D K
Sbjct: 475 DRMLEDGFADELNEILNTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSKK 530
Query: 132 EVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
+ VQ+F + K + L LL + + ++F A R ++ G+K
Sbjct: 531 HTVGTLVQEFVRLRPGREGKRMGYLVLLCNTIYTNRVIVFFRQKKEAHRARIIFGLLGLK 590
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+A L+ + Q R++ +E F G +L+ATD
Sbjct: 591 AAELHGSMSQEQRINAVEAFRDGKVPFLLATD---------------------------- 622
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
L S RG+D K V +VIN+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 623 LAS-----RGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 675
>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 755
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 194/433 (44%), Gaps = 62/433 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
++ V + + A+ AAL P+IV+ATPG + V + SF + L L+LDEA
Sbjct: 249 IRAVLVVGGLSANVQAAALRTRPEIVVATPGR----VIDHVRNTHSFGLEDLATLILDEA 304
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D LL G+ +++K + P+ Q LL SAT ++ V+ L L + NP L+ +G
Sbjct: 305 DRLLEMGFLEEIKEIVRQCPKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPK 364
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
++ + ++ ++++ L + + K +IF+ T A RLK+ + IK+
Sbjct: 365 RLVEEVLKLKPNQSAQKEAFLMAIVSRSYD---KSTIIFSQTKQEAHRLKIIMGLSDIKA 421
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
L+ ++ Q RL L+EF G +LIATD
Sbjct: 422 GELHGDMTQTQRLAALDEFRTGTVTHLIATDV---------------------------- 453
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D +V VI+F+ P+ A Y+HR+GRT RA G +++ + + K+
Sbjct: 454 -----AARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKL--- 505
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
+K+ N + I+ N V + ED+ + + +I E + L+
Sbjct: 506 VKTIAKRGANLKARIV------PGNIVAEWHKKIEDMEEQIVQINYEERTERQLQ----- 554
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
KA E N K ++L+H ++ +P + + D K +A K ++ A +
Sbjct: 555 ----KAEMEAN-KASNILEHAAEIKSRPAKTWFQSERDKRNAQK--DALKAMETAEMDLM 607
Query: 432 NKNSSRRQGPRRK 444
++ S R+ RR+
Sbjct: 608 DRKSHRKGAKRRQ 620
>gi|74143864|dbj|BAE41247.1| unnamed protein product [Mus musculus]
Length = 323
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 144/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P+IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 6 ALAKKPNIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 61
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 62 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 116
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 117 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 175
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 176 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 202
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 203 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 251
>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
Length = 457
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 135/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DIVIATPG + L Q FS +L+ LVLDEAD +L G+ D+K L ++P+ Q
Sbjct: 126 DIVIATPG---RLLDIAGQQGIDFS-ALETLVLDEADRMLDMGFIHDIKKLMKMMPKERQ 181
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL +L NP ++ + D++ V F + S + +LL L
Sbjct: 182 TLLFSATFSLEIKKLASGLLKNPVLVEVARENTTADQI--SQVVHF-VDKSRKRELLSQL 238
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
K ++ L+FT T A RL LE+ GI +A ++ Q +R L F A
Sbjct: 239 IKTK---DWRQVLVFTRTKHGANRLTKQLEEAGISAAAIHGNKSQGARTKALASFKANEI 295
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+N+E+P
Sbjct: 296 RVLVATDI---------------------------------AARGIDIDQLPHVVNYELP 322
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA +G +VSLV DE K+ +I+ F+
Sbjct: 323 NVPEDYVHRIGRTGRAGQSGEAVSLVCVDEHKLLFDIEKFI 363
>gi|152999406|ref|YP_001365087.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|151364024|gb|ABS07024.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
Length = 525
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + ++ FS L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 136 DVLVATPGRLMDLYNQKAVK---FSQ-LEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q+ + K
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNP----------VEISVTPRNAAATTVKQWVCPVDKSQK 241
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K Q + L+F+ T A RL LE GIK+A ++ Q +R L +F
Sbjct: 242 SALLIQLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADF 300
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 301 KNGQARVLVATDI---------------------------------AARGLDIDQLPQVV 327
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ +
Sbjct: 328 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLI 373
>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 451
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 45/304 (14%)
Query: 14 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 73
+ V + P A L G +VI TPG + + G L + ++ VLDEAD
Sbjct: 99 RTVVIYGGAPMERQIAGLKGA-SMVIGTPGRVMDLMRRGYLNL----NGIRFFVLDEADR 153
Query: 74 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 133
+L G+ DD+K + P+ Q +L SAT ++ L + + NP + L E DE+
Sbjct: 154 MLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEIISLARRYMKNPEKIILSE-----DEI 208
Query: 134 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 193
+NV Q+++ E +K+ + +LL E + K LIF NT + L+K+G K+
Sbjct: 209 TAENVAQYYVEVGEINKIAKLSSLLISE--RGKYLIFCNTRRKTKNIAEILQKYGFKAFA 266
Query: 194 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 253
L+ ++ Q +R ++ F G D L++TD
Sbjct: 267 LHGDMRQATRTRTMDAFKQGKIDILVSTDVA----------------------------- 297
Query: 254 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RGID + V+N+++P YVHRIGRTGR G +++ V+ ++ + F I+
Sbjct: 298 ----ARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIE 353
Query: 314 SFVG 317
F+G
Sbjct: 354 DFIG 357
>gi|449547391|gb|EMD38359.1| hypothetical protein CERSUDRAFT_49063 [Ceriporiopsis subvermispora
B]
Length = 447
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 150/310 (48%), Gaps = 48/310 (15%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ ++ + MP D ALA P IV+ATPG + L +K FS LK LV+D
Sbjct: 108 IGVRCATIVGGMPIMDQAVALAKRPHIVVATPGRLNDHLE----NTKGFSLRGLKFLVMD 163
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL + + + VIP+ L SAT ++ V KL++ L NP + + E
Sbjct: 164 EADRLLDMDFGPIIDKILKVIPKERTTYLFSATMTTKVAKLQRASLSNPVRVEVSE---- 219
Query: 130 KDEVIPKNVQQF-WISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
K + +Q + +I ++D L+Y+ L Q +IFT T+ A RL + L
Sbjct: 220 KYSTVSTLLQYYLFIPLVQKDVHLIYLAN----SLAQNSIIIFTRTVHDAQRLSIILRTL 275
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 247
G + L+ +L Q++RL L +F +G L+ATD
Sbjct: 276 GFPAVPLHGQLSQSARLGALGKFKSGGRKVLVATDVAS---------------------- 313
Query: 248 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
RG+D +V VIN+++P ++ Y+HR+GRT RA +G SV+LV+ +++
Sbjct: 314 -----------RGLDIPSVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSVTLVTQYDVE 362
Query: 308 IFEEIKSFVG 317
+ + I++ +G
Sbjct: 363 LVQRIEATIG 372
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 229 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 284
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 285 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 339
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 340 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEI 398
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 399 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 425
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 426 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 466
>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
gi|121742543|sp|Q0CZN5.1|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
Length = 821
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 135/276 (48%), Gaps = 43/276 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 426 PDVIIATPGRFIDHMRN----SASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 481
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT + VDKL ++ L+ P L + D K VQ+F + DK L
Sbjct: 482 RQTMLFSATMTDTVDKLIRVGLNRPVRLMV----DSKKNTSLTLVQEFVRLRPGREDKRL 537
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L L E+ + ++F A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 538 GYLLYLCKEIYTGRVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFRD 597
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +L+ATD L S RG+D K V TVIN+
Sbjct: 598 GKVAFLLATD----------------------------LAS-----RGLDIKGVETVINY 624
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 625 EAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKV 660
>gi|255021847|ref|ZP_05293857.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
51756]
gi|340782596|ref|YP_004749203.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus SM-1]
gi|254968671|gb|EET26223.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus ATCC
51756]
gi|340556748|gb|AEK58502.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus caldus SM-1]
Length = 429
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 148/322 (45%), Gaps = 61/322 (18%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
I L +GQ+ ++ + L + L DIV+ATPG + L LQ +S D
Sbjct: 111 IRLYRGQMPVRSLMLIGGVKIGPQMEQLRNGADIVVATPG---RLLDH--LQQRSLRLDR 165
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
++ LVLDEAD +L G+ D++ + ++P Q LL SAT S ++ +L + +LH P +
Sbjct: 166 VETLVLDEADRMLDMGFIRDIRRIIGMLPAKRQNLLFSATFSPEIRQLAEGLLHQPIAV- 224
Query: 123 LPEVGDVKDEVIPKN-----VQQFWISCSE---RDKLLYILTLLKLELVQKKALIFTNTI 174
EV P N + Q I + RD LL+++ + V LIFT T
Sbjct: 225 ---------EVTPANATVDSITQRVIRVDQERKRDLLLHLMDAHQWHQV----LIFTRTK 271
Query: 175 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 234
A RL +E+ G + ++ Q +R L EF +G L+ATD
Sbjct: 272 HGADRLARQMEREGFSAMAIHGNKSQGARTRALAEFKSGSLRALVATDIA---------- 321
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
RGID + + V+NFE+PQ A YVHRIGRTGRA
Sbjct: 322 -----------------------ARGIDIQRLPRVVNFELPQVAEDYVHRIGRTGRAGED 358
Query: 295 GASVSLVSPDEMKIFEEIKSFV 316
G +VSLVS +E + ++ +
Sbjct: 359 GEAVSLVSGEERSQLQAVERLL 380
>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 710
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 194/433 (44%), Gaps = 62/433 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
++ V + + A+ AAL P+IV+ATPG + V + SF + L L+LDEA
Sbjct: 249 IRAVLVVGGLSANVQAAALRTRPEIVVATPGR----VIDHVRNTHSFGLEDLATLILDEA 304
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D LL G+ +++K + P+ Q LL SAT ++ V+ L L + NP L+ +G
Sbjct: 305 DRLLEMGFLEEIKEIVRQCPKKRQTLLFSATLTAGVEALASLSMKNPARLSADTLGTTPK 364
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
++ + ++ ++++ L + + K +IF+ T A RLK+ + IK+
Sbjct: 365 RLVEEVLKLKPNQSAQKEAFLMAIVSRSYD---KSTIIFSQTKQEAHRLKIIMGLSDIKA 421
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
L+ ++ Q RL L+EF G +LIATD
Sbjct: 422 GELHGDMTQTQRLAALDEFRTGTVTHLIATDV---------------------------- 453
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D +V VI+F+ P+ A Y+HR+GRT RA G +++ + + K+
Sbjct: 454 -----AARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESDRKL--- 505
Query: 312 IKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILN 371
+K+ N + I+ N V + ED+ + + +I E + L+
Sbjct: 506 VKTIAKRGANLKARIV------PGNIVAEWHKKIEDMEEQIVQINYEERTERQLQ----- 554
Query: 372 SEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMG 431
KA E N K ++L+H ++ +P + + D K +A K ++ A +
Sbjct: 555 ----KAEMEAN-KASNILEHAAEIKSRPAKTWFQSERDKRNAQK--DALKAMETAEMDLM 607
Query: 432 NKNSSRRQGPRRK 444
++ S R+ RR+
Sbjct: 608 DRKSHRKGAKRRQ 620
>gi|393763310|ref|ZP_10351931.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
gi|392605650|gb|EIW88540.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
Length = 416
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 136/286 (47%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG + Q+ + L+ILVLDEAD +L G+ D+K + A++P Q
Sbjct: 129 DILIATPGRLLDLYQ----QNAVRFNQLEILVLDEADRMLDMGFIRDIKKILALLPPKRQ 184
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ L K +LH P +T V P N ++Q+ + K
Sbjct: 185 NLLFSATFSEEIRTLAKGLLHEPLEVT----------VTPPNSTVERIEQWLYPVDKGQK 234
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ +K Q + L+FT T A +L L LEK GI + ++ QN+R L EF
Sbjct: 235 ANLLIQQIKAHNWQ-QVLVFTKTKHGANKLTLLLEKAGISAMAIHGNKSQNARTKALAEF 293
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
AG L+ATD RG+D + + V+
Sbjct: 294 KAGGIRVLVATDIA---------------------------------ARGLDIQQLPQVV 320
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N+E+P A YVHRIGRTGRA G +VSLV +E+K + I+ +
Sbjct: 321 NYELPNVAEDYVHRIGRTGRAGAAGLAVSLVCAEELKELKGIEKLI 366
>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 502
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 144/292 (49%), Gaps = 51/292 (17%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALS 87
AAL G +IVIATPG + +Q K+ + S +ILV+DEAD +L G+ DL+ +
Sbjct: 144 AALRGGVEIVIATPGRL-----LDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRII 198
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
++P+ Q L+ SAT S ++ KL L +P + + + +NV Q E
Sbjct: 199 NLLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEV-----ARSNATAENVTQIIYKVEE 253
Query: 148 ---RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
RD + +I+ L K+ ++F+NT A RL LE G+K++ ++ + Q+ R+
Sbjct: 254 EAKRDAVSFIIRERGL----KQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERM 309
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
LE+F G + L+ATD RG+D
Sbjct: 310 QALEQFKNGTIEVLVATDV---------------------------------AARGLDIA 336
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ VINF++P NA YVHRIGRTGRA +G ++SL S + ++ +I+ +
Sbjct: 337 ELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKDARLLVDIEKMI 388
>gi|281422527|ref|ZP_06253526.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
DSM 18205]
gi|281403351|gb|EFB34031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella copri
DSM 18205]
Length = 568
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 45/291 (15%)
Query: 26 DLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
+LR+ G D+VIATPG + +S G + S +LDEAD +L G+ +D+K
Sbjct: 119 ELRSLRMGA-DVVIATPGRLISHISLGNVDLSKVS----FFILDEADRMLDMGFSEDIKT 173
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC 145
+++ +P+ CQ ++ SAT +++L K +L NP + L + ++Q C
Sbjct: 174 IASKLPKTCQTIMFSATMPEKIEELAKTLLKNPVEIKLAVSKPA------EKIKQEAYVC 227
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
E K+ I + K + K+ ++F+ + +L L++ G+ ++++L Q R
Sbjct: 228 YETQKMTIIKDIFKAGDL-KRVIVFSGSKFKVKQLAASLQQIGVNCGAMHSDLEQAERDD 286
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
++ +F +G +D L+ATD V RGID +
Sbjct: 287 VMFKFKSGQYDVLVATDI---------------------------------VARGIDIDD 313
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ VIN+++P + YVHRIGRT RA G +++ VS ++ F++I+ F+
Sbjct: 314 IEMVINYDVPHDTEDYVHRIGRTARANRDGRAITFVSEEDQYWFQQIEKFL 364
>gi|160874026|ref|YP_001553342.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|160859548|gb|ABX48082.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
Length = 525
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + ++ FS L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 136 DVLVATPGRLMDLYNQKAVK---FSQ-LEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q+ + K
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNP----------VEISVTPRNAAATTVKQWVCPVDKSQK 241
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K Q + L+F+ T A RL LE GIK+A ++ Q +R L +F
Sbjct: 242 SALLIQLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADF 300
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 301 KNGQARVLVATDI---------------------------------AARGLDIDQLPQVV 327
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ +
Sbjct: 328 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLI 373
>gi|283769405|ref|ZP_06342304.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
gi|283104062|gb|EFC05446.1| putative ATP-dependent RNA helicase RhlE [Bulleidia extructa W1219]
Length = 425
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 145/306 (47%), Gaps = 43/306 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 70
+ L+ + PA+ A+ DI+IATPG + L+ G + + ++ LVLDE
Sbjct: 97 MHLRACCVYGGSPAAPQLKAIRSGCDILIATPGRLLDYLAHGKISLRH----IEFLVLDE 152
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
AD +L G+ D++ + IP L SAT ++ +L + IL NP EV
Sbjct: 153 ADRMLDMGFIADVRKIVQQIPNDRITALFSATMPKEIQELARDILKNP-----KEVRIEA 207
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
++ + Q+ I + K ++ LL E + KK ++FT T A RL+ +L++ I
Sbjct: 208 EKFTASTIDQYLIYTEKSSKKKVLVNLLNTESI-KKTIVFTRTKIGADRLEKYLKEKEIA 266
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+++ + Q RL+ L+ F LIATD
Sbjct: 267 CLVIHGDKTQGQRLNALQRFRTNQIRILIATD---------------------------- 298
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
RGID K++ VINF++P++ YVHRIGRTGRA G S+SLV +E+ +
Sbjct: 299 -----VAARGIDIKDISHVINFDLPEDIENYVHRIGRTGRAKQEGVSISLVCKEELNLLA 353
Query: 311 EIKSFV 316
I+S++
Sbjct: 354 NIESYI 359
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 476
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 149/317 (47%), Gaps = 43/317 (13%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS- 60
A E V L+V + + AL P IV+ATPG + L ++K FS
Sbjct: 139 ASFEALGSLVNLRVAVIVGGLDMVAQAIALGKKPHIVVATPGRLVDHLE----KTKGFSL 194
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
SLK LV+DEAD LL + + + IPR + L SAT SS ++ L++ L +P
Sbjct: 195 RSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTFLFSATMSSKIESLQRASLRDPVR 254
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
+++ + +N +I C K Y++ L+ E KK ++FT T+ RL
Sbjct: 255 ISISSSSHQTVSTLIQN----YIFCPHNKKDTYLVYLVN-EYSGKKIVLFTRTVTETQRL 309
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
+ L G + ++ +L Q +RL L +F AG D L+ATD
Sbjct: 310 AILLRTLGFGAIPIHGQLNQTARLGALNKFRAGSRDILVATDVA---------------- 353
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
RG+D V VINF++P ++ YVHR+GRT RA +G ++++
Sbjct: 354 -----------------ARGLDIPLVDVVINFDIPSDSKTYVHRVGRTARAGKSGKAITI 396
Query: 301 VSPDEMKIFEEIKSFVG 317
++ +++I+ I++ +G
Sbjct: 397 MTQYDLEIYLRIEAALG 413
>gi|350290558|gb|EGZ71772.1| DEAD-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 865
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 146/299 (48%), Gaps = 46/299 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD+VIATPG + S SF+ D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 416 PDVVIATPGRFIDHMRN----SASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKS 471
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD+L + L+ P + + D + + VQ+F E +
Sbjct: 472 RQTMLFSATMTSSVDRLIRAGLNKPVRI----MADSQKKTAGTLVQEFVRLRPGRESKRE 527
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+L + K + ++ +IF +A ++++ FG+ A L+ + Q R+ +E+F
Sbjct: 528 GYLLHICKT-IYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFR 586
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G ++L+ATD L S RG+D K V TVIN
Sbjct: 587 DGKVNFLLATD----------------------------LAS-----RGLDIKGVDTVIN 613
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAP 329
+E PQ YVHR+GRT RA +G +++L + PD + +K+ S II P
Sbjct: 614 YEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDP 672
>gi|88706512|ref|ZP_01104216.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
gi|88699224|gb|EAQ96339.1| ATP-dependent RNA helicase DbpA [Congregibacter litoralis KT71]
Length = 462
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/351 (27%), Positives = 157/351 (44%), Gaps = 52/351 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K+V L P +L IV+ TPG + L L+ D LK+LVLDEAD
Sbjct: 102 IKLVTLCGGKPFGPQVGSLEHGAHIVVGTPGRIQDHLGRDTLKL----DGLKVLVLDEAD 157
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+L G+ D ++A+ A PR Q LL SAT ++ K+ I P ++T+ E K+E
Sbjct: 158 RMLDMGFADSMEAIVAKTPRSRQTLLFSATYPENIRKMSASIQRQPSMVTVDEEVAHKEE 217
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
VI +Q + + ++ +L L + A++F NT + L + I++
Sbjct: 218 VI----EQLFYEVQKHERHTTLLALFE-HYTPANAVVFCNTKKQCDEVASVLRDYDIEAR 272
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
++ +L Q R +L +F L+ATD
Sbjct: 273 AIHGDLDQRERDQVLVQFANNSCPVLVATDVA---------------------------- 304
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RG+D K++ VIN+E+P++ YVHRIGRTGRA TG ++S+V P E +I
Sbjct: 305 -----ARGLDIKSLAMVINYELPRDPEVYVHRIGRTGRAGETGLAMSIVIPSETHRISKI 359
Query: 313 KSFVGD----------DENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVT 353
+ F D N + ++AP + +A + R D+ ++T
Sbjct: 360 EEFQSQPCACDTLPSLDRNPNYELMAPMVTIQLDAGRKQKLRPGDILGALT 410
>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 451
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 45/304 (14%)
Query: 14 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 73
+ V + P A L G +VI TPG + + G L + ++ VLDEAD
Sbjct: 99 RTVVIYGGAPMERQIAGLKGA-SMVIGTPGRVMDLMRRGYLNL----NGIRFFVLDEADR 153
Query: 74 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 133
+L G+ DD+K + P+ Q +L SAT ++ L + + NP + L E DE+
Sbjct: 154 MLDMGFIDDIKWILQKTPKDKQMMLFSATMPPEIISLARRYMKNPEKIILSE-----DEI 208
Query: 134 IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 193
+NV Q+++ E +K+ + +LL E + K LIF NT + L+K+G K+
Sbjct: 209 TAENVAQYYVEVGEINKIAKLSSLLISE--RGKYLIFCNTRRKTKNIAEILQKYGFKAFA 266
Query: 194 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDS 253
L+ ++ Q +R ++ F G D L++TD
Sbjct: 267 LHGDMRQATRTRTMDAFKQGKIDILVSTDVA----------------------------- 297
Query: 254 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RGID + V+N+++P YVHRIGRTGR G +++ V+ ++ + F I+
Sbjct: 298 ----ARGIDVHGITHVVNYDVPLYPKDYVHRIGRTGRMDAHGKAITFVTREDKEYFRRIE 353
Query: 314 SFVG 317
F+G
Sbjct: 354 DFIG 357
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + +++LVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSGEIKKLAATYLRNPQTIEV-----ARSNSTATNVTQVVYEVAEGDKTGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ G+ + ++ + Q+ R+ L+ F G
Sbjct: 250 QLIR-ERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEV 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 155/306 (50%), Gaps = 45/306 (14%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDE 70
QL+V + + + A L +++IATPG + +Q+K+ + ++ +VLDE
Sbjct: 119 QLRVTCVFGGIDMAPQTAELKRGVEVLIATPGRL-----LDHIQAKNCQLNQVEYVVLDE 173
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
AD +L G+ DL+ + + +P+ Q LL SAT S ++ KL + L +P ++ + +
Sbjct: 174 ADRMLDIGFLPDLQRILSYLPKTRQTLLFSATFSPEIKKLAQSYLQDPLLVEV-----AR 228
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
NV+Q + S ++ DK +L +L+ E +A++F N+ A RL E+ G++
Sbjct: 229 PNATATNVEQRFYSVTDDDKRRTVLHILR-ERSITQAIVFVNSKLGAARLARSFERDGLR 287
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
++ L+ + Q+ RL L+ F G D L+ATD
Sbjct: 288 TSALHGDKSQDERLKALDAFKRGEVDVLVATD---------------------------- 319
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
RG+D ++ V NF++P NA YVHRIGRTGRA +G +VSLVS D+ ++
Sbjct: 320 -----VAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLVS 374
Query: 311 EIKSFV 316
+I+ +
Sbjct: 375 DIEQLI 380
>gi|424780375|ref|ZP_18207249.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
gi|422843078|gb|EKU27524.1| Cold-shock DEAD-box protein A [Catellicoccus marimammalium
M35/04/3]
Length = 494
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 132/282 (46%), Gaps = 43/282 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P IV+ TPG + + G L+ + +K+LVLDEAD +L+ G+ DD++++ +P
Sbjct: 120 PQIVVGTPGRLLDHIQRGTLKL----NHVKVLVLDEADEMLNMGFLDDIESIIKSVPNDR 175
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q LL SAT D+ ++ + NP + + E+ + Q+++ E +K +
Sbjct: 176 QTLLFSATMPEDIKRIGVQFMKNPEHVQIK-----AKEMTASLIDQYFMRVKEFEKFDIL 230
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
LL + + ++IF T L LE G K+ ++ +L Q R+ +L+ F G
Sbjct: 231 TRLLDVH-TPELSIIFGRTKRRVDELSRALESRGYKAEGIHGDLSQQKRMDVLKAFKKGE 289
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
D L+ATD RG+D V V NF++
Sbjct: 290 LDILVATD---------------------------------VAARGLDISGVTHVYNFDI 316
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
PQ+ YVHRIGRTGRA G SV+ V+P+EM + I+
Sbjct: 317 PQDPESYVHRIGRTGRAGKDGMSVTFVTPNEMSYLQTIEKLT 358
>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 857
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 146/299 (48%), Gaps = 46/299 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD+VIATPG + S SF+ D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 415 PDVVIATPGRFIDHMRN----SASFAVDTIEILVLDEADRMLEDGFADELNEILTTLPKS 470
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD+L + L+ P + + D + + VQ+F E +
Sbjct: 471 RQTMLFSATMTSSVDRLIRAGLNKPVRI----MADSQKKTAGTLVQEFVRLRPGRESKRE 526
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+L + K + ++ +IF +A ++++ FG+ A L+ + Q R+ +E+F
Sbjct: 527 GYLLHICKT-IYTERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVEDFR 585
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G ++L+ATD L S RG+D K V TVIN
Sbjct: 586 DGKVNFLLATD----------------------------LAS-----RGLDIKGVDTVIN 612
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSNIIAP 329
+E PQ YVHR+GRT RA +G +++L + PD + +K+ S II P
Sbjct: 613 YEAPQTPEIYVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKSQGAKISSRIIDP 671
>gi|126175663|ref|YP_001051812.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|125998868|gb|ABN62943.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
Length = 526
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + ++ FS L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 136 DVLVATPGRLMDLYNQKAVK---FSQ-LEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 191
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q+ + K
Sbjct: 192 NLMFSATFSDEIRELAKGLVNNP----------VEISVTPRNAAATTVKQWVCPVDKSQK 241
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K Q + L+F+ T A RL LE GIK+A ++ Q +R L +F
Sbjct: 242 SALLIQLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADF 300
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 301 KNGQARVLVATDI---------------------------------AARGLDIDQLPQVV 327
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ +
Sbjct: 328 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLI 373
>gi|451947099|ref|YP_007467694.1| DNA/RNA helicase, superfamily II [Desulfocapsa sulfexigens DSM
10523]
gi|451906447|gb|AGF78041.1| DNA/RNA helicase, superfamily II [Desulfocapsa sulfexigens DSM
10523]
Length = 430
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 133/275 (48%), Gaps = 51/275 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + L + SF L++LVLDEAD +L G+ D++ + AV+PR Q
Sbjct: 125 DILVATPG---RLLDLHRQNAVSFKQ-LEVLVLDEADRMLDMGFIHDIRKILAVLPRTRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ----QFWISCSERDKL 151
L+ SAT S D+ L K ++ NP V+ V P N + WI+ ++ +
Sbjct: 181 TLMFSATFSIDIRSLAKTLVRNP----------VEISVTPPNSTVEAIEHWIAPVDKKQK 230
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+L L + ++ L+F+ T A RL +LE I +A ++ QN+R L +F
Sbjct: 231 PALLAHLITKQKWERVLVFSRTKHGANRLTGYLEGNKITAAAIHGNKSQNARTKALADFK 290
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G L+ATD RGID + V+N
Sbjct: 291 EGRIRILVATDIA---------------------------------ARGIDIDQLPQVVN 317
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
F++P A Y+HRIGRTGRA + G ++SLVS DEM
Sbjct: 318 FDLPNVAEDYIHRIGRTGRAGSAGQAISLVSADEM 352
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + +++LVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 161 EILIATPGR----LLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQ 216
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 217 TLLFSATFSGEIKKLAATYLRNPQTIEV-----ARSNSTATNVTQVVYEVAEGDKTGAVV 271
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ G+ + ++ + Q+ R+ L+ F G
Sbjct: 272 KLIR-ERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQSERMQALDAFKRGEV 330
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 331 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 357
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 358 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 398
>gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
gi|423210879|ref|ZP_17197432.1| hypothetical protein HMPREF1169_02950 [Aeromonas veronii AER397]
gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
B565]
gi|404614274|gb|EKB11275.1| hypothetical protein HMPREF1169_02950 [Aeromonas veronii AER397]
Length = 416
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 140/286 (48%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + L G L DSL+ LV DEAD +L G+ D++ AL +P Q
Sbjct: 129 DLLIATPGRLLDHLRQGALSL----DSLRHLVFDEADRMLDMGFMDEITALLKQLPVDRQ 184
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT ++ L K++L +P ++ EV P+N V+Q + K
Sbjct: 185 TLLFSATCDDNLFALSKVLLRDPELI----------EVAPRNTTAAEVEQRVYTVDSDRK 234
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
L + +LK++ ALIF+ T A +L L K GI + + +L Q++R +L EF
Sbjct: 235 LALVEHMLKVK-GWAPALIFSRTRQGADKLAQQLGKSGINALAFHGDLSQSAREKVLLEF 293
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
AG L+ATD RG+D +++ VI
Sbjct: 294 RAGTLQALVATDV---------------------------------AARGLDITDLNYVI 320
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 321 NLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDTPLLEKVEAVL 366
>gi|424778096|ref|ZP_18205049.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887089|gb|EKU29499.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 414
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 142/287 (49%), Gaps = 53/287 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+IVIATPG + + + S ILVLDEAD +L G+ DL + +++P+ Q
Sbjct: 96 EIVIATPGRLLDHIDQRTINLSQVS----ILVLDEADRMLDMGFLPDLDRIVSLLPKNRQ 151
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ KL + L++P V+ EV +N V Q S +K
Sbjct: 152 GLLFSATFSKEIRKLARNFLNDP----------VEIEVAARNATASTVTQVVYPMSADEK 201
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+ L+K + + + ++F+NT A +L +LE+ GIK+ ++ Q R+ +L+ F
Sbjct: 202 RRAVAHLIKTKKL-TQTIVFSNTKIGAGQLARYLEREGIKAESIHGNKSQLERMKVLDAF 260
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G D L+ATD RG+D + VI
Sbjct: 261 KSGSVDVLVATDVA---------------------------------ARGLDVAGMPCVI 287
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
N ++P NA YVHRIGRTGRA +G +++L++PDE + +EI+ +G
Sbjct: 288 NVDLPYNAEDYVHRIGRTGRAGASGEAIALMAPDEEHLLQEIEKLIG 334
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 216 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 271
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 272 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 326
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 327 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 385
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 386 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 412
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 413 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 453
>gi|90577494|ref|ZP_01233305.1| putative ATP-dependent RNA helicase RhlE [Photobacterium angustum
S14]
gi|90440580|gb|EAS65760.1| putative ATP-dependent RNA helicase RhlE [Photobacterium angustum
S14]
Length = 497
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + S ++ F D ++ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 125 DVLVATPGRLMDLHSQNAVK---FRD-VEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ +L K +++NP V+ +V P+N V+Q WI ++ K
Sbjct: 181 NLLFSATFSDEIRELAKGLVNNP----------VEIDVNPRNQTARTVKQ-WICPVDQKK 229
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+LT L E K+ L+FT T A +L LE G+ +A ++ Q +R L F
Sbjct: 230 KPNLLTKLLNERNWKQVLVFTKTKHGANKLATHLESRGVSAAAIHGNKSQGARTKALANF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + V+
Sbjct: 290 KSGDVRVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P A YVHRIGRTGRA G ++SLVS +E K I+
Sbjct: 317 NFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAAIERLT 362
>gi|378707268|ref|YP_005272162.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418024343|ref|ZP_12663326.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|315266257|gb|ADT93110.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353536303|gb|EHC05862.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 514
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + ++ FS L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 125 DVLVATPGRLMDLYNQKAVK---FSQ-LEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q+ + K
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNP----------VEISVTPRNAAATTVKQWVCPVDKSQK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K Q + L+F+ T A RL LE GIK+A ++ Q +R L +F
Sbjct: 231 SALLIQLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 290 KNGQARVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ +
Sbjct: 317 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLI 362
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 144/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ ++K LV+DEAD +L+ +E ++ +
Sbjct: 133 ALAKKPHIVIATPGRLIDHLEN----TKGFNLRAIKYLVMDEADRILNMDFETEVDKILK 188
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L +P + K + + K +QQF++ +
Sbjct: 189 VIPRDRKTFLFSATMTKKVHKLQRAALKDPVKCAVSS----KYQTVEK-LQQFYVFIPSK 243
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R+ L L G + L+ ++ QN RL L
Sbjct: 244 FKDSYLVYILN-ELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALN 302
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 303 KFKAKSRSILLATDVAS---------------------------------RGLDIPHVDV 329
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VINF++P ++ Y+HR+GRT RA +G +++ VS ++++F+ I+ +G
Sbjct: 330 VINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG 378
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 213 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 268
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 269 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKHSAVV 323
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 324 QLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 382
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 383 EALVATDV---------------------------------AARGLDIVELPAVINFDLP 409
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 410 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 450
>gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase [Methylovorus glucosetrophus SIP3-4]
gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
MP688]
gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus glucosetrophus
SIP3-4]
gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
Length = 459
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 135/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I++ATPG + + +Q +++L+LDEAD +L G+ DLK + A++P+ Q
Sbjct: 134 EILVATPGRLLDHVEQRTVQL----GQVQMLILDEADRMLDMGFMPDLKRILALLPKKRQ 189
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT S+D+ KL + L NP ++ + D+V K Q ++D L
Sbjct: 190 NLMFSATFSNDIKKLSEEFLTNPKLIEVARSNAASDKVTQKVYQL------DKDSKDSFL 243
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L LE ++ ++FT T A RL L + GI + ++ + Q R+ LE F G
Sbjct: 244 AKLLLESNSEQTIVFTKTKLTASRLARQLVREGIAADAIHGDKSQQERMQALEAFKQGKV 303
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + VINFE+P
Sbjct: 304 TTLVATD---------------------------------VAARGLDIDQLPMVINFELP 330
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA +G ++SLV P+E K +EI+ +
Sbjct: 331 SAPEDYVHRIGRTGRAGASGTAISLVCPEEEKYLKEIEKLI 371
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 162 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 217
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 218 TLLFSATFSGEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 272
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 273 QLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 331
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 332 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 358
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+A YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 359 FSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 399
>gi|373950799|ref|ZP_09610760.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323368|ref|YP_006019485.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817513|gb|AEG10179.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887399|gb|EHQ16291.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 515
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + ++ FS L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 125 DVLVATPGRLMDLYNQKAVK---FSQ-LEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q+ + K
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNP----------VEISVTPRNAAATTVKQWVCPVDKSQK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K Q + L+F+ T A RL LE GIK+A ++ Q +R L +F
Sbjct: 231 SALLIQLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 290 KNGQARVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ +
Sbjct: 317 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLI 362
>gi|386342411|ref|YP_006038777.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|334864812|gb|AEH15283.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 515
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + ++ FS L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 125 DVLVATPGRLMDLYNQKAVK---FSQ-LEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q+ + K
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNP----------VEISVTPRNAAATTVKQWVCPVDKSQK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K Q + L+F+ T A RL LE GIK+A ++ Q +R L +F
Sbjct: 231 SALLIQLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 290 KNGQARVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ +
Sbjct: 317 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLI 362
>gi|301610482|ref|XP_002934775.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Xenopus (Silurana) tropicalis]
Length = 448
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 144/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P +VIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 133 ALAKKPHVVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 188
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L +P + K + + K +QQF++ +
Sbjct: 189 VIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQTVEK-LQQFYVFIPSK 243
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R+ L L G + L+ ++ QN RL L
Sbjct: 244 FKDSYLVYILN-ELAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMSQNKRLGSLN 302
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 303 KFKAKSRSILLATDVAS---------------------------------RGLDIPHVDV 329
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VINF++P ++ Y+HR+GRT RA +G +++ VS ++++F+ I+ +G
Sbjct: 330 VINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIEHLIG 378
>gi|354593920|ref|ZP_09011963.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
gi|353673031|gb|EHD14727.1| ATP-dependent RNA helicase [Commensalibacter intestini A911]
Length = 476
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 141/305 (46%), Gaps = 53/305 (17%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG + G + + +KILV+DEAD +L G+ D++ + + +P+ Q
Sbjct: 156 DIIIATPGRLMDLFDKGAI----LLNQIKILVIDEADRMLDMGFIPDVERIISFLPKTRQ 211
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL+SAT S ++ KL L NP +T+ V ++ I E+ K +
Sbjct: 212 TLLLSATMSPEIKKLTDSFLSNPTEITVAPPSSVA-----TTIESGLIIVPEKRKRATLR 266
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ E V K A+IF N L L + G +S+ L+ +L Q R +EEF G
Sbjct: 267 QLLRNEGV-KNAIIFCNRKKDVDILTRSLNRHGFQSSALHGDLTQQHRTKTMEEFKNGEI 325
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+L+ +D RGID ++ V NF++P
Sbjct: 326 QFLVCSDI---------------------------------AARGIDVDHLSHVFNFDLP 352
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQ 335
+ A YVHRIGRTGRA TG + SL + D+ + E I++ + P PLL+
Sbjct: 353 RQAEDYVHRIGRTGRAGRTGFAYSLATEDDKETIEAIEALIQ----------KPIPLLSL 402
Query: 336 NAVES 340
N E+
Sbjct: 403 NKHEA 407
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 161 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 216
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 217 TLLFSATFSGEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 271
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 272 QLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 330
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 331 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 357
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+A YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 358 FSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 398
>gi|387927977|ref|ZP_10130655.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
gi|387587563|gb|EIJ79885.1| DEAD/DEAH box helicase domain protein [Bacillus methanolicus PB1]
Length = 485
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 142/285 (49%), Gaps = 46/285 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ ++ D++K+ VLDEAD +L+ G+ DD++A+ A
Sbjct: 116 ALKKRPHIIVGTPGRILDHINRKTIRL----DNVKMAVLDEADEMLNMGFIDDIEAILAQ 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IP Q LL SAT + + ++ + + NP I+ + K+ +P+ ++QF++ E++
Sbjct: 172 IPEEHQTLLFSATMPAPIQRMAEKFMKNPQIVRV----QSKEMTVPQ-IEQFYLEVQEKN 226
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + LL ++ + A++F T L L G + ++ +L Q RL +L +
Sbjct: 227 KFDVLTRLLDIQ-SPELAIVFGRTKRRVDELSEALNLRGYMAEGIHGDLSQAKRLSVLRK 285
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F G D L+ATD RG+D V V
Sbjct: 286 FKEGSIDVLVATD---------------------------------VAARGLDISGVTHV 312
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE---MKIFEE 311
NF++PQ+ YVHRIGRTGRA TG +++ V+P E +KI E+
Sbjct: 313 YNFDIPQDPESYVHRIGRTGRAGKTGMAMTFVTPREKAYLKIVEK 357
>gi|255711296|ref|XP_002551931.1| KLTH0B03278p [Lachancea thermotolerans]
gi|238933309|emb|CAR21493.1| KLTH0B03278p [Lachancea thermotolerans CBS 6340]
Length = 739
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 182/384 (47%), Gaps = 86/384 (22%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDIVIATPG L + S SF+ DS++ILV+DEAD +L G++D+L + ++IP
Sbjct: 346 PDIVIATPGR----LIDHIRNSASFNVDSVEILVIDEADRMLEEGFQDELNEIMSLIPSK 401
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKL-- 151
Q LL SAT +S +++L L L P + + D + K Q+F + +RD+L
Sbjct: 402 RQTLLFSATMNSKINQLISLSLKKPVKIMI----DPPRQAAAKLTQEF-VRVRKRDELKP 456
Query: 152 -LYILTLLKL-ELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
L + KL +L QK+ ++F ++A +L++ L G+K A L+ L Q RL +
Sbjct: 457 ALLFHLIRKLDDLSQKRVVVFVARKEVAHKLRIILGLLGMKVAELHGSLSQEQRLQAVNG 516
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F + LI TD L S RG+D + V
Sbjct: 517 FKSLQVPVLICTD----------------------------LAS-----RGLDIPKIEFV 543
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAP 329
IN++MP+ Y+HR+GRT RA G S+ SFVG + ++D N++
Sbjct: 544 INYDMPKTYDIYLHRVGRTARAGREGRSI---------------SFVG-ESSQDRNVV-- 585
Query: 330 FPLLAQNAVESLRY---------RAEDVAKSVTKIAVRESRAQDLRNEILNSEK-----L 375
+NA++S R D AK V +I + D+ EIL EK L
Sbjct: 586 -----KNAIKSAEENKKQDTVVGRMVDWAK-VEEINKLTTNKDDVIAEILEEEKQEKEIL 639
Query: 376 KAHFEVNPKDLDLLKHDKDLSKKP 399
+A EV K ++LKH ++S +P
Sbjct: 640 RAEMEVR-KGENMLKHKDEISARP 662
>gi|302823844|ref|XP_002993570.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
gi|300138582|gb|EFJ05345.1| hypothetical protein SELMODRAFT_270055 [Selaginella moellendorffii]
Length = 434
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 44/315 (13%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
E Q+ ++ V + + D AL P IV+ATPG + L+ +K FS +
Sbjct: 96 FEALGSQIGVRSVAIVGGVSMVDQAVALGKNPHIVVATPGRLLDHLT----NTKGFSLRN 151
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
+K LVLDEAD +L +E ++ + V+PR + L SAT ++ V KL++ L NP T
Sbjct: 152 VKYLVLDEADKILHNDFEKEVDEILKVVPRERKTFLFSATMTNKVAKLQRACLRNP---T 208
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
EV + ++Q ++ + K Y + LL E+ A++FT T D RL L
Sbjct: 209 KVEVSSKYTTAL--TLKQEYVFVPAKHKDCYFVFLLN-EMAGSTAMVFTRTCDSTRRLAL 265
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242
L G + ++ ++ Q+ R L +F AG + LI TD
Sbjct: 266 ILRSLGFGAIPISGQMSQSKRSGALLKFKAGDRNLLICTDVAS----------------- 308
Query: 243 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 302
RG+D +V VIN+++P N+ Y+HR+GRT RA +G ++S+V+
Sbjct: 309 ----------------RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGRAISIVT 352
Query: 303 PDEMKIFEEIKSFVG 317
++ +++ I+ +G
Sbjct: 353 QYDVDLYKRIEDLIG 367
>gi|394988591|ref|ZP_10381426.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
gi|393791970|dbj|GAB71065.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
Length = 476
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 43/288 (14%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
AAL G +I++ATPG L V Q ++ILVLDEAD +L G+ D+K + A
Sbjct: 122 AALKGGVEILVATPGR----LLDHVEQKTVNLSKVEILVLDEADRMLDMGFLPDIKRIIA 177
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
++P Q LL SAT + ++ KL +L +P ++ + + +NV Q
Sbjct: 178 LLPAKRQNLLFSATFAGEIKKLSDQLLTDPVLIEV-----ARRNAASENVTQVIYPVDHE 232
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K + L+K E +Q + L+F+ T A RL LEK GI + ++ + Q R L
Sbjct: 233 RKRELLAHLIKSENLQ-QVLVFSRTKHGASRLAQQLEKDGISATAIHGDKSQQQRTQALA 291
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
EF G L+ATD RG+D +
Sbjct: 292 EFKDGTVRVLVATDV---------------------------------AARGLDIDQLPH 318
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V+NF++P YVHRIGRTGRA ++G ++SLV DE+++ EI+S +
Sbjct: 319 VVNFDLPNAPEDYVHRIGRTGRAGSSGEAISLVCADELRMLAEIESML 366
>gi|217972086|ref|YP_002356837.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217497221|gb|ACK45414.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 515
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 142/286 (49%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + ++ FS L+ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 125 DVLVATPGRLMDLYNQKAVK---FSQ-LEILVLDEADRMLDMGFIRDIRKILAILPKQRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
L+ SAT S ++ +L K +++NP V+ V P+N V+Q+ + K
Sbjct: 181 NLMFSATFSDEIRELAKGLVNNP----------VEISVTPRNAAATTVKQWVCPVDKSQK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K Q + L+F+ T A RL LE GIK+A ++ Q +R L +F
Sbjct: 231 SALLIQLIKQNDWQ-QVLVFSRTKHGANRLAKSLEDAGIKAAAIHGNKSQTARTKALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + V+
Sbjct: 290 KNGQARVLVATDI---------------------------------AARGLDIDQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P YVHRIGRTGRA +G +VSLVS +E+K+ +I+ +
Sbjct: 317 NFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIERLI 362
>gi|449297073|gb|EMC93092.1| hypothetical protein BAUCODRAFT_77654 [Baudoinia compniacensis UAMH
10762]
Length = 496
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IV+ATPG + L +K FS SLK L++DEAD LL + L +
Sbjct: 172 ALAKKPHIVVATPGRLLDHLEN----TKGFSLRSLKYLIMDEADRLLDLDFGPILDKILQ 227
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT ++ +D L + L NP +++ N+ Q +I +
Sbjct: 228 VLPRERRTALFSATMNTKLDNLTRAALRNPVRVSI----STSSYQTVANLLQQYIFIPHK 283
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ LL E + ++FT T+ RL L + L+ +LPQ++RL L
Sbjct: 284 HKDVYLIHLLT-EFSGQTCILFTRTVTETQRLAFLLRALNFSAIPLHGQLPQSARLGALN 342
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G L+ATD RG+D +V
Sbjct: 343 KFRSGSRSILVATDVA---------------------------------ARGLDIPSVDL 369
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VINF++P ++ YVHR+GRT RA +G +VS+V+ ++++F+ I+ +G
Sbjct: 370 VINFDLPPDSKTYVHRVGRTARAGKSGVAVSVVTQYDVEVFQRIEKALG 418
>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 753
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 166/379 (43%), Gaps = 75/379 (19%)
Query: 30 ALAGPPDIVIATPGCM----PKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKA 85
AL PDIV+ATPG M LS G+ + L ILVLDEAD LL G+ ++
Sbjct: 245 ALRARPDIVVATPGRMLDHLQNSLSVGL-------EDLSILVLDEADRLLELGFTQEVHE 297
Query: 86 LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEVG---DVKDEVIPKNVQQF 141
L P+ Q +L SAT + +V L L L++P L+ P + +EV+
Sbjct: 298 LVRQCPKRRQTMLFSATMTEEVSNLINLSLNSPVRLSADPSTKRPVSLSEEVVKIR---- 353
Query: 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQN 201
E DK +L L ++K +IF+ A RLK+ G+K+A L+ L Q
Sbjct: 354 --PALENDKEAVLLALC-TRTFKEKVIIFSGMKVEAHRLKILFGLAGLKAAELHGNLTQA 410
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
RL LE F D+LIATD RG+
Sbjct: 411 MRLDALESFRKQEVDFLIATDV---------------------------------AARGL 437
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD-E 320
D V TVINF P + YVHR+GRT RA G +V+ V+ E + + I G +
Sbjct: 438 DIVGVETVINFHCPSDITVYVHRVGRTARAGRKGCAVTFVTERERSLLKAIAKKAGSQLQ 497
Query: 321 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFE 380
N +AP ++ + R + E++ V ++ E + LR KA E
Sbjct: 498 NRQ---VAP------TSIYNWRSKIEEMEDGVREVMQAERYEKALR---------KAEME 539
Query: 381 VNPKDLDLLKHDKDLSKKP 399
VN K +++ H+K++ +P
Sbjct: 540 VN-KAQNMMDHEKEIFSRP 557
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|392595723|gb|EIW85046.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 465
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 150/292 (51%), Gaps = 32/292 (10%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
ALA P I++ATPG + L +K FS SLK LVLDEAD LL + D+ +
Sbjct: 128 VALAKRPHIIVATPGRLNDHLQN----TKGFSLRSLKFLVLDEADRLLDMDFGPDIDQIL 183
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCS 146
VIP+ L SAT ++ V KL++ L NP + + K + + +Q + +I +
Sbjct: 184 KVIPKERTTYLFSATMTTKVAKLQRASLSNPVRVEVSS----KYQTVSTLLQYYLFIPLA 239
Query: 147 ERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
++D L+Y++ L ++FT T+ A RL + L G + L+ +L Q+ RL
Sbjct: 240 QKDVHLVYLVN----SLASNSIILFTRTVHDAQRLSIVLRTLGFPAVPLHGQLSQSQRLG 295
