Query 011428
Match_columns 486
No_of_seqs 498 out of 2855
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:56:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 4.6E-44 1.6E-48 375.0 31.7 265 11-319 156-423 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3E-41 1E-45 349.7 29.9 267 11-319 128-398 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 5.8E-41 2E-45 347.2 29.7 270 9-321 130-400 (410)
4 3eiq_A Eukaryotic initiation f 100.0 9.1E-40 3.1E-44 337.9 25.8 268 11-321 135-404 (414)
5 1s2m_A Putative ATP-dependent 100.0 1E-38 3.5E-43 329.1 32.8 268 10-321 115-382 (400)
6 1xti_A Probable ATP-dependent 100.0 3.3E-38 1.1E-42 323.8 33.5 273 5-319 98-373 (391)
7 3sqw_A ATP-dependent RNA helic 100.0 1.7E-38 5.7E-43 344.5 26.9 270 12-318 127-412 (579)
8 1hv8_A Putative ATP-dependent 100.0 1.2E-37 4.3E-42 315.9 31.0 260 11-319 101-360 (367)
9 3i5x_A ATP-dependent RNA helic 100.0 2.3E-38 7.8E-43 341.9 26.1 270 12-318 178-463 (563)
10 3fht_A ATP-dependent RNA helic 100.0 4.5E-38 1.5E-42 324.7 27.2 264 11-319 123-395 (412)
11 3pey_A ATP-dependent RNA helic 100.0 1.1E-36 3.8E-41 311.9 28.3 259 12-317 103-370 (395)
12 1fuu_A Yeast initiation factor 100.0 8.2E-39 2.8E-43 328.3 11.7 265 11-319 116-381 (394)
13 3fmp_B ATP-dependent RNA helic 100.0 4.2E-39 1.4E-43 341.0 7.9 262 11-317 190-460 (479)
14 2z0m_A 337AA long hypothetical 100.0 4.5E-36 1.5E-40 301.2 24.4 253 10-316 82-334 (337)
15 3oiy_A Reverse gyrase helicase 100.0 1.4E-36 4.7E-41 315.6 20.1 246 11-317 90-376 (414)
16 2v1x_A ATP-dependent DNA helic 100.0 2.6E-35 8.9E-40 319.4 25.8 254 12-310 108-380 (591)
17 3fho_A ATP-dependent RNA helic 100.0 3E-35 1E-39 314.2 16.2 244 33-319 234-486 (508)
18 1oyw_A RECQ helicase, ATP-depe 100.0 1.5E-33 5.2E-38 301.8 27.3 253 11-312 88-351 (523)
19 4ddu_A Reverse gyrase; topoiso 100.0 2.2E-34 7.5E-39 330.9 16.9 249 10-317 146-503 (1104)
20 1tf5_A Preprotein translocase 100.0 1.7E-33 5.9E-38 308.1 19.3 260 10-306 150-547 (844)
21 2fsf_A Preprotein translocase 100.0 7.9E-32 2.7E-36 294.3 23.4 260 10-306 141-585 (853)
22 4a2p_A RIG-I, retinoic acid in 100.0 5.8E-32 2E-36 290.0 21.4 254 12-306 83-510 (556)
23 3l9o_A ATP-dependent RNA helic 100.0 8.9E-32 3E-36 309.4 23.7 240 14-305 253-598 (1108)
24 3tbk_A RIG-I helicase domain; 100.0 9.4E-32 3.2E-36 287.8 20.7 263 11-312 79-515 (555)
25 1gku_B Reverse gyrase, TOP-RG; 100.0 1.4E-32 4.7E-37 315.7 12.8 244 14-318 133-468 (1054)
26 1nkt_A Preprotein translocase 100.0 3.5E-31 1.2E-35 289.6 21.6 260 10-306 178-619 (922)
27 2ykg_A Probable ATP-dependent 100.0 9.4E-32 3.2E-36 297.1 14.6 263 11-312 88-524 (696)
28 1wp9_A ATP-dependent RNA helic 100.0 5.8E-30 2E-34 267.6 26.1 256 12-306 80-477 (494)
29 2xgj_A ATP-dependent RNA helic 100.0 4E-29 1.4E-33 285.0 30.0 239 14-304 155-499 (1010)
30 4a2q_A RIG-I, retinoic acid in 100.0 9.2E-30 3.1E-34 285.7 22.4 256 12-306 324-751 (797)
31 4a4z_A Antiviral helicase SKI2 100.0 7.7E-29 2.6E-33 282.6 25.1 244 12-301 108-489 (997)
32 4gl2_A Interferon-induced heli 100.0 1.9E-30 6.5E-35 286.8 10.3 106 164-305 400-519 (699)
33 4a2w_A RIG-I, retinoic acid in 100.0 4.8E-29 1.6E-33 283.7 21.9 259 11-307 323-752 (936)
34 2p6n_A ATP-dependent RNA helic 100.0 4.3E-29 1.5E-33 232.8 17.3 168 112-319 9-177 (191)
35 2hjv_A ATP-dependent RNA helic 100.0 1.5E-28 5.1E-33 223.0 20.2 153 133-319 5-157 (163)
36 2zj8_A DNA helicase, putative 100.0 8.8E-29 3E-33 274.8 21.9 240 12-305 95-388 (720)
37 2va8_A SSO2462, SKI2-type heli 100.0 1E-28 3.5E-33 274.0 22.1 239 12-305 102-409 (715)
38 2p6r_A Afuhel308 helicase; pro 100.0 7.9E-29 2.7E-33 274.4 20.1 241 11-305 94-389 (702)
39 2rb4_A ATP-dependent RNA helic 100.0 2.1E-28 7.1E-33 224.6 18.0 153 134-320 4-163 (175)
40 1t5i_A C_terminal domain of A 100.0 3.6E-28 1.2E-32 222.6 19.1 152 135-320 3-155 (172)
41 1fuk_A Eukaryotic initiation f 100.0 7.5E-28 2.6E-32 218.8 18.6 152 136-321 2-154 (165)
42 2jgn_A DBX, DDX3, ATP-dependen 100.0 5.4E-28 1.9E-32 224.2 17.9 155 132-319 14-168 (185)
43 3o8b_A HCV NS3 protease/helica 100.0 1E-28 3.5E-33 267.7 13.3 214 12-308 282-518 (666)
44 2whx_A Serine protease/ntpase/ 100.0 1.4E-28 4.9E-33 267.5 13.3 195 59-316 274-493 (618)
45 2eyq_A TRCF, transcription-rep 100.0 2.7E-27 9.3E-32 273.5 24.7 238 11-305 679-923 (1151)
46 3eaq_A Heat resistant RNA depe 99.9 1.2E-26 4.1E-31 219.7 21.8 150 137-320 5-154 (212)
47 1yks_A Genome polyprotein [con 99.9 3.3E-29 1.1E-33 262.7 4.3 216 38-316 71-314 (440)
48 2xau_A PRE-mRNA-splicing facto 99.9 5.1E-28 1.8E-32 269.4 13.2 223 33-306 184-445 (773)
49 1gm5_A RECG; helicase, replica 99.9 7.5E-28 2.6E-32 267.1 14.4 239 11-306 444-699 (780)
50 4f92_B U5 small nuclear ribonu 99.9 1.4E-26 4.8E-31 275.2 25.0 261 4-310 993-1314(1724)
51 2jlq_A Serine protease subunit 99.9 1.6E-27 5.4E-32 250.8 12.7 203 34-304 87-311 (451)
52 3i32_A Heat resistant RNA depe 99.9 3.5E-26 1.2E-30 227.5 20.8 151 137-321 2-152 (300)
53 2oca_A DAR protein, ATP-depend 99.9 3.7E-27 1.3E-31 251.2 11.4 243 12-302 185-453 (510)
54 2wv9_A Flavivirin protease NS2 99.9 1.2E-27 4.2E-32 262.1 6.4 195 59-316 329-548 (673)
55 2d7d_A Uvrabc system protein B 99.9 2.9E-26 1E-30 251.4 16.0 218 40-315 320-567 (661)
56 2fwr_A DNA repair protein RAD2 99.9 4.8E-27 1.6E-31 247.9 8.6 234 11-304 156-454 (472)
57 4f92_B U5 small nuclear ribonu 99.9 2.4E-26 8.3E-31 273.1 14.7 255 11-311 161-480 (1724)
58 2z83_A Helicase/nucleoside tri 99.9 4.9E-27 1.7E-31 247.6 7.1 180 58-304 108-313 (459)
59 2yjt_D ATP-dependent RNA helic 99.9 9.2E-28 3.1E-32 219.3 0.0 150 136-319 2-152 (170)
60 1c4o_A DNA nucleotide excision 99.9 2.3E-25 7.8E-30 244.5 16.7 219 40-316 314-562 (664)
61 3rc3_A ATP-dependent RNA helic 99.9 1.5E-24 5.2E-29 237.2 22.1 225 12-310 203-450 (677)
62 3h1t_A Type I site-specific re 99.9 7.4E-25 2.5E-29 237.8 17.6 225 33-293 273-545 (590)
63 2v6i_A RNA helicase; membrane, 99.9 5.1E-25 1.8E-29 230.3 15.4 201 35-303 71-290 (431)
64 3dmq_A RNA polymerase-associat 99.9 1.5E-23 5E-28 239.2 18.9 136 147-316 487-625 (968)
65 3jux_A Protein translocase sub 99.9 4.6E-22 1.6E-26 213.7 23.9 169 95-306 411-589 (822)
66 1z63_A Helicase of the SNF2/RA 99.9 1.7E-21 5.7E-26 207.0 22.3 122 150-304 326-453 (500)
67 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 1.9E-20 6.6E-25 212.9 18.6 244 20-304 360-709 (1038)
68 1z3i_X Similar to RAD54-like; 99.8 1.2E-18 3.9E-23 191.0 27.4 122 150-304 400-528 (644)
69 3mwy_W Chromo domain-containin 99.8 8.8E-19 3E-23 196.5 21.8 122 150-304 557-684 (800)
70 1z5z_A Helicase of the SNF2/RA 99.7 1.2E-17 4E-22 163.7 14.1 127 145-304 92-224 (271)
71 3fe2_A Probable ATP-dependent 99.7 7.8E-17 2.7E-21 154.8 11.2 111 11-125 129-239 (242)
72 3iuy_A Probable ATP-dependent 99.7 9.7E-17 3.3E-21 152.5 10.2 108 12-123 121-228 (228)
73 1wrb_A DJVLGB; RNA helicase, D 99.7 2.7E-16 9.2E-21 151.9 11.9 122 11-141 127-252 (253)
74 1vec_A ATP-dependent RNA helic 99.6 1.1E-15 3.7E-20 142.6 13.4 106 12-121 100-205 (206)
75 2oxc_A Probable ATP-dependent 99.6 1E-15 3.6E-20 145.8 11.0 115 5-124 114-229 (230)
76 3ber_A Probable ATP-dependent 99.6 1.3E-15 4.6E-20 147.1 11.8 111 11-124 138-248 (249)
77 2ipc_A Preprotein translocase 99.6 4.1E-13 1.4E-17 147.2 32.0 65 9-75 145-215 (997)
78 1q0u_A Bstdead; DEAD protein, 99.6 4E-16 1.4E-20 147.3 7.3 110 12-125 104-213 (219)
79 2gxq_A Heat resistant RNA depe 99.6 1.4E-15 4.9E-20 141.7 10.4 108 12-123 98-205 (207)
80 3bor_A Human initiation factor 99.6 1.9E-15 6.5E-20 144.7 11.1 110 11-124 125-235 (237)
81 3ly5_A ATP-dependent RNA helic 99.6 2.2E-15 7.4E-20 146.8 11.4 107 11-120 153-259 (262)
82 2pl3_A Probable ATP-dependent 99.6 4.8E-15 1.6E-19 141.5 12.0 111 11-125 124-234 (236)
83 3fmo_B ATP-dependent RNA helic 99.6 1.5E-15 5E-20 151.0 7.9 114 6-125 185-299 (300)
84 1qde_A EIF4A, translation init 99.6 5.7E-15 1.9E-19 139.6 10.8 110 11-125 109-218 (224)
85 1t6n_A Probable ATP-dependent 99.6 4.8E-15 1.7E-19 139.8 9.8 107 12-122 111-219 (220)
86 3dkp_A Probable ATP-dependent 99.4 5.1E-14 1.7E-18 135.1 5.9 113 11-125 125-242 (245)
87 3llm_A ATP-dependent RNA helic 99.1 1.4E-10 4.9E-15 110.6 6.3 78 33-120 154-233 (235)
88 2vl7_A XPD; helicase, unknown 99.0 1.6E-09 5.3E-14 116.1 11.9 75 163-276 383-463 (540)
89 3b6e_A Interferon-induced heli 98.8 1.3E-09 4.6E-14 101.3 2.6 91 12-102 110-216 (216)
90 3crv_A XPD/RAD3 related DNA he 98.6 5E-06 1.7E-10 89.0 22.4 77 163-276 392-473 (551)
91 1rif_A DAR protein, DNA helica 98.4 6.7E-08 2.3E-12 94.4 0.8 88 12-113 185-272 (282)
92 2fz4_A DNA repair protein RAD2 98.1 5.1E-06 1.7E-10 79.1 7.1 74 12-106 157-231 (237)
93 4a15_A XPD helicase, ATP-depen 97.9 0.00015 5.3E-09 78.5 15.4 105 163-302 447-582 (620)
94 3hgt_A HDA1 complex subunit 3; 95.9 0.062 2.1E-06 53.0 12.2 123 146-306 106-239 (328)
95 1gm5_A RECG; helicase, replica 95.6 0.041 1.4E-06 61.0 10.6 71 153-223 406-480 (780)
96 3oiy_A Reverse gyrase helicase 94.3 0.19 6.5E-06 50.7 10.4 62 162-223 62-126 (414)
97 2eyq_A TRCF, transcription-rep 92.0 0.48 1.7E-05 54.8 10.3 68 156-223 644-715 (1151)
98 1oyw_A RECQ helicase, ATP-depe 90.9 0.78 2.7E-05 48.2 9.7 60 164-223 65-124 (523)
99 4ddu_A Reverse gyrase; topoiso 90.8 0.57 2E-05 53.9 9.2 62 162-223 119-183 (1104)
100 2v1x_A ATP-dependent DNA helic 90.6 0.83 2.8E-05 48.8 9.7 60 164-223 84-145 (591)
101 1t6n_A Probable ATP-dependent 86.6 2 6.7E-05 38.9 8.2 56 165-223 83-143 (220)
102 3ber_A Probable ATP-dependent 83.1 5.2 0.00018 37.1 9.5 56 164-223 111-170 (249)
103 2oxc_A Probable ATP-dependent 81.1 3.6 0.00012 37.5 7.4 55 164-223 92-151 (230)
104 1xti_A Probable ATP-dependent 80.1 4.2 0.00015 39.9 8.1 57 164-223 76-137 (391)
105 3fe2_A Probable ATP-dependent 78.5 5.5 0.00019 36.6 7.8 56 164-223 102-161 (242)
106 2pl3_A Probable ATP-dependent 78.3 7.9 0.00027 35.2 8.8 55 164-223 97-155 (236)
107 1vec_A ATP-dependent RNA helic 76.2 6.5 0.00022 34.8 7.4 56 164-223 71-131 (206)
108 1w36_D RECD, exodeoxyribonucle 75.7 2.2 7.4E-05 45.7 4.6 37 62-102 262-298 (608)
109 1gku_B Reverse gyrase, TOP-RG; 74.0 5.6 0.00019 45.5 7.7 59 163-223 98-164 (1054)
110 2gxq_A Heat resistant RNA depe 73.5 15 0.0005 32.4 9.1 56 164-223 72-129 (207)
111 3iuy_A Probable ATP-dependent 71.4 10 0.00035 34.2 7.6 57 163-223 93-152 (228)
112 1qde_A EIF4A, translation init 71.4 4 0.00014 36.8 4.8 55 164-223 82-140 (224)
113 3tbk_A RIG-I helicase domain; 71.4 6.2 0.00021 40.7 6.8 56 164-223 52-111 (555)
114 4a2p_A RIG-I, retinoic acid in 71.2 7.7 0.00026 40.1 7.5 56 164-223 55-114 (556)
115 4a2q_A RIG-I, retinoic acid in 70.6 8.8 0.0003 42.3 8.1 56 164-223 296-355 (797)
116 3g5j_A Putative ATP/GTP bindin 69.4 6.3 0.00022 32.3 5.2 36 165-200 90-126 (134)
117 3bor_A Human initiation factor 68.2 8.5 0.00029 35.2 6.3 57 164-223 98-158 (237)
118 1wrb_A DJVLGB; RNA helicase, D 67.6 19 0.00066 33.0 8.8 55 165-223 101-159 (253)
119 1wp9_A ATP-dependent RNA helic 67.4 15 0.00051 36.6 8.5 56 163-223 51-110 (494)
120 3fmo_B ATP-dependent RNA helic 66.1 5.4 0.00019 38.3 4.7 52 165-223 163-219 (300)
121 2fsf_A Preprotein translocase 65.5 17 0.00058 40.2 8.8 67 151-223 102-172 (853)
122 1q0u_A Bstdead; DEAD protein, 65.0 5.1 0.00017 36.1 4.0 56 164-223 72-135 (219)
123 3gk5_A Uncharacterized rhodane 64.6 6 0.00021 31.6 4.0 36 164-199 55-90 (108)
124 1tf5_A Preprotein translocase 63.4 23 0.00078 39.2 9.4 66 151-222 111-180 (844)
125 1fuu_A Yeast initiation factor 63.4 15 0.0005 35.9 7.4 55 164-223 89-147 (394)
126 1g5t_A COB(I)alamin adenosyltr 63.3 2.8 9.6E-05 38.0 1.8 53 61-113 119-173 (196)
127 1wv9_A Rhodanese homolog TT165 62.3 6.3 0.00022 30.5 3.6 35 165-199 54-88 (94)
128 3dkp_A Probable ATP-dependent 61.8 5.3 0.00018 36.7 3.5 57 164-223 98-158 (245)
129 2l82_A Designed protein OR32; 60.3 31 0.0011 27.7 7.2 53 167-219 5-57 (162)
130 2z0m_A 337AA long hypothetical 59.1 28 0.00094 32.9 8.3 55 164-223 56-114 (337)
131 2fz4_A DNA repair protein RAD2 59.0 19 0.00065 33.0 6.9 61 148-223 119-180 (237)
132 2r2a_A Uncharacterized protein 58.7 5.7 0.0002 35.9 3.1 40 63-102 88-132 (199)
133 3foj_A Uncharacterized protein 58.5 6.4 0.00022 30.9 3.0 36 164-199 56-91 (100)
134 3eiq_A Eukaryotic initiation f 58.4 25 0.00087 34.4 8.2 58 163-223 107-168 (414)
135 3eme_A Rhodanese-like domain p 58.4 5.5 0.00019 31.4 2.6 36 164-199 56-91 (103)
136 2db3_A ATP-dependent RNA helic 58.3 22 0.00075 35.8 7.8 56 164-223 129-188 (434)
137 2fwr_A DNA repair protein RAD2 57.7 16 0.00055 37.0 6.7 47 164-223 133-180 (472)
138 4a2w_A RIG-I, retinoic acid in 57.3 13 0.00044 41.8 6.3 56 164-223 296-355 (936)
139 3jux_A Protein translocase sub 55.9 6.3 0.00022 43.1 3.2 42 34-75 214-258 (822)
140 1s2m_A Putative ATP-dependent 55.8 24 0.00082 34.5 7.5 56 164-223 89-148 (400)
141 3hix_A ALR3790 protein; rhodan 55.2 16 0.00055 28.8 5.0 36 164-199 52-88 (106)
142 3b6e_A Interferon-induced heli 54.9 16 0.00054 32.2 5.5 56 164-223 82-141 (216)
143 1nkt_A Preprotein translocase 54.6 41 0.0014 37.5 9.4 56 162-223 150-209 (922)
144 2ipc_A Preprotein translocase 53.9 38 0.0013 37.9 8.9 66 151-222 107-176 (997)
145 2p6n_A ATP-dependent RNA helic 53.8 28 0.00094 30.8 6.8 47 12-68 78-128 (191)
146 2j0s_A ATP-dependent RNA helic 53.5 30 0.001 34.0 7.7 57 163-223 104-164 (410)
147 2i4i_A ATP-dependent RNA helic 53.4 28 0.00097 34.1 7.6 55 165-223 102-160 (417)
148 3ly5_A ATP-dependent RNA helic 52.9 58 0.002 30.1 9.3 56 164-223 126-185 (262)
149 2ykg_A Probable ATP-dependent 52.6 21 0.00071 38.2 6.8 55 165-223 62-120 (696)
150 1hv8_A Putative ATP-dependent 52.5 55 0.0019 31.1 9.4 55 164-223 74-132 (367)
151 3flh_A Uncharacterized protein 51.9 10 0.00034 31.1 3.3 36 164-199 71-108 (124)
152 4a15_A XPD helicase, ATP-depen 49.8 4.9 0.00017 43.0 1.2 49 28-76 169-218 (620)
153 1gmx_A GLPE protein; transfera 49.6 17 0.00058 28.7 4.2 37 164-200 58-95 (108)
154 3p45_A Caspase-6; protease, hu 48.8 41 0.0014 29.8 6.9 50 163-213 43-106 (179)
155 2hjv_A ATP-dependent RNA helic 48.7 84 0.0029 26.4 9.0 49 12-70 59-111 (163)
156 2jtq_A Phage shock protein E; 47.5 38 0.0013 25.2 5.8 35 164-199 41-76 (85)
157 1sxj_E Activator 1 40 kDa subu 47.0 9.3 0.00032 37.1 2.7 41 61-102 133-173 (354)
158 2fsx_A RV0390, COG0607: rhodan 46.3 16 0.00054 30.9 3.7 36 164-199 80-116 (148)
159 3h11_B Caspase-8; cell death, 46.2 36 0.0012 32.2 6.6 49 163-212 16-85 (271)
160 2hhg_A Hypothetical protein RP 46.1 13 0.00044 30.9 3.1 36 164-199 86-122 (139)
161 3iwh_A Rhodanese-like domain p 45.5 12 0.0004 29.8 2.6 35 164-198 56-90 (103)
162 3eaq_A Heat resistant RNA depe 45.3 22 0.00074 32.0 4.7 47 12-68 55-105 (212)
163 3nhv_A BH2092 protein; alpha-b 44.8 12 0.00041 31.7 2.7 36 164-199 72-109 (144)
164 4gl2_A Interferon-induced heli 44.5 7.3 0.00025 41.9 1.5 55 165-223 57-115 (699)
165 3ilm_A ALR3790 protein; rhodan 44.1 19 0.00063 30.3 3.8 36 164-199 56-92 (141)
166 2dko_A Caspase-3; low barrier 44.1 33 0.0011 29.2 5.4 49 164-213 16-78 (146)
167 2kjq_A DNAA-related protein; s 43.8 5.6 0.00019 34.0 0.4 54 60-114 81-139 (149)
168 3hjh_A Transcription-repair-co 43.7 1E+02 0.0034 31.7 10.0 84 138-223 15-111 (483)
169 2oca_A DAR protein, ATP-depend 43.4 39 0.0013 34.5 6.9 53 164-223 157-213 (510)
170 1qtn_A Caspase-8; apoptosis, d 43.4 62 0.0021 28.1 7.2 50 163-213 22-92 (164)
171 1qxn_A SUD, sulfide dehydrogen 43.2 14 0.00047 30.9 2.8 36 164-199 82-118 (137)
172 2b8t_A Thymidine kinase; deoxy 43.1 39 0.0013 30.9 6.2 56 37-101 69-124 (223)
173 3h11_A CAsp8 and FADD-like apo 42.8 18 0.0006 34.5 3.8 49 163-212 42-90 (272)
174 1tq1_A AT5G66040, senescence-a 42.8 14 0.00048 30.4 2.8 36 164-199 82-118 (129)
175 2p65_A Hypothetical protein PF 42.4 7.7 0.00026 33.2 1.1 13 63-75 116-128 (187)
176 3zyw_A Glutaredoxin-3; metal b 42.4 93 0.0032 24.7 7.7 60 161-220 12-77 (111)
177 2orw_A Thymidine kinase; TMTK, 42.3 40 0.0014 29.5 5.9 37 62-102 76-112 (184)
178 2gno_A DNA polymerase III, gam 41.6 30 0.001 33.2 5.3 84 13-99 18-118 (305)
179 2k0z_A Uncharacterized protein 41.5 23 0.00079 28.1 3.8 36 164-199 56-91 (110)
180 1pyo_A Caspase-2; apoptosis, c 41.3 46 0.0016 29.0 6.0 57 164-221 33-107 (167)
181 2rb4_A ATP-dependent RNA helic 40.4 24 0.00081 30.4 4.1 47 12-68 58-108 (175)
182 1fuk_A Eukaryotic initiation f 40.1 33 0.0011 29.2 4.9 48 12-69 54-105 (165)
183 1c4o_A DNA nucleotide excision 40.1 1.7E+02 0.0057 31.2 11.5 82 140-223 31-139 (664)
184 3i5x_A ATP-dependent RNA helic 39.7 25 0.00086 36.5 4.8 56 165-223 147-210 (563)
185 1a5t_A Delta prime, HOLB; zinc 39.2 30 0.001 33.4 5.0 17 60-76 106-122 (334)
186 3ipz_A Monothiol glutaredoxin- 39.2 1.1E+02 0.0037 24.0 7.6 59 162-220 15-79 (109)
187 3d1p_A Putative thiosulfate su 39.1 20 0.00068 29.7 3.2 36 164-199 91-127 (139)
188 2yan_A Glutaredoxin-3; oxidore 38.9 1E+02 0.0035 23.8 7.4 56 164-219 16-77 (105)
189 3sqw_A ATP-dependent RNA helic 38.3 25 0.00086 36.8 4.5 56 165-223 96-159 (579)
190 2h54_A Caspase-1; allosteric s 37.4 77 0.0026 27.9 6.9 48 164-212 43-101 (178)
191 3l9o_A ATP-dependent RNA helic 37.4 62 0.0021 37.0 7.9 59 153-222 216-274 (1108)
192 3i32_A Heat resistant RNA depe 37.1 29 0.001 33.2 4.4 47 12-68 52-102 (300)
193 3e4c_A Caspase-1; zymogen, inf 37.1 72 0.0025 30.6 7.2 47 165-212 61-118 (302)
194 3sxu_A DNA polymerase III subu 35.5 79 0.0027 26.9 6.5 65 150-223 24-89 (150)
195 2nn3_C Caspase-1; cysteine pro 35.2 83 0.0028 30.3 7.3 49 164-213 60-121 (310)
196 1d2n_A N-ethylmaleimide-sensit 35.1 33 0.0011 31.7 4.4 46 61-106 123-178 (272)
197 2ql9_A Caspase-7; cysteine pro 34.8 55 0.0019 28.8 5.4 49 164-213 44-106 (173)
198 1l8q_A Chromosomal replication 34.8 22 0.00074 34.1 3.1 42 62-104 98-141 (324)
199 2chg_A Replication factor C sm 34.7 22 0.00074 31.1 2.9 39 61-100 101-139 (226)
200 3e1s_A Exodeoxyribonuclease V, 34.7 30 0.001 36.5 4.4 37 61-101 278-314 (574)
201 4a4z_A Antiviral helicase SKI2 34.5 53 0.0018 37.1 6.6 51 162-223 80-132 (997)
202 3kta_B Chromosome segregation 34.3 21 0.00073 31.3 2.7 40 62-101 86-125 (173)
203 3u61_B DNA polymerase accessor 33.7 16 0.00056 34.9 2.0 40 61-100 104-143 (324)
204 3od5_A Caspase-6; caspase doma 32.7 98 0.0033 29.2 7.3 50 163-213 20-83 (278)
205 1vee_A Proline-rich protein fa 32.5 39 0.0013 27.8 3.9 36 164-199 74-110 (134)
206 3syl_A Protein CBBX; photosynt 32.2 27 0.00092 32.9 3.3 13 64-76 132-144 (309)
207 3gx8_A Monothiol glutaredoxin- 31.1 1.9E+02 0.0065 23.2 8.0 58 163-220 14-80 (121)
208 1t5i_A C_terminal domain of A 31.0 30 0.001 29.8 3.1 47 12-68 55-105 (172)
209 2jgn_A DBX, DDX3, ATP-dependen 31.0 28 0.00095 30.5 2.9 47 12-68 70-120 (185)
210 1njg_A DNA polymerase III subu 30.6 27 0.00094 30.8 2.9 39 61-100 125-163 (250)
211 1rif_A DAR protein, DNA helica 30.6 93 0.0032 28.8 6.8 53 164-223 157-213 (282)
212 2i3b_A HCR-ntpase, human cance 30.3 38 0.0013 30.0 3.7 42 60-104 103-146 (189)
213 1wik_A Thioredoxin-like protei 29.5 1.6E+02 0.0056 22.8 7.2 56 164-219 14-75 (109)
214 2wci_A Glutaredoxin-4; redox-a 29.0 1.2E+02 0.004 25.2 6.4 57 164-220 34-96 (135)
215 2z4s_A Chromosomal replication 29.0 39 0.0013 34.2 4.0 40 62-101 194-235 (440)
216 1jbk_A CLPB protein; beta barr 28.8 62 0.0021 27.1 4.8 26 63-88 116-148 (195)
217 2d7d_A Uvrabc system protein B 28.4 2.4E+02 0.0081 30.1 10.2 82 140-223 35-143 (661)
218 2p6r_A Afuhel308 helicase; pro 28.2 49 0.0017 35.5 4.9 62 155-223 59-123 (702)
219 3bos_A Putative DNA replicatio 28.0 25 0.00086 31.3 2.1 42 61-102 103-146 (242)
220 3ec2_A DNA replication protein 28.0 22 0.00076 30.6 1.7 46 61-106 99-146 (180)
221 2fp3_A Caspase NC; apoptosis, 27.9 1.1E+02 0.0036 29.6 6.7 49 163-212 60-120 (316)
222 3tg1_B Dual specificity protei 27.5 30 0.001 29.4 2.4 35 164-198 93-136 (158)
223 2wem_A Glutaredoxin-related pr 26.3 2E+02 0.0069 23.0 7.2 58 164-221 19-83 (118)
224 1m72_A Caspase-1; caspase, cys 26.3 1.5E+02 0.0052 27.7 7.4 49 164-213 32-93 (272)
225 2zj8_A DNA helicase, putative 26.1 48 0.0017 35.7 4.3 53 164-223 68-123 (720)
226 4ag6_A VIRB4 ATPase, type IV s 25.9 44 0.0015 32.9 3.7 40 62-102 262-304 (392)
227 2yjt_D ATP-dependent RNA helic 31.5 15 0.0005 31.7 0.0 47 12-68 54-104 (170)
228 3sir_A Caspase; hydrolase; 2.6 25.5 87 0.003 29.2 5.4 49 164-213 20-81 (259)
229 2v1u_A Cell division control p 25.2 36 0.0012 32.9 2.8 28 63-90 131-159 (387)
230 3h4m_A Proteasome-activating n 25.2 31 0.0011 32.0 2.3 13 63-75 111-123 (285)
231 3upu_A ATP-dependent DNA helic 25.1 75 0.0026 32.1 5.3 38 59-100 125-162 (459)
232 1iqp_A RFCS; clamp loader, ext 25.1 36 0.0012 32.1 2.7 39 61-100 109-147 (327)
233 3te6_A Regulatory protein SIR3 24.9 43 0.0015 32.5 3.2 41 61-104 131-174 (318)
234 1sxj_D Activator 1 41 kDa subu 24.6 42 0.0014 32.1 3.2 39 61-100 132-170 (353)
235 3fht_A ATP-dependent RNA helic 24.1 70 0.0024 31.0 4.8 53 164-223 95-152 (412)
236 3fmp_B ATP-dependent RNA helic 23.8 88 0.003 31.5 5.6 51 166-223 164-219 (479)
237 1nw9_B Caspase 9, apoptosis-re 23.7 1.4E+02 0.0049 27.9 6.7 50 163-213 20-83 (277)
238 2j32_A Caspase-3; Pro-caspase3 23.6 1.2E+02 0.004 28.2 5.9 49 164-213 16-78 (250)
239 1sxj_B Activator 1 37 kDa subu 23.6 30 0.001 32.6 1.8 38 62-100 107-144 (323)
240 1sxj_C Activator 1 40 kDa subu 23.5 47 0.0016 32.0 3.2 39 61-100 109-147 (340)
241 1jr3_D DNA polymerase III, del 23.2 56 0.0019 31.4 3.7 44 59-103 73-117 (343)
242 3pey_A ATP-dependent RNA helic 23.0 2.8E+02 0.0095 26.2 8.9 52 12-73 267-322 (395)
243 1uar_A Rhodanese; sulfurtransf 22.1 92 0.0031 29.0 5.0 36 164-199 233-270 (285)
244 2fna_A Conserved hypothetical 22.0 88 0.003 29.5 4.9 36 64-100 139-177 (357)
245 1urh_A 3-mercaptopyruvate sulf 22.0 67 0.0023 29.9 3.9 37 164-200 230-267 (280)
246 3mwy_W Chromo domain-containin 22.0 1.3E+02 0.0046 32.7 6.9 66 157-223 279-354 (800)
247 1u6t_A SH3 domain-binding glut 21.7 99 0.0034 25.4 4.4 39 172-210 14-52 (121)
248 4ehd_A Caspase-3; caspase, apo 21.4 1.6E+02 0.0054 27.8 6.4 49 164-213 44-106 (277)
249 2j48_A Two-component sensor ki 21.3 2E+02 0.0068 21.3 6.2 27 166-192 3-29 (119)
250 2xw6_A MGS, methylglyoxal synt 20.9 99 0.0034 25.9 4.3 75 142-223 7-83 (134)
251 2va8_A SSO2462, SKI2-type heli 20.8 1E+02 0.0034 33.1 5.5 53 164-223 75-130 (715)
252 1jr3_A DNA polymerase III subu 20.7 53 0.0018 31.6 3.0 39 61-100 118-156 (373)
253 3eie_A Vacuolar protein sortin 20.6 96 0.0033 29.5 4.8 42 63-104 111-163 (322)
254 2qby_B CDC6 homolog 3, cell di 20.6 35 0.0012 33.1 1.7 35 65-100 136-171 (384)
255 4f67_A UPF0176 protein LPG2838 20.5 57 0.0019 30.7 3.0 38 163-200 180-218 (265)
256 2eg4_A Probable thiosulfate su 20.4 66 0.0022 29.0 3.4 36 164-199 184-219 (230)
257 1e0c_A Rhodanese, sulfurtransf 20.4 80 0.0027 29.1 4.1 36 164-199 223-259 (271)
258 3co5_A Putative two-component 20.3 73 0.0025 26.3 3.4 39 64-103 77-116 (143)
259 3hjh_A Transcription-repair-co 20.3 29 0.00099 35.8 1.0 41 152-194 372-412 (483)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.6e-44 Score=375.05 Aligned_cols=265 Identities=26% Similarity=0.389 Sum_probs=241.4
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.++++..++||.+...|...+..+++|+|+||++|++++..+. ..++++++|||||||+|+++||..++..|+..+
T Consensus 156 ~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~----~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~ 231 (434)
T 2db3_A 156 SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF----ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV 231 (434)
T ss_dssp SSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS----CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCT
T ss_pred CCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC----cccccCCeEEEccHhhhhccCcHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999999765 678999999999999999999999999999885
Q ss_pred --CCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEE
Q 011428 91 --PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKAL 168 (486)
Q Consensus 91 --p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~I 168 (486)
+...|+++||||+|.++..+...++.+|..+.+.. ......++.|.+..+...+|...+..++.... .++|
T Consensus 232 ~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~-----~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~--~~~l 304 (434)
T 2db3_A 232 TMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGI-----VGGACSDVKQTIYEVNKYAKRSKLIEILSEQA--DGTI 304 (434)
T ss_dssp TSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESS-----TTCCCTTEEEEEEECCGGGHHHHHHHHHHHCC--TTEE
T ss_pred CCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecc-----ccccccccceEEEEeCcHHHHHHHHHHHHhCC--CCEE
Confidence 57899999999999999999999999999988765 33455678999999999999999999887643 4599
Q ss_pred EEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCC
Q 011428 169 IFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248 (486)
Q Consensus 169 IFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (486)
|||+++..|..++.+|...|+.+..+||++++.+|..+++.|++|..+||||||+
T Consensus 305 VF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v------------------------- 359 (434)
T 2db3_A 305 VFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV------------------------- 359 (434)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG-------------------------
T ss_pred EEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh-------------------------
Confidence 9999999999999999999999999999999999999999999999999999998
Q ss_pred CcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcc-hhhHHHHHHHHhccc
Q 011428 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD-EMKIFEEIKSFVGDD 319 (486)
Q Consensus 249 ~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~-e~~~~~~~~~~l~~~ 319 (486)
++||||+|+|++|||||+|.+..+|+||+|||||+|+.|.|++|+++. +...+..+.+++...
