BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011428
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 128/286 (44%), Gaps = 51/286 (17%)
Query: 37 IVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD+++ + G++D + ++PR C
Sbjct: 213 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 268
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P ++ L ++E ++Q+++ CS RD+
Sbjct: 269 QMLLFSATFEDSVWKFAQKVVPDPNVIKLK-----REEETLDTIKQYYVLCSSRDEKFQA 323
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 324 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 383
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ T+ RGID + V VINF++
Sbjct: 384 EKVLVTTN---------------------------------VCARGIDVEQVSVVINFDL 410
Query: 275 PQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIK 313
P + G Y+HRIGRTGR G +V++V S M I I+
Sbjct: 411 PVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 456
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 128/286 (44%), Gaps = 51/286 (17%)
Query: 37 IVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD+++ + G++D + ++PR C
Sbjct: 162 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 217
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P ++ L ++E ++Q+++ CS RD+
Sbjct: 218 QMLLFSATFEDSVWKFAQKVVPDPNVIKLK-----REEETLDTIKQYYVLCSSRDEKFQA 272
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 273 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 332
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ T+ RGID + V VINF++
Sbjct: 333 EKVLVTTN---------------------------------VCARGIDVEQVSVVINFDL 359
Query: 275 PQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIK 313
P + G Y+HRIGRTGR G +V++V S M I I+
Sbjct: 360 PVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 405
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 128/286 (44%), Gaps = 51/286 (17%)
Query: 37 IVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD+++ + G++D + ++PR C
Sbjct: 183 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 238
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P ++ L ++E ++Q+++ CS RD+
Sbjct: 239 QMLLFSATFEDSVWKFAQKVVPDPNVIKLK-----REEETLDTIKQYYVLCSSRDEKFQA 293
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 294 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 353
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ T+ RGID + V VINF++
Sbjct: 354 EKVLVTTN---------------------------------VCARGIDVEQVSVVINFDL 380
Query: 275 PQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIK 313
P + G Y+HRIGRTGR G +V++V S M I I+
Sbjct: 381 PVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 426
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 128/286 (44%), Gaps = 51/286 (17%)
Query: 37 IVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD+++ + G++D + ++PR C
Sbjct: 146 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 201
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q LL SAT V K + ++ +P ++ L ++E ++Q+++ CS RD+
Sbjct: 202 QMLLFSATFEDSVWKFAQKVVPDPNVIKLK-----REEETLDTIKQYYVLCSSRDEKFQA 256
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+A+IF +T A L L K G + A+L+ E+ R ++E F G
Sbjct: 257 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK 316
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
L+ T+ RGID + V VINF++
Sbjct: 317 EKVLVTTN---------------------------------VCARGIDVEQVSVVINFDL 343
Query: 275 PQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIK 313
P + G Y+HRIGRTGR G +V++V S M I I+
Sbjct: 344 PVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 389
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 122 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 177
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT +V ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 178 VLISATLPHEVLEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 232
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+A+IF NT L + + + ++ ++PQ R I++EF +G
Sbjct: 233 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 292
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
LI+TD RG+D V +IN+++P
Sbjct: 293 VLISTDVW---------------------------------ARGLDVPQVSLIINYDLPN 319
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
N Y+HRIGR+GR G +V+ V D++++ +I+ +
Sbjct: 320 NRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQY 358
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 158 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 213
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 214 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 268
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+A+IF NT L + + + ++ ++PQ R I++EF +G
Sbjct: 269 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 328
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
LI+TD RG+D V +IN+++P
Sbjct: 329 VLISTD---------------------------------VWARGLDVPQVSLIINYDLPN 355
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 356 NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 394
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 215 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 269
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+A+IF NT L + + + ++ ++PQ R I++EF +G