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
L +F +G + L+ATD ++ S G D RG+D +
Sbjct: 296 ALGKFKSGGRNILVATD-VASRHVLHSGFMGPTDHH----------------YRGLDLPS 338
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V VINF++P ++ Y+HR+GRT RA +G SV++V+ ++++ + I++ +
Sbjct: 339 VDVVINFDIPSHSKDYIHRVGRTARAGRSGKSVTIVTQYDVELIQRIETVIA 390
>gi|323495782|ref|ZP_08100852.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
gi|323319249|gb|EGA72190.1| DNA and RNA helicase [Vibrio sinaloensis DSM 21326]
Length = 399
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 141/291 (48%), Gaps = 45/291 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+ AL DI+IATPG + + + + ++ILV+DEAD +L G+ DD+ +
Sbjct: 117 KQALIDGVDILIATPGRLLDLYG----KRAVYFEEVEILVMDEADRMLDMGFIDDINKIL 172
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P Q LL SAT S+ V L K +H+P+ E+ ++ KN++Q W+ +
Sbjct: 173 DRLPTDIQHLLFSATLSNKVRDLAKTAVHDPF-----EISIAANQASKKNIEQ-WLITVD 226
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+DK +L+ L E +ALIF T A +L LEK GI + ++ Q R +L
Sbjct: 227 KDKKSALLSHLIKENDWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAIRKQLL 286
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 266
+F AG Y+IAT GV RGID + +
Sbjct: 287 ADFKAGKIQYMIAT----------------------------------GVGARGIDIEGL 312
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 313 SRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIESRLG 363
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|393775871|ref|ZP_10364176.1| atp-dependent rna helicase [Ralstonia sp. PBA]
gi|392717127|gb|EIZ04696.1| atp-dependent rna helicase [Ralstonia sp. PBA]
Length = 507
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 135/284 (47%), Gaps = 45/284 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I++ATPG L V Q +++LVLDEAD +L G+ DL+ + ++P Q
Sbjct: 137 EILVATPGR----LLDHVQQKTVNLSQVQMLVLDEADRMLDMGFLPDLQRILNLLPAQRQ 192
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S D+ KL L +P + + + NV Q E K ++
Sbjct: 193 TLLFSATFSGDIKKLAASYLRDPVTIEV-----ARSNSASSNVTQQVFMVPEARKQAAVV 247
Query: 156 TLLKLELVQ---KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
LLK Q K+ ++FTN+ RL LE+ GI ++ ++ + Q+ R+ LE F
Sbjct: 248 HLLKQRAEQGLPKQCIVFTNSKLGCSRLARQLEREGINASAIHGDKTQSERMQTLEGFKQ 307
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G D L+ATD RG+D ++ VINF
Sbjct: 308 GTIDALVATDV---------------------------------AARGLDIADMPCVINF 334
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
++P NA YVHRIGRTGRA TG ++SL +P + ++ +I+ +
Sbjct: 335 DLPYNAEDYVHRIGRTGRAGATGDAMSLCAPGDERLLADIEKLL 378
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSGEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 250 QLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+A YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 336 FSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|168009544|ref|XP_001757465.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691159|gb|EDQ77522.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 452
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 156/321 (48%), Gaps = 54/321 (16%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ LK L + ALA P +V+ TPG + L+ +K FS ++K LVLD
Sbjct: 114 IGLKCAVLVGGIDMMAQSVALAKRPHVVVGTPGRLVDHLTN----TKGFSLRTIKYLVLD 169
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL+ +E ++ + VIP+ + L SAT ++ V KL++ L NP V
Sbjct: 170 EADRLLNMDFEQEIDEILKVIPKERRTYLFSATMTTKVAKLQRACLKNP----------V 219
Query: 130 KDEVIPK-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
K EV K +++Q ++ + K Y++ +L EL A++FT T + +L L L
Sbjct: 220 KVEVSAKYSTVDSLKQEYLFIPAKYKDCYLVYILN-ELAGNTAMVFTRTCEATRKLSLVL 278
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244
G + ++ ++ Q RL L +F AG + LI TD
Sbjct: 279 RNLGFVAIPISGQMSQPKRLGALAKFKAGDCNILICTDVAS------------------- 319
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
RG+D +V+ VIN+++P N+ Y+HR+GRT RA +G ++S+V
Sbjct: 320 --------------RGLDIPSVNLVINYDIPTNSKDYIHRVGRTARAGRSGRAISMVCQY 365
Query: 305 EMKIFEEIKSFVGDDENEDSN 325
+++++++I+ +G E S+
Sbjct: 366 DVELYQKIEELIGKKLPEFSH 386
>gi|60649461|gb|AAH91696.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
Length = 323
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 6 ALAKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 61
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 62 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 116
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 117 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 175
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 176 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 202
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 203 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 251
>gi|407927370|gb|EKG20264.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 363
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 163/334 (48%), Gaps = 44/334 (13%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ +K L M + + AL P I++ATPG + L +K FS LK LV+D
Sbjct: 33 IGVKCAVLVGGMDMTPQQIALGKNPHIIVATPGRLLDHLEN----TKGFSLKQLKYLVMD 88
Query: 70 EADLLLSYGYEDDLKALSAVIPR-GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 128
EAD LL + + + V+P+ G + L SAT SS V+ L++ L NP ++ +
Sbjct: 89 EADRLLDLDFGPIIDKILKVLPKEGRRTYLFSATMSSKVESLQRASLSNPLRVS---ISS 145
Query: 129 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
+ + +Q F + + K LY++ LL +++ +IFT T++ R+ + L G
Sbjct: 146 SSHQTVSTLIQHF-LFVPHKHKDLYLIHLLN-DMIGHPTIIFTRTVNETQRIAILLRALG 203
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
+ L+ +L Q++RL L +F A D L+ATD
Sbjct: 204 FGAIPLHGQLSQSARLGALGKFKAKTRDILVATDVA------------------------ 239
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D +V VIN+++P ++ YVHR+GRT RA +G +VS+V+ +++I
Sbjct: 240 ---------ARGLDIPSVSYVINYDLPPDSKTYVHRVGRTARAGKSGKAVSIVTQYDVEI 290
Query: 309 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLR 342
+ I++ +G +E+ + +LA+ E+ R
Sbjct: 291 WLRIETALGKKVDEEPVVKEEVMVLAERVGEAQR 324
>gi|397169056|ref|ZP_10492491.1| ATP-dependent RNA helicase [Alishewanella aestuarii B11]
gi|396089136|gb|EJI86711.1| ATP-dependent RNA helicase [Alishewanella aestuarii B11]
Length = 418
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 136/286 (47%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG + Q+ + L+ILVLDEAD +L G+ D+K + A++P Q
Sbjct: 129 DILIATPGRLLDLYQ----QNAVRFNQLEILVLDEADRMLDMGFIRDIKKILALLPPKRQ 184
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ L K +LH P +T V P N ++Q+ + K
Sbjct: 185 NLLFSATFSDEIRTLAKGLLHEPLEVT----------VTPPNSTVERIEQWLYPVDKGQK 234
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ +K Q + L+FT T A +L L LEK GI + ++ QN+R L EF
Sbjct: 235 ANLLIQQIKQHNWQ-QVLVFTKTKHGANKLTLLLEKAGISAMAIHGNKSQNARTKALAEF 293
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
AG L+ATD RG+D + + V+
Sbjct: 294 KAGGIRVLVATDIA---------------------------------ARGLDIQQLPQVV 320
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N+E+P A YVHRIGRTGRA G +VSLV +E+K + I+ +
Sbjct: 321 NYELPNVAEDYVHRIGRTGRAGAAGLAVSLVCAEELKELKGIEKLI 366
>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 452
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 143/293 (48%), Gaps = 53/293 (18%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
A L G DI++ATPG + L ++ +F D+L +LVLDEAD +L G+ D++ +
Sbjct: 118 AKLRGGVDILVATPG---RLLDLHGQKAVNF-DALDVLVLDEADRMLDMGFIHDIRRILK 173
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWI 143
+P Q LL SAT S ++ +L K ++++P V+ V P+N V Q WI
Sbjct: 174 TLPSKRQNLLFSATFSQEIRQLAKGLVNDP----------VEISVTPRNTTAETVTQ-WI 222
Query: 144 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
++ + +LT L E ++ L+F T A RL LE+ GI++A ++ QN+R
Sbjct: 223 HPVDKARKPALLTHLIHEHQWQQVLVFMRTKHGANRLSRHLEEAGIEAAAIHGNKSQNAR 282
Query: 204 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 263
L+ F +G L+ATD RG+D
Sbjct: 283 TKALDGFKSGEIRVLVATDI---------------------------------AARGLDI 309
Query: 264 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ V+NFE+P A YVHRIGRTGRA +G ++SLV +E K I+ +
Sbjct: 310 NQLPQVVNFELPNVAEDYVHRIGRTGRAGASGHAISLVCAEEGKELAGIERLI 362
>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 463
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/286 (30%), Positives = 139/286 (48%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG M + Q D L++LVLDEAD +L G+ D+K + A++P+ Q
Sbjct: 129 DILIATPGRMMDLYN----QKAVRFDKLEVLVLDEADRMLDMGFIHDIKKILAILPKKRQ 184
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ +L K +++NP ++ V P+N V+Q W+ ++ +
Sbjct: 185 NLLFSATFSPEIRQLAKGLVNNP----------IEISVTPRNATAVSVEQ-WLHPVDKKR 233
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+L L + +AL+F+ T A ++ LE GI+++ ++ Q +R L +F
Sbjct: 234 KTELLIQLIADGRWDQALVFSRTKHGANKITKQLEDAGIRASAIHGNKSQGARTRALADF 293
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RG+D + + V+
Sbjct: 294 KEGRIRILVATDI---------------------------------AARGLDIEQLPHVV 320
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P A YVHRIGRTGRA TG ++SLV+ DE+ I+
Sbjct: 321 NFDLPDVAEDYVHRIGRTGRAGATGKAISLVAADELDQLRAIERLT 366
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSGEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 250 QLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+A YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 336 FSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 376
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+++IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 161 EVLIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 216
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 217 TLLFSATFSGEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 271
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 272 QLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 330
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 331 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 357
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+A YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 358 FSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 398
>gi|242003922|ref|XP_002422909.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212505802|gb|EEB10171.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 458
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 151/314 (48%), Gaps = 54/314 (17%)
Query: 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVL 68
++ +K + M LA P ++IATPG + L +K F+ +LK LV+
Sbjct: 116 KIGVKTAVIVGGMDMMSQALLLAKKPHVIIATPGRLVDHLEN----TKGFNLKALKFLVM 171
Query: 69 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 128
DEAD +L+ +E ++ + VIPR + LL SAT + V KL++ LH+P
Sbjct: 172 DEADRILNMDFEVEVDKILKVIPRERRTLLFSATMTQKVQKLQRASLHDP---------- 221
Query: 129 VKDEVIPK-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
VK EV K +QQ+++ + K +Y+++++ E+ +IF T R L
Sbjct: 222 VKVEVSSKYQTVDKLQQYYLFIPVKFKDVYLVSIIN-EMAGNTFMIFCGTCHNTLRTALL 280
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKS 243
L + G + L+ ++ QN RL L +F A LI+TD
Sbjct: 281 LRQLGFTAIPLHGQMSQNKRLGALTKFRAKNRSILISTDVAS------------------ 322
Query: 244 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
RG+D +V VINF++P ++ Y+HR+GRT RA +G +++ V+
Sbjct: 323 ---------------RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQ 367
Query: 304 DEMKIFEEIKSFVG 317
++++++ I+ +G
Sbjct: 368 YDVELYQRIEQLIG 381
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
Length = 451
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 151/312 (48%), Gaps = 54/312 (17%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ LK V + M ALA P I+I TPG + L +K F+ LK LVLD
Sbjct: 107 IALKSVVILGGMDPLAQAKALAQKPHIIIGTPGKILYHLEN----TKGFNLKQLKFLVLD 162
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL+ +E ++ A+ +IP+ L SAT ++ V KL++ L +P V
Sbjct: 163 EADKLLNMDFEREINAILDIIPKERNTYLFSATMTNKVSKLQRASLKDP----------V 212
Query: 130 KDEVIPK-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
K EV K +QQ ++ ++ K Y++ LL EL +++F T MA ++ L L
Sbjct: 213 KIEVSSKYQTVSTLQQNYLFVPDKYKETYLVYLLN-ELAGLTSIVFVATCQMAIKITLLL 271
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244
G ++ ++ ++ Q RL +F + + LIATD
Sbjct: 272 RNLGFQAIAIHGQMSQAKRLSSFNKFKSKESNLLIATDVAS------------------- 312
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
RG+D V V+NF++PQNA YVHR+GRT RA +G ++SLV+
Sbjct: 313 --------------RGLDIPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVTQY 358
Query: 305 EMKIFEEIKSFV 316
+++++++I+ +
Sbjct: 359 DVEMYQKIEQLI 370
>gi|411010727|ref|ZP_11387056.1| ATP-dependent RNA helicase RhlE [Aeromonas aquariorum AAK1]
Length = 415
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 53/292 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL D++IATPG + L G L + L+ LV DEAD +L G+ D++KAL
Sbjct: 123 ALKAGVDLLIATPGRLLDHLRQGALSLAA----LRHLVFDEADRMLDMGFMDEIKALLKQ 178
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWIS 144
IP Q LL SAT ++ L K++L +P ++ EV P+N V+Q +
Sbjct: 179 IPADRQTLLFSATCDDNLFALSKVLLRDPALI----------EVAPRNTTAAEVEQRVYT 228
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
KL + +LK++ ALIF+ T A +L L K GI + + +L Q +R
Sbjct: 229 VDGDRKLALVEHMLKVK-GWAPALIFSRTRQGADKLAQQLGKTGINALAFHGDLSQGARE 287
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
+L EF AG L+ATD RG+D
Sbjct: 288 KVLLEFRAGTLQALVATDVA---------------------------------ARGLDIT 314
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 315 DLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|410611270|ref|ZP_11322369.1| ATP-dependent RNA helicase rhlB [Glaciecola psychrophila 170]
gi|410169121|dbj|GAC36258.1| ATP-dependent RNA helicase rhlB [Glaciecola psychrophila 170]
Length = 438
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 138/281 (49%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + ++ FS+ L+ILV+DEAD +L G+ D+K + ++P+ Q
Sbjct: 125 DILVATPGRLLDLYNQNAVK---FSE-LEILVMDEADRMLDMGFIHDIKKIIKLLPQKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT S D+ KL K +++NP +++ D V + W+ ++ K +L
Sbjct: 181 NLMFSATFSDDIRKLAKGLVNNPVEISVSPANTTVDLV------EQWVYPVDKSKKSQLL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
T L E ++ L+F+ T A R+ LE GI SA ++ Q +R L +F G
Sbjct: 235 THLIKENDWQQVLVFSRTKHGANRIAKQLEAHGISSAAIHGNKSQGARTKALADFKQGKV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
LIATD RG+D + V+NF++P
Sbjct: 295 KALIATDIA---------------------------------ARGLDIDQLPQVVNFDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA TG ++S+V+ DE K +I+ +
Sbjct: 322 NVPEDYVHRIGRTGRAGATGQAISMVTQDEFKELVDIEILI 362
>gi|294139294|ref|YP_003555272.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293325763|dbj|BAJ00494.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 478
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + G + +F + L++L+LDEAD +L G+ D+K + V+P Q
Sbjct: 125 DILVATPGRLLDLYNQGAV---NF-NQLEVLILDEADRMLDMGFIHDIKKILRVLPAKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT S D+ KL K +++NP E+ K+V+Q+ ++ K ++
Sbjct: 181 NLMFSATFSDDIRKLAKGLVNNPV-----EISVTPRNATAKSVEQYIYMVDQKQKTAALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L+K + K+ L+F+ T A R+ LE + +A ++ Q +R L F G
Sbjct: 236 HLIK-QNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKNGAV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NF++P
Sbjct: 295 RVLVATDIA---------------------------------ARGIDIDQLPNVVNFDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA +G +VSLVS DE K+ +I+ +
Sbjct: 322 NVPEDYVHRIGRTGRAGASGQAVSLVSGDESKLLRDIERLI 362
>gi|326911793|ref|XP_003202240.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Meleagris gallopavo]
Length = 447
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 133 ALAKKPHIIIATPGRLVDHLEN----TKGFNLRALKFLVMDEADRILNMDFETEVDKILK 188
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 189 VIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 243
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL ++F +T + R L L G + L+ ++ QN RL L
Sbjct: 244 FKDSYLVYILN-ELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLN 302
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 303 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 329
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+ +G
Sbjct: 330 VINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIG 378
>gi|302917131|ref|XP_003052376.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
gi|256733315|gb|EEU46663.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
Length = 768
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 136/273 (49%), Gaps = 44/273 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+++IL+LDEAD +L G+ D+L + +P+
Sbjct: 377 PDVIIATPGRFIDHMRN----SASFNVDTVEILILDEADRMLEDGFADELNEILTTLPKS 432
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +S VD+L ++ ++ P + + D + + + VQ+F + +K +
Sbjct: 433 RQTMLFSATMTSTVDRLIRVGMNKPARVMV----DSQKKTVGTLVQEFVRLRPGREEKRM 488
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L + L +++ +IF A R ++ G+ A L+ + Q R+ +EEF
Sbjct: 489 GYLAYICKTLYRERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRISSVEEFRD 548
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G YL+ATD L S RG+D K V TVIN+
Sbjct: 549 GKVSYLLATD----------------------------LAS-----RGLDIKGVDTVINY 575
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PD 304
E PQ+ YVHR+GRT RA G +++L + PD
Sbjct: 576 EAPQSLEIYVHRVGRTARAGRKGTAITLAAEPD 608
>gi|167752757|ref|ZP_02424884.1| hypothetical protein ALIPUT_01018 [Alistipes putredinis DSM 17216]
gi|167659826|gb|EDS03956.1| DEAD/DEAH box helicase [Alistipes putredinis DSM 17216]
Length = 393
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 144/295 (48%), Gaps = 44/295 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL G DI+IATPG + + ++ D++ VLDEAD +L G+ D+K L +
Sbjct: 140 ALRGGVDILIATPGRLHDLIGQRFVEL----DAITHFVLDEADRMLDMGFVADIKRLLPL 195
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P+ Q L SAT +D+ L K +L +P + + V D + + + +++ E+
Sbjct: 196 LPKSRQTLFFSATMPADIVALSKSMLTDPVRVEVTPVASAVDAI---DQRVYFVEKPEKK 252
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
KLL ++LL+ E K L+F+ T A + L K GI+S ++ QN R +L +
Sbjct: 253 KLL--VSLLREE--DKSVLVFSRTKHGADNISRLLSKSGIRSEAIHGNKSQNHRQRVLTD 308
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F +G ++ATD RGID + + V
Sbjct: 309 FKSGKIRVMVATDIA---------------------------------ARGIDIRELEIV 335
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDS 324
IN+++P YVHRIGRTGRA ++G +++ +PDE + ++I+ G N ++
Sbjct: 336 INYDLPDVPETYVHRIGRTGRAGHSGTALTFCTPDERPLMKDIQRLTGKKLNAET 390
>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|385821240|ref|YP_005857627.1| DEAD/DEAH box helicase [Lactobacillus casei LC2W]
gi|385824432|ref|YP_005860774.1| DEAD/DEAH box helicase [Lactobacillus casei BD-II]
gi|409998335|ref|YP_006752736.1| DEAD/DEAH box helicase [Lactobacillus casei W56]
gi|417981730|ref|ZP_12622394.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|417984551|ref|ZP_12625171.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|417987806|ref|ZP_12628359.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|417997288|ref|ZP_12637547.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|418000194|ref|ZP_12640390.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|418003339|ref|ZP_12643426.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|418006207|ref|ZP_12646168.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|418008368|ref|ZP_12648235.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|418011933|ref|ZP_12651680.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|418013012|ref|ZP_12652674.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
gi|406359347|emb|CCK23617.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus casei W56]
gi|410521133|gb|EKP96098.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|410522198|gb|EKP97147.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|410525109|gb|EKQ00016.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|410533048|gb|EKQ07736.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|410537114|gb|EKQ11693.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|410542456|gb|EKQ16903.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|410544369|gb|EKQ18698.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|410547046|gb|EKQ21289.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|410551341|gb|EKQ25407.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|410556209|gb|EKQ30122.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
Length = 502
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 145/308 (47%), Gaps = 46/308 (14%)
Query: 12 QLKVVQLTSSMPASDLRAA---LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68
Q K +++ + +D+R L+ P IV+ TPG + + L+ ++ LK+LVL
Sbjct: 94 QDKKIKVQAVYGGADIRRQIRQLSEHPQIVVGTPGRILDHIGRHTLKLQN----LKVLVL 149
Query: 69 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 128
DEAD +L G+ DD++ + +P Q LL SAT + + +L +H P + +
Sbjct: 150 DEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATIPASIMRLTNKFMHEPVTVKIK---- 205
Query: 129 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
E+ V+Q+++ + +K + L ++ ALIF T L L+ G
Sbjct: 206 -AKELTADTVEQYYVRAKDYEKFDVMTRLFDVQ-DPDLALIFGRTKRRVDELTRGLKARG 263
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
++ ++ +L Q R+ +L +F +G D+L+ATD
Sbjct: 264 YRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATD-------------------------- 297
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D V V N+++PQ+ YVHRIGRTGRA + G SV+ V+P+E++
Sbjct: 298 -------VAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEY 350
Query: 309 FEEIKSFV 316
I+
Sbjct: 351 LHTIEDLT 358
>gi|342877843|gb|EGU79271.1| hypothetical protein FOXB_10221 [Fusarium oxysporum Fo5176]
Length = 485
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 145/289 (50%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L ++K FS +LK L++DEAD LL + + +
Sbjct: 174 ALGKKPHIIVATPGRLVDHLE----KTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILK 229
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
IPR + L SAT SS ++ L++ L +P ++ + K + + + Q +I
Sbjct: 230 FIPRERRTYLFSATISSKIESLQRASLRDPVRVS---ISSNKYQTV-STLLQHYIFIPHV 285
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ L+ E V K +IFT T+ R+ + L G + L+ +L Q SRL L
Sbjct: 286 RKDVYLIYLIN-EHVGKSTIIFTRTVWETQRISILLRTLGFGAIPLHGQLSQTSRLGALN 344
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G D L+ATD RG+D +V
Sbjct: 345 KFRSGTRDILVATDVA---------------------------------ARGLDIPSVDV 371
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+N+++PQ++ Y+HR+GRT RA +G ++S+V+ +++IF I++ +G
Sbjct: 372 VLNYDLPQDSKTYIHRVGRTARAGKSGIAISVVTQYDVEIFTRIEAALG 420
>gi|154417727|ref|XP_001581883.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121916114|gb|EAY20897.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 441
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 154/328 (46%), Gaps = 56/328 (17%)
Query: 15 VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADL 73
+ + + +D +AL P IV+ATPG + L + + FS D+L+ LVLDE D
Sbjct: 102 ICPIIGGLAITDQASALEKNPHIVVATPGRILHHLRSASKGNTRFSFDNLQYLVLDEVDR 161
Query: 74 LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT---LPEVG--- 127
L GY DD+ + +P Q L SAT S VD L I+ P + LP VG
Sbjct: 162 LFKDGYWDDVLEIIKYLPEKRQTLCFSATKSDQVDLLT--IMTKPPSTSSCPLPSVGKSW 219
Query: 128 ----------DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLEL---VQKKALIFTNTI 174
+ D++ PK ++ + + + +Y++ +++ + + K+ ++F +T
Sbjct: 220 FSDDKLTFYWEPTDDLKPK-IEHVKVLVQDEGREVYLMIIIQKLMEADLYKQVIVFASTK 278
Query: 175 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 234
+ A + L L F K+A++++++ ++ RL LEEF AG L+ATD
Sbjct: 279 EAAQTITLILRNFSYKTAVMHSDMQESERLKELEEFRAGRQRILVATD------------ 326
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
RG+D V VI+F PQNAA YVHR GRTGRA
Sbjct: 327 ---------------------VAARGLDIPFVDNVIHFNPPQNAATYVHRAGRTGRAGRE 365
Query: 295 GASVSLVSPDEMKIFEEIKSFVGDDENE 322
G S+ VS E KI +EI+ +G E
Sbjct: 366 GRSILFVSGREKKIEQEIEKEIGQQFTE 393
>gi|393199138|ref|YP_006460980.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|406666247|ref|ZP_11074015.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
gi|327438469|dbj|BAK14834.1| superfamily II DNA and RNA helicase [Solibacillus silvestris
StLB046]
gi|405385786|gb|EKB45217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus isronensis
B3W22]
Length = 517
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 138/288 (47%), Gaps = 52/288 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ D ++ LVLDEAD +L+ G+ DD+ A+
Sbjct: 116 ALKNKPQIIVGTPGRIQDHINRRTLRL----DEVQTLVLDEADEMLNMGFIDDINAILEN 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + K+ + + +P I+ + E+ +N++QF++ +ER+
Sbjct: 172 VPSDRQTLLFSATMPPAIRKIAETFMKDPEIVKIK-----AKELTMENIEQFFVKATERE 226
Query: 150 KLLYILTLL---KLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
K + LL K EL A+IF T L L G + ++ +L Q R+ +
Sbjct: 227 KFDALSRLLDSQKPEL----AIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISV 282
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L +F G D LIATD RG+D V
Sbjct: 283 LRQFKEGKIDILIATDVA---------------------------------ARGLDISGV 309
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM---KIFEE 311
V NF++PQ+ YVHRIGRTGRA +G +V+ V+P EM +I EE
Sbjct: 310 THVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLRIVEE 357
>gi|417994179|ref|ZP_12634513.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
gi|410530495|gb|EKQ05268.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
Length = 502
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 145/308 (47%), Gaps = 46/308 (14%)
Query: 12 QLKVVQLTSSMPASDLRAA---LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68
Q K +++ + +D+R L+ P IV+ TPG + + L+ ++ LK+LVL
Sbjct: 94 QDKKIKVQAVYGGADIRRQIRQLSEHPQIVVGTPGRILDHIGRHTLKLQN----LKVLVL 149
Query: 69 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 128
DEAD +L G+ DD++ + +P Q LL SAT + + +L +H P + +
Sbjct: 150 DEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATIPASIMRLTNKFMHEPVTVKIK---- 205
Query: 129 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
E+ V+Q+++ + +K + L ++ ALIF T L L+ G
Sbjct: 206 -AKELTADTVEQYYVRAKDYEKFDVMTRLFDVQ-DPDLALIFGRTKRRVDELTRGLKARG 263
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
++ ++ +L Q R+ +L +F +G D+L+ATD
Sbjct: 264 YRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATD-------------------------- 297
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D V V N+++PQ+ YVHRIGRTGRA + G SV+ V+P+E++
Sbjct: 298 -------VAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEY 350
Query: 309 FEEIKSFV 316
I+
Sbjct: 351 LHTIEDLT 358
>gi|312883216|ref|ZP_07742944.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369079|gb|EFP96603.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 399
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 147/308 (47%), Gaps = 45/308 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 70
+ LK + L + + AL DIV+ATPG + + + + ++ILVLDE
Sbjct: 100 LSLKSIALYGGVDDKAQKQALIDGIDIVVATPGRLLDLYGKRAI----YFEEIEILVLDE 155
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
AD +L G+ + + + +PR Q LL SAT S+ V L K ++NPY E+
Sbjct: 156 ADKMLDMGFIEGINKILDRLPRDIQNLLFSATLSNKVRDLAKTAVYNPY-----EISIAA 210
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
++ KN++Q W+ ++DK +L+ L +ALIF T A +L LEK GI
Sbjct: 211 NQASKKNIEQ-WLITVDKDKKSALLSHLIQHNNWDQALIFIETKHGAAKLASQLEKRGIY 269
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ ++ Q R +L++F +G YLIAT
Sbjct: 270 AEAFHSGRSQAIRSKLLDDFKSGEIKYLIAT----------------------------- 300
Query: 251 LDSEFGV-VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
GV RGID + + VIN+++P A YVHRIGRTGRA G ++S VS D K
Sbjct: 301 -----GVGARGIDIEGLSRVINYDLPFPADEYVHRIGRTGRADANGEAISFVSKDNFKNL 355
Query: 310 EEIKSFVG 317
I+S +G
Sbjct: 356 CMIESRLG 363
>gi|431908355|gb|ELK11952.1| Putative ATP-dependent RNA helicase DDX47 [Pteropus alecto]
Length = 472
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 155/319 (48%), Gaps = 52/319 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 155 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 210
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + LL SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 211 VIPRDRKTLLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 265
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 266 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 324
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 325 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 351
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD----ENEDS 324
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G ED
Sbjct: 352 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTEDD 411
Query: 325 NIIAPFPLLAQNAVESLRY 343
++ +L + E+ R+
Sbjct: 412 EVM----MLTERVTEAQRF 426
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|357500171|ref|XP_003620374.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495389|gb|AES76592.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 431
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 146/310 (47%), Gaps = 46/310 (14%)
Query: 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVL 68
++ +K L + +A P I++ TPG + L +K FS + LK LVL
Sbjct: 98 EIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLDHLK----NTKGFSLARLKYLVL 153
Query: 69 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 128
DEAD LL+ +E+ L + +IPR + L SAT + V+KL+++ L NP + E
Sbjct: 154 DEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKI---ETSS 210
Query: 129 VKDEVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
V Q ++ +D L+YILT E+ +++FT T D L L L
Sbjct: 211 KYSTVDTLKQQYRFLPAKHKDCYLVYILT----EMAGSTSMVFTRTCDSTRLLALILRNL 266
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 247
G+K+ +N + Q RL L +F +G + L+ TD
Sbjct: 267 GLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVAS---------------------- 304
Query: 248 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
RG+D V VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++
Sbjct: 305 -----------RGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELE 353
Query: 308 IFEEIKSFVG 317
+ +I+ +G
Sbjct: 354 WYVQIEKLIG 363
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 133/281 (47%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + ++ FS L++LVLDEAD +L G+ D+K + A++P Q
Sbjct: 125 DVLVATPGRLLDLYQQNAVK---FSQ-LEVLVLDEADRMLDMGFIRDIKKILALLPEKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S D+ L K ++HNP +++ K V+Q+ + ++ K +
Sbjct: 181 NLLFSATFSDDIRALAKGLVHNPEQISV-----SPPNATAKTVEQYLYNVDKKKKPSILA 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L+K E + LIF+ T A RL FLE + +A ++ Q +R+ LE F G
Sbjct: 236 KLIK-ENDWSQVLIFSKTKHGANRLSRFLESENVSAAAIHGNKSQGARIKALEHFKTGQV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + V+NFE+P
Sbjct: 295 RALVATDI---------------------------------AARGLDIPQLPQVVNFELP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA +G + SLV DE K I+ +
Sbjct: 322 HVPEDYVHRIGRTGRAGESGKAYSLVCADEAKELFAIERLI 362
>gi|430749671|ref|YP_007212579.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430733636|gb|AGA57581.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 517
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 133/282 (47%), Gaps = 53/282 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I+I TPG + ++ ++ D ++ +VLDEAD +L G+ +D+ + ++
Sbjct: 116 ALKKKPQIIIGTPGRLLDHINRKTIRL----DDVQTVVLDEADEMLDMGFMEDITTILSL 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWIS 144
+P Q +L SAT ++ KL + L NP ++ VIPKN ++Q +I
Sbjct: 172 VPEERQTMLFSATMPPNIQKLAQQFLRNPEHVS----------VIPKNITAPSIEQIYIE 221
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
ER+K + LL +E A++F T L L+K G + L+ +L QN R
Sbjct: 222 VHEREKFEALSRLLDME-SPDLAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRD 280
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
++ +F G D L+ATD RG+D
Sbjct: 281 TVMRKFRDGSIDVLVATDVA---------------------------------ARGLDVS 307
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
V VINF++PQ+ YVHRIGRTGRA G + + V+P E+
Sbjct: 308 GVTHVINFDLPQDPESYVHRIGRTGRAGKEGVAYTFVTPREI 349
>gi|402885238|ref|XP_003906071.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Papio anubis]
Length = 455
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 155/319 (48%), Gaps = 52/319 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD----ENEDS 324
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G +D
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDD 394
Query: 325 NIIAPFPLLAQNAVESLRY 343
++ +LA+ E+ R+
Sbjct: 395 EVM----MLAERVAEAQRF 409
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 134/281 (47%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q +++LVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 145 EILIATPGR----LLDHVQQKTVNLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQ 200
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV+Q E DK +
Sbjct: 201 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTATNVRQIVFEVHESDKSGAVA 255
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LEK GI + ++ + Q+ R+ L+ F G
Sbjct: 256 QLIR-ERELKQVIVFCNSKIGASRLARVLEKDGIVATAIHGDRSQSERMQALDAFKRGEI 314
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 315 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 341
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL S +E K +I+ +
Sbjct: 342 FNAEDYVHRIGRTGRAGASGDALSLCSANERKQLADIEKLI 382
>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
Length = 502
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 145/308 (47%), Gaps = 46/308 (14%)
Query: 12 QLKVVQLTSSMPASDLRAA---LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68
Q K +++ + +D+R L+ P IV+ TPG + + L+ ++ LK+LVL
Sbjct: 94 QDKKIKVQAVYGGADIRRQIRQLSEHPQIVVGTPGRILDHIGRHTLKLQN----LKVLVL 149
Query: 69 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 128
DEAD +L G+ DD++ + +P Q LL SAT + + +L +H P + +
Sbjct: 150 DEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATIPASIMRLTNKFMHEPVTVKIK---- 205
Query: 129 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
E+ V+Q+++ + +K + L ++ ALIF T L L+ G
Sbjct: 206 -AKELTADTVEQYYVRAKDYEKFDVMTRLFDVQ-DPDLALIFGRTKRRVDELTRGLKARG 263
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
++ ++ +L Q R+ +L +F +G D+L+ATD
Sbjct: 264 YRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATD-------------------------- 297
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D V V N+++PQ+ YVHRIGRTGRA + G SV+ V+P+E++
Sbjct: 298 -------VAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEY 350
Query: 309 FEEIKSFV 316
I+
Sbjct: 351 LHTIEDLT 358
>gi|89072882|ref|ZP_01159439.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
gi|89051404|gb|EAR56859.1| putative ATP-dependent RNA helicase RhlE [Photobacterium sp. SKA34]
Length = 496
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 140/286 (48%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + S ++ F D ++ILVLDEAD +L G+ D++ + A++P+ Q
Sbjct: 125 DVLVATPGRLMDLHSQNAVK---FRD-VEILVLDEADRMLDMGFIRDIRKILALLPKERQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S ++ +L K ++ NP V+ +V P+N V+Q WI ++ K
Sbjct: 181 NLLFSATFSDEIRELAKGLVSNP----------VEIDVNPRNQTARTVKQ-WICPVDQKK 229
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+LT L + K+ L+FT T A +L LE GI +A ++ Q +R L F
Sbjct: 230 KPNLLTKLLNKRNWKQVLVFTKTKHGANKLATHLESRGISAAAIHGNKSQGARTKALANF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + + V+
Sbjct: 290 KSGDIRVLVATDI---------------------------------AARGLDIEQLPQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P A YVHRIGRTGRA G ++SLVS +E K I+
Sbjct: 317 NFDLPHVAEDYVHRIGRTGRAGCVGEAISLVSAEEAKDLAAIERLT 362
>gi|355564029|gb|EHH20529.1| Putative ATP-dependent RNA helicase DDX47 [Macaca mulatta]
gi|355785916|gb|EHH66099.1| Putative ATP-dependent RNA helicase DDX47 [Macaca fascicularis]
gi|380786753|gb|AFE65252.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
gi|383418889|gb|AFH32658.1| putative ATP-dependent RNA helicase DDX47 isoform 1 [Macaca
mulatta]
Length = 455
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 155/319 (48%), Gaps = 52/319 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD----ENEDS 324
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G +D
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDD 394
Query: 325 NIIAPFPLLAQNAVESLRY 343
++ +LA+ E+ R+
Sbjct: 395 EVM----MLAERVAEAQRF 409
>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 571
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 213 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 268
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 269 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKHSAVV 323
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 324 QLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEI 382
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 383 EALVATDV---------------------------------AARGLDIVELPAVINFDLP 409
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 410 FNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 450
>gi|390570352|ref|ZP_10250619.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389937684|gb|EIM99545.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 486
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPAERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTATNVTQIVYEVAEGDKTGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL LE+ G+ + ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRGLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRTQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLFSPNERKQLADIEKLI 376
>gi|109095724|ref|XP_001086352.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 3
[Macaca mulatta]
Length = 455
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 155/319 (48%), Gaps = 52/319 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD----ENEDS 324
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G +D
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPVFPTQDD 394
Query: 325 NIIAPFPLLAQNAVESLRY 343
++ +LA+ E+ R+
Sbjct: 395 EVM----MLAERVAEAQRF 409
>gi|329895752|ref|ZP_08271143.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
gi|328922182|gb|EGG29538.1| ATP-dependent RNA helicase DbpA [gamma proteobacterium IMCC3088]
Length = 462
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 143/303 (47%), Gaps = 42/303 (13%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+KVV L P R +L +V+ TPG + L+ G LQ D + LVLDEAD
Sbjct: 102 IKVVMLCGGKPFGAQRDSLQHGAHVVVGTPGRIHDHLTKGTLQI----DQVSTLVLDEAD 157
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+L G+ D ++A+ A +P+ Q LL SAT ++ K+ + I NP ++ + + DV E
Sbjct: 158 RMLDMGFADTMQAIIAEVPKNRQTLLFSATYPDNIQKISRSIQANPAMVQVDD--DVAHE 215
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
++Q + + ++ +L L + K A +F NT + FL + I++
Sbjct: 216 --EGVIEQLFFEIKKHERYPTLLALFE-HYRPKNAAVFCNTKKQCAEVADFLNEHDIEAK 272
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
L+ ++ Q R +L +F G L+ATD
Sbjct: 273 ALHGDMDQRERDQVLLQFANGSCPVLVATDVA---------------------------- 304
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RG+D K++ V+N+E+P++ YVHRIGRTGRA TG + SLV+ E +I
Sbjct: 305 -----ARGLDIKSLAMVVNYELPRDPEIYVHRIGRTGRAGETGLAFSLVTESETPRLRQI 359
Query: 313 KSF 315
+ +
Sbjct: 360 EQY 362
>gi|119616690|gb|EAW96284.1| hCG27698, isoform CRA_d [Homo sapiens]
Length = 392
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 75 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 130
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 131 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 185
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 186 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 244
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 245 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 271
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 272 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 320
>gi|389613609|dbj|BAM20136.1| helicase, partial [Papilio xuthus]
Length = 255
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 19/214 (8%)
Query: 254 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
E GV RGIDF++V VINF+ P + YVHR GRT R N G+ +S VS E + + ++
Sbjct: 36 ESGVSRGIDFQHVSNVINFDFPLDVNSYVHRAGRTARGNNXGSVLSFVSLREKPLMDAVE 95
Query: 314 SFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSE 373
+ N + ++ + A VE RYR+ D ++VT+ AVRE+R ++++ E+LN +
Sbjct: 96 EHLSKGFNGEK-VLQKYEF-ALEEVEGFRYRSRDAWRAVTRXAVREARLKEIKQELLNCK 153
Query: 374 KLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLLDA------------KTQEACK 421
KL+ +FE NP DL L+ DK L L VP+YLL A + E K
Sbjct: 154 KLQGYFEENPTDLAALRRDKALHTVRLQPQLAHVPEYLLPAALRNDTPEPDADQPPEPTK 213
Query: 422 MVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFS 455
K +A G+ + Q R+SDPL+SF+
Sbjct: 214 KRKHKQANFGSAKRHKYQA-----RQSDPLRSFA 242
>gi|297538309|ref|YP_003674078.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
versatilis 301]
gi|297257656|gb|ADI29501.1| DEAD/DEAH box helicase domain protein [Methylotenera versatilis
301]
Length = 466
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
++++ATPG + + +Q + ++ILVLDEAD +L G+ DLK + A++P+ Q
Sbjct: 138 EVLVATPGRLLDHIEQKTIQL----NQVQILVLDEADRMLDMGFMPDLKRILALLPKQRQ 193
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT S+D+ KL L P ++ + D NV Q ++ DK ++
Sbjct: 194 NLMFSATFSNDIKKLADEFLTKPQLIEVARSNATND-----NVTQKVYEVAQSDKETLLI 248
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LLK + +IFT T A RL L + GI + ++ + Q R+ L+ F AG
Sbjct: 249 QLLKAANAS-QVIIFTKTKITASRLSRSLAREGIAADAIHGDKTQQERIKALDGFKAGTI 307
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + VIN+E+P
Sbjct: 308 TALVATDV---------------------------------AARGLDISELPMVINYEIP 334
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA G ++S VSP+E K EI+ +
Sbjct: 335 SAPEDYVHRIGRTGRAGALGIAISFVSPEEDKYIVEIEKLI 375
>gi|256419120|ref|YP_003119773.1| DEAD/DEAH box helicase [Chitinophaga pinensis DSM 2588]
gi|256034028|gb|ACU57572.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
2588]
Length = 414
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 43/287 (14%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
LA D++IATPG M +S G + IL+LDEAD +L G+ D++ + +
Sbjct: 121 LAQGVDVLIATPGRMFDLISQGFIDLSQTG----ILILDEADHMLDLGFIRDIRDVLKHL 176
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 150
PR Q L SAT D+ L +++NP + + + + KNVQ DK
Sbjct: 177 PRRHQTLFFSATIDEDIKDLAYSVVNNPIRIQIS-----PQDPVSKNVQHAVAYVGMDDK 231
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ L+K E + K L+F T A R+ +E+ GIKS ++ Q++RL +++EF
Sbjct: 232 RFFLERLVK-EFPENKILVFVRTKVRAERVAAAMERVGIKSLTMHGGKEQDNRLQVMDEF 290
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G LI TD RGID +V V+
Sbjct: 291 KKGDIKLLITTDVN---------------------------------ARGIDIPDVEYVV 317
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
N+++P YVHR+GRTGR G +VS S +E + + I+ ++G
Sbjct: 318 NYDLPDVPENYVHRVGRTGRGVKKGQAVSFCSDEEKPVLDAIQQYLG 364
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 213 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 268
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 269 TLLFSATFSGEIKKLASTYLRNPQTIEV-----ARSNSTNANVTQIVYDVAEGDKQAAVV 323
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + K+ ++F N+ A RL LE+ G+ ++ ++ + Q R+ L+ F G
Sbjct: 324 QLLR-DRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQIERMQALDAFKRGEI 382
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 383 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 409
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+A YVHRIGRTGRA TG ++SL SP+E K +I+ +
Sbjct: 410 FSAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADIEKLI 450
>gi|344940973|ref|ZP_08780261.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344262165|gb|EGW22436.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 419
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 139/294 (47%), Gaps = 53/294 (18%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L G DI++ATPG + ++ Q+ D ++ L+LDEAD +L G+ D++ + A +
Sbjct: 122 LRGGVDILVATPGRLLDLVN----QNAVKLDQVETLILDEADRMLDMGFIRDIRKIIAFL 177
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISC 145
P+ Q LL SAT S D+ KL +L NP +K EV P+N V+Q
Sbjct: 178 PKKRQNLLFSATFSEDIRKLTTGLLVNP----------IKIEVAPRNTAAELVEQVAYLV 227
Query: 146 SERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
++ +K + L+K E ++ L+FT T A RL L K IK+A ++ Q +R
Sbjct: 228 NKANKTELLCHLIK-EHDWQQVLVFTTTKHGANRLTEKLNKVDIKAAAIHGNKSQGARTS 286
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
L F AG L+ATD RGID
Sbjct: 287 ALSGFKAGEIRVLVATDVA---------------------------------ARGIDINL 313
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
+ V+NFE+P+ YVHRIGRTGRA G ++SLVS DE ++ +G +
Sbjct: 314 LPHVVNFELPRAPEDYVHRIGRTGRAGEEGQAISLVSHDEYSFLRLVEKLIGKE 367
>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 490
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 147/295 (49%), Gaps = 45/295 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L ++K FS +LK L++DEAD LL + + +
Sbjct: 179 ALGKKPHIIVATPGRLVDHLE----KTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILK 234
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSE 147
IPR + L SAT SS ++ L++ L +P ++ + K + + +Q + +I +
Sbjct: 235 FIPRERRTYLFSATLSSKIESLQRASLRDPVRVS---ISSNKYQTVSTLIQHYMFIPFPQ 291
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+D Y++ L+ E K ++FT T+ R+ + L G + L+ +L Q+SRL L
Sbjct: 292 KDT--YLVYLVN-EHTGKSTIVFTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGAL 348
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG D L+ATD RG+D V
Sbjct: 349 NKFRAGTRDILVATDVA---------------------------------ARGLDIPKVD 375
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
V+N++MPQ++ Y+HR+GRT RA +G +++LV+ +++I+ I++ +G E
Sbjct: 376 VVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQYDLEIYARIEAALGKKLTE 430
>gi|402077170|gb|EJT72519.1| ATP-dependent RNA helicase DRS1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 827
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 138/277 (49%), Gaps = 45/277 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 405 PDVIIATPGRFIDHMRN----SASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 460
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD L + L+ P + + D + + + VQ+F E ++
Sbjct: 461 RQTMLFSATMTSSVDTLIRAGLNKPVRIMV----DSQKKTVGTLVQEFVRLRPGREEKRM 516
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ L K +L ++ +IF +A ++ G+ A L+ + Q R+ +E+F
Sbjct: 517 GYLVHLCK-KLYTERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMNQTQRIQSVEDFR 575
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD L S RG+D K V TVIN
Sbjct: 576 DGKVSFLLATD----------------------------LAS-----RGLDIKGVDTVIN 602
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
+E PQ+ YVHR+GRT RA +G +V+L + + K+
Sbjct: 603 YEAPQSLEIYVHRVGRTARAGRSGVAVTLAAEPDRKV 639
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 136/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + +++LVLDEAD +L G+ DL+ + ++P Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPTERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTATNVTQIVYEVAEGDKTGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LE+ G+ + ++ + Q+ R+ L+ F G
Sbjct: 250 QLIR-ERSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLFSPNERKQLADIEKLI 376
>gi|429859431|gb|ELA34212.1| ATP-dependent RNA helicase drs1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 772
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 138/277 (49%), Gaps = 45/277 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 371 PDVIIATPGRFIDHMRN----SASFNVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 426
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT +S VD+L ++ ++ P + + D + + + VQ+F E ++
Sbjct: 427 RQTMLFSATMTSSVDRLVRVGMNKPARVMV----DSQKKTVGTLVQEFIRLRPGREEKRM 482
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y++ + K + ++ +IF A R ++ G+ A L+ + Q R+ +E F
Sbjct: 483 GYLIHICKT-MHTERVIIFFRQKKEAHRARIIFGMLGMSCAELHGSMNQAQRIASVENFR 541
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +YL+ATD L S RG+D K V TVIN
Sbjct: 542 DGKVNYLLATD----------------------------LAS-----RGLDIKGVDTVIN 568
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
+E PQ YVHR+GRT RA +G +V+L + + K+
Sbjct: 569 YEAPQKLEIYVHRVGRTARAGRSGVAVTLAAEPDRKV 605
>gi|90408477|ref|ZP_01216636.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
gi|90310409|gb|EAS38535.1| ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
Length = 426
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 136/286 (47%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + ++ K L++LVLDEAD +L G+ D+K + +P Q
Sbjct: 125 DVLVATPGRLLDLYQQNAVRFKQ----LEVLVLDEADRMLDMGFIHDIKRIIKFLPEKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S+D+ KL K ++++P V+ V P+N V QF + K
Sbjct: 181 NLLFSATFSNDIRKLAKGLVNDP----------VEISVSPRNTTAESVTQFIYEVDKTKK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+ TL+K E K+ L+F+ T A RL LE GI SA ++ Q +R L F
Sbjct: 231 SPLLSTLIK-ENKWKQVLVFSKTKHGANRLVKQLEGRGILSAAIHGNKSQAARTRALASF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RGID + V+
Sbjct: 290 KEGKITVLVATDIA---------------------------------ARGIDIDQLEQVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NF++P + YVHRIGRTGRA N G ++SLV DE K+ ++I+ +
Sbjct: 317 NFDLPHVSEDYVHRIGRTGRAGNKGEAISLVCEDEFKLLKDIEKLI 362
>gi|152991450|ref|YP_001357172.1| DEAD-box ATP dependent DNA helicase [Nitratiruptor sp. SB155-2]
gi|151423311|dbj|BAF70815.1| ATP-dependent RNA helicase, DEAD-box family [Nitratiruptor sp.