T Consensus 360 --------~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~ 423 (434)
T 2db3_A 360 --------ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGS 423 (434)
T ss_dssp --------GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHT
T ss_pred --------hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHc
Confidence 469999999999999999999999999999999999999999999965 556777777777544
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3e-41 Score=349.67 Aligned_cols=267 Identities=27% Similarity=0.395 Sum_probs=240.3
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHH-
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV- 89 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~- 89 (486)
.++++..++|+.+...+...+..+++|+|+||++|.+++..+. ..++++++|||||||.+++++|...+..++..
T Consensus 128 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~----~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~ 203 (417)
T 2i4i_A 128 SRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK----IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD 203 (417)
T ss_dssp SSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS----BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSS
T ss_pred CCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC----cChhhCcEEEEEChhHhhccCcHHHHHHHHHhc
Confidence 5789999999999998888888899999999999999998765 66889999999999999999999999999884
Q ss_pred -CCC--CccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCe
Q 011428 90 -IPR--GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKK 166 (486)
Q Consensus 90 -lp~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k 166 (486)
++. ..|+++||||++..+..+...++.+|..+.+.. ......++.+.++.+...++...+..+++.....++
T Consensus 204 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 278 (417)
T 2i4i_A 204 TMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR-----VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSL 278 (417)
T ss_dssp SCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC---------CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCE
T ss_pred cCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC-----CCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCe
Confidence 443 689999999999999999999999998887755 344566889999999999999999999987656789
Q ss_pred EEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCC
Q 011428 167 ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKH 246 (486)
Q Consensus 167 ~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~ 246 (486)
+||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|..+|||||+.
T Consensus 279 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~----------------------- 335 (417)
T 2i4i_A 279 TLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV----------------------- 335 (417)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH-----------------------
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh-----------------------
Confidence 999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHHhccc
Q 011428 247 PKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319 (486)
Q Consensus 247 ~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~l~~~ 319 (486)
+++|||+|+|++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+.+.+...
T Consensus 336 ----------~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 398 (417)
T 2i4i_A 336 ----------AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 398 (417)
T ss_dssp ----------HHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred ----------hhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999998888888877543
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.8e-41 Score=347.25 Aligned_cols=270 Identities=24% Similarity=0.430 Sum_probs=243.8
Q ss_pred cCCCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHH
Q 011428 9 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88 (486)
Q Consensus 9 ~~~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~ 88 (486)
...++.+..++|+.+...+...+..+++|+|+||++|.+++..+. ..+.++++|||||||.+++++|...+..++.
T Consensus 130 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~----~~~~~~~~vViDEah~~~~~~~~~~~~~i~~ 205 (410)
T 2j0s_A 130 DYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS----LRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 205 (410)
T ss_dssp TTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS----SCCTTCCEEEEETHHHHTSTTTHHHHHHHHT
T ss_pred ccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC----ccHhheeEEEEccHHHHHhhhhHHHHHHHHH
Confidence 345789999999999988888888899999999999999998765 6678899999999999999999999999999
Q ss_pred HCCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhh-hHHHHHHHHHhhccCCeE
Q 011428 89 VIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKA 167 (486)
Q Consensus 89 ~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~-k~~~l~~llk~~~~~~k~ 167 (486)
.++...|+++||||++.++..+...++.+|..+.+.. .......+.+++..+...+ +...+..++... ..+++
T Consensus 206 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~ 279 (410)
T 2j0s_A 206 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKR-----DELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQA 279 (410)
T ss_dssp TSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCG-----GGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH-TSSEE
T ss_pred hCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecC-----ccccCCCceEEEEEeCcHHhHHHHHHHHHHhc-CCCcE
Confidence 9999999999999999999888888999998887654 4455667888888887555 888888887654 36799
Q ss_pred EEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCC
Q 011428 168 LIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHP 247 (486)
Q Consensus 168 IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (486)
||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|..+|||||+..
T Consensus 280 lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~----------------------- 336 (410)
T 2j0s_A 280 VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW----------------------- 336 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGG-----------------------
T ss_pred EEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChh-----------------------
Confidence 999999999999999999999999999999999999999999999999999999984
Q ss_pred CCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHHhccccc
Q 011428 248 KAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321 (486)
Q Consensus 248 ~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~l~~~~~ 321 (486)
++|||+|++++||+||+|.+...|+||+||+||.|+.|.+++|+++.+...+..+++++.....
T Consensus 337 ----------~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 400 (410)
T 2j0s_A 337 ----------ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID 400 (410)
T ss_dssp ----------SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCE
T ss_pred ----------hCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCce
Confidence 5899999999999999999999999999999999999999999999999999999988865543
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=9.1e-40 Score=337.93 Aligned_cols=268 Identities=27% Similarity=0.432 Sum_probs=226.4
Q ss_pred CCeeEEEEeCCCCHHHHHHHHc-CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHH
Q 011428 11 VQLKVVQLTSSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~-~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~ 89 (486)
.++.+..++|+.+...+...+. ..++|+|+||++|++++..+. ..+..+++|||||||++++++|...+..++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~----~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 210 (414)
T 3eiq_A 135 MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY----LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQK 210 (414)
T ss_dssp SCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS----SCSTTCCEEEECSHHHHHHTTTHHHHHHHHTT
T ss_pred cCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC----cccccCcEEEEECHHHhhccCcHHHHHHHHHh
Confidence 4688888999988887776665 789999999999999998865 66788999999999999999999999999999
Q ss_pred CCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhh-hHHHHHHHHHhhccCCeEE
Q 011428 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKAL 168 (486)
Q Consensus 90 lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~-k~~~l~~llk~~~~~~k~I 168 (486)
++...|+++||||++.++..+...++.+|..+.+.. .......+.++++.+...+ +...+..++... ..+++|
T Consensus 211 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l 284 (414)
T 3eiq_A 211 LNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK-----EELTLEGIRQFYINVEREEWKLDTLCDLYETL-TITQAV 284 (414)
T ss_dssp SCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCC-----CCCCTTSCCEEEEECSSSTTHHHHHHHHHHSS-CCSSCE
T ss_pred CCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecC-----CccCCCCceEEEEEeChHHhHHHHHHHHHHhC-CCCcEE
Confidence 999999999999999999999999999998887655 4555667888888877554 778887877654 467999
Q ss_pred EEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCC
Q 011428 169 IFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248 (486)
Q Consensus 169 IFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (486)
|||++++.+..++..|...++.+..+||+|+..+|..+++.|++|..+|||||+.+
T Consensus 285 vf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~------------------------ 340 (414)
T 3eiq_A 285 IFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL------------------------ 340 (414)
T ss_dssp EECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC------------------------
T ss_pred EEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc------------------------
Confidence 99999999999999999999999999999999999999999999999999999995
Q ss_pred CcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHHhccccc
Q 011428 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321 (486)
Q Consensus 249 ~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~l~~~~~ 321 (486)
++|||+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+++++.....
T Consensus 341 ---------~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (414)
T 3eiq_A 341 ---------ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIE 404 (414)
T ss_dssp ---------C--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCE
T ss_pred ---------ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCcc
Confidence 5899999999999999999999999999999999999999999999999999999988865533
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1e-38 Score=329.12 Aligned_cols=268 Identities=28% Similarity=0.410 Sum_probs=241.9
Q ss_pred CCCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHH
Q 011428 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89 (486)
Q Consensus 10 ~~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~ 89 (486)
..++++..++|+.....+...+...++|+|+||+++.+++..+. ..+.++++|||||||++++.+|...+..++..
T Consensus 115 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~----~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~ 190 (400)
T 1s2m_A 115 HCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV----ADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 190 (400)
T ss_dssp TTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC----SCCTTCCEEEEESHHHHSSHHHHHHHHHHHTT
T ss_pred ccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC----cccccCCEEEEeCchHhhhhchHHHHHHHHHh
Confidence 34789999999999888877788899999999999999998764 56789999999999999998899999999999
Q ss_pred CCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEE
Q 011428 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALI 169 (486)
Q Consensus 90 lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~II 169 (486)
++...|+++||||++..+..+...++.+|..+.+.. .....++.+++..+....+...+..++... ..+++||
T Consensus 191 ~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lV 263 (400)
T 1s2m_A 191 LPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME------ELTLKGITQYYAFVEERQKLHCLNTLFSKL-QINQAII 263 (400)
T ss_dssp SCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS------SCBCTTEEEEEEECCGGGHHHHHHHHHHHS-CCSEEEE
T ss_pred CCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc------ccccCCceeEEEEechhhHHHHHHHHHhhc-CCCcEEE
Confidence 999999999999999999988888898888776543 344567889999999999998888888754 4689999
Q ss_pred EecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCC
Q 011428 170 FTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249 (486)
Q Consensus 170 Fvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (486)
||++++.+..++..|...|+.+..+||+|+..+|..+++.|++|..+|||||+..
T Consensus 264 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~------------------------- 318 (400)
T 1s2m_A 264 FCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLL------------------------- 318 (400)
T ss_dssp ECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCS-------------------------
T ss_pred EEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc-------------------------
Confidence 9999999999999999999999999999999999999999999999999999984
Q ss_pred cccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHHhccccc
Q 011428 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDEN 321 (486)
Q Consensus 250 ~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~l~~~~~ 321 (486)
++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+++.++....
T Consensus 319 --------~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~ 382 (400)
T 1s2m_A 319 --------TRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIA 382 (400)
T ss_dssp --------SSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCE
T ss_pred --------ccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcc
Confidence 5899999999999999999999999999999999999999999999999888888887765433
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.3e-38 Score=323.75 Aligned_cols=273 Identities=22% Similarity=0.380 Sum_probs=238.9
Q ss_pred HHhhcCCCeeEEEEeCCCCHHHHHHHHc-CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCC-CcHHH
Q 011428 5 ELCKGQVQLKVVQLTSSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY-GYEDD 82 (486)
Q Consensus 5 ~~~~~~~~i~v~~l~g~~~~~~q~~~l~-~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~-g~~~~ 82 (486)
.++....++++..++|+.+...+...+. ..++|+|+||+++..++..+. ..+.++++|||||||++.++ +|...
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~----~~~~~~~~vViDEaH~~~~~~~~~~~ 173 (391)
T 1xti_A 98 RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS----LNLKHIKHFILDECDKMLEQLDMRRD 173 (391)
T ss_dssp HHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS----SCCTTCSEEEECSHHHHTSSHHHHHH
T ss_pred HHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC----ccccccCEEEEeCHHHHhhccchHHH
Confidence 3443333789999999999877776665 458999999999999998764 56889999999999999985 78899
Q ss_pred HHHHHHHCCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhc
Q 011428 83 LKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLEL 162 (486)
Q Consensus 83 l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~ 162 (486)
+..++..++...|+++||||+++.+..+...++.+|..+.+... .......+.+++..+...++...+..++...
T Consensus 174 ~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~- 248 (391)
T 1xti_A 174 VQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE----TKLTLHGLQQYYVKLKDNEKNRKLFDLLDVL- 248 (391)
T ss_dssp HHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCC----CCCCCTTCEEEEEECCGGGHHHHHHHHHHHS-
T ss_pred HHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCc----cccCcccceEEEEEcCchhHHHHHHHHHHhc-
Confidence 99999999999999999999999999999999999988876541 1234467889999999999999999888764
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCccccc
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~ 242 (486)
..+++||||++++.+..++..|...|+.+..+||+|+..+|..+++.|++|..+|||||+..
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~------------------ 310 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF------------------ 310 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCC------------------
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChh------------------
Confidence 57899999999999999999999999999999999999999999999999999999999984
Q ss_pred ccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchh-hHHHHHHHHhccc
Q 011428 243 SKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM-KIFEEIKSFVGDD 319 (486)
Q Consensus 243 ~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~-~~~~~~~~~l~~~ 319 (486)
++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.+++|+++.+. ..+..+++.+...
T Consensus 311 ---------------~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (391)
T 1xti_A 311 ---------------GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVN 373 (391)
T ss_dssp ---------------SSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCC
T ss_pred ---------------hcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999999999999999999998754 5667777766543
No 7
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.7e-38 Score=344.54 Aligned_cols=270 Identities=29% Similarity=0.400 Sum_probs=225.8
Q ss_pred CeeEEEEeCCCCHHHHHHHHc-CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 12 QLKVVQLTSSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~-~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.+.+..+.|+.....+...+. .+++|||+||++|++++.... ...++.+++|||||||+++++||..++..|+..+
T Consensus 127 ~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~---~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l 203 (579)
T 3sqw_A 127 KYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS---NKFFRFVDYKVLDEADRLLEIGFRDDLETISGIL 203 (579)
T ss_dssp TSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH---HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHH
T ss_pred ceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc---ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHh
Confidence 467888999999887776664 589999999999999997641 2467889999999999999999999999998876
Q ss_pred C-------CCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchh-hhH----HHHHHHH
Q 011428 91 P-------RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER-DKL----LYILTLL 158 (486)
Q Consensus 91 p-------~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~-~k~----~~l~~ll 158 (486)
+ ..+|+++||||+++.+..+...++.+|..+.+...... .......+.+.++.+... .+. ..+...+
T Consensus 204 ~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (579)
T 3sqw_A 204 NEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN-EPEAHERIDQSVVISEKFANSIFAAVEHIKKQI 282 (579)
T ss_dssp HHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS-SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHH
T ss_pred hhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcc-ccccccccceEEEEecchhhhHHHHHHHHHHHH
Confidence 4 37799999999999999999999999877765432211 123344677777766542 222 2223333
Q ss_pred HhhccCCeEEEEecCHHHHHHHHHHHHHc---CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCC
Q 011428 159 KLELVQKKALIFTNTIDMAFRLKLFLEKF---GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEG 235 (486)
Q Consensus 159 k~~~~~~k~IIFvns~~~~~~l~~~L~~~---gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~ 235 (486)
......+++||||+|+..|..++..|... ++.+..+||+|++.+|..+++.|+.|.++|||||+++
T Consensus 283 ~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~----------- 351 (579)
T 3sqw_A 283 KERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVG----------- 351 (579)
T ss_dssp HHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGG-----------
T ss_pred hhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchh-----------
Confidence 33344679999999999999999999987 9999999999999999999999999999999999984
Q ss_pred CCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHH
Q 011428 236 GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315 (486)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~ 315 (486)
++|||+|+|++||+||+|.++.+|+||+|||||+|+.|.|++|+++.|...++.+++.
T Consensus 352 ----------------------~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 409 (579)
T 3sqw_A 352 ----------------------ARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 409 (579)
T ss_dssp ----------------------TSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred ----------------------hcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999888877
Q ss_pred hcc
Q 011428 316 VGD 318 (486)
Q Consensus 316 l~~ 318 (486)
...
T Consensus 410 ~~~ 412 (579)
T 3sqw_A 410 KNI 412 (579)
T ss_dssp HCC
T ss_pred hCC
Confidence 643
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-37 Score=315.88 Aligned_cols=260 Identities=28% Similarity=0.433 Sum_probs=234.9
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.++++..++|+.....+...+. .++|+|+||+++.+++..+. ..+.++++|||||||.+.+++|...+..++..+
T Consensus 101 ~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~----~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~ 175 (367)
T 1hv8_A 101 KNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT----LNLKNVKYFILDEADEMLNMGFIKDVEKILNAC 175 (367)
T ss_dssp SCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC----SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTS
T ss_pred CCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC----cccccCCEEEEeCchHhhhhchHHHHHHHHHhC
Confidence 4688999999998877776665 79999999999999998764 567899999999999999999999999999999
Q ss_pred CCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEEE
Q 011428 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIF 170 (486)
Q Consensus 91 p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIF 170 (486)
++..|+++||||++..+..+...++.++..+.... ...+.+.++.+...+++..+..+++ ...+++|||
T Consensus 176 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~lvf 244 (367)
T 1hv8_A 176 NKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI---------NANIEQSYVEVNENERFEALCRLLK--NKEFYGLVF 244 (367)
T ss_dssp CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS---------SSSSEEEEEECCGGGHHHHHHHHHC--STTCCEEEE
T ss_pred CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC---------CCCceEEEEEeChHHHHHHHHHHHh--cCCCcEEEE
Confidence 99999999999999999888888888877665422 2367888899999999999988886 346799999
Q ss_pred ecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCc
Q 011428 171 TNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAK 250 (486)
Q Consensus 171 vns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (486)
|++++.+..++..|...|+.+..+||+++..+|..+++.|++|..+|||||+.
T Consensus 245 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~--------------------------- 297 (367)
T 1hv8_A 245 CKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV--------------------------- 297 (367)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT---------------------------
T ss_pred ECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh---------------------------
Confidence 99999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHHhccc
Q 011428 251 LDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319 (486)
Q Consensus 251 ~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~l~~~ 319 (486)
+++|+|+|++++||+||+|.|..+|+||+||+||.|+.|.+++|+++.+...+..+++.++..
T Consensus 298 ------~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 298 ------MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 360 (367)
T ss_dssp ------HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred ------hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999999999999999999999999999999888888877654
No 9
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.3e-38 Score=341.87 Aligned_cols=270 Identities=29% Similarity=0.403 Sum_probs=225.1
Q ss_pred CeeEEEEeCCCCHHHHHHHH-cCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 12 QLKVVQLTSSMPASDLRAAL-AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l-~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.+.+..++|+.+...+...+ ..+++|||+||++|++++.... ...++.+++|||||||+++++||..++..|+..+
T Consensus 178 ~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l 254 (563)
T 3i5x_A 178 KYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS---NKFFRFVDYKVLDEADRLLEIGFRDDLETISGIL 254 (563)
T ss_dssp TSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH---HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHH
T ss_pred ceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc---ccccccceEEEEeCHHHHhccchHHHHHHHHHhh
Confidence 46688899999888777665 4589999999999999987642 2457889999999999999999999999998776
Q ss_pred C-------CCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchh-hhHH----HHHHHH
Q 011428 91 P-------RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSER-DKLL----YILTLL 158 (486)
Q Consensus 91 p-------~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~-~k~~----~l~~ll 158 (486)
+ ..+|+++||||+++.+..+...++.+|..+.+...... .......+.+.++.+... .+.. .+...+
T Consensus 255 ~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 333 (563)
T 3i5x_A 255 NEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKN-EPEAHERIDQSVVISEKFANSIFAAVEHIKKQI 333 (563)
T ss_dssp HHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSS-SCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHH
T ss_pred hhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCC-CccccccCceEEEECchhHhhHHHHHHHHHHHH
Confidence 3 37899999999999999999999998877765432211 123344677777766542 2222 223333
Q ss_pred HhhccCCeEEEEecCHHHHHHHHHHHHHc---CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCC
Q 011428 159 KLELVQKKALIFTNTIDMAFRLKLFLEKF---GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEG 235 (486)
Q Consensus 159 k~~~~~~k~IIFvns~~~~~~l~~~L~~~---gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~ 235 (486)
......+++||||+++..|..++..|... ++.+..+||+|++.+|..+++.|+.|..+|||||++
T Consensus 334 ~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~------------ 401 (563)
T 3i5x_A 334 KERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------------ 401 (563)
T ss_dssp HHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------------
T ss_pred hhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch------------
Confidence 33344679999999999999999999987 999999999999999999999999999999999998
Q ss_pred CCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHH
Q 011428 236 GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315 (486)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~ 315 (486)
+++|||+|+|++||+||+|.++.+|+||+|||||+|+.|.+++|+++.|...++.+++.
T Consensus 402 ---------------------~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 460 (563)
T 3i5x_A 402 ---------------------GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 460 (563)
T ss_dssp ---------------------GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred ---------------------hhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999988888877
Q ss_pred hcc
Q 011428 316 VGD 318 (486)
Q Consensus 316 l~~ 318 (486)
...
T Consensus 461 ~~~ 463 (563)
T 3i5x_A 461 KNI 463 (563)
T ss_dssp HCC
T ss_pred hCC
Confidence 643
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.5e-38 Score=324.72 Aligned_cols=264 Identities=30% Similarity=0.464 Sum_probs=226.3
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccC-CCcHHHHHHHHHH
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAV 89 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~i~~~ 89 (486)
.++.+....++...... ....++|+|+||+++.+++.... ...+.++++|||||||++++ .+|...+..+...
T Consensus 123 ~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~---~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~ 196 (412)
T 3fht_A 123 PELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLK---FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 196 (412)
T ss_dssp TTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSC---SSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHT
T ss_pred ccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcC---CcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhh
Confidence 35677777776544322 13468999999999999996532 25568899999999999987 7899999999999
Q ss_pred CCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcch-hhhHHHHHHHHHhhccCCeEE
Q 011428 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE-RDKLLYILTLLKLELVQKKAL 168 (486)
Q Consensus 90 lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~-~~k~~~l~~llk~~~~~~k~I 168 (486)
++...|+++||||+++.+..+...++.+|..+.+.. .......+.++++.+.. ..+...+..++... ..+++|
T Consensus 197 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l 270 (412)
T 3fht_A 197 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR-----EEETLDTIKQYYVLCSSRDEKFQALCNLYGAI-TIAQAM 270 (412)
T ss_dssp SCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG-----GGSSCTTEEEEEEECSSHHHHHHHHHHHHHHH-SSSEEE
T ss_pred CCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc-----ccccccCceEEEEEcCChHHHHHHHHHHHhhc-CCCCEE
Confidence 999999999999999999999999999999887765 44556678888887764 56777777777653 468999
Q ss_pred EEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCC
Q 011428 169 IFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248 (486)
Q Consensus 169 IFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (486)
|||+++..|..++..|...++.+..+||+|+..+|..+++.|+.|.++|||||+.+
T Consensus 271 vf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~------------------------ 326 (412)
T 3fht_A 271 IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC------------------------ 326 (412)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGG------------------------
T ss_pred EEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcc------------------------
Confidence 99999999999999999999999999999999999999999999999999999984
Q ss_pred CcccccccccccCccCCccEEEEeCCC------CChhhHHHhhhhcccCCCCceEEEEeCcch-hhHHHHHHHHhccc
Q 011428 249 AKLDSEFGVVRGIDFKNVHTVINFEMP------QNAAGYVHRIGRTGRAYNTGASVSLVSPDE-MKIFEEIKSFVGDD 319 (486)
Q Consensus 249 ~~~~~~~gvsrGID~~~V~~VI~~d~P------~s~~~yihRiGRtgR~g~~G~ai~fv~~~e-~~~~~~~~~~l~~~ 319 (486)
++|||+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+.+.+ ...+..+++.+...
T Consensus 327 ---------~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (412)
T 3fht_A 327 ---------ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 395 (412)
T ss_dssp ---------TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCC
T ss_pred ---------ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCc
Confidence 589999999999999999 467899999999999999999999999775 67777887777544
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.1e-36 Score=311.94 Aligned_cols=259 Identities=29% Similarity=0.464 Sum_probs=220.9
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccC-CCcHHHHHHHHHHC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVI 90 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~i~~~l 90 (486)
++.+..++++..... ....++|+|+||+++.+++..+. ..+.++++|||||||.+.+ .++...+..+...+
T Consensus 103 ~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~----~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~ 174 (395)
T 3pey_A 103 KITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKL----MQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL 174 (395)
T ss_dssp CCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTC----BCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTS
T ss_pred CeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCC----cccccCCEEEEEChhhhcCccccHHHHHHHHHhC
Confidence 455555555533221 12378999999999999998764 6688999999999999987 78999999999999
Q ss_pred CCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcc-hhhhHHHHHHHHHhhccCCeEEE
Q 011428 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS-ERDKLLYILTLLKLELVQKKALI 169 (486)
Q Consensus 91 p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~-~~~k~~~l~~llk~~~~~~k~II 169 (486)
+...|+++||||+++.+..+...++.++..+.+.. .......+.+.+..+. ...+...+..++... ..+++||
T Consensus 175 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lv 248 (395)
T 3pey_A 175 PKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT-----NEVNVDAIKQLYMDCKNEADKFDVLTELYGLM-TIGSSII 248 (395)
T ss_dssp CTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG-----GGCSCTTEEEEEEECSSHHHHHHHHHHHHTTT-TSSEEEE
T ss_pred CCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc-----cccccccccEEEEEcCchHHHHHHHHHHHHhc-cCCCEEE
Confidence 99999999999999999999999999998887655 4445567788887774 556777777776543 4689999
Q ss_pred EecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCC
Q 011428 170 FTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249 (486)
Q Consensus 170 Fvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (486)
||++++.|..++..|...|+.+..+||+|+..+|..+++.|+.|.++|||||+..
T Consensus 249 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~------------------------- 303 (395)
T 3pey_A 249 FVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL------------------------- 303 (395)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG-------------------------
T ss_pred EeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh-------------------------
Confidence 9999999999999999999999999999999999999999999999999999984
Q ss_pred cccccccccccCccCCccEEEEeCCCC------ChhhHHHhhhhcccCCCCceEEEEeCcch-hhHHHHHHHHhc
Q 011428 250 KLDSEFGVVRGIDFKNVHTVINFEMPQ------NAAGYVHRIGRTGRAYNTGASVSLVSPDE-MKIFEEIKSFVG 317 (486)
Q Consensus 250 ~~~~~~gvsrGID~~~V~~VI~~d~P~------s~~~yihRiGRtgR~g~~G~ai~fv~~~e-~~~~~~~~~~l~ 317 (486)
++|||+|++++||+||+|. |..+|+||+||+||.|+.|.+++|+.+.+ ...+..+++.+.