Sbjct: 270 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 329
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
LI+TD RG+D V +IN+++P
Sbjct: 330 VLISTD---------------------------------VWARGLDVPQVSLIINYDLPN 356
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 357 NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 395
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 215 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 269
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+A+IF NT L + + + ++ ++PQ R I++EF +G
Sbjct: 270 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 329
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
LI+TD RG+D V +IN+++P
Sbjct: 330 VLISTD---------------------------------VWARGLDVPQVSLIINYDLPN 356
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 357 NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 395
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 137 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 192
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 193 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 247
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+A+IF NT L + + + ++ ++PQ R I++EF +G
Sbjct: 248 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 307
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
LI+TD RG+D V +IN+++P
Sbjct: 308 VLISTDVW---------------------------------ARGLDVPQVSLIINYDLPN 334
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
N Y+HRIGR+GR G +++ V D+++I +I+ +
Sbjct: 335 NRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 373
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 129/279 (46%), Gaps = 42/279 (15%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+V TPG + + L++++ +K+LVLDEAD +L+ G+++ + + +P Q
Sbjct: 122 VVAGTPGRVFDMIRRRSLRTRA----IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 177
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
+L+SAT ++ ++ + +P + + +DE+ + ++QF+++ +
Sbjct: 178 VLISATLPHEILEMTNKFMTDPIRILVK-----RDELTLEGIKQFFVAVEREEWKFDTLC 232
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+A+IF NT L + + + ++ ++PQ R I++EF +G
Sbjct: 233 DLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR 292
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
LI+TD RG+D V +IN+++P
Sbjct: 293 VLISTDVW---------------------------------ARGLDVPQVSLIINYDLPN 319
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
N Y+HRIGR+GR G +V+ V D++++ +I+ +
Sbjct: 320 NRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLRDIEQY 358
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 136/282 (48%), Gaps = 48/282 (17%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
IV+ TPG + + Q + F +D +K+ +LDEAD +LS G+++ + + ++P Q
Sbjct: 142 IVVGTPGRVFDNI-----QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 196
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
+L+SAT +DV ++ + NP + + KDE+ + ++QF+++ E +
Sbjct: 197 VVLLSATMPNDVLEVTTKFMRNPVRILVK-----KDELTLEGIKQFYVNVEEEEYKYECL 251
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT L KL +KF + + + ++LPQ R I++EF +G
Sbjct: 252 TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSA--IYSDLPQQERDTIMKEFRSG 309
Query: 214 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 273
LI+TD + RGID + V VIN++
Sbjct: 310 SSRILISTD---------------------------------LLARGIDVQQVSLVINYD 336
Query: 274 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+P N Y+HRIGR GR G +++ V+ +++ E++ F
Sbjct: 337 LPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKF 378
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 129/319 (40%), Gaps = 54/319 (16%)
Query: 13 LKVVQLTSSMPASDLRAALAG----PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68
LK S + +D RAA+ P+IVIATPG + L S F + VL
Sbjct: 125 LKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVL 181
Query: 69 DEADLLLSYGYEDDLKALSAVIPR-------GCQCLLMSATSSSDVDKLKKLILHNPYIL 121
DEAD LL G+ DDL+ +S ++ + LL SAT V KL I++ L
Sbjct: 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECL 241
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQK----KALIFTNTIDM- 176
L V + E + Q IS + ++ KA+IF T+
Sbjct: 242 FLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFT 301
Query: 177 AFRLKLFLEKFGIKSAIL--NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 234
+F + +F IL + ++ QN R +++ F L+ TD
Sbjct: 302 SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------------ 349
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
G RG+DF NVH V+ +P A Y+HRIGRT R+
Sbjct: 350 --------------------VG-ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKE 388
Query: 295 GASVSLVSPDEMKIFEEIK 313
G+SV + DE+ E++
Sbjct: 389 GSSVLFICKDELPFVRELE 407
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 128/319 (40%), Gaps = 54/319 (16%)
Query: 13 LKVVQLTSSMPASDLRAALAG----PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68
LK S + +D RAA+ P+IVIATPG + L S F + VL
Sbjct: 176 LKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVL 232
Query: 69 DEADLLLSYGYEDDLKALSAVIPR-------GCQCLLMSATSSSDVDKLKKLILHNPYIL 121
DEAD LL G+ DDL+ +S ++ + LL SAT V KL I++ L
Sbjct: 233 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECL 292
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQK----KALIFTNTIDM- 176
L V + E + Q IS + ++ KA+IF T+