SB155-2]
Length = 471
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 133/281 (47%), Gaps = 44/281 (15%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V+ATPG + L +G ++ K +VLDEAD +L G+ DD+KA+ +P Q
Sbjct: 120 VVVATPGRLLDLLKSGKIELNP-----KFVVLDEADEMLDMGFLDDIKAIFNYLPTNRQT 174
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILT 156
LL SAT + +L + ILH+P +++ K EV N++QF+ E ++ ++
Sbjct: 175 LLFSATMPQAIKELAQQILHSPEFISI-----TKKEVTNVNIKQFYYVVDEHERDEALIR 229
Query: 157 LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
LL + K++IF RL FLE G + L+ ++ Q R ++ F G +
Sbjct: 230 LLDYK-NPTKSIIFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGNIE 288
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
LIATD RG+D +V V N+ +P
Sbjct: 289 ILIATDVA---------------------------------ARGLDISDVSHVFNYHIPF 315
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+ YVHRIGRTGRA G ++SLV+P E K I+ VG
Sbjct: 316 DPESYVHRIGRTGRAGKEGIAISLVTPHEFKQLLRIQKEVG 356
>gi|338210694|ref|YP_004654743.1| DEAD/DEAH box helicase [Runella slithyformis DSM 19594]
gi|336304509|gb|AEI47611.1| DEAD/DEAH box helicase domain protein [Runella slithyformis DSM
19594]
Length = 415
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 139/286 (48%), Gaps = 52/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+V+ATPG + +S G L+ D +++L+LDEAD +L G+ D++ L +PR Q
Sbjct: 127 DVVVATPGRLFDLVSQGHLKL----DRVEVLILDEADHMLDLGFIKDIRDLLRHLPRQRQ 182
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP-----KNVQQFWISCSERDK 150
L SAT DK+KKL +L G ++ ++ P KN++ F DK
Sbjct: 183 TLFFSATID---DKIKKL------AYSLINSGAIRIQISPKDPVAKNIEHFVAYVEMDDK 233
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ ++ E + K ++F T A R+ LE+ IKS L+ + Q RL L +F
Sbjct: 234 RFFLERIIN-EHPESKIMVFVRTKVRAERVAKALERMEIKSLTLHGDKEQKDRLAALNDF 292
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G LIATD + RGID V VI
Sbjct: 293 KSGKTKVLIATDIS---------------------------------ARGIDITGVDYVI 319
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N+++P+ A YVHR+GRTGR G +VS SP+E I EEI++++
Sbjct: 320 NYDLPEQAENYVHRVGRTGRGTLKGNAVSFCSPEEKPILEEIETYL 365
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 150/308 (48%), Gaps = 46/308 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
VQ V+ M A L ALA P ++IATPG + L +K F+ +LK LV+D
Sbjct: 113 VQTAVIVGGIDMMAQSL--ALAKKPHVIIATPGRLIDHLEN----TKGFNLRALKYLVMD 166
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD +L+ +E ++ + VIPR + L SAT + V KL++ L +P +
Sbjct: 167 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS---- 222
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
K + + K +QQ+++ + K Y++ +L EL +IF +T + R L L G
Sbjct: 223 KYQTVEK-LQQYYVFIPSKFKDSYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGF 280
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ L+ ++ QN RL L +F A L+ATD
Sbjct: 281 TAIPLHGQMNQNKRLGSLNKFKAKARSVLLATDVAS------------------------ 316
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++F
Sbjct: 317 ---------RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELF 367
Query: 310 EEIKSFVG 317
+ I+ +G
Sbjct: 368 QRIEHLIG 375
>gi|403164869|ref|XP_003324940.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165434|gb|EFP80521.2| hypothetical protein PGTG_06477 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 518
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 145/294 (49%), Gaps = 44/294 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL+ P I++ATPG + L +K FS +LK L++DEAD LL + + +
Sbjct: 186 ALSKRPHIIVATPGRLHDHLE----NTKGFSLRNLKYLIMDEADRLLDMDFGPVIDKILK 241
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT ++ V KL++ L +P + + D D ++ Q ++ +
Sbjct: 242 VIPRERRTYLFSATMTTKVAKLQRASLVSPVKVQMSTKYDTVDGLV-----QLYMFFPFK 296
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
+K Y++ L+ EL K +IFT T+ A RL + L G S L+ +L Q++RL L
Sbjct: 297 NKDAYLVYLVN-ELSGKSMIIFTRTVYDANRLSIILRLLGFPSIPLHGQLSQSTRLSSLN 355
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G L+ATD RG+D V
Sbjct: 356 QFKSGNRSILVATDVAS---------------------------------RGLDIPTVDC 382
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
VINF++P N+ Y+HR+GRT RA +G +V+LV+ ++++ + I+ +G E
Sbjct: 383 VINFDLPTNSKDYIHRVGRTARAGRSGKAVTLVTQYDVELLQRIEGVIGKKMEE 436
>gi|320159208|ref|YP_004191586.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
gi|319934520|gb|ADV89383.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
Length = 398
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 141/291 (48%), Gaps = 45/291 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+ AL DI++ATPG + Q + + +++LVLDEAD +L G+ DD+ +
Sbjct: 117 KQALIEGLDILVATPGRLLDMYG----QRAVYFEEIEMLVLDEADRMLDMGFIDDINKIL 172
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P Q LL SAT S+ V L K +HNP+ E+ ++ N++Q WI +
Sbjct: 173 DRLPENIQHLLFSATLSNKVRDLAKSAIHNPF-----EISIAANQASKSNIEQ-WIITVD 226
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+D+ +L+ L E + LIF T A +L LEK GI + ++ Q R +L
Sbjct: 227 KDQKSALLSHLIKENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLL 286
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 266
E+F AG YL++T GV RGID + +
Sbjct: 287 EDFKAGKIKYLVST----------------------------------GVAARGIDIEAL 312
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+N+++P A YVHRIGRTGRA G ++SLVS D K I+S +G
Sbjct: 313 PRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCMIESRLG 363
>gi|380013608|ref|XP_003690844.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Apis
florea]
Length = 452
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 142/292 (48%), Gaps = 54/292 (18%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P I+IATPG + L +K FS SLK LV+DEAD +L+ +E ++ + V
Sbjct: 133 LAKKPHILIATPGRLVDHLEN----TKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRV 188
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK-----NVQQFWIS 144
IPR + LL SAT + V KL++ L NP VK EV K +QQ++I
Sbjct: 189 IPRERKTLLFSATMTKKVQKLQRASLRNP----------VKVEVSTKYQTVEKLQQYYIF 238
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
+ K +Y++ +L EL +IF T + R L L G + L+ ++ QN R+
Sbjct: 239 IPVKFKDVYLVHILN-ELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRI 297
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
L +F A LI+TD RG+D
Sbjct: 298 AALTKFKAKNRSILISTDVAS---------------------------------RGLDIP 324
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+V VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++++ I+ +
Sbjct: 325 HVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLI 376
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 135/277 (48%), Gaps = 43/277 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ D++ L+LDEAD +L+ G+ +D++ + A
Sbjct: 116 ALKNRPQIIVGTPGRLLDHINRRTLKL----DNVNTLILDEADEMLNMGFIEDIQTIMAS 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + ++ + + P I+ + E+ +N++QF++ ER+
Sbjct: 172 VPDTRQTLLFSATMPDAIRRIAEKFMKTPEIVKIK-----SKEMTVENIEQFYVKSVERE 226
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K ++ LL ++ + A++F T L L G + ++ +L Q R+ +L++
Sbjct: 227 KFDFLSRLLNVQQ-PELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQ 285
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F AG D L+ATD RG+D V V
Sbjct: 286 FKAGKIDILVATDVA---------------------------------ARGLDISGVSHV 312
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
NF++PQ+ YVHRIGRTGRA G +V+ V+P EM
Sbjct: 313 YNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREM 349
>gi|212557425|gb|ACJ29879.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
piezotolerans WP3]
Length = 447
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 151/315 (47%), Gaps = 44/315 (13%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+ L Q K ++ +D ALA P V+ATPG + L Q + L
Sbjct: 93 LRLLVANTQFKATKILGGENFNDQAKALARDPHFVVATPGRLADHLK----QHHLHLNGL 148
Query: 64 KILVLDEADLLLSYGYEDDLKALS-AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYIL 121
++L+ DEAD +L G+ + LK ++ A + Q L+ SAT DVD++ +L P +
Sbjct: 149 ELLIFDEADRMLDLGFAEQLKQINNAADHKRRQTLMFSATLDHGDVDEIAAELLKTPEHV 208
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
+ G+++ K++ Q C D +L+ + + QK+ +IFT T RL
Sbjct: 209 AIG-AGNLEH----KDITQRIFLCDHLDHKEALLSRILKDEQQKQIIIFTATRQDTDRLA 263
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
L G K+A L+ EL Q++R I++EF+ GL L+ TD V S
Sbjct: 264 KKLADDGFKTASLSGELKQSARNQIMDEFSRGLQQILVTTD---------------VAS- 307
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D NV VINF+MP+ A YVHRIGRTGRA G +VSLV
Sbjct: 308 -----------------RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAVSLV 350
Query: 302 SPDEMKIFEEIKSFV 316
P + F ++++F+
Sbjct: 351 GPKDWVNFTQVQTFL 365
>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
Length = 486
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 148/295 (50%), Gaps = 45/295 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P +V+ATPG + L ++K FS SLK LVLDEAD LL + + +
Sbjct: 175 ALGKKPHVVVATPGRLLDHLE----KTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILK 230
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSE 147
IPR L SAT SS V+ L++ L +P +++ G +V+ +Q F +I +
Sbjct: 231 FIPRERHTYLFSATMSSKVESLQRASLKDPARVSVQSNG---YQVVSTLLQNFLFIPHAL 287
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+D +Y + L+ + + ++F T+ RL + L G + L+ +L Q++RL L
Sbjct: 288 KD--VYCVHLIN-SFIGQTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGAL 344
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG D L+ATD RG+D NV
Sbjct: 345 NKFRAGSRDILVATDVA---------------------------------ARGLDIPNVD 371
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
VIN+++PQ++ Y+HR+GRT RA +G ++SLV+ +++I+ I++ +G +E
Sbjct: 372 VVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIEASMGKKLDE 426
>gi|333986675|ref|YP_004519282.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
sp. SWAN-1]
gi|333824819|gb|AEG17481.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. SWAN-1]
Length = 530
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 144/310 (46%), Gaps = 43/310 (13%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKI 65
L K ++KV+ + P AL ++I TPG + + G L+ DS+KI
Sbjct: 95 LSKYMSKIKVLPIYGGQPIERQIKALKKGVQVIIGTPGRVMDHMRRGTLKM----DSVKI 150
Query: 66 LVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125
+VLDEAD +L G+ DD++ + +P Q LL SAT S D+ L + +NP L +
Sbjct: 151 MVLDEADEMLDMGFRDDIEIVLRDMPSERQTLLFSATMSRDILNLTRKYQNNPEFLKV-- 208
Query: 126 VGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 185
V E+ +QQ + E+ KL + LL + K +L+F NT +L L+
Sbjct: 209 ---VHQELTVPEIQQIYFEVKEKMKLELLSRLLDIHNF-KLSLVFCNTKRRVDKLVTHLQ 264
Query: 186 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK 245
G + L+ ++ Q+ R ++ +F G + L+ATD
Sbjct: 265 IRGYAADGLHGDMTQSQRDRVMAKFRNGKIEVLVATDVA--------------------- 303
Query: 246 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RGID +NV V N+++P + YVHRIGRTGRA TG + + VS E
Sbjct: 304 ------------ARGIDVENVEAVFNYDVPNDDEYYVHRIGRTGRAGKTGMAFTFVSGKE 351
Query: 306 MKIFEEIKSF 315
+ +I+ +
Sbjct: 352 IYQLRDIQKY 361
>gi|426371741|ref|XP_004052800.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Gorilla gorilla gorilla]
Length = 455
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|16549139|dbj|BAB70762.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|333920975|ref|YP_004494556.1| putative ATP-dependent RNA helicase [Amycolicicoccus subflavus
DQS3-9A1]
gi|333483196|gb|AEF41756.1| Putative ATP-dependent RNA helicase [Amycolicicoccus subflavus
DQS3-9A1]
Length = 587
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 127/281 (45%), Gaps = 43/281 (15%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
I++ TPG + L+ G L L+ LVLDEAD +L G+++D++ + A+ P G Q
Sbjct: 131 IIVGTPGRVIDHLTRGTLDISQ----LRFLVLDEADEMLKMGFQEDVERILAMAPEGRQS 186
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILT 156
L SAT + ++ + L +P +T+ D + Q W+ S KL +
Sbjct: 187 ALFSATMPRAIREISRTYLRDPAEVTIKSTTKTSD-----TINQRWVLVSHARKLDALTR 241
Query: 157 LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
L++E LIF T L L G S LN ++PQ R I+ E AG D
Sbjct: 242 FLEVEPFD-AMLIFVRTKQATDELAEKLRARGFASTSLNGDIPQPVRERIVGELRAGKID 300
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
L+ATD V RG+D + + V+NF++P
Sbjct: 301 ILVATDV---------------------------------VARGLDVERISHVVNFDIPT 327
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+ YVHRIGRTGRA +G ++ V+P E ++ I+ G
Sbjct: 328 DNDSYVHRIGRTGRAGRSGEALLFVTPRERRLLRSIERSTG 368
>gi|171913474|ref|ZP_02928944.1| DEAD/DEAH box helicase-like protein [Verrucomicrobium spinosum DSM
4136]
Length = 452
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 43/308 (13%)
Query: 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 69
+ LKV + + AL D+VIATPG + + Q +SL+ LVLD
Sbjct: 100 HLPLKVAMIFGGVGERPQIEALRAGTDLVIATPGRLIDLMG----QRHGNFNSLEFLVLD 155
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD +L G+ +K + +P+ Q LL SAT S +++ L L++P + ++G
Sbjct: 156 EADRMLDMGFLPSIKRIVKALPKKRQTLLFSATLSKEIEALTHEFLNHPKTV---QIGKR 212
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+ ++V QF + K ++ LLK + L+F+ A R+ L+++GI
Sbjct: 213 SNPA--ESVTQFVYEVPKHLKPALLVHLLK-DPAFNMVLVFSRMKHGADRIARHLDRYGI 269
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
K+ L++ QN RL L +F +G L+ATD
Sbjct: 270 KTVTLHSNRTQNQRLRALADFKSGAARVLVATDIA------------------------- 304
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RGID + V+N++ P +A YVHRIGRTGRA+ G ++S +SP++
Sbjct: 305 --------ARGIDVDGISHVVNYDFPMHAEDYVHRIGRTGRAHAVGDAISFISPEDHGPL 356
Query: 310 EEIKSFVG 317
+ ++ F+G
Sbjct: 357 KSLERFIG 364
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|149192500|ref|ZP_01870684.1| RhlE [Vibrio shilonii AK1]
gi|148833665|gb|EDL50718.1| RhlE [Vibrio shilonii AK1]
Length = 397
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 137/291 (47%), Gaps = 45/291 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+ AL DIV+ATPG + Q D ++ LVLDEAD +L G+ + + +
Sbjct: 117 KQALIDGVDIVVATPGRLIDLYG----QRAIHFDEVETLVLDEADKMLDMGFIEAINKII 172
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
A +P Q LL SAT S+ V L K + NP E+ K N++Q WI +
Sbjct: 173 ARVPEDAQSLLFSATLSNPVRDLAKSAIDNP-----EEIAITKHSASKSNIKQ-WIVTVD 226
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+D +L+ L + K+ALIF T A +L LEK GI + ++ Q R ++
Sbjct: 227 KDMKSSLLSHLLQQNQWKQALIFIETKHGAAKLVSQLEKRGIAAEAFHSGRNQKVRQQLI 286
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 266
E F AG YL+AT GV RGID +N+
Sbjct: 287 ESFKAGEIQYLVAT----------------------------------GVAARGIDIENL 312
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P A YVHRIGRTGRA G ++SLVS D K I+S +G
Sbjct: 313 PVVINYDLPYPADEYVHRIGRTGRADAAGEALSLVSKDNFKNLCMIESRLG 363
>gi|66550432|ref|XP_395653.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Apis mellifera]
Length = 452
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 142/292 (48%), Gaps = 54/292 (18%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P I+IATPG + L +K FS SLK LV+DEAD +L+ +E ++ + V
Sbjct: 133 LAKKPHILIATPGRLVDHLEN----TKGFSLRSLKFLVMDEADRILNMDFEVEVDKILRV 188
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK-----NVQQFWIS 144
IPR + LL SAT + V KL++ L NP VK EV K +QQ++I
Sbjct: 189 IPRERKTLLFSATMTKKVQKLQRASLRNP----------VKVEVSTKYQTVEKLQQYYIF 238
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
+ K +Y++ +L EL +IF T + R L L G + L+ ++ QN R+
Sbjct: 239 IPVKFKDVYLVHILN-ELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRI 297
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
L +F A LI+TD RG+D
Sbjct: 298 AALTKFKAKNRSILISTDVAS---------------------------------RGLDIP 324
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+V VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++++ I+ +
Sbjct: 325 HVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLI 376
>gi|291392610|ref|XP_002712705.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Oryctolagus cuniculus]
Length = 455
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|91775307|ref|YP_545063.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91775451|ref|YP_545207.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709294|gb|ABE49222.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709438|gb|ABE49366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|167042456|gb|ABZ07182.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 515
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 140/283 (49%), Gaps = 43/283 (15%)
Query: 34 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
P DI++ATPG + L ++ S +++ILVLDEAD +L G+ D+K + A++P+
Sbjct: 135 PLDILVATPG---RLLDHAAQKTIDLS-AIEILVLDEADRMLDMGFIRDIKRVLALLPKK 190
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLY 153
Q LL SAT S ++ +L +LHNP + + + E++ + V +RD + +
Sbjct: 191 RQNLLFSATFSDEIKELADGLLHNPGFVEVARR-NTASELVEQAV-HLVSQGHKRDLVAH 248
Query: 154 ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
++ K+ LIFT T A RL L K GI +A ++ Q++R L EF G
Sbjct: 249 LIRHHDW----KQVLIFTRTKHGANRLAEKLSKDGIAAAAIHGNKSQSARTKALAEFKNG 304
Query: 214 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 273
L+ATD RG+D + V+NFE
Sbjct: 305 TLPVLVATDI---------------------------------AARGLDIDQLPQVVNFE 331
Query: 274 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+P YVHRIGRTGRA +GA+VSLV +E+K+ + I+ +
Sbjct: 332 LPNVPEDYVHRIGRTGRAGCSGAAVSLVDGEEIKLLKGIERLI 374
>gi|20149629|ref|NP_057439.2| probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
gi|52782792|sp|Q9H0S4.1|DDX47_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|12052856|emb|CAB66601.1| hypothetical protein [Homo sapiens]
gi|45786091|gb|AAH68009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Homo sapiens]
gi|117645464|emb|CAL38198.1| hypothetical protein [synthetic construct]
gi|119616683|gb|EAW96277.1| hCG2044052 [Homo sapiens]
gi|119616687|gb|EAW96281.1| hCG27698, isoform CRA_a [Homo sapiens]
gi|193785403|dbj|BAG54556.1| unnamed protein product [Homo sapiens]
Length = 455
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|402221947|gb|EJU02015.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 809
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 140/287 (48%), Gaps = 45/287 (15%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
A L PD+VIATPG + L S SFS D L +L++DEAD +L G+ +L +
Sbjct: 337 AELRTRPDVVIATPGRLIDHLRN----SPSFSLDMLDVLIMDEADRMLEEGFAAELGEII 392
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+ P+ Q +L SAT + VD+L ++ L+ P L + D + Q+F
Sbjct: 393 SACPKQRQTMLFSATMTDSVDELIRMGLNKPVRLFV----DPRKSTASGLTQEFVRVRDN 448
Query: 148 R--DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
R D+ ++TL K + + +IF + A ++++ G+K+ L+ L Q RL
Sbjct: 449 REDDRPALLMTLCK-RTFRTRCIIFFRSKAFAHQMRIVFGLLGMKAGELHGNLTQEQRLR 507
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
L++F G D+L+ATD L S RG+D +
Sbjct: 508 ALQQFKDGDVDFLLATD----------------------------LAS-----RGLDIRG 534
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
+ TVIN++MP A Y+HR+GRT RA + G SV+LV + K+ + +
Sbjct: 535 IETVINYDMPGQIAQYLHRVGRTARAGSKGRSVTLVGEADRKMLKAV 581
>gi|291277508|ref|YP_003517280.1| DEAD box helicase [Helicobacter mustelae 12198]
gi|290964702|emb|CBG40557.1| DEAD box helicase family protein [Helicobacter mustelae 12198]
Length = 513
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 42/287 (14%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
LA P I++ATPG + L +G L + F+ + +VLDE+D +L G+ DD++ + +
Sbjct: 131 LAKNPQIMVATPGRLLDHLKSGRLDN--FTP--RFVVLDESDEMLDMGFLDDIEEIFNYL 186
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 150
P Q LL SAT + KL + ILHNP + + ++ + +V Q++ E ++
Sbjct: 187 PNNIQVLLFSATMPEAIKKLAQRILHNPIHIKITPTANMTN----LDVTQYYCVIGEGER 242
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ +L E + K++IFT T A L FLE G K+ L+ ++ Q R + +F
Sbjct: 243 QEALMRILDTENIY-KSIIFTRTKKEADGLYNFLEARGYKAGTLHGDMEQRDRRAAILDF 301
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+ L+ATD RG+D +V V
Sbjct: 302 KKCHYKILVATDVAS---------------------------------RGLDISDVSHVF 328
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
N+ +P N+ YVHRIGRTGRA G +++ V+P E K ++I+ VG
Sbjct: 329 NYHIPTNSEVYVHRIGRTGRAGKKGKAITFVTPLEFKDLKKIQEDVG 375
>gi|421498297|ref|ZP_15945417.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
gi|407182701|gb|EKE56638.1| ATP-dependent RNA helicase RhlE [Aeromonas media WS]
Length = 417
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 139/286 (48%), Gaps = 53/286 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + L G L+ S S LV DEAD +L G+ D++KAL IP Q
Sbjct: 129 DLLIATPGRLLDHLRQGALRLGSLSH----LVFDEADRMLDMGFMDEIKALLKQIPADRQ 184
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT ++ L K++L +P ++ EV P+N V+Q + K
Sbjct: 185 TLLFSATCDDNLFALSKVLLRDPELI----------EVAPRNTTAAEVEQRVYAVDGDRK 234
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
L + +L ++ ALIF+ T A +L L K GI + + +L Q++R +L EF
Sbjct: 235 LALVEHMLTVK-GWAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQSAREKVLLEF 293
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
AG L+ATD RG+D +++ VI
Sbjct: 294 RAGTLQALVATDVA---------------------------------ARGLDISDLNYVI 320
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 321 NLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|296210930|ref|XP_002752172.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Callithrix jacchus]
Length = 455
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|39644716|gb|AAH09379.2| DDX47 protein, partial [Homo sapiens]
Length = 450
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 133 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 188
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 189 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 243
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 244 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 302
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 303 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 329
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 330 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 378
>gi|117621455|ref|YP_855288.1| ATP-dependent RNA helicase RhlE [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562862|gb|ABK39810.1| putative ATP-dependent RNA helicase RhlE [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 416
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 139/292 (47%), Gaps = 53/292 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL DI+IATPG + L G L + L LV DEAD +L G+ D++K L
Sbjct: 123 ALKAGVDILIATPGRLLDHLRQGALSLAA----LHHLVFDEADRMLDMGFMDEIKELLKQ 178
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWIS 144
IP Q LL SAT ++ L K++LH+P ++ EV P+N V+Q +
Sbjct: 179 IPADRQTLLFSATCDDNLFALSKVLLHDPELI----------EVAPRNTTAAEVEQRVYT 228
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
KL + +L ++ ALIF+ T A +L L K GI + + +L Q +R
Sbjct: 229 VDGDRKLALVEHMLNVK-GWAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGARE 287
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
+L EF AG L+ATD RG+D
Sbjct: 288 KVLLEFRAGTLQALVATDVA---------------------------------ARGLDIS 314
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 315 DLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|417990847|ref|ZP_12631309.1| cold-shock DEAD-box protein A [Lactobacillus casei A2-362]
gi|410533506|gb|EKQ08184.1| cold-shock DEAD-box protein A [Lactobacillus casei A2-362]
Length = 502
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 145/308 (47%), Gaps = 46/308 (14%)
Query: 12 QLKVVQLTSSMPASDLRAA---LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68
Q K +++ + +D+R L+ P IV+ TPG + + L+ ++ LK+LVL
Sbjct: 94 QDKKIKVQAVYGGADIRRQIRQLSEHPQIVVGTPGRILDHIGRHTLKLQN----LKVLVL 149
Query: 69 DEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD 128
DEAD +L G+ DD++ + +P Q LL SAT + + +L +H P + +
Sbjct: 150 DEADEMLDMGFIDDIEKIVEQMPTARQTLLFSATIPASIMRLTNKFMHEPVTVKIK---- 205
Query: 129 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
E+ V+Q+++ + +K + L ++ ALIF T L L+ G
Sbjct: 206 -AKELTADTVEQYYVRAKDYEKFDVMTRLFDVQ-DPDLALIFGRTKRRVDELTRGLKARG 263
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
++ ++ +L Q R+ +L +F +G D+L+ATD
Sbjct: 264 YRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATD-------------------------- 297
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D V V N+++PQ+ YVHRIGRTGRA + G SV+ V+P+E++
Sbjct: 298 -------VAARGLDISGVTHVYNYDIPQDPDPYVHRIGRTGRAGHKGVSVTFVTPNEIEY 350
Query: 309 FEEIKSFV 316
I+
Sbjct: 351 LHTIEDLT 358
>gi|423205411|ref|ZP_17191967.1| hypothetical protein HMPREF1168_01602 [Aeromonas veronii AMC34]
gi|404624206|gb|EKB21046.1| hypothetical protein HMPREF1168_01602 [Aeromonas veronii AMC34]
Length = 416
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 141/293 (48%), Gaps = 53/293 (18%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
AAL D++IATPG + L G L + S LV DEAD +L G+ D++KAL
Sbjct: 122 AALQAGVDLLIATPGRLLDHLRQGALSLEHLSH----LVFDEADRMLDMGFMDEIKALLK 177
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWI 143
IP Q LL SAT ++ L K++L +P ++ EV P+N V+Q
Sbjct: 178 QIPADRQTLLFSATCDDNLFALSKVLLRDPELI----------EVAPRNTTAAEVEQRVY 227
Query: 144 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
+ KL + +LK++ ALIF+ T A +L L K I + + +L Q++R
Sbjct: 228 TVDSDRKLALVEHMLKVK-GWAPALIFSRTRQGADKLAQQLGKADINALAFHGDLSQSAR 286
Query: 204 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 263
+L EF AG L+ATD RG+D
Sbjct: 287 EKVLLEFRAGTLQALVATDVA---------------------------------ARGLDI 313
Query: 264 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 314 TDLNYVINLEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|389818136|ref|ZP_10208577.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
gi|388464068|gb|EIM06404.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
Length = 507
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 135/277 (48%), Gaps = 43/277 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ D++ L+LDEAD +L+ G+ +D++ + A
Sbjct: 116 ALKNRPQIIVGTPGRLLDHINRRTLKL----DNVNTLILDEADEMLNMGFIEDIQTIMAS 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + ++ + + P I+ + E+ +N++QF++ ER+
Sbjct: 172 VPDTRQTLLFSATMPDAIRRIAEKFMKTPEIVKIK-----SKEMTVENIEQFYVKSVERE 226
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K ++ LL ++ + A++F T L L G + ++ +L Q R+ +L++
Sbjct: 227 KFDFLSRLLNVQQ-PELAIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQ 285
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F AG D L+ATD RG+D V V
Sbjct: 286 FKAGKIDILVATDVA---------------------------------ARGLDISGVSHV 312
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
NF++PQ+ YVHRIGRTGRA G +V+ V+P EM
Sbjct: 313 YNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREM 349
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|350537559|ref|NP_001233477.1| probable ATP-dependent RNA helicase DDX47 [Pan troglodytes]
gi|343958142|dbj|BAK62926.1| apolipoprotein-L domain-containing protein 1 [Pan troglodytes]
gi|410264252|gb|JAA20092.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410305384|gb|JAA31292.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
gi|410329313|gb|JAA33603.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Pan troglodytes]
Length = 455
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 146/289 (50%), Gaps = 44/289 (15%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALS 87
AAL +IVIATPG + +Q K+ + S +ILV+DEAD +L G+ DL+ +
Sbjct: 137 AALRAGVEIVIATPGRL-----LDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRII 191
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
++P+ Q L+ SAT S ++ KL L NP + + D V + V + ++
Sbjct: 192 NLLPKKRQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVT-QVVYKVDSDDAK 250
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
RD + +++ +L K+ L+F+NT A RL LEK G+K++ ++ + Q+ R+ L
Sbjct: 251 RDIVAHLIRGRQL----KQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQSERMAAL 306
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
E F G D L+ATD RG+D ++
Sbjct: 307 EAFKGGEIDVLVATD---------------------------------VAARGLDISDLP 333
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
VIN+++P NA YVHRIGRTGRA +G ++SL + + ++ +I+ +
Sbjct: 334 CVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFTTKDERLLLDIEKLI 382
>gi|121700981|ref|XP_001268755.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
NRRL 1]
gi|142982514|sp|A1CNV8.1|DRS1_ASPCL RecName: Full=ATP-dependent RNA helicase drs1
gi|119396898|gb|EAW07329.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
NRRL 1]
Length = 826
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 135/277 (48%), Gaps = 45/277 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF+ D+L+ILVLDEAD +L G+ D+L + IP+
Sbjct: 428 PDVIIATPGRFIDHMRN----SPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 483
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDKL 151
Q +L SAT + VDKL ++ L+ P L + D K Q+F E +L
Sbjct: 484 RQTMLFSATMTDSVDKLIRVGLNRPVRLMV----DSKKNTSMNLTQEFVRLRPGREGKRL 539
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+L L E+ + ++F A R+++ G+K+A L+ + Q R+ +E F
Sbjct: 540 GYLLYLCS-EIFTGRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFR 598
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G +L+ATD L S RG+D K V TVIN
Sbjct: 599 EGKVAFLLATD----------------------------LAS-----RGLDIKGVETVIN 625
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
+E PQ+ Y+HR+GRT RA +G + ++ + + K+
Sbjct: 626 YEAPQSHEIYLHRVGRTARAGRSGRACTIAADPDRKV 662
>gi|397474910|ref|XP_003808899.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pan paniscus]
Length = 455
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|392965153|ref|ZP_10330573.1| ATP-dependent RNA helicase RhlE [Fibrisoma limi BUZ 3]
gi|387846536|emb|CCH52619.1| ATP-dependent RNA helicase RhlE [Fibrisoma limi BUZ 3]
Length = 411
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 135/282 (47%), Gaps = 45/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + +S G L+ D ++IL+LDEAD +L G+ D++ L +PR Q
Sbjct: 126 DILVATPGRLFDLVSQGHLKL----DRVEILILDEADHMLDLGFLKDIQDLVKRLPRKRQ 181
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTL-PEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
L SAT + KL ++HNP + + PE + +N++ DK ++
Sbjct: 182 TLFFSATIDETIKKLAYSLVHNPIRIQISPE------NRVARNIEHSVAFVEMDDKRFFL 235
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
++K E K L+F T A R+ L + G+ S ++ + Q SR+ +L +F G
Sbjct: 236 ERIVK-EHPDNKILVFVRTKVRAERVASALHRMGLSSQTIHGDKEQASRVQVLNQFRKGD 294
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
LIATD + RGID NV V+N+++
Sbjct: 295 VKVLIATDVS---------------------------------ARGIDIPNVDYVVNYDL 321
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
P+ YVHR+GRTGR G +VS S +E + EI++++
Sbjct: 322 PEQPENYVHRVGRTGRGTQKGTAVSFCSSEEKPLLAEIETYL 363
>gi|328853252|gb|EGG02392.1| hypothetical protein MELLADRAFT_75483 [Melampsora larici-populina
98AG31]
Length = 486
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 150/313 (47%), Gaps = 44/313 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ +K V + M AL+ P +++ATPG + L +K FS +L+ L++D
Sbjct: 154 IGVKTVVIVGGMDMMSQAIALSKRPHVIVATPGRLHDHLE----HTKGFSLRNLQFLIMD 209
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL + + + VIP+ + L SAT ++ V KL++ L+NP + + D
Sbjct: 210 EADRLLDMDFGPVIDKILKVIPKERKTYLFSATMTTKVAKLQRASLNNPVKVEVSAKYDT 269
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
++ Q ++ + K Y++ L EL K ++FT T+ A RL L L G
Sbjct: 270 VSALV-----QTYLFLPFKHKDTYLVYLAN-ELSGKSLIVFTRTVHDASRLSLILRTLGF 323
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ L+ +L Q++RL L +F +G L+ATD
Sbjct: 324 PAVPLHGQLSQSARLGALNKFKSGDQSLLVATDVAS------------------------ 359
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RG+D V VINF++P N+ Y+HR+GRT RA +G S++LV+ ++++
Sbjct: 360 ---------RGLDIPAVDCVINFDLPTNSKDYIHRVGRTARAGRSGKSITLVTQYDVELL 410
Query: 310 EEIKSFVGDDENE 322
+ I+ +G NE
Sbjct: 411 QRIEGVIGKKMNE 423
>gi|297691246|ref|XP_002823001.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Pongo abelii]
Length = 455
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|117646246|emb|CAL38590.1| hypothetical protein [synthetic construct]
gi|208967637|dbj|BAG72464.1| apolipoprotein L domain containing 1 [synthetic construct]
Length = 455
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|395334307|gb|EJF66683.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 171/373 (45%), Gaps = 58/373 (15%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALS 87
A L PD+VIATPG L + S +F+ D+L ILVLDEAD +L G+ D+L +
Sbjct: 305 ANLRTRPDVVIATPGR----LIDHIRNSPTFTLDALDILVLDEADRMLEDGFADELTEII 360
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCS 146
P Q +L SAT + VD+L ++ L+ P L + D K +Q+F +
Sbjct: 361 KSCPTSRQTMLFSATMTDSVDELVRMSLNKPVRLFV----DPKRATARGLLQEFVRVRAG 416
Query: 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
+ + +L L + + +IF + +A ++++ +K L+ +L Q RL
Sbjct: 417 KEAERSALLVALCKRTFKSRVIIFFRSKKLAHQMRIVFRLLDMKCDELHGDLSQEQRLKA 476
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L++F G DYL+ATD L S RG+D K +
Sbjct: 477 LQQFRDGHVDYLMATD----------------------------LAS-----RGLDIKGI 503
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNI 326
TVIN++MP A Y+HR+GRT RA G SV+LV + K+ + E++ +
Sbjct: 504 ETVINYDMPGQLAQYLHRVGRTARAGKKGRSVTLVGEADRKMLKAAIKHSSGGEDQIRHR 563
Query: 327 IAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDL 386
P Q V + + + + +++I E + LR +A E+ K
Sbjct: 564 QVP-----QEVVSKWAQKLDSLKQEISEILQEEKEEKQLR---------QAEMELK-KGQ 608
Query: 387 DLLKHDKDLSKKP 399
++++H+ ++ +P
Sbjct: 609 NMIEHEAEIFSRP 621
>gi|254372784|ref|ZP_04988273.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570511|gb|EDN36165.1| ATP-dependent RNA helicase RhlE [Francisella novicida GA99-3549]
Length = 442
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 140/282 (49%), Gaps = 43/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG + S QS DSL VLDEAD +L G+ +DLK + ++P+ Q
Sbjct: 125 EILIATPGRLLDLYS----QSAVKFDSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT SS++ L L+NP ++ DV + + K Q+ + + + +K+ ++
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDKSNKINALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L +F +
Sbjct: 236 SLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RGID + VIN ++P
Sbjct: 295 NVLVATDIA---------------------------------ARGIDIAQLPCVINLDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 322 NVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|374329697|ref|YP_005079881.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359342485|gb|AEV35859.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 483
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 140/295 (47%), Gaps = 44/295 (14%)
Query: 23 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 82
P LRA G DIVIATPG + +STG ++ D+ +VLDEAD +L G+
Sbjct: 115 PGPQLRALSKGL-DIVIATPGRLEDHMSTGGIKL----DATTTVVLDEADQMLDLGFAPA 169
Query: 83 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 142
++ + +P+ Q +L+SAT + L K L NP+ +++ V E I ++V +F
Sbjct: 170 IRRILGKLPKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAPV-SRPIEKIDQSV-RFL 227
Query: 143 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 202
S S+R LL IL+ +E +A++FT T A R+ LEK G+ SA ++ Q +
Sbjct: 228 NSSSKRAALLDILSEDDIE----RAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRN 283
Query: 203 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 262
R L+ F G L+ATD RGID
Sbjct: 284 REKSLDGFKNGRIKILVATDI---------------------------------AARGID 310
Query: 263 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V V+N+E+P YVHRIGRT RA +G +VSL E +I+ +G
Sbjct: 311 IDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLRDIERLIG 365
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 134/281 (47%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q +++LVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 145 EILIATPGR----LLDHVQQKTVNLGQVQMLVLDEADRMLDMGFLPDLQRILNLLPKERQ 200
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV+Q E DK +
Sbjct: 201 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTNANVRQIVYEVHESDKSGAVA 255
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ E K+ ++F N+ A RL LEK GI + ++ + Q+ R+ L+ F G
Sbjct: 256 QLIR-ERELKQVIVFCNSKIGASRLARVLEKDGIVATAIHGDRSQSERMQALDAFKRGEI 314
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 315 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 341
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL S +E K +I+ +
Sbjct: 342 FNAEDYVHRIGRTGRAGASGDALSLCSANERKQLADIEKLI 382
>gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana]
gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana]
Length = 456
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 164/360 (45%), Gaps = 55/360 (15%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ L+ L + AL P +++ATPG + +S +K FS SLK LVLD
Sbjct: 116 ISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMS----DTKGFSLKSLKYLVLD 171
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL+ +E L + IP + L SAT + V KL++ L NP + E
Sbjct: 172 EADRLLNEDFEKSLNQILEEIPLERETFLFSATMTKKVRKLQRACLRNPVKI---EAASK 228
Query: 130 KDEVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
V Q +++ +D L+YIL+ E+ + ++IFT T D L L L G
Sbjct: 229 YSTVDTLKQQYRFVAAKYKDCYLVYILS----EMPESTSMIFTRTCDGTRFLALVLRSLG 284
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
++ ++ ++ Q+ RL L +F AG + L+ TD
Sbjct: 285 FRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS----------------------- 321
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D +V VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++
Sbjct: 322 ----------RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEW 371
Query: 309 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
+ +I+ +G + +P + L AE AK ++ + ++ES + R E
Sbjct: 372 YIQIEKLIGKK-------LPEYPAEEDEVLSLLERVAE--AKKLSAMNMKESGGRKRRGE 422
>gi|417401266|gb|JAA47524.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 455
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|346978687|gb|EGY22139.1| ATP-dependent RNA helicase DRS1 [Verticillium dahliae VdLs.17]
Length = 748
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 145/299 (48%), Gaps = 49/299 (16%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
L V L+ M ++LR PD++IATPG + S SF+ D+++ILVLDEA
Sbjct: 323 LAVGGLSLKMQEAELRLR----PDVIIATPGRFIDHMRN----SASFAVDAVEILVLDEA 374
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D+L + +P+ Q +L SAT +S VD+L ++ ++ P + + D +
Sbjct: 375 DRMLEDGFADELNEILTSMPKSRQTMLFSATMTSSVDRLIRVGMNTPARVMV----DSQK 430
Query: 132 EVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+ + Q+F E ++ Y+L + K L ++ +IF A R ++ G+
Sbjct: 431 KTVTTLTQEFIRLRPGRESKRMGYLLFICKT-LYTERVIIFFRQKKDAHRARIIFGLLGL 489
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
A L+ + Q R+ +E+F G YL+ATD
Sbjct: 490 SCAELHGSMNQTQRIQSVEDFRDGKVSYLLATD--------------------------- 522
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
L S RG+D K + TVIN+E PQ YVHR+GRT RA G +V+L + + K+
Sbjct: 523 -LAS-----RGLDIKGIDTVINYEAPQKLEIYVHRVGRTARAGRAGVAVTLAAEPDRKV 575
>gi|344266640|ref|XP_003405388.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Loxodonta
africana]
Length = 461
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 142/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 144 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 199
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 200 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 254
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL ++F +T + R L L G + L+ ++ Q RL L
Sbjct: 255 FKDTYLVYILN-ELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQTKRLGSLN 313
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 314 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 340
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+ +G
Sbjct: 341 VVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIG 389
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|423199692|ref|ZP_17186275.1| hypothetical protein HMPREF1171_04307 [Aeromonas hydrophila SSU]
gi|404628948|gb|EKB25713.1| hypothetical protein HMPREF1171_04307 [Aeromonas hydrophila SSU]
Length = 415
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 140/292 (47%), Gaps = 53/292 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL D++IATPG + L G L + L+ LV DEAD +L G+ D++KAL
Sbjct: 123 ALKAGVDLLIATPGRLLDHLRQGALSLAA----LRHLVFDEADRMLDMGFMDEIKALLKQ 178
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWIS 144
IP Q LL SAT ++ L K++L +P ++ EV P+N V+Q +
Sbjct: 179 IPADRQTLLFSATCDDNLFALSKVLLRDPALI----------EVAPRNTTAAEVEQRVYT 228
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
KL + +L ++ ALIF+ T A +L L K GI + + +L Q +R
Sbjct: 229 VDSDRKLALVEHMLNVK-GWAPALIFSRTRQGADKLAQQLGKAGINALAFHGDLSQGARE 287
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
+L EF AG L+ATD RG+D
Sbjct: 288 KVLLEFRAGTLQALVATDVA---------------------------------ARGLDIT 314
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+++ VIN E P A YVHRIGRTGRA N G +++L SP++ + E++++ +
Sbjct: 315 DLNYVINMEFPFVAEDYVHRIGRTGRAGNKGLAITLFSPEDAPLLEKVEAVL 366
>gi|375133072|ref|YP_005049480.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii NCTC 11218]
gi|315182247|gb|ADT89160.1| ATP-dependent RNA helicase RhlE [Vibrio furnissii NCTC 11218]
Length = 397
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 45/283 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + Q + + ++I+VLDEAD +L G+ D + + +PR Q
Sbjct: 125 DVLVATPGRLLDMYG----QRAVYFEEVEIVVLDEADRMLDMGFIDSINKIIDRLPRDAQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S V L K +++P+ E+ ++ N++Q W+ ++DK +L
Sbjct: 181 YLLFSATLSHKVRDLAKTAVNDPF-----EISIAANQASKSNIEQ-WLITVDKDKKSALL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ L E +ALIF T A +L LEK GI + ++ Q R+ +LE+F AG
Sbjct: 235 SHLITENNWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVHTVINFEM 274
Y+IAT GV RGID + V+N+++
Sbjct: 295 KYMIAT----------------------------------GVGARGIDIHELSRVVNYDL 320
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 321 PFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLCMIESRLG 363
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|3775997|emb|CAA09201.1| RNA helicase [Arabidopsis thaliana]
Length = 376
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 164/360 (45%), Gaps = 55/360 (15%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ L+ L + AL P +++ATPG + +S +K FS SLK LVLD
Sbjct: 36 ISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMS----DTKGFSLKSLKYLVLD 91
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL+ +E L + IP + L SAT + V KL++ L NP + E
Sbjct: 92 EADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKI---EAASK 148
Query: 130 KDEVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
V Q +++ +D L+YIL+ E+ + ++IFT T D L L L G
Sbjct: 149 YSTVDTLKQQYRFVAAKYKDCYLVYILS----EMPESTSMIFTRTCDGTRFLALVLRSLG 204
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
++ ++ ++ Q+ RL L +F AG + L+ TD
Sbjct: 205 FRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS----------------------- 241
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D +V VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++
Sbjct: 242 ----------RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEW 291
Query: 309 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
+ +I+ +G + +P + L AE AK ++ + ++ES + R E
Sbjct: 292 YIQIEKLIGKK-------LPEYPAEEDEVLSLLERVAE--AKKLSAMNMKESGGRKRRGE 342
>gi|398406547|ref|XP_003854739.1| RNA-dependent ATPase [Zymoseptoria tritici IPO323]
gi|339474623|gb|EGP89715.1| hypothetical protein MYCGRDRAFT_84402 [Zymoseptoria tritici IPO323]
Length = 446
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 142/289 (49%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IV+ATPG + L +K FS LK LV+DEAD LL + L +
Sbjct: 150 ALAKKPHIVVATPGRLLDHLE----NTKGFSLRQLKYLVMDEADRLLDLDFGPILDKIFQ 205
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + +L SAT S+ ++ L + L P +++ KN+ Q +I +
Sbjct: 206 VLPRERRTMLFSATMSTKLNNLTRAALQQPVKVSISS----SSYQTVKNLMQRYIFIPHK 261
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ LL E + ++FT TI+ R+ L G + L+ ++ Q++RL L
Sbjct: 262 FKDIYLVYLLN-EFAGQTCIVFTRTINETARIAFLLRALGRSAIPLHGQMNQSARLGALN 320
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F G D L+ATD RG+D +V
Sbjct: 321 KFRGGHRDILVATDVA---------------------------------ARGLDIPSVDL 347
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ YVHR+GRT RA +G ++S+V+ +++I++ I+ +G
Sbjct: 348 VLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIYQRIEKALG 396
>gi|300727714|ref|ZP_07061100.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
bryantii B14]
gi|299775002|gb|EFI71608.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
bryantii B14]
Length = 555
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 44/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+VIATPG + +S G + S +LDEAD +L G+ DD+KA++ +P+ CQ
Sbjct: 128 DVVIATPGRLISHISLGNVDLSKVS----FFILDEADRMLDMGFADDIKAIAKELPQTCQ 183
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
++ SAT ++ L K +L NP + L + ++Q C E KL I
Sbjct: 184 TIMFSATMPEKIEDLAKTLLKNPIEIKLAVSKPA------EKIKQSAYICYETQKLGIIK 237
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ K + K+ ++F + ++ L++ I S ++++L Q R I+ +F AG
Sbjct: 238 DIFKAGDL-KRVIVFCGSKTKVKQVNSALQRKHINSGEMHSDLTQEERNDIMYKFKAGQL 296
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
D L+ATD V RGID ++ VIN+++P
Sbjct: 297 DVLVATDI---------------------------------VSRGIDIDDITMVINYDVP 323
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ YVHRIGRT RA G +++LVS ++ F++ + F+
Sbjct: 324 HDTEDYVHRIGRTARADRDGVAITLVSEEDQFYFQQTEKFL 364
>gi|157376983|ref|YP_001475583.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319357|gb|ABV38455.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 513
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 135/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + L +F + L++L+LDEAD +L G+ D+K + V+P Q
Sbjct: 147 DILVATPGRLLDLFNQRAL---NF-NQLEVLILDEADRMLDMGFIHDIKKILKVLPAKRQ 202
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT S D+ KL K +++NP E+ K V+Q+ ++ K ++
Sbjct: 203 NLMFSATFSDDIRKLAKGLVNNPV-----EISVTPRNATAKTVEQYIYQVDQKQKTAALI 257
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L+K + K+ L+F+ T A R+ LE + +A ++ Q +R L F +G
Sbjct: 258 HLIK-QNDWKQVLVFSRTKHGANRIAKNLEANDLTAAAIHGNKSQGARTKALANFKSGEV 316
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NF++P
Sbjct: 317 RVLVATDI---------------------------------AARGIDIDQLPNVVNFDLP 343
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA G +VSLVS DE K+ +I+ +
Sbjct: 344 NVPEDYVHRIGRTGRAGADGQAVSLVSGDESKLLRDIERLI 384
>gi|254473978|ref|ZP_05087371.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
gi|211956867|gb|EEA92074.1| dead/deah box helicase domain protein [Pseudovibrio sp. JE062]
Length = 483
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 140/295 (47%), Gaps = 44/295 (14%)
Query: 23 PASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDD 82
P LRA G DIVIATPG + +STG ++ D+ +VLDEAD +L G+
Sbjct: 115 PGPQLRALSKGL-DIVIATPGRLEDHMSTGGIKL----DATTTVVLDEADQMLDLGFAPA 169
Query: 83 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 142
++ + +P+ Q +L+SAT + L K L NP+ +++ V E I ++V +F
Sbjct: 170 IRRILGKLPKVRQTVLLSATMPIQIRNLAKEFLSNPHEISVAPV-SRPIEKIDQSV-RFL 227
Query: 143 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 202
S S+R LL IL+ +E +A++FT T A R+ LEK G+ SA ++ Q +
Sbjct: 228 NSSSKRAALLDILSEDDIE----RAIVFTRTKRGADRVSGHLEKAGLSSAAIHGNKSQRN 283
Query: 203 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 262
R L+ F G L+ATD RGID
Sbjct: 284 REKSLDGFKNGRIKILVATDI---------------------------------AARGID 310
Query: 263 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V V+N+E+P YVHRIGRT RA +G +VSL E +I+ +G
Sbjct: 311 IDGVSHVVNYELPNVPEAYVHRIGRTARAGKSGVAVSLCDATEQPYLRDIERLIG 365
>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Acyrthosiphon pisum]
Length = 450
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 153/319 (47%), Gaps = 54/319 (16%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
IE + +K + M LA P I+IATPG + L +K FS +
Sbjct: 107 IEALGSSIGVKCAVIVGGMDMMAQSLMLAKKPHIIIATPGRLVDHLEN----TKGFSLRN 162
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
LK+LV+DEAD +L+ +E+++ + VIPR + L SAT + V KL + L +P
Sbjct: 163 LKVLVMDEADRILNMDFEEEVDKILKVIPRERRTFLFSATMTKKVQKLHRASLVDP---- 218
Query: 123 LPEVGDVKDEVIPK-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
V+ EV K +QQ++I + K +Y++ +L E+ ++F T +
Sbjct: 219 ------VRVEVSTKFQTVEQLQQYYIFIPVKYKDVYLVHILN-EMAGNSFMVFMATCNGT 271
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237
R+ L L G+ + L+ ++ QN RL L +F + LI+TD +
Sbjct: 272 VRVALLLRNLGLDAIPLHGQMTQNKRLASLNKFKSKSRSILISTDVSS------------ 319
Query: 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
RG+D +V VINF+MP ++ Y+HR+GRT RA +G +
Sbjct: 320 ---------------------RGLDIPHVDVVINFDMPTHSKDYIHRVGRTARAGRSGKA 358
Query: 298 VSLVSPDEMKIFEEIKSFV 316
++LV+ ++++++ I+ +
Sbjct: 359 ITLVTQYDIELYQRIEQLI 377
>gi|302417364|ref|XP_003006513.1| ATP-dependent RNA helicase DRS1 [Verticillium albo-atrum VaMs.102]
gi|261354115|gb|EEY16543.1| ATP-dependent RNA helicase DRS1 [Verticillium albo-atrum VaMs.102]
Length = 757
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 145/299 (48%), Gaps = 49/299 (16%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
L V L+ M ++LR PD++IATPG + S SF+ D+++ILVLDEA
Sbjct: 332 LAVGGLSLKMQEAELRLR----PDVIIATPGRFIDHMRN----SASFAVDAVEILVLDEA 383
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D+L + +P+ Q +L SAT +S VD+L ++ ++ P + + D +
Sbjct: 384 DRMLEDGFADELNEILTSMPKSRQTMLFSATMTSSVDRLIRVGMNTPARVMV----DSQK 439
Query: 132 EVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+ + Q+F E ++ Y+L + K L ++ +IF A R ++ G+
Sbjct: 440 KTVTTLTQEFIRLRPGRESKRMGYLLFICKT-LYTERVIIFFRQKKDAHRARIIFGLLGL 498
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
A L+ + Q R+ +E+F G YL+ATD
Sbjct: 499 SCAELHGSMNQTQRIQSVEDFRDGKVSYLLATD--------------------------- 531
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