T Consensus 304 --------~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 304 --------ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp --------SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred --------hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 5899999999999999999 99999999999999999999999999754 455666666654
No 12
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=8.2e-39 Score=328.34 Aligned_cols=265 Identities=29% Similarity=0.474 Sum_probs=98.5
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.++++..++|+.+...+...+. .++|+|+||+++.+++..+. ..+.++++|||||||.+.+++|...+..++..+
T Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~----~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~ 190 (394)
T 1fuu_A 116 MDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR----FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 190 (394)
T ss_dssp SCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS----SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred CCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC----cchhhCcEEEEEChHHhhCCCcHHHHHHHHHhC
Confidence 4789999999998877766555 78999999999999998764 667899999999999999999999999999999
Q ss_pred CCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhh-hHHHHHHHHHhhccCCeEEE
Q 011428 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALI 169 (486)
Q Consensus 91 p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~-k~~~l~~llk~~~~~~k~II 169 (486)
++..|+++||||+++.+..+...++.+|..+.+.. .......+.++++.+...+ +...+..++... ..+++||
T Consensus 191 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lV 264 (394)
T 1fuu_A 191 PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK-----DELTLEGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVI 264 (394)
T ss_dssp CTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------------------
T ss_pred CCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC-----ccccCCCceEEEEEcCchhhHHHHHHHHHhcC-CCCcEEE
Confidence 99999999999999999999999999998887755 3445556777777776554 667777766543 4679999
Q ss_pred EecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCC
Q 011428 170 FTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249 (486)
Q Consensus 170 Fvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (486)
||++++.+..++..|...++.+..+||+|+..+|..+++.|++|..+|||||+..
T Consensus 265 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~------------------------- 319 (394)
T 1fuu_A 265 FCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL------------------------- 319 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChh-------------------------
Confidence 9999999999999999999999999999999999999999999999999999984
Q ss_pred cccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHHhccc
Q 011428 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDD 319 (486)
Q Consensus 250 ~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~l~~~ 319 (486)
++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..++++++..
T Consensus 320 --------~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~ 381 (394)
T 1fuu_A 320 --------ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 381 (394)
T ss_dssp ----------------------------------------------------------------------
T ss_pred --------hcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCc
Confidence 58999999999999999999999999999999999999999999999887777777665443
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.2e-39 Score=341.03 Aligned_cols=262 Identities=31% Similarity=0.465 Sum_probs=89.6
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccC-CCcHHHHHHHHHH
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAV 89 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~i~~~ 89 (486)
.++.+....++...... ....++|||+||++|++++.+.. ...+.++++|||||||.+++ .+|...+..+...
T Consensus 190 ~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~---~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~ 263 (479)
T 3fmp_B 190 PELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLK---FIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263 (479)
T ss_dssp TTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSC---CCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTT
T ss_pred CCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcC---CcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhh
Confidence 35667767666543221 13468999999999999997532 25568999999999999987 6899999999999
Q ss_pred CCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcch-hhhHHHHHHHHHhhccCCeEE
Q 011428 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE-RDKLLYILTLLKLELVQKKAL 168 (486)
Q Consensus 90 lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~-~~k~~~l~~llk~~~~~~k~I 168 (486)
++..+|+++||||++..+..+...++.+|..+.+.. .......+.|+++.+.. ..++..+..++... ..+++|
T Consensus 264 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l 337 (479)
T 3fmp_B 264 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR-----EEETLDTIKQYYVLCSSRDEKFQALCNLYGAI-TIAQAM 337 (479)
T ss_dssp SCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------------------------
T ss_pred CCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc-----cccCcCCceEEEEEeCCHHHHHHHHHHHHhhc-cCCceE
Confidence 999999999999999999999999999999988866 44556678888888764 56777777776543 367999
Q ss_pred EEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCC
Q 011428 169 IFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPK 248 (486)
Q Consensus 169 IFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (486)
|||+++..|..++..|...++.+..+||+|++.+|..+++.|+.|.++|||||+++
T Consensus 338 vF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~------------------------ 393 (479)
T 3fmp_B 338 IFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVC------------------------ 393 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcccc------------------------
Confidence 99999999999999999999999999999999999999999999999999999994
Q ss_pred CcccccccccccCccCCccEEEEeCCCC------ChhhHHHhhhhcccCCCCceEEEEeCcch-hhHHHHHHHHhc
Q 011428 249 AKLDSEFGVVRGIDFKNVHTVINFEMPQ------NAAGYVHRIGRTGRAYNTGASVSLVSPDE-MKIFEEIKSFVG 317 (486)
Q Consensus 249 ~~~~~~~gvsrGID~~~V~~VI~~d~P~------s~~~yihRiGRtgR~g~~G~ai~fv~~~e-~~~~~~~~~~l~ 317 (486)
++|||+|+|++|||||+|. +..+|+||+|||||+|+.|.+++|+++.+ ...+..+++.+.
T Consensus 394 ---------~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~ 460 (479)
T 3fmp_B 394 ---------ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFN 460 (479)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ---------ccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhC
Confidence 6899999999999999994 67899999999999999999999999765 455555555543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.5e-36 Score=301.17 Aligned_cols=253 Identities=30% Similarity=0.434 Sum_probs=215.1
Q ss_pred CCCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHH
Q 011428 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89 (486)
Q Consensus 10 ~~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~ 89 (486)
..++++..+.|+.+...+...+. .++|+|+||++|.+++..+. ..+.++++||+||||++.+++|...+..++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~----~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~ 156 (337)
T 2z0m_A 82 YMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGV----IDLSSFEIVIIDEADLMFEMGFIDDIKIILAQ 156 (337)
T ss_dssp TSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTS----CCGGGCSEEEEESHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCC----cchhhCcEEEEEChHHhhccccHHHHHHHHhh
Confidence 35788999999999887777665 59999999999999988754 56788999999999999999999999999999
Q ss_pred CCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEE
Q 011428 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALI 169 (486)
Q Consensus 90 lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~II 169 (486)
++...++++||||++..+......++.++..+.. .....++.+.++.+....+... ..+.. ...+++||
T Consensus 157 ~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~lv 225 (337)
T 2z0m_A 157 TSNRKITGLFSATIPEEIRKVVKDFITNYEEIEA--------CIGLANVEHKFVHVKDDWRSKV--QALRE-NKDKGVIV 225 (337)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEEC--------SGGGGGEEEEEEECSSSSHHHH--HHHHT-CCCSSEEE
T ss_pred CCcccEEEEEeCcCCHHHHHHHHHhcCCceeeec--------ccccCCceEEEEEeChHHHHHH--HHHHh-CCCCcEEE
Confidence 9999999999999999998888888888877642 2234467777777765443322 34433 34689999
Q ss_pred EecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCC
Q 011428 170 FTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249 (486)
Q Consensus 170 Fvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (486)
||++++.++.++..|. .+..+||+|+..+|..++++|++|..+|||||+.
T Consensus 226 f~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-------------------------- 275 (337)
T 2z0m_A 226 FVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDV-------------------------- 275 (337)
T ss_dssp ECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHH--------------------------
T ss_pred EEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCc--------------------------
Confidence 9999999999998876 6889999999999999999999999999999998
Q ss_pred cccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHHh
Q 011428 250 KLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316 (486)
Q Consensus 250 ~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~l 316 (486)
+++|+|+|++++||+||+|.|+.+|+||+||+||.|+.|.+++|+. .+...++.+++.+
T Consensus 276 -------~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 276 -------ASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp -------HHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred -------cccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999 7776777766654
No 15
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.4e-36 Score=315.58 Aligned_cols=246 Identities=21% Similarity=0.340 Sum_probs=199.5
Q ss_pred CCeeEEEEeCCCCH---HHHHHHHcCC-CcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccC----------
Q 011428 11 VQLKVVQLTSSMPA---SDLRAALAGP-PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS---------- 76 (486)
Q Consensus 11 ~~i~v~~l~g~~~~---~~q~~~l~~~-~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~---------- 76 (486)
.++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++|||||||++.+
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~------~~~~~~~~iViDEaH~~~~~~~~~d~~l~ 163 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK------LSQKRFDFVFVDDVDAVLKASRNIDTLLM 163 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH------HTTCCCSEEEESCHHHHHHCHHHHHHHHH
T ss_pred CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH------hccccccEEEEeChHhhhhccchhhhHHh
Confidence 58999999999998 5555666554 99999999999988874 5567899999999987654
Q ss_pred -CCcHHH-HHHHHHHCC-----------CCccEEEEeee-cChhHH-HHHHHhccCCcEEEcCCcCCcccccccCcceEE
Q 011428 77 -YGYEDD-LKALSAVIP-----------RGCQCLLMSAT-SSSDVD-KLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 141 (486)
Q Consensus 77 -~g~~~~-l~~i~~~lp-----------~~~q~il~SAT-l~~~v~-~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 141 (486)
+||..+ +..++..+| ...|+++|||| +|..+. .+...++. +.+.. ......++.+.
T Consensus 164 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~i~~~ 234 (414)
T 3oiy_A 164 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR-----LVSVARNITHV 234 (414)
T ss_dssp HTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC-----CCCCCCSEEEE
T ss_pred hcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc-----cccccccchhe
Confidence 778777 888988887 78999999999 665543 33333322 22221 23445678888
Q ss_pred EEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCcee-ecCCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011428 142 WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA-ILNAELPQNSRLHILEEFNAGLFDYLIA 220 (486)
Q Consensus 142 ~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~-~lhs~l~~~~R~~i~~~F~~g~~~iLIa 220 (486)
++.+ ++...+..+++. ..+++||||+++..|+.++..|...|+.+. .+||. +|. ++.|++|.++||||
T Consensus 235 ~~~~---~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS---CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc---CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 8776 455666777765 358999999999999999999999999998 99995 444 99999999999999
Q ss_pred ----cCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCC-ccEEEEeCCC--CChhhHHHhhhhcccCC-
Q 011428 221 ----TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN-VHTVINFEMP--QNAAGYVHRIGRTGRAY- 292 (486)
Q Consensus 221 ----Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~-V~~VI~~d~P--~s~~~yihRiGRtgR~g- 292 (486)
|+++ ++|||+|+ |++||+||+| .+..+|+||+|||||.|
T Consensus 304 t~s~T~~~---------------------------------~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~ 350 (414)
T 3oiy_A 304 VQAYYGKL---------------------------------TRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILN 350 (414)
T ss_dssp ECCTTCCC---------------------------------CCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEET
T ss_pred ecCcCchh---------------------------------hccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCC
Confidence 9984 58999999 9999999999 99999999999999988
Q ss_pred ---CCceEEEEeCcchhhHHHHHHHHhc
Q 011428 293 ---NTGASVSLVSPDEMKIFEEIKSFVG 317 (486)
Q Consensus 293 ---~~G~ai~fv~~~e~~~~~~~~~~l~ 317 (486)
+.|.+++|+ .+...+..+++.+.
T Consensus 351 ~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 351 GVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 589999999 66677788887776
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.6e-35 Score=319.37 Aligned_cols=254 Identities=17% Similarity=0.218 Sum_probs=201.9
Q ss_pred CeeEEEEeCCCCHHHHHHHH------cCCCcEEEECcchHH------HHHHcCCCCCCcCCCCcceEEecccccccCCC-
Q 011428 12 QLKVVQLTSSMPASDLRAAL------AGPPDIVIATPGCMP------KCLSTGVLQSKSFSDSLKILVLDEADLLLSYG- 78 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l------~~~~dIvV~TP~rl~------~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g- 78 (486)
++++..++|+.+...+...+ ...++|||+||++|. +++.. ...+.++.+|||||||++++||
T Consensus 108 gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-----~~~~~~i~~iViDEAH~is~~g~ 182 (591)
T 2v1x_A 108 GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-----AYEARRFTRIAVDEVHCCSQWGH 182 (591)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-----HHHTTCEEEEEEETGGGGSTTCT
T ss_pred CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-----hhhccCCcEEEEECccccccccc
Confidence 78899999999887665432 468999999999874 33332 1456789999999999999998
Q ss_pred -cHHHHHH---HHHHCCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcc--hhhhHH
Q 011428 79 -YEDDLKA---LSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS--ERDKLL 152 (486)
Q Consensus 79 -~~~~l~~---i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~--~~~k~~ 152 (486)
|..++.. +...+| ..|+++||||+++.+......++..+..+.+.. .....++...+.... ..++..
T Consensus 183 dfr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~------~~~r~nl~~~v~~~~~~~~~~~~ 255 (591)
T 2v1x_A 183 DFRPDYKALGILKRQFP-NASLIGLTATATNHVLTDAQKILCIEKCFTFTA------SFNRPNLYYEVRQKPSNTEDFIE 255 (591)
T ss_dssp TCCGGGGGGGHHHHHCT-TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC------CCCCTTEEEEEEECCSSHHHHHH
T ss_pred ccHHHHHHHHHHHHhCC-CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec------CCCCcccEEEEEeCCCcHHHHHH
Confidence 7766654 344444 799999999999988766665555443322221 122334443333332 244566
Q ss_pred HHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccC
Q 011428 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQS 232 (486)
Q Consensus 153 ~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~ 232 (486)
.+..++......+++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|..|.++|||||+..
T Consensus 256 ~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~-------- 327 (591)
T 2v1x_A 256 DIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF-------- 327 (591)
T ss_dssp HHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS--------
T ss_pred HHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh--------
Confidence 677777654457899999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHH
Q 011428 233 DEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFE 310 (486)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~ 310 (486)
.+|||+|+|++||+||+|.|+++|+||+||+||.|.+|.|++|+++.|...+.
T Consensus 328 -------------------------~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~ 380 (591)
T 2v1x_A 328 -------------------------GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRIS 380 (591)
T ss_dssp -------------------------CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHH
T ss_pred -------------------------hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHH
Confidence 47999999999999999999999999999999999999999999998765443
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-35 Score=314.18 Aligned_cols=244 Identities=29% Similarity=0.452 Sum_probs=190.3
Q ss_pred CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccC-CCcHHHHHHHHHHCCCCccEEEEeeecChhHHHHH
Q 011428 33 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLK 111 (486)
Q Consensus 33 ~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~ 111 (486)
..++|+|+||+++.+++..+. ..+.++++|||||||.+.+ .+|...+..+...++...|+++||||+++.+..+.
T Consensus 234 ~~~~Ivv~T~~~l~~~l~~~~----~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~ 309 (508)
T 3fho_A 234 IDAQIVIGTPGTVMDLMKRRQ----LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYA 309 (508)
T ss_dssp CCCSEEEECHHHHHHHHHTTC----SCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHcCC----ccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHH
Confidence 378999999999999998765 5678999999999999988 68999999999999999999999999999999999
Q ss_pred HHhccCCcEEEcCCcCCcccccccCcceEEEEEcc-hhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCc
Q 011428 112 KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS-ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK 190 (486)
Q Consensus 112 ~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~-~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~ 190 (486)
..++.++..+.+.. .......+.+.++.+. ...+...+..++... ..+++||||+++..|..++..|.+.++.
T Consensus 310 ~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~ 383 (508)
T 3fho_A 310 ERFAPNANEIRLKT-----EELSVEGIKQLYMDCQSEEHKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHT 383 (508)
T ss_dssp HHHSTTCEEECCCC-----CC----CCCCEEEEC--CHHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCC
T ss_pred HHhcCCCeEEEecc-----ccCCcccceEEEEECCchHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCc
Confidence 99999998887655 3444556777777764 456777777776543 4689999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEE
Q 011428 191 SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI 270 (486)
Q Consensus 191 ~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI 270 (486)
+..+||+|+..+|..+++.|++|.++|||||+.. ++|||+|+|++||
T Consensus 384 v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l---------------------------------~~GiDip~v~~VI 430 (508)
T 3fho_A 384 VACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVI---------------------------------ARGIDVSQVNLVV 430 (508)
T ss_dssp CCEEC-----CTTGGGTHHHHSSSCCCCEECC--------------------------------------CCCTTCCEEE
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChh---------------------------------hcCCCccCCCEEE
Confidence 9999999999999999999999999999999984 5899999999999
Q ss_pred EeCCC------CChhhHHHhhhhcccCCCCceEEEEeCcc-hhhHHHHHHHHhccc
Q 011428 271 NFEMP------QNAAGYVHRIGRTGRAYNTGASVSLVSPD-EMKIFEEIKSFVGDD 319 (486)
Q Consensus 271 ~~d~P------~s~~~yihRiGRtgR~g~~G~ai~fv~~~-e~~~~~~~~~~l~~~ 319 (486)
+||+| .|+.+|+||+||+||.|+.|.+++|+.+. +...+..+++++...
T Consensus 431 ~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~ 486 (508)
T 3fho_A 431 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRP 486 (508)
T ss_dssp C----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCC
T ss_pred EECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCC
Confidence 99999 88999999999999999999999999854 556677777776543
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.5e-33 Score=301.82 Aligned_cols=253 Identities=20% Similarity=0.273 Sum_probs=200.1
Q ss_pred CCeeEEEEeCCCCHHHHHH----HHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCC--cHHHHH
Q 011428 11 VQLKVVQLTSSMPASDLRA----ALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG--YEDDLK 84 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~----~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g--~~~~l~ 84 (486)
.++.+..+.|+.+...+.. ...+.++|+|+||++|....... .....++.+|||||||++.+|| |..++.
T Consensus 88 ~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~----~l~~~~~~~vViDEaH~i~~~g~~fr~~~~ 163 (523)
T 1oyw_A 88 NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE----HLAHWNPVLLAVDEAHCISQWGHDFRPEYA 163 (523)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH----HHTTSCEEEEEESSGGGGCTTSSCCCHHHH
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH----HHhhCCCCEEEEeCccccCcCCCccHHHHH
Confidence 3788999999888765432 33467999999999985321111 1334789999999999999998 666554
Q ss_pred H---HHHHCCCCccEEEEeeecChhHHH-HHH-HhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHH
Q 011428 85 A---LSAVIPRGCQCLLMSATSSSDVDK-LKK-LILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLK 159 (486)
Q Consensus 85 ~---i~~~lp~~~q~il~SATl~~~v~~-l~~-~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk 159 (486)
. +...+| +.|++++|||+++.+.. +.. +.+.+|.++... ....++. +......++...+..++.
T Consensus 164 ~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~--------~~r~~l~--~~v~~~~~~~~~l~~~l~ 232 (523)
T 1oyw_A 164 ALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS--------FDRPNIR--YMLMEKFKPLDQLMRYVQ 232 (523)
T ss_dssp GGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC--------CCCTTEE--EEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC--------CCCCceE--EEEEeCCCHHHHHHHHHH
Confidence 4 455665 68999999999988744 333 335566554321 1223443 333344567777777776
Q ss_pred hhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcc
Q 011428 160 LELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVD 239 (486)
Q Consensus 160 ~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~ 239 (486)
.. ..+++||||+|++.++.++..|...|+.+..+||+|+..+|..+++.|..|.++|||||+..
T Consensus 233 ~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~--------------- 296 (523)
T 1oyw_A 233 EQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF--------------- 296 (523)
T ss_dssp HT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTS---------------
T ss_pred hc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh---------------
Confidence 54 46799999999999999999999999999999999999999999999999999999999984
Q ss_pred cccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHH
Q 011428 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312 (486)
Q Consensus 240 ~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~ 312 (486)
.+|||+|+|++||+||+|.|.++|+||+||+||.|..|.+++|+++.|...++.+
T Consensus 297 ------------------~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 297 ------------------GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp ------------------CTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred ------------------hCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999887554433
No 19
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.2e-34 Score=330.89 Aligned_cols=249 Identities=20% Similarity=0.339 Sum_probs=201.8
Q ss_pred CCCeeEEEEeCCCCH---HHHHHHHcCC-CcEEEECcchHHHHHHcCCCCCCcCCCCcceEEeccccccc----------
Q 011428 10 QVQLKVVQLTSSMPA---SDLRAALAGP-PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLL---------- 75 (486)
Q Consensus 10 ~~~i~v~~l~g~~~~---~~q~~~l~~~-~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll---------- 75 (486)
..++++..++|+.+. ..+...+..+ ++|||+||++|++++.. ..+.++++|||||||+++
T Consensus 146 ~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~------l~~~~l~~lViDEaH~l~~~~r~~Dr~L 219 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK------LSQKRFDFVFVDDVDAVLKASRNIDTLL 219 (1104)
T ss_dssp CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH------HHTSCCSEEEESCHHHHTTSSHHHHHHH
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh------hcccCcCEEEEeCCCccccccccchhhh
Confidence 358899999999987 6666767665 99999999999998874 556789999999997655
Q ss_pred C-CCcHHH-HHHHHHHCC-----------CCccEEEEeee-cChhHHH-HHHHhccCCcEEEcCCcCCcccccccCcceE
Q 011428 76 S-YGYEDD-LKALSAVIP-----------RGCQCLLMSAT-SSSDVDK-LKKLILHNPYILTLPEVGDVKDEVIPKNVQQ 140 (486)
Q Consensus 76 ~-~g~~~~-l~~i~~~lp-----------~~~q~il~SAT-l~~~v~~-l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q 140 (486)
+ +||..+ +..++..+| ...|+++|||| .|..+.. +....+. +.+.. ......++.+
T Consensus 220 ~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~-----~~~~~~~i~~ 290 (1104)
T 4ddu_A 220 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR-----LVSVARNITH 290 (1104)
T ss_dssp HTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCB-----CCCCCCCEEE
T ss_pred HhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEecc-----CCCCcCCcee
Confidence 4 898888 899999888 88999999999 5665542 2332222 33322 3345668889
Q ss_pred EEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCcee-ecCCCCCHHHHHHHHHHHhcCCCcEEE
Q 011428 141 FWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA-ILNAELPQNSRLHILEEFNAGLFDYLI 219 (486)
Q Consensus 141 ~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~-~lhs~l~~~~R~~i~~~F~~g~~~iLI 219 (486)
.++.+ ++...+..++.. ..+++|||||+++.|+.++..|...|+.+. .+||. |.. ++.|++|.++|||
T Consensus 291 ~~~~~---~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLV 359 (1104)
T 4ddu_A 291 VRISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILI 359 (1104)
T ss_dssp EEESC---CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEE
T ss_pred EEEec---CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEE
Confidence 88877 466666777765 358999999999999999999999999998 99992 555 9999999999999
Q ss_pred E----cCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCC-ccEEEEeCCCC------------------
Q 011428 220 A----TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKN-VHTVINFEMPQ------------------ 276 (486)
Q Consensus 220 a----Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~-V~~VI~~d~P~------------------ 276 (486)
| ||+ ++||||+|+ |++|||||+|.
T Consensus 360 atas~Tdv---------------------------------larGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l 406 (1104)
T 4ddu_A 360 GVQAYYGK---------------------------------LTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARV 406 (1104)
T ss_dssp EETTTHHH---------------------------------HCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHH
T ss_pred EecCCCCe---------------------------------eEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHH
Confidence 9 998 469999999 99999999998
Q ss_pred ------------------------------------------------------ChhhHHHhhhhcccCCCCc--eEEEE
Q 011428 277 ------------------------------------------------------NAAGYVHRIGRTGRAYNTG--ASVSL 300 (486)
Q Consensus 277 ------------------------------------------------------s~~~yihRiGRtgR~g~~G--~ai~f 300 (486)
++.+|+||+|||||.|..| .++++
T Consensus 407 ~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi 486 (1104)
T 4ddu_A 407 LKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSV 486 (1104)
T ss_dssp HHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEE
Confidence 7889999999999976544 45666
Q ss_pred eCcchhhHHHHHHHHhc
Q 011428 301 VSPDEMKIFEEIKSFVG 317 (486)
Q Consensus 301 v~~~e~~~~~~~~~~l~ 317 (486)
+..+|...++.+++.+.
T Consensus 487 ~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 487 IFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp EECCCHHHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHh
Confidence 66688888888888775
No 20
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.7e-33 Score=308.12 Aligned_cols=260 Identities=18% Similarity=0.177 Sum_probs=197.9
Q ss_pred CCCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchH-HHHHHcCCC--CCCcCCCCcceEEeccccccc-CCC-------
Q 011428 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVL--QSKSFSDSLKILVLDEADLLL-SYG------- 78 (486)
Q Consensus 10 ~~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl-~~~l~~~~~--~~~~~l~~l~~lViDEad~ll-~~g------- 78 (486)
.++++|..++||++...+.. ..+|||+||||++| .++|..+.. .....+..+.++||||||.|| +.+
T Consensus 150 ~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIis 227 (844)
T 1tf5_A 150 FLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIIS 227 (844)
T ss_dssp HTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEE
T ss_pred hcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhc
Confidence 35899999999998765443 34799999999999 777776531 123567899999999999998 664
Q ss_pred --------cHHHHHHHHHHCC---------CCccEE-----------------EEeeecChhHHHHH-----HHhc-cCC
Q 011428 79 --------YEDDLKALSAVIP---------RGCQCL-----------------LMSATSSSDVDKLK-----KLIL-HNP 118 (486)
Q Consensus 79 --------~~~~l~~i~~~lp---------~~~q~i-----------------l~SATl~~~v~~l~-----~~~l-~~p 118 (486)
|..++..|+..+| +..|++ |+|||++..+..+. ..++ .++
T Consensus 228 g~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~ 307 (844)
T 1tf5_A 228 GQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDV 307 (844)
T ss_dssp EEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTT
T ss_pred CCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCC
Confidence 7789999999997 478888 89999875443332 1222 222
Q ss_pred cEE-------EcCCcCC-c----------------------c-cccccCcce----------------------------
Q 011428 119 YIL-------TLPEVGD-V----------------------K-DEVIPKNVQ---------------------------- 139 (486)
Q Consensus 119 ~~i-------~l~~~~~-~----------------------~-~~~~~~~l~---------------------------- 139 (486)
.++ -+++... . . ...+...++
T Consensus 308 dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~i 387 (844)
T 1tf5_A 308 DYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNI 387 (844)
T ss_dssp TEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHH
Confidence 222 1111000 0 0 000000011
Q ss_pred -------------------EEEEEcchhhhHHHHHHHHHhh-ccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCC
Q 011428 140 -------------------QFWISCSERDKLLYILTLLKLE-LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199 (486)
Q Consensus 140 -------------------q~~i~~~~~~k~~~l~~llk~~-~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~ 199 (486)
+.++.++..+|+..+...+... ....++||||+|+..++.|+..|...|+++.+|||+++
T Consensus 388 Y~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~ 467 (844)
T 1tf5_A 388 YNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH 467 (844)
T ss_dssp HCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH
T ss_pred hCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCcc
Confidence 2256677889999988877643 34668999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccC--------CccEEEE
Q 011428 200 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFK--------NVHTVIN 271 (486)
Q Consensus 200 ~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~--------~V~~VI~ 271 (486)
+.+|..+.+.|+.| .|+||||++ +||+|++ ++.+|||
T Consensus 468 ~rEr~ii~~ag~~g--~VlIATdmA---------------------------------gRG~DI~l~~~V~~~ggl~VIn 512 (844)
T 1tf5_A 468 EREAQIIEEAGQKG--AVTIATNMA---------------------------------GRGTDIKLGEGVKELGGLAVVG 512 (844)
T ss_dssp HHHHHHHTTTTSTT--CEEEEETTS---------------------------------STTCCCCCCTTSGGGTSEEEEE
T ss_pred HHHHHHHHHcCCCC--eEEEeCCcc---------------------------------ccCcCccccchhhhcCCcEEEE
Confidence 98887666666655 699999995 6999999 8889999
Q ss_pred eCCCCChhhHHHhhhhcccCCCCceEEEEeCcchh
Q 011428 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306 (486)
Q Consensus 272 ~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~ 306 (486)
||+|.|.+.|+||+|||||+|.+|.+++|+++.|.
T Consensus 513 ~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 513 TERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp SSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred ecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 99999999999999999999999999999998875
No 21
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=7.9e-32 Score=294.31 Aligned_cols=260 Identities=20% Similarity=0.174 Sum_probs=171.7
Q ss_pred CCCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchH-HHHHHcCCC--CCCcCCCCcceEEeccccccc-CC--------
Q 011428 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVL--QSKSFSDSLKILVLDEADLLL-SY-------- 77 (486)
Q Consensus 10 ~~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl-~~~l~~~~~--~~~~~l~~l~~lViDEad~ll-~~-------- 77 (486)
.+++++..++||++...+ .+..++||+||||++| .++|..+.. .....+..+.++||||||.|| +.
T Consensus 141 ~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiS 218 (853)
T 2fsf_A 141 FLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIIS 218 (853)
T ss_dssp HTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEE
T ss_pred hcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccccc
Confidence 458999999999987533 3344799999999999 799886631 113567899999999999999 44
Q ss_pred -------CcHHHHHHHHHHCCC--------------------CccEE------------------------EEeeecChh
Q 011428 78 -------GYEDDLKALSAVIPR--------------------GCQCL------------------------LMSATSSSD 106 (486)
Q Consensus 78 -------g~~~~l~~i~~~lp~--------------------~~q~i------------------------l~SATl~~~ 106 (486)
+|..++..|+..+|+ ..|++ |+|||++..
T Consensus 219 g~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~ 298 (853)
T 2fsf_A 219 GPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIML 298 (853)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred CCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchH
Confidence 366788899888874 45654 899998753
Q ss_pred HHHHH-----HHhc--------cCCcEEEcCCcC---------------------Cc--c-cccccCcce----------
Q 011428 107 VDKLK-----KLIL--------HNPYILTLPEVG---------------------DV--K-DEVIPKNVQ---------- 139 (486)
Q Consensus 107 v~~l~-----~~~l--------~~p~~i~l~~~~---------------------~~--~-~~~~~~~l~---------- 139 (486)
+..+. ..++ .++.++.+++.. .+ . ...+...++
T Consensus 299 ~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~k 378 (853)
T 2fsf_A 299 MHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEK 378 (853)
T ss_dssp ----------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSE
T ss_pred HHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhh
Confidence 32221 1111 111111111000 00 0 011111122
Q ss_pred -------------------------------------EEEEEcchhhhHHHHHHHHHhh-ccCCeEEEEecCHHHHHHHH
Q 011428 140 -------------------------------------QFWISCSERDKLLYILTLLKLE-LVQKKALIFTNTIDMAFRLK 181 (486)
Q Consensus 140 -------------------------------------q~~i~~~~~~k~~~l~~llk~~-~~~~k~IIFvns~~~~~~l~ 181 (486)
+.++.++..+|+..+...+... ....++||||+|++.++.|+
T Consensus 379 l~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls 458 (853)
T 2fsf_A 379 LAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVS 458 (853)
T ss_dssp EEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHH
T ss_pred hhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHH
Confidence 1246678889999999888643 33568999999999999999
Q ss_pred HHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccC
Q 011428 182 LFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGI 261 (486)
Q Consensus 182 ~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGI 261 (486)
..|...|+++.+|||.+.+.+|..+.+.|+.| .|+||||++ +||+
T Consensus 459 ~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmA---------------------------------gRGt 503 (853)
T 2fsf_A 459 NELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMA---------------------------------GRGT 503 (853)
T ss_dssp HHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCC---------------------------------SSCS
T ss_pred HHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccc---------------------------------cCCc
Confidence 99999999999999999999998888999988 699999996 6999
Q ss_pred ccCCc-------------------------------------cEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcc
Q 011428 262 DFKNV-------------------------------------HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD 304 (486)
Q Consensus 262 D~~~V-------------------------------------~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~ 304 (486)
||+.. .+|||||+|.|...|+||+|||||+|.+|.+++|++..
T Consensus 504 DI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~e 583 (853)
T 2fsf_A 504 DIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSME 583 (853)
T ss_dssp CCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred CccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEeccc
Confidence 99974 69999999999999999999999999999999999988
Q ss_pred hh
Q 011428 305 EM 306 (486)
Q Consensus 305 e~ 306 (486)
|.