Sbjct: 293 FLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFT 352
Query: 177 AFRLKLFLEKFGIKSAIL--NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 234
+F + +F IL + ++ QN R +++ F L+ TD
Sbjct: 353 SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVG---------- 402
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
RG+DF NVH V+ +P A Y+HRIGRT R+
Sbjct: 403 -----------------------ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKE 439
Query: 295 GASVSLVSPDEMKIFEEIK 313
G+SV + DE+ E++
Sbjct: 440 GSSVLFICKDELPFVRELE 458
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 128/319 (40%), Gaps = 54/319 (16%)
Query: 13 LKVVQLTSSMPASDLRAALAGP----PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68
LK S + +D RAA+ P+IVIATPG + L S F + VL
Sbjct: 125 LKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEK---YSNKFFRFVDYKVL 181
Query: 69 DEADLLLSYGYEDDLKALSAVIPR-------GCQCLLMSATSSSDVDKLKKLILHNPYIL 121
DEAD LL G+ DDL+ +S ++ + LL SAT V KL I++ L
Sbjct: 182 DEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECL 241
Query: 122 TLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQK----KALIFTNTIDM- 176
L V + E + Q IS + ++ KA+IF T+
Sbjct: 242 FLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFT 301
Query: 177 AFRLKLFLEKFGIKSAIL--NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 234
+F + +F IL + ++ QN R +++ F L+ TD
Sbjct: 302 SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVG---------- 351
Query: 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294
RG+DF NVH V+ +P A Y+HRIGRT R+
Sbjct: 352 -----------------------ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKE 388
Query: 295 GASVSLVSPDEMKIFEEIK 313
G+SV + DE+ E++
Sbjct: 389 GSSVLFICKDELPFVRELE 407
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 115/269 (42%), Gaps = 44/269 (16%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
I++ TPG + L + SD + ++DEAD +LS ++ ++ + + +P Q
Sbjct: 142 ILVGTPG---RVLDLASRKVADLSDC-SLFIMDEADKMLSRDFKTIIEQILSFLPPTHQS 197
Query: 97 LLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXX 156
LL SAT V + LH PY + L E E+ K + Q++ ER K
Sbjct: 198 LLFSATFPLTVKEFMVKHLHKPYEINLME------ELTLKGITQYYAFVEERQKLHCLNT 251
Query: 157 XXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216
+ +A+IF N+ + L + G +A + Q R + EF G
Sbjct: 252 LFSKLQIN-QAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR 310
Query: 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ 276
L+ +D + RGID + V+ VINF+ P+
Sbjct: 311 TLVCSD---------------------------------LLTRGIDIQAVNVVINFDFPK 337
Query: 277 NAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
A Y+HRIGR+GR + G +++L++ ++
Sbjct: 338 TAETYLHRIGRSGRFGHLGLAINLINWND 366
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 125/306 (40%), Gaps = 53/306 (17%)
Query: 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSL 63
IE KG LK+ ++ AL +IV+ TPG + ++ G L K+ +
Sbjct: 94 IESLKGNKNLKIAKIYGGKAIYPQIKALKNA-NIVVGTPGRILDHINRGTLNLKN----V 148
Query: 64 KILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123
K +LDEAD L+ G+ D++ + + + LL SAT ++ L K
Sbjct: 149 KYFILDEADEXLNXGFIKDVEKILNACNKDKRILLFSATXPREILNLAK----------- 197
Query: 124 PEVGDVK--DEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLK 181
GD I N++Q ++ +E ++ L+F T L
Sbjct: 198 KYXGDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFY--GLVFCKTKRDTKELA 255
Query: 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSR 241
L G K+ ++ +L Q+ R ++ F LIATD V SR
Sbjct: 256 SXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD---------------VXSR 300
Query: 242 KSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
GID +++ VIN+ +PQN Y HRIGRTGRA G ++S++
Sbjct: 301 ------------------GIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISII 342
Query: 302 SPDEMK 307
+ E K
Sbjct: 343 NRREYK 348
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 133/282 (47%), Gaps = 48/282 (17%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
IV+ TPG + + Q + F +D +K +LDEAD LS G+++ + + ++P Q
Sbjct: 141 IVVGTPGRVFDNI-----QRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQ 195
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
+L+SAT +DV ++ NP + + KDE+ + ++QF+++ E +
Sbjct: 196 VVLLSATXPNDVLEVTTKFXRNPVRILVK-----KDELTLEGIKQFYVNVEEEEYKYECL 250
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213
+A+IF NT L KL +KF + SAI ++LPQ R I +EF +G
Sbjct: 251 TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTV-SAIY-SDLPQQERDTIXKEFRSG 308
Query: 214 LFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFE 273
LI+TD + RGID + V VIN++
Sbjct: 309 SSRILISTD---------------------------------LLARGIDVQQVSLVINYD 335
Query: 274 MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+P N Y+HRIGR GR G +++ V+ +++ E++ F
Sbjct: 336 LPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAXRELEKF 377
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 114/280 (40%), Gaps = 46/280 (16%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL---SAVIPRG 93
+++ATPG + + G K D K LVLDEAD +L G+E ++ + + P+G
Sbjct: 154 LLVATPGRLVDMMERG----KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKG 209
Query: 94 CQ-CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
+ ++ SAT ++ L + L L + VG + + K V W+ E DK