L S RG+D K + TVIN+E PQ YVHR+GRT RA G +V+L + + K+
Sbjct: 532 -LAS-----RGLDIKGIDTVINYEAPQKLEIYVHRVGRTARAGRAGVAVTLAAEPDRKV 584
>gi|406696099|gb|EKC99395.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 436
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 146/290 (50%), Gaps = 45/290 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL+ P I++ATPG + L +K FS +LK LVLDEAD LL + + L
Sbjct: 114 ALSKRPHIIVATPGRLMDHLE----NTKGFSLKALKYLVLDEADRLLDLDFGPIIDKLLK 169
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIP+ L SAT S+ V+KLK+ L+ P + + D K + + Q+++ E
Sbjct: 170 VIPKERNTFLFSATLSTKVEKLKRASLNKPIQVKV----DSKYSTV-STLMQYYVFFPEV 224
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y+ L+ EL +IFT+T+D A RL + L + G + L+ ++ Q++RL L
Sbjct: 225 QKDAYLFYLVN-ELSSSSMIIFTSTVDRAQRLSIMLNRLGYPAIPLHGQMSQSARLGSLN 283
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G L+ATD RG+D +V
Sbjct: 284 KFKSGGRKILVATDVAS---------------------------------RGLDIPSVDL 310
Query: 269 VI-NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VI NF++P N+ YVHR+GRT RA +G S++LV+ ++ + + I++ +G
Sbjct: 311 VIQNFDIPSNSKDYVHRVGRTARAGRSGKSITLVTQYDVVMLKGIEAAIG 360
>gi|11121196|emb|CAC14786.1| DEAD box protein [Homo sapiens]
Length = 455
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKESSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQAIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIIAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|54301879|ref|YP_131872.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46915299|emb|CAG22072.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
Length = 455
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 162/333 (48%), Gaps = 59/333 (17%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V + + A+ AL G DI++ATPG + +S+ ++ D +K LVLDEAD
Sbjct: 143 IKTVAVFGGVSANTQMLALRGGTDILVATPGRLLDLISSNAIKL----DRVKTLVLDEAD 198
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+LS G+ D+L AL ++P+ Q LL SAT V L + +L++P + L + D
Sbjct: 199 RMLSLGFTDELSALLGLLPKNKQTLLFSATFPEQVQTLTQELLNDPVEIQL-QSADASTL 257
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V + F ++ E+ LL L+K + ++ALIF N + L L K GI +
Sbjct: 258 V----QRVFTVNKGEKTALLA--HLIK-QNEWRQALIFVNAKNSCEHLADKLSKRGITAE 310
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
+ + + Q +R +L+ F AG + LIATD
Sbjct: 311 VFHGDKGQGARTRVLDAFKAGEIEVLIATDIA---------------------------- 342
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF--- 309
RG+D + + VINF++P++ + Y+HRIGR+GRA G ++SL+ D+ F
Sbjct: 343 -----ARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHDDYHHFKVI 397
Query: 310 ----------EEIKSFVGDDENEDSNIIAPFPL 332
E+++ F D+ NE + +IA P+
Sbjct: 398 EKKNKIRLEREQVEGFEADEVNE-AFLIANKPM 429
>gi|350571452|ref|ZP_08939778.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349792116|gb|EGZ45981.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 441
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 138/292 (47%), Gaps = 51/292 (17%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL+ P D+V+ATPG + + +G K D L++L+LDEAD +L G+ DD++ + A
Sbjct: 122 ALSKPVDLVVATPGRLMDLMDSG----KVDFDRLEVLILDEADRMLDMGFIDDIETIVAA 177
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE-- 147
P Q LL SAT V KL + + NP ++ + V D +++ + C +
Sbjct: 178 TPESRQTLLFSATWDGAVGKLARKLTKNPEVIEIERVDD------QGKIEEQLLYCDDKR 231
Query: 148 -RDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
+D+LL YIL ++ + +IFT+T M L L G + L+ ++PQ R
Sbjct: 232 HKDRLLDYILRDANID----QCVIFTSTKAMTEVLADELYDKGFAANCLHGDMPQGWRNR 287
Query: 206 ILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN 265
L + G L+ATD RGID
Sbjct: 288 TLMDLRKGRCKILVATDV---------------------------------AARGIDVPT 314
Query: 266 VHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+ VIN+++P+ A YVHRIGRTGRA TG +++ +E +I+ ++G
Sbjct: 315 ITHVINYDLPKQAEDYVHRIGRTGRAGRTGLAITFAEVNEYVKVHKIEKYIG 366
>gi|354478220|ref|XP_003501313.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Cricetulus
griseus]
Length = 455
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|407697074|ref|YP_006821862.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
gi|407254412|gb|AFT71519.1| ATP-dependent RNA helicase, DEAD box family [Alcanivorax dieselolei
B5]
Length = 454
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 144/292 (49%), Gaps = 55/292 (18%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
L G D+++ATPG + + Q K+ S D L+ILVLDEAD +L G+ D++ + +
Sbjct: 121 LRGGVDVLVATPGRL-----LDLYQQKAMSFDQLEILVLDEADRMLDMGFIHDIRKVLRL 175
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWIS 144
+P+ Q L+ SAT S+++ L K ++ +P + ++ P+N V+Q+ ++
Sbjct: 176 LPKQRQTLMFSATFSNEIRTLAKTLVRSPKEI----------DISPRNSTAERVRQWVVT 225
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
+R K +LT L E + L+FT T A RL LE GI++ ++ QN+R
Sbjct: 226 VDKRHK-AALLTHLIGEQQWFQVLVFTRTKHGANRLAKQLESAGIEAVAIHGNKSQNART 284
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
L F +G L+ATD RG+D
Sbjct: 285 RALAGFKSGDVRALVATDIA---------------------------------ARGLDID 311
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ V+NF++P A YVHRIGRTGRA G +VSLVS ++ K+ + I+ +
Sbjct: 312 QLPQVVNFDLPNVAEDYVHRIGRTGRAGADGEAVSLVSGEDQKLLKGIERLI 363
>gi|119505184|ref|ZP_01627259.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
gi|119458875|gb|EAW39975.1| RNA helicase DbpA [marine gamma proteobacterium HTCC2080]
Length = 465
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 146/303 (48%), Gaps = 47/303 (15%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+KVV L P R +L IV+ TPG + L G L+ K + VLDEAD
Sbjct: 102 VKVVMLCGGKPFGAQRDSLHHGAHIVVGTPGRIQDHLQRGTLELKGVT----TFVLDEAD 157
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL-PEVGDVKD 131
+L G+ D + ++A +P Q LL+SAT D+ K+ + I NP +T+ EV V D
Sbjct: 158 RMLDMGFADVMAEITAKLPADRQTLLLSATFPDDIKKISRSIQKNPIQITVDAEV--VHD 215
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
EV+ ++Q + + ++ + +L L + A++F NT + FL + I++
Sbjct: 216 EVV---LEQVFFEVQKHERNVALLALFE-HYRPANAMVFCNTKKQCAEVARFLREHDIEA 271
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
A ++ +L Q R +L +F L+A+D
Sbjct: 272 AAIHGDLEQRERDQVLLQFANNSCPVLVASDVA--------------------------- 304
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE---MKI 308
RG+D ++ V+NFE+P++A YVHRIGRTGRA +G + S+V+P E M++
Sbjct: 305 ------ARGLDIPSLEMVVNFELPRDADTYVHRIGRTGRAGESGKAFSIVTPPEAPRMRV 358
Query: 309 FEE 311
E+
Sbjct: 359 IED 361
>gi|27229058|ref|NP_080636.2| probable ATP-dependent RNA helicase DDX47 [Mus musculus]
gi|52782790|sp|Q9CWX9.2|DDX47_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|26345792|dbj|BAC36547.1| unnamed protein product [Mus musculus]
gi|26368455|dbj|BAB26843.2| unnamed protein product [Mus musculus]
gi|66365081|gb|AAH95944.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124297422|gb|AAI32243.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|124298172|gb|AAI32245.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Mus musculus]
gi|148678592|gb|EDL10539.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_b [Mus
musculus]
Length = 455
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIVIATPGRLIDHLEN----TKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|365539790|ref|ZP_09364965.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 465
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 130/272 (47%), Gaps = 43/272 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + ++ + L+ILVLDEAD +L G+ D+K + A++P Q
Sbjct: 125 DILVATPGRLLDLYNQNAIKF----NQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ +L K +++NP E+ K V+Q W+ ++ K +L
Sbjct: 181 NLLFSATFSDEIRQLAKGLVNNPV-----EISVTPRNSTAKTVKQ-WVHPVDKAKKPTLL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L E ++AL+FT T A RL LE GI +A ++ Q +R L F +G
Sbjct: 235 IQLIKENNWQQALVFTRTKHGANRLTAQLEGSGISAAAIHGNKSQGARTKALANFKSGEI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NFE+P
Sbjct: 295 RILVATDI---------------------------------AARGIDIDQLPQVVNFELP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
YVHRIGRTGRA G ++SLV DE K
Sbjct: 322 NVPEDYVHRIGRTGRAGAEGNAISLVCADEAK 353
>gi|344243858|gb|EGV99961.1| putative ATP-dependent RNA helicase DDX47 [Cricetulus griseus]
Length = 586
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 269 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 324
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 325 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 379
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 380 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 438
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 439 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 465
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 466 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 514
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 145/296 (48%), Gaps = 47/296 (15%)
Query: 21 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 80
S S LRA + +I+IATPG L V Q +ILVLDEAD +L G+
Sbjct: 132 SSQTSILRAGV----EILIATPGR----LLDHVQQKNVNLSHTQILVLDEADRMLDMGFL 183
Query: 81 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 140
DL+ + ++P+ Q LL SAT S+D+ KL + + +P + + + +NV+Q
Sbjct: 184 PDLQRIVNLLPKQRQNLLFSATFSNDIKKLARSFMKDPVTVEV-----ARQNATAENVKQ 238
Query: 141 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 200
E +K + LLK + Q++ LIF+NT A RL LE+ G+K++ ++ + Q
Sbjct: 239 TVYRIEESEKNAAVEHLLK-DRNQEQVLIFSNTKAGASRLARQLERKGMKASAIHGDKTQ 297
Query: 201 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 260
R+ LE F +G D L+ATD RG
Sbjct: 298 AERMATLEAFKSGSIDILVATD---------------------------------VAARG 324
Query: 261 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ + + VINF++P A YVHRIGRTGRA + G ++SL S + ++ +EI+
Sbjct: 325 LHIEELPCVINFDLPFVAEDYVHRIGRTGRAGSKGEAISLYSEKDERLLKEIEKLT 380
>gi|18424420|ref|NP_568931.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
gi|108861883|sp|Q8GY84.2|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10
gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
Length = 456
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 164/360 (45%), Gaps = 55/360 (15%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ L+ L + AL P +++ATPG + +S +K FS SLK LVLD
Sbjct: 116 ISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMS----DTKGFSLKSLKYLVLD 171
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL+ +E L + IP + L SAT + V KL++ L NP + E
Sbjct: 172 EADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKI---EAASK 228
Query: 130 KDEVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
V Q +++ +D L+YIL+ E+ + ++IFT T D L L L G
Sbjct: 229 YSTVDTLKQQYRFVAAKYKDCYLVYILS----EMPESTSMIFTRTCDGTRFLALVLRSLG 284
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
++ ++ ++ Q+ RL L +F AG + L+ TD
Sbjct: 285 FRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVAS----------------------- 321
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D +V VIN+++P N+ Y+HR+GRT RA +G +SLV+ E++
Sbjct: 322 ----------RGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEW 371
Query: 309 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
+ +I+ +G + +P + L AE AK ++ + ++ES + R E
Sbjct: 372 YIQIEKLIGKK-------LPEYPAEEDEVLSLLERVAE--AKKLSAMNMKESGGRKRRGE 422
>gi|313228985|emb|CBY18137.1| unnamed protein product [Oikopleura dioica]
Length = 451
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 146/289 (50%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P +++ATPG + L +++ F+ +LK L++DEAD +L+ +E ++ +
Sbjct: 140 ALAKKPHVIVATPGRLVDHLE----KTRGFNLKALKFLIMDEADRILNLDFEAEVDKILR 195
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
IPR Q +L SAT ++ V KL++ L NP +++ + K + + KN+Q++ + E
Sbjct: 196 AIPRERQTMLFSATMTAKVKKLQRAALKNPVKISI----NSKYKTVDKNIQKY-MFIPEA 250
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y+++LL EL +IFT+T + +++ G S L+ ++ Q RL L
Sbjct: 251 HKECYLVSLLN-ELQGSSFMIFTSTCAKTSLIARLVKRLGYDSVPLHGQMSQQKRLGALA 309
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
F L+ TD RG+D +V
Sbjct: 310 RFKGKSRSILVCTDVAS---------------------------------RGLDVPHVDC 336
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P N Y+HR+GRT RA G SV+ VS +++++++I++ +G
Sbjct: 337 VINYDVPTNTKDYIHRVGRTARAGRAGKSVTFVSQYDVELYQKIEAHIG 385
>gi|149713746|ref|XP_001501494.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Equus caballus]
Length = 455
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|383937151|ref|ZP_09990560.1| ATP-dependent RNA helicase RhlE [Rheinheimera nanhaiensis E407-8]
gi|383701778|dbj|GAB60651.1| ATP-dependent RNA helicase RhlE [Rheinheimera nanhaiensis E407-8]
Length = 423
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 135/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D +IATPG + Q+ L++LVLDEAD +L G+ D+K + A++P+ Q
Sbjct: 129 DTLIATPGRLLDLYQ----QNAVKFGQLEVLVLDEADRMLDMGFIHDIKKILALLPKKRQ 184
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ L + ++ NP EV + V+Q I ++++ ++
Sbjct: 185 NLLFSATFSEEIRTLARGLVANPL-----EVSVAPANTTAERVEQL-IYPVDKNRKAALV 238
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
T L + ++ LIFT T MA +L L L+ GIK+A ++ QN+R L +F AG
Sbjct: 239 TKLINDNNWQQVLIFTKTKHMANKLSLHLDAAGIKAAPIHGNKSQNARTKALADFKAGTI 298
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + V+NFE+P
Sbjct: 299 RALVATDI---------------------------------AARGLDIDQLPQVVNFELP 325
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
A YVHRIGRTGRA G ++SLV DE K I+ +
Sbjct: 326 NVAEDYVHRIGRTGRAGAAGHAISLVCADESKELAGIERLI 366
>gi|337745879|ref|YP_004640041.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|379719836|ref|YP_005311967.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386722433|ref|YP_006188759.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|336297068|gb|AEI40171.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|378568508|gb|AFC28818.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384089558|gb|AFH60994.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 537
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 132/277 (47%), Gaps = 53/277 (19%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I+I TPG + ++ ++ D ++ ++LDEAD +L G+ DD+K++ +++P
Sbjct: 121 PQIIIGTPGRLLDHINRKTIKL----DDVQTVILDEADEMLDMGFMDDIKSILSLVPEER 176
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ-----QFWISCSERD 149
+L SAT ++ KL + L +P ++ VIPK V Q +I ER
Sbjct: 177 NTMLFSATMPVNIQKLAQQFLKDPEHVS----------VIPKQVSAPLIDQAYIELHERQ 226
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + L+ +E + A+IF T L L+K G + L+ +L QN R +++ +
Sbjct: 227 KFEALCRLIDME-APELAIIFGRTKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRK 285
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F G D L+ATD RG+D V V
Sbjct: 286 FRDGSIDVLVATDVA---------------------------------ARGLDVSGVTHV 312
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
INF++PQ+ YVHRIGRTGRA GA+ + V+P E+
Sbjct: 313 INFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREI 349
>gi|299829301|ref|NP_001015005.2| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Rattus norvegicus]
gi|149049184|gb|EDM01638.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, isoform CRA_a [Rattus
norvegicus]
Length = 455
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|344337581|ref|ZP_08768515.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
gi|343802534|gb|EGV20474.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
Length = 462
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 139/289 (48%), Gaps = 43/289 (14%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
A L P+I++ATPG + + L TG SD L+ILVLDEAD +L G+ DD+ + A
Sbjct: 119 ATLRKNPEILVATPGRLLELLETG---EADLSD-LEILVLDEADRMLDMGFVDDVLTIIA 174
Query: 89 VIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
Q +L SAT + ++ + +L P ++T+ V E P Q +S
Sbjct: 175 RTNPARQSMLFSATLHHRGLSRITERMLREPRVVTVNPV----REQHPNITNQVLLSDGP 230
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
K +L LL+ E +K AL+F+NT D A L +L G ++A+L+ EL Q R ++
Sbjct: 231 EHKQQQLLWLLRNENYEK-ALVFSNTRDGATALGNYLIGEGQRAAVLHGELEQRERNRVV 289
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
++G + LIATD RG+D V
Sbjct: 290 GLLHSGRVNVLIATDV---------------------------------AARGLDIPGVE 316
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
VINF++P++ Y+HR GRTGRA G ++SLV E E I+ ++
Sbjct: 317 RVINFDLPRSGDDYLHRTGRTGRAGEQGVAISLVGASEWNRLESIERYL 365
>gi|27367363|ref|NP_762890.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|27358932|gb|AAO07880.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
Length = 398
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 140/291 (48%), Gaps = 45/291 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+ AL DI++ATPG + Q + + +++LVLDEAD +L G+ DD+ +
Sbjct: 117 KQALIEGLDILVATPGRLLDMYG----QRAVYFEEIEMLVLDEADRMLDMGFIDDINKIL 172
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P Q LL SAT S+ V L K +HNP+ E+ + N++Q WI +
Sbjct: 173 DRLPENIQHLLFSATLSNKVRDLAKSAIHNPF-----EISIAAKQASKSNIEQ-WIITVD 226
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+D+ +L+ L E + LIF T A +L LEK GI + ++ Q R +L
Sbjct: 227 KDQKSALLSHLIKENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLL 286
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 266
E+F AG YL++T GV RGID + +
Sbjct: 287 EDFKAGKIKYLVST----------------------------------GVAARGIDIEAL 312
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+N+++P A YVHRIGRTGRA G ++SLVS D K I+S +G
Sbjct: 313 PRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCMIESRLG 363
>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 479
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 151/320 (47%), Gaps = 54/320 (16%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
E + LK + + + ALA P +VIATPG + L +K FS +
Sbjct: 116 FEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLEN----TKGFSLRT 171
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
+K LVLDEAD +LS +E+++ + ++P L SAT +S V KL++ L +P
Sbjct: 172 MKFLVLDEADRMLSMDFEEEINQIVQLMPADRNTYLFSATMTSKVRKLQRASLKDP---- 227
Query: 123 LPEVGDVKDEV-----IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
VK E+ P+ ++Q ++ + K Y+ +L E+ + LIF +T +
Sbjct: 228 ------VKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLN-EVAGQSVLIFASTCNGT 280
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237
++ L L G ++ L+ ++PQ SRL L +F A + L+ TD
Sbjct: 281 QKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVAS------------ 328
Query: 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
RG+D +V VIN+++P + Y+HR+GRT RA G +
Sbjct: 329 ---------------------RGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVA 367
Query: 298 VSLVSPDEMKIFEEIKSFVG 317
+S V+ ++++++ I+ +G
Sbjct: 368 ISFVTQYDVELYQRIEHLLG 387
>gi|253996648|ref|YP_003048712.1| DEAD/DEAH box helicase [Methylotenera mobilis JLW8]
gi|253983327|gb|ACT48185.1| DEAD/DEAH box helicase domain protein [Methylotenera mobilis JLW8]
Length = 459
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 134/281 (47%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
++++ATPG + + LQ + +++LVLDEAD +L G+ DLK + A++P+ Q
Sbjct: 138 EVLVATPGRLLDHIEQKTLQL----NQVQMLVLDEADRMLDMGFMPDLKRILALLPKQRQ 193
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT S+++ KL L P ++ + D NV Q ++ DK ++
Sbjct: 194 NLMFSATFSNEIKKLADDFLTKPQLIEVARSNATND-----NVTQKVYQVAQSDKEALLI 248
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ E K+ ++FT T A RL L + GI + ++ + Q R+ L+ F AG
Sbjct: 249 QLLR-EADAKQVIVFTKTKLTASRLSRSLVREGIAADAIHGDKNQQERIKALDAFKAGTV 307
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
LIATD RG+D + VIN+E+P
Sbjct: 308 SALIATD---------------------------------VAARGLDISELPMVINYEIP 334
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA G ++S VS DE K EI+ +
Sbjct: 335 SAPEDYVHRIGRTGRAGALGVAISFVSDDEEKYLVEIEKLI 375
>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
gi|143462228|sp|A1CR32.1|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
Length = 473
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 152/321 (47%), Gaps = 45/321 (14%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
E + ++ + M AL P I++ATPG + L +K FS +
Sbjct: 141 FEALGSTINVRCAVIVGGMDMVSQSIALGKKPHIIVATPGRLLDHLEN----TKGFSLRT 196
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
LK LV+DEAD LL + L + ++PR + L SAT SS V+ L++ L NP ++
Sbjct: 197 LKYLVMDEADRLLDMDFGPLLDKILKILPRERRTFLFSATMSSKVESLQRASLSNPLRVS 256
Query: 123 LPEVGDVKDEVIPKNVQQF-WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
V K + + +Q + +I +D +Y++ LL E V + A+IFT T+ R+
Sbjct: 257 ---VSSNKYQTVSTLLQSYRFIPHKHKD--IYLVYLLN-EFVGQSAIIFTRTVHETQRIS 310
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
L G + L+ +L Q+SRL L +F + D L+ATD
Sbjct: 311 FLLRALGFGAIPLHGQLSQSSRLGALGKFRSRSRDILVATDVA----------------- 353
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D +V V+NF++P ++ YVHR+GRT RA +G ++S V
Sbjct: 354 ----------------ARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFV 397
Query: 302 SPDEMKIFEEIKSFVGDDENE 322
+ +++I+ I+ +G +E
Sbjct: 398 TQYDVEIWLRIEGALGKKLDE 418
>gi|403286623|ref|XP_003934579.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Saimiri
boliviensis boliviensis]
Length = 547
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 230 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 285
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 286 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV----SSKYQTVEK-LQQYYIFIPSK 340
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 341 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 399
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 400 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 426
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 427 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 475
>gi|114052016|ref|NP_001039850.1| probable ATP-dependent RNA helicase DDX47 [Bos taurus]
gi|109825481|sp|Q29S22.1|DDX47_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX47; AltName:
Full=DEAD box protein 47
gi|88758683|gb|AAI13208.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Bos taurus]
gi|296487253|tpg|DAA29366.1| TPA: probable ATP-dependent RNA helicase DDX47 [Bos taurus]
Length = 457
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 140 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 195
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 196 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 250
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 251 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 309
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 310 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 336
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 337 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 385
>gi|322788046|gb|EFZ13884.1| hypothetical protein SINV_03203 [Solenopsis invicta]
Length = 238
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 103/171 (60%), Gaps = 14/171 (8%)
Query: 254 EFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
E GV RGIDF+ V VINF+ P + YVHR GRT R N G ++S V+ E + EE++
Sbjct: 14 ESGVARGIDFQFVSNVINFDFPLDLNSYVHRAGRTARGKNQGTALSFVAIRERPLMEEVE 73
Query: 314 SFVGDDENEDSNIIAPFP------------LLAQNAVESLRYRAEDVAKSVTKIAVRESR 361
+ N + N+ + L+ +N + RYRA+D K+VT+IAVRE+R
Sbjct: 74 QELKHTYNCE-NLFKTYQFKLEEVEGFRADLIFKNCY-NFRYRAKDAWKAVTRIAVREAR 131
Query: 362 AQDLRNEILNSEKLKAHFEVNPKDLDLLKHDKDLSKKPPASHLRDVPDYLL 412
++++ E+++ EKLK++FE NP+DL L+ DK L HL+DVP+Y++
Sbjct: 132 LKEIKQEVMSCEKLKSYFEDNPRDLKSLRQDKTLHIVKLQPHLKDVPEYIV 182
>gi|440910729|gb|ELR60491.1| Putative ATP-dependent RNA helicase DDX47 [Bos grunniens mutus]
Length = 457
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 140 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 195
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 196 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 250
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 251 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 309
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 310 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 336
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 337 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 385
>gi|113970779|ref|YP_734572.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113885463|gb|ABI39515.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 449
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 146/315 (46%), Gaps = 44/315 (13%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+ L Q K + + +D ALA P ++ATPG + L Q F + L
Sbjct: 93 LRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIADHLE----QKNLFLNGL 148
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVI-PRGCQCLLMSAT-SSSDVDKLKKLILHNPYIL 121
++LVLDEAD +L G+ LKA++A + Q L+ SAT S+++++ +L NP +
Sbjct: 149 ELLVLDEADRMLDLGFAPQLKAINAAADHKRRQTLMFSATLDHSEINEIAAALLKNPSHV 208
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
+G E +++ Q C D +LT L + K+ +IFT T RL
Sbjct: 209 A---IGAAHTE--HQDITQRIYLCDHLDHKEALLTRLLSDETHKQVIIFTATRADTERLA 263
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
L G +A L+ EL Q +R I+++F G L+ TD
Sbjct: 264 SKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVAS---------------- 307
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D NV VINF+MP+ A YVHRIGRTGRA G ++SLV
Sbjct: 308 -----------------RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350
Query: 302 SPDEMKIFEEIKSFV 316
P + F++++ F+
Sbjct: 351 GPKDWDNFKKVQLFL 365
>gi|46124501|ref|XP_386804.1| hypothetical protein FG06628.1 [Gibberella zeae PH-1]
gi|91206590|sp|Q4I830.1|DRS1_GIBZE RecName: Full=ATP-dependent RNA helicase DRS1
Length = 796
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 137/276 (49%), Gaps = 43/276 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SFS D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 378 PDVIIATPGRFIDHMRN----SASFSVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 433
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +S VD+L ++ L+ P + + + + + + VQ+F + DK +
Sbjct: 434 RQTMLFSATMTSSVDRLIQIGLNRPARVMV----NSQKKTVTTLVQEFVRLRPGREDKRM 489
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L + L +++ +IF A R ++ G+ A L+ + Q R+ +E+F
Sbjct: 490 GYLAHVCKNLYKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDFRD 549
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G YL+ATD L S RG+D K V TVIN+
Sbjct: 550 GKVAYLLATD----------------------------LAS-----RGLDIKGVDTVINY 576
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
E PQ+ YVHR+GRT RA G ++++ + + K+
Sbjct: 577 EAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKV 612
>gi|350398997|ref|XP_003485378.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
impatiens]
Length = 453
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 143/287 (49%), Gaps = 44/287 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P I+IATPG + L +K F+ SLK LV+DEAD +L+ +E ++ + V
Sbjct: 133 LAKKPHILIATPGRLVDHLEN----TKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRV 188
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IPR + LL SAT + V KL++ L NP + + K + + K +QQ++I +
Sbjct: 189 IPRERRTLLFSATMTKKVQKLQRASLRNPVKVEV----STKYQTVEK-LQQYYIFIPVKF 243
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K +Y++ +L EL +IF T + R L L G + L+ ++ QN R+ L +
Sbjct: 244 KDVYLVHILN-ELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTK 302
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F A LI+TD RG+D +V V
Sbjct: 303 FKAKNRSILISTDVAS---------------------------------RGLDIPHVDIV 329
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
INF++P ++ Y+HR+GRT RA +G S++ V+ ++++++ I+ +
Sbjct: 330 INFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLI 376
>gi|343515196|ref|ZP_08752255.1| DNA and RNA helicase [Vibrio sp. N418]
gi|342798728|gb|EGU34326.1| DNA and RNA helicase [Vibrio sp. N418]
Length = 399
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 153/320 (47%), Gaps = 56/320 (17%)
Query: 10 QVQLKVVQLTSSMPASDL-----------RAALAGPPDIVIATPGCMPKCLSTGVLQSKS 58
QV+ KV ++P + L + AL D+++ATPG + Q
Sbjct: 88 QVEEKVRDYGQNLPLTSLAMYGGVDEKLQKQALIEGVDVLVATPGRLLDLYG----QHAV 143
Query: 59 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
D +++LVLDEAD +L G+ +D+ + +P Q LL SAT S+ V +L K ++NP
Sbjct: 144 HFDEVEVLVLDEADRMLDMGFIEDINKILDRLPTDIQHLLFSATLSNKVRELAKTAVYNP 203
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
+ E+ ++ K+++Q W+ ++DK +L+ L E + LIF T A
Sbjct: 204 F-----EISIAANQASKKSIEQ-WLIAVDKDKKSALLSHLIKENDWDQTLIFIETKHGAA 257
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 238
+L LEK GI++ ++ Q R +L++F AG Y+IAT
Sbjct: 258 KLAQQLEKRGIEAEAFHSGRSQAVRSQLLQDFKAGKIKYMIAT----------------- 300
Query: 239 DSRKSKKHPKAKLDSEFGV-VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
GV RGID + + VIN+++P A YVHRIGRTGRA +G +
Sbjct: 301 -----------------GVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADASGEA 343
Query: 298 VSLVSPDEMKIFEEIKSFVG 317
+S VS D K I+S +G
Sbjct: 344 ISFVSRDNFKNLCMIESRLG 363
>gi|157961286|ref|YP_001501320.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157846286|gb|ABV86785.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 442
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 140/286 (48%), Gaps = 49/286 (17%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
+L G DIV+ATPG + +S+ L+ D+ LVLDEAD +LS G+ ++L L A
Sbjct: 145 SLRGGADIVVATPGRLIDLISSNALKL----DNTTTLVLDEADRMLSLGFTEELNELLAK 200
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL--PEVGDVKDEVIPKNVQQFWISCSE 147
+P+ Q LL SAT +V +L +L+NP + L E + VI N
Sbjct: 201 LPKTKQTLLFSATFPEEVRELTDSLLNNPVEVQLQSSEESTLVQRVITVN---------- 250
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
R++ +L L + ++ LIF + RL LE GI + + +++ Q +R +L
Sbjct: 251 RNRKTALLAQLIKDNQWQQVLIFASAKYSCNRLAQKLENAGITAEVFHSDKGQGARNRVL 310
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
EEF +G LIATD RGID + +
Sbjct: 311 EEFKSGEISVLIATDI---------------------------------AARGIDIEKLP 337
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
VINFE+P++ Y+HRIGR+GRA G ++SL+S DE + F+ I+
Sbjct: 338 IVINFELPRSPVDYMHRIGRSGRAGEAGLAMSLISHDEYQHFKLIE 383
>gi|409399588|ref|ZP_11249862.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
gi|409131306|gb|EKN01017.1| ATP-dependent RNA helicase [Acidocella sp. MX-AZ02]
Length = 549
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 148/326 (45%), Gaps = 59/326 (18%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
+D +A L D++IATPG + G L + +++LV+DEAD +L G+ D++
Sbjct: 146 ADQKAVLTKGVDVLIATPGRLIDLFERGGLLLRD----VRVLVIDEADRMLDMGFIPDIE 201
Query: 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWIS 144
+ A++P Q L SAT + ++ +L L NP +T+ + + +
Sbjct: 202 RIVAMLPTTRQTLFFSATMAPEIRRLADAFLSNPKEITV-----SRQASVATTITTGLAL 256
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQN 201
SE DK + LL+ E VQ A++F N +D+ F+ L K G + L+ +LPQ+
Sbjct: 257 VSEIDKREALRRLLRAEDVQ-NAIVFCNRKRDVDILFK---SLSKHGFAAGALHGDLPQS 312
Query: 202 SRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261
R LE+F AG L+ +D RGI
Sbjct: 313 VRFATLEKFKAGEIKILVCSDVA---------------------------------ARGI 339
Query: 262 DFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321
D + V NF++P +A YVHRIGRTGRA G + +L SP + E ++ +G+
Sbjct: 340 DIGGLSHVFNFDVPHHAEDYVHRIGRTGRAGREGHAYTLASPADKLAVEAVEKLIGN--- 396
Query: 322 EDSNIIAPFPLLAQNAVESLRYRAED 347
P P + + ++ + + ED
Sbjct: 397 -------PIPRIEVSGLDEVEWSEED 415
>gi|326476440|gb|EGE00450.1| ATP-dependent rRNA helicase RRP3 [Trichophyton tonsurans CBS
112818]
gi|326482119|gb|EGE06129.1| ATP-dependent rRNA helicase RRP3 [Trichophyton equinum CBS 127.97]
Length = 474
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 146/289 (50%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 163 SLGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILK 218
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ + K + + + Q +I +
Sbjct: 219 VLPRERRTYLFSATLSSKVESLQRASLSNPLRVS---ISSNKYQTV-STLLQSYIFIPHK 274
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ +L E + +IFT T++ RL + L G + L+ +L Q++RL L
Sbjct: 275 YKDIYLVHILN-EFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALG 333
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G D L+ATD RG+D V
Sbjct: 334 KFRSGSRDILVATDV---------------------------------AARGLDIPAVDL 360
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G ++S+V+ E++I++ I++ +G
Sbjct: 361 VLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALG 409
>gi|432107717|gb|ELK32877.1| Putative ATP-dependent RNA helicase DDX47 [Myotis davidii]
Length = 455
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P +VIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHVVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L +P + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKDPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G S++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEHLIG 383
>gi|452839340|gb|EME41279.1| hypothetical protein DOTSEDRAFT_73630 [Dothistroma septosporum
NZE10]
Length = 513
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 149/313 (47%), Gaps = 43/313 (13%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ ++ L M AL P IV+ATPG + L +K FS SLK LV+D
Sbjct: 181 INVRCAVLVGGMDMVPQAIALNKNPHIVVATPGRLLDHLEN----TKGFSMRSLKYLVMD 236
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL + L + V+P + +L SAT S+ ++ L + L NP +++
Sbjct: 237 EADRLLDLDFGPILDKILQVLPSKRRTMLFSATMSTKLNNLTRAALQNPVRVSISS---- 292
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
KN+ Q +I + K +Y++ LL E + ++FT TI+ R+ L G
Sbjct: 293 SSYQTVKNLMQRYIFIPHKFKDIYLVYLLN-EFAGQTCIVFTRTINETQRIAFLLRALGR 351
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ L+ ++ Q++RL L +F G + L+ATD
Sbjct: 352 SAIPLHGQMNQSARLGALNKFRGGSREILVATDVA------------------------- 386
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RG+D +V V+NF++P ++ YVHR+GRT RA +G ++S+V+ +++I+
Sbjct: 387 --------ARGLDIPSVDLVLNFDLPPDSKTYVHRVGRTARAGKSGVAISVVTQYDIEIY 438
Query: 310 EEIKSFVGDDENE 322
+ I+ +G +E
Sbjct: 439 QRIEKALGKKLDE 451
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 43/284 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + + G L+ D + LVLDEAD +L+ G+ DD++A+ +
Sbjct: 116 ALKNHPQIIVGTPGRILDHIHRGTLKL----DHVHTLVLDEADEMLNMGFIDDIEAILST 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P+ Q +L SAT + K+ + ++NP ++ + K+ +P +++Q++I ER+
Sbjct: 172 VPKDRQTMLFSATMPDPIRKIAERFMNNPELVRV----KAKEMTVP-SIEQYYIKVQERE 226
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + LL ++ A++F T L L G + ++ +L Q RL +L +
Sbjct: 227 KFDVLSRLLDVQ-SPDLAIVFGRTKRRVDELANALTLRGYLAEGIHGDLSQAKRLSVLRK 285
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F G D L+ATD RG+D V V
Sbjct: 286 FKDGKIDVLVATDV---------------------------------AARGLDISGVTHV 312
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
N+++PQ+ YVHRIGRTGRA G +++ V+P EM + ++
Sbjct: 313 YNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTVE 356
>gi|91088115|ref|XP_969791.1| PREDICTED: similar to GA21647-PA [Tribolium castaneum]
gi|270012107|gb|EFA08555.1| hypothetical protein TcasGA2_TC006210 [Tribolium castaneum]
Length = 451
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 150/320 (46%), Gaps = 54/320 (16%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
IE + +K + M LA P I+IATPG + L +K F+ +
Sbjct: 107 IEALGANIGVKCAVIVGGMDMMSQALILAKKPHILIATPGRLLDHLEN----TKGFNLKA 162
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
LK LV+DEAD +L+ +E ++ + VIPR L SAT + V KL++ L +P
Sbjct: 163 LKYLVMDEADRILNMDFEVEVDKILKVIPRERHTFLFSATMTKKVKKLQRACLRDP---- 218
Query: 123 LPEVGDVKDEVIPK-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
VK EV K +QQ++I + K +Y++ +L E+ +IF +T +
Sbjct: 219 ------VKVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILN-EMAGNSFMIFCSTCNNT 271
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237
R L L G+ + L+ ++ QN RL L +F A LI+TD
Sbjct: 272 IRTALLLRNLGLTAVPLHGQMSQNKRLAALTKFKAKNRSILISTDVAS------------ 319
Query: 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
RG+D +V VINF++P ++ Y+HR+GRT RA +G +
Sbjct: 320 ---------------------RGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKA 358
Query: 298 VSLVSPDEMKIFEEIKSFVG 317
++ V+ ++++++ I+ +G
Sbjct: 359 ITFVTQYDVELYQRIEQLIG 378
>gi|357505249|ref|XP_003622913.1| ATP-dependent RNA helicase dbp9 [Medicago truncatula]
gi|355497928|gb|AES79131.1| ATP-dependent RNA helicase dbp9 [Medicago truncatula]
Length = 1155
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 148/316 (46%), Gaps = 46/316 (14%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS- 62
E ++ +K L + +A P I++ TPG + L +K FS +
Sbjct: 816 FEALGSEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLDHLK----NTKGFSLAR 871
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
LK LVLDEAD LL+ +E+ L + +IPR + L SAT ++ V+KL+++ L NP +
Sbjct: 872 LKYLVLDEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTNKVEKLQRVCLRNPVKI- 930
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
E V Q ++ +D L+YIL+ E+ +++FT T D L
Sbjct: 931 --ETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILS----EMAGSTSMVFTRTCDSTRLLA 984
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
L L G+K+ +N + Q RL L +F +G + L+ TD
Sbjct: 985 LILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVAS---------------- 1028
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D V VIN+++P N+ Y+HR+GRT RA +G ++SLV
Sbjct: 1029 -----------------RGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLV 1071
Query: 302 SPDEMKIFEEIKSFVG 317
+ E++ + +I+ +G
Sbjct: 1072 NQYELEWYVQIEKLIG 1087
>gi|332232745|ref|XP_003265564.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 [Nomascus
leucogenys]
Length = 455
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P ++IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHVIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEYLIG 383
>gi|90409933|ref|ZP_01217950.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
gi|90329286|gb|EAS45543.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
Length = 462
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/333 (30%), Positives = 162/333 (48%), Gaps = 59/333 (17%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V + + A+ AL G DI++ATPG + +S+ ++ D +K LVLDEAD
Sbjct: 150 IKTVAVFGGVSANTQMLALRGGTDILVATPGRLLDLISSNAIKL----DRVKTLVLDEAD 205
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+LS G+ D+L AL ++P+ Q LL SAT V L + +L++P + L + D
Sbjct: 206 RMLSLGFTDELSALLDLLPKNKQTLLFSATFPEQVQALTQELLNDPVEIQL-QSADASTL 264
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
V + F ++ E+ LL L+K + ++ALIF N + L L K GI +
Sbjct: 265 V----QRVFTVNKGEKTALLA--HLIK-QHEWRQALIFVNAKNSCEHLADKLSKRGITAE 317
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
+ + + Q +R +LE F +G + LIATD
Sbjct: 318 VFHGDKGQGARTRVLEAFKSGEIEVLIATDIA---------------------------- 349
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF--- 309
RG+D + + VINF++P++ + Y+HRIGR+GRA G ++SL+ D+ F
Sbjct: 350 -----ARGLDIEKLPVVINFDLPRSPSDYMHRIGRSGRAGEVGLALSLIDHDDYHHFKVI 404
Query: 310 ----------EEIKSFVGDDENEDSNIIAPFPL 332
E+++ F D+ NE + +IA P+
Sbjct: 405 EKKNKIRLEREQVEGFEADEVNE-AFLIANKPM 436
>gi|37677117|ref|NP_937513.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|37201662|dbj|BAC97483.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
Length = 402
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 140/291 (48%), Gaps = 45/291 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+ AL DI++ATPG + Q + + +++LVLDEAD +L G+ DD+ +
Sbjct: 121 KQALIEGLDILVATPGRLLDMYG----QRAVYFEEIEMLVLDEADRMLDMGFIDDINKIL 176
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P Q LL SAT S+ V L K +HNP+ E+ + N++Q WI +
Sbjct: 177 DRLPENIQHLLFSATLSNKVRDLAKSAIHNPF-----EISIAAKQASKSNIEQ-WIITVD 230
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+D+ +L+ L E + LIF T A +L LEK GI + ++ Q R +L
Sbjct: 231 KDQKSALLSHLIKENQWDQTLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLL 290
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 266
E+F AG YL++T GV RGID + +
Sbjct: 291 EDFKAGKIKYLVST----------------------------------GVAARGIDIEAL 316
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+N+++P A YVHRIGRTGRA G ++SLVS D K I+S +G
Sbjct: 317 PRVVNYDLPFPADEYVHRIGRTGRANAKGEAISLVSKDNFKNLCMIESRLG 367
>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
gi|143462290|sp|A1D405.1|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
Length = 472
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 143/289 (49%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 166 ALGKKPHIIVATPGRLLDHLEN----TKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILK 221
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ V K + + + Q ++ +
Sbjct: 222 VLPRERRTFLFSATMSSKVESLQRASLSNPLRVS---VSSNKYQTV-STLLQSYLFLPHK 277
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ LL E V + A+IFT T+ R+ L G + L+ +L Q++RL L
Sbjct: 278 HKDIYLVYLLN-EFVGQSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALG 336
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F + D L+ATD RG+D +V
Sbjct: 337 KFRSRSRDILVATDV---------------------------------AARGLDIPSVDV 363
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ YVHR+GRT RA +G ++S V+ +++I+ I+ +G
Sbjct: 364 VLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALG 412
>gi|358386646|gb|EHK24241.1| hypothetical protein TRIVIDRAFT_31450 [Trichoderma virens Gv29-8]
Length = 479
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 143/289 (49%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L ++K FS SLK LV+DEAD LL + + +
Sbjct: 170 ALGKKPHIIVATPGRLVDHLE----KTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILK 225
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
IPR + L SAT SS V+ L++ L +P ++ V K + + + Q +I +
Sbjct: 226 FIPRERRTYLFSATLSSKVESLQRASLRDPVRVS---VSSSKYQTV-STLLQHYIFVPHK 281
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ L+ E K +IFT T+ R+ + L G + L+ +L Q+SRL L
Sbjct: 282 RKDTYLIYLVN-EFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLGALN 340
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F G + L+ATD RG+D V
Sbjct: 341 KFKGGSREILVATDVA---------------------------------ARGLDIPAVDV 367
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+N ++PQ++ Y+HR+GRT RA +G ++S+V+ +++I++ I++ +G
Sbjct: 368 VLNLDLPQDSKTYIHRVGRTARAGKSGIAISIVTQYDVEIYQRIEAALG 416
>gi|444910739|ref|ZP_21230918.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
gi|444718836|gb|ELW59644.1| ATP-dependent RNA helicase RhlE [Cystobacter fuscus DSM 2262]
Length = 550
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 137/274 (50%), Gaps = 56/274 (20%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P +V+ATPG + L GV+ ++++LVLDEAD +L G+ +L+ + A +PR
Sbjct: 121 PSLVLATPGRLADLLQAGVVNL----STVRMLVLDEADRMLEMGFMPELEKILAALPRER 176
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP------KNVQQFWISCSER 148
Q LL SAT +V + + +L P V+ EV P + VQ+ + SE
Sbjct: 177 QTLLFSATLGHNVTRFAQEVLRKP----------VRVEVTPSGTPAARAVQRLYDVKSE- 225
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
+K +LTLL + Q A++FT T + A +++ +L++ G K+A+++++ Q R LE
Sbjct: 226 EKYPLLLTLLARD--QLSAIVFTRTRERAEKVQGYLKEAGHKAALIHSDRTQGQRRQALE 283
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
F G + L+ATD RG+D +++
Sbjct: 284 GFRKGQYRCLVATDIAS---------------------------------RGLDVEDIGH 310
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 302
VINF++P + YVHRIGRT RA +G + + V+
Sbjct: 311 VINFDLPHSPEDYVHRIGRTARAGASGRASTFVT 344
>gi|390945687|ref|YP_006409447.1| DNA/RNA helicase [Alistipes finegoldii DSM 17242]
gi|390422256|gb|AFL76762.1| DNA/RNA helicase, superfamily II [Alistipes finegoldii DSM 17242]
Length = 473
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 141/294 (47%), Gaps = 43/294 (14%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + G + S SD ++ VLDEAD +L G+ D+K + ++P+ Q
Sbjct: 126 DLLVATPGRLLDLIGQGYV---SLSD-IRFFVLDEADRMLDMGFIHDIKRILPLLPKERQ 181
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L SAT SD+ L +LH+P +T+ V E I ++V F ++D L+ +L
Sbjct: 182 TLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVV-ETISQSV-MFAEKAEKKDLLISLL 239
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
E + L+F+ T A R+ L K GI+ ++ + Q +R + +F AG
Sbjct: 240 R----ERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRC 295
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
LIATD RGID + VIN+++P
Sbjct: 296 RVLIATDI---------------------------------AARGIDISELPLVINYDLP 322
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAP 329
+ A YVHRIGRTGRA + G +++ S DE + ++I+ G + DS + P
Sbjct: 323 EVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLKDIQKLTGLVLDPDSGRLTP 376
>gi|301765212|ref|XP_002918022.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Ailuropoda melanoleuca]
Length = 455
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 138/284 (48%), Gaps = 43/284 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + + G L+ D + LVLDEAD +L+ G+ DD++A+ +
Sbjct: 116 ALKNHPQIIVGTPGRILDHIHRGTLKL----DHVHTLVLDEADEMLNMGFIDDIEAILST 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P+ Q +L SAT + K+ + ++NP ++ + K+ +P +++Q+++ ER+
Sbjct: 172 VPKDRQTMLFSATMPDPIRKIAERFMNNPELVRV----KAKEMTVP-SIEQYYVKVQERE 226
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + LL ++ A++F T L L G + ++ +L Q RL +L +
Sbjct: 227 KFDVLSRLLDVQ-SPDLAIVFGRTKRRVDELANALNLRGYLAEGIHGDLSQAKRLSVLRK 285
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F G D L+ATD RG+D V V
Sbjct: 286 FKDGKIDVLVATDV---------------------------------AARGLDISGVTHV 312
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
N+++PQ+ YVHRIGRTGRA G +++ V+P EM + ++
Sbjct: 313 YNYDIPQDPESYVHRIGRTGRAGREGMAMTFVTPREMGYLKTVE 356
>gi|117921047|ref|YP_870239.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117613379|gb|ABK48833.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 449
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 146/315 (46%), Gaps = 44/315 (13%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
+ L Q K + + +D ALA P ++ATPG + L Q F + L
Sbjct: 93 LRLLVANTQYKAISVLGGENFNDQAKALAKEPHFIVATPGRIADHLE----QKNLFLNGL 148
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVI-PRGCQCLLMSAT-SSSDVDKLKKLILHNPYIL 121
++LVLDEAD +L G+ LKA++A + Q L+ SAT S+++++ +L NP +
Sbjct: 149 ELLVLDEADRMLDLGFAPQLKAINAAADHKRRQTLMFSATLDHSEINEIAAALLKNPSHV 208
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
+G E +++ Q C D +LT L + K+ +IFT T RL
Sbjct: 209 A---IGAAHTE--HQDITQRIYLCDHLDHKEALLTRLLSDETHKQVIIFTATRADTERLA 263
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
L G +A L+ EL Q +R I+++F G L+ TD
Sbjct: 264 SKLSAQGFATAALSGELKQAARNQIMDQFARGQQQILVTTDVAS---------------- 307
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D NV VINF+MP+ A YVHRIGRTGRA G ++SLV
Sbjct: 308 -----------------RGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLV 350
Query: 302 SPDEMKIFEEIKSFV 316
P + F++++ F+
Sbjct: 351 GPKDWDNFKKVQLFL 365
>gi|327307140|ref|XP_003238261.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
gi|326458517|gb|EGD83970.1| ATP-dependent rRNA helicase RRP3 [Trichophyton rubrum CBS 118892]
Length = 474
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 146/289 (50%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 163 SLGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILK 218
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ + K + + + Q +I +
Sbjct: 219 VLPRERRTYLFSATLSSKVESLQRASLSNPLRVS---ISSNKYQTV-STLLQSYIFIPHK 274
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ +L E + +IFT T++ RL + L G + L+ +L Q++RL L
Sbjct: 275 YKDIYLVHILN-EFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALG 333
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G D L+ATD RG+D V
Sbjct: 334 KFRSGSRDILVATDV---------------------------------AARGLDIPAVDL 360
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G ++S+V+ E++I++ I++ +G
Sbjct: 361 VLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALG 409
>gi|336124129|ref|YP_004566177.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335341852|gb|AEH33135.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 485
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 130/272 (47%), Gaps = 43/272 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + ++ + L+ILVLDEAD +L G+ D+K + A++P Q
Sbjct: 146 DILVATPGRLLDLYNQNAIKF----NQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 201
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ +L K +++NP E+ K V+Q W+ ++ K +L
Sbjct: 202 NLLFSATFSDEIRQLAKGLVNNPV-----EISVTPRNSTAKTVKQ-WVHPVDKAKKPALL 255
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L E ++AL+FT T A RL LE GI +A ++ Q +R L F +G
Sbjct: 256 IQLIKENNWQQALVFTRTKHGANRLTAQLEGSGISAAAIHGNKSQGARTKALANFKSGEI 315
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NFE+P
Sbjct: 316 RILVATDI---------------------------------AARGIDIDQLPQVVNFELP 342
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
YVHRIGRTGRA G ++SLV DE K
Sbjct: 343 NVPEDYVHRIGRTGRAGAEGNAISLVCADEAK 374
>gi|410963864|ref|XP_003988479.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Felis catus]
Length = 455
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P ++IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHVIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYVFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|315055611|ref|XP_003177180.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
gi|311339026|gb|EFQ98228.1| ATP-dependent rRNA helicase RRP3 [Arthroderma gypseum CBS 118893]
Length = 474
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 146/289 (50%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 163 SLGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILK 218
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ + K + + + Q +I +
Sbjct: 219 VLPRERRTYLFSATLSSKVESLQRASLSNPLRVS---ISSNKYQTV-STLLQSYIFIPHK 274
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ +L E + +IFT T++ RL + L G + L+ +L Q++RL L
Sbjct: 275 YKDIYLVHILN-EFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALG 333