T Consensus 584 D~ 585 (853)
T 2fsf_A 584 DA 585 (853)
T ss_dssp SG
T ss_pred HH
Confidence 75
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.98 E-value=5.8e-32 Score=289.98 Aligned_cols=254 Identities=17% Similarity=0.188 Sum_probs=138.9
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCc-CCCCcceEEecccccccCCCcHHH-HHHHHHH
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS-FSDSLKILVLDEADLLLSYGYEDD-LKALSAV 89 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~-~l~~l~~lViDEad~ll~~g~~~~-l~~i~~~ 89 (486)
++++..++|+.+...++..+..+++|+|+||++|.+++..+. . .+.++++|||||||++.+++.... +..++..
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~----~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT----LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS----CCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc----ccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 789999999998877777777789999999999999998764 4 678999999999999998874333 3233322
Q ss_pred -C---CCCccEEEEeeecChh-----------HHHHHHHhccCCcEEEcCCcC--CcccccccCcceEEEEE--------
Q 011428 90 -I---PRGCQCLLMSATSSSD-----------VDKLKKLILHNPYILTLPEVG--DVKDEVIPKNVQQFWIS-------- 144 (486)
Q Consensus 90 -l---p~~~q~il~SATl~~~-----------v~~l~~~~l~~p~~i~l~~~~--~~~~~~~~~~l~q~~i~-------- 144 (486)
+ ++..|+++||||++.. +..+...+. +..+...... ...............+.
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD--IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 236 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHT--CSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcC--CeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHH
Confidence 1 3468999999998531 222222211 1111110000 00000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011428 145 -------------------------------------------------------------------------------- 144 (486)
Q Consensus 145 -------------------------------------------------------------------------------- 144 (486)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (556)
T 4a2p_A 237 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 316 (556)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------cchhhhHHHHHHHHHhh---ccCCeEEEE
Q 011428 145 ---------------------------------------------------CSERDKLLYILTLLKLE---LVQKKALIF 170 (486)
Q Consensus 145 ---------------------------------------------------~~~~~k~~~l~~llk~~---~~~~k~IIF 170 (486)
.....|...|..+|... ....++|||
T Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF 396 (556)
T 4a2p_A 317 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 396 (556)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEE
Confidence 00134666666666543 346799999
Q ss_pred ecCHHHHHHHHHHHHHc------------CCceeecCCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCCccccccCCCCCC
Q 011428 171 TNTIDMAFRLKLFLEKF------------GIKSAILNAELPQNSRLHILEEFNA-GLFDYLIATDDTQTKEKDQSDEGGH 237 (486)
Q Consensus 171 vns~~~~~~l~~~L~~~------------gi~~~~lhs~l~~~~R~~i~~~F~~-g~~~iLIaTd~~~~~~~~~~~~~~~ 237 (486)
|++++.+..++.+|... |..+..+||+|++.+|..+++.|+. |.++|||||+++
T Consensus 397 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~------------- 463 (556)
T 4a2p_A 397 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA------------- 463 (556)
T ss_dssp ESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------------
T ss_pred EccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCch-------------
Confidence 99999999999999876 5566677888999999999999999 999999999995
Q ss_pred cccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchh
Q 011428 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306 (486)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~ 306 (486)
++|||+|+|++||+||+|+|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 464 --------------------~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 464 --------------------DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp -----------------------------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred --------------------hcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 589999999999999999999999999999 999 88999999998765
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.9e-32 Score=309.36 Aligned_cols=240 Identities=15% Similarity=0.213 Sum_probs=184.1
Q ss_pred eEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCCCC
Q 011428 14 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93 (486)
Q Consensus 14 ~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~ 93 (486)
.+..++|+.+ +...++|||+||++|.+++..+. ..+.++++|||||||++.+++|...+..++..+|..
T Consensus 253 ~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~----~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~ 321 (1108)
T 3l9o_A 253 DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGS----EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 321 (1108)
T ss_dssp SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCS----SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTT
T ss_pred CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCc----cccccCCEEEEhhhhhccccchHHHHHHHHHhcCCC
Confidence 4666788765 34579999999999999998865 557889999999999999999999999999999999
Q ss_pred ccEEEEeeecChhH--HHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcch------------------------
Q 011428 94 CQCLLMSATSSSDV--DKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSE------------------------ 147 (486)
Q Consensus 94 ~q~il~SATl~~~v--~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~------------------------ 147 (486)
.|+++||||+|... ..+...+...|..+.... ..+..+.++++....
T Consensus 322 ~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~-------~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~ 394 (1108)
T 3l9o_A 322 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN-------FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 394 (1108)
T ss_dssp SEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEEC-------CCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTT
T ss_pred ceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC-------CCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHH
Confidence 99999999998754 355555666666554322 112233333322110
Q ss_pred -------------------------------hhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCc------
Q 011428 148 -------------------------------RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK------ 190 (486)
Q Consensus 148 -------------------------------~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~------ 190 (486)
......++..+.. ...+++||||+++..|..++..|...++.
T Consensus 395 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~ 473 (1108)
T 3l9o_A 395 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 473 (1108)
T ss_dssp C-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----
T ss_pred HHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHH
Confidence 1122222223322 22569999999999999999998654433
Q ss_pred ---------------------------------eeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCC
Q 011428 191 ---------------------------------SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237 (486)
Q Consensus 191 ---------------------------------~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~ 237 (486)
+.++||+|++..|..+++.|..|.++|||||+++
T Consensus 474 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl------------- 540 (1108)
T 3l9o_A 474 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF------------- 540 (1108)
T ss_dssp CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC-------------
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH-------------
Confidence 6889999999999999999999999999999994
Q ss_pred cccccccCCCCCcccccccccccCccCCccEEEEeCC--------CCChhhHHHhhhhcccCC--CCceEEEEeCcch
Q 011428 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEM--------PQNAAGYVHRIGRTGRAY--NTGASVSLVSPDE 305 (486)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~--------P~s~~~yihRiGRtgR~g--~~G~ai~fv~~~e 305 (486)
++|||+|++++||+++. |.|+.+|+||+|||||.| ..|.+++++.+..
T Consensus 541 --------------------a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 541 --------------------SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp --------------------CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred --------------------hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 58999999999998776 346778999999999999 6788888887663
No 24
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.98 E-value=9.4e-32 Score=287.77 Aligned_cols=263 Identities=19% Similarity=0.218 Sum_probs=166.2
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCc-CCCCcceEEecccccccCCC-cHHHHHHHHH
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS-FSDSLKILVLDEADLLLSYG-YEDDLKALSA 88 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~-~l~~l~~lViDEad~ll~~g-~~~~l~~i~~ 88 (486)
.++++..++|+.+...+...+..+++|+|+||++|.+++..+. . .+.++++|||||||++.+.+ |...+..++.
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~----~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 154 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA----IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLD 154 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS----SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc----ccccccCCEEEEECccccCCcchHHHHHHHHHH
Confidence 3789999999997776666666789999999999999998764 3 57889999999999999875 4444444443
Q ss_pred HC-----CCCccEEEEeeecChh--------HHHHHHHh-ccCCcEEEcCCcC--CcccccccCcceEEEEE--------
Q 011428 89 VI-----PRGCQCLLMSATSSSD--------VDKLKKLI-LHNPYILTLPEVG--DVKDEVIPKNVQQFWIS-------- 144 (486)
Q Consensus 89 ~l-----p~~~q~il~SATl~~~--------v~~l~~~~-l~~p~~i~l~~~~--~~~~~~~~~~l~q~~i~-------- 144 (486)
.. +...|+++||||++.. ...+..+. .-++..+...... ...............+.
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 32 2467999999999542 12221111 0111111111000 00000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011428 145 -------------------------------------------------------------------------------- 144 (486)
Q Consensus 145 -------------------------------------------------------------------------------- 144 (486)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------cchhhhHHHHHHHHHhh---ccCCeEEE
Q 011428 145 ----------------------------------------------------CSERDKLLYILTLLKLE---LVQKKALI 169 (486)
Q Consensus 145 ----------------------------------------------------~~~~~k~~~l~~llk~~---~~~~k~II 169 (486)
.....|...+..+|... ...+++||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 394 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 00134666666666543 23589999
Q ss_pred EecCHHHHHHHHHHHHHcC------------CceeecCCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCCccccccCCCCC
Q 011428 170 FTNTIDMAFRLKLFLEKFG------------IKSAILNAELPQNSRLHILEEFNA-GLFDYLIATDDTQTKEKDQSDEGG 236 (486)
Q Consensus 170 Fvns~~~~~~l~~~L~~~g------------i~~~~lhs~l~~~~R~~i~~~F~~-g~~~iLIaTd~~~~~~~~~~~~~~ 236 (486)
||++++.+..++.+|...+ .....+||+|++.+|..+++.|+. |.++|||||+++
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~------------ 462 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVA------------ 462 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCT------------
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchh------------
Confidence 9999999999999999874 344455669999999999999999 999999999995
Q ss_pred CcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHH
Q 011428 237 HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312 (486)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~ 312 (486)
++|||+|+|++||+||+|+|+.+|+||+|| ||. +.|.+++|+++.+......+
T Consensus 463 ---------------------~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 463 ---------------------DEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp ---------------------TCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred ---------------------hcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 589999999999999999999999999999 999 89999999999877544433
No 25
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=1.4e-32 Score=315.71 Aligned_cols=244 Identities=18% Similarity=0.260 Sum_probs=197.4
Q ss_pred eEEEEeCCCCHHHH---HHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 14 KVVQLTSSMPASDL---RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 14 ~v~~l~g~~~~~~q---~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
++..++|+.+...+ ...+.. ++|||+||++|++++.. ++++++|||||||+|+++ ..++..++..+
T Consensus 133 ~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~--------L~~l~~lViDEah~~l~~--~~~~~~i~~~l 201 (1054)
T 1gku_B 133 LIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE--------LGHFDFIFVDDVDAILKA--SKNVDKLLHLL 201 (1054)
T ss_dssp SEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT--------SCCCSEEEESCHHHHHTS--THHHHHHHHHT
T ss_pred eEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH--------hccCCEEEEeChhhhhhc--cccHHHHHHHh
Confidence 89999999988764 444555 99999999999987653 568999999999999995 46777777766
Q ss_pred -----------CCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHH
Q 011428 91 -----------PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLK 159 (486)
Q Consensus 91 -----------p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk 159 (486)
+...|++++|||++.. ..+...++.++..+.+.. ......++.++++ +.++...+..+++
T Consensus 202 gf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~-----~~~~~~~i~~~~~---~~~k~~~L~~ll~ 272 (1054)
T 1gku_B 202 GFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGS-----SRITVRNVEDVAV---NDESISTLSSILE 272 (1054)
T ss_dssp TEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSC-----CEECCCCEEEEEE---SCCCTTTTHHHHT
T ss_pred CcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccC-----cccCcCCceEEEe---chhHHHHHHHHHh
Confidence 4578999999999988 555555555555554433 3344557788777 3566677777776
Q ss_pred hhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEE----cCCCCccccccCCCC
Q 011428 160 LELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA----TDDTQTKEKDQSDEG 235 (486)
Q Consensus 160 ~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIa----Td~~~~~~~~~~~~~ 235 (486)
.. .+++||||+++..|..++..|... +++..+||+|. .+++.|+.|.++|||| ||++
T Consensus 273 ~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~----------- 333 (1054)
T 1gku_B 273 KL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTL----------- 333 (1054)
T ss_dssp TS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC----------------
T ss_pred hc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCee-----------
Confidence 43 678999999999999999999988 99999999983 7889999999999999 8884
Q ss_pred CCcccccccCCCCCcccccccccccCccCCc-cEEEEeCCC---------------------------------------
Q 011428 236 GHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV-HTVINFEMP--------------------------------------- 275 (486)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V-~~VI~~d~P--------------------------------------- 275 (486)
+||||+|+| ++|||||+|
T Consensus 334 ----------------------~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1054)
T 1gku_B 334 ----------------------VRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVER 391 (1054)
T ss_dssp -----------------------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSS
T ss_pred ----------------------EeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 689999996 999999999
Q ss_pred --------------------------------CChhhHHHhhhhcccCCCCc--eEEEEeCcchhhHHHHHHHHhcc
Q 011428 276 --------------------------------QNAAGYVHRIGRTGRAYNTG--ASVSLVSPDEMKIFEEIKSFVGD 318 (486)
Q Consensus 276 --------------------------------~s~~~yihRiGRtgR~g~~G--~ai~fv~~~e~~~~~~~~~~l~~ 318 (486)
.|..+|+||+|||||.|..| .+++|+...+...+..+++.+..
T Consensus 392 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 392 HIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp CHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 79999999999999988876 49999999998888888888876
No 26
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.97 E-value=3.5e-31 Score=289.64 Aligned_cols=260 Identities=20% Similarity=0.173 Sum_probs=200.0
Q ss_pred CCCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchH-HHHHHcCCC--CCCcCCCCcceEEeccccccc-C---------
Q 011428 10 QVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVL--QSKSFSDSLKILVLDEADLLL-S--------- 76 (486)
Q Consensus 10 ~~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl-~~~l~~~~~--~~~~~l~~l~~lViDEad~ll-~--------- 76 (486)
.++++|..++||++...+.. .-++||+||||++| .++|..+.. .....+..+.++||||||.|| +
T Consensus 178 ~lGLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiS 255 (922)
T 1nkt_A 178 FLGLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIIS 255 (922)
T ss_dssp HTTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEE
T ss_pred hcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeec
Confidence 46899999999998754433 33799999999999 888887531 123567889999999999998 3
Q ss_pred ------CCcHHHHHHHHHHCC---------CCccEE-----------------EEeeecChhHHHHH----H-Hhc-cC-
Q 011428 77 ------YGYEDDLKALSAVIP---------RGCQCL-----------------LMSATSSSDVDKLK----K-LIL-HN- 117 (486)
Q Consensus 77 ------~g~~~~l~~i~~~lp---------~~~q~i-----------------l~SATl~~~v~~l~----~-~~l-~~- 117 (486)
.+|..++..|+..+| +..|++ |+|||+++-+..+. . .++ ++
T Consensus 256 g~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~ 335 (922)
T 1nkt_A 256 GPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDK 335 (922)
T ss_dssp EECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTT
T ss_pred CCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccc
Confidence 258899999999998 688998 99999886443322 1 122 22
Q ss_pred ------CcEEEcCCcCC-cc-----------------------cccccCcce----------------------------
Q 011428 118 ------PYILTLPEVGD-VK-----------------------DEVIPKNVQ---------------------------- 139 (486)
Q Consensus 118 ------p~~i~l~~~~~-~~-----------------------~~~~~~~l~---------------------------- 139 (486)
+.++.+++... .. ...+...++
T Consensus 336 dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~i 415 (922)
T 1nkt_A 336 DYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEI 415 (922)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHH
T ss_pred ceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHH
Confidence 22222222100 00 000011111
Q ss_pred -------------------EEEEEcchhhhHHHHHHHHHhhc-cCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCC
Q 011428 140 -------------------QFWISCSERDKLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199 (486)
Q Consensus 140 -------------------q~~i~~~~~~k~~~l~~llk~~~-~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~ 199 (486)
+.++.++..+|+..+...+.... ...++||||+|++.++.|+..|...|+++.+|||.+.
T Consensus 416 Y~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~ 495 (922)
T 1nkt_A 416 YKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH 495 (922)
T ss_dssp HCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH
T ss_pred hCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChh
Confidence 12466778889999888776433 3458999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCc-------------
Q 011428 200 QNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNV------------- 266 (486)
Q Consensus 200 ~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V------------- 266 (486)
+.++..+.+.|+.| .|+||||++ +||+||+.+
T Consensus 496 ~rEa~iia~agr~G--~VtIATnmA---------------------------------gRGtDI~l~~~~~~~~~~~~~~ 540 (922)
T 1nkt_A 496 EQEATIIAVAGRRG--GVTVATNMA---------------------------------GRGTDIVLGGNVDFLTDQRLRE 540 (922)
T ss_dssp HHHHHHHHTTTSTT--CEEEEETTC---------------------------------STTCCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC--eEEEecchh---------------------------------hcCccccCCCCHHHHHHHHHhh
Confidence 88888888888888 699999995 699999975
Q ss_pred ---------------------------------------cEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchh
Q 011428 267 ---------------------------------------HTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306 (486)
Q Consensus 267 ---------------------------------------~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~ 306 (486)
.+|||||.|.|...|+||+|||||.|.+|.+++|++..|.
T Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 541 RGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998875
No 27
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=9.4e-32 Score=297.11 Aligned_cols=263 Identities=22% Similarity=0.222 Sum_probs=158.9
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCc-CCCCcceEEecccccccCCC-cHHHHHHHHH
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS-FSDSLKILVLDEADLLLSYG-YEDDLKALSA 88 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~-~l~~l~~lViDEad~ll~~g-~~~~l~~i~~ 88 (486)
.++++..++|+.+...+...+..+++|+|+||++|.+++..+. . .+.++++|||||||++.... |...+..++.
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~----~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~ 163 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT----IPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD 163 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS----SCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc----ccccccccEEEEeCCCcccCcccHHHHHHHHHH
Confidence 4799999999987766666666689999999999999998764 3 57889999999999998654 3444433333
Q ss_pred H-----CCCCccEEEEeeecC--------hhHHHHHHHh---------------------ccCCcEEEc--CCcCCc---
Q 011428 89 V-----IPRGCQCLLMSATSS--------SDVDKLKKLI---------------------LHNPYILTL--PEVGDV--- 129 (486)
Q Consensus 89 ~-----lp~~~q~il~SATl~--------~~v~~l~~~~---------------------l~~p~~i~l--~~~~~~--- 129 (486)
. .+...|+++||||+. +.+..+.... ...|..... ......
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 2 245789999999986 1222222221 111211100 000000
Q ss_pred ---------------------------c-c--------------------------------------------------
Q 011428 130 ---------------------------K-D-------------------------------------------------- 131 (486)
Q Consensus 130 ---------------------------~-~-------------------------------------------------- 131 (486)
. .
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence 0 0
Q ss_pred -----------------------ccccCcceEEEEEc----------------chhhhHHHHHHHHHhhc---cCCeEEE
Q 011428 132 -----------------------EVIPKNVQQFWISC----------------SERDKLLYILTLLKLEL---VQKKALI 169 (486)
Q Consensus 132 -----------------------~~~~~~l~q~~i~~----------------~~~~k~~~l~~llk~~~---~~~k~II 169 (486)
......+.+.++.. ....|...|..++.... ..+++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 00000111111100 13457777888877652 4679999
Q ss_pred EecCHHHHHHHHHHHHHcC----Cceeec--------CCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCCccccccCCCCC
Q 011428 170 FTNTIDMAFRLKLFLEKFG----IKSAIL--------NAELPQNSRLHILEEFNA-GLFDYLIATDDTQTKEKDQSDEGG 236 (486)
Q Consensus 170 Fvns~~~~~~l~~~L~~~g----i~~~~l--------hs~l~~~~R~~i~~~F~~-g~~~iLIaTd~~~~~~~~~~~~~~ 236 (486)
||+++..+..++..|...| +++..+ ||+|++.+|..+++.|+. |.++|||||+++
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~------------ 471 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA------------ 471 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESS------------
T ss_pred EeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechh------------
Confidence 9999999999999999998 888888 569999999999999998 999999999995
Q ss_pred CcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHH
Q 011428 237 HVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEI 312 (486)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~ 312 (486)
.+|||+|+|++||+||+|.|+.+|+||+|| ||. +.|.++.|++..+......+
T Consensus 472 ---------------------~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 472 ---------------------DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ---------------------CCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred ---------------------hcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 479999999999999999999999999999 998 78999999998876444444
No 28
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5.8e-30 Score=267.64 Aligned_cols=256 Identities=22% Similarity=0.239 Sum_probs=188.0
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
..++..++|+.......... ..++|+|+||+.+...+..+. ..+.++++|||||||.+.+......+...+...+
T Consensus 80 ~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~----~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGR----ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp GGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTS----CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred hhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCC----cchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 34899999998877554433 478999999999999988754 5678899999999999987654444545555556
Q ss_pred CCccEEEEeeecChhHHH---HHHHhccCCcEEEcCCcCCcccccccCcceEEEEEc-----------------------
Q 011428 92 RGCQCLLMSATSSSDVDK---LKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISC----------------------- 145 (486)
Q Consensus 92 ~~~q~il~SATl~~~v~~---l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~----------------------- 145 (486)
+..++++||||+...... +...+...+..+........................
T Consensus 155 ~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (494)
T 1wp9_A 155 KNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLA 234 (494)
T ss_dssp SSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999854433 333332222111111100000000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011428 146 -------------------------------------------------------------------------------- 145 (486)
Q Consensus 146 -------------------------------------------------------------------------------- 145 (486)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (494)
T 1wp9_A 235 ETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTK 314 (494)
T ss_dssp HHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred HhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccch
Confidence
Q ss_pred -------------------------chhhhHHHHHHHHHhh---ccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCC-
Q 011428 146 -------------------------SERDKLLYILTLLKLE---LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNA- 196 (486)
Q Consensus 146 -------------------------~~~~k~~~l~~llk~~---~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs- 196 (486)
....|...+..++... ...+++||||++++.+..++..|...|+.+..+||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~ 394 (494)
T 1wp9_A 315 ASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecc
Confidence 2334666667777653 34789999999999999999999999999999999
Q ss_pred -------CCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEE
Q 011428 197 -------ELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV 269 (486)
Q Consensus 197 -------~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~V 269 (486)
+|+..+|..+++.|++|.++|||||+.+ ++|||+|++++|
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~---------------------------------~~Gldl~~~~~V 441 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVG---------------------------------EEGLDVPEVDLV 441 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGG---------------------------------GGGGGSTTCCEE
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCcc---------------------------------ccCCCchhCCEE
Confidence 9999999999999999999999999884 579999999999
Q ss_pred EEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchh
Q 011428 270 INFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306 (486)
Q Consensus 270 I~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~ 306 (486)
|+||+|+++..|+||+||+||.|. |.++.|+++.+.
T Consensus 442 i~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 442 VFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTR 477 (494)
T ss_dssp EESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSH
T ss_pred EEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCH
Confidence 999999999999999999999998 999999998764
No 29
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4e-29 Score=285.00 Aligned_cols=239 Identities=15% Similarity=0.230 Sum_probs=185.6
Q ss_pred eEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCCCC
Q 011428 14 KVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRG 93 (486)
Q Consensus 14 ~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~ 93 (486)
.+..++|+.+. ...++|+|+||++|.+++..+. ..+.++++|||||||.+.++++...+..++..+|..
T Consensus 155 ~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~----~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGS----EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTC----TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCc----chhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 46667776653 2468999999999999998764 667899999999999999999999999999999999
Q ss_pred ccEEEEeeecChhHH--HHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcc---------h---------------
Q 011428 94 CQCLLMSATSSSDVD--KLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCS---------E--------------- 147 (486)
Q Consensus 94 ~q~il~SATl~~~v~--~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~---------~--------------- 147 (486)
.|+++||||+++..+ .+.......|..+.... ..+..+.++++... .
T Consensus 224 ~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~-------~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 224 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTN-------FRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEEC-------CCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecC-------CCcccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 999999999987543 22222334555544322 11223444443311 0
Q ss_pred -------------------------------hhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCc------
Q 011428 148 -------------------------------RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK------ 190 (486)
Q Consensus 148 -------------------------------~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~------ 190 (486)
...+..+...+.. ...+++||||+++..|+.++..|...++.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~-~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHH-HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 1111223333322 12458999999999999999998775542
Q ss_pred ---------------------------------eeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCC
Q 011428 191 ---------------------------------SAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237 (486)
Q Consensus 191 ---------------------------------~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~ 237 (486)
+.++||+|++.+|..+++.|+.|.++|||||++
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~-------------- 441 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATET-------------- 441 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGG--------------
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehH--------------
Confidence 678999999999999999999999999999998
Q ss_pred cccccccCCCCCcccccccccccCccCCccEEEE----eCC----CCChhhHHHhhhhcccCCC--CceEEEEeCcc
Q 011428 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN----FEM----PQNAAGYVHRIGRTGRAYN--TGASVSLVSPD 304 (486)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~----~d~----P~s~~~yihRiGRtgR~g~--~G~ai~fv~~~ 304 (486)
+++|||+|++++||+ ||. |.|+.+|+||+|||||.|. .|.+++|+.+.
T Consensus 442 -------------------la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 442 -------------------FSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp -------------------GGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred -------------------hhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 468999999999999 999 8999999999999999996 59999999866
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=9.2e-30 Score=285.66 Aligned_cols=256 Identities=19% Similarity=0.209 Sum_probs=144.5
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCc-CCCCcceEEecccccccCCC-cHHHHHHHHHH
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKS-FSDSLKILVLDEADLLLSYG-YEDDLKALSAV 89 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~-~l~~l~~lViDEad~ll~~g-~~~~l~~i~~~ 89 (486)
++++..++|+.+...+...+..+++|||+||++|.+++..+. . .+.++++|||||||++...+ |...+..++..
T Consensus 324 ~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~----~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~ 399 (797)
T 4a2q_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT----LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (797)
T ss_dssp TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS----CCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHH
T ss_pred CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc----ccccccCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 789999999998887777777899999999999999998764 3 57889999999999998765 33333333333
Q ss_pred C----CCCccEEEEeeecCh-----------hHHHHHHHh------------------ccCCcEEE--cCCcCCcc----
Q 011428 90 I----PRGCQCLLMSATSSS-----------DVDKLKKLI------------------LHNPYILT--LPEVGDVK---- 130 (486)
Q Consensus 90 l----p~~~q~il~SATl~~-----------~v~~l~~~~------------------l~~p~~i~--l~~~~~~~---- 130 (486)
. .+..|+++||||++. .+..+...+ +..|.... ........
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHH
Confidence 1 456899999999852 222222211 11111110 00000000
Q ss_pred -------------cccccCcceE-------------EEEE----------------------------------------
Q 011428 131 -------------DEVIPKNVQQ-------------FWIS---------------------------------------- 144 (486)
Q Consensus 131 -------------~~~~~~~l~q-------------~~i~---------------------------------------- 144 (486)
.......+.. +...
T Consensus 480 ~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 559 (797)
T 4a2q_A 480 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (797)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000000000 0000
Q ss_pred -------------------------------------------------cchhhhHHHHHHHHHhh---ccCCeEEEEec
Q 011428 145 -------------------------------------------------CSERDKLLYILTLLKLE---LVQKKALIFTN 172 (486)
Q Consensus 145 -------------------------------------------------~~~~~k~~~l~~llk~~---~~~~k~IIFvn 172 (486)
.....|+..|..+|... ....++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~ 639 (797)
T 4a2q_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (797)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEES
T ss_pred ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEEC
Confidence 00133566666666542 34579999999
Q ss_pred CHHHHHHHHHHHHHc------------CCceeecCCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCCccccccCCCCCCcc
Q 011428 173 TIDMAFRLKLFLEKF------------GIKSAILNAELPQNSRLHILEEFNA-GLFDYLIATDDTQTKEKDQSDEGGHVD 239 (486)
Q Consensus 173 s~~~~~~l~~~L~~~------------gi~~~~lhs~l~~~~R~~i~~~F~~-g~~~iLIaTd~~~~~~~~~~~~~~~~~ 239 (486)
+++.+..|+.+|... |..+..+||+|++.+|..+++.|+. |.++|||||+++
T Consensus 640 ~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~--------------- 704 (797)
T 4a2q_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA--------------- 704 (797)
T ss_dssp SHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC----------------
T ss_pred cHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCch---------------
Confidence 999999999999873 5667778999999999999999999 999999999995
Q ss_pred cccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchh
Q 011428 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306 (486)
Q Consensus 240 ~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~ 306 (486)
++|||+|+|++||+||+|.|+..|+||+|| ||. +.|.+++|+++.+.
T Consensus 705 ------------------~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 705 ------------------DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (797)
T ss_dssp ------------------------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHH
T ss_pred ------------------hcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcH
Confidence 589999999999999999999999999999 999 89999999998765
No 31
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.96 E-value=7.7e-29 Score=282.60 Aligned_cols=244 Identities=14% Similarity=0.181 Sum_probs=179.1
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
++++..++|+.+. ...++|+|+||++|.+++..+. ..+.++++|||||||++.++++...+..++..+|
T Consensus 108 ~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~----~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~ 176 (997)
T 4a4z_A 108 DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGA----DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP 176 (997)
T ss_dssp -CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTC----SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC
T ss_pred CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCc----hhhcCCCEEEEECcccccccchHHHHHHHHHhcc
Confidence 6788888888753 3468999999999999998764 5678999999999999999999999999999999
Q ss_pred CCccEEEEeeecChhHHHHHHHhc---cCCcEEEcCC-cCCcc---------------cc--------------------
Q 011428 92 RGCQCLLMSATSSSDVDKLKKLIL---HNPYILTLPE-VGDVK---------------DE-------------------- 132 (486)
Q Consensus 92 ~~~q~il~SATl~~~v~~l~~~~l---~~p~~i~l~~-~~~~~---------------~~-------------------- 132 (486)
...|++++|||+|+.. .+..++. ..+..+.... ..... ..
T Consensus 177 ~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (997)
T 4a4z_A 177 QHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESA 255 (997)
T ss_dssp TTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----
T ss_pred cCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccc
Confidence 9999999999998765 3333332 1222111100 00000 00
Q ss_pred --------------------------------------------------cccCcceEEEEEcchhhhHHHHHHHHHhhc
Q 011428 133 --------------------------------------------------VIPKNVQQFWISCSERDKLLYILTLLKLEL 162 (486)
Q Consensus 133 --------------------------------------------------~~~~~l~q~~i~~~~~~k~~~l~~llk~~~ 162 (486)
........++..+....++..+...+...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~- 334 (997)
T 4a4z_A 256 KGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR- 334 (997)
T ss_dssp -------------------------------------------------------------CCCCTTHHHHHHHHHHHT-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-
Confidence 00000111222233445566666666644
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHcCC---------------------------------------ceeecCCCCCHHHH
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKFGI---------------------------------------KSAILNAELPQNSR 203 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~gi---------------------------------------~~~~lhs~l~~~~R 203 (486)
..+++||||+++..|+.++..|...++ .+.++||+|++.+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 357999999999999999999977665 47899999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEE--------EeCCC
Q 011428 204 LHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVI--------NFEMP 275 (486)
Q Consensus 204 ~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI--------~~d~P 275 (486)
..+++.|..|.++|||||+. +++|||+|++.+|+ +++.|
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~---------------------------------~a~GIDiP~~~VVi~~~~k~dg~~~~~ 461 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATET---------------------------------FAMGLNLPTRTVIFSSIRKHDGNGLRE 461 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTH---------------------------------HHHSCCCCCSEEEESCSEEEETTEEEE
T ss_pred HHHHHHHHCCCCcEEEEchH---------------------------------hhCCCCCCCceEEEeccccccCccCCC
Confidence 99999999999999999998 46899999955555 23345
Q ss_pred CChhhHHHhhhhcccCC--CCceEEEEe
Q 011428 276 QNAAGYVHRIGRTGRAY--NTGASVSLV 301 (486)
Q Consensus 276 ~s~~~yihRiGRtgR~g--~~G~ai~fv 301 (486)
.|+.+|+||+|||||.| ..|.++.++
T Consensus 462 ~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 462 LTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp CCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCHHHHhHHhcccccCCCCcceEEEEec
Confidence 59999999999999998 466677666
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.96 E-value=1.9e-30 Score=286.81 Aligned_cols=106 Identities=26% Similarity=0.448 Sum_probs=90.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc------CCceeecCCC--------CCHHHHHHHHHHHhcCCCcEEEEcCCCCcccc
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF------GIKSAILNAE--------LPQNSRLHILEEFNAGLFDYLIATDDTQTKEK 229 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~------gi~~~~lhs~--------l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~ 229 (486)
.+++||||++++.++.|+.+|... |+++..+||+ |++.+|..+++.|++|.++|||||+++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~----- 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVA----- 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSC-----
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccc-----
Confidence 689999999999999999999987 9999999999 999999999999999999999999995
Q ss_pred ccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcch
Q 011428 230 DQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305 (486)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e 305 (486)
++|||+|+|++||+||+|.|+.+|+||+||+||. |.+++|+.+.+
T Consensus 475 ----------------------------~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~~ 519 (699)
T 4gl2_A 475 ----------------------------EEGLDIKECNIVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHSG 519 (699)
T ss_dssp ----------------------------CTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEESS
T ss_pred ----------------------------ccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeCC
Confidence 5799999999999999999999999999996554 46666666544
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=4.8e-29 Score=283.71 Aligned_cols=259 Identities=19% Similarity=0.216 Sum_probs=145.9
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCC-cHHHHHHHHHH
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG-YEDDLKALSAV 89 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g-~~~~l~~i~~~ 89 (486)
.++++..++|+.+...+...+..+++|||+||++|.+++..+.+ ..+.++++|||||||++...+ |...+..++..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~---~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL---TSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSC---CCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCcc---ccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 37999999999988777666777899999999999999987641 257889999999999998765 44444444433
Q ss_pred C----CCCccEEEEeeecCh-----------hHHHHHHHh------------------ccCCcEEEcCCcCCcccc----
Q 011428 90 I----PRGCQCLLMSATSSS-----------DVDKLKKLI------------------LHNPYILTLPEVGDVKDE---- 132 (486)
Q Consensus 90 l----p~~~q~il~SATl~~-----------~v~~l~~~~------------------l~~p~~i~l~~~~~~~~~---- 132 (486)
. .+..|+++||||++. .+..+...+ +..|..............