Sbjct: 210 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV---WV--EESDKRS 264
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
L+F T A L+ FL G ++ + Q R L +F +
Sbjct: 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 324
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G L+AT RG+D NV VINF
Sbjct: 325 GKSPILVATAVA---------------------------------ARGLDISNVKHVINF 351
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312
++P + YVHRIGRTGR N G + S + + I +++
Sbjct: 352 DLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDL 391
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 118/269 (43%), Gaps = 58/269 (21%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DIV+ATPG + S GV+ SF +I+++DEADL+ G+ DD+K + A
Sbjct: 107 DIVVATPGRLLDLWSKGVIDLSSF----EIVIIDEADLMFEMGFIDDIKIILAQTSNRKI 162
Query: 96 CLLMSATSSSDVDK-LKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
L SAT ++ K +K I + I + +V+ + + +V+ W S + +
Sbjct: 163 TGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFV--HVKDDWRSKVQALRENK- 219
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRL-KLFLEKFGIKSAI-LNAELPQNSRLHILEEFNA 212
K ++F T + +L +LF +AI L +LPQ+ R ++ F
Sbjct: 220 ---------DKGVIVFVRTRNRVAKLVRLF------DNAIELRGDLPQSVRNRNIDAFRE 264
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
G +D LI TD RG+D V VINF
Sbjct: 265 GEYDMLITTDVAS---------------------------------RGLDIPLVEKVINF 291
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLV 301
+ PQ+ Y+HRIGRTGR G +++ +
Sbjct: 292 DAPQDLRTYIHRIGRTGRMGRKGEAITFI 320
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 131/284 (46%), Gaps = 48/284 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 160 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 215
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+ +
Sbjct: 216 QVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDT 270
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 271 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 327
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
+G LI TD + RGID + V VIN
Sbjct: 328 SGSSRVLITTD---------------------------------LLARGIDVQQVSLVIN 354
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 355 YDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 398
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 115/286 (40%), Gaps = 53/286 (18%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGCQ 95
IVI TPG + + L ++ +K+ VLDEAD +L G D + ++PR Q
Sbjct: 238 IVIGTPGTVMDLMKRRQLDARD----IKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQ 293
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXX 155
+L SAT S V+K + N + L +E+ + ++Q ++ C +
Sbjct: 294 IVLFSATFSERVEKYAERFAPNANEIRLK-----TEELSVEGIKQLYMDCQSEEHKYNVL 348
Query: 156 XXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF 215
+++IF D A + + G A L L R I++ F G
Sbjct: 349 VELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTS 408
Query: 216 DYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP 275
L+ T+ + RGID V+ V+N++MP
Sbjct: 409 KVLVTTN---------------------------------VIARGIDVSQVNLVVNYDMP 435
Query: 276 QNAAG------YVHRIGRTGRAYNTGASVSLV----SPDEMKIFEE 311
+ AG Y+HRIGRTGR G S++ V S +EM +E
Sbjct: 436 LDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQE 481
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 52/293 (17%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGCQ 95
+++ TPG + + ++Q + +KI VLDEAD +L G D + +P+ Q
Sbjct: 124 VIVGTPGTVLDLMRRKLMQLQK----IKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 179
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKXXXX 154
+L SAT + V + K I+ N L L +EV ++Q ++ C +E DK
Sbjct: 180 LVLFSATFADAVRQYAKKIVPNANTLELQ-----TNEVNVDAIKQLYMDCKNEADKFDVL 234
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+ ++IF T A L L+ G + +IL+ +L R ++++F G
Sbjct: 235 TELYGVMTI-GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR 293
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
LI T+ + RGID V V+N+++
Sbjct: 294 SKVLITTN---------------------------------VLARGIDIPTVSMVVNYDL 320
Query: 275 PQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIKSFVGDDE 320
P A G Y+HRIGRTGR G ++S V + I I+ + GD E
Sbjct: 321 PTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIE 373
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 52/293 (17%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGCQ 95
+++ TPG + + ++Q + +KI VLDEAD +L G D + +P+ Q
Sbjct: 124 VIVGTPGTVLDLMRRKLMQLQK----IKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 179
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC-SERDKXXXX 154
+L SAT + V + K I+ N L L +EV ++Q ++ C +E DK
Sbjct: 180 LVLFSATFADAVRQYAKKIVPNANTLELQ-----TNEVNVDAIKQLYMDCKNEADKFDVL 234
Query: 155 XXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214
+ ++IF T A L L+ G + +IL+ +L R ++++F G
Sbjct: 235 TELYGLMTI-GSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR 293
Query: 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM 274
LI T+ + RGID V V+N+++
Sbjct: 294 SKVLITTN---------------------------------VLARGIDIPTVSMVVNYDL 320
Query: 275 PQNAAG------YVHRIGRTGRAYNTGASVSLV-SPDEMKIFEEIKSFVGDDE 320
P A G Y+HRIGRTGR G ++S V + I I+ + GD E
Sbjct: 321 PTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIE 373