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G D L+ATD RG+D V
Sbjct: 334 KFRSGSRDILVATDV---------------------------------AARGLDIPAVDL 360
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G ++S+V+ E++I++ I++ +G
Sbjct: 361 VLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALG 409
>gi|73997167|ref|XP_534885.2| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Canis lupus familiaris]
Length = 456
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 138 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 193
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 194 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 248
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 249 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 307
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 308 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 334
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 335 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 383
>gi|254374244|ref|ZP_04989726.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
gi|151571964|gb|EDN37618.1| hypothetical protein FTDG_00409 [Francisella novicida GA99-3548]
Length = 441
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 140/282 (49%), Gaps = 43/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG + S ++ DSL VLDEAD +L G+ +DLK + ++P+ Q
Sbjct: 125 EILIATPGRLLDLYSQNAVKF----DSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT SS++ L L+NP ++ DV + + K Q+ + + + +K+ ++
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDKSNKINALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L +F +
Sbjct: 236 SLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RGID + VIN ++P
Sbjct: 295 NVLVATDIA---------------------------------ARGIDIAQLPCVINLDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 322 NVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L +P + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRDPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIVELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|346324903|gb|EGX94500.1| ATP-dependent RNA helicase (Drs1), putative [Cordyceps militaris
CM01]
Length = 769
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 134/276 (48%), Gaps = 43/276 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SF D+++ILVLDEAD +L G+ D+L + +P+
Sbjct: 373 PDVIIATPGRFIDHMRN----SASFPIDTVEILVLDEADRMLEDGFADELNEILTTLPKS 428
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +S VD+L +L ++ P + + D + + VQ+F + +K +
Sbjct: 429 RQTMLFSATMTSTVDRLIRLGMNKPARVMV----DSQKRTVGTLVQEFVRLRPGRENKRM 484
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
LT L L ++ ++F A ++ G+ A L+ + Q R+ +E F
Sbjct: 485 GYLTHLCKTLYTERVIVFFRQKKDAHEARIIFSILGMTCAELHGSMSQTGRIESVEAFRD 544
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +YL+ATD L S RG+D + V TVIN+
Sbjct: 545 GKVNYLLATD----------------------------LAS-----RGLDIRGVDTVINY 571
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
E PQ+ YVHR+GRT RA G +++L + + K+
Sbjct: 572 EAPQSLEIYVHRVGRTARAGRKGVALTLAAESDRKV 607
>gi|302508139|ref|XP_003016030.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
gi|291179599|gb|EFE35385.1| hypothetical protein ARB_05427 [Arthroderma benhamiae CBS 112371]
Length = 474
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 146/289 (50%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 163 SLGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILK 218
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ + K + + + Q +I +
Sbjct: 219 VLPRERRTYLFSATLSSKVESLQRASLSNPLRVS---ISSNKYQTV-STLLQSYIFIPHK 274
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ +L E + +IFT T++ RL + L G + L+ +L Q++RL L
Sbjct: 275 YKDIYLVHILN-EFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALG 333
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G D L+ATD RG+D V
Sbjct: 334 KFRSGSRDILVATDV---------------------------------AARGLDIPAVDL 360
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G ++S+V+ E++I++ I++ +G
Sbjct: 361 VLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALG 409
>gi|348689923|gb|EGZ29737.1| hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae]
Length = 482
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 151/320 (47%), Gaps = 54/320 (16%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
E + LK + + + ALA P +VIATPG + L +K FS +
Sbjct: 119 FEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLEN----TKGFSLRT 174
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
+K LVLDEAD +LS +E+++ + ++P L SAT +S V KL++ L +P
Sbjct: 175 MKFLVLDEADRMLSMDFEEEINQIVQLMPAERNTYLFSATMTSKVRKLQRASLKDP---- 230
Query: 123 LPEVGDVKDEV-----IPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
VK E+ P+ ++Q ++ + K Y+ +L E+ + LIF +T +
Sbjct: 231 ------VKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVLN-EVAGQSVLIFASTCNGT 283
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237
++ L L G ++ L+ ++PQ SRL L +F A + L+ TD
Sbjct: 284 QKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNVLVCTDVAS------------ 331
Query: 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
RG+D +V VIN+++P + Y+HR+GRT RA G +
Sbjct: 332 ---------------------RGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVA 370
Query: 298 VSLVSPDEMKIFEEIKSFVG 317
+S V+ ++++++ I+ +G
Sbjct: 371 ISFVTQYDVELYQRIEHLLG 390
>gi|334366430|ref|ZP_08515362.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
Length = 473
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 141/294 (47%), Gaps = 43/294 (14%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + G + S SD ++ VLDEAD +L G+ D+K + ++P+ Q
Sbjct: 126 DLLVATPGRLLDLIGQGYV---SLSD-IRFFVLDEADRMLDMGFIHDIKRILPLLPKERQ 181
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L SAT SD+ L +LH+P +T+ V E I ++V F ++D L+ +L
Sbjct: 182 TLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVV-ETISQSV-MFAEKAEKKDLLISLL 239
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
E + L+F+ T A R+ L K GI+ ++ + Q +R + +F AG
Sbjct: 240 R----ERSEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRC 295
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
LIATD RGID + VIN+++P
Sbjct: 296 RVLIATDI---------------------------------AARGIDISELPLVINYDLP 322
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAP 329
+ A YVHRIGRTGRA + G +++ S DE + ++I+ G + DS + P
Sbjct: 323 EVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLKDIQKLTGLVLDPDSGRLTP 376
>gi|119946865|ref|YP_944545.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119865469|gb|ABM04946.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 429
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 134/281 (47%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + + K L++L+LDEAD +L G+ D+K + AV+P+ Q
Sbjct: 125 DVLVATPGRLIDLYNQNAVSFKQ----LEVLILDEADRMLDMGFIHDIKRILAVLPKQRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S D+ +L K +++NP E+ +NV Q + K + +
Sbjct: 181 NLLFSATFSPDIRRLAKGLVNNPV-----EISVSPRNTTAENVTQTVYEVDKTKKSIVLS 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
TL+K Q + L+F T A RL LE GI +A ++ Q +R L F G
Sbjct: 236 TLIKQNDWQ-QVLVFVKTKHGANRLVKSLEGRGITAAAIHGNKSQAARTRALAGFKEGQV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NF++P
Sbjct: 295 RALVATDIA---------------------------------ARGIDIDQLPQVVNFDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ YVHRIGRTGRA N G ++SLV +E K+ ++I+ +
Sbjct: 322 HVSEDYVHRIGRTGRAGNEGQALSLVCNEEFKLLKDIEKLI 362
>gi|91793881|ref|YP_563532.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91715883|gb|ABE55809.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 426
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 142/303 (46%), Gaps = 49/303 (16%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+KVV + + AL G DIV+ATPG + LS+ L+ S LVLDEAD
Sbjct: 112 IKVVAAFGGVSVNTQMLALRGGADIVVATPGRLLDLLSSNALKLADVST----LVLDEAD 167
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL--PEVGDVK 130
+LS G+ D++ + ++P+ Q LL SAT +V +L +L++P + L PE +
Sbjct: 168 RMLSLGFTDEIGQILGLLPKKKQTLLFSATFPEEVRQLTDALLNSPLEIQLQNPESSTLV 227
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
V+ N R+K +L L E ++ LIF + L L K GI
Sbjct: 228 QRVMTVN----------REKKTALLAHLLNEHQWRQVLIFVGAKNSCNHLAQKLAKRGIT 277
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+ + + + Q +R +LE F AG LIATD
Sbjct: 278 AEVFHGDKAQGARSRVLEGFKAGDIQVLIATDIA-------------------------- 311
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
RG+D + + VINF++P++ A Y+HRIGR+GRA G ++SL+S DE F
Sbjct: 312 -------ARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLLSHDEYHHFT 364
Query: 311 EIK 313
I+
Sbjct: 365 VIE 367
>gi|313222268|emb|CBY39229.1| unnamed protein product [Oikopleura dioica]
Length = 324
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 125/209 (59%), Gaps = 15/209 (7%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
IVI TPG + L + L S ++ L ++VLDEADLL +G + + + + +P Q
Sbjct: 117 IVIGTPGRILNALKSERL---SLTE-LSVMVLDEADLLFGFGNDKMVTEIVSHLPGTQQS 172
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIP--KNVQQFWISCSER-DKLLY 153
LMSAT S V+K+KKL L NP L L D +P + +QQ+ I+ +E +K L
Sbjct: 173 FLMSATLSEQVEKIKKLTLRNPVTLKL------DDSSLPNAETLQQYQINLNEDFEKYLV 226
Query: 154 ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
IL+ LKL +V+ K+L+F + ++LKLFL++FGI S +L++EL SR + +++FN G
Sbjct: 227 ILSFLKLRIVRGKSLVFACGTNRCYKLKLFLKQFGIPSVVLSSELAAASRHNAVQQFNKG 286
Query: 214 LFDYLIATDDTQTKEKDQSDEGGHVDSRK 242
FD +IA D Q ++ +EG H ++K
Sbjct: 287 KFDVMIAND--QVDLDEEIEEGEHTKAKK 313
>gi|118497423|ref|YP_898473.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|195536115|ref|ZP_03079122.1| dead/deah box helicase domain protein [Francisella novicida FTE]
gi|118423329|gb|ABK89719.1| ATP-dependent RNA helicase [Francisella novicida U112]
gi|194372592|gb|EDX27303.1| dead/deah box helicase domain protein [Francisella tularensis
subsp. novicida FTE]
Length = 441
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 140/282 (49%), Gaps = 43/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG + S ++ DSL VLDEAD +L G+ +DLK + ++P+ Q
Sbjct: 125 EILIATPGRLLDLYSQNAVKF----DSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT SS++ L L+NP ++ DV + + K Q+ + + + +K+ ++
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDKSNKINALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L +F +
Sbjct: 236 SLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RGID + VIN ++P
Sbjct: 295 NVLVATDIA---------------------------------ARGIDIAQLPCVINLDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 322 NVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|109898452|ref|YP_661707.1| DEAD/DEAH box helicase [Pseudoalteromonas atlantica T6c]
gi|109700733|gb|ABG40653.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
T6c]
Length = 435
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 43/280 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + Q+ D L+ILVLDEAD +L G+ D+K + ++P Q
Sbjct: 125 DILVATPGRLLDLYN----QNAVRFDDLEILVLDEADRMLDMGFIHDIKKVLKLLPTKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S D+ L K +++NP EV + V+QF + K ++
Sbjct: 181 NLLFSATFSDDIRALAKGLVNNPV-----EVSVSPPNTTVEAVEQFVCPVDKNQKTPALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
++K Q + L+F+ T A R+ LE GI SA ++ Q +R L EF +G
Sbjct: 236 RMIKDNDWQ-QVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + V+N+++P
Sbjct: 295 RALVATDIA---------------------------------ARGLDISQLPQVVNYDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
A YVHRIGRTGRA +G ++SLV+ DE + +I+ F
Sbjct: 322 NVAEDYVHRIGRTGRAGASGQAISLVTADEFSLLADIERF 361
>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 508
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + L ++IL+LDEAD +L G+ D++ + A++P+ Q
Sbjct: 131 DILVATPGRLLDHVGQKTLDLSG----VEILILDEADRMLDMGFIRDIRKILALLPKQRQ 186
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ L +LHNP + + + + VQQ S +++ K ++
Sbjct: 187 NLLFSATFSDEIRSLANGLLHNPGCVEV-----ARRNTASELVQQSVYSVAQKQKRDLLV 241
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L+K + + L+FT T A +L +L K GI SA ++ Q++R L EF G
Sbjct: 242 HLVK-QNDWHQVLVFTRTKHGANKLAEYLAKHGIPSAAIHGNKSQSARTRALAEFKDGSL 300
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + V+NFE+P
Sbjct: 301 PVLVATDI---------------------------------AARGLDIDQLPHVVNFELP 327
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
YVHRIGRTGRA ++GA+VS V +E + I+ +
Sbjct: 328 NVPEDYVHRIGRTGRAGSSGAAVSFVDSEERQHLTAIERLI 368
>gi|351711397|gb|EHB14316.1| Putative ATP-dependent RNA helicase DDX47 [Heterocephalus glaber]
Length = 454
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P +VIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 137 ALAKKPHVVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 192
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 193 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 247
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 248 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 306
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 307 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 333
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 334 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 382
>gi|346318712|gb|EGX88314.1| ATP-dependent rRNA helicase RRP3 [Cordyceps militaris CM01]
Length = 480
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 146/294 (49%), Gaps = 43/294 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P +++ATPG + L ++K FS +LK LVLDEAD LL + + ++ L
Sbjct: 172 ALGKKPHVIVATPGRLVDHLE----KTKGFSLRTLKYLVLDEADRLLDMDFGESIEKLLK 227
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
IPR + L SAT SS V+ L++ L +P ++ V K + + ++Q ++ +
Sbjct: 228 FIPRERRTYLFSATMSSSVESLQRASLRDPVRVS---VSASKYQTV-STLKQHYVFIPHK 283
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ ++ E K ++FT T+ R + L G + L+ +L Q++RL L
Sbjct: 284 RKDTYLIHIIN-EFAGKSCIVFTRTVYETQRCAVLLRTLGFGAIPLHGQLSQSARLGALN 342
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F G + L+ATD RG+D V
Sbjct: 343 KFRGGTREILVATDV---------------------------------AARGLDIPKVDV 369
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
++N+++P ++ Y+HR+GRT RA +G ++S+V+ ++++F I++ +G +E
Sbjct: 370 ILNYDIPSDSKTYIHRVGRTARAGKSGVAISIVTQFDIELFTRIEAALGKKLDE 423
>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 535
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 131/277 (47%), Gaps = 43/277 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I+I TPG + ++ ++ + ++ +VLDEAD +L G+ +D++++
Sbjct: 116 ALKKKPQIIIGTPGRLLDHINRKTIKL----EDVQTVVLDEADEMLDMGFMEDIQSILKQ 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT ++ KL + L NP V + +V +QQ + ER
Sbjct: 172 VPEERQTLLFSATMPPNIQKLAQQFLKNP-----EHVAVISKQVTAPTIQQNYFEVHERQ 226
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + LL +E + A+IF T L L+K G + L+ +L QN R +++ +
Sbjct: 227 KFEALCRLLDME-SPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRK 285
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F G D L+ATD RG+D V V
Sbjct: 286 FRDGSIDVLVATDVA---------------------------------ARGLDVSGVTHV 312
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
INF++PQ+ YVHRIGRTGRA G++ S V+P E+
Sbjct: 313 INFDLPQDPESYVHRIGRTGRAGKEGSAYSFVTPREV 349
>gi|59712046|ref|YP_204822.1| DEAD/DEAH box helicase [Vibrio fischeri ES114]
gi|59480147|gb|AAW85934.1| ATP-dependent RNA helicase, DEAD box family [Vibrio fischeri ES114]
Length = 421
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 148/305 (48%), Gaps = 53/305 (17%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V + + + AL G DI++ATPG + +S+ ++ D +K LVLDEAD
Sbjct: 116 IKTVSVFGGVSVNTQMLALRGGADILVATPGRLLDLISSNAVKL----DKVKTLVLDEAD 171
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+LS G+ ++L L A+ P+ Q LL SAT +V L + +L+NP + L + D
Sbjct: 172 RMLSLGFTEELNELLALAPKQKQTLLFSATFPEEVQTLTQALLNNPVEIQL-QSADASTV 230
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQK----KALIFTNTIDMAFRLKLFLEKFG 188
V + F ++ E+ +L L+QK +ALIF N + L L K G
Sbjct: 231 V----QRVFTVNKGEKTSVLA-------HLIQKNQWRQALIFVNAKNACNHLADKLAKRG 279
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
I + + + + Q +R +LE F AG D LIATD
Sbjct: 280 IAAEVFHGDKGQGARTRVLEAFKAGEIDVLIATDIA------------------------ 315
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D + + VINF++P++ A Y+HRIGR+GRA G ++SL+ ++
Sbjct: 316 ---------ARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDYHH 366
Query: 309 FEEIK 313
F+ I+
Sbjct: 367 FKIIE 371
>gi|426225486|ref|XP_004006897.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Ovis aries]
Length = 457
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P +VIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 140 ALAKKPHVVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 195
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 196 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 250
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 251 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 309
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 310 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 336
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 337 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 385
>gi|383854018|ref|XP_003702519.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Megachile rotundata]
Length = 453
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 143/287 (49%), Gaps = 44/287 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P I+IATPG + L +K F+ SLK LV+DEAD +L+ +E ++ + V
Sbjct: 133 LAKKPHILIATPGRLIDHLEN----TKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRV 188
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IPR + LL SAT + V KL++ L NP + + K + + K +QQ++I +
Sbjct: 189 IPRERRTLLFSATMTKKVQKLQRASLRNPVKVEV----STKYQTVEK-LQQYYIFIPVKF 243
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K +Y++ +L EL +IF T + R L L G + L+ ++ QN R+ L +
Sbjct: 244 KDVYLVHILN-ELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTK 302
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F A LI+TD RG+D +V V
Sbjct: 303 FKAKNRSILISTDVAS---------------------------------RGLDIPHVDIV 329
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
INF++P ++ Y+HR+GRT RA +G S++ V+ ++++++ I+ +
Sbjct: 330 INFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLI 376
>gi|208779218|ref|ZP_03246564.1| dead/deah box helicase domain protein [Francisella novicida FTG]
gi|208745018|gb|EDZ91316.1| dead/deah box helicase domain protein [Francisella novicida FTG]
Length = 441
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 140/282 (49%), Gaps = 43/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG + S ++ DSL VLDEAD +L G+ +DLK + ++P+ Q
Sbjct: 125 EILIATPGRLLDLYSQNAVKF----DSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT SS++ L L+NP ++ DV + + K Q+ + + + +K+ ++
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDKSNKINALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L +F +
Sbjct: 236 SLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RGID + VIN ++P
Sbjct: 295 NVLVATDIA---------------------------------ARGIDIAQLPCVINLDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 322 NVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|453086868|gb|EMF14909.1| DEAD-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 725
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 137/278 (49%), Gaps = 47/278 (16%)
Query: 35 PDIVIATPGCMPKCL--STGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPR 92
PDIVIATPG STG S +++ILVLDEAD +L G+ D+L + IP+
Sbjct: 356 PDIVIATPGRFIDLERNSTGFDVS-----TVEILVLDEADRMLEEGFADELNEILTKIPK 410
Query: 93 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCSERDK 150
Q +L SAT ++ VD L + L P L + D + + + VQ+F E+ +
Sbjct: 411 SRQTMLFSATMTTKVDDLIRSGLQRPVRLMV----DSQQQTVKGLVQEFVRLRPGREKKR 466
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
L Y++ L + ++ + +IF A R+++ G+K+A L+ L Q R++ +E F
Sbjct: 467 LAYLMYLCE-KVYTDRVIIFFRQKKEAHRVRVIFALAGLKAAELHGTLSQEQRINAIESF 525
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G +L+ATD L S RG+D K + TVI
Sbjct: 526 RTGKAGFLLATD----------------------------LAS-----RGLDIKGIETVI 552
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
N+E PQ+ Y+HR+GRT RA TG + +L + + K+
Sbjct: 553 NYEAPQSHEIYLHRVGRTARAGRTGRACTLAAEPDRKV 590
>gi|348569354|ref|XP_003470463.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Cavia porcellus]
Length = 455
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IVIATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 137 ALAKKPHIVIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 192
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 193 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 247
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 248 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 306
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 307 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 333
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 334 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 382
>gi|423686192|ref|ZP_17661000.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri SR5]
gi|371494260|gb|EHN69858.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri SR5]
Length = 421
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 148/305 (48%), Gaps = 53/305 (17%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V + + + AL G DI++ATPG + +S+ ++ D +K LVLDEAD
Sbjct: 116 IKTVSVFGGVSVNTQMLALRGGADILVATPGRLLDLISSNAVKL----DKVKTLVLDEAD 171
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+LS G+ ++L L A+ P+ Q LL SAT +V L + +L+NP + L + D
Sbjct: 172 RMLSLGFTEELNELLALAPKQKQTLLFSATFPEEVQALTQALLNNPVEIQL-QSADASTV 230
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQK----KALIFTNTIDMAFRLKLFLEKFG 188
V + F ++ E+ +L L+QK +ALIF N + L L K G
Sbjct: 231 V----QRVFTVNKGEKTSVLA-------HLIQKNQWRQALIFVNAKNACNHLADKLAKRG 279
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
I + + + + Q +R +LE F AG D LIATD
Sbjct: 280 IAAEVFHGDKGQGARTRVLEAFKAGEIDVLIATDIA------------------------ 315
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D + + VINF++P++ A Y+HRIGR+GRA G ++SL+ ++
Sbjct: 316 ---------ARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDYHH 366
Query: 309 FEEIK 313
F+ I+
Sbjct: 367 FKIIE 371
>gi|385792772|ref|YP_005825748.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676918|gb|AEB27788.1| ATP-dependent RNA helicase RhlE [Francisella cf. novicida Fx1]
Length = 442
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 140/282 (49%), Gaps = 43/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG + S ++ DSL VLDEAD +L G+ +DLK + ++P+ Q
Sbjct: 125 EILIATPGRLLDLYSQNAVKF----DSLNTFVLDEADRMLDMGFINDLKKIHKLLPKKLQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT SS++ L L+NP ++ DV + + K Q+ + + + +K+ ++
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDKSNKINALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L +F +
Sbjct: 236 SLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RGID + VIN ++P
Sbjct: 295 NVLVATDIA---------------------------------ARGIDIAQLPCVINLDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 322 NVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|302660698|ref|XP_003022025.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
gi|291185951|gb|EFE41407.1| hypothetical protein TRV_03842 [Trichophyton verrucosum HKI 0517]
Length = 474
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 146/289 (50%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 163 SLGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILK 218
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ + K + + + Q +I +
Sbjct: 219 VLPRERRTYLFSATLSSKVESLQRASLSNPLRVS---ISSNKYQTV-STLLQSYIFIPHK 274
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ +L E + +IFT T++ RL + L G + L+ +L Q++RL L
Sbjct: 275 YKDIYLVHILN-EFPGQTTIIFTRTVNETQRLSILLRALGFGAIPLHGQLSQSARLGALG 333
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G D L+ATD RG+D V
Sbjct: 334 KFRSGSRDILVATDV---------------------------------AARGLDIPAVDL 360
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G ++S+V+ E++I++ I++ +G
Sbjct: 361 VLNFDLPSDSKTYIHRVGRTARAGKSGRAISVVTQYEVEIWQRIEAALG 409
>gi|420246760|ref|ZP_14750191.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
gi|398073382|gb|EJL64557.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
Length = 411
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 135/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPAERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNSTATNVTQIVYEVAEGDKTGAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL LE+ G+ + ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRGLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRTQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLFSPHERKQLADIEKLI 376
>gi|441477761|dbj|BAM75193.1| vasa-like gene-2, partial [Pinctada fucata]
Length = 451
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 160/331 (48%), Gaps = 62/331 (18%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ + V
Sbjct: 137 LAKKPHIIIATPGRLIDHLEN----TKGFNLRALKFLVMDEADRILNMDFEQEVDKILKV 192
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK-----NVQQFWIS 144
IPR L SAT + V KL++ L NP VK EV K +QQ+++
Sbjct: 193 IPRERSTYLYSATMTKKVAKLQRASLQNP----------VKVEVSSKYQTVDKLQQYYLF 242
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
+ K +Y++++L EL ++FT+T R L L G+ + L+ ++ Q+ RL
Sbjct: 243 VPAKFKDVYLVSVLN-ELAGNSFMVFTSTCANTQRTALMLRNLGLTAIPLHGQMSQSKRL 301
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
L +F + LIATD RG+D
Sbjct: 302 GSLNKFKSKSRSILIATDVAS---------------------------------RGLDIP 328
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD----E 320
+V VINF++P ++ Y+HR+GRT RA +G +++ VS ++++++ I+ +G +
Sbjct: 329 HVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELYQRIEHLIGKKLPLYK 388
Query: 321 NEDSNIIAPFPLLAQNAVESLRYRAEDVAKS 351
E+ ++ L + E+ RY ++++S
Sbjct: 389 TEEQEVMQ----LMERVTEAQRYAKMEMSES 415
>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 411
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+++IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EVLIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNATATNVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI ++ ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIVELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+A YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|410627645|ref|ZP_11338382.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola mesophila KMM
241]
gi|410152719|dbj|GAC25151.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola mesophila KMM
241]
Length = 435
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 43/280 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + Q+ D L+ILVLDEAD +L G+ D+K + ++P Q
Sbjct: 125 DILVATPGRLLDLYN----QNAVRFDDLEILVLDEADRMLDMGFIHDIKKVLKLLPTKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S D+ L K +++NP EV + V+QF + K ++
Sbjct: 181 NLLFSATFSDDIRALAKGLVNNPV-----EVSVSPPNTTVEAVEQFVCPVDKNQKTPALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
++K Q + L+F+ T A R+ LE GI SA ++ Q +R L EF +G
Sbjct: 236 RMIKDNDWQ-QVLVFSRTKHGANRIAKQLEARGITSAAIHGNKSQGARTKALAEFKSGKV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + V+N+++P
Sbjct: 295 RALVATDIA---------------------------------ARGLDISQLPQVVNYDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
A YVHRIGRTGRA +G ++SLV+ DE + +I+ F
Sbjct: 322 NVAEDYVHRIGRTGRAGASGQAISLVTADEFPLLADIERF 361
>gi|444375654|ref|ZP_21174907.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
gi|443680157|gb|ELT86804.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
Length = 508
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 131/270 (48%), Gaps = 43/270 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + ++ FS L++LVLDEAD +L G+ D+K + ++P+ Q
Sbjct: 125 DILVATPGRLLDLYQQNAVK---FS-QLEVLVLDEADRMLDMGFFRDIKKILDLLPKNRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ L K +++NP E+ + V+Q WI +++ K +L
Sbjct: 181 NLLFSATFSDEIRDLAKGLVNNPV-----EISVTPANSTARTVEQ-WIYPADKKKKPAML 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L + K+ L+FT T A +L FL GI +A ++ Q++R L +F +G
Sbjct: 235 AKLIKDGDWKQVLVFTRTKHGANKLSHFLNDEGITAAPIHGNKSQSARTKALADFKSGDV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NFE+P
Sbjct: 295 RVLVATDI---------------------------------AARGIDIPQLPQVVNFEIP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
A YVHRIGRTGRA G +VSLV DE
Sbjct: 322 HVAEDYVHRIGRTGRAGEPGKAVSLVCADE 351
>gi|260769757|ref|ZP_05878690.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
gi|260615095|gb|EEX40281.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
Length = 397
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 137/283 (48%), Gaps = 45/283 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + Q + + ++++VLDEAD +L G+ D + + +PR Q
Sbjct: 125 DVLVATPGRLLDMYG----QRAVYFEEVEMVVLDEADRMLDMGFIDSINKIIDRLPRDAQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S V L K +++P+ E+ ++ N++Q W+ ++DK +L
Sbjct: 181 YLLFSATLSHKVRDLAKTAVNDPF-----EISIAANQASKSNIEQ-WLITVDKDKKSALL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ L E +ALIF T A +L LEK GI + ++ Q R+ +LE+F AG
Sbjct: 235 SHLITENNWDQALIFIETKHGAAKLASQLEKRGITAEAFHSGRSQAVRVQLLEDFKAGKI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVHTVINFEM 274
Y+IAT GV RGID + V+N+++
Sbjct: 295 KYMIAT----------------------------------GVGARGIDIHELSRVVNYDL 320
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
P A YVHRIGRTGRA G ++S VS D K I+S +G
Sbjct: 321 PFPADEYVHRIGRTGRANAKGEAISFVSKDNFKNLCMIESRLG 363
>gi|295107314|emb|CBL04857.1| Superfamily II DNA and RNA helicases [Gordonibacter pamelaeae
7-10-1-b]
Length = 445
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 147/316 (46%), Gaps = 44/316 (13%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A +L KG L+VV + +P + L+ DI++ATPG + + G ++ +
Sbjct: 124 ACTQLAKGS-GLRVVTVVGGVPYKGQLSKLSRGVDILVATPGRLHDLMERGDVKLRD--- 179
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
++ILVLDEAD +L G+ +K + A P Q LL SAT V + IL +P +
Sbjct: 180 -VEILVLDEADRMLDMGFWPTMKKIVAATPSSRQTLLFSATLDRKVMQSVSAILRDPAFV 238
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
+ G+ D ++QF + K +L LL E K+ ++FT+T A
Sbjct: 239 EVAHKGETSD-----TIEQFIVPVGSMQKA-SLLRLLLAERGSKRVIVFTDTKTRAEICT 292
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
L++ G ++ ++++ Q R L F+ G D L+ATD
Sbjct: 293 GQLKRAGFRAESIHSDKTQAQRKRALAAFSKGDVDVLVATDV------------------ 334
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
+ RGID ++ V+N+E+P+N YVHRIGRTGRA G S+S V
Sbjct: 335 ---------------LARGIDVPDIAYVVNYELPENPDDYVHRIGRTGRAGEAGCSISFV 379
Query: 302 SPDEMKIFEEIKSFVG 317
SP+ +I+ +G
Sbjct: 380 SPEAKAQLLDIEKLLG 395
>gi|221502154|gb|EEE27898.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 479
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 177/369 (47%), Gaps = 53/369 (14%)
Query: 9 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 67
G + + VV L + + ALA P +V+ +PG + L Q+K FS S+K+LV
Sbjct: 144 GTLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPGRVVDHLQ----QTKGFSLKSVKVLV 199
Query: 68 LDEADLLLSYGYEDDLKALSAVI--PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125
LDEAD LLS ++ L+ L + P Q +L SAT ++ V KL+K L P L E
Sbjct: 200 LDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMTTKVSKLQKASLKKPVKL---E 256
Query: 126 VGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 185
V D + ++QQ ++ + K ++ L L L ++FTNT A + LFL
Sbjct: 257 VNSKYD--VASHLQQHFLLVPFKLKHTHLAAAL-LHLSPSSVIVFTNTCANARKTALFLR 313
Query: 186 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK 245
G +S L+ ++ Q R+ L +F A L+AT+ V S
Sbjct: 314 HLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATE---------------VGS----- 353
Query: 246 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RG+D +V VINF++P ++ Y+HR+GRT RA TG ++++V+ +
Sbjct: 354 -------------RGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYD 400
Query: 306 MKIFEEIKSFVGDDENEDSNIIAPFPL--LAQNAVESLR-----YRAEDVAKSVTKIAVR 358
++ ++ I+ +G E + + A + L + +E+LR R D A V K A +
Sbjct: 401 VEAYQRIEHALGQKLEELTELTATEKVMPLHEKVLEALRSAELEAREADEAALVQKAAKK 460
Query: 359 ESRAQDLRN 367
+ A + R+
Sbjct: 461 KRGAGNKRS 469
>gi|340356606|ref|ZP_08679248.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
gi|339620533|gb|EGQ25102.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
Length = 526
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 138/285 (48%), Gaps = 46/285 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P+IV+ TPG + ++ L+ D+++ LVLDEAD +L+ G+ +D+ + A
Sbjct: 141 ALRNNPNIVVGTPGRILDHINRKTLKL----DNVQTLVLDEADEMLNMGFIEDINTILAS 196
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + + K+ + + NP I+ + E+ +N++QF++ ER+
Sbjct: 197 VPAERQTLLFSATMPAPIRKIAETFMKNPEIVKIK-----SKEMTVENIEQFFVKAHERE 251
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + LL + + A++F T L L G + ++ +L Q R+ +L +
Sbjct: 252 KFDVLSRLLNVHQ-PELAIVFGRTKRRVDELAHALSIRGYLAEGIHGDLTQAKRMSVLRQ 310
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F D L+ATD RG+D V V
Sbjct: 311 FKDNKIDVLVATDV---------------------------------AARGLDISGVTHV 337
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM---KIFEE 311
NF++PQ+ YVHRIGRTGRA +G +++ V+P EM +I EE
Sbjct: 338 YNFDIPQDPESYVHRIGRTGRAGKSGMAITFVTPREMGYLRIVEE 382
>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
Length = 408
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+++IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EVLIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L NP + + + NV Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRNPQTIEV-----ARSNATATNVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI ++ ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIVELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+A YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FSAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|386284070|ref|ZP_10061293.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
gi|385344973|gb|EIF51686.1| ATP-dependent RNA helicase [Sulfurovum sp. AR]
Length = 429
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 141/288 (48%), Gaps = 43/288 (14%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
AA+ +IVIATPG + L + FS +L+ L+LDEAD +L G+ D+K L
Sbjct: 119 AAIRKGVEIVIATPG---RLLDIAGQKGIDFS-ALECLILDEADRMLDMGFIHDIKKLMK 174
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
++P+ Q LL SAT S+D+ L + +L++P ++ + + D++ V F +R
Sbjct: 175 LMPQKRQTLLFSATFSADIKALAEGLLNDPILVEVARQNETADQI--NQVIHFVDKRRKR 232
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
+ L ++ + K K+ L+FT T A +L LE+ GI +A ++ Q +R L
Sbjct: 233 ELLSQLIKVKKW----KQVLVFTRTKHGANKLTKELEESGISAAAIHGNKSQGARTKALA 288
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
F A L+ATD RGID +
Sbjct: 289 AFKANGIRVLVATDIA---------------------------------ARGIDIDQLPH 315
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V+N+E+P YVHRIGRTGRA +G +VSLV DE ++ + I+ F+
Sbjct: 316 VVNYELPNVPEDYVHRIGRTGRAGKSGEAVSLVCIDEHELLKNIEKFI 363
>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
Length = 438
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 140/292 (47%), Gaps = 55/292 (18%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAV 89
L G DI++ATPG + ++Q + S S ++ILVLDEAD +L G+ D++ +
Sbjct: 128 LRGGVDILVATPGRL-----LDLVQQNAVSLSQVEILVLDEADRMLDMGFIHDIRRILDK 182
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWIS 144
+P Q LL SAT S+ + +L +LHNP IL EV P+N V+Q
Sbjct: 183 LPTKRQNLLFSATFSNQIKQLANSLLHNPTIL----------EVAPRNSASQQVKQLIHF 232
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
+R K + L+ E Q + L+FT T A RL L K GIK+ ++ Q +R
Sbjct: 233 VDKRRKAELLSYLIGSENWQ-QVLVFTRTKYGANRLTEHLIKDGIKAMAIHGNKSQGART 291
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
L +F +G L+ATD RG+D +
Sbjct: 292 RALADFKSGAIRVLVATDIA---------------------------------ARGLDIE 318
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+ V+N+E+P A YVHRIGRTGRA TG +VSLV+ DE + I+ +
Sbjct: 319 QLPYVVNYELPNVAEDYVHRIGRTGRAAATGLAVSLVAIDEQSLLTAIERLL 370
>gi|294140317|ref|YP_003556295.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293326786|dbj|BAJ01517.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 431
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 153/324 (47%), Gaps = 62/324 (19%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+LK+ + + A+ A+ G D+++ATPG + +S+ ++ D +K LVLDEA
Sbjct: 117 RLKIEAVFGGVSANTQMLAMRGGADVLVATPGRLLDLISSNAIKL----DDVKTLVLDEA 172
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL--PEVGDV 129
D +LS G+ ++L + A++P+ Q LL SAT +V L +L +P + + E +
Sbjct: 173 DRMLSLGFTEELNQVLALLPKHKQTLLFSATFPEEVKTLTDKLLSSPVEIQIQSEEQSTL 232
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
K +V N R + +L L E ++ L+F + + RL+ L K GI
Sbjct: 233 KQQVYTVN----------RTRKTALLAHLIKENNWRQVLVFASAKNTCNRLEQKLAKAGI 282
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ I +++ Q +R +LE F G LIATD
Sbjct: 283 AAQIFHSDKSQGARTKVLEAFKNGETHVLIATDI-------------------------- 316
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RGID + + VIN+E+P++ Y+HRIGR+GRA G ++SL+S DE + F
Sbjct: 317 -------AARGIDIEKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQHF 369
Query: 310 -------------EEIKSFVGDDE 320
E+++ F DDE
Sbjct: 370 KLIEKKNKIKLDREQVEGFEADDE 393
>gi|238594966|ref|XP_002393631.1| hypothetical protein MPER_06605 [Moniliophthora perniciosa FA553]
gi|215461407|gb|EEB94561.1| hypothetical protein MPER_06605 [Moniliophthora perniciosa FA553]
Length = 182
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 39/166 (23%)
Query: 140 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199
Q+ + CSE DK L +LKL+L++ K ++F N +D ++RLKLFLE+F IKS +LN+ELP
Sbjct: 16 QYAVRCSEVDKFLLTYVMLKLKLIKGKCILFVNDVDRSYRLKLFLEQFSIKSCVLNSELP 75
Query: 200 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD-------------------- 239
NSR H ++EFN G++DY+IATD++ K +Q ++ G D
Sbjct: 76 LNSRYHTVQEFNKGVYDYIIATDESGVKGTEQDEDSGGEDDVEEFTSTQRDPETTESSEE 135
Query: 240 ----SRKSK---------------KHPKAKLDSEFGVVRGIDFKNV 266
SRK K KH K D E+GV RG+DF +V
Sbjct: 136 LNSNSRKRKRAEASLASDSTSRKRKHRKGGSDKEYGVTRGVDFIDV 181
>gi|322795370|gb|EFZ18163.1| hypothetical protein SINV_10215 [Solenopsis invicta]
Length = 410
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 44/305 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
+K V L M L P I+IATPG + L +K F+ LK LV+DEA
Sbjct: 92 VKTVVLVGGMDMHAQGMILEKKPHIIIATPGRLVDHLEN----TKGFNLRQLKFLVMDEA 147
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L+ +E ++ + VIPR + LL SAT + V KL++ L NP + + K
Sbjct: 148 DRILNMDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLRNPVRVEV----STKY 203
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ + K +QQ++I + K +Y++ +L EL +IF T + R L L G +
Sbjct: 204 QTVEK-LQQYYIFIPVKFKDVYLVHILN-ELAGNSFMIFCGTCNNTVRTALLLRNLGFTA 261
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
L+ ++ QN R+ L +F A LI+TD
Sbjct: 262 VPLHGQMSQNKRIAALTKFKAKNRSILISTDVAS-------------------------- 295
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++ V+ ++++++
Sbjct: 296 -------RGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQR 348
Query: 312 IKSFV 316
I+ +
Sbjct: 349 IEQLI 353
>gi|375107400|ref|ZP_09753661.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374668131|gb|EHR72916.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 492
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 141/281 (50%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+++IATPG L + + ++ +VLDEAD +L G+ DL+ + + +PR Q
Sbjct: 151 EVLIATPGR----LLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPRQRQ 206
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ +L L +P ++ + + NV+Q + S ++ DK ++
Sbjct: 207 TLLFSATFSPEIKRLANSYLQDPVLVEV-----ARPNATATNVEQRFYSVTDDDKRRVVM 261
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ + +A++F N+ A RL E+ G+K++ L+ + Q+ RL L+ F G
Sbjct: 262 QLLRNRSLS-QAIVFVNSKLGAARLARSFERDGLKTSALHGDKSQDERLKSLDAFKRGDV 320
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D ++ V NF++P
Sbjct: 321 ELLVATD---------------------------------VAARGLDIADLPAVFNFDVP 347
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G +V+LV+ D+ ++ +I+ +
Sbjct: 348 FNAEDYVHRIGRTGRAGASGLAVTLVTRDDARLISDIEKLL 388
>gi|237845351|ref|XP_002371973.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|61676032|gb|AAX51681.1| DEAD box RNA helicase [Toxoplasma gondii]
gi|211969637|gb|EEB04833.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
Length = 479
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 109/369 (29%), Positives = 177/369 (47%), Gaps = 53/369 (14%)
Query: 9 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 67
G + + VV L + + ALA P +V+ +PG + L Q+K FS S+K+LV
Sbjct: 144 GTLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPGRVVDHLQ----QTKGFSLKSVKVLV 199
Query: 68 LDEADLLLSYGYEDDLKALSAVI--PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125
LDEAD LLS ++ L+ L + P Q +L SAT ++ V KL+K L P L E
Sbjct: 200 LDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMTTKVSKLQKASLKKPVKL---E 256
Query: 126 VGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 185
V D + ++QQ ++ + K ++ L L L ++FTNT A + LFL
Sbjct: 257 VNSKYD--VASHLQQHFLLVPFKLKHTHLAAAL-LHLSPSSVIVFTNTCANARKTALFLR 313
Query: 186 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK 245
G +S L+ ++ Q R+ L +F A L+AT+ V S
Sbjct: 314 HLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATE---------------VGS----- 353
Query: 246 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RG+D +V VINF++P ++ Y+HR+GRT RA TG ++++V+ +
Sbjct: 354 -------------RGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYD 400
Query: 306 MKIFEEIKSFVGDDENEDSNIIAPFPL--LAQNAVESLR-----YRAEDVAKSVTKIAVR 358
++ ++ I+ +G E + + A + L + +E+LR R D A V K A +
Sbjct: 401 VEAYQRIEHALGQKLEELTELTATEKVMPLHEKVLEALRSAELEAREADEAALVQKAAKK 460
Query: 359 ESRAQDLRN 367
+ A + R+
Sbjct: 461 KRGAGNKRS 469
>gi|332030497|gb|EGI70185.1| Putative ATP-dependent RNA helicase DDX47 [Acromyrmex echinatior]
Length = 448
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 146/312 (46%), Gaps = 54/312 (17%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ +K V L M L P I+IATPG + L +K F+ LK LV+D
Sbjct: 113 IGVKTVVLVGGMDMHAQGMILEKKPHIIIATPGRLVDHLEN----TKGFNLRQLKFLVMD 168
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD +L+ +E ++ + VIPR + LL SAT + V KL++ L NP V
Sbjct: 169 EADRILNMDFEVEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLRNP----------V 218
Query: 130 KDEVIPK-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
K EV K +QQ++I + K +Y++ +L EL +IF T + R L L
Sbjct: 219 KVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILN-ELAGNSFMIFCGTCNNTVRTALLL 277
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244
G + L+ ++ QN R+ L +F A LI+TD
Sbjct: 278 RNLGFTAVPLHGQMTQNKRIAALTKFKAKNRSILISTDVAS------------------- 318
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++ V+
Sbjct: 319 --------------RGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQY 364
Query: 305 EMKIFEEIKSFV 316
++++++ I+ +
Sbjct: 365 DVELYQRIEQLI 376
>gi|110598174|ref|ZP_01386451.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
DSM 13031]
gi|110340188|gb|EAT58686.1| Helicase-like:DEAD/DEAH box helicase-like [Chlorobium ferrooxidans
DSM 13031]
Length = 418
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 148/312 (47%), Gaps = 45/312 (14%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
+AL DIVIATPG + ++ G L + ++I VLDEAD +L G+ D+K + A
Sbjct: 119 SALRNGVDIVIATPGRLLDLMNQGFLNLRD----VEIFVLDEADRMLDMGFIHDIKKVLA 174
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+P+ Q L SAT ++ +L ILHNP +++ + D +I +++ +++ +
Sbjct: 175 VLPKKKQSLFFSATLPPEIVRLAGTILHNPSEVSVTPISSTVD-IIQQHI--YFVDKGNK 231
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
+ LL + +LK + + K AL+FT T A ++ FL I++ ++ QN+R L
Sbjct: 232 NSLL--VDILKDQSI-KTALVFTRTKHGADKVVKFLSHHNIRAEAIHGNKAQNARQRALS 288
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
F L+ATD RGID +
Sbjct: 289 NFKNQTTRVLVATDIA---------------------------------ARGIDVDELEY 315
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
VINFE+ A YVHRIGRTGRA G + S +E + +I+ +G N
Sbjct: 316 VINFEISNIAETYVHRIGRTGRAGAKGTAYSFCDAEEKEYLRDIEKLIGKKIPVIDN--H 373
Query: 329 PFPLLAQNAVES 340
PFPL+ N V++
Sbjct: 374 PFPLIDHNPVKA 385
>gi|404448789|ref|ZP_11013781.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
gi|403765513|gb|EJZ26391.1| DNA/RNA helicase [Indibacter alkaliphilus LW1]
Length = 398
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 45/283 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + ++ + + L+I VLDEAD +L G+ D+K L +IP Q
Sbjct: 124 DILVATPGRLLDLINQKYIDLRH----LEIFVLDEADRMLDMGFIHDVKKLINIIPTKRQ 179
Query: 96 CLLMSATSSSDVDKLKKLILHNP-YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
L SAT S++ KL +L NP Y+ P V+ K Q+ + + ++ DK +
Sbjct: 180 TLFFSATMPSEIQKLADTLLKNPKYVEVTPPSSTVE-----KITQKLYFT-NKNDKAKLL 233
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+ LL+ E + AL+F T + ++ L++ GIK+A ++ QN+R + L +F G
Sbjct: 234 IHLLEKENI-GSALVFGRTKHGSDKVVKLLQREGIKAAAIHGNKSQNARQNALNDFKNGK 292
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ATD RGID + TV N+++
Sbjct: 293 IRILVATDI---------------------------------AARGIDIDELATVFNYDL 319
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
P YVHRIGRTGRA N+G ++S D MK + +I+ +G
Sbjct: 320 PNIPETYVHRIGRTGRAGNSGVAISFADQDTMKEYRDIEKLIG 362
>gi|389630538|ref|XP_003712922.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
gi|351645254|gb|EHA53115.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
Length = 799
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 148/308 (48%), Gaps = 54/308 (17%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
I+ C L V L+ + S+LR PD++IATPG + S SF+ D+
Sbjct: 364 IKFC-----LAVGGLSLKVQESELRLR----PDVIIATPGRFIDHMRN----SASFAVDT 410
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
++ILVLDEAD +L G+ D+L + +P+ Q +L SAT +S VD L ++ L+ P L
Sbjct: 411 VEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRLM 470
Query: 123 LPEVGDVKDEVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
+ D + + + Q+F E ++ Y++ L K L ++ +IF +A
Sbjct: 471 V----DSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCK-NLYTERVIIFFRQKKIAHHA 525
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
++ G+ A L+ + Q R+ +E F G +L+ATD
Sbjct: 526 RIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATD------------------ 567
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
L S RG+D K V TVIN+E PQ+ YVHR+GRT RA +G +++L
Sbjct: 568 ----------LAS-----RGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITL 612
Query: 301 VSPDEMKI 308
+ + K+
Sbjct: 613 AAEPDRKV 620
>gi|355683299|gb|AER97081.1| DEAD box polypeptide 47 [Mustela putorius furo]
Length = 454
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P ++IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 137 ALAKKPHVIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 192
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 193 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 247
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 248 FKDTYLVYILN-ELAGNSFIIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 306
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 307 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 333
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 334 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 382
>gi|336373869|gb|EGO02207.1| hypothetical protein SERLA73DRAFT_178026 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386778|gb|EGO27924.1| hypothetical protein SERLADRAFT_462194 [Serpula lacrymans var.
lacrymans S7.9]
Length = 449
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 54/305 (17%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 76
+ +P ALA P +V+ATPG + L ++K F +LK LVLDEAD LL
Sbjct: 117 IVGGVPTVPQAVALAKKPHVVVATPGRLLWHLQ----ETKGFGLANLKFLVLDEADRLLD 172
Query: 77 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 136
+ + + VIP+ L SAT +S V KL++ L NP V+ EV K
Sbjct: 173 MDFGQVIDDILKVIPKQRTTYLFSATMTSKVAKLQRASLKNP----------VRVEVAGK 222
Query: 137 -----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ Q+++ +DK + ++ L+ L Q +IFT T+ A RL + L G +
Sbjct: 223 YQTVSTLLQYYLFIPLKDKDVNLVYLVN-ALAQNSIIIFTRTVHDAARLTIVLRTLGFSA 281
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
L+ +L Q+ RL L +F +G L+ATD
Sbjct: 282 VPLHGQLSQSQRLGALAKFKSGGRKILVATDVAS-------------------------- 315
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++LV+ ++++ +
Sbjct: 316 -------RGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELVQR 368
Query: 312 IKSFV 316
I+S +
Sbjct: 369 IESVI 373
>gi|152013519|sp|A4QYM6.1|DRS1_MAGO7 RecName: Full=ATP-dependent RNA helicase DRS1
gi|440472865|gb|ELQ41697.1| ATP-dependent RNA helicase drs-1 [Magnaporthe oryzae Y34]
gi|440482949|gb|ELQ63394.1| ATP-dependent RNA helicase drs-1 [Magnaporthe oryzae P131]
Length = 790
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 148/308 (48%), Gaps = 54/308 (17%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
I+ C L V L+ + S+LR PD++IATPG + S SF+ D+
Sbjct: 355 IKFC-----LAVGGLSLKVQESELRLR----PDVIIATPGRFIDHMRN----SASFAVDT 401
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
++ILVLDEAD +L G+ D+L + +P+ Q +L SAT +S VD L ++ L+ P L
Sbjct: 402 VEILVLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRLM 461
Query: 123 LPEVGDVKDEVIPKNVQQF--WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
+ D + + + Q+F E ++ Y++ L K L ++ +IF +A
Sbjct: 462 V----DSQKKTVVTLTQEFVRLRPGREEKRMGYLVYLCK-NLYTERVIIFFRQKKIAHHA 516
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
++ G+ A L+ + Q R+ +E F G +L+ATD
Sbjct: 517 RIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATD------------------ 558
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
L S RG+D K V TVIN+E PQ+ YVHR+GRT RA +G +++L