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1 456899999999852 122222111 112211110000000000
Q ss_pred ----------c-----ccCcceEE-------------EEE----------------------------------------
Q 011428 133 ----------V-----IPKNVQQF-------------WIS---------------------------------------- 144 (486)
Q Consensus 133 ----------~-----~~~~l~q~-------------~i~---------------------------------------- 144 (486)
. ....+.+. ...
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00000000 000
Q ss_pred -------------------------------------------------cchhhhHHHHHHHHHhh---ccCCeEEEEec
Q 011428 145 -------------------------------------------------CSERDKLLYILTLLKLE---LVQKKALIFTN 172 (486)
Q Consensus 145 -------------------------------------------------~~~~~k~~~l~~llk~~---~~~~k~IIFvn 172 (486)
..+..|+..|..+|... ....++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 00133555566666543 23579999999
Q ss_pred CHHHHHHHHHHHHHc------------CCceeecCCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCCccccccCCCCCCcc
Q 011428 173 TIDMAFRLKLFLEKF------------GIKSAILNAELPQNSRLHILEEFNA-GLFDYLIATDDTQTKEKDQSDEGGHVD 239 (486)
Q Consensus 173 s~~~~~~l~~~L~~~------------gi~~~~lhs~l~~~~R~~i~~~F~~-g~~~iLIaTd~~~~~~~~~~~~~~~~~ 239 (486)
+++.+..|+.+|... |..+..+||+|++.+|..+++.|+. |.++|||||+++
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~--------------- 704 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVA--------------- 704 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC----------------
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCch---------------
Confidence 999999999999986 5566677999999999999999999 999999999995
Q ss_pred cccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchhh
Q 011428 240 SRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMK 307 (486)
Q Consensus 240 ~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~ 307 (486)
++|||+|+|++||+||+|.|+.+|+||+|| ||. +.|.++.|++..+..
T Consensus 705 ------------------~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 705 ------------------DEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp -----------------------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred ------------------hcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 589999999999999999999999999999 999 789999999887653
No 34
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=232.82 Aligned_cols=168 Identities=26% Similarity=0.403 Sum_probs=135.6
Q ss_pred HHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCce
Q 011428 112 KLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKS 191 (486)
Q Consensus 112 ~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~ 191 (486)
+.++.+|..+.+.. ......++.|+++.+++.+|...|..++... .+++||||+++..+..++..|...|+.+
T Consensus 9 ~~~~~~p~~i~v~~-----~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~ 81 (191)
T 2p6n_A 9 SGVDLGTENLYFQS-----MGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEA 81 (191)
T ss_dssp ------------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCE
T ss_pred ccccCCCEEEEECC-----CCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcE
Confidence 45788898888765 4456678999999999999999999998753 5789999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEE
Q 011428 192 AILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN 271 (486)
Q Consensus 192 ~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~ 271 (486)
..+||+|++.+|..+++.|+.|.++|||||+. +++|+|+|++++||+
T Consensus 82 ~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~---------------------------------~~~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 82 VAIHGGKDQEERTKAIEAFREGKKDVLVATDV---------------------------------ASKGLDFPAIQHVIN 128 (191)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSCSEEEECHH---------------------------------HHTTCCCCCCSEEEE
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCc---------------------------------hhcCCCcccCCEEEE
Confidence 99999999999999999999999999999998 468999999999999
Q ss_pred eCCCCChhhHHHhhhhcccCCCCceEEEEeCcc-hhhHHHHHHHHhccc
Q 011428 272 FEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPD-EMKIFEEIKSFVGDD 319 (486)
Q Consensus 272 ~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~-e~~~~~~~~~~l~~~ 319 (486)
||+|.++.+|+||+|||||.|+.|.+++|+++. +...+..+++.+...
T Consensus 129 ~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~ 177 (191)
T 2p6n_A 129 YDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEA 177 (191)
T ss_dssp SSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999986 667777787777544
No 35
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.5e-28 Score=223.04 Aligned_cols=153 Identities=31% Similarity=0.574 Sum_probs=142.8
Q ss_pred cccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhc
Q 011428 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212 (486)
Q Consensus 133 ~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~ 212 (486)
....++.|+++.++..+|+..|..++... ..+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|+.
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 35567999999999999999999999864 46799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCC
Q 011428 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAY 292 (486)
Q Consensus 213 g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g 292 (486)
|.++|||||+. +++|+|+|++++||+||+|.++.+|+||+||+||.|
T Consensus 84 g~~~vlv~T~~---------------------------------~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g 130 (163)
T 2hjv_A 84 GEYRYLVATDV---------------------------------AARGIDIENISLVINYDLPLEKESYVHRTGRTGRAG 130 (163)
T ss_dssp TSCSEEEECGG---------------------------------GTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTT
T ss_pred CCCeEEEECCh---------------------------------hhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCC
Confidence 99999999998 468999999999999999999999999999999999
Q ss_pred CCceEEEEeCcchhhHHHHHHHHhccc
Q 011428 293 NTGASVSLVSPDEMKIFEEIKSFVGDD 319 (486)
Q Consensus 293 ~~G~ai~fv~~~e~~~~~~~~~~l~~~ 319 (486)
+.|.+++|+++.+...+..+++.++..
T Consensus 131 ~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 131 NKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp CCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 999999999999999999998877544
No 36
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.96 E-value=8.8e-29 Score=274.78 Aligned_cols=240 Identities=24% Similarity=0.273 Sum_probs=187.7
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
++++..++|+...... ....++|+|+||+++..++..+. ..++++++|||||||++.++++...+..++..++
T Consensus 95 g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~----~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~ 167 (720)
T 2zj8_A 95 GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGS----SWIKDVKILVADEIHLIGSRDRGATLEVILAHML 167 (720)
T ss_dssp TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTC----TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB
T ss_pred CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcCh----hhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh
Confidence 7899999998765432 12479999999999999888753 4578999999999999999888999999999887
Q ss_pred CCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEE------Ecc-----hhhhHHHHHHHHHh
Q 011428 92 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI------SCS-----ERDKLLYILTLLKL 160 (486)
Q Consensus 92 ~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i------~~~-----~~~k~~~l~~llk~ 160 (486)
...|+++||||+++ ...+..++... .+.... .+..+..++. ... .......+..++.
T Consensus 168 ~~~~ii~lSATl~n-~~~~~~~l~~~--~~~~~~--------rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 235 (720)
T 2zj8_A 168 GKAQIIGLSATIGN-PEELAEWLNAE--LIVSDW--------RPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR- 235 (720)
T ss_dssp TTBEEEEEECCCSC-HHHHHHHTTEE--EEECCC--------CSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH-
T ss_pred cCCeEEEEcCCcCC-HHHHHHHhCCc--ccCCCC--------CCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh-
Confidence 78999999999986 35555544221 121110 1111222111 111 2334455555543
Q ss_pred hccCCeEEEEecCHHHHHHHHHHHHHc------------------C---------------CceeecCCCCCHHHHHHHH
Q 011428 161 ELVQKKALIFTNTIDMAFRLKLFLEKF------------------G---------------IKSAILNAELPQNSRLHIL 207 (486)
Q Consensus 161 ~~~~~k~IIFvns~~~~~~l~~~L~~~------------------g---------------i~~~~lhs~l~~~~R~~i~ 207 (486)
..+++||||+++..|+.++..|.+. + ..+..+||+|+..+|..++
T Consensus 236 --~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 236 --KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp --TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred --CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 3689999999999999999998753 1 2488999999999999999
Q ss_pred HHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEE----eC----CCCChh
Q 011428 208 EEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN----FE----MPQNAA 279 (486)
Q Consensus 208 ~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~----~d----~P~s~~ 279 (486)
+.|+.|.++|||||+.+ ++|||+|++++||+ || .|.|..
T Consensus 314 ~~f~~g~~~vlvaT~~l---------------------------------~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~ 360 (720)
T 2zj8_A 314 ENFRKGIIKAVVATPTL---------------------------------SAGINTPAFRVIIRDIWRYSDFGMERIPII 360 (720)
T ss_dssp HHHHTTSSCEEEECSTT---------------------------------GGGCCCCBSEEEECCSEECCSSSCEECCHH
T ss_pred HHHHCCCCeEEEECcHh---------------------------------hccCCCCceEEEEcCCeeecCCCCccCCHH
Confidence 99999999999999995 57999999999999 87 599999
Q ss_pred hHHHhhhhcccCC--CCceEEEEeCcch
Q 011428 280 GYVHRIGRTGRAY--NTGASVSLVSPDE 305 (486)
Q Consensus 280 ~yihRiGRtgR~g--~~G~ai~fv~~~e 305 (486)
+|+||+|||||.| ..|.|+.++++.+
T Consensus 361 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 361 EVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999988 5899999998876
No 37
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=1e-28 Score=274.03 Aligned_cols=239 Identities=21% Similarity=0.211 Sum_probs=181.1
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
++++..++|+...... .+ ..++|+|+||+++..++..+. ..++++++|||||||++.+.++...+..++..++
T Consensus 102 g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~----~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~ 174 (715)
T 2va8_A 102 GFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRP----EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK 174 (715)
T ss_dssp TCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCC----GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCCh----hHhhccCEEEEechhhcCCcccchHHHHHHHhcc
Confidence 7889999998755432 22 389999999999999988753 4578999999999999998888888998888887
Q ss_pred CCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEE-----------E-Ecc--------hhhhH
Q 011428 92 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFW-----------I-SCS--------ERDKL 151 (486)
Q Consensus 92 ~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~-----------i-~~~--------~~~k~ 151 (486)
..|+++||||+++ .+.+..++. .+ .+.... .+..+..++ + ... .....
T Consensus 175 -~~~ii~lSATl~n-~~~~~~~l~-~~-~~~~~~--------r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (715)
T 2va8_A 175 -RRNLLALSATISN-YKQIAKWLG-AE-PVATNW--------RPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAII 242 (715)
T ss_dssp -TSEEEEEESCCTT-HHHHHHHHT-CE-EEECCC--------CSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHH
T ss_pred -cCcEEEEcCCCCC-HHHHHHHhC-CC-ccCCCC--------CCCCceEEEEecCCcccceeeecCcchhhhcccchHHH
Confidence 8999999999985 355555443 22 121111 000111111 1 111 13344
Q ss_pred HHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcC------------------------------------CceeecC
Q 011428 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG------------------------------------IKSAILN 195 (486)
Q Consensus 152 ~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~g------------------------------------i~~~~lh 195 (486)
..+..++. ..+++||||++++.|+.++..|.... ..+.++|
T Consensus 243 ~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h 319 (715)
T 2va8_A 243 AYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHH 319 (715)
T ss_dssp HHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEEC
Confidence 44444443 46899999999999999999998642 2488999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEE----
Q 011428 196 AELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN---- 271 (486)
Q Consensus 196 s~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~---- 271 (486)
|+|+..+|..+++.|..|..+|||||+.+ ++|||+|++++||+
T Consensus 320 ~~l~~~~r~~v~~~f~~g~~~vlvaT~~l---------------------------------~~Gidip~~~~VI~~~~~ 366 (715)
T 2va8_A 320 AGLSKALRDLIEEGFRQRKIKVIVATPTL---------------------------------AAGVNLPARTVIIGDIYR 366 (715)
T ss_dssp TTSCHHHHHHHHHHHHTTCSCEEEECGGG---------------------------------GGSSCCCBSEEEECCC--
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEEChHH---------------------------------hcccCCCceEEEEeCCee
Confidence 99999999999999999999999999984 58999999999999
Q ss_pred eC-------CCCChhhHHHhhhhcccCC--CCceEEEEeCcch
Q 011428 272 FE-------MPQNAAGYVHRIGRTGRAY--NTGASVSLVSPDE 305 (486)
Q Consensus 272 ~d-------~P~s~~~yihRiGRtgR~g--~~G~ai~fv~~~e 305 (486)
|| .|.|..+|+||+|||||.| ..|.|+.++++.+
T Consensus 367 ~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 367 FNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp ------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred ccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99 8999999999999999988 4899999998765
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=7.9e-29 Score=274.40 Aligned_cols=241 Identities=18% Similarity=0.220 Sum_probs=185.4
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.++++..++|+...... ....++|+|+||+++..++..+. ..++++++|||||||++.++++...+..++..+
T Consensus 94 ~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~----~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l 166 (702)
T 2p6r_A 94 IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA----SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKM 166 (702)
T ss_dssp TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC----SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh----hHHhhcCEEEEeeeeecCCCCcccHHHHHHHHH
Confidence 37899999998755332 12489999999999999998753 457899999999999999988887777776655
Q ss_pred ---CCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEE------Ecchh-------hhHHHH
Q 011428 91 ---PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWI------SCSER-------DKLLYI 154 (486)
Q Consensus 91 ---p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i------~~~~~-------~k~~~l 154 (486)
++..|+++||||+++ .+.+..++. .+ .+.... .+..+..++. ..... .....+
T Consensus 167 ~~~~~~~~ii~lSATl~n-~~~~~~~l~-~~-~~~~~~--------r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (702)
T 2p6r_A 167 RRMNKALRVIGLSATAPN-VTEIAEWLD-AD-YYVSDW--------RPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELV 235 (702)
T ss_dssp HHHCTTCEEEEEECCCTT-HHHHHHHTT-CE-EEECCC--------CSSCEEEEEECSSEEEEEETTEEEEEECCHHHHH
T ss_pred HhcCcCceEEEECCCcCC-HHHHHHHhC-CC-cccCCC--------CCccceEEEeeCCeeeccCcchhhhhhhhHHHHH
Confidence 568999999999986 455665443 22 222111 1111221111 01111 144555
Q ss_pred HHHHHhhccCCeEEEEecCHHHHHHHHHHHHHc------------------------------CCceeecCCCCCHHHHH
Q 011428 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF------------------------------GIKSAILNAELPQNSRL 204 (486)
Q Consensus 155 ~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~------------------------------gi~~~~lhs~l~~~~R~ 204 (486)
...+. ..+++||||+++..|..++..|... +..+..+||+|+..+|.
T Consensus 236 ~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 312 (702)
T 2p6r_A 236 EECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRR 312 (702)
T ss_dssp HHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHH
T ss_pred HHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHH
Confidence 55543 4689999999999999999988753 24578899999999999
Q ss_pred HHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEE----eC---CCCC
Q 011428 205 HILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN----FE---MPQN 277 (486)
Q Consensus 205 ~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~----~d---~P~s 277 (486)
.+++.|..|..+|||||+.+ ++|||+|++.+||+ || .|.|
T Consensus 313 ~v~~~f~~g~~~vlvaT~~l---------------------------------~~Gidip~~~~VI~~~~~yd~~~~~~s 359 (702)
T 2p6r_A 313 VVEDAFRRGNIKVVVATPTL---------------------------------AAGVNLPARRVIVRSLYRFDGYSKRIK 359 (702)
T ss_dssp HHHHHHHTTSCCEEEECSTT---------------------------------TSSSCCCBSEEEECCSEEESSSEEECC
T ss_pred HHHHHHHCCCCeEEEECcHH---------------------------------hccCCCCceEEEEcCceeeCCCCCcCC
Confidence 99999999999999999995 47999999999999 77 7999
Q ss_pred hhhHHHhhhhcccCC--CCceEEEEeCcch
Q 011428 278 AAGYVHRIGRTGRAY--NTGASVSLVSPDE 305 (486)
Q Consensus 278 ~~~yihRiGRtgR~g--~~G~ai~fv~~~e 305 (486)
..+|+||+||+||.| ..|.|+.++++.+
T Consensus 360 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 360 VSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999988 5899999998876
No 39
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=224.61 Aligned_cols=153 Identities=29% Similarity=0.481 Sum_probs=137.7
Q ss_pred ccCcceEEEEEcchhh-hHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhc
Q 011428 134 IPKNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212 (486)
Q Consensus 134 ~~~~l~q~~i~~~~~~-k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~ 212 (486)
...++.|+|+.|+..+ |...|..++... ..+++||||+++..|..++..|...|+.+..+||+|++.+|..+++.|+.
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4568999999999765 999999998754 47899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCC------CChhhHHHhhh
Q 011428 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMP------QNAAGYVHRIG 286 (486)
Q Consensus 213 g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P------~s~~~yihRiG 286 (486)
|.++|||||+.+ ++|+|+|++++||+||+| .+..+|+||+|
T Consensus 83 g~~~vLvaT~~~---------------------------------~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~G 129 (175)
T 2rb4_A 83 GKEKVLITTNVC---------------------------------ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIG 129 (175)
T ss_dssp TSCSEEEECCSC---------------------------------CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHC
T ss_pred CCCeEEEEecch---------------------------------hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhc
Confidence 999999999984 689999999999999999 99999999999
Q ss_pred hcccCCCCceEEEEeCcchhhHHHHHHHHhcccc
Q 011428 287 RTGRAYNTGASVSLVSPDEMKIFEEIKSFVGDDE 320 (486)
Q Consensus 287 RtgR~g~~G~ai~fv~~~e~~~~~~~~~~l~~~~ 320 (486)
|+||.|+.|.+++|+++.+...+..+++.++...
T Consensus 130 R~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 130 RTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp BC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred ccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 9999999999999999999988888888876543
No 40
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=3.6e-28 Score=222.65 Aligned_cols=152 Identities=23% Similarity=0.441 Sum_probs=139.0
Q ss_pred cCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCC
Q 011428 135 PKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214 (486)
Q Consensus 135 ~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~ 214 (486)
..++.|+|+.++..+|+..|..+++.. ..+++||||++++.+..++..|...|+.+..+||+|++.+|..+++.|++|.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 457999999999999999999999854 4679999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCC
Q 011428 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294 (486)
Q Consensus 215 ~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~ 294 (486)
++|||||+.+ ++|+|+|++++||+||+|.++.+|+||+||+||.|+.
T Consensus 82 ~~vLvaT~~~---------------------------------~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~ 128 (172)
T 1t5i_A 82 RRILVATNLF---------------------------------GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK 128 (172)
T ss_dssp CSEEEESSCC---------------------------------STTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCC
T ss_pred CcEEEECCch---------------------------------hcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCC
Confidence 9999999984 6899999999999999999999999999999999999
Q ss_pred ceEEEEeCcc-hhhHHHHHHHHhcccc
Q 011428 295 GASVSLVSPD-EMKIFEEIKSFVGDDE 320 (486)
Q Consensus 295 G~ai~fv~~~-e~~~~~~~~~~l~~~~ 320 (486)
|.+++|+++. +...+..+++.+....
T Consensus 129 g~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (172)
T 1t5i_A 129 GLAITFVSDENDAKILNDVQDRFEVNI 155 (172)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHHCCCE
T ss_pred cEEEEEEcChhHHHHHHHHHHHHhcch
Confidence 9999999986 4567778887775443
No 41
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=7.5e-28 Score=218.76 Aligned_cols=152 Identities=30% Similarity=0.519 Sum_probs=135.2
Q ss_pred CcceEEEEEcchhh-hHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCC
Q 011428 136 KNVQQFWISCSERD-KLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214 (486)
Q Consensus 136 ~~l~q~~i~~~~~~-k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~ 214 (486)
.++.|+|+.++..+ |...|..++... ..+++||||++++.+..++..|...|+.+..+||+|++.+|..+++.|+.|.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 36899999999877 999999999864 4789999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCC
Q 011428 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294 (486)
Q Consensus 215 ~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~ 294 (486)
++|||||+. +++|+|+|++++||+||+|.++.+|+||+||+||.|+.
T Consensus 81 ~~vlv~T~~---------------------------------~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~ 127 (165)
T 1fuk_A 81 SRILISTDL---------------------------------LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRK 127 (165)
T ss_dssp CSEEEEEGG---------------------------------GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----
T ss_pred CEEEEEcCh---------------------------------hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCC
Confidence 999999998 46899999999999999999999999999999999999
Q ss_pred ceEEEEeCcchhhHHHHHHHHhccccc
Q 011428 295 GASVSLVSPDEMKIFEEIKSFVGDDEN 321 (486)
Q Consensus 295 G~ai~fv~~~e~~~~~~~~~~l~~~~~ 321 (486)
|.+++|+++.+...+..+++++.....
T Consensus 128 g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (165)
T 1fuk_A 128 GVAINFVTNEDVGAMRELEKFYSTQIE 154 (165)
T ss_dssp CEEEEEEETTTHHHHHHHHHHSSCCCE
T ss_pred ceEEEEEcchHHHHHHHHHHHHccCcc
Confidence 999999999999888888888765433
No 42
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=5.4e-28 Score=224.17 Aligned_cols=155 Identities=31% Similarity=0.457 Sum_probs=130.8
Q ss_pred ccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHh
Q 011428 132 EVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFN 211 (486)
Q Consensus 132 ~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~ 211 (486)
.....++.|+++.++..+|...|..+++.....+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|+
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999987655789999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccC
Q 011428 212 AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRA 291 (486)
Q Consensus 212 ~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~ 291 (486)
.|.++|||||+.+ ++|+|+|++++||+||+|.++.+|+||+||+||.
T Consensus 94 ~g~~~vLvaT~~~---------------------------------~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~ 140 (185)
T 2jgn_A 94 SGKSPILVATAVA---------------------------------ARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 140 (185)
T ss_dssp HTSSSEEEEEC---------------------------------------CCCSBSEEEESSCCSSHHHHHHHHTTBCCT
T ss_pred cCCCeEEEEcChh---------------------------------hcCCCcccCCEEEEeCCCCCHHHHHHHccccCCC
Confidence 9999999999984 6899999999999999999999999999999999
Q ss_pred CCCceEEEEeCcchhhHHHHHHHHhccc
Q 011428 292 YNTGASVSLVSPDEMKIFEEIKSFVGDD 319 (486)
Q Consensus 292 g~~G~ai~fv~~~e~~~~~~~~~~l~~~ 319 (486)
|+.|.+++|+++.+...+..+++.+...
T Consensus 141 g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 168 (185)
T 2jgn_A 141 GNLGLATSFFNERNINITKDLLDLLVEA 168 (185)
T ss_dssp TSCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred CCCcEEEEEEchhhHHHHHHHHHHHHhc
Confidence 9999999999999998888888887554
No 43
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=1e-28 Score=267.74 Aligned_cols=214 Identities=20% Similarity=0.233 Sum_probs=161.5
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
+..+...+|+.. +..+++|+|+||++| +..+. ..++++++||||||| +++.+|...+..|+..++
T Consensus 282 g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~----l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 282 GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGG----CSGGAYDIIICDECH-STDSTTILGIGTVLDQAE 346 (666)
T ss_dssp SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTS----CCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTT
T ss_pred CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCC----cccCcccEEEEccch-hcCccHHHHHHHHHHhhh
Confidence 344555566543 457899999999997 34433 668889999999995 567788899999999999
Q ss_pred CCcc--EEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEE
Q 011428 92 RGCQ--CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALI 169 (486)
Q Consensus 92 ~~~q--~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~II 169 (486)
...| +++||||++..+. ...|....+.. . ....+ .++ ..... + .....+++||
T Consensus 347 ~~~~~llil~SAT~~~~i~------~~~p~i~~v~~-----~--~~~~i-~~~---~~~~~-------l-~~~~~~~vLV 401 (666)
T 3o8b_A 347 TAGARLVVLATATPPGSVT------VPHPNIEEVAL-----S--NTGEI-PFY---GKAIP-------I-EAIRGGRHLI 401 (666)
T ss_dssp TTTCSEEEEEESSCTTCCC------CCCTTEEEEEC-----B--SCSSE-EET---TEEEC-------G-GGSSSSEEEE
T ss_pred hcCCceEEEECCCCCcccc------cCCcceEEEee-----c--ccchh-HHH---Hhhhh-------h-hhccCCcEEE
Confidence 8777 7888999998531 12233222111 0 00011 110 00000 0 1224789999
Q ss_pred EecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCC
Q 011428 170 FTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKA 249 (486)
Q Consensus 170 Fvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (486)
|||+++.++.++..|.+.|+.+..+||+|++++ |.++..+||||||+
T Consensus 402 Fv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdV-------------------------- 448 (666)
T 3o8b_A 402 FCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDA-------------------------- 448 (666)
T ss_dssp ECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTT--------------------------
T ss_pred EeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECCh--------------------------
Confidence 999999999999999999999999999999875 45677799999999
Q ss_pred cccccccccccCccCCccEEE----------EeC-----------CCCChhhHHHhhhhcccCCCCceEEEEeCcchhhH
Q 011428 250 KLDSEFGVVRGIDFKNVHTVI----------NFE-----------MPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKI 308 (486)
Q Consensus 250 ~~~~~~gvsrGID~~~V~~VI----------~~d-----------~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~ 308 (486)
++||||++ |++|| ||| +|.|.++|+||+||||| |+.|. ++|+++.+...
T Consensus 449 -------aerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 449 -------LMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp -------HHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred -------HHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 46899996 99988 788 89999999999999999 99999 99999887643
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=1.4e-28 Score=267.55 Aligned_cols=195 Identities=17% Similarity=0.175 Sum_probs=156.6
Q ss_pred CCCCcceEEecccccccCCCcHHHHHHHHHHCC-CCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCc
Q 011428 59 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIP-RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 137 (486)
Q Consensus 59 ~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~ 137 (486)
.++++++|||||||.+ +.+|...+..+...++ ...|+++||||++..+..+.. .++..+.+... .
T Consensus 274 ~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-----~----- 339 (618)
T 2whx_A 274 RVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-----I----- 339 (618)
T ss_dssp SCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-----C-----
T ss_pred cccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-----C-----
Confidence 4789999999999998 7778888888888876 689999999999987543222 34555444320 0
Q ss_pred ceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcE
Q 011428 138 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 217 (486)
Q Consensus 138 l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~i 217 (486)
+. .++..++..+.. ..+++||||+|++.|+.++..|...|+++..+||+ +|..+++.|++|.++|
T Consensus 340 --------~~-~~~~~ll~~l~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~V 404 (618)
T 2whx_A 340 --------PE-RSWNTGFDWITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDF 404 (618)
T ss_dssp --------CS-SCCSSSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSE
T ss_pred --------CH-HHHHHHHHHHHh--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEE
Confidence 00 001112222322 26799999999999999999999999999999985 7888999999999999
Q ss_pred EEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEE--------------------EEeCCCCC
Q 011428 218 LIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTV--------------------INFEMPQN 277 (486)
Q Consensus 218 LIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~V--------------------I~~d~P~s 277 (486)
|||||++ ++|||++ |++| ||||+|.|
T Consensus 405 LVaTdv~---------------------------------~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s 450 (618)
T 2whx_A 405 VVTTDIS---------------------------------EMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVT 450 (618)
T ss_dssp EEECGGG---------------------------------GTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECC
T ss_pred EEECcHH---------------------------------HcCcccC-ceEEEECcceecceecccCCCceEEcccccCC
Confidence 9999994 6899997 9888 88889999
Q ss_pred hhhHHHhhhhcccCCC-CceEEEEeC---cchhhHHHHHHHHh
Q 011428 278 AAGYVHRIGRTGRAYN-TGASVSLVS---PDEMKIFEEIKSFV 316 (486)
Q Consensus 278 ~~~yihRiGRtgR~g~-~G~ai~fv~---~~e~~~~~~~~~~l 316 (486)
.++|+||+|||||+|. .|.+++|++ +.|...+..++..+
T Consensus 451 ~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 451 PASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred HHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 9999999999999965 999999998 78877788887765
No 45
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=2.7e-27 Score=273.52 Aligned_cols=238 Identities=17% Similarity=0.193 Sum_probs=186.3
Q ss_pred CCeeEEEEeCCCCHHHHHHH---Hc-CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHH
Q 011428 11 VQLKVVQLTSSMPASDLRAA---LA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 86 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~---l~-~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i 86 (486)
.++++..++|..+...+... +. +.+||||+||+.+ .. . ..+.++++|||||||++ | .....+
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~~-~----~~~~~l~lvIiDEaH~~---g--~~~~~~ 744 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----QS-D----VKFKDLGLLIVDEEHRF---G--VRHKER 744 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----HS-C----CCCSSEEEEEEESGGGS---C--HHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----hC-C----ccccccceEEEechHhc---C--hHHHHH
Confidence 46889999988877665433 33 4699999999754 32 2 56789999999999994 3 334555
Q ss_pred HHHCCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCe
Q 011428 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKK 166 (486)
Q Consensus 87 ~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k 166 (486)
+..++...++++||||+++....+....+.++.++.... .....+..++..... ......++......++
T Consensus 745 l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~-------~~r~~i~~~~~~~~~---~~i~~~il~~l~~g~q 814 (1151)
T 2eyq_A 745 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP-------ARRLAVKTFVREYDS---MVVREAILREILRGGQ 814 (1151)
T ss_dssp HHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC-------CBCBCEEEEEEECCH---HHHHHHHHHHHTTTCE
T ss_pred HHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC-------CCccccEEEEecCCH---HHHHHHHHHHHhcCCe
Confidence 666677899999999998877666666666555443221 122245555554443 2333334444345789
Q ss_pred EEEEecCHHHHHHHHHHHHHc--CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCccccccc
Q 011428 167 ALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSK 244 (486)
Q Consensus 167 ~IIFvns~~~~~~l~~~L~~~--gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~ 244 (486)
++||||+++.+..++..|.+. ++++..+||+|++.+|..+++.|++|.++|||||++.