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 131/284 (46%), Gaps = 48/284 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P I++ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 134 PHIIVGTPGRVFDMLNRRYLSPKY----IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 189
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXX 154
Q +L+SAT SDV ++ K + +P + + K+E+ + ++QF+I+ +
Sbjct: 190 QVVLLSATMPSDVLEVTKKFMRDPIRILVK-----KEELTLEGIRQFYINVEREEWKLDT 244
Query: 155 XXXXXXXXVQKKALIFTNT---IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211
+A+IF NT +D K+ F + + ++ ++ Q R I+ EF
Sbjct: 245 LCDLYETLTITQAVIFINTRRKVDWLTE-KMHARDFTVSA--MHGDMDQKERDVIMREFR 301
Query: 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271
+G LI TD + RGID + V VIN
Sbjct: 302 SGSSRVLITTD---------------------------------LLARGIDVQQVSLVIN 328
Query: 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+++P N Y+HRIGR GR G ++++V+ ++ + +I++F
Sbjct: 329 YDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 372
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 114/275 (41%), Gaps = 54/275 (19%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLK-ALSAVIPRG-C 94
+VIATPG + + + +F D+ + +VLDEAD +L G+ +D++ ++ V R
Sbjct: 182 VVIATPGRLLDFVDRTFI---TFEDT-RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH 237
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVG----DVKDEVIPKNVQQFWISCSERDK 150
Q L+ SAT ++ ++ L N + + VG DVK + N ++R K
Sbjct: 238 QTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN------KYAKRSK 291
Query: 151 XXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210
++F T A L FL + + ++ + Q+ R L +F
Sbjct: 292 LIEILSEQA-----DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDF 346
Query: 211 NAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270
G LIAT RG+D KN+ VI
Sbjct: 347 KNGSMKVLIATSVAS---------------------------------RGLDIKNIKHVI 373
Query: 271 NFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305
N++MP YVHRIGRTGR N G + S P++
Sbjct: 374 NYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 33/151 (21%)
Query: 167 ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQT 226
+IF T + +L L+ G ++ + Q R ++ EF G + YL+ATD
Sbjct: 38 CIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD---- 93
Query: 227 KEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIG 286
RGID +N+ VIN+++P YVHR G
Sbjct: 94 -----------------------------VAARGIDIENISLVINYDLPLEKESYVHRTG 124
Query: 287 RTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
RTGRA N G ++S V+ E + +I+ ++G
Sbjct: 125 RTGRAGNKGKAISFVTAFEKRFLADIEEYIG 155
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 47/232 (20%)
Query: 117 NPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDM 176
+PY + L E E+ K V Q++ +ER K + +++IF N+
Sbjct: 4 DPYEINLME------ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQI-NQSIIFCNSSQR 56
Query: 177 AFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGG 236
L + + G ++A++ Q R + +F GL L+ TD
Sbjct: 57 VELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD-------------- 102
Query: 237 HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 296
RGID + V+ VINF+ P+ A Y+HRIGR+GR + G
Sbjct: 103 -------------------LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGL 143
Query: 297 SVSLVSPDEMKIFEEIKSFVGDDENEDSNIIAPFPLLAQNAVESLRYRAEDV 348
+++L++ D+ + I+ +G + I P P ++ Y +E V
Sbjct: 144 AINLITYDDRFNLKSIEEQLGTE-------IKPIPSNIDKSLYVAEYHSEPV 188
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 122/282 (43%), Gaps = 46/282 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL-SYGYEDDLKALSAVIPR 92
P IV+ TPG + + ++KS + +K +LDEAD +L D++ + + P
Sbjct: 128 PHIVVGTPGRI-----LALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPH 182
Query: 93 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
Q ++ SAT S ++ + + + +P + + D + ++ +QQ+++ + +K
Sbjct: 183 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFV----DDETKLTLHGLQQYYVKLKDNEKNR 238
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
+ +IF ++ L L + + ++ +PQ RL ++F
Sbjct: 239 KLFDLLDVLEF-NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 297
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
L+AT+ FG RG+D + V+ N+
Sbjct: 298 FQRRILVATN-------------------------------LFG--RGMDIERVNIAFNY 324
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 313
+MP+++ Y+HR+ R GR G +++ VS ++ KI +++
Sbjct: 325 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 366
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 121/282 (42%), Gaps = 46/282 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL-SYGYEDDLKALSAVIPR 92
P IV+ TPG + + ++KS + +K +LDE D +L D++ + + P
Sbjct: 129 PHIVVGTPGRI-----LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183
Query: 93 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
Q ++ SAT S ++ + + + +P + + D + ++ +QQ+++ + +K
Sbjct: 184 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFV----DDETKLTLHGLQQYYVKLKDNEKNR 239
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
+ +IF ++ L L + + ++ +PQ RL ++F
Sbjct: 240 KLFDLLDVLEF-NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 298
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
L+AT+ FG RG+D + V+ N+
Sbjct: 299 FQRRILVATN-------------------------------LFG--RGMDIERVNIAFNY 325