Sbjct: 559 ----------LAS-----RGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITL 603
Query: 301 VSPDEMKI 308
+ + K+
Sbjct: 604 AAEPDRKV 611
>gi|343509249|ref|ZP_08746533.1| DNA and RNA helicase [Vibrio scophthalmi LMG 19158]
gi|342805016|gb|EGU40296.1| DNA and RNA helicase [Vibrio scophthalmi LMG 19158]
Length = 399
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 152/320 (47%), Gaps = 56/320 (17%)
Query: 10 QVQLKVVQLTSSMPASDL-----------RAALAGPPDIVIATPGCMPKCLSTGVLQSKS 58
QV+ KV ++P + L + AL D+++ATPG + Q
Sbjct: 88 QVEEKVRDYGQNLPLTSLAMYGGVDEKSQKQALIEGVDVLVATPGRLLDLYG----QHAV 143
Query: 59 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
D +++LVLDEAD +L G+ +D+ + +P Q LL SAT S+ V +L K ++NP
Sbjct: 144 HFDEVEVLVLDEADRMLDMGFIEDINKILDRLPTDIQHLLFSATLSNKVRELAKTAVYNP 203
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
+ E+ ++ K+++Q W+ ++DK +L+ L E + LIF T A
Sbjct: 204 F-----EISIAANQASKKSIEQ-WLISVDKDKKSALLSHLIKENDWDQTLIFIETKHGAA 257
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 238
+L LEK GI++ ++ Q R +L++F AG Y+IAT
Sbjct: 258 KLAQQLEKRGIEAEAFHSGRSQAVRSQLLQDFKAGKIKYMIAT----------------- 300
Query: 239 DSRKSKKHPKAKLDSEFGV-VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
GV RGID + + VIN+++P A YVHRIGRTGRA G +
Sbjct: 301 -----------------GVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADARGEA 343
Query: 298 VSLVSPDEMKIFEEIKSFVG 317
+S VS D K I+S +G
Sbjct: 344 ISFVSRDNFKNLCMIESRLG 363
>gi|440638773|gb|ELR08692.1| ATP-dependent rRNA helicase rrp3 [Geomyces destructans 20631-21]
Length = 485
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 150/295 (50%), Gaps = 45/295 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 173 ALGKKPHIIVATPGRLLDHLE----NTKGFSLRALKYLVMDEADRLLDLDFGPILDKILK 228
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSE 147
V+PR + L SAT SS V+ L++ L +P + ++ K + + +Q + +I
Sbjct: 229 VLPRERRTYLFSATMSSKVESLQRASLRDPLRV---QISTNKYQTVSTLLQSYLFIPHPH 285
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+D Y++ LL + + A++FT T++ RL + L G + L+ +L Q++RL L
Sbjct: 286 KDT--YLIYLLN-DFAGQSAIVFTRTVNETQRLAILLRTLGFGAIPLHGQLSQSARLGAL 342
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F AG + L+ATD RG+D +V
Sbjct: 343 NKFRAGSREILVATDVA---------------------------------ARGLDIPSVD 369
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
V+N+++P ++ Y+HR+GRT RA +G ++S+V+ +++I+ I++ +G +NE
Sbjct: 370 VVLNYDLPPDSKTYIHRVGRTARAGKSGHAISIVTQYDVEIWLRIEAALGMKQNE 424
>gi|239825779|ref|YP_002948403.1| DEAD/DEAH box helicase [Geobacillus sp. WCH70]
gi|239806072|gb|ACS23137.1| DEAD/DEAH box helicase domain protein [Geobacillus sp. WCH70]
Length = 466
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 43/277 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ TPG + ++ L+ D++ +VLDEAD +L+ G+ DD++A+ +
Sbjct: 116 ALKKRPHIIVGTPGRIIDHINRKTLRL----DNVHTVVLDEADEMLNMGFIDDIEAILSN 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT + ++ + ++ P+I+ + K+ +P N+QQ+++ E+
Sbjct: 172 VPEKRQTLLFSATMPEPIRRIAERFMNEPHIVKV----KAKEMTVP-NIQQYYLEVQEKK 226
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + LL ++ + A++F T L L G + ++ +L Q RL +L +
Sbjct: 227 KFDILTRLLDIQ-APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRK 285
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F G + L+ATD RG+D V V
Sbjct: 286 FKEGSIEILVATDVA---------------------------------ARGLDISGVTHV 312
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
NF++PQ+ YVHRIGRTGRA TG +++ V+P E+
Sbjct: 313 YNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREI 349
>gi|340522166|gb|EGR52399.1| predicted protein [Trichoderma reesei QM6a]
Length = 482
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L ++K FS SLK LV+DEAD LL + + +
Sbjct: 172 ALGKKPHIIVATPGRLVDHLE----KTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILK 227
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
IPR + L SAT SS V+ L++ L +P ++ V K + + + Q +I +
Sbjct: 228 FIPRERRTYLFSATLSSKVESLQRASLRDPVRVS---VSSSKYQTV-STLLQHYILVPHK 283
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ L+ E K +IFT T+ R+ + L G + L+ +L Q+SRL L
Sbjct: 284 RKDTYLIYLVN-EFAGKSIIIFTRTVFETQRIAILLRTLGFGAIPLHGQLSQSSRLGALN 342
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F G + L+ATD RG+D V
Sbjct: 343 KFKGGSREILVATDVA---------------------------------ARGLDIPAVDV 369
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+N ++PQ++ Y+HR+GRT RA +G ++++V+ +++I++ I++ +G
Sbjct: 370 VLNLDLPQDSKTYIHRVGRTARAGKSGIAINIVTQYDVEIYQRIEAALG 418
>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 507
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/299 (30%), Positives = 143/299 (47%), Gaps = 47/299 (15%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 76
L M LA P I++ TPG + L +K F +LK LV+DEAD LLS
Sbjct: 184 LVGGMDVMQQAMVLARKPHIIVGTPGRVMYHLE----NTKGFHLKALKFLVMDEADRLLS 239
Query: 77 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 136
+E+++ + VIP+ L SAT +S V KL+K L NP + +V K +
Sbjct: 240 MDFEEEINKILKVIPKNRNTYLFSATMTSKVAKLQKASLVNPIKV---QVASTKYSTVDT 296
Query: 137 NVQQF-WISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 194
VQQ+ +I +D L YIL EL A++F T + RL + L G+ + +
Sbjct: 297 LVQQYCFIPYQHKDCYLTYILN----ELSGNSAIVFVATCAASNRLSVMLRNLGLGAIPI 352
Query: 195 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 254
N + Q RL L +F + + + L+ATD
Sbjct: 353 NGNMDQTKRLASLNKFKSSVKNILVATDVA------------------------------ 382
Query: 255 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+D +V V+N+++P N+ YVHR+GRT RA +G +++LV+ ++++++ I+
Sbjct: 383 ---ARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYDVEVYQRIE 438
>gi|340719056|ref|XP_003397973.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like [Bombus
terrestris]
Length = 458
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 143/288 (49%), Gaps = 44/288 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P I+IATPG + L +K F+ SLK LV+DEAD +L+ +E ++ + V
Sbjct: 138 LAKKPHILIATPGRLVDHLEN----TKGFNLRSLKFLVMDEADRILNMDFEVEVDKILRV 193
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IPR + LL SAT + V KL++ L NP + + K + + K +QQ+++ +
Sbjct: 194 IPRERRTLLFSATMTKKVQKLQRASLRNPVKVEV----STKYQTVEK-LQQYYVFIPVKF 248
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K +Y++ +L EL +IF T + R L L G + L+ ++ QN R+ L +
Sbjct: 249 KDVYLVHILN-ELAGNSFMIFCATCNNTVRTALLLRNLGFTAVPLHGQMSQNKRIAALTK 307
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F A LI+TD RG+D +V V
Sbjct: 308 FKAKNRSILISTDVAS---------------------------------RGLDIPHVDIV 334
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
INF++P ++ Y+HR+GRT RA +G S++ V+ ++++++ I+ +
Sbjct: 335 INFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQYDVELYQRIEQLIS 382
>gi|334348319|ref|XP_001371236.2| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Monodelphis domestica]
Length = 459
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P ++IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 139 ALAKKPHVIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 194
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
+IPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 195 LIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 249
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL ++F +T + R L L G + L+ ++ QN RL L
Sbjct: 250 FKDSYLVYILN-ELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLN 308
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 309 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 335
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G S++ V+ ++++++ I+ +G
Sbjct: 336 VVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRIEHLIG 384
>gi|237831677|ref|XP_002365136.1| ATP-dependent nucleolar RNA helicase, putative [Toxoplasma gondii
ME49]
gi|211962800|gb|EEA97995.1| ATP-dependent nucleolar RNA helicase, putative [Toxoplasma gondii
ME49]
gi|221506698|gb|EEE32315.1| ATP-dependent nucleolar RNA helicase, putative [Toxoplasma gondii
VEG]
Length = 888
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 116/197 (58%), Gaps = 12/197 (6%)
Query: 34 PPDIVIATPGCMPKCLST--GVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
PP ++I TP + + G KS +LK+LV DEADLLLS+G+E+++ L A +
Sbjct: 317 PPSVLIGTPAGVVSYMGKLDGSASVKSLLQRNLKVLVADEADLLLSFGFENEMNRLLACL 376
Query: 91 P----RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 146
P R Q LL+SAT + +V KL++++LH ++ E+ D + + +F++S
Sbjct: 377 PATAERHYQALLLSATLNEEVAKLQQMLLHKAVMV---EIDDTLQQA-SSQLSEFYLSLP 432
Query: 147 ER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
+ DK + + LKL LV +K LIFT+ + A+ +++FLE+FGI +L+ L SR
Sbjct: 433 KAGDKWVVLYAFLKLNLVPRKCLIFTSGVSSAYGVRIFLERFGIGCGVLSPTLSIESRQS 492
Query: 206 ILEEFNAGLFDYLIATD 222
+++ FN GL + LI TD
Sbjct: 493 LIQAFNKGLLEILITTD 509
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 123/218 (56%), Gaps = 19/218 (8%)
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS---PDEMKI 308
D EFG RG+D ++V V++F+MP++ GY+HRIGR GR G SV LVS E+ +
Sbjct: 598 DDEFGSHRGLDLQSVACVLSFDMPRSIRGYIHRIGRAGRGGAPGISVCLVSQAAAREVLL 657
Query: 309 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
++ ++ + S + P L Q+ VE RYR EDV + VTK + A++L+ E
Sbjct: 658 LHKLVQLRRENNDAGSTALKPLSLRLQD-VECFRYRVEDVCRGVTKRVIAALVAKELQQE 716
Query: 369 ILNSEKLKAHFEVNPKDLDLLK------HDKDLSKKPPASHLRDVPDYLLDAKT----QE 418
+L S K++ F+ NP+D ++L+ D+ L+ + HL+ +P YLL A+T +
Sbjct: 717 VLRSRKMRDFFKRNPRDEEVLRAACKQLKDRALAGR---GHLQHLPSYLL-AQTPPAQKT 772
Query: 419 ACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 456
A ++ A+ A G K + + G +R+ DPLKSF A
Sbjct: 773 AVQLAVEAQTARGPKATQEKLGVKRRTL-VDPLKSFRA 809
>gi|348030348|ref|YP_004873034.1| DEAD/DEAH box helicase [Glaciecola nitratireducens FR1064]
gi|347947691|gb|AEP31041.1| DEAD box helicase [Glaciecola nitratireducens FR1064]
Length = 421
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 138/288 (47%), Gaps = 53/288 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + ++ FS+ L+ILVLDEAD +L G+ D+K + A++P+ Q
Sbjct: 125 DVLVATPGRLMDLYQQKAVK---FSE-LEILVLDEADRMLDMGFIHDIKKIMALLPKKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT S D+ KL K I++NP V+ V PKN V+Q I + K
Sbjct: 181 NLLFSATFSDDIRKLAKTIVNNP----------VEISVNPKNSTAKAVEQVIIPVDKTSK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+ L+K E + L+F T A RL FL K I ++ ++ Q +R L +F
Sbjct: 231 NKLLSHLIK-ENNWHQVLVFCRTKHGADRLAKFLIKQNITASAIHGNKSQGARTRALADF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L ATD RGID + ++
Sbjct: 290 KSGGVQVLAATDIA---------------------------------ARGIDISELPQIV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
NF++P A YVHRIGRTGRA TG + S + ++ K EI+S +G+
Sbjct: 317 NFDLPNIAEDYVHRIGRTGRAGATGHAYSFATIEDKKNISEIQSLIGE 364
>gi|374997699|ref|YP_004973198.1| DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
gi|357216065|gb|AET70683.1| DNA/RNA helicase, superfamily II [Desulfosporosinus orientis DSM
765]
Length = 500
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/290 (28%), Positives = 137/290 (47%), Gaps = 49/290 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I++ATPG + + ++ + +KILVLDEAD +L+ G+ DD++ +
Sbjct: 116 ALKKRPHIIVATPGRLMDHMRRKTIRL----NDIKILVLDEADEMLNMGFLDDIETILKE 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER- 148
+P Q LL SAT + + + P ++++ G V +++Q ++ +ER
Sbjct: 172 VPEERQTLLFSATMPRQIQNIAHRFMQEPQLISIKATG-----VTVSDIEQHYVEVTERL 226
Query: 149 --DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
D L IL + EL +++F T L L K G + ++ +L QN R +
Sbjct: 227 KFDVLSRILDIQSPEL----SIVFARTKKRVDELAEALSKRGYSAEGIHGDLTQNKRDSV 282
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L +F G + L+ATD RG+D V
Sbjct: 283 LRQFKDGTIEVLVATDVA---------------------------------ARGLDISGV 309
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V NF++PQ+ YVHR+GRTGRA +G +++LV+P E+ + I+S +
Sbjct: 310 THVFNFDIPQDPESYVHRVGRTGRAGKSGLAITLVTPREIGMLRLIESVI 359
>gi|357008100|ref|ZP_09073099.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 529
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 133/282 (47%), Gaps = 53/282 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P I+I TPG + ++ ++ D ++ ++LDEAD +L G+ +D++++ +
Sbjct: 116 ALRKKPQIIIGTPGRLLDHINRKTIKL----DDVQTVILDEADEMLDMGFMEDIQSILKL 171
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ-----QFWIS 144
+P Q +L SAT ++ KL + L NP ++ VIPK V Q +I
Sbjct: 172 VPDERQTMLFSATMPINIQKLAQQFLSNPEHVS----------VIPKQVSAPLIDQSYIE 221
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
ER K + L+ +E A+IF T L L+K G + L+ +L QN R
Sbjct: 222 LHERQKFEALCRLIDME-APDLAIIFGRTKRRVDELSEALQKRGYTAEGLHGDLSQNQRD 280
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
+++ +F G D L+ATD RG+D
Sbjct: 281 NVMRKFRDGSIDVLVATDVA---------------------------------ARGLDVS 307
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
V VINF++PQ+ YVHRIGRTGRA GA+ + V+P E+
Sbjct: 308 GVTHVINFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREI 349
>gi|390945021|ref|YP_006408782.1| DNA/RNA helicase [Belliella baltica DSM 15883]
gi|390418449|gb|AFL86027.1| DNA/RNA helicase, superfamily II [Belliella baltica DSM 15883]
Length = 406
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 146/287 (50%), Gaps = 49/287 (17%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSD--SLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
DI++ATPG + ++ + F D L+ VLDEAD +L G+ D+K + A++P
Sbjct: 124 DILVATPGRLLDLIN------QKFIDLRQLQFFVLDEADRMLDMGFIHDVKKIIALLPAK 177
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLL- 152
Q L SAT ++ KL ++L NP + + D++ + + ++ + +++ KLL
Sbjct: 178 RQTLFFSATMPPEIQKLADVLLRNPSKVEVTPPSSTVDKI---DQRLYYTNKNDKPKLLQ 234
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
++L ++ + AL+FT T A ++ FL + G+++A ++ QN+R + L++F A
Sbjct: 235 HLLDAYRI----RTALVFTRTKHGADKVVKFLARDGVRAAAIHGNKSQNARQNALKDFKA 290
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G L+ATD RGID + VIN+
Sbjct: 291 GKLQVLVATDIA---------------------------------ARGIDIDELAHVINY 317
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
++P + YVHRIGRTGRA NTG ++S+ ++ K ++I+ +G D
Sbjct: 318 DLPNVSETYVHRIGRTGRAGNTGIAISICDEEQRKELKDIEKLIGKD 364
>gi|83645104|ref|YP_433539.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
gi|83633147|gb|ABC29114.1| ATP-dependent RNA helicase [Hahella chejuensis KCTC 2396]
Length = 393
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/284 (32%), Positives = 136/284 (47%), Gaps = 47/284 (16%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + L++ + + D +++LVLDEAD +L G+ D+K + PR Q
Sbjct: 141 DLLIATPGRLLDHLTSADI----YLDQVEVLVLDEADRMLDMGFIPDVKRIVRATPRERQ 196
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ--FWISCSERDKLLY 153
LL SAT S D+ L + P EV D + K V Q + + S + KLL
Sbjct: 197 TLLFSATFSEDIKNLARRWTEEPV-----EVMLAVDHLPAKTVDQRVYMVESSAKRKLL- 250
Query: 154 ILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+ LLK + ++ ++F N D L L + IK+ +++ ELPQ RL LE F G
Sbjct: 251 -VNLLK-DSETRRVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLKTLERFRRG 308
Query: 214 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 273
F L+AT D + G H+D V V+N+
Sbjct: 309 DFRVLVAT--------DVAGRGLHID-------------------------GVTHVVNYN 335
Query: 274 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+P + YVHRIGRTGRA TG S+S D+ + E++ ++G
Sbjct: 336 LPDDPEDYVHRIGRTGRAGATGVSISFACEDDSFLIPELEKYLG 379
>gi|441504834|ref|ZP_20986826.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441427416|gb|ELR64886.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 415
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 137/283 (48%), Gaps = 45/283 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + Q + +++LVLDEAD +L G+ +D+ + +P Q
Sbjct: 125 DILVATPGRLLDMYT----QRAVHFEEVEMLVLDEADRMLDMGFIEDINKIIERLPEDRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S V L K ++NP EV D + Q W+ ++DK +L
Sbjct: 181 NLLFSATLSKQVRALAKTAIYNPV-----EVSITPDSKAKPQIDQ-WLITVDKDKKSSLL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ L E +ALIF T A +L LEK GIK+ ++ Q R +LE+F +G
Sbjct: 235 SHLIKENQWDQALIFIETKHGAAKLVSQLEKRGIKAESFHSGRSQAVRAQLLEDFKSGKL 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVHTVINFEM 274
+ L+AT GV RGID +N+ VIN+++
Sbjct: 295 NLLVAT----------------------------------GVAARGIDIENLSRVINYDL 320
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
P A YVHRIGRTGRA +G ++S VS D+ K I+S +G
Sbjct: 321 PYPADDYVHRIGRTGRAGASGEAISFVSKDDFKNLCAIESRLG 363
>gi|343494207|ref|ZP_08732476.1| ATP-dependent RNA helicase [Vibrio nigripulchritudo ATCC 27043]
gi|342825408|gb|EGU59900.1| ATP-dependent RNA helicase [Vibrio nigripulchritudo ATCC 27043]
Length = 416
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 137/284 (48%), Gaps = 45/284 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + Q D +ILVLDEAD +L G+ +D+ + +P Q
Sbjct: 125 DILVATPGRLLDLFT----QRAVRFDEAEILVLDEADKMLDMGFIEDINKIVERLPEDVQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S V +L K + +P ++L +++ PK Q W+ ++DK +L
Sbjct: 181 NLLFSATLSRKVRELAKTAVPDPVEISL----HLQNAEKPKIDQ--WLVTVDKDKKSALL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ L E + LIF T A +L LEK GIK+ ++ Q +R +LE+F G
Sbjct: 235 SHLITENNWGQTLIFIETKHGAAKLVTQLEKRGIKAEAFHSGRSQGARAQLLEDFKTGKL 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNVHTVINFEM 274
YL+AT GV RGID ++ V+N+++
Sbjct: 295 KYLVAT----------------------------------GVAARGIDIAELNRVVNYDL 320
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
P YVHRIGRTGRA +G ++S VS D K I+S +G+
Sbjct: 321 PFPPDEYVHRIGRTGRAGKSGEAISFVSKDNFKNLCMIESLIGE 364
>gi|393245773|gb|EJD53283.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 463
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 161/352 (45%), Gaps = 52/352 (14%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
E G + ++V + + + + AL+ P I++A PG + L +K FS +
Sbjct: 113 FEALGGSLGVRVAVIIGGVKEIEQQIALSKRPHIIVAAPGRLNWHLE----NTKGFSLRT 168
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
LK LVLDEAD LL + D+ L V+P+ L SAT + V+KL++ L NP
Sbjct: 169 LKYLVLDEADRLLDLDFGKDIDKLLKVLPKERHTYLFSATMTDKVEKLQRASLSNP---- 224
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
V + Q+++ K + ++ L L +K +IFT T A R+ +
Sbjct: 225 -KRVAVSSKYSTVSTLLQYYLLVPLPQKEVNLIYLCN-SLAEKSIIIFTRTQHDAQRVSI 282
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242
L G + L+ L Q++RL L +F AG L+ATD
Sbjct: 283 ILRTLGFSAVPLHGALSQSARLGALAKFKAGGRKILVATDVAS----------------- 325
Query: 243 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 302
RG+D +V VIN+++P N+ Y+HR+GRT RA G SV+ V+
Sbjct: 326 ----------------RGLDIPHVDIVINYDVPTNSKDYIHRVGRTARAGRAGKSVTFVT 369
Query: 303 PDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTK 354
++++F+ ++ +G + + +P + + VE LR R E+ A+ K
Sbjct: 370 QYDVEVFKRTEAVIGKEMDA-------WP-VEKAEVEVLRQRVEEAARLAAK 413
>gi|401407050|ref|XP_003882974.1| putative ATP-dependent nucleolar RNA helicase [Neospora caninum
Liverpool]
gi|325117390|emb|CBZ52942.1| putative ATP-dependent nucleolar RNA helicase [Neospora caninum
Liverpool]
Length = 919
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 131/232 (56%), Gaps = 21/232 (9%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS-- 58
+AL++ C+ + + L SS L L PP I+I TP + L G L S +
Sbjct: 293 VALLKYCRDLITVNHTALASS---GSLLPFL--PPSILIGTPAGVVAYL--GKLDSSASI 345
Query: 59 ---FSDSLKILVLDEADLLLSYGYEDDLKALSAVIP----RGCQCLLMSATSSSDVDKLK 111
+LK+LV DEADLLLS+G+E ++ L A +P R Q LL+SAT + +V +L+
Sbjct: 346 KSLLQRNLKVLVADEADLLLSFGFESEMARLLACLPATAERHYQALLVSATLNEEVAQLQ 405
Query: 112 KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE-RDKLLYILTLLKLELVQKKALIF 170
+++LH ++ E+ D + + +F++S + DK + + LKL+LV +K LIF
Sbjct: 406 QMLLHKAVMV---EIDDTLQQA-SSQLSEFYLSLPKPGDKWVVLYAFLKLDLVPRKCLIF 461
Query: 171 TNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222
T+ + A+ +++FLE+FGI +L+ L SR +++ FN GL + LI TD
Sbjct: 462 TSGVSSAYAVRIFLERFGISCGVLSPTLSLESRQSLIQAFNKGLLEILITTD 513
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 132/243 (54%), Gaps = 25/243 (10%)
Query: 229 KDQSDEGGHVDSRKS--KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIG 286
KD S EGG ++ K+ P D EFG RG+D ++V V++F+MP++ Y+HRIG
Sbjct: 608 KDASSEGGEAPKKREAFKRMP----DDEFGSHRGLDLQSVACVLSFDMPRSVRSYIHRIG 663
Query: 287 RTGRAYNTGASVSLVSPD---EMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRY 343
R GR G SV LVS E+ + ++ + + S + P L Q+ VE RY
Sbjct: 664 RAGRGGAQGVSVCLVSQTAAREVLLLRKLVQLRREGNSGGSTALKPLSLRLQD-VECFRY 722
Query: 344 RAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLDLLK------HDKDLSK 397
R EDV + VTK + A++L+ E+L S K+K F NP+D ++L+ D+ L+
Sbjct: 723 RVEDVCRGVTKRVIAALVAKELQQEVLRSRKMKDFFRRNPRDEEVLRAACKQLKDRALAG 782
Query: 398 KPPASHLRDVPDYLLDAKT----QEACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKS 453
+ HL+ +P YLL A+T + A ++ A+A G + + ++G +R+ DPLKS
Sbjct: 783 R---GHLQHLPAYLL-AQTPPAQKTAVQLAVEAQAVQGTQATQEKRGLKRRT-LVDPLKS 837
Query: 454 FSA 456
F A
Sbjct: 838 FKA 840
>gi|385208130|ref|ZP_10034998.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385180468|gb|EIF29744.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 520
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 135/282 (47%), Gaps = 45/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+K + A +P
Sbjct: 129 DIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 183
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q LL SAT S ++ L +L +P ++ + + V K I +RDK +
Sbjct: 184 QNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAESVAQK------IHPVDRDKKREL 237
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
LT L + + L+FT T A RL L K GI S ++ Q++R L EF G
Sbjct: 238 LTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGINSLAIHGNKSQSARTRALAEFKDGT 297
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ATD RGID + V+N+++
Sbjct: 298 LQVLVATDI---------------------------------AARGIDIDQLPHVVNYDL 324
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 325 PNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 366
>gi|34541680|ref|NP_906159.1| DEAD/DEAH box helicase [Porphyromonas gingivalis W83]
gi|419970031|ref|ZP_14485545.1| DEAD/DEAH box helicase [Porphyromonas gingivalis W50]
gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
gingivalis W83]
gi|392611718|gb|EIW94447.1| DEAD/DEAH box helicase [Porphyromonas gingivalis W50]
Length = 427
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 45/291 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
R +A DIVIATPG + L+ G S S + VLDEAD +L G+ DD+ +
Sbjct: 119 RRGMAMGADIVIATPGRLISHLNLG---SADLS-HVSYFVLDEADRMLDMGFFDDIMQIY 174
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P CQ ++ SAT + KL IL +P EV ++ P+++ Q C E
Sbjct: 175 KQLPSSCQTVMFSATMPPKIRKLAASILRDPI-----EV-EIAISRPPESIMQSAYICHE 228
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
KL + L + + K+ +IF + L L K G A ++++L Q+ R ++
Sbjct: 229 AQKLPILRKLFE-QSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVM 287
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F G D L+ATD V RGID N+
Sbjct: 288 RDFKNGYVDVLVATDI---------------------------------VARGIDIDNIR 314
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYN-TGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P + YVHRIGRT R N G +++ VS +E F +I++F+G
Sbjct: 315 VVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSDFHKIETFLG 365
>gi|395538707|ref|XP_003771316.1| PREDICTED: probable ATP-dependent RNA helicase DDX47 isoform 1
[Sarcophilus harrisii]
Length = 460
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P ++IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 139 ALAKKPHVIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 194
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
+IPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 195 LIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 249
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL ++F +T + R L L G + L+ ++ QN RL L
Sbjct: 250 FKDSYLVYILN-ELAGNSFMVFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLN 308
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 309 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 335
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G S++ V+ ++++++ I+ +G
Sbjct: 336 VVNFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELYQRIEHLIG 384
>gi|221487015|gb|EEE25261.1| ATP-dependent nucleolar RNA helicase, putative [Toxoplasma gondii
GT1]
Length = 888
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 116/197 (58%), Gaps = 12/197 (6%)
Query: 34 PPDIVIATPGCMPKCLST--GVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
PP ++I TP + + G KS +LK+LV DEADLLLS+G+E+++ L A +
Sbjct: 317 PPSVLIGTPAGVVSYMGKLDGSASVKSLLQRNLKVLVADEADLLLSFGFENEMNRLLACL 376
Query: 91 P----RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS 146
P R Q LL+SAT + +V KL++++LH ++ E+ D + + +F++S
Sbjct: 377 PATAERHYQALLLSATLNEEVAKLQQMLLHKAVMV---EIDDTLQQA-SSQLSEFYLSLP 432
Query: 147 ER-DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLH 205
+ DK + + LKL LV +K LIFT+ + A+ +++FLE+FGI +L+ L SR
Sbjct: 433 KAGDKWVVLYAFLKLNLVPRKCLIFTSGVSSAYGVRIFLERFGIGCGVLSPTLSIESRQS 492
Query: 206 ILEEFNAGLFDYLIATD 222
+++ FN GL + LI TD
Sbjct: 493 LIQAFNKGLLEILITTD 509
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 123/218 (56%), Gaps = 19/218 (8%)
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS---PDEMKI 308
D EFG RG+D ++V V++F+MP++ GY+HRIGR GR G SV LVS E+ +
Sbjct: 598 DDEFGSHRGLDLQSVACVLSFDMPRSIRGYIHRIGRAGRGGAPGISVCLVSQAAAREVLL 657
Query: 309 FEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNE 368
++ ++ + S + P L Q+ VE RYR EDV + VTK + A++L+ E
Sbjct: 658 LHKLVQLRRENNDAGSTALKPLSLRLQD-VECFRYRVEDVCRGVTKRVIAALVAKELQQE 716
Query: 369 ILNSEKLKAHFEVNPKDLDLLK------HDKDLSKKPPASHLRDVPDYLLDAKT----QE 418
+L S K++ F+ NP+D ++L+ D+ L+ + HL+ +P YLL A+T +
Sbjct: 717 VLRSRKMRDFFKRNPRDEEVLRAACKQLKDRALAGR---GHLQHLPSYLL-AQTPPAQKT 772
Query: 419 ACKMVKLARAAMGNKNSSRRQGPRRKFRKSDPLKSFSA 456
A ++ A+ A G K + + G +R+ DPLKSF A
Sbjct: 773 AVQLAVEAQTARGPKATQEKLGMKRRTL-VDPLKSFRA 809
>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 514
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 174/360 (48%), Gaps = 55/360 (15%)
Query: 21 SMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYE 80
S+ + L+A + DI+IATPG + + G + D++++ VLDEAD +L G+
Sbjct: 111 SLQVNSLKAGI----DILIATPGRLNDLIGQGYITL----DAIEMFVLDEADQMLDMGFL 162
Query: 81 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 140
+D+K + ++P+ Q LL SAT +++ L +L+NP I+ + V D +++Q
Sbjct: 163 NDIKKVIKLLPKTRQTLLFSATMPKEIESLATNLLNNPEIIKISPVTSTVD-----SIEQ 217
Query: 141 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQ 200
+K+ + +L+K E + L+FT T A R+ L K +K+ ++ Q
Sbjct: 218 SVYFVDRLNKISLLTSLIK-EHKMSRVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQ 276
Query: 201 NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRG 260
N+R L +F G L+ATD RG
Sbjct: 277 NARQTALSDFKEGKIKVLVATDIA---------------------------------ARG 303
Query: 261 IDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE 320
ID + V+N+++P A Y+HRIGRTGRA G +++L + D+M EI+ +G
Sbjct: 304 IDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIEKHIGMVI 363
Query: 321 NEDSNIIAPFPLLAQNAVES-LR-YRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAH 378
E + + +P+L E +R R E+ K+V K +V+ + + L NE ++K KAH
Sbjct: 364 PE---VPSKWPMLILEKTEKPVRGQRPENTTKNVGKESVK-TEEKILLNE--GAKKTKAH 417
>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
gi|91207781|sp|Q6BQ61.2|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
Length = 477
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 143/306 (46%), Gaps = 44/306 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
L+ V + M D L P I++ATPG + L +K FS +LK LV+DEA
Sbjct: 162 LRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLE----HTKGFSLKNLKYLVMDEA 217
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D LL + L + +IP L SAT ++ + KL++ LHNP + + D
Sbjct: 218 DRLLDMDFGPALDKILKIIPTQRTTYLFSATMTNKIAKLQRASLHNPVRVAVSNKYQTAD 277
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
N+ Q + S+ K Y++ LL E + K +IFT T + R L G +
Sbjct: 278 -----NLVQSMMLVSDGYKNTYLIHLLN-EFLGKSIIIFTRTCAHSQRTALLARILGFSA 331
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
L+ +L Q RL L +F AG + LIATD
Sbjct: 332 VPLHGQLTQAQRLGSLNKFKAGKANILIATD----------------------------- 362
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D +V VIN+++P ++ Y+HR+GRT RA +G S+SL++ +++++
Sbjct: 363 ----VAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGKSGKSISLITQYDLEMYLR 418
Query: 312 IKSFVG 317
I+S +G
Sbjct: 419 IESVLG 424
>gi|333908483|ref|YP_004482069.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333478489|gb|AEF55150.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 445
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 143/294 (48%), Gaps = 44/294 (14%)
Query: 25 SDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK 84
+D +L P ++ATPG + L Q + + L++L+LDEAD +L G+ D ++
Sbjct: 114 NDQHKSLQKDPHFIVATPGRLVDHLK----QRHLYLEGLELLILDEADRMLDLGFADAMR 169
Query: 85 ALS-AVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW 142
A++ A R Q L SAT ++DV+++ +L P + +G DE K++QQ
Sbjct: 170 AINNAANHRQRQTLFFSATLDNTDVNEMASELLKEPSRVA---IGQGYDE--HKDIQQHV 224
Query: 143 ISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNS 202
+ C D +L L E K+A+IFT T RL + ++G+ + LN +L Q++
Sbjct: 225 LLCDHLDHKQALLKHLLSEQSIKQAIIFTATKADTVRLAELVAEWGMTTQALNGDLSQSA 284
Query: 203 RLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID 262
R +E F G F+ L++TD RG+D
Sbjct: 285 RNKTMESFAKGQFNVLVSTDLAS---------------------------------RGLD 311
Query: 263 FKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
+V V NF++P+ A +VHR GRTGRA G + SLV P + F+ I++F+
Sbjct: 312 IASVSHVFNFDLPKQAEEFVHRTGRTGRAGFKGDAYSLVGPKDWLSFKAIEAFL 365
>gi|88860699|ref|ZP_01135336.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
gi|88817294|gb|EAR27112.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
Length = 431
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 147/302 (48%), Gaps = 47/302 (15%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V + + + AL G DIV+ATPG + +S+ ++ D + LVLDEAD
Sbjct: 118 IKTVAVFGGVSVNAQMQALRGGSDIVVATPGRLLDLISSNAIKL----DKVSTLVLDEAD 173
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+L G+ ++L L A++P Q LL SAT V L + +L NP + +V
Sbjct: 174 RMLGLGFTEELSQLLALMPAKKQTLLFSATFPLQVQSLTQSLLTNPVEI---QVQSSDAS 230
Query: 133 VIPKNVQQFWISCSERDKLL-YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ + V F ++ + +LL +++T E ++ALIF N + L LEK GI +
Sbjct: 231 TVVQRV--FTVNKGAKTELLAHLIT----EHKWRQALIFVNAKNHCEHLAQKLEKRGISA 284
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+ + + Q++R +LEEF AG D LIATD
Sbjct: 285 KVFHGDKGQSARTRVLEEFKAGEIDILIATDIA--------------------------- 317
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D + + VIN+ +P++ A Y+HRIGR+GRA G ++SL+ D+ F
Sbjct: 318 ------ARGLDIEKLPVVINYNLPRSPADYMHRIGRSGRAGEVGLALSLIDQDDYHHFSI 371
Query: 312 IK 313
I+
Sbjct: 372 IE 373
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + ++ILVLDEAD +L G+ DL+ + ++P+ Q
Sbjct: 139 EILIATPGR----LLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKERQ 194
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL L +P + + + V Q +E DK ++
Sbjct: 195 TLLFSATFSPEIKKLASTYLRDPQTIEV-----ARSNAAASTVTQIVYDVAEGDKQAAVV 249
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL +E+ GI +A ++ + Q+ R+ L+ F G
Sbjct: 250 KLIR-DRSLKQVIVFCNSKIGASRLARQIERDGIVAAAIHGDRSQSERMQALDAFKRGEI 308
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 309 EALVATDVA---------------------------------ARGLDIVELPAVINFDLP 335
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL SP+E K +I+ +
Sbjct: 336 FNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADIEKLI 376
>gi|357977206|ref|ZP_09141177.1| DEAD/DEAH box helicase [Sphingomonas sp. KC8]
Length = 465
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 139/305 (45%), Gaps = 43/305 (14%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+L + L D AAL D++IATPG + G K +LV+DEA
Sbjct: 100 KLSMALLIGGTNMGDQIAALEKGVDVLIATPGRLMDLFQRG----KILLTGCSLLVIDEA 155
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D++ + +P Q LL SAT + + KL L NP + + VG
Sbjct: 156 DRMLDMGFIPDIEEICTKLPAQRQTLLFSATMPAPIKKLADRFLTNPKQIEVARVGAAN- 214
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+++QF + CS R K + LL+ E + A+IF+N L L+ G ++
Sbjct: 215 ----ASIEQFLVECSSRGKRDVLRDLLRAEDMH-TAIIFSNRKTTVRDLSTALKGNGFRA 269
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
++ ++ Q+ R+ L+ F +G + L+A+D
Sbjct: 270 TQIHGDMEQSERVRELDRFKSGEINILVASDV---------------------------- 301
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D K V V NF++P + YVHRIGRTGRA TG + +LV+P++ + E
Sbjct: 302 -----AARGLDVKGVSHVFNFDVPWHPDDYVHRIGRTGRAGATGKAYTLVTPEDAEAVEN 356
Query: 312 IKSFV 316
I+
Sbjct: 357 IEKLT 361
>gi|213410545|ref|XP_002176042.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
yFS275]
gi|212004089|gb|EEB09749.1| ATP-dependent rRNA helicase rrp3 [Schizosaccharomyces japonicus
yFS275]
Length = 461
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 150/313 (47%), Gaps = 44/313 (14%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSL 63
E G + +K V + M A++ P I++ TPG + L +K FS +L
Sbjct: 131 EALGGAMGVKSVVIVGGMDMVTQAVAISKKPHILVCTPGRLMDHLEN----TKGFSLRNL 186
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
K LV+DEAD LL + + + VIP+ + L SAT +S V+KL++ LHNP + +
Sbjct: 187 KYLVMDEADRLLDMDFGPIIDKILKVIPKERRTFLFSATMTSKVEKLQRASLHNPVRIAV 246
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
D ++ K + F+ + L+YI+ E+ + +IFT T++ R+ +
Sbjct: 247 SSKFSTVDTLLQKYL--FFPFKHKDTYLVYIVN----EMAGQSMIIFTRTVNDTQRVAIL 300
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKS 243
L G + L+ +L Q+SRL L +F +G L+ATD
Sbjct: 301 LRSLGFSAIPLHGQLSQSSRLGALNKFKSGARSILVATDVA------------------- 341
Query: 244 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
RG+D V VIN+++P ++ Y+HR+GRT RA +G S++LV+
Sbjct: 342 --------------ARGLDIPLVDAVINYDIPTDSKAYIHRVGRTARAGRSGKSIALVTQ 387
Query: 304 DEMKIFEEIKSFV 316
+++ F I++ +
Sbjct: 388 YDLEPFLRIEAAI 400
>gi|384172779|ref|YP_005554156.1| ATP-dependent RNA helicase [Arcobacter sp. L]
gi|345472389|dbj|BAK73839.1| ATP-dependent RNA helicase [Arcobacter sp. L]
Length = 448
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 138/290 (47%), Gaps = 45/290 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+A L DI+IATPG + +S L ++ L+LDEAD +L G+ +D+K +
Sbjct: 117 KALLKKGVDIIIATPGRLLDLISQDSLNL----SKIEFLILDEADRMLDMGFINDIKKIL 172
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS- 146
A++P+ Q LL SAT S+++ KL +L +P ++ + + + VQQ
Sbjct: 173 AILPKQRQNLLFSATFSTEIKKLADGLLKSPILIEVAKANSTSHK-----VQQIVHHVDR 227
Query: 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
ER K L I + K + K+ L+FT T A +L L K I SA ++ Q +R
Sbjct: 228 ERKKELLIHLINKNDW--KQVLVFTRTKHGANKLSEALIKENITSAAIHGNKSQGARTKA 285
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L++F G L+ATD RGID N+
Sbjct: 286 LDDFKEGKVRILVATDI---------------------------------AARGIDIDNL 312
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
VINFE+P A YVHRIGRTGRA N G ++SLV DE + I+ +
Sbjct: 313 PHVINFELPNVAEDYVHRIGRTGRAGNEGVAISLVCIDEHEYLFGIERLI 362
>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
gi|74669652|sp|Q4WJE9.1|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
Length = 472
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 142/289 (49%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 166 ALGKKPHIIVATPGRLLDHLE----NTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILK 221
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ V K + + + Q ++ +
Sbjct: 222 VLPRERRTFLFSATMSSKVESLQRASLSNPLRVS---VSSNKYQTV-STLLQSYLFLPHK 277
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ LL E V + +IFT T+ R+ L G + L+ +L Q++RL L
Sbjct: 278 HKDIYLVYLLN-EFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALG 336
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F + D L+ATD RG+D +V
Sbjct: 337 KFRSRSRDILVATDV---------------------------------AARGLDIPSVDV 363
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ YVHR+GRT RA +G ++S V+ +++I+ I+ +G
Sbjct: 364 VLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALG 412
>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
Length = 472
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 142/289 (49%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 166 ALGKKPHIIVATPGRLLDHLEN----TKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILK 221
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ V K + + + Q ++ +
Sbjct: 222 VLPRERRTFLFSATMSSKVESLQRASLSNPLRVS---VSSNKYQTV-STLLQSYLFLPHK 277
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ LL E V + +IFT T+ R+ L G + L+ +L Q++RL L
Sbjct: 278 HKDIYLVYLLN-EFVGQSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALG 336
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F + D L+ATD RG+D +V
Sbjct: 337 KFRSRSRDILVATDV---------------------------------AARGLDIPSVDV 363
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ YVHR+GRT RA +G ++S V+ +++I+ I+ +G
Sbjct: 364 VLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRIEGALG 412
>gi|452977644|gb|EME77410.1| hypothetical protein MYCFIDRAFT_83332 [Pseudocercospora fijiensis
CIRAD86]
Length = 498
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 146/307 (47%), Gaps = 49/307 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P IV+ATPG + + +K FS K LV+DEAD LL + L +
Sbjct: 188 ALAKKPHIVVATPGRLLDHME----NTKGFSVKHFKYLVMDEADRLLDLDFGPILDKILQ 243
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
+ R + +L SAT S+ ++ L + L NP +++ E KN+ Q ++ +
Sbjct: 244 ELNRDRRTMLFSATMSTKLNSLTRAALQNPVRVSISE----SSYQTVKNLMQRYMFIPHK 299
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ LL E K +IFT TI R+ L G + L+ ++ Q++RL L
Sbjct: 300 YKDIYLVYLLD-EFAGKTCIIFTRTIHETQRIAYVLRALGRSAIPLHGQMNQSARLGALN 358
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F G D L+ATD RG+D +V
Sbjct: 359 KFRGGSRDILVATD---------------------------------VAARGLDIPSVDL 385
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD------DENE 322
V+NF++P ++ YVHR+GRT RA +G ++S+V+ +++I++ I+ +G E E
Sbjct: 386 VLNFDLPPDSKTYVHRVGRTARAGKSGVAISIVTQYDIEIYQRIEKALGKKLEEHATERE 445
Query: 323 DSNIIAP 329
+ + AP
Sbjct: 446 EVMVFAP 452
>gi|254507177|ref|ZP_05119314.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
gi|219549887|gb|EED26875.1| superfamily II DNA and RNA helicase [Vibrio parahaemolyticus 16]
Length = 388
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 144/291 (49%), Gaps = 45/291 (15%)
Query: 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS 87
+ AL DI+IATPG + L ++ F + +++LV+DEAD +L G+ DD+ +
Sbjct: 117 KQALIEGVDILIATPG---RLLDMYGKRAVHFEE-IEVLVMDEADRMLDMGFIDDINKIL 172
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
+P Q LL SAT S+ V L K +H+P+ E+ ++ KN++Q W+ +
Sbjct: 173 DRLPTDIQHLLFSATLSNKVRDLAKTAVHDPF-----EISIAANQASKKNIEQ-WLITVD 226
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+DK +L+ + E +ALIF T A +L LEK GI++ ++ Q R +L
Sbjct: 227 KDKKSALLSHMIKENNWDQALIFIETKHGAAKLASQLEKRGIEAEAFHSGRSQAVRSKLL 286
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGV-VRGIDFKNV 266
+F AG Y+IAT GV RGID + +
Sbjct: 287 ADFKAGKIKYMIAT----------------------------------GVGARGIDIEGL 312
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P A YVHRIGRTGRA G ++S VS D K I++ +G
Sbjct: 313 TRVINYDLPFPADEYVHRIGRTGRADAQGEAISFVSKDNFKNLCMIEARLG 363
>gi|380492419|emb|CCF34618.1| ATP-dependent rRNA helicase RRP3 [Colletotrichum higginsianum]
Length = 481
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 47/296 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P ++IATPG + L ++K FS SLK LV+DEAD LL + + +
Sbjct: 166 ALGKKPHVIIATPGRLVDHLE----KTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILK 221
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSE 147
+PR + L SAT SS ++ L++ L +P ++ + K + + +Q + +I ++
Sbjct: 222 FVPRERRTFLFSATMSSKIESLQRASLRDPVRVS---ISSNKYQTVSTLLQYYLFIPHTQ 278
Query: 148 RD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
+D L+Y+L E KK +IFT T+ RL + L G + L+ +L Q +RL
Sbjct: 279 KDVHLIYLLN----EHAGKKIMIFTRTVAETQRLAILLRSLGFGAIPLHGQLNQTARLGA 334
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L +F G L+ATD RG+D V
Sbjct: 335 LNKFRTGTRSILVATDVA---------------------------------ARGLDVPAV 361
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
V+N ++PQ++ ++HRIGRT RA +G ++SLV+ +++IF I++ +G +E
Sbjct: 362 DVVVNHDLPQDSKTFIHRIGRTARAGKSGIALSLVTQYDLEIFLRIEAALGKKLDE 417
>gi|87118170|ref|ZP_01074069.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
gi|86165804|gb|EAQ67070.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
Length = 459
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 140/284 (49%), Gaps = 44/284 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS-AVIPRG 93
P ++ATPG + L+ Q F D L++L+LDEAD +L G+ D LK + A R
Sbjct: 138 PQFIVATPGRLVDHLN----QRNMFLDGLELLILDEADRMLDLGFADQLKQIDDAASHRL 193
Query: 94 CQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLL 152
Q L SAT +++V+ + + +L+ P + + DV ++ Q+F++ C D
Sbjct: 194 RQTLFFSATLDNAEVNDIAQRLLNEPSRVAIGAGTDVHSDI----KQKFYL-CDHLDHKE 248
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
ILT + + K+ +IFT T RL LE+ G + LN +L Q++R +++ F
Sbjct: 249 AILTHVLEQETIKQGIIFTATKLDTVRLASLLEEKGFTTQALNGDLTQSARNKVMDSFAR 308
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G F L++TD RG+D NV VINF
Sbjct: 309 GHFQILVSTDLAS---------------------------------RGLDIANVTHVINF 335
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
++P+++ YVHR GRTGRA G + SLV P + F+ +++F+
Sbjct: 336 DIPKHSEEYVHRTGRTGRAGFQGDAFSLVGPKDWHNFKALETFL 379
>gi|167623474|ref|YP_001673768.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167353496|gb|ABZ76109.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 442
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 144/301 (47%), Gaps = 45/301 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
LK + + + + +L G DIV+ATPG + +S+ L+ D LVLDEAD
Sbjct: 128 LKTLAVYGGVSTNTQMLSLRGGADIVVATPGRLIDLISSNALKL----DKTTTLVLDEAD 183
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+LS G+ ++L L A +P+ Q LL SAT +V +L +L+NP + L +
Sbjct: 184 RMLSLGFTEELNELLAKLPKTKQTLLFSATFPEEVRELTDSLLNNPVEVQLQSSEE---- 239
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ Q I+ + K + L+K Q + LIF + RL LE GI +
Sbjct: 240 ---STLVQRVITVNRNRKTALLAELIKDNQWQ-QVLIFASAKYSCNRLAQKLENAGITAE 295
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
+ +++ Q +R +LE F +G LIATD
Sbjct: 296 VFHSDKGQGARNRVLEGFKSGEISVLIATDI----------------------------- 326
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RGID + + VINFE+P++ A Y+HRIGR+GRA G ++SL+S DE + F+ I
Sbjct: 327 ----AARGIDIEKLPIVINFELPRSPADYMHRIGRSGRAGEAGLAMSLISHDEYQHFKLI 382
Query: 313 K 313
+
Sbjct: 383 E 383
>gi|307214659|gb|EFN89598.1| Probable ATP-dependent RNA helicase DDX47 [Harpegnathos saltator]
Length = 377
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 146/312 (46%), Gaps = 54/312 (17%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ +K L M S L+ P I+I TPG + L +K FS +LK LV+
Sbjct: 38 IGVKCAVLVGGMDMSAQALLLSKKPHIIITTPGRLVDYLEN----TKGFSLQNLKFLVMG 93
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD +L+ +E ++ + VIPR + LL SAT + V KL++ L NP V
Sbjct: 94 EADRILNMDFEIEVDKILRVIPRERRTLLFSATMTKKVQKLQRASLRNP----------V 143
Query: 130 KDEVIPK-----NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
K EV K +QQ++I + K +Y++ +L EL +IF T + R L L
Sbjct: 144 KVEVSTKYQTVEKLQQYYIFIPVKFKDVYLVHILN-ELAGNSFMIFCATCNNTVRTALLL 202
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244
G + L+ ++ QN R+ L +F A LI+TD
Sbjct: 203 RNLGFTAVPLHGQMSQNKRIAALTKFKARNRSILISTDVAS------------------- 243
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++ V+
Sbjct: 244 --------------RGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGRSGRSITFVTQY 289
Query: 305 EMKIFEEIKSFV 316
++++++ I+ +
Sbjct: 290 DVELYQRIEQLI 301
>gi|197336247|ref|YP_002156253.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197317737|gb|ACH67184.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 421
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 147/305 (48%), Gaps = 53/305 (17%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V + + + AL G DI++ATPG + +S+ ++ D +K LVLDEAD
Sbjct: 116 IKTVSVFGGVSVNTQMLALRGGADILVATPGRLLDLISSNAVKL----DKVKTLVLDEAD 171
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+LS G+ ++L L A+ P+ Q LL SAT +V L + +L+NP + L
Sbjct: 172 RMLSLGFTEELNELLALAPKQKQTLLFSATFPEEVQTLTQALLNNPVEIQLQSAD----- 226
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQK----KALIFTNTIDMAFRLKLFLEKFG 188
V Q ++ ++ +K T + L+QK +ALIF N + L L K G
Sbjct: 227 --ASTVVQRVLTVNKGEK-----TSVLAHLIQKNQWRQALIFVNAKNACNHLADKLAKRG 279
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
I + + + + Q +R +LE F AG D LIATD
Sbjct: 280 IAAEVFHGDKGQGARTRVLEAFKAGEIDVLIATDIA------------------------ 315
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D + + VINF++P++ A Y+HRIGR+GRA G ++SL+ ++
Sbjct: 316 ---------ARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDYHH 366
Query: 309 FEEIK 313
F+ I+
Sbjct: 367 FKIIE 371
>gi|408790906|ref|ZP_11202517.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
gi|408464935|gb|EKJ88659.1| DEAD/DEAH box helicase [Leptospira meyeri serovar Hardjo str. Went
5]
Length = 536
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 147/319 (46%), Gaps = 45/319 (14%)
Query: 1 MALIELCKGQVQLKVVQLTSSMPASDLRA---ALAGPPDIVIATPGCMPKCLSTGVLQSK 57
+ + E K ++ + + + +D R+ AL +++ATPG + + L
Sbjct: 86 IQIAEEAKKLLEFTDFGVATIIGGTDYRSQEQALGNKACLIVATPGRLIDFVKNHGLSL- 144
Query: 58 SFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHN 117
+++K+++LDEAD + G+ DLK + Q LL SAT S +V +L L+
Sbjct: 145 ---ENIKVVILDEADRMFDMGFVQDLKYIFHKCKNRKQSLLFSATLSYEVVRLASKYLNE 201
Query: 118 PYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMA 177
P EV ++VI + + Q + +KL Y++ L ++ +IFTN
Sbjct: 202 PI-----EVHINPEKVITERIDQTLLHLGREEKLPYLVNSLLNNQIEGLGIIFTNYKMNI 256
Query: 178 FRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237
++ L KFGI + L++EL Q R+ +L +F AG + YLIATD
Sbjct: 257 PKIVSVLRKFGITATGLSSELDQKKRIRLLRDFKAGKYKYLIATDVAS------------ 304
Query: 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
RGID +N+ V N+++PQ+A YVHRIGRT RA G S
Sbjct: 305 ---------------------RGIDIENIDVVYNYDLPQDAENYVHRIGRTARAGRKGMS 343
Query: 298 VSLVSPDEMKIFEEIKSFV 316
+ S + E I+ ++
Sbjct: 344 IGFCSETDYTELERIERYL 362
>gi|410637091|ref|ZP_11347679.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
gi|410143470|dbj|GAC14884.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
Length = 412
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 139/283 (49%), Gaps = 43/283 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + Q D+L+ILVLDEAD +L G+ D+K + ++P Q
Sbjct: 125 DILVATPGRLLDLYN----QKAVKFDNLQILVLDEADRMLDMGFIHDIKRIIKLLPNSRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S+ + +L K I++NP +++ D+V + I ++ K +L
Sbjct: 181 NLLFSATFSTQIRELAKSIVNNPVEISVAPANKTADKV------EQCIHPVDKSKKSGLL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
T + + + L+F+ T A RL L GI SA ++ Q +R L EF +
Sbjct: 235 THIIKQQNMDQVLVFSRTKHGANRLAKQLTARGIVSAAIHGNKSQGARTKALAEFKSSAI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + VIN+++P
Sbjct: 295 QVLVATDIA---------------------------------ARGLDIHQLPFVINYDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
A YVHRIGRTGRA TG ++SLV+ +++K+ ++I+ +G+
Sbjct: 322 HVAEDYVHRIGRTGRAGATGHAISLVTAEDIKLLKDIERVIGE 364
>gi|449516409|ref|XP_004165239.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
28-like [Cucumis sativus]
Length = 733
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 141/319 (44%), Gaps = 45/319 (14%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS- 60
++IE ++ + + + AAL PD+V+ATPG M L S S
Sbjct: 224 SMIEKLAQFTDIRCCLIVGGLSRKEQEAALRSMPDVVVATPGRMIDHLRN----SMSVDL 279
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
D L +L+LDEAD LL G+ +++ L + P+ Q +L SAT + +V++L KL L P
Sbjct: 280 DDLAVLILDEADRLLELGFSAEIRELVRLCPKRRQTMLFSATMTEEVNELIKLSLTKPLR 339
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKL--ELVQKKALIFTNTIDMAF 178
L+ PK + + + ++ LL L + K ++F+ T A
Sbjct: 340 LSADPATKR-----PKTLTEEVVRLRRMREVNQEAVLLSLCSKTFTSKVIVFSGTKQAAH 394
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 238
RLK+ G K+A L+ L Q RL LE F D+LIATD
Sbjct: 395 RLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIATD---------------- 438
Query: 239 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 298
RG+D V TVINF P++ YVHR+GRT RA G +V
Sbjct: 439 -----------------VAARGLDIIGVETVINFACPRDLTSYVHRVGRTARAGREGYAV 481
Query: 299 SLVSPDEMKIFEEIKSFVG 317
+ V+ ++ + + I G
Sbjct: 482 TFVTDNDRSLLKAIAKRAG 500
>gi|449460106|ref|XP_004147787.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cucumis
sativus]
Length = 733
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 141/319 (44%), Gaps = 45/319 (14%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS- 60
++IE ++ + + + AAL PD+V+ATPG M L S S
Sbjct: 224 SMIEKLAQFTDIRCCLIVGGLSRKEQEAALRSMPDVVVATPGRMIDHLRN----SMSVDL 279
Query: 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI 120
D L +L+LDEAD LL G+ +++ L + P+ Q +L SAT + +V++L KL L P
Sbjct: 280 DDLAVLILDEADRLLELGFSAEIRELVRLCPKRRQTMLFSATMTEEVNELIKLSLTKPLR 339
Query: 121 LTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKL--ELVQKKALIFTNTIDMAF 178
L+ PK + + + ++ LL L + K ++F+ T A
Sbjct: 340 LSADPATKR-----PKTLTEEVVRLRRMREVNQEAVLLSLCSKTFTSKVIVFSGTKQAAH 394
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 238
RLK+ G K+A L+ L Q RL LE F D+LIATD
Sbjct: 395 RLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIATD---------------- 438
Query: 239 DSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASV 298
RG+D V TVINF P++ YVHR+GRT RA G +V
Sbjct: 439 -----------------VAARGLDIIGVETVINFACPRDLTSYVHRVGRTARAGREGYAV 481
Query: 299 SLVSPDEMKIFEEIKSFVG 317
+ V+ ++ + + I G
Sbjct: 482 TFVTDNDRSLLKAIAKRAG 500
>gi|409082704|gb|EKM83062.1| hypothetical protein AGABI1DRAFT_33446 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426200570|gb|EKV50494.1| hypothetical protein AGABI2DRAFT_64060 [Agaricus bisporus var.