T Consensus 815 vlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~-------------------- 874 (1151)
T 2eyq_A 815 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII-------------------- 874 (1151)
T ss_dssp EEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTT--------------------
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcc--------------------
Confidence 999999999999999999988 8899999999999999999999999999999999985
Q ss_pred CCCCCcccccccccccCccCCccEEEEeCC-CCChhhHHHhhhhcccCCCCceEEEEeCcch
Q 011428 245 KHPKAKLDSEFGVVRGIDFKNVHTVINFEM-PQNAAGYVHRIGRTGRAYNTGASVSLVSPDE 305 (486)
Q Consensus 245 ~~~~~~~~~~~gvsrGID~~~V~~VI~~d~-P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e 305 (486)
.+|||+|++++||+++. +.+..+|+||+||+||.|+.|.|++++.+.+
T Consensus 875 -------------e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 875 -------------ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp -------------GGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred -------------eeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 58999999999999998 5689999999999999999999999987654
No 46
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=1.2e-26 Score=219.73 Aligned_cols=150 Identities=30% Similarity=0.443 Sum_probs=138.4
Q ss_pred cceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCc
Q 011428 137 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216 (486)
Q Consensus 137 ~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~ 216 (486)
.+.++++.+...+|+..|..++.... .+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|+.|.++
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHC-CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 46678888999999999999998654 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCce
Q 011428 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 296 (486)
Q Consensus 217 iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ 296 (486)
|||||+++ ++|||+|+|++|||||+|.+..+|+||+|||||.|+.|.
T Consensus 84 vlvaT~~~---------------------------------~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~ 130 (212)
T 3eaq_A 84 VLVATDVA---------------------------------ARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGR 130 (212)
T ss_dssp EEEECTTT---------------------------------TCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BE
T ss_pred EEEecChh---------------------------------hcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCe
Confidence 99999995 589999999999999999999999999999999999999
Q ss_pred EEEEeCcchhhHHHHHHHHhcccc
Q 011428 297 SVSLVSPDEMKIFEEIKSFVGDDE 320 (486)
Q Consensus 297 ai~fv~~~e~~~~~~~~~~l~~~~ 320 (486)
+++|+++.+...+..+++.++...
T Consensus 131 ~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 131 VVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp EEEEECGGGHHHHHHHHHHHSSCC
T ss_pred EEEEEchhHHHHHHHHHHHhcCcC
Confidence 999999999999999988876543
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=3.3e-29 Score=262.73 Aligned_cols=216 Identities=17% Similarity=0.137 Sum_probs=148.7
Q ss_pred EEECcchHHHHHHcCCC----CCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC-CCCccEEEEeeecChhHHHHHH
Q 011428 38 VIATPGCMPKCLSTGVL----QSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI-PRGCQCLLMSATSSSDVDKLKK 112 (486)
Q Consensus 38 vV~TP~rl~~~l~~~~~----~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l-p~~~q~il~SATl~~~v~~l~~ 112 (486)
+|+||+++++++..+.+ .....+.++++|||||||++ +.+|...+..+...+ +...|+++||||+++.+..+..
T Consensus 71 ~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~ 149 (440)
T 1yks_A 71 AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH 149 (440)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC
T ss_pred eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh
Confidence 47888776544332210 11234789999999999998 444444444444443 3579999999999877532221
Q ss_pred HhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCcee
Q 011428 113 LILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192 (486)
Q Consensus 113 ~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~ 192 (486)
.++.+..+ ...+........+ ..+.. ..+++||||++++.|+.++..|...|+++.
T Consensus 150 ---~~~~~~~~------------------~~~~~~~~~~~~~-~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~ 205 (440)
T 1yks_A 150 ---SNGEIEDV------------------QTDIPSEPWNTGH-DWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVV 205 (440)
T ss_dssp ---CSSCEEEE------------------ECCCCSSCCSSSC-HHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEE
T ss_pred ---cCCCeeEe------------------eeccChHHHHHHH-HHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEE
Confidence 11111111 0111111111111 22222 268999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEE-
Q 011428 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN- 271 (486)
Q Consensus 193 ~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~- 271 (486)
.+|| .+|..+++.|++|.++|||||+++ .+|||+| |++||+
T Consensus 206 ~lhg----~~R~~~~~~F~~g~~~vLVaT~v~---------------------------------e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 206 VLNR----KTFEREYPTIKQKKPDFILATDIA---------------------------------EMGANLC-VERVLDC 247 (440)
T ss_dssp ECCS----SSCC--------CCCSEEEESSST---------------------------------TCCTTCC-CSEEEEC
T ss_pred Eecc----hhHHHHHhhhcCCCceEEEECChh---------------------------------heeeccC-ceEEEeC
Confidence 9999 468899999999999999999995 4899999 999996
Q ss_pred ------------------eCCCCChhhHHHhhhhcccC-CCCceEEEEe---CcchhhHHHHHHHHh
Q 011428 272 ------------------FEMPQNAAGYVHRIGRTGRA-YNTGASVSLV---SPDEMKIFEEIKSFV 316 (486)
Q Consensus 272 ------------------~d~P~s~~~yihRiGRtgR~-g~~G~ai~fv---~~~e~~~~~~~~~~l 316 (486)
||+|.+..+|+||+||+||. |..|.|++|+ ++.+...+..++..+
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 99999999999999999997 7899999996 677777777777654
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=5.1e-28 Score=269.40 Aligned_cols=223 Identities=19% Similarity=0.223 Sum_probs=175.6
Q ss_pred CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEeccccc-ccCCC-cHHHHHHHHHHCCCCccEEEEeeecChhHHHH
Q 011428 33 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL-LLSYG-YEDDLKALSAVIPRGCQCLLMSATSSSDVDKL 110 (486)
Q Consensus 33 ~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~-ll~~g-~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l 110 (486)
..++|+|+|||++..++... ..+.++++|||||||. .++.. +...+..+....+ ..|+++||||++. +.+
T Consensus 184 ~~~~I~v~T~G~l~r~l~~~-----~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~--~~l 255 (773)
T 2xau_A 184 NKTILKYMTDGMLLREAMED-----HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDA--EKF 255 (773)
T ss_dssp TTCSEEEEEHHHHHHHHHHS-----TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCC--HHH
T ss_pred CCCCEEEECHHHHHHHHhhC-----ccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccH--HHH
Confidence 46889999999999888764 4688999999999996 55422 2344555655554 7899999999964 445
Q ss_pred HHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHH-HHHHh--hccCCeEEEEecCHHHHHHHHHHHHH-
Q 011428 111 KKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYIL-TLLKL--ELVQKKALIFTNTIDMAFRLKLFLEK- 186 (486)
Q Consensus 111 ~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~-~llk~--~~~~~k~IIFvns~~~~~~l~~~L~~- 186 (486)
... +.++.++.+.. ....+.++|..+...+....+. .++.. ....+++||||++++.++.++..|.+
T Consensus 256 ~~~-~~~~~vi~v~g--------r~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~ 326 (773)
T 2xau_A 256 QRY-FNDAPLLAVPG--------RTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLE 326 (773)
T ss_dssp HHH-TTSCCEEECCC--------CCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHH-hcCCCcccccC--------cccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 554 44455555433 1124677777766655543332 22221 22478999999999999999999985
Q ss_pred ----------cCCceeecCCCCCHHHHHHHHHHHh-----cCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcc
Q 011428 187 ----------FGIKSAILNAELPQNSRLHILEEFN-----AGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKL 251 (486)
Q Consensus 187 ----------~gi~~~~lhs~l~~~~R~~i~~~F~-----~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (486)
.++.++.+||+|++++|..+++.|. .|..+|||||+++
T Consensus 327 ~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ia--------------------------- 379 (773)
T 2xau_A 327 GDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIA--------------------------- 379 (773)
T ss_dssp HHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHH---------------------------
T ss_pred HHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHH---------------------------
Confidence 5788999999999999999999999 9999999999994
Q ss_pred cccccccccCccCCccEEEEeCC------------------CCChhhHHHhhhhcccCCCCceEEEEeCcchh
Q 011428 252 DSEFGVVRGIDFKNVHTVINFEM------------------PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306 (486)
Q Consensus 252 ~~~~gvsrGID~~~V~~VI~~d~------------------P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~ 306 (486)
.+|||+|+|.+||++|+ |.|..+|+||+|||||. ..|.|+.|+++.+.
T Consensus 380 ------e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 380 ------ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp ------HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred ------HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 58999999999999888 89999999999999999 89999999987654
No 49
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=7.5e-28 Score=267.06 Aligned_cols=239 Identities=21% Similarity=0.256 Sum_probs=169.4
Q ss_pred CCeeEEEEeCCCCHHHHHH---HHc-CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHH
Q 011428 11 VQLKVVQLTSSMPASDLRA---ALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKAL 86 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~---~l~-~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i 86 (486)
.++++..++|+.+...+.. .+. +.++|||+||+.+.+ . ..+.++++|||||||++ |+.. ...
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~-----~~~~~l~lVVIDEaHr~---g~~q--r~~ 509 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----D-----VHFKNLGLVIIDEQHRF---GVKQ--REA 509 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----C-----CCCSCCCEEEEESCCCC----------CC
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----h-----hhccCCceEEecccchh---hHHH--HHH
Confidence 5799999999998876443 333 469999999987643 1 56789999999999995 3221 112
Q ss_pred HHHCCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhc-cCC
Q 011428 87 SAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLEL-VQK 165 (486)
Q Consensus 87 ~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~-~~~ 165 (486)
+.......|+++||||+++....+.. ..+..+..+.. .......+..+++. ..+...++..+.... ..+
T Consensus 510 l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~-----~p~~r~~i~~~~~~---~~~~~~l~~~i~~~l~~g~ 579 (780)
T 1gm5_A 510 LMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDE-----MPPGRKEVQTMLVP---MDRVNEVYEFVRQEVMRGG 579 (780)
T ss_dssp CCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECC-----CCSSCCCCEECCCC---SSTHHHHHHHHHHHTTTSC
T ss_pred HHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeec-----cCCCCcceEEEEec---cchHHHHHHHHHHHHhcCC
Confidence 22233478999999998776543332 22222222211 11111233333322 233344445444333 357
Q ss_pred eEEEEecCHH--------HHHHHHHHHHH---cCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCC
Q 011428 166 KALIFTNTID--------MAFRLKLFLEK---FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDE 234 (486)
Q Consensus 166 k~IIFvns~~--------~~~~l~~~L~~---~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~ 234 (486)
+++|||++++ .+..++..|.. .++.+..+||+|++.+|..+++.|++|.++|||||++.
T Consensus 580 qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vi---------- 649 (780)
T 1gm5_A 580 QAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVI---------- 649 (780)
T ss_dssp CBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCC----------
T ss_pred cEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC----------
Confidence 8999999764 47788888877 47899999999999999999999999999999999995
Q ss_pred CCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCC-ChhhHHHhhhhcccCCCCceEEEEeCcchh
Q 011428 235 GGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQ-NAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306 (486)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~-s~~~yihRiGRtgR~g~~G~ai~fv~~~e~ 306 (486)
++|||+|+|++||++|+|. +...|.||+||+||+|..|.|++++.+.+.
T Consensus 650 -----------------------e~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~ 699 (780)
T 1gm5_A 650 -----------------------EVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGE 699 (780)
T ss_dssp -----------------------CSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCH
T ss_pred -----------------------CccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCCh
Confidence 5799999999999999996 688899999999999999999999985444
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=1.4e-26 Score=275.15 Aligned_cols=261 Identities=15% Similarity=0.186 Sum_probs=190.1
Q ss_pred HHHhhcCCCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHH
Q 011428 4 IELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDL 83 (486)
Q Consensus 4 ~~~~~~~~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l 83 (486)
.+.++..++++|..++|+.+.... ....++|+|+||+++..++++.. ....++++++|||||+|+|.+.+ ...+
T Consensus 993 ~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~--~~~~l~~v~lvViDE~H~l~d~r-g~~l 1066 (1724)
T 4f92_B 993 YEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWK--QRKNVQNINLFVVDEVHLIGGEN-GPVL 1066 (1724)
T ss_dssp HHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTT--TCHHHHSCSEEEECCGGGGGSTT-HHHH
T ss_pred HHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcc--cccccceeeEEEeechhhcCCCC-CccH
Confidence 344555678999999998655433 22478999999999877776533 22456889999999999998743 3333
Q ss_pred HH-------HHHHCCCCccEEEEeeecChhHHHHHHHhccC-CcEEEcCCcCCcccccccCcceEEEEEcchhhh-----
Q 011428 84 KA-------LSAVIPRGCQCLLMSATSSSDVDKLKKLILHN-PYILTLPEVGDVKDEVIPKNVQQFWISCSERDK----- 150 (486)
Q Consensus 84 ~~-------i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~-p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k----- 150 (486)
.. +...++...|+++||||+++ .+.+..++..+ ..+..+.. ...+..+..++........
T Consensus 1067 e~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~------~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1067 EVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHP------NVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCG------GGCSSCEEEEEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCC------CCCCCCeEEEEEeccCCCchhhhh
Confidence 33 33456788999999999986 45566655433 33333322 2233456655544332221
Q ss_pred --HHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHc----------------------------------CCceeec
Q 011428 151 --LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF----------------------------------GIKSAIL 194 (486)
Q Consensus 151 --~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~----------------------------------gi~~~~l 194 (486)
...++..+......+++||||+|+..|..++..|... ...+.++
T Consensus 1140 ~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~h 1219 (1724)
T 4f92_B 1140 SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL 1219 (1724)
T ss_dssp TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEE
T ss_pred hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEE
Confidence 2234445555556789999999999999888776431 2357889
Q ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEE---
Q 011428 195 NAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN--- 271 (486)
Q Consensus 195 hs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~--- 271 (486)
||+|++.+|..+++.|.+|.++|||||+. +++|||+|.+.+||.
T Consensus 1220 HagL~~~~R~~VE~lF~~G~i~VLvaT~t---------------------------------lA~GVnlPa~~VVI~~~~ 1266 (1724)
T 4f92_B 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRS---------------------------------LCWGMNVAAHLVIIMDTQ 1266 (1724)
T ss_dssp CTTSCHHHHHHHHHHHHHTSBCEEEEEGG---------------------------------GSSSCCCCBSEEEEECSE
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEEChH---------------------------------HHcCCCCCccEEEEecCc
Confidence 99999999999999999999999999998 578999999999993
Q ss_pred -eC------CCCChhhHHHhhhhcccCCC--CceEEEEeCcchhhHHH
Q 011428 272 -FE------MPQNAAGYVHRIGRTGRAYN--TGASVSLVSPDEMKIFE 310 (486)
Q Consensus 272 -~d------~P~s~~~yihRiGRtgR~g~--~G~ai~fv~~~e~~~~~ 310 (486)
|| .|.++.+|+||+|||||.|. .|.|++|+.+.+...++
T Consensus 1267 ~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~ 1314 (1724)
T 4f92_B 1267 YYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFK 1314 (1724)
T ss_dssp EEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHH
T ss_pred cccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHH
Confidence 33 46789999999999999996 78999998887765544
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.94 E-value=1.6e-27 Score=250.76 Aligned_cols=203 Identities=18% Similarity=0.192 Sum_probs=154.0
Q ss_pred CCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHH-HCCCCccEEEEeeecChhHHHHHH
Q 011428 34 PPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA-VIPRGCQCLLMSATSSSDVDKLKK 112 (486)
Q Consensus 34 ~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~-~lp~~~q~il~SATl~~~v~~l~~ 112 (486)
+..|.++||+.+..++.+. ..+.++++|||||||++ +.++...+..+.. ..++..|+++||||++..+..
T Consensus 87 ~~~i~~~t~~~l~~~l~~~-----~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~--- 157 (451)
T 2jlq_A 87 REIVDLMCHATFTTRLLSS-----TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDP--- 157 (451)
T ss_dssp SCCEEEEEHHHHHHHHHHC-----SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS---
T ss_pred CceEEEEChHHHHHHhhCc-----ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchh---
Confidence 4568899999998888754 55789999999999987 4443433333332 234579999999999886532
Q ss_pred HhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCcee
Q 011428 113 LILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSA 192 (486)
Q Consensus 113 ~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~ 192 (486)
.+..++.++.... .. +. ..+ ..++..+.. ..+++||||++++.|+.++..|...|+.++
T Consensus 158 ~~~~~~~~~~~~~-----~~--p~--~~~----------~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~ 216 (451)
T 2jlq_A 158 FPQSNSPIEDIER-----EI--PE--RSW----------NTGFDWITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVI 216 (451)
T ss_dssp SCCCSSCEEEEEC-----CC--CS--SCC----------SSSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEE
T ss_pred hhcCCCceEecCc-----cC--Cc--hhh----------HHHHHHHHh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEE
Confidence 2334555544321 00 00 000 011222332 267999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEe
Q 011428 193 ILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINF 272 (486)
Q Consensus 193 ~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~ 272 (486)
.+|+++. ..+++.|++|.++||||||++ ++|||+|+ ++||||
T Consensus 217 ~lh~~~~----~~~~~~f~~g~~~vLVaT~v~---------------------------------~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 217 QLSRKTF----DTEYPKTKLTDWDFVVTTDIS---------------------------------EMGANFRA-GRVIDP 258 (451)
T ss_dssp EECTTTH----HHHGGGGGSSCCSEEEECGGG---------------------------------GSSCCCCC-SEEEEC
T ss_pred ECCHHHH----HHHHHhhccCCceEEEECCHH---------------------------------HhCcCCCC-CEEEEC
Confidence 9999865 578999999999999999994 58999999 999999
Q ss_pred C--------------------CCCChhhHHHhhhhcccCCC-CceEEEEeCcc
Q 011428 273 E--------------------MPQNAAGYVHRIGRTGRAYN-TGASVSLVSPD 304 (486)
Q Consensus 273 d--------------------~P~s~~~yihRiGRtgR~g~-~G~ai~fv~~~ 304 (486)
| +|.|..+|+||+|||||.|. .|.+++|+...
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~ 311 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDP 311 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCc
Confidence 9 99999999999999999998 88888887543
No 52
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=3.5e-26 Score=227.45 Aligned_cols=151 Identities=29% Similarity=0.440 Sum_probs=137.3
Q ss_pred cceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCc
Q 011428 137 NVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD 216 (486)
Q Consensus 137 ~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~ 216 (486)
.+.|+++.+...+|+..|..+++... .+++||||++++.+..++..|...|+.+..+||+|++.+|..+++.|+.|.++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 46899999999999999999998765 88999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCce
Q 011428 217 YLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA 296 (486)
Q Consensus 217 iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ 296 (486)
||||||++ ++|||+|+|++|||||+|.+..+|+||+|||||.|+.|.
T Consensus 81 vLVaT~va---------------------------------~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~ 127 (300)
T 3i32_A 81 VLVATDVA---------------------------------ARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGR 127 (300)
T ss_dssp EEEECSTT---------------------------------TCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CE
T ss_pred EEEEechh---------------------------------hcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCce
Confidence 99999995 589999999999999999999999999999999999999
Q ss_pred EEEEeCcchhhHHHHHHHHhccccc
Q 011428 297 SVSLVSPDEMKIFEEIKSFVGDDEN 321 (486)
Q Consensus 297 ai~fv~~~e~~~~~~~~~~l~~~~~ 321 (486)
|++|+++.+...+..+++.++....
T Consensus 128 ~i~l~~~~e~~~~~~ie~~~~~~~~ 152 (300)
T 3i32_A 128 VVLLYGPRERRDVEALERAVGRRFK 152 (300)
T ss_dssp EEEEECSSTHHHHHHHHHHHTCCCE
T ss_pred EEEEeChHHHHHHHHHHHHhCCcce
Confidence 9999999999999999888865433
No 53
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.94 E-value=3.7e-27 Score=251.19 Aligned_cols=243 Identities=12% Similarity=0.115 Sum_probs=174.3
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
++++..++|+.+...+ +...++|+|+||+.+... . ...+.++++|||||||++.. ..+..++..++
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~----~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~ 250 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---P----KEWFSQFGMMMNDECHLATG----KSISSIISGLN 250 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---C----GGGGGGEEEEEEETGGGCCH----HHHHHHGGGCT
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---h----hhhhhcCCEEEEECCcCCCc----ccHHHHHHhcc
Confidence 4678888887766554 567899999999975432 1 24567899999999999865 56788888888
Q ss_pred CCccEEEEeeecChhHHHHH-HHhccCCcEEEcCCcCCccc-ccccCcceEEEEEcc---------------------hh
Q 011428 92 RGCQCLLMSATSSSDVDKLK-KLILHNPYILTLPEVGDVKD-EVIPKNVQQFWISCS---------------------ER 148 (486)
Q Consensus 92 ~~~q~il~SATl~~~v~~l~-~~~l~~p~~i~l~~~~~~~~-~~~~~~l~q~~i~~~---------------------~~ 148 (486)
...++++||||++.....+. ...+.+|.++.+........ ...+..+....+..+ ..
T Consensus 251 ~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (510)
T 2oca_A 251 NCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLS 330 (510)
T ss_dssp TCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCH
T ss_pred cCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccH
Confidence 88999999999987653322 22234454443332110000 011111222222221 11
Q ss_pred hhHHHHHHHHHhhcc--CCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEc-CCCC
Q 011428 149 DKLLYILTLLKLELV--QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIAT-DDTQ 225 (486)
Q Consensus 149 ~k~~~l~~llk~~~~--~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaT-d~~~ 225 (486)
.+...+..++..... ..++||||+ ++.|..++..|...+.++..+||+|+..+|..+++.|++|.++||||| +.
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~-- 407 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGV-- 407 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHH--
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcCh--
Confidence 233344444443321 335566666 999999999999998999999999999999999999999999999999 88
Q ss_pred ccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeC
Q 011428 226 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVS 302 (486)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~ 302 (486)
+++|+|+|+|++||++|+|.++..|+||+||+||.|..|.++++++
T Consensus 408 -------------------------------~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 408 -------------------------------FSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp -------------------------------HHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred -------------------------------hhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 4689999999999999999999999999999999998886666655
No 54
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.94 E-value=1.2e-27 Score=262.10 Aligned_cols=195 Identities=18% Similarity=0.234 Sum_probs=145.7
Q ss_pred CCCCcceEEecccccccCCCcHHHHHHHHHHCC-CCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCc
Q 011428 59 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIP-RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKN 137 (486)
Q Consensus 59 ~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~ 137 (486)
.+.++++|||||||++ +.++...+..+...++ ...|+++||||++..+..+.. .++.+..+..
T Consensus 329 ~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~---~~~~i~~v~~------------ 392 (673)
T 2wv9_A 329 RVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPD---TNSPVHDVSS------------ 392 (673)
T ss_dssp CCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC------------
T ss_pred ccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcc---cCCceEEEee------------
Confidence 5789999999999998 3333344444544443 679999999999876432211 1111111110
Q ss_pred ceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcE
Q 011428 138 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDY 217 (486)
Q Consensus 138 l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~i 217 (486)
.+....... ++..+.. ..+++||||++++.|+.++..|...++++..+||+ +|..+++.|++|.++|
T Consensus 393 ------~~~~~~~~~-~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~V 459 (673)
T 2wv9_A 393 ------EIPDRAWSS-GFEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDF 459 (673)
T ss_dssp ------CCCSSCCSS-CCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSE
T ss_pred ------ecCHHHHHH-HHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceE
Confidence 011111111 1122222 37899999999999999999999999999999994 7999999999999999
Q ss_pred EEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEE--------------------eCCCCC
Q 011428 218 LIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN--------------------FEMPQN 277 (486)
Q Consensus 218 LIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~--------------------~d~P~s 277 (486)
||||+++ .+|||+| |++||| ||+|.|
T Consensus 460 LVaTdv~---------------------------------e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s 505 (673)
T 2wv9_A 460 VITTDIS---------------------------------EMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAIT 505 (673)
T ss_dssp EEECGGG---------------------------------GTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECC
T ss_pred EEECchh---------------------------------hcceeeC-CcEEEECCCcccceeeecccccceecccCCCC
Confidence 9999994 5899999 999998 679999
Q ss_pred hhhHHHhhhhcccC-CCCceEEEEe---CcchhhHHHHHHHHh
Q 011428 278 AAGYVHRIGRTGRA-YNTGASVSLV---SPDEMKIFEEIKSFV 316 (486)
Q Consensus 278 ~~~yihRiGRtgR~-g~~G~ai~fv---~~~e~~~~~~~~~~l 316 (486)
.++|+||+|||||+ |+.|.|++|+ ++.+...+..++..+
T Consensus 506 ~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 506 SASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp HHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 99999999999999 7899999996 577766666666544
No 55
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=2.9e-26 Score=251.42 Aligned_cols=218 Identities=17% Similarity=0.228 Sum_probs=156.9
Q ss_pred ECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCC--CcHHH----HHHHHH------------------HCCCCcc
Q 011428 40 ATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY--GYEDD----LKALSA------------------VIPRGCQ 95 (486)
Q Consensus 40 ~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~--g~~~~----l~~i~~------------------~lp~~~q 95 (486)
+||++|++++..+ .+|||||||.+++. ++... +..+.. .++...|
T Consensus 320 ~tpg~LlDyl~~~-----------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q 388 (661)
T 2d7d_A 320 STPYTLLDYFPDD-----------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHN 388 (661)
T ss_dssp CCCBCGGGGSCSS-----------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSE
T ss_pred CCccHHHHHcccC-----------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCC
Confidence 9999999987542 28999999998632 11111 111111 1124689
Q ss_pred EEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhc-cCCeEEEEecCH
Q 011428 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLEL-VQKKALIFTNTI 174 (486)
Q Consensus 96 ~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~-~~~k~IIFvns~ 174 (486)
+++||||++...... ........+.. ...... ...+ .....+...++..+.... ...++||||+|+
T Consensus 389 ~i~~SAT~~~~~~~~----~~~~~~~~~r~-----~~l~~p---~i~v-~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 389 IVYVSATPGPYEIEH----TDEMVEQIIRP-----TGLLDP---LIDV-RPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp EEEECSSCCHHHHHH----CSSCEEECCCT-----TCCCCC---EEEE-ECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred EEEEecCCChhHHHh----hhCeeeeeecc-----cCCCCC---eEEE-ecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 999999998654222 11111111111 000001 1111 222334444444444333 457999999999
Q ss_pred HHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCccccc
Q 011428 175 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 254 (486)
Q Consensus 175 ~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (486)
..|.+|+..|...|+++..+||++++.+|..+++.|+.|.++|||||+..
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l------------------------------ 505 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL------------------------------ 505 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCC------------------------------
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchh------------------------------
Confidence 99999999999999999999999999999999999999999999999994
Q ss_pred ccccccCccCCccEEEEeCC-----CCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHH
Q 011428 255 FGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSF 315 (486)
Q Consensus 255 ~gvsrGID~~~V~~VI~~d~-----P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~ 315 (486)
++|+|+|+|++||++|. |.|..+|+||+|||||. ..|.+++|+++.+......+++.
T Consensus 506 ---~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~ 567 (661)
T 2d7d_A 506 ---REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAINET 567 (661)
T ss_dssp ---STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHHHH
T ss_pred ---hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHHHH
Confidence 68999999999999997 99999999999999998 78999999999877655554443
No 56
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.93 E-value=4.8e-27 Score=247.92 Aligned_cols=234 Identities=18% Similarity=0.249 Sum_probs=166.7
Q ss_pred CCee-EEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHH
Q 011428 11 VQLK-VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89 (486)
Q Consensus 11 ~~i~-v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~ 89 (486)
++++ +..++|+.+ ..++|+|+||+.+...+.. ...++++|||||||.+.+.+|.. ++..
T Consensus 156 ~~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~-------~~~~~~liIvDEaH~~~~~~~~~----~~~~ 215 (472)
T 2fwr_A 156 FGEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK-------LGNRFMLLIFDEVHHLPAESYVQ----IAQM 215 (472)
T ss_dssp GCGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH-------HTTTCSEEEEETGGGTTSTTTHH----HHHT
T ss_pred CCCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH-------hcCCCCEEEEECCcCCCChHHHH----HHHh
Confidence 4667 777777653 3689999999998776652 12468999999999999888764 5555
Q ss_pred CCCCccEEEEeeecCh-------------------hHHHHHHHhccCCcE--EEcCCcCCcc----------------c-
Q 011428 90 IPRGCQCLLMSATSSS-------------------DVDKLKKLILHNPYI--LTLPEVGDVK----------------D- 131 (486)
Q Consensus 90 lp~~~q~il~SATl~~-------------------~v~~l~~~~l~~p~~--i~l~~~~~~~----------------~- 131 (486)
++ ..+++++|||++. ....+...++..+.. +.+....... .
T Consensus 216 ~~-~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (472)
T 2fwr_A 216 SI-APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARG 294 (472)
T ss_dssp CC-CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCC
T ss_pred cC-CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 55 6789999999873 223332222322221 1111000000 0
Q ss_pred --ccccCcceEE---------------------EEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcC
Q 011428 132 --EVIPKNVQQF---------------------WISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG 188 (486)
Q Consensus 132 --~~~~~~l~q~---------------------~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~g 188 (486)
......+.++ .+.+....|...+..++.. ...+++||||++++.++.++..|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l---- 369 (472)
T 2fwr_A 295 ITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF---- 369 (472)
T ss_dssp CTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT----
T ss_pred ccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh----
Confidence 0000001000 0113345677788888876 34789999999999999999887
Q ss_pred CceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccE
Q 011428 189 IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT 268 (486)
Q Consensus 189 i~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~ 268 (486)
.+..+||+++..+|..+++.|++|.++|||||++. ++|+|+|++++
T Consensus 370 -~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~---------------------------------~~Gldlp~~~~ 415 (472)
T 2fwr_A 370 -LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVL---------------------------------DEGIDVPDANV 415 (472)
T ss_dssp -TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCC---------------------------------CSSSCSCCBSE
T ss_pred -CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCch---------------------------------hcCcccccCcE
Confidence 36789999999999999999999999999999984 57999999999
Q ss_pred EEEeCCCCChhhHHHhhhhcccCCCC-ceE--EEEeCcc
Q 011428 269 VINFEMPQNAAGYVHRIGRTGRAYNT-GAS--VSLVSPD 304 (486)
Q Consensus 269 VI~~d~P~s~~~yihRiGRtgR~g~~-G~a--i~fv~~~ 304 (486)
||+||+|.|+..|+||+||+||.|.. +.+ +.|++..