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 313
+MP+++ Y+HR+ R GR G +++ VS ++ KI +++
Sbjct: 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 121/282 (42%), Gaps = 46/282 (16%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLL-SYGYEDDLKALSAVIPR 92
P IV+ TPG + + ++KS + +K +LDE D +L D++ + + P
Sbjct: 129 PHIVVGTPGRI-----LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183
Query: 93 GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKXX 152
Q ++ SAT S ++ + + + +P + + D + ++ +QQ+++ + +K
Sbjct: 184 EKQVMMFSATLSKEIRPVCRKFMQDPMEIFV----DDETKLTLHGLQQYYVKLKDNEKNR 239
Query: 153 XXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212
+ +IF ++ L L + + ++ +PQ RL ++F
Sbjct: 240 KLFDLLDVLEF-NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 298
Query: 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272
L+AT+ FG RG+D + V+ N+
Sbjct: 299 FQRRILVATN-------------------------------LFG--RGMDIERVNIAFNY 325
Query: 273 EMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 313
+MP+++ Y+HR+ R GR G +++ VS ++ KI +++
Sbjct: 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 367
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 33/151 (21%)
Query: 166 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 225
++++F + L +L + GI + L E+ Q R ++ G + L+ATD
Sbjct: 32 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVA- 90
Query: 226 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
RGID +V V NF+MP++ Y+HRI
Sbjct: 91 --------------------------------ARGIDIPDVSHVFNFDMPRSGDTYLHRI 118
Query: 286 GRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316
GRT RA G ++SLV + + ++ ++
Sbjct: 119 GRTARAGRKGTAISLVEAHDHLLLGKVGRYI 149
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+DF NVH V+ +P A Y+HRIGRT R+ G+SV + DE+ E++
Sbjct: 98 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 152
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+DF NVH V+ +P A Y+HRIGRT R+ G+SV + DE+ E++
Sbjct: 98 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 152
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 30 ALAGPPDIVIATPGCMPKCLSTGVLQSKSFS-DSLKILVLDEADLLLSYGYEDDLKALSA 88
ALA P I+IATPG + L +K F+ +LK LV+DEAD +L+ +E ++ +
Sbjct: 157 ALAKKPHIIIATPGRLIDHLE----NTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 212
Query: 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNP 118
VIPR + L SAT + V KL++ L NP
Sbjct: 213 VIPRDRKTFLFSATMTKKVQKLQRAALKNP 242
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIK 313
RG+DF NVH V+ +P A Y+HRIGRT R+ G+SV + DE+ E++
Sbjct: 98 RGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELE 152
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
EL LKVV + + AL D V+ATPG L GVL ++
Sbjct: 91 ELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDL----SRVE 146
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
+ VLDEAD +LS G+E++++AL + P Q LL SAT S +L + + NP ++
Sbjct: 147 VAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLK 64
EL LKVV + + AL D V+ATPG L GVL ++
Sbjct: 91 ELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDL----SRVE 146
Query: 65 ILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYIL 121
+ VLDEAD +LS G+E++++AL + P Q LL SAT S +L + + NP ++
Sbjct: 147 VAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLI 203
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 43/197 (21%)
Query: 137 NVQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA 196
N++Q+++ C R +A+IF T A L + + + G + ++L+
Sbjct: 7 NIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSG 66
Query: 197 ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFG 256
EL R I++ F G LI T+
Sbjct: 67 ELTVEQRASIIQRFRDGKEKVLITTN---------------------------------V 93
Query: 257 VVRGIDFKNVHTVINFEMPQNAA------GYVHRIGRTGRAYNTGASVSLVSPDE----M 306
RGID K V V+NF++P Y+HRIGRTGR G + +++ DE M
Sbjct: 94 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLM 153
Query: 307 KIFEEIKSFVGDDENED 323
KI + S + ED
Sbjct: 154 KIQDHFNSSIKQLNAED 170
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 259 RGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308
RG+D NV VINF++P + YVHRIGRTGR N G + S + + I
Sbjct: 108 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 157
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 188 GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 247
G+++ ++ Q R +E F G D L+ATD
Sbjct: 78 GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS---------------------- 115
Query: 248 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 302
+G+DF + VIN++MP+ YVHRIGRTG + NTG + + ++
Sbjct: 116 -----------KGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
+I++ TPG + + + V SF + L++LVLDEAD +L G+ D + A+ +P+
Sbjct: 148 NILVCTPGRLLQHMDETV----SFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKR 203
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPE 125
Q LL SAT + V L +L L NP + + E
Sbjct: 204 QTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 42/198 (21%)
Query: 131 DEVIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+EV ++Q ++ C +E DK + ++IF T A L L+ G
Sbjct: 2 NEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTI-GSSIIFVATKKTANVLYGKLKSEGH 60
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ +IL+ +L R ++++F G LI T+