bisporus H97]
Length = 453
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 146/302 (48%), Gaps = 56/302 (18%)
Query: 22 MPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYE 80
MPA + ALA P IV+ATPG + L ++K F+ ++K LVLDEAD LL +
Sbjct: 125 MPAQAI--ALAKRPHIVVATPGRLMDHLE----KTKGFNLRNIKFLVLDEADRLLDLDFG 178
Query: 81 DDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK---- 136
+ + +IP+ L SAT ++ V KL++ L NP V+ EV K
Sbjct: 179 TIIDKILKLIPKERTTYLFSATMTTKVAKLQRASLSNP----------VRVEVSTKYQTV 228
Query: 137 -NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILN 195
+ Q+++ +DK Y++ L L Q +IFT T+ A RL + L G + L+
Sbjct: 229 STLLQYYLLMPLKDKDAYLVYLAN-TLAQNSIIIFTRTVHDASRLSIILRTLGFPAVPLH 287
Query: 196 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 255
+L Q+ RL L +F +G L+ATD
Sbjct: 288 GQLSQSQRLGALGQFKSGGRRVLVATDVAS------------------------------ 317
Query: 256 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
RG+D +V VINF++P ++ Y+HR+GRT RA G S++LV+ ++++ + I+
Sbjct: 318 ---RGLDIPSVDVVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRIEQV 374
Query: 316 VG 317
+G
Sbjct: 375 IG 376
>gi|323455700|gb|EGB11568.1| hypothetical protein AURANDRAFT_2416, partial [Aureococcus
anophagefferens]
Length = 435
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 138/286 (48%), Gaps = 47/286 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
P +V+ATPG + L +K FS + K LV+DEAD +LS +E +L A+ IPR
Sbjct: 115 PHVVVATPGRLVDHLE----NTKGFSLRTCKCLVMDEADRMLSMDFEKELDAIVGAIPRE 170
Query: 94 CQC-LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE-VIPKNVQQFWISCSERDKL 151
+C +L SAT +S V KL++ L+ P + V D+ +P+ + Q ++ + K
Sbjct: 171 GRCSMLFSATMTSKVAKLQRASLYKPVKVA------VNDKFAMPRQLDQRYLFVPAKHKE 224
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
Y+ +L AL+F T A R L L G +A L+ ++ Q RL L +F
Sbjct: 225 CYLAAVLDARR-GATALVFCATCAGATRATLLLRNLGFDAACLHGQMAQPKRLGALHKFK 283
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
AG L+ATD RG+D V V+N
Sbjct: 284 AGAATILVATDVA---------------------------------ARGLDIPAVDLVLN 310
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+++P + YVHR+GRT RA G++++ V+ ++++++ ++ +G
Sbjct: 311 YDVPTHGKEYVHRVGRTARAGRKGSAIAFVTQYDVELYQRLEHLIG 356
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 137/281 (48%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG L V Q + +++LVLDEAD +L G+ DL+ + ++P Q
Sbjct: 170 EILIATPGR----LLDHVQQKSTSLAQVQMLVLDEADRMLDMGFLPDLQRILNLLPSQRQ 225
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S+++ KL L +P + + + NV+Q +E DK ++
Sbjct: 226 TLLFSATFSAEIKKLASTYLRDPVTIEV-----ARSNSTASNVRQIVFEVAEPDKQAAVV 280
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L++ + K+ ++F N+ A RL LE+ G+ + ++ + Q+ R+ L+ F G
Sbjct: 281 QLIRQREL-KQVIVFCNSKIGASRLAKQLERDGVVATAIHGDRSQSERMQALDAFKRGEI 339
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RG+D + VINF++P
Sbjct: 340 EALVATDV---------------------------------AARGLDIAELPAVINFDLP 366
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
NA YVHRIGRTGRA +G ++SL S +E K +I+ +
Sbjct: 367 FNAEDYVHRIGRTGRAGASGDALSLFSGNERKQLADIEKLI 407
>gi|238021260|ref|ZP_04601686.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
gi|237868240|gb|EEP69246.1| hypothetical protein GCWU000324_01158 [Kingella oralis ATCC 51147]
Length = 449
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 134/287 (46%), Gaps = 43/287 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL+ P DIV+ATPG + + +G + D L++LVLDEAD +L G+ DD++ + A
Sbjct: 122 ALSRPIDIVVATPGRLMDHMRSGRIDF----DRLEVLVLDEADRMLDMGFIDDIETIVAA 177
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q LL SAT V KL + + N PEV +++ +++ + C +R+
Sbjct: 178 MPESRQTLLFSATWDGAVGKLARKLTKN------PEVIEIERAEAQGKIEEQLLYCDDRN 231
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
+L + + + +IFT T M L L + G + L+ ++PQ R L +
Sbjct: 232 HKNRLLDHILRDANIDQCVIFTATKAMTETLADELYEKGFAANCLHGDMPQGWRNRTLMD 291
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
G L+ATD RGID + V
Sbjct: 292 VRKGRCKILVATDV---------------------------------AARGIDVPTITHV 318
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
IN+++P+ A YVHRIGRTGRA TG +VS E + +I+ ++
Sbjct: 319 INYDLPKQAEDYVHRIGRTGRAGRTGIAVSFADAKEYMMVHKIERYI 365
>gi|377577364|ref|ZP_09806346.1| ATP-dependent RNA helicase RhlE [Escherichia hermannii NBRC 105704]
gi|377541102|dbj|GAB51511.1| ATP-dependent RNA helicase RhlE [Escherichia hermannii NBRC 105704]
Length = 488
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 138/286 (48%), Gaps = 43/286 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L G D++IATPG + Q+ D ++ILVLDEAD +L G+ D++ + A +
Sbjct: 122 LRGGVDVLIATPGRLLDLEH----QNAVKLDKVEILVLDEADRMLDMGFIHDIRRVLAKL 177
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 150
P Q LL SAT S D+ L + +LHNP EV + + + Q+ + ++ +
Sbjct: 178 PPRRQNLLFSATFSDDIKSLAEKLLHNPA-----EVEVARRNTASEQITQY-VHFVDKKR 231
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+L+L+ + ++ L+FT T A L L K GI+SA ++ Q +R L +F
Sbjct: 232 KRELLSLMIGKENWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADF 291
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + + V+
Sbjct: 292 KSGDLRVLVATDI---------------------------------AARGLDIEELPHVV 318
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 319 NYELPNVPEDYVHRIGRTGRAAATGQALSLVCVDEHKLLRDIERLL 364
>gi|408399032|gb|EKJ78157.1| hypothetical protein FPSE_01618 [Fusarium pseudograminearum CS3096]
Length = 793
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 146/296 (49%), Gaps = 46/296 (15%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PD++IATPG + S SFS D+++ILVLDEAD +L G+ ++L + +P+
Sbjct: 379 PDVIIATPGRFIDHMRN----SASFSVDTVEILVLDEADRMLEDGFAEELNEILTTLPKS 434
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSERDKLL 152
Q +L SAT +S VD+L + L+ P + + + + + + VQ+F + DK +
Sbjct: 435 RQTMLFSATMTSSVDRLISIGLNRPARVMV----NSQKKTVTTLVQEFVRLRPGREDKRM 490
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L + L +++ +IF A R ++ G+ A L+ + Q R+ +E+F
Sbjct: 491 GYLAHVCKNLYKERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDFRD 550
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G YL+ATD L S RG+D K V TVIN+
Sbjct: 551 GKVAYLLATD----------------------------LAS-----RGLDIKGVDTVINY 577
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
E PQ+ YVHR+GRT RA G ++++ + + K+ +K+ V + + + I++
Sbjct: 578 EAPQSLDIYVHRVGRTARAGRKGVALTIAAESDRKV---VKAAVKAGKAQGAKIVS 630
>gi|323527279|ref|YP_004229432.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323384281|gb|ADX56372.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 530
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 135/282 (47%), Gaps = 45/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+K + A +P
Sbjct: 129 DIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 183
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q LL SAT S ++ L +L +P ++ + + V K I +RDK +
Sbjct: 184 QNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQK------IHPVDRDKKREL 237
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
LT L + + L+FT T A RL L K GI + ++ Q++R L EF G
Sbjct: 238 LTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 297
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ATD RGID + V+NF++
Sbjct: 298 LQVLVATDI---------------------------------AARGIDIDQLPHVVNFDL 324
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 325 PNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 366
>gi|163749734|ref|ZP_02156980.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
gi|161330547|gb|EDQ01505.1| putative ATP-dependent RNA helicase [Shewanella benthica KT99]
Length = 431
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 152/324 (46%), Gaps = 62/324 (19%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+LK+ + + A+ A+ G D+++ATPG + +S+ ++ D +K LVLDEA
Sbjct: 117 RLKIEAVFGGVSANTQMLAMRGGADVLVATPGRLLDLISSNAIKL----DDVKTLVLDEA 172
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL--PEVGDV 129
D +LS G+ ++L + A++P+ Q LL SAT +V L +L P + + E +
Sbjct: 173 DRMLSLGFTEELNQVLALLPKHKQTLLFSATFPEEVKTLTDNLLSTPVEIQIQSEEQTTL 232
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
K +V N R++ +L L E ++ L+F + + RL+ L K GI
Sbjct: 233 KQQVYTVN----------RNRKTALLAHLIKENDWRQVLVFASAKNTCNRLEQKLAKAGI 282
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ I +++ Q +R +LE F G LIATD
Sbjct: 283 AAQIFHSDKSQGARTKVLEAFKNGETHVLIATDI-------------------------- 316
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RGID + VIN+E+P++ Y+HRIGR+GRA G ++SL+S DE + F
Sbjct: 317 -------AARGIDIDKLPVVINYELPRSPVDYMHRIGRSGRAGEAGLALSLISHDEYQHF 369
Query: 310 -------------EEIKSFVGDDE 320
E+++ F DDE
Sbjct: 370 KLIEKKNKIKLDREQVEGFEADDE 393
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 145/308 (47%), Gaps = 43/308 (13%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ ++ L M AL P I++ATPG + L +K FS +LK LV+D
Sbjct: 147 ISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLVMD 202
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL + L + V+PR + L SAT SS V+ L++ L NP + V
Sbjct: 203 EADRLLDMDFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLQNPLRVA---VSSS 259
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
K + + +QQ +I + K LY++ LL E V + +IF T+ RL FL G
Sbjct: 260 KFQTV-STLQQSYIFIPHKHKDLYLVYLLN-EFVGQSCIIFCRTVHETQRLSFFLRLLGF 317
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ L+ +L Q++RL L +F + D L+ATD
Sbjct: 318 GAIPLHGQLSQSARLGALGKFRSRSRDILVATDVA------------------------- 352
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RG+D +V V+NF++P ++ ++HRIGRT RA +G ++S + +++ +
Sbjct: 353 --------ARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAW 404
Query: 310 EEIKSFVG 317
I+ +G
Sbjct: 405 LRIEGALG 412
>gi|343505019|ref|ZP_08742670.1| DNA and RNA helicase [Vibrio ichthyoenteri ATCC 700023]
gi|342809229|gb|EGU44351.1| DNA and RNA helicase [Vibrio ichthyoenteri ATCC 700023]
Length = 398
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 152/320 (47%), Gaps = 56/320 (17%)
Query: 10 QVQLKVVQLTSSMPASDL-----------RAALAGPPDIVIATPGCMPKCLSTGVLQSKS 58
QV+ KV +P + L + AL DI++ATPG + +
Sbjct: 88 QVEEKVRDYGQHLPLTSLAMYGGVDEKPQKQALIEGVDILVATPGRLLDLYGKHAVHF-- 145
Query: 59 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
D +++LVLDEAD +L G+ +D+ + +P Q LL SAT S+ V +L K ++NP
Sbjct: 146 --DEVEMLVLDEADRMLDMGFIEDINKILDRLPTDIQHLLFSATLSNKVRELAKTAVYNP 203
Query: 119 YILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAF 178
+ E+ ++ K+++Q W+ ++DK +L+ L E + LIF T A
Sbjct: 204 F-----EISIAANQASKKSIEQ-WLIAVDKDKKSALLSHLIKENDWDQTLIFIETKHGAA 257
Query: 179 RLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHV 238
+L LEK GI++ ++ Q R +L++F AG Y+IAT
Sbjct: 258 KLAQQLEKRGIEAEAFHSGRSQAVRSQLLQDFKAGKIKYMIAT----------------- 300
Query: 239 DSRKSKKHPKAKLDSEFGV-VRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS 297
GV RGID + + VIN+++P A YVHRIGRTGRA +G +
Sbjct: 301 -----------------GVGARGIDIEGLTRVINYDLPFPADEYVHRIGRTGRADASGEA 343
Query: 298 VSLVSPDEMKIFEEIKSFVG 317
+S VS D K I+S +G
Sbjct: 344 ISFVSRDNFKNLCMIESRLG 363
>gi|163795533|ref|ZP_02189499.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
gi|159179132|gb|EDP63665.1| Superfamily II DNA and RNA helicase [alpha proteobacterium BAL199]
Length = 521
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 143/306 (46%), Gaps = 43/306 (14%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+L + L + D A L D++IATPG + G + +KILV+DEA
Sbjct: 105 RLSMALLIGGVSMGDQEAKLDRGVDVLIATPGRLLDHFERG----RILLTDVKILVIDEA 160
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D++ + +++P Q L SAT + ++ +L L NP EV
Sbjct: 161 DRMLDMGFIPDVERIVSLLPTIRQTLFFSATMAPEIKRLADKFLMNPK-----EVSVDAP 215
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+NV Q + CS +DK + +LLK E V ALIF N L L+++GI++
Sbjct: 216 ASAAENVAQHLVRCSVKDKRDALRSLLKSETVD-SALIFCNRKRDIGVLHRSLQRYGIEA 274
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
L+ ++ Q +R L +F AG +I +D
Sbjct: 275 VQLHGDMSQPARTETLAKFKAGEARLVICSDV---------------------------- 306
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RGID K + V NF++P +A YVHRIGRTGRA +G + +L +P++ K+
Sbjct: 307 -----AARGIDIKGLSHVFNFDVPSHAEDYVHRIGRTGRAGLSGRAFTLATPEDSKLLSA 361
Query: 312 IKSFVG 317
++ +G
Sbjct: 362 VERLIG 367
>gi|170693410|ref|ZP_02884569.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170141565|gb|EDT09734.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 510
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 135/282 (47%), Gaps = 45/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+K + A +P
Sbjct: 129 DIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 183
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q LL SAT S ++ L +L +P ++ + + V K I +RDK +
Sbjct: 184 QNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQK------IHPVDRDKKREL 237
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
LT L + + L+FT T A RL L K GI + ++ Q++R L EF G
Sbjct: 238 LTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 297
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ATD RGID + V+NF++
Sbjct: 298 LQVLVATDI---------------------------------AARGIDIDQLPHVVNFDL 324
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 325 PNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 366
>gi|397167613|ref|ZP_10491055.1| ATP-dependent RNA helicase rhlE [Enterobacter radicincitans DSM
16656]
gi|396090971|gb|EJI88539.1| ATP-dependent RNA helicase rhlE [Enterobacter radicincitans DSM
16656]
Length = 481
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 136/286 (47%), Gaps = 43/286 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L G D++IATPG + L+ DS++ILVLDEAD +L G+ D++ + A +
Sbjct: 122 LRGGVDVLIATPGRLLDLEHQNALKL----DSVEILVLDEADRMLDMGFIHDIRRVLAKL 177
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 150
P+ Q LL SAT S D+ L + +LHNP + + ++V Q +R +
Sbjct: 178 PQRRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQV----TQHVHFVDKKRKR 233
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
L L+ + + ++ L+FT T A L L K GI SA ++ Q +R L +F
Sbjct: 234 EL--LSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGITSAAIHGNKSQGARTRALADF 291
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + + V+
Sbjct: 292 KSGDIRVLVATDIA---------------------------------ARGLDIEELPHVV 318
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLL 364
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 91/308 (29%), Positives = 145/308 (47%), Gaps = 43/308 (13%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ ++ L M AL P I++ATPG + L +K FS +LK LV+D
Sbjct: 147 ISVRSTVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLVMD 202
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL + L + V+PR + L SAT SS V+ L++ L NP + V
Sbjct: 203 EADRLLDMDFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLQNPLRVA---VSSS 259
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
K + + +QQ +I + K LY++ LL E V + +IF T+ RL FL G
Sbjct: 260 KFQTV-STLQQSYIFIPHKHKDLYLVYLLN-EFVGQSCIIFCRTVHETQRLSFFLRLLGF 317
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ L+ +L Q++RL L +F + D L+ATD
Sbjct: 318 GAIPLHGQLSQSARLGALGKFRSRSRDILVATDVA------------------------- 352
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RG+D +V V+NF++P ++ ++HRIGRT RA +G ++S + +++ +
Sbjct: 353 --------ARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAGKSGVAISFATQYDVEAW 404
Query: 310 EEIKSFVG 317
I+ +G
Sbjct: 405 LRIEGALG 412
>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 513
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 141/289 (48%), Gaps = 45/289 (15%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALS 87
AAL +IVIATPG + +Q K+ + S +ILV+DEAD +L G+ DL+ +
Sbjct: 157 AALRSGVEIVIATPGRL-----LDHIQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRII 211
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
++P+ Q L+ SAT S ++ KL L +P + + + +NV Q E
Sbjct: 212 NLLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEV-----ARSNATAENVTQIVYKVEE 266
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
DK + +++ E K+ ++F+NT A RL LE G+K++ ++ + Q R+ L
Sbjct: 267 GDKGDAVSYIIR-ERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMAAL 325
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
E F G + L+ATD RG+D +
Sbjct: 326 EAFKNGTIEVLVATDVA---------------------------------ARGLDIAELP 352
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
VIN+++P NA YVHRIGRTGRA +G ++SL S + ++ +I+ +
Sbjct: 353 CVINYDLPYNAEDYVHRIGRTGRAGASGDAISLYSDKDARLLVDIEKMI 401
>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
gi|160358658|sp|A6QRQ7.1|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
Length = 485
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 146/294 (49%), Gaps = 43/294 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L P I++ATPG + L +K FS SLK LV+DEAD LL + L +
Sbjct: 173 SLGKKPHIIVATPGRLLDHLEN----TKGFSLRSLKYLVMDEADRLLDLDFGPILDKILK 228
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ + K + + +Q + +
Sbjct: 229 VLPRERRTYLFSATMSSKVESLQRASLSNPLRVS---ISSNKYQTVATLLQSYLF-IPHK 284
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ LL E + A++FT T++ RL + L G S L+ +L Q+SRL L
Sbjct: 285 YKDIYLVYLLN-EYAGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALS 343
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F + D L+ATD RG+D +V
Sbjct: 344 KFRSRSRDILVATDVA---------------------------------ARGLDIPSVDV 370
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
V+NF++P ++ Y+HR+GRT RA +G + S+V+ +++++ I++ +G +E
Sbjct: 371 VLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENALGKKLDE 424
>gi|242222657|ref|XP_002477039.1| predicted protein [Postia placenta Mad-698-R]
gi|220723636|gb|EED77767.1| predicted protein [Postia placenta Mad-698-R]
Length = 389
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 151/317 (47%), Gaps = 48/317 (15%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
IE + ++ V L M ALA P IV+ATPG + L +K FS
Sbjct: 107 IEALGSAMGVRCVTLVGGMDKMAQAVALAKRPHIVVATPGRLNDHLE----DTKGFSLRG 162
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
LK LVLDEAD LL + + + IPR L SAT ++ V KL++ L NP +
Sbjct: 163 LKFLVLDEADRLLDMDFGPIIDKILKAIPRERTTYLFSATMTTKVAKLQRASLSNPVRVE 222
Query: 123 LPEVGDVKDEVIPKNVQQF-WISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRL 180
+ E K + +Q + +I ++D L+Y+ + L Q +IFT T+ A RL
Sbjct: 223 VSE----KYSTVSTLLQYYLFIPLVQKDVHLIYLANI----LAQNSIIIFTRTVHDAQRL 274
Query: 181 KLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDS 240
+ L G + L+ +L Q++RL L +F +G L+ATD
Sbjct: 275 SIILRTLGFPAVPLHGQLSQSARLGALGKFKSGGRKVLVATDVAS--------------- 319
Query: 241 RKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSL 300
RG+D +V VIN+++P ++ Y+HR+GRT RA +G S++L
Sbjct: 320 ------------------RGLDIPHVDVVINYDIPTHSKDYIHRVGRTARAGRSGKSITL 361
Query: 301 VSPDEMKIFEEIKSFVG 317
V+ ++++ + I++ +G
Sbjct: 362 VTQYDVELIQRIETTIG 378
>gi|254514732|ref|ZP_05126793.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
gi|219676975|gb|EED33340.1| RNA helicase DbpA [gamma proteobacterium NOR5-3]
Length = 462
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 146/304 (48%), Gaps = 44/304 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
+K+V L P +L IV+ TPG + L LQ K+ S D LK+LVLDEA
Sbjct: 102 IKLVTLCGGKPFGPQVGSLEHGAHIVVGTPG---RILDH--LQRKTLSLDGLKVLVLDEA 156
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D ++++ + P+ Q LL SAT ++ K+ I +P ++T+ E D
Sbjct: 157 DRMLDMGFADSMESIISETPKSRQTLLFSATYPENIRKMSASIQRSPTMVTVDEDVGHAD 216
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
EVI +Q + + ++ +L L + A++F NT + L+++ I++
Sbjct: 217 EVI----EQLFFEVQKHERNTTLLALFE-HYRPANAVVFCNTKKQCDEVAKILQEYDIEA 271
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
++ +L Q R +L +F+ L+ATD
Sbjct: 272 RAIHGDLEQRERDQVLVQFSNNSCPVLVATDVA--------------------------- 304
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D K + VIN+E+P++ YVHRIGRTGRA TG ++S+V P E + +
Sbjct: 305 ------ARGLDIKALAMVINYELPRDPDVYVHRIGRTGRAGETGLAMSIVIPSETQRIRK 358
Query: 312 IKSF 315
I+ F
Sbjct: 359 IEEF 362
>gi|183221518|ref|YP_001839514.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911602|ref|YP_001963157.1| superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776278|gb|ABZ94579.1| Superfamily II DNA and RNA helicase [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167779940|gb|ABZ98238.1| ATP-dependent RNA helicase [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 529
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 138/304 (45%), Gaps = 42/304 (13%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L V + AL I++ATPG + + L +++K+++LDEAD
Sbjct: 101 LGVATIIGGTDYKSQEQALGNKACIIVATPGRLIDFVKNHGLSL----ENIKVVILDEAD 156
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+ G+ DLK + Q LL SAT S +V +L L++P EV ++
Sbjct: 157 RMFDMGFVQDLKYIFHKCKNRKQSLLFSATLSYEVVRLASKYLNDPI-----EVHINPEK 211
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
VI + + Q + +KL Y++ L ++ +IFTN ++ L +FGI +
Sbjct: 212 VITERIDQSLLHLGREEKLPYLVNSLLNYPIEGLGIIFTNYKMNIPKIVSALRRFGITAT 271
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
L++EL Q R+ +L +F AG + YLIATD
Sbjct: 272 GLSSELDQKKRIRLLRDFKAGKYKYLIATDVAS--------------------------- 304
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
RGID +N+ V N+++PQ+A YVHRIGRT RA G S+ S + E I
Sbjct: 305 ------RGIDIENIDVVYNYDLPQDAENYVHRIGRTARAGRKGQSIGFCSETDYTELERI 358
Query: 313 KSFV 316
+ ++
Sbjct: 359 EKYL 362
>gi|441502792|ref|ZP_20984799.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441429008|gb|ELR66463.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 416
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 142/302 (47%), Gaps = 45/302 (14%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++K V + + + AL G D+++ATPG + +S+ ++ D +K LVLDEA
Sbjct: 113 KIKTVAVFGGVSVNPQMLALRGGSDVIVATPGRLLDLVSSNAIKL----DQVKTLVLDEA 168
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +LS G+ D+L + A++P Q LL SAT V L K +LH+P + L
Sbjct: 169 DRMLSLGFTDELNKILALLPEKKQTLLFSATFPEKVTSLAKDLLHDPVEVQL-------Q 221
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ Q S ++ K + L+K + ++ LIF N + L L K GI +
Sbjct: 222 SAEASTLVQRVFSVNKGQKTAVLAHLIK-QHQWRQTLIFVNAKNACNHLAQKLSKRGITA 280
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+ + + Q +R +LE F +G LIATD
Sbjct: 281 EVFHGDKGQGARTRVLEGFKSGDIQVLIATDIA--------------------------- 313
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D + + VINF++P++ A Y+HRIGR+GRA G +SL+ D+ F+
Sbjct: 314 ------ARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFKV 367
Query: 312 IK 313
I+
Sbjct: 368 IE 369
>gi|407714673|ref|YP_006835238.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
gi|407236857|gb|AFT87056.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
Length = 530
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 135/282 (47%), Gaps = 45/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+K + A +P
Sbjct: 129 DIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 183
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q LL SAT S ++ L +L +P ++ + + V K I +RDK +
Sbjct: 184 QNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQK------IHPVDRDKKREL 237
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
LT L + + L+FT T A RL L K GI + ++ Q++R L EF G
Sbjct: 238 LTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 297
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ATD RGID + V+NF++
Sbjct: 298 LQVLVATDI---------------------------------AARGIDIDQLPHVVNFDL 324
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 325 PNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 366
>gi|62897439|dbj|BAD96660.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 variant [Homo
sapiens]
Length = 448
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 142/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 131 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 186
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V PR + L SAT + V KL++ L NP + K + + K +QQ++I +
Sbjct: 187 VNPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYIFIPSK 241
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 242 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 300
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 301 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 327
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 328 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 376
>gi|390941064|ref|YP_006404801.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390194171|gb|AFL69226.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 417
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 133/281 (47%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + +S G + K + VLDEAD +L G+ D++ + A++P Q
Sbjct: 126 DILVATPGRLLDHVSQGTINLKE----IDTFVLDEADRMLDMGFIKDIRKVIALLPSKRQ 181
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S ++ KL + IL NP ++ + + E++ + V + C + LL L
Sbjct: 182 NLLFSATYSDEIKKLCESILKNPAVVEVAR-RNTSSELVNQRV--IIVDCKRKTALLGKL 238
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
E ++ L+FT T A ++ +L K GI S+ ++ Q +R L +F G
Sbjct: 239 I---QEQKWEQVLVFTRTKHHANKVSEYLNKIGISSSAIHGNKSQGARTKALADFKGGSI 295
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RG+D + V+N E+P
Sbjct: 296 KVLVATDIA---------------------------------ARGLDIDQLPHVVNLELP 322
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
A YVHRIGRTGRA N G ++SLV DE + + I+ +
Sbjct: 323 NIAEDYVHRIGRTGRAGNNGEAISLVCVDEFEYLKGIEKLI 363
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 141/287 (49%), Gaps = 45/287 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAV 89
L G +IVIATPG + ++ K+ S S +++LV+DEAD +L G+ DL+ + +
Sbjct: 160 LRGGVEIVIATPGRL-----LDHIEQKNISLSQVQMLVMDEADRMLDMGFLPDLQRIINL 214
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P+ Q L+ SAT S ++ KL L++P + + D+V Q SE
Sbjct: 215 LPKQRQNLMFSATFSPEIKKLAATFLNDPLTIEVARSNQTADKVT-----QVVYKVSEDQ 269
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
K + LL+ + K+ ++F+NT A RL LE+ G+ + ++ + Q R+ LE
Sbjct: 270 KHALVAHLLRQRDL-KQVIVFSNTKIGASRLARVLEQEGMSATAIHGDKSQQERMAALEA 328
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F G D L+ATD RG+D ++ V
Sbjct: 329 FKKGEIDVLVATDV---------------------------------AARGLDISDLPCV 355
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
INF++P NA YVHRIGRTGRA +G ++S+ S + ++ +I+ +
Sbjct: 356 INFDLPYNAEDYVHRIGRTGRAGASGDAISIYSDKDERLLADIEKLI 402
>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 517
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 135/282 (47%), Gaps = 45/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+K + A +P
Sbjct: 129 DIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 183
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q LL SAT S ++ L +L +P ++ + + V K I +RDK +
Sbjct: 184 QNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQK------IHPVDRDKKREL 237
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
LT L + + L+FT T A RL L K GI + ++ Q++R L EF G
Sbjct: 238 LTHLIKQHNWFQVLVFTRTKHGANRLAEQLSKDGISALAIHGNKSQSARTRALAEFKDGT 297
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ATD RGID + V+NF++
Sbjct: 298 LQVLVATDI---------------------------------AARGIDIDQLPHVVNFDL 324
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 325 PNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 366
>gi|225457931|ref|XP_002273443.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Vitis
vinifera]
Length = 732
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 142/309 (45%), Gaps = 51/309 (16%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L V L+S M + LR+ PD+V+ATPG M L + S D L +L+LDEAD
Sbjct: 229 LIVGGLSSKMQETALRSM----PDVVVATPGRMIDHLRNSM--SVDLED-LAVLILDEAD 281
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL----TLPEVGD 128
LL G+ +++ L + P+ Q +L SAT + +VD+L KL + P L +
Sbjct: 282 RLLELGFNAEIRELVRLCPKRRQTMLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPAT 341
Query: 129 VKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188
+ +EV+ +++ E +L L + KA+IF+ T A RLK+ G
Sbjct: 342 LTEEVV--RIRRMREVNQE-----AVLLALCSKTFTAKAIIFSGTKQAAHRLKILFGLAG 394
Query: 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248
K+A L+ L Q RL LE F D+LIATD
Sbjct: 395 FKAAELHGNLTQVQRLDALELFRKQQVDFLIATD-------------------------- 428
Query: 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D V TVIN+ P++ YVHR+GRT RA G +V+ V+ ++ +
Sbjct: 429 -------VAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSL 481
Query: 309 FEEIKSFVG 317
+ I G
Sbjct: 482 LKSIVKRAG 490
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 136/288 (47%), Gaps = 53/288 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + G+L S SD ++ LVLDEAD +L G+ D+K + ++P Q
Sbjct: 125 DILVATPGRLLDLQNQGLL---SLSD-VEFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT ++D+ K IL NP ++ E P+N V Q + K
Sbjct: 181 NLLFSATFNTDIKKFASSILTNPVLV----------EATPENTTAEKVDQKSYRVDKSRK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ ++ E + L+FT T A RL LEK GI SA ++ QN+R+ L F
Sbjct: 231 TEMLIKFIR-EGNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + VI
Sbjct: 290 KSGKVRVLVATDIA---------------------------------ARGLDIPLLPYVI 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
N+E+P YVHRIGRTGRA +G ++SLV DE+ I+ +G+
Sbjct: 317 NYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRGIEKLLGE 364
>gi|148975750|ref|ZP_01812581.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
gi|145964823|gb|EDK30075.1| ATP-dependent RNA helicase RhlE [Vibrionales bacterium SWAT-3]
Length = 551
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 131/271 (48%), Gaps = 43/271 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + ++ D L+ILVLDEAD +L G+ D++ + A +P+ Q
Sbjct: 125 DVLVATPGRLLDLYNQNAVRF----DQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S D+ L K +++NP +++ K V+Q ++ K +
Sbjct: 181 NLLFSATFSDDIRSLAKGLVNNPVEISVSPANSTA-----KTVEQSIYPVDKKKKSPMLA 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L+K + ++ L+F+ T A +L FL++ GI +A ++ Q +R LE F G
Sbjct: 236 KLIK-DNDWRQVLVFSKTKHGANKLARFLDEQGITAAPIHGNKSQGARTKALENFKTGKV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+NF++P
Sbjct: 295 RVLVATDI---------------------------------AARGIDIPQLPQVVNFDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
+ YVHRIGRTGRA G ++SLV DE+
Sbjct: 322 HVSEDYVHRIGRTGRAGEVGKAISLVCADEV 352
>gi|449456355|ref|XP_004145915.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Cucumis
sativus]
Length = 449
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 139/289 (48%), Gaps = 46/289 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAV 89
LA P +V+ TPG + L+ +K FS +LK LVLDEAD LL+ +E + +
Sbjct: 124 LAKRPHVVVGTPGRLVDHLTN----TKGFSLRTLKYLVLDEADRLLNEDFEKSIDEILNE 179
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
IPR + L SAT + V KL++ L NP + E V Q +I ++
Sbjct: 180 IPRERRTYLFSATMTKKVRKLQRACLRNPVKI---EAATKYSTVDTLKQQYCFIPAKYKE 236
Query: 150 -KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
L+YILT E+ +++FT T D L L L G+++ ++ ++ Q RL L
Sbjct: 237 CYLVYILT----EMSGSTSMVFTRTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALN 292
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F AG + LI TD RG+D +V
Sbjct: 293 KFKAGECNILICTDVAS---------------------------------RGLDIPSVDM 319
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
VIN+++P N+ Y+HR+GRT RA +G ++SLV+ E++ + +I+ +G
Sbjct: 320 VINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIG 368
>gi|225024978|ref|ZP_03714170.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
23834]
gi|224942208|gb|EEG23417.1| hypothetical protein EIKCOROL_01867 [Eikenella corrodens ATCC
23834]
Length = 431
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 137/288 (47%), Gaps = 43/288 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
ALA P D+V+ATPG + + +G + D L++LVLDEAD +L G+ DD++ + A
Sbjct: 122 ALAKPIDLVVATPGRLMDHMRSGRIDF----DRLEVLVLDEADRMLDMGFIDDIETIVAA 177
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
P Q LL SAT V KL + + N PEV +++ E + + C +++
Sbjct: 178 TPESRQTLLFSATWDGAVGKLARRLTKN------PEVIEIEREDNQGKIDEQLFYCDDKN 231
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
+L + + + +IFT+T M+ +L L + G + L+ ++PQN R L +
Sbjct: 232 HKNRLLDHILRDANIDQCIIFTSTKAMSEQLADELYEKGFAANCLHGDMPQNWRNRTLMD 291
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
G L+ATD RGID ++ V
Sbjct: 292 LRKGRIKVLVATDV---------------------------------AARGIDVPSITHV 318
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
IN+++P+ A YVHRIGRTGRA G +++ +E +I+ ++G
Sbjct: 319 INYDLPKQAEDYVHRIGRTGRAGRHGLALTFAEVNEYVAVHKIEKYLG 366
>gi|367014751|ref|XP_003681875.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
gi|359749536|emb|CCE92664.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
Length = 740
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 177/384 (46%), Gaps = 76/384 (19%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L PDIV+ATPG + S SF+ DS+++LV+DEAD +L G++++L + +
Sbjct: 337 SLKARPDIVVATPGRFIDHIRN----SASFNVDSVEVLVIDEADRMLEEGFQEELNEILS 392
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
++P Q LL SAT +S + +L L L P + + D + K Q+F + +R
Sbjct: 393 LLPSKRQTLLFSATMNSKIKQLVSLTLKRPVRVMI----DPPKQAASKLTQEF-VRIRKR 447
Query: 149 DKL---LYILTLLKLELV-QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
D L + + KL+ QK+ ++F +MA RL++ L GI L+ L Q RL
Sbjct: 448 DHLKPSVLFHLIKKLDGTGQKRMVVFVARKEMAHRLRIILGLLGISVGELHGSLSQEQRL 507
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
+ +F + L+ TD L S RG+D
Sbjct: 508 QSVNQFKSLEVPILVCTD----------------------------LAS-----RGLDIP 534
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV---SPDEMKIFEEIKSFVGDDEN 321
+ VIN++MP+N Y+HR+GRT RA G SVSLV S D + IKS E
Sbjct: 535 KIEVVINYDMPKNYEVYLHRVGRTARAGREGRSVSLVGESSQDRSVVRSAIKSVEESSEG 594
Query: 322 EDSNIIAPFPLLAQNAVESLRY-RAEDVAKSVTKIAVRESRAQDLRNEILNSEK-----L 375
+ + AV ++ + E++ K V + + +EIL EK L
Sbjct: 595 QTA------------AVRNIDWNNVEEINKLVVSM-------EGTIDEILEEEKGEKEIL 635
Query: 376 KAHFEVNPKDLDLLKHDKDLSKKP 399
+A E+ K +LLKH ++ +P
Sbjct: 636 RAEMELR-KGENLLKHKAEIEARP 658
>gi|421750235|ref|ZP_16187502.1| helicase, partial [Cupriavidus necator HPC(L)]
gi|409770743|gb|EKN53287.1| helicase, partial [Cupriavidus necator HPC(L)]
Length = 423
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 138/285 (48%), Gaps = 47/285 (16%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
+I++ATPG + L +Q KS + S +++LVLDEAD +L G+ DL+ + ++P
Sbjct: 147 EILVATPG---RLLDH--VQQKSVNLSQVQMLVLDEADRMLDMGFLPDLQRIINLLPAKR 201
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q LL SAT S ++ KL LH P + + + NV+Q + K +
Sbjct: 202 QTLLFSATFSPEIKKLAASYLHQPVTIEVARSNSANE-----NVRQTVYQVQDGQKQEAV 256
Query: 155 LTLLKLELVQ---KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+ LLK Q ++ ++F N+ RL LE+ GI +A ++ + Q R+ LE F
Sbjct: 257 VHLLKQRADQGLSRQCIVFVNSKIGCSRLARHLEREGINAAAIHGDKTQTERMQTLEGFK 316
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
G D L+ATD RG+D ++ VIN
Sbjct: 317 QGTIDALVATD---------------------------------VAARGLDIADMPCVIN 343
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
F++P NA YVHRIGRTGRA TG ++S+ P + ++ +I+ +
Sbjct: 344 FDLPFNAEDYVHRIGRTGRAGATGDALSIFVPGDERLLADIEKML 388
>gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661437|sp|Q6FW42.1|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata]
Length = 725
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 118/432 (27%), Positives = 194/432 (44%), Gaps = 61/432 (14%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93
PDIVIATPG + S SF+ DS+++LV+DEAD +L G++D+L + +++P
Sbjct: 329 PDIVIATPGRFIDHIRN----SASFNVDSVEVLVIDEADRMLEDGFQDELNEIMSLLPSK 384
Query: 94 CQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKL-- 151
Q LL SAT +S + +L L L P + + D + K Q+F + +RD L
Sbjct: 385 RQTLLFSATMNSRIKQLISLSLKRPVRIMI----DPPKQAATKLTQEF-VRIRKRDHLKP 439
Query: 152 -LYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
L + KL+ QK+ ++F DMA +L++ L G+ A L+ L Q RL + +
Sbjct: 440 SLLFNLIRKLDPNGQKRIVVFVARKDMAHKLRIILGLLGMAVAELHGSLTQEQRLDSVNK 499
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F + LI TD L S RG+D + V
Sbjct: 500 FKSLQVPVLICTD----------------------------LAS-----RGLDIPKIEVV 526
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLV--SPDEMKIFEEIKSFVGDDENEDSNII 327
IN++MP++ Y+HR+GRT RA G S++ V + E I ++ V D E S +
Sbjct: 527 INYDMPKSYEIYLHRVGRTARAGREGRSITFVGEASAERSIVKDAIRGVNDSEIPGSKAV 586
Query: 328 APFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKDLD 387
+ N VE E++ ++V I V E +++ L+A E+ K +
Sbjct: 587 GRN--VDWNQVEETNKIVENMDQTVQDILVEEKEEKEI---------LRAEMELK-KGEN 634
Query: 388 LLKHDKDLSKKPPASHLRDVPDYLLDAKTQEACKMVKLARAAMGNKNSSRRQGPRRKFRK 447
LLKH ++ +P + + + K K + +N + G +R ++K
Sbjct: 635 LLKHKDEIQSRPKRTWFQSEKEKKNSKIMGALSKTKKEVNSKKRKRNEAMEDGHKRSYKK 694
Query: 448 SDPLKSFSAEPT 459
+ ++ E T
Sbjct: 695 TQSDRTADQERT 706
>gi|88859340|ref|ZP_01133980.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
gi|88818357|gb|EAR28172.1| hypothetical protein PTD2_20192 [Pseudoalteromonas tunicata D2]
Length = 413
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 141/293 (48%), Gaps = 51/293 (17%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
A LA D+++ATPG + + Q+ +F + L++LVLDEAD +L G+ DD++ +
Sbjct: 118 AQLATGVDVLVATPGRLVDLYNQ---QAINF-NQLELLVLDEADRMLDLGFIDDIRHIQT 173
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGD----VKDEVIPKNVQQFWIS 144
++P Q L+ SAT S ++ L K +L+NP ++ + V VK ++ P +
Sbjct: 174 LLPSERQTLMFSATFSDEIKSLAKGMLNNPQLIEVSPVNSTVDTVKQKIYPVD------K 227
Query: 145 CSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRL 204
+ + L+Y+L + ++ L+F+ T A L L GI SA ++A Q++R
Sbjct: 228 TRKSEALIYLLKKHQW----RQVLVFSRTKQGADSLVTQLNNAGINSASIHANRTQHART 283
Query: 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK 264
H L F +G L+ATD RGID
Sbjct: 284 HALNGFKSGEIKVLVATDIAS---------------------------------RGIDVN 310
Query: 265 NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+ VIN ++P A YVHRIGRTGRA G ++SL S DE + I+ +G
Sbjct: 311 QLPCVINLDLPYVAEDYVHRIGRTGRAGTAGLAISLFSIDESNQLQAIERLLG 363
>gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 453
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 136/286 (47%), Gaps = 51/286 (17%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + G + DSL LVLDEAD LL G+ +L + +P+ Q
Sbjct: 152 DILVATPGRLLDLHQRGDI----LFDSLTHLVLDEADRLLDLGFAKELDQIIQALPKQRQ 207
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT + + KL K IL+ P +V ++ N+ Q+ ++ K
Sbjct: 208 TLLFSATFAPPIKKLAKKILNQPK-----DVTTIQKAAAKPNINQWLHPVDKKRK----- 257
Query: 156 TLLKLELVQKK----ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
T L LEL+ +K ++FTNT A + L + GI + L+++ Q+ R+H+ ++F
Sbjct: 258 TELLLELLNRKPHAQVIVFTNTKKNADLVAQALNQDGISAGALHSDRTQDERIHVFDQFK 317
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
L+ATD RGID +N+ VIN
Sbjct: 318 NNEISILVATD---------------------------------VAARGIDIQNLPLVIN 344
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+++P+ + Y+HRIGRTGRA + G + S+ S DE +I++ G
Sbjct: 345 YDLPKVSEDYIHRIGRTGRAGHAGQAFSIASADEFDALLDIEALTG 390
>gi|339243967|ref|XP_003377909.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
gi|316973226|gb|EFV56846.1| ATP-dependent rRNA helicase Rrp3 [Trichinella spiralis]
Length = 496
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 141/294 (47%), Gaps = 54/294 (18%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
LA P +++ATPG + L +K FS SLK LV+DEAD +L +E ++ +
Sbjct: 176 CLAKKPHVIVATPGRLVDHLEN----TKGFSLRSLKYLVMDEADRILDMDFESEVNKILQ 231
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK-----NVQQFWI 143
VIPR + L SAT + V KL++ L +P VK EV K +QQ +I
Sbjct: 232 VIPRERKTYLFSATMTKKVTKLQRASLQDP----------VKVEVSSKYQTVDKLQQHYI 281
Query: 144 SCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSR 203
++ K Y++ +L E+ K ++FT+T + R L L G + L+ ++ Q R
Sbjct: 282 FIPQKFKDCYLVYILN-EMAGKSCIVFTSTCANSLRTALLLRNLGFTAVPLHGQMSQAKR 340
Query: 204 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDF 263
L L +F A LIATD RG+D
Sbjct: 341 LGALNKFKAKDRSILIATDVAS---------------------------------RGLDI 367
Query: 264 KNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+V VINF++P ++ Y+HR+GRT RA G S++ V+ ++++++ I+ +G
Sbjct: 368 PHVDLVINFDIPTHSKDYIHRVGRTARAGRAGISITFVTQYDVELYQRIEYLLG 421
>gi|443917623|gb|ELU38297.1| ATP-dependent rRNA helicase RRP3 [Rhizoctonia solani AG-1 IA]
Length = 1028
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 137/286 (47%), Gaps = 45/286 (15%)
Query: 33 GPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSAVIP 91
G P I++ATPG + L +K FS L+ LVLDEAD LL + + + V+P
Sbjct: 212 GKPHIIVATPGRLNDHLE----NTKGFSLRGLRYLVLDEADRLLDMDFGPVIDKILKVLP 267
Query: 92 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKL 151
R L SAT S+ V KL++ L NP + EV V + Q+++ +K
Sbjct: 268 RERNTFLFSATMSTKVAKLQRASLQNPVRV---EVNGKYSTV--STLLQYYLLTPFANKD 322
Query: 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
++++ L EL +IFT T+ A RL + L G + L+ +L Q++RL L +F
Sbjct: 323 VHLVHLAN-ELAANSIIIFTRTVHDAQRLSMVLRNLGFPAVPLHGQLSQSARLGALNKFK 381
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
AG LIATD V G+D V VIN
Sbjct: 382 AGGRSLLIATD----------------------------------VASGLDIPTVDVVIN 407
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
F++P ++ Y+HR+GRT RA G S++LV+ ++++ + I+ +G
Sbjct: 408 FDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELLQRIEGVIG 453
>gi|157376037|ref|YP_001474637.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157318411|gb|ABV37509.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 432
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 159/328 (48%), Gaps = 55/328 (16%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++KV + + A+ AL G D+++ATPG + +S+ ++ + LVLDEA
Sbjct: 117 RVKVEAVFGGVSANTQMLALRGGADVLVATPGRLLDLISSNAVKLGQVTS----LVLDEA 172
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +LS G+E++L + A +P+ Q LL SAT +V L +L +P + L +
Sbjct: 173 DRMLSLGFEEELTEILAKLPKHKQTLLFSATFPEEVKILTDKLLSSPVEVQL------QS 226
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
E QQ + + + K + L+K E ++ L+F + + RL+ LEK GI +
Sbjct: 227 EEKSTLTQQVY-TVNRNSKTALLAHLIK-ENDWRQVLVFASAKNTCNRLEQKLEKLGIAA 284
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+ +++ Q +R +LE F +G LIATD
Sbjct: 285 QVFHSDKAQGARTRVLEGFKSGEIRVLIATDIA--------------------------- 317
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE---MKI 308
RGID + + VIN+E+P++ A Y+HRIGR+GRA G ++SL+S DE KI
Sbjct: 318 ------ARGIDIEKLPVVINYELPRSPADYMHRIGRSGRAGEAGLALSLISHDEYHHFKI 371
Query: 309 FEEIKSF-------VGDDENEDSNIIAP 329
E+ F VG + +E++ + P
Sbjct: 372 IEKKNKFRLEREQVVGFEASEEAPLDCP 399
>gi|330445855|ref|ZP_08309507.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328490046|dbj|GAA04004.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 455
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/283 (32%), Positives = 136/283 (48%), Gaps = 45/283 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + L ++ F D+++ILVLDEAD +L G+ +D+ + +P Q
Sbjct: 125 DILVATPG---RLLDMYTQRAIHF-DAIEILVLDEADRMLDMGFIEDINKIVERLPVDRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
+L SAT S V L K + NP E+ K+ + Q W+ ++D +L
Sbjct: 181 NMLFSATLSDQVRFLAKTAVRNPI-----EISVAKNASADPKIDQ-WLVTVDKDMKSSLL 234
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ L E ++ALIF T A +L LEK GIK+ ++ Q R +LE+F G
Sbjct: 235 SHLIQEQQWEQALIFIETKHGAAKLVTQLEKRGIKAESFHSGRSQGVRSQLLEDFKNGKL 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVV-RGIDFKNVHTVINFEM 274
YLIAT GV RGID + + V+N+++
Sbjct: 295 QYLIAT----------------------------------GVASRGIDIEQLTRVVNYDL 320
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
P YVHRIGRTGRA +G ++S VS D K I+S +G
Sbjct: 321 PFPPEEYVHRIGRTGRAGASGEAISFVSKDNFKNLCMIESLLG 363
>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 472
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 136/289 (47%), Gaps = 47/289 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
AL P DI++ATPG L V Q ++ILVLDEAD +L G+ D+K + A
Sbjct: 122 ALRAPVDILVATPGR----LLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLAK 177
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG--DVKDEVIPKNVQQFWISCSE 147
+P Q LL SAT S ++ L +L NP ++ EV + +E++ + V +
Sbjct: 178 LPAQRQNLLFSATFSDEIKALADKLLDNPKLV---EVARRNTTNELVSQKVH-----LVD 229
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
RDK +L L E + L+FT T A RL L+K GI +A ++ QN+R L
Sbjct: 230 RDKKTELLIHLIREQNWFQVLVFTRTKHGANRLAEKLDKIGIPAAAIHGNKSQNARTRAL 289
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F +G L+ATD RG+D +
Sbjct: 290 ADFKSGELQVLVATDIA---------------------------------ARGLDIDQLP 316
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
V+NFE+P YVHRIGRTGRA + G ++SLV DE +I+ +
Sbjct: 317 HVVNFELPNVPEDYVHRIGRTGRAGSPGEALSLVCVDEFSFLRDIEKLI 365
>gi|358399923|gb|EHK49260.1| hypothetical protein TRIATDRAFT_143973 [Trichoderma atroviride IMI
206040]
Length = 479
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 144/291 (49%), Gaps = 43/291 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L ++K FS SLK LV+DEAD LL + + +
Sbjct: 169 ALGKKPHIIVATPGRLVDHLE----KTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILK 224
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
IPR + L SAT SS V+ L++ L +P ++ V K + + + Q ++ +
Sbjct: 225 FIPRERRTYLFSATMSSKVESLQRASLRDPARVS---VSSNKYQTV-STLLQHYVFIPHK 280
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ L+ E K +IFT T+ A R+ + L G + L+ +L Q++RL L
Sbjct: 281 RKDTYLIYLVN-EFAGKSIIIFTRTVFEAQRVAILLRTLGFGAIPLHGQLSQSARLGALN 339
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F G + L+ATD RG+D V
Sbjct: 340 KFKGGSREILVATDVA---------------------------------ARGLDIPAVDV 366
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
V+N ++PQ++ Y+HR+GRT RA +G ++S+ + +++I++ I++ +G +
Sbjct: 367 VLNHDLPQDSKTYIHRVGRTARAGKSGIAISIATQYDLEIYQRIEAALGKE 417
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 141/289 (48%), Gaps = 45/289 (15%)
Query: 29 AALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALS 87
AAL +IVIATPG + + Q K+ + S +ILV+DEAD +L G+ DL+ +
Sbjct: 149 AALRSGIEIVIATPGRLLDHV-----QQKTLNLSQTQILVMDEADRMLDMGFLPDLQRII 203
Query: 88 AVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE 147
++P+ Q L+ SAT S ++ KL L NP + + D NV Q +E
Sbjct: 204 NLLPKERQNLMFSATFSGEIKKLAATFLKNPVTIEVARSNATAD-----NVTQTMYHVNE 258
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+ K + +++ E K+ ++F+NT A +L LE G+ ++ ++ + QN R+ L
Sbjct: 259 QTKAEAVSYIIR-ERNLKQVIVFSNTKIGASKLARHLENEGVNASAIHGDKTQNERMAAL 317
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
E F G + L+ATD RG+D +
Sbjct: 318 EAFKRGEIEVLVATDV---------------------------------AARGLDIAELP 344
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
VINF++P NA YVHRIGRTGRA +G ++SL + + ++ +I+ +
Sbjct: 345 CVINFDLPYNAEDYVHRIGRTGRAGASGDAISLYADKDERLLVDIEKMI 393
>gi|390598048|gb|EIN07447.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 449
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 148/302 (49%), Gaps = 48/302 (15%)
Query: 18 LTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLS 76
L M D ALA P I++ATPG + + L+ ++K FS LK LVLDEAD LL
Sbjct: 116 LVGGMDLIDQAVALAKKPHIIVATPGRLQQHLT----ETKGFSLRGLKFLVLDEADRLLD 171
Query: 77 YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPK 136
+ + + +IP+ L SAT ++ V KL++ L NP + EV K + +
Sbjct: 172 LDFGPVIDQILKIIPKERTTYLFSATMTTKVAKLQRASLSNPIRV---EVSS-KYQTVST 227
Query: 137 NVQQF-WISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 194
+Q + +I S++D L+Y+ L +IFT T+ A RL + L G + L
Sbjct: 228 LLQYYLFIPLSQKDVHLIYLAN----SLASNSIIIFTRTVHDAQRLSIMLRILGFPAVPL 283
Query: 195 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 254
+ +L Q++RL L +F +G L+ATD
Sbjct: 284 HGQLSQSARLGALAKFKSGGRKVLVATDVAS----------------------------- 314
Query: 255 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 314
RG+D +V VINF++P ++ Y+HR+GRT RA +G S++LV+ ++++ + I+
Sbjct: 315 ----RGLDIPSVDIVINFDIPNHSKDYIHRVGRTARAGRSGKSITLVTQYDVELIQRIEE 370
Query: 315 FV 316
+
Sbjct: 371 VI 372
>gi|51245542|ref|YP_065426.1| ATP-dependent RNA helicase [Desulfotalea psychrophila LSv54]
gi|50876579|emb|CAG36419.1| probable ATP-dependent RNA helicase [Desulfotalea psychrophila
LSv54]
Length = 632
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 134/281 (47%), Gaps = 43/281 (15%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V+ TPG + + G L+ D LK LVLDEAD +LS G+ DD++ + + P+ Q
Sbjct: 176 VVVGTPGRLLDLIRQGSLKL----DQLKTLVLDEADEMLSMGFIDDIETILSQTPKDRQT 231
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILT 156
+L SAT SS V + LH+P +++ ++I +++Q + + DK+ I
Sbjct: 232 MLFSATLSSRVMSIANRYLHSPESISIS-----PKQMIGSSIEQRYYLINNSDKIAAITR 286
Query: 157 LLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+ ++E V+ ALIF T L L G + L+ +L Q +R +L F G
Sbjct: 287 VFEVETVE-SALIFARTRATVSELANELISRGFAAEGLSGDLSQEARTRVLSRFKKGQIK 345
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
L+ATD RG+D ++ V N+++P+
Sbjct: 346 VLVATDV---------------------------------AARGLDIDDISHVFNYDLPE 372
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+ YVHRIGRTGRA +G ++SLV+ + + I+ + G
Sbjct: 373 DPEVYVHRIGRTGRAGRSGTAISLVTLRDRWMHRRIEQYTG 413
>gi|452845761|gb|EME47694.1| hypothetical protein DOTSEDRAFT_77927 [Dothistroma septosporum
NZE10]
Length = 1056
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 171/378 (45%), Gaps = 80/378 (21%)
Query: 35 PDIVIATPGCM------PKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88
PDIVIATPG + L G ++ ILVLDEAD +L G+ D+L + +
Sbjct: 653 PDIVIATPGRFIDLERNYRSLDVGTIE---------ILVLDEADRMLEEGFADELNEILS 703
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF--WISCS 146
IP+ Q +L SAT ++ VD L + L P L + D + + + Q+F
Sbjct: 704 KIPKSRQTMLFSATMTTKVDDLVRSGLQRPVRLMV----DAQKQTVSGLTQEFVRLRPGR 759
Query: 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
E+ +L Y++ L + ++ + +IF A R+++ G+K+A L+ + Q R++
Sbjct: 760 EQKRLGYLMYLCE-KVYTDRVIIFFRQKKEAHRVRVIFALCGLKAAELHGSMSQEQRINS 818
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
+E F G YL+ATD L S RG+D K +
Sbjct: 819 IEAFRTGKASYLLATD----------------------------LAS-----RGLDIKGI 845
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIKSFVGDDENEDSN 325
TVIN+E PQ+ Y+HR+GRT RA +G + +L + PD + +K+
Sbjct: 846 DTVINYEAPQSHEIYLHRVGRTARAGRSGCACTLAAEPDRRVVKAAVKT----------- 894
Query: 326 IIAPFPLLAQNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFEVNPKD 385
A ++ Q +E A DV V ++A E +D ++ EK + +D
Sbjct: 895 AKAQGAIIKQRTIE-----AHDVDAWVARLAALEQDVED----VMREEKEERALSQADRD 945
Query: 386 L----DLLKHDKDLSKKP 399
L ++ KH+ ++ +P
Sbjct: 946 LTRADNIAKHEDEIMSRP 963
>gi|57640241|ref|YP_182719.1| DEAD/DEAH box helicase [Thermococcus kodakarensis KOD1]
gi|57158565|dbj|BAD84495.1| DEAD/DEAH box RNA helicase [Thermococcus kodakarensis KOD1]
Length = 406
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 136/311 (43%), Gaps = 42/311 (13%)
Query: 7 CKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKIL 66
+G+ ++ V + P AL G IV+ TPG + ++ G L D ++
Sbjct: 93 LRGKRRIYVYSVYGGQPIGPQIRALEGGVHIVVGTPGRVLDHINRGTLNL----DGVRFF 148
Query: 67 VLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEV 126
VLDEAD +L G+++D++A+ P+ + L+ SAT DV L K + NP ++ +
Sbjct: 149 VLDEADRMLDMGFQEDIEAIFRATPKEKRVLMFSATMPMDVLLLAKKYMRNPEVVIVS-- 206
Query: 127 GDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK 186
+DE++P V+Q +I + + +L E + ++F T L + L
Sbjct: 207 ---RDELVPGEVEQEYIEAVPHRRFDLLTKILSDESNEFYGIVFCQTKAETRELSMRLRA 263
Query: 187 FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246
G ++ LN ++ Q +R F A L+ATD
Sbjct: 264 AGFRAEALNGDMSQPAREKTFNRFKARKTKILVATDVA---------------------- 301
Query: 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306
RG+D + VIN+ +P N Y+HRIGRTGR G +++ ++P E+
Sbjct: 302 -----------ARGLDVPEITHVINYSIPMNPEQYIHRIGRTGRMGKKGKAITFIAPGEL 350
Query: 307 KIFEEIKSFVG 317
+ F I G
Sbjct: 351 RRFRYITKQAG 361
>gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
Length = 432
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 152/325 (46%), Gaps = 58/325 (17%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V + + + AL G DI++ATPG + +S+ ++ D + LVLDEAD
Sbjct: 116 IKTVAVFGGVSVNTQMQALRGGADIIVATPGRLLDLISSNAIKL----DKVSTLVLDEAD 171
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+LS G+ ++L L A++P Q +L SAT V +L + +L NP + + KDE
Sbjct: 172 RMLSLGFTEELAELLALMPAKKQTMLFSATFPEQVTQLTQKLLTNPVEIQVQS----KDE 227
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ Q + ++ +K + L+K + ++ALIF N L LEK G+ +
Sbjct: 228 ---STLVQRVFTVNKGEKTTVLAHLIK-QHKWRQALIFVNAKKDCEHLASKLEKRGVNAQ 283
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
+ + + Q+ R ++E+F AG + LIATD
Sbjct: 284 VFHGDKGQSERTRVIEKFKAGEIEVLIATDIA---------------------------- 315
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF--- 309
RG+D + + VINF +P++ A Y+HRIGR+GRA G ++SL+ D+ F
Sbjct: 316 -----ARGLDIEKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYDDFHHFRII 370
Query: 310 ----------EEIKSFVGDDENEDS 324
EE+ F + N D+
Sbjct: 371 EKKNKLRLEREEVTGFAVNQGNLDA 395
>gi|170726099|ref|YP_001760125.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169811446|gb|ACA86030.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 432