T Consensus 416 Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 416 GVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp EEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred EEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999999999999999999999954 344 4455543
No 57
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=2.4e-26 Score=273.11 Aligned_cols=255 Identities=16% Similarity=0.283 Sum_probs=185.0
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHH---
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALS--- 87 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~--- 87 (486)
+|++|..++|+++...+. ...++|+|+||+++..++++.. ....++.+++|||||+|++-+ .....++.++
T Consensus 161 ~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~--~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl 234 (1724)
T 4f92_B 161 YGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGG--ERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARA 234 (1724)
T ss_dssp TTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSST--THHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCc--cchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHH
Confidence 689999999998754322 2479999999999755555432 123468899999999998876 3333333332
Q ss_pred ----HHCCCCccEEEEeeecChhHHHHHHHhccCCc--EEEcCCcCCcccccccCcceEEEEEcchhhh---H----HHH
Q 011428 88 ----AVIPRGCQCLLMSATSSSDVDKLKKLILHNPY--ILTLPEVGDVKDEVIPKNVQQFWISCSERDK---L----LYI 154 (486)
Q Consensus 88 ----~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~--~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k---~----~~l 154 (486)
..++...|+|+||||+|+ .+.++.+.-.++. ...+. ....+-.+.++++...+... + ..+
T Consensus 235 ~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~------~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~ 307 (1724)
T 4f92_B 235 IRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFD------NSFRPVPLEQTYVGITEKKAIKRFQIMNEIV 307 (1724)
T ss_dssp HHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECC------GGGCSSCEEEECCEECCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEEC------CCCccCccEEEEeccCCcchhhhhHHHHHHH
Confidence 356788999999999986 5566665433321 11121 22234457776665543321 1 223
Q ss_pred HHHHHhhccCCeEEEEecCHHHHHHHHHHHHHc-------------------------------------CCceeecCCC
Q 011428 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF-------------------------------------GIKSAILNAE 197 (486)
Q Consensus 155 ~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~-------------------------------------gi~~~~lhs~ 197 (486)
+..+.....++++||||+|+..|+.++..|.+. ...+.++||+
T Consensus 308 ~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHag 387 (1724)
T 4f92_B 308 YEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAG 387 (1724)
T ss_dssp HHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSS
T ss_pred HHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCC
Confidence 334443444678999999999999988887542 2347889999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEE----eC
Q 011428 198 LPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN----FE 273 (486)
Q Consensus 198 l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~----~d 273 (486)
|+..+|..+.+.|++|.++|||||+. +++|||+|.+++||. ||
T Consensus 388 L~~~~R~~vE~~F~~G~i~vlvaTsT---------------------------------La~GVNlPa~~vVI~~~~~~~ 434 (1724)
T 4f92_B 388 MTRVDRTLVEDLFADKHIQVLVSTAT---------------------------------LAWGVNLPAHTVIIKGTQVYS 434 (1724)
T ss_dssp SCTHHHHHHHHHHHTTCCCEEEECHH---------------------------------HHHHSCCCBSEEEEECCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEEcch---------------------------------hHhhCCCCCceEEEeCCEEec
Confidence 99999999999999999999999988 578999999999995 55
Q ss_pred C------CCChhhHHHhhhhcccCC--CCceEEEEeCcchhhHHHH
Q 011428 274 M------PQNAAGYVHRIGRTGRAY--NTGASVSLVSPDEMKIFEE 311 (486)
Q Consensus 274 ~------P~s~~~yihRiGRtgR~g--~~G~ai~fv~~~e~~~~~~ 311 (486)
. |.++.+|.||+|||||.| ..|.++++..+.+...+..
T Consensus 435 ~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ 480 (1724)
T 4f92_B 435 PEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLS 480 (1724)
T ss_dssp TTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHH
T ss_pred CcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHH
Confidence 3 578999999999999987 4799999998887654443
No 58
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.93 E-value=4.9e-27 Score=247.56 Aligned_cols=180 Identities=22% Similarity=0.292 Sum_probs=133.8
Q ss_pred cCCCCcceEEeccccc-----ccCCCcHHHHHHHHHHCCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccc
Q 011428 58 SFSDSLKILVLDEADL-----LLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDE 132 (486)
Q Consensus 58 ~~l~~l~~lViDEad~-----ll~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~ 132 (486)
..++++++|||||||. ++..||...+. .+...|+++||||++..+..+... ..|+.. +.. .
T Consensus 108 ~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~~~~~~~~--~~pi~~-~~~------~ 173 (459)
T 2z83_A 108 NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGTTDPFPDS--NAPIHD-LQD------E 173 (459)
T ss_dssp C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTCCCSSCCC--SSCEEE-EEC------C
T ss_pred ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcchhhhccC--CCCeEE-ecc------c
Confidence 3478999999999998 44444433221 235899999999999765322211 223322 111 0
Q ss_pred cccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhc
Q 011428 133 VIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212 (486)
Q Consensus 133 ~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~ 212 (486)
.. ...+..++.++.. ..+++||||+++..|+.++..|...|+.+..+||+ +|..+++.|+.
T Consensus 174 ~~-------------~~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~ 234 (459)
T 2z83_A 174 IP-------------DRAWSSGYEWITE--YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKN 234 (459)
T ss_dssp CC-------------SSCCSSCCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSS
T ss_pred CC-------------cchhHHHHHHHHh--cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccC
Confidence 00 0001111223332 26899999999999999999999999999999995 68889999999
Q ss_pred CCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEE--------------------e
Q 011428 213 GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVIN--------------------F 272 (486)
Q Consensus 213 g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~--------------------~ 272 (486)
|.++||||||++ ++|||+|+ ++||| |
T Consensus 235 g~~~iLVaT~v~---------------------------------~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~ 280 (459)
T 2z83_A 235 GDWDFVITTDIS---------------------------------EMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGN 280 (459)
T ss_dssp CCCSEEEESSCC------------------------------------CCCSC-SEEEECCEECCEEEECSSSCEEEECS
T ss_pred CCceEEEECChH---------------------------------HhCeecCC-CEEEECCccccccccccccccccccc
Confidence 999999999995 58999999 99999 7
Q ss_pred CCCCChhhHHHhhhhcccCCC-CceEEEEeCcc
Q 011428 273 EMPQNAAGYVHRIGRTGRAYN-TGASVSLVSPD 304 (486)
Q Consensus 273 d~P~s~~~yihRiGRtgR~g~-~G~ai~fv~~~ 304 (486)
|+|.|..+|+||+|||||.|. .|.+++|+++.
T Consensus 281 d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 281 PSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 899999999999999999997 99999999986
No 59
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=9.2e-28 Score=219.34 Aligned_cols=150 Identities=29% Similarity=0.552 Sum_probs=137.9
Q ss_pred CcceEEEEEcch-hhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCC
Q 011428 136 KNVQQFWISCSE-RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGL 214 (486)
Q Consensus 136 ~~l~q~~i~~~~-~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~ 214 (486)
.++.|+|+.++. .+|...|..+++.. ..+++||||+++..+..++..|...|+.+..+||+|++.+|..+++.|+.|.
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 368899999988 89999999998753 3679999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCC
Q 011428 215 FDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT 294 (486)
Q Consensus 215 ~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~ 294 (486)
++|||||+.+ ++|+|+|++++||+||+|.++.+|+||+||+||.|+.
T Consensus 81 ~~vLvaT~~~---------------------------------~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~ 127 (170)
T 2yjt_D 81 VNVLVATDVA---------------------------------ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 127 (170)
Confidence 9999999984 6899999999999999999999999999999999999
Q ss_pred ceEEEEeCcchhhHHHHHHHHhccc
Q 011428 295 GASVSLVSPDEMKIFEEIKSFVGDD 319 (486)
Q Consensus 295 G~ai~fv~~~e~~~~~~~~~~l~~~ 319 (486)
|.+++|+++.+...+..+++.++..
T Consensus 128 g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (170)
T 2yjt_D 128 GTAISLVEAHDHLLLGKVGRYIEEP 152 (170)
Confidence 9999999999888887777766543
No 60
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.93 E-value=2.3e-25 Score=244.48 Aligned_cols=219 Identities=18% Similarity=0.246 Sum_probs=156.5
Q ss_pred ECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCC-C--cHHH---HHHHHH------------------HCCCCcc
Q 011428 40 ATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSY-G--YEDD---LKALSA------------------VIPRGCQ 95 (486)
Q Consensus 40 ~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~-g--~~~~---l~~i~~------------------~lp~~~q 95 (486)
+||++|++++..+ .+|||||+|.+++. + |..+ +..+.. ..+...|
T Consensus 314 ~tp~~LlDyl~~~-----------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q 382 (664)
T 1c4o_A 314 EPPYTLLDYFPED-----------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQ 382 (664)
T ss_dssp SCCCCGGGGSCTT-----------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSE
T ss_pred CCchHHHHHHhhc-----------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCC
Confidence 8999998887532 38999999997642 1 1111 111111 1124679
Q ss_pred EEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhh-ccCCeEEEEecCH
Q 011428 96 CLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLE-LVQKKALIFTNTI 174 (486)
Q Consensus 96 ~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~-~~~~k~IIFvns~ 174 (486)
++++|||++...... . ..++...-.. ...... ...+ .+...+...+...+... ....++||||+|+
T Consensus 383 ~i~~SAT~~~~~~~~----~--~~~~~~~~r~---~~l~~p---~i~v-~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 383 VVFVSATPGPFELAH----S--GRVVEQIIRP---TGLLDP---LVRV-KPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp EEEEESSCCHHHHHH----C--SEEEEECSCT---TCCCCC---EEEE-ECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred EEEEecCCCHHHHHh----h--hCeeeeeecc---CCCCCC---eEEE-ecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 999999998654211 1 1112111100 000000 1111 22233444444444333 2467999999999
Q ss_pred HHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCccccc
Q 011428 175 DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSE 254 (486)
Q Consensus 175 ~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (486)
..++.|+..|...|+++..+||+|++.+|..+++.|+.|.++|||||+..
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l------------------------------ 499 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL------------------------------ 499 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCC------------------------------
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChh------------------------------
Confidence 99999999999999999999999999999999999999999999999994
Q ss_pred ccccccCccCCccEEEEeCC-----CCChhhHHHhhhhcccCCCCceEEEEeCcchhhHHHHHHHHh
Q 011428 255 FGVVRGIDFKNVHTVINFEM-----PQNAAGYVHRIGRTGRAYNTGASVSLVSPDEMKIFEEIKSFV 316 (486)
Q Consensus 255 ~gvsrGID~~~V~~VI~~d~-----P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~~~~~~~~~~l 316 (486)
++|+|+|+|++||++|. |.|..+|+||+|||||.+ .|.+++|+++.+......+++..
T Consensus 500 ---~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 500 ---REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp ---CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHHHH
T ss_pred ---hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHHH
Confidence 68999999999999997 999999999999999995 79999999998776665555443
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.92 E-value=1.5e-24 Score=237.19 Aligned_cols=225 Identities=16% Similarity=0.185 Sum_probs=161.9
Q ss_pred CeeEEEEeCCCCHHHHHHHHc---CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHH
Q 011428 12 QLKVVQLTSSMPASDLRAALA---GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSA 88 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~---~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~ 88 (486)
++++..++|+... ... ...+++++|++.+ .....+++|||||||++++.+|...+..++.
T Consensus 203 g~~v~lltG~~~~-----iv~TpGr~~~il~~T~e~~------------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~ 265 (677)
T 3rc3_A 203 GVPCDLVTGEERV-----TVQPNGKQASHVSCTVEMC------------SVTTPYEVAVIDEIQMIRDPARGWAWTRALL 265 (677)
T ss_dssp TCCEEEECSSCEE-----CCSTTCCCCSEEEEEGGGC------------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHH
T ss_pred CCcEEEEECCeeE-----EecCCCcccceeEecHhHh------------hhcccCCEEEEecceecCCccchHHHHHHHH
Confidence 6778888877543 010 1245666665432 2346789999999999999999999999998
Q ss_pred HCC-CCccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeE
Q 011428 89 VIP-RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKA 167 (486)
Q Consensus 89 ~lp-~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~ 167 (486)
.++ ...|++++|||.+ .+..+.... ..+..+.... ....+. +... .+ ..+. .. .+..
T Consensus 266 ~l~~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~--------r~~~l~---~~~~---~l----~~l~-~~-~~g~ 323 (677)
T 3rc3_A 266 GLCAEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYK--------RLTPIS---VLDH---AL----ESLD-NL-RPGD 323 (677)
T ss_dssp HCCEEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECC--------CSSCEE---ECSS---CC----CSGG-GC-CTTE
T ss_pred ccCccceEEEeccchHH-HHHHHHHhc-CCceEEEEee--------ecchHH---HHHH---HH----HHHH-hc-CCCC
Confidence 888 7889999999953 344444433 2233322111 000000 0000 00 0001 11 3456
Q ss_pred EEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhc--CCCcEEEEcCCCCccccccCCCCCCcccccccC
Q 011428 168 LIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA--GLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKK 245 (486)
Q Consensus 168 IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~--g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~ 245 (486)
||||+++..++.++..|++.++.++++||+|++.+|..+++.|+. |.++|||||+++
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~--------------------- 382 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAI--------------------- 382 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGG---------------------
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHH---------------------
Confidence 899999999999999999999999999999999999999999999 889999999994
Q ss_pred CCCCcccccccccccCccCCccEEEEeCC--------------CCChhhHHHhhhhcccCCCC---ceEEEEeCcchhhH
Q 011428 246 HPKAKLDSEFGVVRGIDFKNVHTVINFEM--------------PQNAAGYVHRIGRTGRAYNT---GASVSLVSPDEMKI 308 (486)
Q Consensus 246 ~~~~~~~~~~gvsrGID~~~V~~VI~~d~--------------P~s~~~yihRiGRtgR~g~~---G~ai~fv~~~e~~~ 308 (486)
++|||+ +|++||++|+ |.|..+|+||+|||||.|.. |.++. +.+.+...
T Consensus 383 ------------e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~-l~~~d~~~ 448 (677)
T 3rc3_A 383 ------------GMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTT-MNHEDLSL 448 (677)
T ss_dssp ------------GSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEE-SSTTHHHH
T ss_pred ------------HCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEE-EecchHHH
Confidence 589999 9999999999 88999999999999999975 54444 44455433
Q ss_pred HH
Q 011428 309 FE 310 (486)
Q Consensus 309 ~~ 310 (486)
+.
T Consensus 449 ~~ 450 (677)
T 3rc3_A 449 LK 450 (677)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 62
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.92 E-value=7.4e-25 Score=237.78 Aligned_cols=225 Identities=12% Similarity=0.082 Sum_probs=141.5
Q ss_pred CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEeeecChhHHHHHH
Q 011428 33 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSATSSSDVDKLKK 112 (486)
Q Consensus 33 ~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~ 112 (486)
...+|+|+||++|..++.............+++|||||||++...+ ...+..++..++ ..++++||||+......-..
T Consensus 273 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~ 350 (590)
T 3h1t_A 273 KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PAFQIGMTATPLREDNRDTY 350 (590)
T ss_dssp SSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TSEEEEEESSCSCTTTHHHH
T ss_pred CCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cceEEEeccccccccchhHH
Confidence 5789999999999887753332223456789999999999987643 355677888887 57899999997754322222
Q ss_pred HhccCCcE------------------EEcCCcCCcccc-cc-------cCcceEEEEEcch-------hhhHHH----HH
Q 011428 113 LILHNPYI------------------LTLPEVGDVKDE-VI-------PKNVQQFWISCSE-------RDKLLY----IL 155 (486)
Q Consensus 113 ~~l~~p~~------------------i~l~~~~~~~~~-~~-------~~~l~q~~i~~~~-------~~k~~~----l~ 155 (486)
.++..++. +.+......... .. ...+......... ..+... +.
T Consensus 351 ~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~ 430 (590)
T 3h1t_A 351 RYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLT 430 (590)
T ss_dssp HHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHH
T ss_pred HHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHH
Confidence 22222221 111000000000 00 0000000000010 112222 22
Q ss_pred HHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCc--------eeecCCCCCHHHHHHHHHHHhcCCCc---EEEEcCCC
Q 011428 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK--------SAILNAELPQNSRLHILEEFNAGLFD---YLIATDDT 224 (486)
Q Consensus 156 ~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~--------~~~lhs~l~~~~R~~i~~~F~~g~~~---iLIaTd~~ 224 (486)
.++......+++||||++++.|..++..|.+.+.. +..+||.++. +|..++++|++|..+ ||||||+.
T Consensus 431 ~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l 509 (590)
T 3h1t_A 431 DFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLL 509 (590)
T ss_dssp HHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTT
T ss_pred HHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChh
Confidence 33443334589999999999999999999887643 6789999875 799999999998866 88899984
Q ss_pred CccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCC
Q 011428 225 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYN 293 (486)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~ 293 (486)
++|||+|+|++||++++|.|...|+||+||+||.+.
T Consensus 510 ---------------------------------~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 510 ---------------------------------TTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp ---------------------------------TTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred ---------------------------------hcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 589999999999999999999999999999999774
No 63
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.92 E-value=5.1e-25 Score=230.29 Aligned_cols=201 Identities=16% Similarity=0.182 Sum_probs=144.8
Q ss_pred CcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC-CCCccEEEEeeecChhHHHHHHH
Q 011428 35 PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI-PRGCQCLLMSATSSSDVDKLKKL 113 (486)
Q Consensus 35 ~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l-p~~~q~il~SATl~~~v~~l~~~ 113 (486)
.-+.+.|.+.+...+... ..+.++++|||||||++ +.++...+..+.... +...|+++||||+++.+..+..
T Consensus 71 ~~~~~~~~~~l~~~l~~~-----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~- 143 (431)
T 2v6i_A 71 EIVDFMCHSTFTMKLLQG-----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP- 143 (431)
T ss_dssp CSEEEEEHHHHHHHHHHT-----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC-
T ss_pred ceEEEEchHHHHHHHhcC-----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC-
Confidence 345566777766655542 45789999999999997 444444555554443 5689999999999975322111
Q ss_pred hccCCcEEEcCCcCCcccccccCcceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceee
Q 011428 114 ILHNPYILTLPEVGDVKDEVIPKNVQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAI 193 (486)
Q Consensus 114 ~l~~p~~i~l~~~~~~~~~~~~~~l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~ 193 (486)
.++.++.+.. ... ..+...++.++... .+++|||||+++.|+.++..|...++++..
T Consensus 144 --~~~~i~~~~~------------------~~~-~~~~~~~~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 144 --SNSPIIDEET------------------RIP-DKAWNSGYEWITEF--DGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp --CSSCCEEEEC------------------CCC-SSCCSSCCHHHHSC--SSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred --CCCceeeccc------------------cCC-HHHHHHHHHHHHcC--CCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 1111111110 001 01111223334332 679999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccE-----
Q 011428 194 LNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHT----- 268 (486)
Q Consensus 194 lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~----- 268 (486)
+||+ +|..+++.|++|.++|||||++. .+|||+| +.+
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~---------------------------------e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDIS---------------------------------EMGANFK-ADRVIDPR 242 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGG---------------------------------GTSCCCC-CSEEEECC
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchH---------------------------------HcCcccC-CcEEEecC
Confidence 9997 57889999999999999999994 5899999 655
Q ss_pred ------------EEEeCCCCChhhHHHhhhhcccCCC-CceEEEEeCc
Q 011428 269 ------------VINFEMPQNAAGYVHRIGRTGRAYN-TGASVSLVSP 303 (486)
Q Consensus 269 ------------VI~~d~P~s~~~yihRiGRtgR~g~-~G~ai~fv~~ 303 (486)
||+++.|.+..+|+||+||+||.|. .|.+++|..+
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~~~ 290 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYSGN 290 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEECSC
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEcCC
Confidence 6889999999999999999999985 6666766643
No 64
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.90 E-value=1.5e-23 Score=239.17 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=118.5
Q ss_pred hhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHH-HcCCceeecCCCCCHHHHHHHHHHHhcCC--CcEEEEcCC
Q 011428 147 ERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE-KFGIKSAILNAELPQNSRLHILEEFNAGL--FDYLIATDD 223 (486)
Q Consensus 147 ~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~-~~gi~~~~lhs~l~~~~R~~i~~~F~~g~--~~iLIaTd~ 223 (486)
...|...+..++.. ...+++||||+++..+..++..|. ..|+++..+||+|++.+|..+++.|+.|. ++|||||++
T Consensus 487 ~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v 565 (968)
T 3dmq_A 487 FDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI 565 (968)
T ss_dssp TSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC
T ss_pred ccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch
Confidence 44578888888876 457899999999999999999999 46999999999999999999999999998 999999988
Q ss_pred CCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCc
Q 011428 224 TQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSP 303 (486)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~ 303 (486)
. ++|||+|++++||+||+|.++..|+||+||+||.|+.|.+++++..
T Consensus 566 ~---------------------------------~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 566 G---------------------------------SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp T---------------------------------TCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred h---------------------------------hcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEec
Confidence 4 5899999999999999999999999999999999999987777655
Q ss_pred chhhHHHHHHHHh
Q 011428 304 DEMKIFEEIKSFV 316 (486)
Q Consensus 304 ~e~~~~~~~~~~l 316 (486)
.+...-+.+.+.+
T Consensus 613 ~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 613 LEKTAQSVLVRWY 625 (968)
T ss_dssp ETTSHHHHHHHHH
T ss_pred CCChHHHHHHHHH
Confidence 5544444455544
No 65
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.89 E-value=4.6e-22 Score=213.70 Aligned_cols=169 Identities=20% Similarity=0.208 Sum_probs=138.8
Q ss_pred cEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcce-EEEEEcchhhhHHHHHHHHHhh-ccCCeEEEEec
Q 011428 95 QCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQ-QFWISCSERDKLLYILTLLKLE-LVQKKALIFTN 172 (486)
Q Consensus 95 q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~-q~~i~~~~~~k~~~l~~llk~~-~~~~k~IIFvn 172 (486)
.+.+||+|+..+..++...|- ..++.++. .... ..+. +..+.++..+|+..+...+... ....++||||+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~--l~vv~IPt-----nkp~-~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~ 482 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYG--MEVVVIPT-----HKPM-IRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTT 482 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSC--CCEEECCC-----SSCC-CCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred HHeEECCCCchHHHHHHHHhC--CeEEEECC-----CCCc-ceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 578999999998888887774 44555543 1111 1222 2456778889999999888754 34678999999
Q ss_pred CHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCcccccccCCCCCccc
Q 011428 173 TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLD 252 (486)
Q Consensus 173 s~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (486)
|+..++.|+..|...|+++.+|||+..+.+|..+.+.|..| .|+||||++
T Consensus 483 S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmA---------------------------- 532 (822)
T 3jux_A 483 SIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMA---------------------------- 532 (822)
T ss_dssp SHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTT----------------------------
T ss_pred CHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchh----------------------------
Confidence 99999999999999999999999997666666666666666 699999995
Q ss_pred ccccccccCccC--------CccEEEEeCCCCChhhHHHhhhhcccCCCCceEEEEeCcchh
Q 011428 253 SEFGVVRGIDFK--------NVHTVINFEMPQNAAGYVHRIGRTGRAYNTGASVSLVSPDEM 306 (486)
Q Consensus 253 ~~~gvsrGID~~--------~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~ai~fv~~~e~ 306 (486)
+||+||+ ++.+|||+++|.|...|+||+|||||+|.+|.+++|++..|.
T Consensus 533 -----gRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 533 -----GRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp -----TTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred -----hCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 6999998 667999999999999999999999999999999999999885
No 66
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.88 E-value=1.7e-21 Score=206.96 Aligned_cols=122 Identities=23% Similarity=0.282 Sum_probs=99.8
Q ss_pred hHHHHHHHHHhhc-cCCeEEEEecCHHHHHHHHHHHHHc-CCceeecCCCCCHHHHHHHHHHHhcC-CCc-EEEEcCCCC
Q 011428 150 KLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKF-GIKSAILNAELPQNSRLHILEEFNAG-LFD-YLIATDDTQ 225 (486)
Q Consensus 150 k~~~l~~llk~~~-~~~k~IIFvns~~~~~~l~~~L~~~-gi~~~~lhs~l~~~~R~~i~~~F~~g-~~~-iLIaTd~~~ 225 (486)
|+..+..++.... ...++||||++++.+..+...|... |+.+..+||+++..+|..+++.|++| ... +|++|+.+
T Consensus 326 K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~- 404 (500)
T 1z63_A 326 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG- 404 (500)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-
T ss_pred hHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccc-
Confidence 4444555554432 3569999999999999999999885 99999999999999999999999998 555 78899884
Q ss_pred ccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceE--EEEeCc
Q 011428 226 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS--VSLVSP 303 (486)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~a--i~fv~~ 303 (486)
++|+|++++++||+||+|+++..|+||+||++|.|+.+.+ +.|++.
T Consensus 405 --------------------------------~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~ 452 (500)
T 1z63_A 405 --------------------------------GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 452 (500)
T ss_dssp ---------------------------------CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEET
T ss_pred --------------------------------cCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeC
Confidence 5799999999999999999999999999999999987665 445555
Q ss_pred c
Q 011428 304 D 304 (486)
Q Consensus 304 ~ 304 (486)
.
T Consensus 453 ~ 453 (500)
T 1z63_A 453 G 453 (500)
T ss_dssp T
T ss_pred C
Confidence 4
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.84 E-value=1.9e-20 Score=212.92 Aligned_cols=244 Identities=14% Similarity=0.151 Sum_probs=158.0
Q ss_pred CCCCHHHHHHHHc-CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEE
Q 011428 20 SSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLL 98 (486)
Q Consensus 20 g~~~~~~q~~~l~-~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il 98 (486)
++.+...+...|. ..++|+|+||++|..++.... ....++...+||+||||++.. ......|...+| +.++++
T Consensus 360 ~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~--~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p-~a~~lg 433 (1038)
T 2w00_A 360 GSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES--DLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFK-RYYQFG 433 (1038)
T ss_dssp SSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC--CCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCS-SEEEEE
T ss_pred cccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc--chhccccccEEEEEccchhcc---hHHHHHHHHhCC-cccEEE
Confidence 3344445555563 579999999999999887542 112345678999999999753 345677888888 589999
Q ss_pred EeeecChhHH-----HHHHHh----------------ccCCcEEEcCCcCC-cc------cccccCcceEEEEEcchhhh
Q 011428 99 MSATSSSDVD-----KLKKLI----------------LHNPYILTLPEVGD-VK------DEVIPKNVQQFWISCSERDK 150 (486)
Q Consensus 99 ~SATl~~~v~-----~l~~~~----------------l~~p~~i~l~~~~~-~~------~~~~~~~l~q~~i~~~~~~k 150 (486)
||||+..... .....| .--|..+....... .. +......+.+..+.. ..++
T Consensus 434 fTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~-~~~r 512 (1038)
T 2w00_A 434 FTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFL-HPMR 512 (1038)
T ss_dssp EESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTT-CHHH
T ss_pred EeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhc-CHHH
Confidence 9999874321 111111 11122221111000 00 000000000000001 1122
Q ss_pred HHHHH-HHHHh---h-------ccCCeEEEEecCHHHHHHHHHHHHHcC------------Cce-eecCCC---------
Q 011428 151 LLYIL-TLLKL---E-------LVQKKALIFTNTIDMAFRLKLFLEKFG------------IKS-AILNAE--------- 197 (486)
Q Consensus 151 ~~~l~-~llk~---~-------~~~~k~IIFvns~~~~~~l~~~L~~~g------------i~~-~~lhs~--------- 197 (486)
...+. .++.. . ....++||||+++..|..++..|...+ +++ +++|++
T Consensus 513 i~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G 592 (1038)
T 2w00_A 513 IQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIG 592 (1038)
T ss_dssp HHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CC
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCcccccccc
Confidence 22222 23321 1 123589999999999999999998765 555 455642
Q ss_pred -C----------CH-----------------------------HHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCC
Q 011428 198 -L----------PQ-----------------------------NSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGH 237 (486)
Q Consensus 198 -l----------~~-----------------------------~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~ 237 (486)
+ ++ +.|..++++|+.|.++|||+||.
T Consensus 593 ~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~-------------- 658 (1038)
T 2w00_A 593 EISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM-------------- 658 (1038)
T ss_dssp CCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST--------------
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch--------------
Confidence 2 22 24888999999999999999999
Q ss_pred cccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCC----ceEEEEeCcc
Q 011428 238 VDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNT----GASVSLVSPD 304 (486)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~----G~ai~fv~~~ 304 (486)
+.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|+...
T Consensus 659 -------------------lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~ 709 (1038)
T 2w00_A 659 -------------------FLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLE 709 (1038)
T ss_dssp -------------------TSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCH
T ss_pred -------------------HHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccH
Confidence 4689999999 789999999999999999999998764 8888888754
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.83 E-value=1.2e-18 Score=190.96 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=103.8
Q ss_pred hHHHHHHHHHhh--ccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCc---EEEEcCCC
Q 011428 150 KLLYILTLLKLE--LVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFD---YLIATDDT 224 (486)
Q Consensus 150 k~~~l~~llk~~--~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~---iLIaTd~~ 224 (486)
|+..+..++... ....++||||+....+..+..+|...|+.++.+||+++..+|..+++.|+.|... +|++|+..
T Consensus 400 K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~ 479 (644)
T 1z3i_X 400 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAG 479 (644)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGS
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccc
Confidence 444444444432 2367999999999999999999999999999999999999999999999998764 88999874
Q ss_pred CccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCce--EEEEeC
Q 011428 225 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA--SVSLVS 302 (486)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~--ai~fv~ 302 (486)
++|||++++++||+||+|+++..|.|++||++|.|+... ++.|++
T Consensus 480 ---------------------------------g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 480 ---------------------------------GCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp ---------------------------------CTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred ---------------------------------cCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 469999999999999999999999999999999997654 455666
Q ss_pred cc
Q 011428 303 PD 304 (486)
Q Consensus 303 ~~ 304 (486)
..
T Consensus 527 ~~ 528 (644)
T 1z3i_X 527 TG 528 (644)
T ss_dssp TT
T ss_pred CC
Confidence 55
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.8e-19 Score=196.46 Aligned_cols=122 Identities=25% Similarity=0.299 Sum_probs=104.2
Q ss_pred hHHHHHHHHHhhc-cCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCC---cEEEEcCCCC
Q 011428 150 KLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLF---DYLIATDDTQ 225 (486)
Q Consensus 150 k~~~l~~llk~~~-~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~---~iLIaTd~~~ 225 (486)
|+..|..++.... ...++||||..+..+..|..+|...|+.++.+||+++..+|..+++.|+.|.. -+|++|+.+
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ag- 635 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAG- 635 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHH-
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccc-
Confidence 5555666665432 24699999999999999999999999999999999999999999999999655 489999874
Q ss_pred ccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCce--EEEEeCc
Q 011428 226 TKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGA--SVSLVSP 303 (486)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~--ai~fv~~ 303 (486)
..|||++.+++||+||+|+++..++||+||+.|.|+... ++.|++.
T Consensus 636 --------------------------------g~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~ 683 (800)
T 3mwy_W 636 --------------------------------GLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSK 683 (800)
T ss_dssp --------------------------------TTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEET
T ss_pred --------------------------------cCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecC
Confidence 469999999999999999999999999999999997554 4556665
Q ss_pred c
Q 011428 304 D 304 (486)
Q Consensus 304 ~ 304 (486)
.
T Consensus 684 ~ 684 (800)
T 3mwy_W 684 D 684 (800)
T ss_dssp T
T ss_pred C
Confidence 5
No 70
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.74 E-value=1.2e-17 Score=163.74 Aligned_cols=127 Identities=22% Similarity=0.287 Sum_probs=98.2
Q ss_pred cchhhhHHHHHHHHHhhc-cCCeEEEEecCHHHHHHHHHHHHH-cCCceeecCCCCCHHHHHHHHHHHhcC-CCc-EEEE
Q 011428 145 CSERDKLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEK-FGIKSAILNAELPQNSRLHILEEFNAG-LFD-YLIA 220 (486)
Q Consensus 145 ~~~~~k~~~l~~llk~~~-~~~k~IIFvns~~~~~~l~~~L~~-~gi~~~~lhs~l~~~~R~~i~~~F~~g-~~~-iLIa 220 (486)
.....|+..|..++.... ...++||||++...+..+...|.. +|+.++.+||++++.+|..+++.|+.| .+. +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 345679999988887543 467999999999999999999988 599999999999999999999999999 777 7888
Q ss_pred cCCCCccccccCCCCCCcccccccCCCCCcccccccccccCccCCccEEEEeCCCCChhhHHHhhhhcccCCCCceE--E
Q 011428 221 TDDTQTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGIDFKNVHTVINFEMPQNAAGYVHRIGRTGRAYNTGAS--V 298 (486)
Q Consensus 221 Td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID~~~V~~VI~~d~P~s~~~yihRiGRtgR~g~~G~a--i 298 (486)
|+.+ ++|||++++++||+||+|+++..|+||+||++|.|+.+.+ +
T Consensus 172 t~~~---------------------------------g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 172 VKAG---------------------------------GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp CCTT---------------------------------CCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred hhhh---------------------------------cCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 8874 5799999999999999999999999999999999987765 5
Q ss_pred EEeCcc
Q 011428 299 SLVSPD 304 (486)
Q Consensus 299 ~fv~~~ 304 (486)
.|++..