Sbjct: 61 EVSILHGDLQTQERDRLIDDFREGRSKVLITTN--------------------------- 93
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-S 302
+ RGID V V+N+++P A G Y+HRIGRTGR G ++S V
Sbjct: 94 ------VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHD 147
Query: 303 PDEMKIFEEIKSFVGDDE 320
+ I I+ + GD E
Sbjct: 148 KNSFNILSAIQKYFGDIE 165
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 42/198 (21%)
Query: 131 DEVIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+EV ++Q + C +E DK + ++IF T A L L+ G
Sbjct: 3 NEVNVDAIKQLYXDCKNEADKFDVLTELYGVXTI-GSSIIFVATKKTANVLYGKLKSEGH 61
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ +IL+ +L R ++++F G LI T+
Sbjct: 62 EVSILHGDLQTQERDRLIDDFREGRSKVLITTN--------------------------- 94
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-S 302
+ RGID V V+N+++P A G Y+HRIGRTGR G ++S V
Sbjct: 95 ------VLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHD 148
Query: 303 PDEMKIFEEIKSFVGDDE 320
+ I I+ + GD E
Sbjct: 149 KNSFNILSAIQKYFGDIE 166
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 42/198 (21%)
Query: 131 DEVIPKNVQQFWISC-SERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRLKLFLEKFGI 189
+EV ++Q + C +E DK + ++IF T A L L+ G
Sbjct: 4 NEVNVDAIKQLYXDCKNEADKFDVLTELYGLXTI-GSSIIFVATKKTANVLYGKLKSEGH 62
Query: 190 KSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249
+ +IL+ +L R ++++F G LI T+
Sbjct: 63 EVSILHGDLQTQERDRLIDDFREGRSKVLITTN--------------------------- 95
Query: 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAG------YVHRIGRTGRAYNTGASVSLV-S 302
+ RGID V V+N+++P A G Y+HRIGRTGR G ++S V
Sbjct: 96 ------VLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHD 149
Query: 303 PDEMKIFEEIKSFVGDDE 320
+ I I+ + GD E
Sbjct: 150 KNSFNILSAIQKYFGDIE 167
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 37 IVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD+++ + G++D + ++PR C
Sbjct: 213 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 268
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTL 123
Q LL SAT V K + ++ +P ++ L
Sbjct: 269 QMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
IV+ TPG + + Q + F +D +K+ +LDEAD +LS G+++ + + ++P Q
Sbjct: 134 IVVGTPGRVFDNI-----QRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 188
Query: 96 CLLMSATSSSDVDKLKKLILHNP 118
+L+SAT +DV ++ + NP
Sbjct: 189 VVLLSATMPNDVLEVTTKFMRNP 211
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSF-SDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
IV+ TPG + +Q + F +D +K+ +LDEAD +LS G+++ + + ++P Q
Sbjct: 141 IVVGTPG---RVFDN--IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQ 195
Query: 96 CLLMSATSSSDVDKLKKLILHNP 118
+L+SAT +DV ++ + NP
Sbjct: 196 VVLLSATMPNDVLEVTTKFMRNP 218
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 37 IVIATPG-CMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGC 94
IVI TPG + C + K +K+ VLDEAD+++ + G++D + ++PR C
Sbjct: 146 IVIGTPGTVLDWCSKLKFIDPKK----IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 201
Query: 95 QCLLMSATSSSDVDKLKKLILHNPYILTL 123
Q LL SAT V K + ++ +P ++ L
Sbjct: 202 QMLLFSATFEDSVWKFAQKVVPDPNVIKL 230
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 32 AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91
A P IV+ TPG + L+ L K +K+ VLDEAD +LS G++D + + +
Sbjct: 147 AEAPHIVVGTPGRVFDMLNRRYLSPKW----IKMFVLDEADEMLSRGFKDQIYEIFQKLN 202
Query: 92 RGCQCLLMSATSSSDVDKLKKLILHNP 118
Q +L+SAT +DV ++ K + +P
Sbjct: 203 TSIQVVLLSATMPTDVLEVTKKFMRDP 229
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 37/180 (20%)
Query: 138 VQQFWISCSERDKXXXXXXXXXXXXVQKKALIFTNTIDMAFRL--KLFLEKFGIKSAILN 195
++QF+++ E + +A+IF NT L KL +KF + SAI
Sbjct: 4 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTV-SAIY- 61
Query: 196 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEF 255
++LPQ R I++EF +G LI+TD
Sbjct: 62 SDLPQQERDTIMKEFRSGSSRILISTD--------------------------------- 88
Query: 256 GVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315
+ RGID + V VIN+++P N Y+HRIGR GR G +++ V+ +++ E++ F
Sbjct: 89 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKF 148
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I++ATPG + + +L+ LV+DEAD +L G+E++LK + ++P Q
Sbjct: 178 NIIVATPGRLLDHMQN---TPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQ 234
Query: 96 CLLMSATSSSDVDKLKKLIL 115
+L SAT + V+ L ++ L
Sbjct: 235 TMLFSATQTRKVEDLARISL 254
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 255 FGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS-PDEMKIFEEIK 313
FG RG+D + V+ N++MP+++ Y+HR+ R GR G +++ VS ++ KI +++
Sbjct: 91 FG--RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQ 148
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQC 96
+VIATPG + + GV + D ++++VLDEAD LLS + ++ + +P+ Q
Sbjct: 125 VVIATPGRILDLIKKGVAKV----DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQI 180
Query: 97 LLMSATSSSDVDKLKKLILHNPY 119
LL SAT V K L PY
Sbjct: 181 LLYSATFPLSVQKFMNSHLEKPY 203
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGC 94
P IVI TPG + + L + ILV+DEADL L G+ D+ ++A P+
Sbjct: 127 PHIVIGTPGRINDFIREQALDVHT----AHILVVDEADLXLDXGFITDVDQIAARXPKDL 182
Query: 95 QCLLMSATSSSDVDKLKKLILHNP 118
Q L+ SAT + K NP
Sbjct: 183 QXLVFSATIPEKLKPFLKKYXENP 206
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL--SAVIPRGC 94