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 152/322 (47%), Gaps = 58/322 (18%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+LKV + + + AL G D+++ATPG + LS+ ++ S LVLDEA
Sbjct: 117 KLKVEAVFGGVSVNTQMLALRGGADVLVATPGRLLDLLSSNAIKLSQASH----LVLDEA 172
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +LS G+ ++L+ + A++P+ Q LL SAT +V +L +L++P L L +
Sbjct: 173 DRMLSLGFAEELEKVLALLPKRKQTLLFSATFPEEVKELTDSLLNSPVELHLESTEE--- 229
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
VQQ + R L L L E ++ L+F + + RL+ L K G+ +
Sbjct: 230 ---STLVQQVYTVNKNRKTAL--LAHLINERNWRQVLVFASAKNTCNRLEQKLAKAGVSA 284
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+ +++ Q SR +L+ F +G LIATD
Sbjct: 285 QVFHSDKSQGSRTRVLDGFKSGEISVLIATDIA--------------------------- 317
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF-- 309
RGID + + VIN+E+P++ + Y+HRIGR+GRA G ++SL+S DE + F
Sbjct: 318 ------ARGIDIEKLPVVINYELPRSPSDYMHRIGRSGRAGEAGLALSLISHDEYQHFKL 371
Query: 310 -----------EEIKSFVGDDE 320
E+I F D+E
Sbjct: 372 IEKKNKIRLVREQIVGFEADEE 393
>gi|170726556|ref|YP_001760582.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169811903|gb|ACA86487.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 449
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 144/304 (47%), Gaps = 43/304 (14%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
IEL + L + + + + + AL DIV+ATPG + + Q D
Sbjct: 93 IELYGKHLNLNAIAIYGGVDYAPQKQALIDGVDIVVATPGRLRDLYT----QRAIHFDET 148
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
+LVLDEAD +L G+ +D+ + +P Q LL SAT S V +L K + + L+
Sbjct: 149 TLLVLDEADRMLDMGFIEDITKIIDTLPEQRQSLLFSATLSRQVRELAKETVCDAIQLSF 208
Query: 124 PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLF 183
+ + K N++Q WI+ ++DK +L+ L E +ALIF T A +L
Sbjct: 209 NKENEAK-----PNIEQ-WITTVDKDKKSALLSHLINEQNWPQALIFIETKHGAAKLVSQ 262
Query: 184 LEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKS 243
LEK GI++ +++ Q R IL +F +G YLI+T +
Sbjct: 263 LEKRGIEAECIHSGRTQAIREQILADFKSGKIRYLISTGIS------------------- 303
Query: 244 KKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303
RGID + VIN+++P A YVHRIGRTGRA + G ++SLVS
Sbjct: 304 --------------ARGIDIDELPLVINYDLPFPADEYVHRIGRTGRAGSAGEAISLVSK 349
Query: 304 DEMK 307
D+ K
Sbjct: 350 DDFK 353
>gi|296824198|ref|XP_002850600.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
gi|238838154|gb|EEQ27816.1| ATP-dependent rRNA helicase RRP3 [Arthroderma otae CBS 113480]
Length = 474
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 145/289 (50%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 163 SLGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKYLVMDEADRLLDLDFGPVLDKILK 218
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ + K + + + Q +I +
Sbjct: 219 VLPRERRTYLFSATLSSKVESLQRASLSNPLRVS---ISSNKYQTV-STLLQSYIFIPHK 274
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ +L E + +IFT T++ RL + L G + L+ +L Q++RL L
Sbjct: 275 YKDVYLVHILN-EFPGQSTIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALG 333
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G + L+ATD RG+D V
Sbjct: 334 KFRSGSRNILVATDVA---------------------------------ARGLDIPAVDL 360
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G ++S+V+ E++I++ I+ +G
Sbjct: 361 VLNFDLPSDSKTYIHRVGRTARAGRSGRAISIVTQYEVEIWQRIEVALG 409
>gi|113969134|ref|YP_732927.1| ATP-dependent RNA helicase SrmB [Shewanella sp. MR-4]
gi|113883818|gb|ABI37870.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 420
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 146/307 (47%), Gaps = 47/307 (15%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
L + +T +P + AL G DI++ATPG + + L G K ++S+ IL++DEAD
Sbjct: 102 LNIAIITGGVPYAPQEEALKGNIDILVATPGRLMEYLDKG----KFSAESVDILIIDEAD 157
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSAT-SSSDVDKLKKLILHNPYILTLPEVGDVKD 131
+L G+ +KA++ Q +L SAT S V + + +L++P + DV
Sbjct: 158 RMLDMGFSAVVKAIALEAQGRKQNMLFSATLEGSGVIRFAREVLNDPIEI------DVDA 211
Query: 132 EVIPKNVQQFWISCSER--DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
K WI ++ K+ + LLK E V K+A++F T D+ L+ L K GI
Sbjct: 212 PRKEKAKIHQWIHLADDKDHKIALLCHLLKQEEV-KRAIVFVKTRDVVSSLEGQLLKAGI 270
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
A + ++ Q R L F G + L+ATD
Sbjct: 271 PCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVA------------------------- 305
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RGID ++ VINF+MP++A Y+HRIGRTGRA G ++SL +M+I
Sbjct: 306 --------ARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIV 357
Query: 310 EEIKSFV 316
+I+ ++
Sbjct: 358 GKIERYI 364
>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
18188]
Length = 482
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 145/289 (50%), Gaps = 43/289 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P IV+ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 170 ALGKKPHIVVATPGRLLDHLEN----TKGFSLRNLKYLVMDEADRLLDLDFGPILDKILK 225
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ + K + + + Q ++ +
Sbjct: 226 VLPRERRTYLFSATMSSKVESLQRASLSNPLRVS---ISSSKYQTV-STLLQSYLFIPHK 281
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K LY++ LL E + A++FT T++ RL + L G + L+ +L Q+SRL L
Sbjct: 282 YKDLYLVYLLN-EYAGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALS 340
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F + D L+ATD RG+D +V
Sbjct: 341 KFRSRSRDILVATDVA---------------------------------ARGLDIPSVDV 367
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G + ++V+ +++++ I++ +G
Sbjct: 368 VLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIVTQYDLEVWLRIENALG 416
>gi|295670994|ref|XP_002796044.1| DEAD-box ATP-dependent RNA helicase [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284177|gb|EEH39743.1| DEAD-box ATP-dependent RNA helicase [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 319
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 142/286 (49%), Gaps = 43/286 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 7 ALGKKPHIIVATPGRLLDHLE----NTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILK 62
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ + K + + +Q F + +
Sbjct: 63 VLPRERRTYLFSATMSSKVESLQRASLSNPLRVS---ISSSKYQTVSALLQTF-LFIPHK 118
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ LL E + A+IFT T++ RL + L G + L+ +L Q+SRL L
Sbjct: 119 YKDIYLVYLLN-EFAGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALS 177
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F + D L+ATD RG+D +V
Sbjct: 178 KFRSRSRDILVATDVA---------------------------------ARGLDIPSVDV 204
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKS 314
V+NF++P ++ Y+HR+GRT RA +G + S V+ +++++ I++
Sbjct: 205 VLNFDLPPDSKTYIHRVGRTARAGKSGHAFSFVTQYDLEVWLRIEN 250
>gi|404406153|ref|ZP_10997737.1| DNA/RNA helicase [Alistipes sp. JC136]
Length = 541
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 134/282 (47%), Gaps = 43/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + + G + D ++ VLDEAD +L G+ D++ + ++P Q
Sbjct: 126 DLLVATPGRLLDLIGQGYISL----DKIRFFVLDEADRMLDMGFIHDIRRILPLLPAQRQ 181
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L SAT D+ +L ILH+P ++T+ V E I + V + +E+ +LL +
Sbjct: 182 TLFFSATMPPDIAQLAAKILHDPVLVTVTPPASVV-ETISQRVH--FAEKAEKSQLL--I 236
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
LL+ Q + L+FT T A +L L + GI+S+ ++ QN+R+ + +F G
Sbjct: 237 DLLEGSDAQ-QVLVFTRTKHGADKLAKILNRAGIQSSAIHGNKSQNARVKAMNDFKGGFC 295
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
LIATD RGID + VIN+++P
Sbjct: 296 RVLIATDI---------------------------------AARGIDIDQLPLVINYDLP 322
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+ YVHRIGRTGRA G + S S DE ++I+ G
Sbjct: 323 EVPETYVHRIGRTGRAGYEGTAWSFCSEDEFDYLKDIQKLTG 364
>gi|347529289|ref|YP_004836037.1| putative helicase [Sphingobium sp. SYK-6]
gi|345137971|dbj|BAK67580.1| putative helicase [Sphingobium sp. SYK-6]
Length = 472
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 136/307 (44%), Gaps = 43/307 (14%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
+L + L + D AL D++IATPG + G + S +LV+DEA
Sbjct: 100 KLSMALLIGGVSMGDQVKALEKGVDVLIATPGRLMDLFERGNILLTGCS----LLVIDEA 155
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +L G+ D++ + +P Q LL SAT + KL L NP + + +
Sbjct: 156 DRMLDMGFIPDIENICTKLPANRQTLLFSATMPGPIKKLADKFLTNPKSIEV-----ARP 210
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
N+ Q + ER K + TLL E V A+IF N M L L + G KS
Sbjct: 211 ATASANIAQMLVPVEERGKREMLRTLLGKEDVN-TAIIFCNRKTMVRELNKSLRRHGFKS 269
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
++ ++ Q++R+ LE F +G + L+A+D
Sbjct: 270 GEIHGDIDQSARIAELERFKSGEINLLVASDV---------------------------- 301
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D K V V NF+ P + YVHRIGRTGRA TG + + V+ ++ + E
Sbjct: 302 -----AARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGATGKAFTFVTKNDAEAIEA 356
Query: 312 IKSFVGD 318
I+ +G+
Sbjct: 357 IEKLIGN 363
>gi|302817632|ref|XP_002990491.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
gi|300141659|gb|EFJ08368.1| hypothetical protein SELMODRAFT_131776 [Selaginella moellendorffii]
Length = 469
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 147/313 (46%), Gaps = 49/313 (15%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 70
V L+ + M + L P +VIATPG + + + + +FS + K LVLDE
Sbjct: 148 VHLRCAVVVGGMDMTTQAQILMERPHVVIATPGRIKAHIGSDPDIAAAFSKT-KFLVLDE 206
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYI------LTLP 124
ADLLL G++D+L+ + I + Q LL SAT + D+ L+ L H + L
Sbjct: 207 ADLLLDRGFQDELQTIFDGISKQRQTLLFSATMTGDLQALRDLFGHRAFFYQAYEGLKTV 266
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
E D + +P V+ +++ Y+L L+LE + + +IF + L L L
Sbjct: 267 ESLDQRYIFMPGKVKNVYLT--------YLLENLELEDI-RSVIIFVSRCRTCHLLSLIL 317
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244
++ GI + L++ Q RL L +F +G LIATD
Sbjct: 318 DELGISAVALHSVKTQPQRLAALNQFKSGQATILIATDVAS------------------- 358
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
RG+D V V+N+++P+ YVHR+GRT RA G ++SLV+
Sbjct: 359 --------------RGLDIPTVDLVVNYDIPRFTKDYVHRVGRTARAGRGGRAISLVTEL 404
Query: 305 EMKIFEEIKSFVG 317
++++ E++SF+G
Sbjct: 405 DVELVHEVESFLG 417
>gi|399217362|emb|CCF74249.1| unnamed protein product [Babesia microti strain RI]
Length = 394
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 159/333 (47%), Gaps = 49/333 (14%)
Query: 9 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 67
+ L+V + + + AL+ P +++A+PG LS + +K F S K L+
Sbjct: 86 ANIALEVATILGGLDMNSQAMALSKRPHVIVASPGR----LSDHIENTKGFFLKSSKFLI 141
Query: 68 LDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVG 127
LDEAD +LS ++D L + +P Q L SAT +S V KL+K L NP E+G
Sbjct: 142 LDEADRILSMDFDDALNNIIKAMPEERQTFLFSATMTSKVSKLQKASLKNPVRY---EIG 198
Query: 128 DVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF 187
D V ++Q + C + K ++TLL + ++F NT A +L +L+
Sbjct: 199 GKYDTV--SGLEQNFYLCPFKYKWT-VITLLVEKFTSCVTIVFCNTCSTARKLSFYLDNL 255
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 247
K+ L+ ++ Q RL L F AG + L+ T+ V S
Sbjct: 256 THKTTCLHGKMSQPLRLSALNNFKAGSSNILVTTE---------------VGS------- 293
Query: 248 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307
RG+D +V V+NF++PQ+ Y+HR+GRT RA +G +++LV+ +++
Sbjct: 294 -----------RGLDIPSVDLVVNFDVPQSGKDYIHRVGRTARAGRSGQAITLVTQYDVE 342
Query: 308 IFEEIKSFVGD-----DENEDSNIIAPFPLLAQ 335
F+ ++ +G DE ++ I++ L +Q
Sbjct: 343 AFQRVEFALGIKLKPFDEFSEAQIMSKHELCSQ 375
>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 443
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 146/311 (46%), Gaps = 44/311 (14%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
IE + +K L + ALA P I++ TPG + L +K F+ +
Sbjct: 101 IEALGAVIGVKCAVLVGGIDTMSQSMALAKKPHIIVGTPGRVVYHLE----NTKGFNLKT 156
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
LK V+DEAD LL +E+++ + VIP+ L SAT +S V KL++ L++P +
Sbjct: 157 LKYFVMDEADRLLGMDFEEEINTILKVIPKDRNTFLFSATMTSKVAKLQRASLNDPVKIQ 216
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
+ D +QQ +I + K Y+ +L EL +IFT+T + +L +
Sbjct: 217 VATKYSTVD-----TLQQEYIFIPYKHKECYLTYILN-ELAGNSVIIFTSTCAASTKLAI 270
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242
L K+ +N ++ Q+ RL L +F A D L+ATD
Sbjct: 271 MLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMDILVATDVA------------------ 312
Query: 243 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 302
RG+D +V VIN+++P ++ Y+HR+GRT RA TG +V+LV+
Sbjct: 313 ---------------ARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVT 357
Query: 303 PDEMKIFEEIK 313
+++I+ I+
Sbjct: 358 QYDVEIYLRIE 368
>gi|336398712|ref|ZP_08579512.1| DEAD/DEAH box helicase domain protein [Prevotella
multisaccharivorax DSM 17128]
gi|336068448|gb|EGN57082.1| DEAD/DEAH box helicase domain protein [Prevotella
multisaccharivorax DSM 17128]
Length = 552
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 138/284 (48%), Gaps = 44/284 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + +S G + S VLDEAD +L G+ DD+ +++ +P+ CQ
Sbjct: 128 DVIIATPGRLISHISMGNINLSKVS----FFVLDEADRMLDMGFSDDILKIASKLPKECQ 183
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
++ SAT D++KL + +L NP + L + +QQ C E KL I
Sbjct: 184 TIMFSATMPKDIEKLAQSLLKNPIEVKLAVSKPA------EKIQQSAYICYETQKLQIIQ 237
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+ K + K+ +IF+ + ++ L K I S ++++L Q R I+ +F +G
Sbjct: 238 DIFKAGDL-KRVIIFSGSKMKVKQINQALLKMKINSGEMHSDLEQAERDDIMFKFKSGQI 296
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
D L+ATD V RGID ++ +IN+++P
Sbjct: 297 DVLVATDI---------------------------------VARGIDIDDIAMIINYDVP 323
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319
+A YVHRIGRT RA G +++ V+ D+M F +I+ F+ D
Sbjct: 324 HDAEDYVHRIGRTARADRDGVAITFVNEDDMFAFHQIEKFLDKD 367
>gi|350630756|gb|EHA19128.1| hypothetical protein ASPNIDRAFT_54204 [Aspergillus niger ATCC 1015]
Length = 467
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 43/320 (13%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 162 SLGKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILK 217
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ V K + + + Q ++ ++
Sbjct: 218 VLPRERRTFLFSATMSSKVESLQRASLSNPLRVS---VSTSKYQTV-STLLQSYLFIPQK 273
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K LY++ LL E + +IFT T++ RL L G + L+ +L Q++RL L
Sbjct: 274 HKDLYLVYLLN-EFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALG 332
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A + L+ATD RG+D +V
Sbjct: 333 KFRARSRNILVATDVA---------------------------------ARGLDIPSVDV 359
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
V+NF++P ++ YVHR+GRT RA +G ++S V+ +++++ I+ +G E
Sbjct: 360 VLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRIEGALGKKLKEYDCPKD 419
Query: 329 PFPLLAQNAVESLRYRAEDV 348
+L +N E+ R D+
Sbjct: 420 EVMVLGENVAEAQRQAIMDM 439
>gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
P-loop hydrolase domain [Alteromonadales bacterium TW-7]
gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
P-loop hydrolase domain [Alteromonadales bacterium TW-7]
Length = 435
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 151/325 (46%), Gaps = 58/325 (17%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V + + + AL G DI++ATPG + +S+ ++ D + LVLDEAD
Sbjct: 116 IKTVAVFGGVSVNTQMQALRGGADIIVATPGRLLDLISSNAIKL----DKVTTLVLDEAD 171
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+LS G+ ++L L A++P Q +L SAT V +L + +L NP + + KDE
Sbjct: 172 RMLSLGFTEELAELLALMPAKKQTMLFSATFPEQVTQLTQKLLTNPVEIQVQS----KDE 227
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ Q + ++ +K + L+K E ++ALIF N L LEK GI +
Sbjct: 228 ---STLVQRVFTVNKGEKTTVLAHLIK-EHKWRQALIFVNAKKDCEHLAGKLEKRGINAQ 283
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
+ + + Q+ R ++E+F AG + LIATD
Sbjct: 284 VFHGDKGQSERTRVIEKFKAGEIEVLIATDI----------------------------- 314
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF--- 309
RG+D + VINF +P++ A Y+HRIGR+GRA G ++SL+ ++ F
Sbjct: 315 ----AARGLDIAKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDFHHFKII 370
Query: 310 ----------EEIKSFVGDDENEDS 324
EE+ F + N D+
Sbjct: 371 EKKNKLRLEREEVTGFAVNQANLDA 395
>gi|359446168|ref|ZP_09235866.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20439]
gi|358039971|dbj|GAA72115.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20439]
Length = 433
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 151/325 (46%), Gaps = 58/325 (17%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEAD 72
+K V + + + AL G DI++ATPG + +S+ ++ D +K LVLDEAD
Sbjct: 116 IKTVAVFGGVSVNTQMQALRGGADIIVATPGRLLDLISSNAIKL----DKVKTLVLDEAD 171
Query: 73 LLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132
+LS G+ ++L L A++P Q +L SAT V +L + +L NP + + KDE
Sbjct: 172 RMLSLGFTEELAELLALMPAKKQTMLFSATFPEQVKQLTQELLTNPVEIQVQS----KDE 227
Query: 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192
+ Q + ++ +K + L+K ++ALIF N L LEK G+ +
Sbjct: 228 ---STLVQRVFTVNKGEKTTVLAHLIKAHQ-WRQALIFVNAKKDCEHLAGKLEKRGVNAQ 283
Query: 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252
+ + + Q+ R ++E+F AG + LIATD
Sbjct: 284 VFHGDKGQSERTRVIEKFKAGEIEVLIATDI----------------------------- 314
Query: 253 SEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF--- 309
RG+D + VINF +P++ A Y+HRIGR+GRA G ++SL+ ++ F
Sbjct: 315 ----AARGLDIAKLPVVINFNLPRSPADYMHRIGRSGRAGEVGLALSLIDYEDFHHFRII 370
Query: 310 ----------EEIKSFVGDDENEDS 324
EE+ F + N D+
Sbjct: 371 EKKNKLRLEREEVAGFAVNQANLDA 395
>gi|161504014|ref|YP_001571126.1| ATP-dependent RNA helicase RhlE [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160865361|gb|ABX21984.1| hypothetical protein SARI_02107 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 455
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 136/286 (47%), Gaps = 43/286 (15%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L G D+++ATPG + Q+ D ++ILVLDEAD +L G+ D++ + A +
Sbjct: 122 LRGGVDVLVATPGRLLDLEH----QNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKL 177
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 150
P Q LL SAT S D+ L + +LHNP + + ++V Q +R +
Sbjct: 178 PPKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQV----TQHVHFVDKKRKR 233
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
L L+LL + ++ L+FT T A L L K GI+SA ++ Q +R L +F
Sbjct: 234 EL--LSLLIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADF 291
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + + V+
Sbjct: 292 KSGDLRVLVATDIA---------------------------------ARGLDIEELPHVV 318
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
N+E+P YVHRIGRTGRA TG ++SLV DE K+ +I+ +
Sbjct: 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCIDEHKLLRDIEKLL 364
>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
gi|143462251|sp|A2RB17.1|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
Length = 467
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 43/320 (13%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 162 SLGKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILK 217
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ V K + + + Q ++ ++
Sbjct: 218 VLPRERRTFLFSATMSSKVESLQRASLSNPLRVS---VSTSKYQTV-STLLQSYLFIPQK 273
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K LY++ LL E + +IFT T++ RL L G + L+ +L Q++RL L
Sbjct: 274 HKDLYLVYLLN-EFAGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALG 332
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A + L+ATD RG+D +V
Sbjct: 333 KFRARSRNILVATDVA---------------------------------ARGLDIPSVDV 359
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
V+NF++P ++ YVHR+GRT RA +G ++S V+ +++++ I+ +G E
Sbjct: 360 VLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRIEGALGKKLKEYDCPKD 419
Query: 329 PFPLLAQNAVESLRYRAEDV 348
+L +N E+ R D+
Sbjct: 420 EVMVLGENVAEAQRQAIMDM 439
>gi|384252067|gb|EIE25544.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 415
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 141/291 (48%), Gaps = 48/291 (16%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I++ TPG + LS +K F+ +L+ LVLDEAD LL+ +E ++ +
Sbjct: 126 ALGKRPHIIVGTPGRVVDHLSN----TKGFTLKALRHLVLDEADRLLNMDFEQEIDQILK 181
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF-WISCSE 147
VIPR + L SAT ++ V KL++ L NP + + D K + QQ+ +I
Sbjct: 182 VIPRERRTQLFSATMTTKVAKLQRACLQNPVKVEV----DAKYRTVDTLRQQYLFIPAKH 237
Query: 148 RD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHI 206
+D L Y LT EL ++FT T D +L L L G + ++ ++ Q RL
Sbjct: 238 KDCYLAYFLT----ELAGATFMVFTRTCDNTRKLALMLRNLGFDALPIHGQMSQPKRLGA 293
Query: 207 LEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV 266
L +F AG L ATD RG+D V
Sbjct: 294 LNKFKAGERSILAATDVAS---------------------------------RGLDIPAV 320
Query: 267 HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+N+++P N+ YVHR+GRT RA +G S++LV+ +++ F++I++ G
Sbjct: 321 DVVVNYDVPINSKDYVHRVGRTARAGRSGRSLTLVTQYDVEQFQKIEALTG 371
>gi|281349896|gb|EFB25480.1| hypothetical protein PANDA_006406 [Ailuropoda melanoleuca]
Length = 383
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 109 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 164
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
VIPR + L SAT + V KL++ L NP + K + + K +QQ+++ +
Sbjct: 165 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSS----KYQTVEK-LQQYYLFIPSK 219
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ +L EL +IF +T + R L L G + L+ ++ Q+ RL L
Sbjct: 220 FKDTYLVYILN-ELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLN 278
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F A L+ATD RG+D +V
Sbjct: 279 KFKAKARSILLATDVAS---------------------------------RGLDIPHVDV 305
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
V+NF++P ++ Y+HR+GRT RA +G +++ V+ ++++F+ I+ +G
Sbjct: 306 VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIG 354
>gi|149187557|ref|ZP_01865854.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
gi|148838437|gb|EDL55377.1| putative ATP-dependent RNA helicase [Vibrio shilonii AK1]
Length = 416
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 143/302 (47%), Gaps = 45/302 (14%)
Query: 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEA 71
++K V + + A+ AL G DIV+ATPG + +S+ ++ D ++ LVLDEA
Sbjct: 113 EIKTVAVFGGVSANPQMLALRGGSDIVVATPGRLLDLVSSNAIKL----DQVQTLVLDEA 168
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D +LS G+ ++L + A++P Q LL SAT V L + +L NP + L
Sbjct: 169 DRMLSLGFTEELNKILALLPEKKQTLLFSATFPEKVTSLAQHLLSNPVEVQL-------Q 221
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
+ Q S ++ K + L+K + ++ALIF N + L L K GI +
Sbjct: 222 SAETSTLVQRVFSVNKGQKTAVLAHLIK-QHQWRQALIFVNAKNSCNHLAQKLSKRGITA 280
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
+ + + Q +R +LE F +G LIATD
Sbjct: 281 EVFHGDKGQGARTRVLEGFKSGDIQVLIATDIA--------------------------- 313
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D + + VINF++P++ A Y+HRIGR+GRA G +SL+ D+ F+
Sbjct: 314 ------ARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEVGLGLSLIDYDDYHHFKV 367
Query: 312 IK 313
I+
Sbjct: 368 IE 369
>gi|91785132|ref|YP_560338.1| ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400]
gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
LB400]
Length = 543
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 135/282 (47%), Gaps = 45/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
DIV+ATPG + L +Q K+ S L+ILVLDEAD +L G+ D+K + A +P
Sbjct: 151 DIVVATPG---RLLDH--MQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 205
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q LL SAT S ++ L +L +P ++ + + V K I +RDK +
Sbjct: 206 QNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQK------IHPVDRDKKREL 259
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
LT L + + L+FT T A RL L K GI + ++ Q++R L EF G
Sbjct: 260 LTHLIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGT 319
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ATD RGID + V+N+++
Sbjct: 320 LQVLVATDI---------------------------------AARGIDIDQLPHVVNYDL 346
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
P YVHRIGRTGRA TG +VSLV DE+++ ++I+ +
Sbjct: 347 PNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKDIEKLI 388
>gi|344234177|gb|EGV66047.1| hypothetical protein CANTEDRAFT_129471 [Candida tenuis ATCC 10573]
gi|344234178|gb|EGV66048.1| ATP-dependent rRNA helicase RRP3 [Candida tenuis ATCC 10573]
Length = 485
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/306 (29%), Positives = 143/306 (46%), Gaps = 44/306 (14%)
Query: 13 LKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEA 71
L+ V + M D L P +++ATPG + L +K FS +LK LV+DEA
Sbjct: 170 LRSVCIVGGMDMMDQARDLMRKPHVIVATPGRITDHLE----HTKGFSLKNLKYLVMDEA 225
Query: 72 DLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKD 131
D LL + L + VIP L SAT ++ + KL++ L NP + + D
Sbjct: 226 DRLLDMDFGPALDKILKVIPVERTSYLFSATMTNKIAKLQRASLKNPVRVAVSNKYQTAD 285
Query: 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191
N+ Q + S+ K +++ LL E + K ++FT T+ + R + G S
Sbjct: 286 -----NLVQSMMLVSDGYKNTFLVHLLN-EFMGKSIIVFTRTVANSERTAILTRLLGFSS 339
Query: 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251
LN +L Q RL L +F +G + LIATD
Sbjct: 340 VPLNGQLSQTQRLGALNKFKSGKANILIATD----------------------------- 370
Query: 252 DSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEE 311
RG+D +V VIN+++P ++ Y+HR+GRT RA +G S+SLV+ +++++
Sbjct: 371 ----VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLELYLR 426
Query: 312 IKSFVG 317
I+S +G
Sbjct: 427 IESVLG 432
>gi|440803376|gb|ELR24282.1| DEAD (AspGlu-Ala-Asp) box polypeptide 47 isoform 3, putative,
partial [Acanthamoeba castellanii str. Neff]
Length = 261
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 141/289 (48%), Gaps = 44/289 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P I+ ATPG + L +K FS SLK LVLDEAD LL+ YE+++ + A
Sbjct: 1 ALCLQPHIICATPGRLLFHLQ----NTKGFSLKSLKYLVLDEADRLLNMDYEEEIDQILA 56
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
+P+ L SAT +S V KL++ L NP +++ D ++ Q ++ E+
Sbjct: 57 CLPKERHTYLFSATMTSKVKKLERASLANPVKISVSSKYSTVDTLL-----QNYVFVPEK 111
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ LL E V ++F T + A R+ L L G ++ ++ ++ Q+ R+ L
Sbjct: 112 FKDCYLVYLLN-EFVGNSIIVFVATCNTAQRVALMLRNLGFEALPIHGKMSQSRRIGSLN 170
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
F G + L+ATD RG+D +V
Sbjct: 171 TFKTGDRNILLATDVAS---------------------------------RGLDIPSVDL 197
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
+IN+++P N Y+HR+GRT RA G +VS+V+ +++ F++I+ G
Sbjct: 198 IINYDIPLNPKDYIHRVGRTARAQRAGRAVSVVTQYDIEFFQKIEQLTG 246
>gi|347735337|ref|ZP_08868231.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
gi|346921472|gb|EGY02178.1| ATP-dependent RNA helicase RhlE [Azospirillum amazonense Y2]
Length = 387
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 136/275 (49%), Gaps = 42/275 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89
ALA DI++ATPG + ++ G ++ D +++LVLDEAD +L G+ L+ + A
Sbjct: 121 ALANGIDILVATPGRLLDLMTQGHVRL----DKVEVLVLDEADRMLDMGFIHSLRKIMAK 176
Query: 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD 149
+P Q L SAT +DV +L +L +P + + V + + K + ++ +E+
Sbjct: 177 LPANRQTLFFSATMPADVSELAGKMLRDPLRVEVTPVSTTAERIEQKVI---FVPAAEKR 233
Query: 150 KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEE 209
+L + L++ + +++++FT T A R+ LE+ GI++A ++ QN+R L+
Sbjct: 234 HVL--VDLIRGDAGMQRSIVFTRTKHGANRVSAQLEQAGIEAAAIHGNKSQNARQKALDG 291
Query: 210 FNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269
F AG L+ATD RGID V V
Sbjct: 292 FRAGTVRVLVATDIA---------------------------------ARGIDVDGVTHV 318
Query: 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
+NFE+P YVHRIGRT RA +G +VSL + D
Sbjct: 319 VNFELPNEPETYVHRIGRTARAGASGVAVSLCTAD 353
>gi|424513552|emb|CCO66174.1| predicted protein [Bathycoccus prasinos]
Length = 487
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 150/312 (48%), Gaps = 45/312 (14%)
Query: 7 CKGQ-VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLK 64
C G+ + +K L M + + P +++ TPG + L +K FS LK
Sbjct: 127 CLGKDIGVKCAVLVGGMDMTSQSLQIGKRPHVLVGTPGRVVDHLEN----TKGFSLRQLK 182
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124
+L+LDEAD LL+ +E+++ + VIPR + L SAT +S V+KL++ L +P +
Sbjct: 183 VLILDEADRLLNLDFEEEIDTILKVIPRERRTQLFSATMTSKVNKLQRACLRDPVKV--- 239
Query: 125 EVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFL 184
EV V K+++Q ++ + K Y LL EL ++FT T + +L L
Sbjct: 240 EVASKYSTV--KSLKQNYLFVPAKHKECYACYLLN-ELSASTIMMFTRTCEQTRKLALVA 296
Query: 185 EKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244
G + ++ ++ Q R L +F G + L+ATD
Sbjct: 297 RNLGFSAIPIHGQMSQPKRQGALNKFKGGERNILVATDVAS------------------- 337
Query: 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304
RG+D +V VINF++P N+ YVHR+GRT RA +G +++LV+
Sbjct: 338 --------------RGLDIPSVDVVINFDVPMNSKDYVHRVGRTARAGRSGLAITLVTQY 383
Query: 305 EMKIFEEIKSFV 316
+++++++I+ +
Sbjct: 384 DVELYQKIERLI 395
>gi|401400548|ref|XP_003880804.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
gi|325115216|emb|CBZ50771.1| dead box polypeptide 27, related [Neospora caninum Liverpool]
Length = 462
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/340 (30%), Positives = 165/340 (48%), Gaps = 50/340 (14%)
Query: 9 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILV 67
G + + VV L + + ALA P +V+ +PG + L Q+K FS S+K+LV
Sbjct: 126 GSLGVTVVTLVGGLDHNTQAIALAKKPHVVVGSPGRVVDHLQ----QTKGFSLKSVKVLV 181
Query: 68 LDEADLLLSYGYEDDLKALSAVI--PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125
LDEAD LLS ++ L+ L + P Q +L SAT ++ V KL+K L P L E
Sbjct: 182 LDEADRLLSLDFDAALQVLLEHVGSPAERQTMLFSATMTTKVSKLQKASLKKPVKL---E 238
Query: 126 VGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE 185
V D + +QQ ++ + K ++ L L L ++FTNT A + LFL
Sbjct: 239 VNSKYD--VASLLQQHFLLVPFKLKHTHLAAAL-LHLSPSSVIVFTNTCANARTIALFLR 295
Query: 186 KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK 245
G +S L+ ++ Q R+ L +F A L+AT+ V S
Sbjct: 296 HLGFQSVCLHGKMTQPQRIGALTKFRAAETSCLVATE---------------VGS----- 335
Query: 246 HPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
RG+D +V VINF++P ++ Y+HR+GRT RA TG ++++V+ +
Sbjct: 336 -------------RGLDIPHVQMVINFDVPLSSKEYIHRVGRTARAGRTGRALTIVTQYD 382
Query: 306 MKIFEEIKSFVGDDENEDSNIIAP---FPLLAQNAVESLR 342
++ ++ I+ +G +E + + A P L + +E+LR
Sbjct: 383 VEAYQRIEHALGQKLDELTELTATEKVMP-LHEKVLEALR 421
>gi|358060304|dbj|GAA94058.1| hypothetical protein E5Q_00705 [Mixia osmundae IAM 14324]
Length = 447
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 153/320 (47%), Gaps = 44/320 (13%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL+ P I++ATPG + L +K FS ++K LV+DEAD LL + + +
Sbjct: 126 ALSKRPHIIVATPGRLQDHLE----NTKGFSLKAIKYLVMDEADRLLDMDFGPVIDTILK 181
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
+IPR L SAT ++ V KL++ L NP + + K + VQ++ +
Sbjct: 182 IIPRERNTFLFSATMTTKVAKLQRASLSNPVKVEV----STKYSTVDTLVQEYCF-FPFK 236
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K Y++ L EL K ++F T+ A RL L L G + L+ +L Q++RL L
Sbjct: 237 HKETYLVYLCN-ELAGKSIIVFVRTVHDAQRLSLILRTLGFPAVPLHGQLTQSNRLGALN 295
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F +G L+ATD RG+D V
Sbjct: 296 KFKSGGRQILVATDVAS---------------------------------RGLDIPMVDY 322
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENEDSNIIA 328
V+N+++P ++ Y+HR+GRT RA +G S++LV+ ++++ + I+ VG +E ++
Sbjct: 323 VVNYDIPTHSKDYIHRVGRTARAGRSGKSITLVTQYDVELLQRIEGVVGKKMSEFAHDKE 382
Query: 329 PFPLLAQNAVESLRYRAEDV 348
+L++ E+ R A ++
Sbjct: 383 AVLVLSERVTEAAREAAREI 402
>gi|254367888|ref|ZP_04983908.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
holarctica 257]
gi|134253698|gb|EBA52792.1| ATP-dependent RNA helicase rhlE [Francisella tularensis subsp.
holarctica 257]
Length = 441
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 43/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG + S ++ DSL VLDEAD +L G+ +DLK + ++P+ Q
Sbjct: 125 EILIATPGRLLDLYSQNAVKF----DSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT SS++ L L+NP ++ DV + + K Q+ + + + +K+ ++
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDKSNKINALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L +F +
Sbjct: 236 SLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RGID + VIN ++
Sbjct: 295 NVLVATDIA---------------------------------ARGIDIAQLPCVINLDLS 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 322 NVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|164661763|ref|XP_001732004.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
gi|159105905|gb|EDP44790.1| hypothetical protein MGL_1272 [Malassezia globosa CBS 7966]
Length = 470
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 149/320 (46%), Gaps = 44/320 (13%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DS 62
IE + ++ + M AL+ P +++ATPG + L +K FS S
Sbjct: 113 IEALGATIGVRCATIVGGMDMMTQSIALSKRPHVIVATPGRLQDHLEN----TKGFSLRS 168
Query: 63 LKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122
L+ LV+DEAD LL + + L IP+ + +L SAT ++ V KL++ L NP +
Sbjct: 169 LRYLVMDEADRLLDLDFGPIIDKLLQNIPKERRTMLFSATMTTKVAKLQRASLRNPVRI- 227
Query: 123 LPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKL 182
E+G V +QQ+++ K Y++ L E V ++FT T+ A RL +
Sbjct: 228 --EIGTKYSTV--STLQQYYLFMPFAHKDTYLVHLAN-EQVGHSIIVFTRTVHDAQRLAV 282
Query: 183 FLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242
L G + L+ +L Q +RL L +F AG ++ TD
Sbjct: 283 LLRLLGFSAIPLHGQLSQTARLGALNKFKAGGRSIMVCTDV------------------- 323
Query: 243 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 302
RG+D V V+NF++P ++ Y+HR+GRT RA G SV+LV+
Sbjct: 324 --------------AARGLDIPAVDLVVNFDIPTHSKDYIHRVGRTARAGRQGRSVTLVT 369
Query: 303 PDEMKIFEEIKSFVGDDENE 322
++++ + I++ +G +E
Sbjct: 370 QYDVELLQRIEAAIGKRLDE 389
>gi|89256570|ref|YP_513932.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica LVS]
gi|115315000|ref|YP_763723.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|422938927|ref|YP_007012074.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica FSC200]
gi|89144401|emb|CAJ79691.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica LVS]
gi|115129899|gb|ABI83086.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|407294078|gb|AFT92984.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica FSC200]
Length = 441
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 43/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG + S ++ DSL VLDEAD +L G+ +DLK + ++P+ Q
Sbjct: 125 EILIATPGRLLDLYSQNAVKF----DSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT SS++ L L+NP ++ DV + + K Q+ + + + +K+ ++
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDKSNKINALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L +F +
Sbjct: 236 SLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RGID + VIN ++
Sbjct: 295 NVLVATDIA---------------------------------ARGIDIAQLPCVINLDLS 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 322 NVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|328856691|gb|EGG05811.1| hypothetical protein MELLADRAFT_43753 [Melampsora larici-populina
98AG31]
Length = 573
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 152/321 (47%), Gaps = 65/321 (20%)
Query: 6 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLK 64
LC G + L+ + A L P+IV+ TPG + V ++ FS D+L+
Sbjct: 88 LCVGGMNLRTQE-----------AELRERPEIVVGTPGRVIDH----VRNTRGFSLDTLE 132
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL- 123
ILV+DEAD +L G+ D+L+ + + PR Q +L SAT S V L +L L P + +
Sbjct: 133 ILVIDEADRILEEGFRDELEEIISNCPRSRQTMLFSATVSESVADLARLSLEKPIRIKID 192
Query: 124 ----------PEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQK-KALIFTN 172
E V+D+ + K + ++ +R+ +L +TL K K + +IF
Sbjct: 193 PPKSTATGLTQEFLRVRDDQLLK--KGAGVADIQREAIL--VTLCKASSFSKGRTIIFFR 248
Query: 173 TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQS 232
+ A R+K+ FG+K+A L+ L Q R+ L++F G YL+ATD
Sbjct: 249 SKVGAHRMKVTFSLFGLKAAELHGNLTQEQRMSSLQDFKDGKVSYLLATD---------- 298
Query: 233 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 292
L S RG+D K V VIN+E P Y+HRIGRT RA
Sbjct: 299 ------------------LAS-----RGLDIKGVERVINYETPNQYDVYLHRIGRTARAG 335
Query: 293 NTGASVSLVSPDEMKIFEEIK 313
G++++LV + K+ +E +
Sbjct: 336 KKGSALTLVGESDRKLVKEAR 356
>gi|393220360|gb|EJD05846.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 450
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 145/308 (47%), Gaps = 44/308 (14%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLD 69
+ ++ + M D ALA P IV+ATPG + L +K FS +K LVLD
Sbjct: 110 IGVRCAVIVGGMNMVDQAVALAKRPHIVVATPGRLNDHLE----NTKGFSLRGIKFLVLD 165
Query: 70 EADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDV 129
EAD LL + + + VIP+ L SAT ++ V KL++ L NP V
Sbjct: 166 EADRLLDMDFGPIIDKILKVIPKERTTYLFSATMTTKVAKLQRASLTNPV-----RVEVS 220
Query: 130 KDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI 189
K + Q+++ + K + ++ + L Q +IFT T+ RL L L+ G
Sbjct: 221 KKYTTVSTLLQYYLFIPYKQKEVNLIHMCN-TLSQNSIIIFTRTVMDCQRLALILKTLGF 279
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
S L+ +L Q++RL L +F +G + L+ATD
Sbjct: 280 SSVPLHGQLSQSARLGALAKFKSGGRNILVATDIAS------------------------ 315
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIF 309
RG+D +V VIN+++P ++ Y+HR+GRT RA G S++LV+ ++++
Sbjct: 316 ---------RGLDIPSVDAVINYDIPSHSKDYIHRVGRTARAGRAGNSITLVTQYDVELI 366
Query: 310 EEIKSFVG 317
+ I++ +G
Sbjct: 367 QRIEAVIG 374
>gi|359448782|ref|ZP_09238296.1| ATP-dependent RNA helicase DeaD [Pseudoalteromonas sp. BSi20480]
gi|358045352|dbj|GAA74545.1| ATP-dependent RNA helicase DeaD [Pseudoalteromonas sp. BSi20480]
Length = 600
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 145/311 (46%), Gaps = 44/311 (14%)
Query: 2 ALIELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSD 61
A + KG ++V+ L S +AL I++ATPG + ++ G ++ D
Sbjct: 92 AFEQYAKGTRGVEVLALYGGQSYSIQLSALRRGAQIIVATPGRLIDHINRGTIKF----D 147
Query: 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
+L+ LVLDEAD +L G+ DD++ + PR Q L SAT + + ++NP +
Sbjct: 148 ALQALVLDEADEMLRMGFIDDVENIMEKTPREKQTCLFSATMPKQIQNISSKYMNNPEQV 207
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLK 181
+ ++ + Q FW + ++K I+ L+ E + A++F T + +L
Sbjct: 208 HI----SARNSTVSSVEQVFWNASVHKNK--AIVRFLEAEQYE-GAIVFVRTRNDTVQLA 260
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
LE+ G +A LN ++ Q +R ++ +G+ + +IATD
Sbjct: 261 ELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIATDVA----------------- 303
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
RG+D + VIN+++PQ++ YVHRIGRTGRA TG ++ V
Sbjct: 304 ----------------ARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFV 347
Query: 302 SPDEMKIFEEI 312
+E + + I
Sbjct: 348 KHNERYLLKNI 358
>gi|156502690|ref|YP_001428756.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953085|ref|ZP_06557706.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica URFT1]
gi|423050934|ref|YP_007009368.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
gi|156253293|gb|ABU61799.1| DEAD/DEAH box helicase family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|421951656|gb|AFX70905.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
holarctica F92]
Length = 441
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 43/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG + S ++ DSL VLDEAD +L G+ +DLK + ++P+ Q
Sbjct: 125 EILIATPGRLLDLYSQNAVKF----DSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT SS++ L L+NP ++ DV + + K Q+ + + + +K+ ++
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDKSNKINALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L +F +
Sbjct: 236 SLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RGID + VIN ++
Sbjct: 295 NVLVATDIA---------------------------------ARGIDIAQLPCVINLDLS 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 322 NVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
prausnitzii A2-165]
gi|257197409|gb|EEU95693.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii A2-165]
Length = 641
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 47/281 (16%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IA PG + + G+L +++I VLDEAD +L G+ D+K + A +PR Q
Sbjct: 125 DILIACPGRLNDLVGQGLLDL----SNIEIFVLDEADRMLDMGFVHDVKKVIAKLPRQRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ--FWISCSERDKLL- 152
L+ SAT ++++L ILH+P + + V D +QQ +++ + LL
Sbjct: 181 NLMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVDR-----IQQSLYFVEKGNKKFLLP 235
Query: 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
+++ LK E+V AL+F+ T A ++ L K GI +A ++ Q +R+ LE+F A
Sbjct: 236 WLIKNLKPEVV--NALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKA 293
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G L+ATD RGID + V N+
Sbjct: 294 GKTRVLVATDI---------------------------------AARGIDISELSHVFNY 320
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
++P+ YVHRIGRT RA G +VS +P+E + I+
Sbjct: 321 DLPEVPETYVHRIGRTARAGADGTAVSFCAPEEKEYLAGIE 361
>gi|383784621|ref|YP_005469191.1| DEAD/DEAH box helicase [Leptospirillum ferrooxidans C2-3]
gi|383083534|dbj|BAM07061.1| putative DEAD/DEAH box helicase domain protein [Leptospirillum
ferrooxidans C2-3]
Length = 437
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 134/282 (47%), Gaps = 45/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDS-LKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
DI++ATPG + + Q ++ S ++ILVLDEAD +L G+ D++ + +++P+
Sbjct: 129 DILVATPGRLLDHV-----QQRTLDLSHVEILVLDEADRMLDMGFIRDIRKIISLLPKTR 183
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYI 154
Q LL SAT S ++ L IL +P ++ + G ++V K I +RDK +
Sbjct: 184 QNLLFSATFSDEIKSLSSSILKDPILIEITPSGKPVEKVSQK------IYLVDRDKKRAV 237
Query: 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
L+ L + + L+FT T A RL L K GI S ++ Q +R H L EF G
Sbjct: 238 LSKLIKQHDWFQILVFTRTKHGANRLAEQLNKDGISSLAIHGNKSQGARTHALAEFKTGT 297
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ATD RGID + V+NF++
Sbjct: 298 LHVLVATDIA---------------------------------ARGIDISELPHVVNFDL 324
Query: 275 PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
P YVHRIGRT RA G ++SLV DE K+ E I+ +
Sbjct: 325 PNVPEDYVHRIGRTARAGAEGEAISLVCIDEHKLLEGIERLI 366
>gi|313205949|ref|YP_004045126.1| dead/deah box helicase domain-containing protein [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|383485266|ref|YP_005394178.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|386322068|ref|YP_006018230.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|416111966|ref|ZP_11592990.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|312445265|gb|ADQ81620.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|315022262|gb|EFT35290.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
RA-YM]
gi|325336611|gb|ADZ12885.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-GD]
gi|380459951|gb|AFD55635.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
Length = 371
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 145/311 (46%), Gaps = 43/311 (13%)
Query: 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 70
+ +K + + +P AL DI+IATPG + + G+L S S ++ILVLDE
Sbjct: 99 LNIKHLSIFGGVPQGKQERALNQGVDILIATPGRLLDLMQQGLL---SLSQ-IEILVLDE 154
Query: 71 ADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVK 130
AD +L G+ +D+K + +P+ Q L SAT + + + + IL NP +T+ V
Sbjct: 155 ADRMLDMGFVNDVKKILTKVPKKRQTLFFSATMPNSIRQFAETILDNPAEVTVTPVSSTA 214
Query: 131 DEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190
K ++Q + DK ++ +LK + + ++LIFT T A RL L + GI
Sbjct: 215 -----KTIEQSVYFVEKNDKTNLLINILK-DTSELRSLIFTRTKHGADRLVKQLGRTGIF 268
Query: 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250
+A ++ QN+R L++F LIATD
Sbjct: 269 AAAIHGNKSQNARQKALKDFKDNRISVLIATDI--------------------------- 301
Query: 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310
RGID + VIN+E+P YVHRIGRTGRA +G ++S +E K +
Sbjct: 302 ------AARGIDIDELPQVINYELPNVPETYVHRIGRTGRAGTSGNAISFCGTEERKDLK 355
Query: 311 EIKSFVGDDEN 321
I+ +G N
Sbjct: 356 NIQKLIGFTMN 366
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 135/288 (46%), Gaps = 53/288 (18%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI++ATPG + + G+L S SD ++ LVLDEAD +L G+ D+K + ++P Q
Sbjct: 125 DILVATPGRLLDLENQGLL---SLSD-IEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN-----VQQFWISCSERDK 150
LL SAT + D+ KL IL NP ++ E P+N V Q + K
Sbjct: 181 NLLFSATFNKDIKKLASSILTNPVLV----------EATPENTTAEKVDQKTYRVDKSRK 230
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++ + E + L+FT T A RL L+K GI SA ++ QN+R+ L F
Sbjct: 231 TEMLIKFIN-EGNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
+G L+ATD RG+D + VI
Sbjct: 290 KSGKIRVLVATDI---------------------------------AARGLDIPLLPYVI 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGD 318
N+E+P YVHRIGRTGRA +G ++SLV DE+ I+ +G+
Sbjct: 317 NYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYVRGIEKLLGE 364
>gi|410623999|ref|ZP_11334807.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola pallidula DSM
14239 = ACAM 615]
gi|410156339|dbj|GAC30181.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola pallidula DSM
14239 = ACAM 615]
Length = 414
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 139/287 (48%), Gaps = 43/287 (14%)
Query: 31 LAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90
L G D+++ATPG + + Q+ +F D L+ILVLDEAD +L G+ DD++ + ++
Sbjct: 120 LQGGLDVLVATPGRLIDLYNQ---QAINF-DRLEILVLDEADRVLDLGFIDDIRHIQTLL 175
Query: 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDK 150
P Q L+ SAT S ++ L K +L+NP ++ + D + + K QQ ER
Sbjct: 176 PSKRQTLMFSATFSKEIKSLAKGMLNNPLLIEV----DTANSALDKIKQQLHPVDKERKS 231
Query: 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
+ I + K + Q L+FT T A L + LEK I +A +++ Q++R L+ F
Sbjct: 232 EVLIHLIRKNKWHQ--VLVFTRTKLGADSLVVQLEKARISAASIHSNRTQHARTLALDGF 289
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G L+ATD RGID + V+
Sbjct: 290 RNGNVKVLVATDIAS---------------------------------RGIDISQLPCVV 316
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
NF++P YVHRIGRTGRA G +VSLVS DE K I+ +G
Sbjct: 317 NFDLPYVPEDYVHRIGRTGRAGTFGLAVSLVSEDESKQLNSIERVIG 363
>gi|333891675|ref|YP_004465550.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
gi|332991693|gb|AEF01748.1| ATP-dependent RNA helicase RhlE [Alteromonas sp. SN2]
Length = 457
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 134/281 (47%), Gaps = 43/281 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D++IATPG + ++ FS L+ LVLDEAD +L G+ D+K + ++P Q
Sbjct: 125 DVLIATPGRLLDLYQQNAVK---FSQ-LETLVLDEADRMLDMGFIHDIKRILKLLPTKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT SS++ L + I +NP +V + VQQ + + K ++
Sbjct: 181 TLLFSATFSSEITTLAQTITNNPE-----KVSTAPANTTVETVQQHLVPIDKSKKTAALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+L+K + K+ L+F+ T A R+ L + I SA ++ Q +R L EF +G
Sbjct: 236 SLIK-QNGWKQVLVFSRTKHGANRIADKLSRARIPSAAIHGNKSQGARTKALSEFKSGEI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
D L+ATD RGID + VIN ++P
Sbjct: 295 DVLVATDI---------------------------------AARGIDINELPIVINIDLP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
A YVHRIGRTGRA +G + S VS DE+ ++I++ +
Sbjct: 322 NTPADYVHRIGRTGRAGASGQAWSFVSIDELDQLKDIETLI 362
>gi|152060562|sp|A4RGD1.1|RRP3_MAGO7 RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 538
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 141/286 (49%), Gaps = 45/286 (15%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
AL P IV+ATPG + L ++K FS SLK LV+DEAD LL + L +
Sbjct: 224 ALGKKPHIVVATPGRLLDHLE----KTKGFSLRSLKFLVMDEADRLLDLDFGPILDKILK 279
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQ-FWISCSE 147
+PR + L SAT SS V+ L++ L +P ++ V +++ + +Q +I
Sbjct: 280 FLPRERRTFLFSATMSSKVESLQRASLRDPLKVS---VSSSQEKTVSTLIQNPLFIPHKH 336
Query: 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHIL 207
+D +Y++ L E K ++FT T++ A R+ + L + L+ +L Q+ RL L
Sbjct: 337 KD--VYLIYLAN-EFAGKTTIVFTRTVNEAQRVSILLRTLSFGAIPLHGQLSQSMRLGAL 393
Query: 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVH 267
+F A D L+ATD RG+D V
Sbjct: 394 NKFKARSRDILVATDV---------------------------------AARGLDIPEVD 420
Query: 268 TVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
VINF+MPQ++ Y+HR+GRT RA +G ++S+++ +++++ I+
Sbjct: 421 LVINFDMPQDSMTYIHRVGRTARAGRSGRAISIITQYDLELWLRIE 466
>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
Length = 485
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 146/294 (49%), Gaps = 43/294 (14%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
+L P I++ATPG + L +K FS +LK LV+DEAD LL + L +
Sbjct: 173 SLGKKPHIIVATPGRLLDHLEN----TKGFSLRNLKYLVMDEADRLLDLDFGPILDKILK 228
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER 148
V+PR + L SAT SS V+ L++ L NP ++ + K + + +Q + +
Sbjct: 229 VLPRERRTYLFSATMSSKVESLQRASLSNPLRVS---ISSNKYQTVATLLQSYLF-IPHK 284
Query: 149 DKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILE 208
K +Y++ LL E + A++FT T++ RL + L G S L+ +L Q+SRL L
Sbjct: 285 YKDVYLVYLLN-EYAGQSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALS 343
Query: 209 EFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268
+F + D L+ATD RG+D +V
Sbjct: 344 KFRSRSRDILVATDVA---------------------------------ARGLDIPSVDV 370
Query: 269 VINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDENE 322
V+NF++P ++ Y+HR+GRT RA +G + S+V+ +++++ I++ +G +E
Sbjct: 371 VLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYDIEVWLRIENALGKKLDE 424
>gi|261253372|ref|ZP_05945945.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417953129|ref|ZP_12596177.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260936763|gb|EEX92752.1| ATP-dependent RNA helicase RhlE [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342817661|gb|EGU52538.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 488
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 130/270 (48%), Gaps = 43/270 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
D+++ATPG + Q+ D L++LVLDEAD +L G+ D++ + V+P Q
Sbjct: 125 DVLVATPGRLLDLYQ----QNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILNVLPAKRQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
LL SAT S+++ +L K ++++P EV K+ ++Q +R K ++
Sbjct: 181 NLLFSATFSAEIRELAKGLVNDPV-----EVSVNKENSTAVTIEQSIYPADKRKKAPMLV 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
L+K + K+ L+F T A RL FL K GI +A ++ Q +R L +F +G
Sbjct: 236 KLIK-DGNWKQTLVFCRTKHGANRLAFFLNKEGITAAPIHGNKSQGARTRALADFKSGDV 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ATD RGID + V+N+E+P
Sbjct: 295 RVLVATDIA---------------------------------ARGIDIPQLPQVVNYELP 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
+ YVHRIGRTGRA G ++SLV DE
Sbjct: 322 HVSEDYVHRIGRTGRAGEVGRAISLVEADE 351
>gi|134301861|ref|YP_001121830.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421751661|ref|ZP_16188700.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis AS_713]
gi|421753517|ref|ZP_16190508.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 831]
gi|421757241|ref|ZP_16194123.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 80700103]
gi|421759101|ref|ZP_16195935.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70102010]
gi|424674420|ref|ZP_18111338.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70001275]
gi|134049638|gb|ABO46709.1| DEAD/DEAH box helicase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409086783|gb|EKM86896.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 831]
gi|409086998|gb|EKM87108.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis AS_713]
gi|409091165|gb|EKM91168.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70102010]
gi|409092696|gb|EKM92663.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 80700103]
gi|417434898|gb|EKT89830.1| ATP-dependent RNA helicase RhlE [Francisella tularensis subsp.
tularensis 70001275]
Length = 441
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 139/282 (49%), Gaps = 43/282 (15%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I+IATPG + S ++ DSL VLDEAD +L G+ +DLK + ++P+ Q
Sbjct: 125 EILIATPGRLLDLYSQNAVKF----DSLNTFVLDEADRMLDMGFINDLKKIHNLLPKKLQ 180
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL 155
L+ SAT SS++ L L+NP ++ DV + + K Q+ + + + +K+ ++
Sbjct: 181 TLMFSATFSSEIKNLANEFLNNPQFVS----ADVVNTTVKKITQKIY-TLDKSNKINALI 235
Query: 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+L+K + + + L+F+ T + A ++ L GI S+ ++ Q +R L +F +
Sbjct: 236 SLIKDQNLH-QVLVFSRTKNGANKISEKLNNAGISSSAIHGNKSQTARTKALADFKSNDI 294
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
+ L+ATD RGID + VIN ++
Sbjct: 295 NVLVATDIA---------------------------------ARGIDIAQLPCVINLDLS 321
Query: 276 QNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
A YVHRIGRTGRA G ++SLVS DE++ I+ +G
Sbjct: 322 NVAEDYVHRIGRTGRAGQEGLAISLVSADEVESLSNIEHLIG 363
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,321,903,761
Number of Sequences: 23463169
Number of extensions: 299979673
Number of successful extensions: 1006137
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 24110
Number of HSP's successfully gapped in prelim test: 2292
Number of HSP's that attempted gapping in prelim test: 931608
Number of HSP's gapped (non-prelim): 53148
length of query: 486
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 339
effective length of database: 8,910,109,524
effective search space: 3020527128636
effective search space used: 3020527128636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)