+++ATPG L + ++K + K +VLDEAD +L G+E ++ + + +P G
Sbjct: 153 LLVATPGR----LVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGI 208
Query: 95 --QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEV 133
Q L+ SAT ++ KL L+N +T+ VG D +
Sbjct: 209 NRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSI 249
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 10 QVQLKVVQLTSSMPASDLRAALAG-------------PPDIVIATPGCMPKCLSTGVLQS 56
Q+Q V+ L M AS A + G P I++ TPG + L+ L
Sbjct: 98 QIQXVVMALGDYMGAS-CHACIGGTNVRAEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSP 156
Query: 57 KSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILH 116
+ + VLDEAD +LS G+ D + + + Q +L+SAT SDV ++ +
Sbjct: 157 XY----IXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQVVLLSATMPSDVLEVTXXFMR 212
Query: 117 NP 118
+P
Sbjct: 213 DP 214
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 33/152 (21%)
Query: 166 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 225
+A++FT T + L + G + L+ ++ Q R ++ F G L+ATD
Sbjct: 30 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVA- 88
Query: 226 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
RG+D V V+++ MP A Y HR
Sbjct: 89 --------------------------------ARGLDIPQVDLVVHYRMPDRAEAYQHRS 116
Query: 286 GRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
GRTGRA G V L P E + E ++ VG
Sbjct: 117 GRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I IATPG + L G K+ LVLDEAD +L G+E ++ + I Q
Sbjct: 168 EICIATPGRLIDFLECG----KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 223
Query: 96 CLLMSATSSSDVDKLKKLILHNPYI 120
L+ SAT +V +L + L + YI
Sbjct: 224 TLMWSATWPKEVRQLAEDFLKD-YI 247
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL-SYGYEDDLKALSAVIPRGCQ 95
+++ TPG + + ++Q + +KI VLDEAD +L G D + +P+ Q
Sbjct: 141 VIVGTPGTVLDLMRRKLMQLQK----IKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQ 196
Query: 96 CLLMSATSSSDVDKLKKLILHNPYILTL 123
+L SAT + V + K I+ N L L
Sbjct: 197 LVLFSATFADAVRQYAKKIVPNANTLEL 224
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 33/152 (21%)
Query: 166 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQ 225
+A++FT T + L + G + L+ +L Q R +L F G L+ATD
Sbjct: 33 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA- 91
Query: 226 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRI 285
RG+D V V+++ +P A Y HR
Sbjct: 92 --------------------------------ARGLDIPQVDLVVHYRLPDRAEAYQHRS 119
Query: 286 GRTGRAYNTGASVSLVSPDEMKIFEEIKSFVG 317
GRTGRA G V L P E + E ++ VG
Sbjct: 120 GRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
+I IATPG + L G K+ LVLDEAD +L G+E ++ + I Q
Sbjct: 154 EICIATPGRLIDFLECG----KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 209
Query: 96 CLLMSATSSSDVDKLKKLILHNPYI 120
L+ SAT +V +L + L + YI
Sbjct: 210 TLMWSATWPKEVRQLAEDFLKD-YI 233
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 33/142 (23%)
Query: 165 KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 224
K +I+ N+ L+ GI +A +A L N R + E+F ++AT
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT--- 293
Query: 225 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHR 284
FG+ GI+ NV V++F++P+N Y
Sbjct: 294 ----------------------------VAFGM--GINKPNVRFVVHFDIPRNIESYYQE 323
Query: 285 IGRTGRAYNTGASVSLVSPDEM 306
GR GR ++ P +M
Sbjct: 324 TGRAGRDGLPAEAMLFYDPADM 345
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 33/126 (26%)
Query: 165 KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 224
K +I+ N+ L+ GI +A +A L N R + E+F ++AT
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT--- 293
Query: 225 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHR 284
FG GI+ NV V++F++P+N Y
Sbjct: 294 ----------------------------VAFGX--GINKPNVRFVVHFDIPRNIESYYQE 323
Query: 285 IGRTGR 290
GR GR
Sbjct: 324 TGRAGR 329
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 36 DIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQ 95
DI+IATPG + + +S + LV+DEAD +L +E ++ + + Q
Sbjct: 145 DIIIATPGRLNDLQMNNSVNLRSIT----YLVIDEADKMLDMEFEPQIRKILLDVRPDRQ 200
Query: 96 CLLMSATSSSDVDKLKKLILHNPYIL 121
++ SAT V +L L +P I+
Sbjct: 201 TVMTSATWPDTVRQLALSYLKDPMIV 226
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 50/133 (37%), Gaps = 41/133 (30%)
Query: 166 KALIFTNTIDMAFRLKLFLEKFGIKSAILNAE--------LPQNSRLHILEEFNAGLFDY 217
K ++FTN + A ++ L K GIK+ + L Q + IL+EF G F+
Sbjct: 363 KIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422
Query: 218 LIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQN 277
L+AT + G+D V V+ +E +
Sbjct: 423 LVATSVGE---------------------------------EGLDVPEVDLVVFYEPVPS 449
Query: 278 AAGYVHRIGRTGR 290
A + R GRTGR
Sbjct: 450 AIRSIQRRGRTGR 462
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG-YEDDLKALSAVIPRGCQ 95
I + +PG + + + L S+++ +LDEAD LL G +++ + + + +P Q
Sbjct: 145 IAVGSPGRIKQLIELDYLNP----GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQ 200
Query: 96 CLLMSAT 102
L +SAT
Sbjct: 201 MLAVSAT 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,929,722
Number of Sequences: 62578
Number of extensions: 490561
Number of successful extensions: 1165
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1016
Number of HSP's gapped (non-prelim): 106
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)