T Consensus 219 ~li~~~ 224 (271)
T 1z5z_A 219 KLISVG 224 (271)
T ss_dssp EEEETT
T ss_pred EEeeCC
Confidence 556654
No 71
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.69 E-value=7.8e-17 Score=154.81 Aligned_cols=111 Identities=28% Similarity=0.353 Sum_probs=103.7
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.++++..++|+.+...+...+..+++|+|+||++|.+++..+. ..++++++|||||||+++++||...+..++..+
T Consensus 129 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~----~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~ 204 (242)
T 3fe2_A 129 CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK----TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQI 204 (242)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS----CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTS
T ss_pred cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC----CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhC
Confidence 4789999999999999988888899999999999999998765 678999999999999999999999999999999
Q ss_pred CCCccEEEEeeecChhHHHHHHHhccCCcEEEcCC
Q 011428 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125 (486)
Q Consensus 91 p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 125 (486)
++..|+++||||+|+++..+...++.+|+.+.+..
T Consensus 205 ~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 205 RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp CSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred CccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999998765
No 72
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.67 E-value=9.7e-17 Score=152.47 Aligned_cols=108 Identities=25% Similarity=0.318 Sum_probs=95.0
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
++++..++|+.+...+...+..+++|+|+||+++.+++..+. ..+.++++|||||||++++++|...+..++..++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~----~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~ 196 (228)
T 3iuy_A 121 GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS----VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR 196 (228)
T ss_dssp TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC----CCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC----cCcccceEEEEECHHHHhccchHHHHHHHHHhCC
Confidence 789999999998888888888899999999999999988764 6688999999999999999999999999999999
Q ss_pred CCccEEEEeeecChhHHHHHHHhccCCcEEEc
Q 011428 92 RGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123 (486)
Q Consensus 92 ~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l 123 (486)
+..|+++||||+|+++..+...++.+|+.+.+
T Consensus 197 ~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 197 PDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred cCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 99999999999999999999999999988753
No 73
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.66 E-value=2.7e-16 Score=151.89 Aligned_cols=122 Identities=22% Similarity=0.294 Sum_probs=100.1
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHH-
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV- 89 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~- 89 (486)
.++++..++|+.+...+...+..+++|+|+||++|.+++..+. ..++++++|||||||+++++||..++..++..
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~----~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 202 (253)
T 1wrb_A 127 TPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK----ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES 202 (253)
T ss_dssp SSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS----BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSS
T ss_pred CCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC----CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhc
Confidence 4688999999999888888888899999999999999998765 66889999999999999999999999999995
Q ss_pred -CCC--CccEEEEeeecChhHHHHHHHhccCCcEEEcCCcCCcccccccCcceEE
Q 011428 90 -IPR--GCQCLLMSATSSSDVDKLKKLILHNPYILTLPEVGDVKDEVIPKNVQQF 141 (486)
Q Consensus 90 -lp~--~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~~~~~~~~~~~~~l~q~ 141 (486)
++. ..|+++||||+++++..+...++.+|+.+.+.. ......++.|+
T Consensus 203 ~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~-----~~~~~~~i~q~ 252 (253)
T 1wrb_A 203 NMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR-----VGSTSDSIKQE 252 (253)
T ss_dssp CCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------------
T ss_pred cCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC-----CCCCcCCceec
Confidence 454 789999999999999999999999999998866 33444566664
No 74
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.64 E-value=1.1e-15 Score=142.57 Aligned_cols=106 Identities=33% Similarity=0.429 Sum_probs=98.5
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
++++..++|+.+...+...+..+++|+|+||+++.+++..+. ..+.++++|||||||.+++.+|...+..++..+|
T Consensus 100 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~----~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~ 175 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV----AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 175 (206)
T ss_dssp SCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC----SCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC
T ss_pred CceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC----cCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCC
Confidence 788999999999988888888899999999999999998764 5678999999999999999999999999999999
Q ss_pred CCccEEEEeeecChhHHHHHHHhccCCcEE
Q 011428 92 RGCQCLLMSATSSSDVDKLKKLILHNPYIL 121 (486)
Q Consensus 92 ~~~q~il~SATl~~~v~~l~~~~l~~p~~i 121 (486)
+..|+++||||+|+++..+...++.+|+.+
T Consensus 176 ~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 176 KNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred ccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999999999999876
No 75
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.62 E-value=1e-15 Score=145.76 Aligned_cols=115 Identities=21% Similarity=0.316 Sum_probs=99.6
Q ss_pred HHhhcCCCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCC-cHHHH
Q 011428 5 ELCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYG-YEDDL 83 (486)
Q Consensus 5 ~~~~~~~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g-~~~~l 83 (486)
.++....++++..++|+.+...+...+ .+++|+|+||+++.+++..+. ..+.++++|||||||+++++| |...+
T Consensus 114 ~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~----~~~~~~~~lViDEah~~~~~~~~~~~~ 188 (230)
T 2oxc_A 114 AIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY----LNPGSIRLFILDEADKLLEEGSFQEQI 188 (230)
T ss_dssp HHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS----SCGGGCCEEEESSHHHHHSTTSSHHHH
T ss_pred HHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC----cccccCCEEEeCCchHhhcCcchHHHH
Confidence 333333378999999999888776665 489999999999999998764 567889999999999999998 99999
Q ss_pred HHHHHHCCCCccEEEEeeecChhHHHHHHHhccCCcEEEcC
Q 011428 84 KALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124 (486)
Q Consensus 84 ~~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~ 124 (486)
..++..++...|+++||||+|+++..+...++.+|..+.+.
T Consensus 189 ~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 189 NWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred HHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 99999999999999999999999999999999999988653
No 76
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=147.09 Aligned_cols=111 Identities=32% Similarity=0.465 Sum_probs=100.9
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.++++..++|+.+...+...+..+++|+|+||++|.+++.... ...+.++++|||||||++++++|...+..++..+
T Consensus 138 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~---~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~ 214 (249)
T 3ber_A 138 IGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK---GFNLRALKYLVMDEADRILNMDFETEVDKILKVI 214 (249)
T ss_dssp GTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST---TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSS
T ss_pred CCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC---CcCccccCEEEEcChhhhhccChHHHHHHHHHhC
Confidence 4788999999999988888888999999999999999988632 2567899999999999999999999999999999
Q ss_pred CCCccEEEEeeecChhHHHHHHHhccCCcEEEcC
Q 011428 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124 (486)
Q Consensus 91 p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~ 124 (486)
+...|+++||||++.++..+...++.+|+.+.+.
T Consensus 215 ~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 215 PRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp CSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred CCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999988753
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.62 E-value=4.1e-13 Score=147.17 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=51.2
Q ss_pred cCCCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchH-HHHHHcCCCC--CCcCCC---CcceEEeccccccc
Q 011428 9 GQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCM-PKCLSTGVLQ--SKSFSD---SLKILVLDEADLLL 75 (486)
Q Consensus 9 ~~~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl-~~~l~~~~~~--~~~~l~---~l~~lViDEad~ll 75 (486)
..++++|..++||++...+.. .-++||+||||++| .++|..+... ....+. .+.++||||||.||
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 457899999999998654443 33799999999999 8999876421 124566 89999999999987
No 78
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.62 E-value=4e-16 Score=147.32 Aligned_cols=110 Identities=28% Similarity=0.406 Sum_probs=98.7
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
++.+..++|+.+...+...+..+++|+|+||+++.+++..+. ..+.++++|||||||.+++++|...+..++..++
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~----~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~ 179 (219)
T 1q0u_A 104 MIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA----LDVHTAHILVVDEADLMLDMGFITDVDQIAARMP 179 (219)
T ss_dssp CCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC----CCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC
T ss_pred ceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC----CCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC
Confidence 578889999987776666666789999999999999998764 5678899999999999999999999999999999
Q ss_pred CCccEEEEeeecChhHHHHHHHhccCCcEEEcCC
Q 011428 92 RGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125 (486)
Q Consensus 92 ~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 125 (486)
...|+++||||+|+++..+...++.+|..+.+..
T Consensus 180 ~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 180 KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp TTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 9999999999999999999999999999987654
No 79
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.61 E-value=1.4e-15 Score=141.71 Aligned_cols=108 Identities=35% Similarity=0.477 Sum_probs=98.8
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
++++..++|+.+...+...+..+++|+|+||+++.+++..+. ..+.++++|||||||.+++++|...+..++..++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~----~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~ 173 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV----LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP 173 (207)
T ss_dssp TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS----SCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC
T ss_pred cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC----cchhhceEEEEEChhHhhccchHHHHHHHHHhCC
Confidence 478889999988877777777899999999999999998765 6688999999999999999999999999999999
Q ss_pred CCccEEEEeeecChhHHHHHHHhccCCcEEEc
Q 011428 92 RGCQCLLMSATSSSDVDKLKKLILHNPYILTL 123 (486)
Q Consensus 92 ~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l 123 (486)
...|+++||||+++++..+...++.+|..+.+
T Consensus 174 ~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 174 PSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999999999999999998865
No 80
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.61 E-value=1.9e-15 Score=144.70 Aligned_cols=110 Identities=25% Similarity=0.360 Sum_probs=88.0
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCC-CcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHH
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGP-PDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAV 89 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~-~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~ 89 (486)
.++.+..++|+.+...+...+..+ ++|+|+||++|.+++..+. ..+.++++|||||||.+++++|...+..++..
T Consensus 125 ~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~----~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 200 (237)
T 3bor_A 125 MGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY----LSPKWIKMFVLDEADEMLSRGFKDQIYEIFQK 200 (237)
T ss_dssp TTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS----SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHH
T ss_pred cCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC----cCcccCcEEEECCchHhhccCcHHHHHHHHHh
Confidence 468888899988877776666555 9999999999999998765 56788999999999999999999999999999
Q ss_pred CCCCccEEEEeeecChhHHHHHHHhccCCcEEEcC
Q 011428 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLP 124 (486)
Q Consensus 90 lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~ 124 (486)
++...|+++||||+|+++..+...++.+|+.+.+.
T Consensus 201 ~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 201 LNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp SCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999988654
No 81
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=146.76 Aligned_cols=107 Identities=26% Similarity=0.386 Sum_probs=96.6
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.++.+..++|+.....+...+..+++|||+||+++.+++.... ...+.++++|||||||+++++||...+..++..+
T Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~---~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~ 229 (262)
T 3ly5_A 153 HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP---GFMYKNLQCLVIDEADRILDVGFEEELKQIIKLL 229 (262)
T ss_dssp CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT---TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHS
T ss_pred cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC---CcccccCCEEEEcChHHHhhhhHHHHHHHHHHhC
Confidence 4688899999999988888888889999999999999988653 2567899999999999999999999999999999
Q ss_pred CCCccEEEEeeecChhHHHHHHHhccCCcE
Q 011428 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYI 120 (486)
Q Consensus 91 p~~~q~il~SATl~~~v~~l~~~~l~~p~~ 120 (486)
+...|+++||||+|+++..+.+.++.++.+
T Consensus 230 ~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 230 PTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp CSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred CCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 999999999999999999999999886644
No 82
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=4.8e-15 Score=141.47 Aligned_cols=111 Identities=28% Similarity=0.428 Sum_probs=96.7
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.++++..++|+.+...+...+ .+++|+|+||+++.+++.... ...+.++++|||||||++++++|...+..++..+
T Consensus 124 ~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~ 199 (236)
T 2pl3_A 124 HDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETV---SFHATDLQMLVLDEADRILDMGFADTMNAVIENL 199 (236)
T ss_dssp SSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCS---SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTS
T ss_pred CCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcC---CcccccccEEEEeChHHHhcCCcHHHHHHHHHhC
Confidence 468899999998877666655 589999999999999987642 2557889999999999999999999999999999
Q ss_pred CCCccEEEEeeecChhHHHHHHHhccCCcEEEcCC
Q 011428 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125 (486)
Q Consensus 91 p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 125 (486)
+...|+++||||+++++..+...++.+|..+.+.+
T Consensus 200 ~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 200 PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp CTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred CCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99999999999999999999999999999997754
No 83
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=151.00 Aligned_cols=114 Identities=28% Similarity=0.367 Sum_probs=96.0
Q ss_pred HhhcCCCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccC-CCcHHHHH
Q 011428 6 LCKGQVQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLK 84 (486)
Q Consensus 6 ~~~~~~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~ 84 (486)
++....++.+..++|+.....+. ...++|||+||++|++++.+.. ...++++++|||||||.|++ .||...+.
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~---~~~l~~l~~lVlDEad~l~~~~~~~~~~~ 258 (300)
T 3fmo_B 185 MGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLK---FIDPKKIKVFVLDEADVMIATQGHQDQSI 258 (300)
T ss_dssp HTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTC---CCCGGGCSEEEETTHHHHHHSTTHHHHHH
T ss_pred HHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcC---CCChhhceEEEEeCHHHHhhccCcHHHHH
Confidence 33333368888888877653322 4689999999999999997532 25678999999999999998 79999999
Q ss_pred HHHHHCCCCccEEEEeeecChhHHHHHHHhccCCcEEEcCC
Q 011428 85 ALSAVIPRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125 (486)
Q Consensus 85 ~i~~~lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 125 (486)
.|+..+++.+|+++||||++.++..+...++.+|++|.+..
T Consensus 259 ~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 99999999999999999999999999999999999998753
No 84
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.57 E-value=5.7e-15 Score=139.60 Aligned_cols=110 Identities=25% Similarity=0.409 Sum_probs=89.7
Q ss_pred CCeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 11 VQLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
.++++..++|+.+...+...+.. ++|+|+||+++.+++..+. ..++++++|||||||++++++|...+..++..+
T Consensus 109 ~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~----~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~ 183 (224)
T 1qde_A 109 MDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRR----FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 183 (224)
T ss_dssp SCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTS----SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred cCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCC----cchhhCcEEEEcChhHHhhhhhHHHHHHHHHhC
Confidence 47889999999887776666654 9999999999999998764 667899999999999999999999999999999
Q ss_pred CCCccEEEEeeecChhHHHHHHHhccCCcEEEcCC
Q 011428 91 PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125 (486)
Q Consensus 91 p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 125 (486)
+...|+++||||+++++..+...++.+|+.+.+..
T Consensus 184 ~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 184 PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp CTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred CccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999987754
No 85
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.57 E-value=4.8e-15 Score=139.78 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=95.9
Q ss_pred CeeEEEEeCCCCHHHHHHHHc-CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccC-CCcHHHHHHHHHH
Q 011428 12 QLKVVQLTSSMPASDLRAALA-GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS-YGYEDDLKALSAV 89 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~-~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~-~g~~~~l~~i~~~ 89 (486)
++++..++|+.+...+...+. ..++|+|+||+++.+++..+. ..+.++++|||||||++++ .+|...+..++..
T Consensus 111 ~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~----~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~ 186 (220)
T 1t6n_A 111 NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS----LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRM 186 (220)
T ss_dssp TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS----SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHT
T ss_pred CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC----CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHh
Confidence 789999999998877776665 468999999999999998764 5688999999999999997 4888999999999
Q ss_pred CCCCccEEEEeeecChhHHHHHHHhccCCcEEE
Q 011428 90 IPRGCQCLLMSATSSSDVDKLKKLILHNPYILT 122 (486)
Q Consensus 90 lp~~~q~il~SATl~~~v~~l~~~~l~~p~~i~ 122 (486)
++...|+++||||++.++..+...++.+|+.+.
T Consensus 187 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 187 TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred CCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999999999999999999999999998875
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.44 E-value=5.1e-14 Score=135.07 Aligned_cols=113 Identities=22% Similarity=0.261 Sum_probs=88.6
Q ss_pred CCeeEEEEeCCCCHHHH-HHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccC---CCcHHHHHHH
Q 011428 11 VQLKVVQLTSSMPASDL-RAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLS---YGYEDDLKAL 86 (486)
Q Consensus 11 ~~i~v~~l~g~~~~~~q-~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~---~g~~~~l~~i 86 (486)
.++++..++|+.....+ ......+++|+|+||+++.+++.... ....+.++++|||||||++++ .+|...+..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i 202 (245)
T 3dkp_A 125 TGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDP--PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASI 202 (245)
T ss_dssp SCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSS--CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHH
T ss_pred cCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCC--CCcccccCcEEEEeChHHhcccccccHHHHHHHH
Confidence 35566655554322221 12234678999999999999998753 235688999999999999998 5788999998
Q ss_pred HHHC-CCCccEEEEeeecChhHHHHHHHhccCCcEEEcCC
Q 011428 87 SAVI-PRGCQCLLMSATSSSDVDKLKKLILHNPYILTLPE 125 (486)
Q Consensus 87 ~~~l-p~~~q~il~SATl~~~v~~l~~~~l~~p~~i~l~~ 125 (486)
+..+ +...|+++||||+|+++..+...++.+|+.+.+..
T Consensus 203 ~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 203 FLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp HHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 8776 45789999999999999999999999999998754
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=110.58 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=63.6
Q ss_pred CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccc-cCCCcH-HHHHHHHHHCCCCccEEEEeeecChhHHHH
Q 011428 33 GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLL-LSYGYE-DDLKALSAVIPRGCQCLLMSATSSSDVDKL 110 (486)
Q Consensus 33 ~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~l-l~~g~~-~~l~~i~~~lp~~~q~il~SATl~~~v~~l 110 (486)
..++|+|+|||++++++.. .++++++|||||||.+ ++.+|. ..+..++...| +.|+++||||++.+. +
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~-------~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~--~ 223 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA-------GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSM--F 223 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH-------CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHH--H
T ss_pred CCCeEEEECHHHHHHHHHh-------hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHH--H
Confidence 4588999999999999975 3688999999999986 666666 57777777776 799999999999876 6
Q ss_pred HHHhccCCcE
Q 011428 111 KKLILHNPYI 120 (486)
Q Consensus 111 ~~~~l~~p~~ 120 (486)
...+...|++
T Consensus 224 ~~~~~~~pvi 233 (235)
T 3llm_A 224 CEYFFNCPII 233 (235)
T ss_dssp HHHTTSCCCE
T ss_pred HHHcCCCCEE
Confidence 6666666653
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.99 E-value=1.6e-09 Score=116.12 Aligned_cols=75 Identities=17% Similarity=0.337 Sum_probs=49.8
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEE--EcCCCCccccccCCCCCCccc
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI--ATDDTQTKEKDQSDEGGHVDS 240 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLI--aTd~~~~~~~~~~~~~~~~~~ 240 (486)
.++.+|||++|......++..|.. .. ...++.. .+|..+++.|+.|. .||+ ||+.
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~----------------- 439 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAK----------------- 439 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------------------
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCc-----------------
Confidence 478999999999999999887754 33 3445543 56889999999864 6777 6666
Q ss_pred ccccCCCCCcccccccccccCccCC----ccEEEEeCCCC
Q 011428 241 RKSKKHPKAKLDSEFGVVRGIDFKN----VHTVINFEMPQ 276 (486)
Q Consensus 241 ~~~~~~~~~~~~~~~gvsrGID~~~----V~~VI~~d~P~ 276 (486)
+++|||||+ +++||++++|.
T Consensus 440 ----------------~~EGiD~~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 440 ----------------ESEGVEFREKENLFESLVLAGLPY 463 (540)
T ss_dssp ----------------------------CEEEEEEESCCC
T ss_pred ----------------eecceecCCCcccccEEEEECCCC
Confidence 679999997 89999999984
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.80 E-value=1.3e-09 Score=101.31 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=55.1
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCC--CcCCCCcceEEecccccccCCCcHHHH-HHHHH
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQS--KSFSDSLKILVLDEADLLLSYGYEDDL-KALSA 88 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~--~~~l~~l~~lViDEad~ll~~g~~~~l-~~i~~ 88 (486)
++++..++|+.....+...+...++|+|+||+++..++....... ...+.++++|||||||++.+.++...+ ..++.
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 189 (216)
T ss_dssp TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHH
T ss_pred CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHH
Confidence 677888888765544444444579999999999999988643100 144678999999999999887655443 33332
Q ss_pred HC-------------CCCccEEEEeee
Q 011428 89 VI-------------PRGCQCLLMSAT 102 (486)
Q Consensus 89 ~l-------------p~~~q~il~SAT 102 (486)
.. .+..++++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 22 147899999998
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.57 E-value=5e-06 Score=89.01 Aligned_cols=77 Identities=9% Similarity=0.186 Sum_probs=54.6
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCccccc
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~ 242 (486)
.+|.+|||++|......++. ..+.++.+-..+++ +..+++.|+.+.-.||+||-...
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~----------------- 448 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGK----------------- 448 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCC-----------------
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecce-----------------
Confidence 47899999999999888876 34555544334555 45577788544447999984211
Q ss_pred ccCCCCCcccccccccccCccC-----CccEEEEeCCCC
Q 011428 243 SKKHPKAKLDSEFGVVRGIDFK-----NVHTVINFEMPQ 276 (486)
Q Consensus 243 ~~~~~~~~~~~~~gvsrGID~~-----~V~~VI~~d~P~ 276 (486)
+++||||+ ..++||...+|.
T Consensus 449 --------------~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 449 --------------LAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp --------------SCCSSCCEETTEESEEEEEEESCCC
T ss_pred --------------ecccccccccCCcceeEEEEEcCCC
Confidence 57899999 378899888764
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.35 E-value=6.7e-08 Score=94.40 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=62.2
Q ss_pred CeeEEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCC
Q 011428 12 QLKVVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIP 91 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp 91 (486)
.+.+..++|+..... .....++|+|+||+.+... . ...+.++++|||||||++.+ ..+..++..++
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~ 250 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---P----KEWFSQFGMMMNDECHLATG----KSISSIISGLN 250 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---C----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCT
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---H----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhh
Confidence 345666666543321 1225789999999876432 1 13467889999999999973 47788888887
Q ss_pred CCccEEEEeeecChhHHHHHHH
Q 011428 92 RGCQCLLMSATSSSDVDKLKKL 113 (486)
Q Consensus 92 ~~~q~il~SATl~~~v~~l~~~ 113 (486)
...+++++|||++.....+..+
T Consensus 251 ~~~~~l~lSATp~~~~~~~~~l 272 (282)
T 1rif_A 251 NCMFKFGLSGSLRDGKANIMQY 272 (282)
T ss_dssp TCCEEEEECSSCCTTSTTHHHH
T ss_pred cCCeEEEEeCCCCCcchHHHHH
Confidence 7899999999998765444433
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.07 E-value=5.1e-06 Score=79.07 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=53.3
Q ss_pred Cee-EEEEeCCCCHHHHHHHHcCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHC
Q 011428 12 QLK-VVQLTSSMPASDLRAALAGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVI 90 (486)
Q Consensus 12 ~i~-v~~l~g~~~~~~q~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~l 90 (486)
++. +..++|+.. ..++|+|+||+.+...+.. ....+++|||||||.+.+.+|. .++..+
T Consensus 157 ~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~-------~~~~~~llIiDEaH~l~~~~~~----~i~~~~ 216 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK-------LGNRFMLLIFDEVHHLPAESYV----QIAQMS 216 (237)
T ss_dssp CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH-------HTTTCSEEEEECSSCCCTTTHH----HHHHTC
T ss_pred CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH-------hcccCCEEEEECCccCCChHHH----HHHHhc
Confidence 455 566665542 3679999999998766542 2256899999999999887754 455566
Q ss_pred CCCccEEEEeeecChh
Q 011428 91 PRGCQCLLMSATSSSD 106 (486)
Q Consensus 91 p~~~q~il~SATl~~~ 106 (486)
+ ..+++++|||++..
T Consensus 217 ~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 217 I-APFRLGLTATFERE 231 (237)
T ss_dssp C-CSEEEEEEESCC--
T ss_pred c-CCEEEEEecCCCCC
Confidence 5 67899999998753
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.88 E-value=0.00015 Score=78.51 Aligned_cols=105 Identities=15% Similarity=0.231 Sum_probs=69.0
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCCCccccccCCCCCCccccc
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDTQTKEKDQSDEGGHVDSRK 242 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~~~~~~~~~~~~~~~~~~~ 242 (486)
.+|.++||++|......++..|.. +... ...+++..+|..++++|. +.-.||+|+....
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gs----------------- 505 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGR----------------- 505 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSC-----------------
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCc-----------------
Confidence 378899999999999998887762 2222 445566678999999999 8888999986322
Q ss_pred ccCCCCCcccccccccccCccCC--ccEEEEeCCCCCh-----------------------------hhHHHhhhhcccC
Q 011428 243 SKKHPKAKLDSEFGVVRGIDFKN--VHTVINFEMPQNA-----------------------------AGYVHRIGRTGRA 291 (486)
Q Consensus 243 ~~~~~~~~~~~~~gvsrGID~~~--V~~VI~~d~P~s~-----------------------------~~yihRiGRtgR~ 291 (486)
+++||||++ .++||...+|... ....|-+||.=|.
T Consensus 506 --------------f~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~ 571 (620)
T 4a15_A 506 --------------LSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRS 571 (620)
T ss_dssp --------------C--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCS
T ss_pred --------------eeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccC
Confidence 678999986 5689998877421 1125788999997
Q ss_pred CCCceEEEEeC
Q 011428 292 YNTGASVSLVS 302 (486)
Q Consensus 292 g~~G~ai~fv~ 302 (486)
-..--+++++.
T Consensus 572 ~~D~G~v~llD 582 (620)
T 4a15_A 572 AEDTGACVILD 582 (620)
T ss_dssp TTCCEEEEEEC
T ss_pred CCceEEEEEEc
Confidence 65434444543
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=95.94 E-value=0.062 Score=52.97 Aligned_cols=123 Identities=10% Similarity=0.021 Sum_probs=82.8
Q ss_pred chhhhHHHHHHHHHhhc-cCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCCC
Q 011428 146 SERDKLLYILTLLKLEL-VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDDT 224 (486)
Q Consensus 146 ~~~~k~~~l~~llk~~~-~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~~ 224 (486)
....|+.+|-.+|..-. .+.++|||++......-+..+|...|+..+-+.|..... +... ....+.+.+.|...
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~----~~~~~~i~Lltsag 180 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA----NDFSCTVHLFSSEG 180 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSC
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc----ccCCceEEEEECCC
Confidence 35678988888875433 345999999999999999999999999999999985543 2221 13333443334322
Q ss_pred CccccccCCCCCCcccccccCCCCCcccccccccccCc-----cCCccEEEEeCCCCChhh-HHHhhhhcccCC----CC
Q 011428 225 QTKEKDQSDEGGHVDSRKSKKHPKAKLDSEFGVVRGID-----FKNVHTVINFEMPQNAAG-YVHRIGRTGRAY----NT 294 (486)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvsrGID-----~~~V~~VI~~d~P~s~~~-yihRiGRtgR~g----~~ 294 (486)
. . |++ ....+.||.||.-+++.. .+|.+-|+.|.| +.
T Consensus 181 ~-------------------------------~--gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~ 227 (328)
T 3hgt_A 181 I-------------------------------N--FTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERY 227 (328)
T ss_dssp C-------------------------------C--TTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------
T ss_pred C-------------------------------C--CcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCc
Confidence 1 1 554 678999999999888776 488777777753 45
Q ss_pred ceEEEEeCcchh
Q 011428 295 GASVSLVSPDEM 306 (486)
Q Consensus 295 G~ai~fv~~~e~ 306 (486)
-.++-|++....
T Consensus 228 v~V~RLvt~~Ti 239 (328)
T 3hgt_A 228 APIVRLVAINSI 239 (328)
T ss_dssp CCEEEEEETTSH
T ss_pred ceEEEEeCCCCH
Confidence 567777777654
No 95
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.63 E-value=0.041 Score=60.97 Aligned_cols=71 Identities=17% Similarity=0.101 Sum_probs=57.6
Q ss_pred HHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 153 ~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
++..++..-..+.+++|.++|+.-+...+..+..+ |+++..+||+++..+|..+++.+..|.++|+|+|..
T Consensus 406 all~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 480 (780)
T 1gm5_A 406 AQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA 480 (780)
T ss_dssp HHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT
T ss_pred HHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 33344433233678999999998888777666544 799999999999999999999999999999999975
No 96
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.26 E-value=0.19 Score=50.74 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=56.5
Q ss_pred ccCCeEEEEecCHHHHHHHHHHHHH---cCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 162 LVQKKALIFTNTIDMAFRLKLFLEK---FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 162 ~~~~k~IIFvns~~~~~~l~~~L~~---~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
...+++||.++++.-+..++..+.. .++++..++|+.+..++...++.+..|..+|+|+|+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~ 126 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 126 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHH
Confidence 3467899999999999999999998 4789999999999999999999999999999999975
No 97
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.03 E-value=0.48 Score=54.78 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=56.1
Q ss_pred HHHHhhccCCeEEEEecCHHHHHHHHHHHHH----cCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 156 TLLKLELVQKKALIFTNTIDMAFRLKLFLEK----FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 156 ~llk~~~~~~k~IIFvns~~~~~~l~~~L~~----~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.++.......+++|.|+|..-+...+..+.+ +++.+..+++..+..++..+++.+..|..+|+|+|..
T Consensus 644 aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ 715 (1151)
T 2eyq_A 644 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 715 (1151)
T ss_dssp HHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTH
T ss_pred HHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4444334467899999999988887777753 3688999999999999999999999999999999964
No 98
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.87 E-value=0.78 Score=48.18 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=56.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+.+||.++++.-+......|..+|+.+..+||+.+..++..++..+..|.++|+++|+.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe 124 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPE 124 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 588999999999999999999999999999999999999999999999999999999974
No 99
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.82 E-value=0.57 Score=53.89 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=56.1
Q ss_pred ccCCeEEEEecCHHHHHHHHHHHHH---cCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 162 LVQKKALIFTNTIDMAFRLKLFLEK---FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 162 ~~~~k~IIFvns~~~~~~l~~~L~~---~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
...+++||.+++++-|..++..|.. .++.++.+||+++..+|...++.+..|..+|+|+|+.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~ 183 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 183 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHH
Confidence 3467899999999999999999998 4678999999999999999999999999999999975
No 100
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.61 E-value=0.83 Score=48.82 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=55.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHH--hcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF--NAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F--~~g~~~iLIaTd~ 223 (486)
.+.+||.++++.-+......|..+|+.+..+||+++..++..++..+ ..+.++|+++|+.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 68999999999999999999999999999999999999999998888 5788999999984
No 101
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.65 E-value=2 Score=38.90 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=46.3
Q ss_pred CeEEEEecCHHHHHHHHHHHHHc-----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 165 KKALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 165 ~k~IIFvns~~~~~~l~~~L~~~-----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.++||.|+++.-+..++..+..+ ++.++.++|+.+..... +.+..+..+|+|+|..
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~ 143 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPG 143 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHH
Confidence 48999999999999988888776 78899999999876654 3455677899999964
No 102
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.15 E-value=5.2 Score=37.14 Aligned_cols=56 Identities=29% Similarity=0.351 Sum_probs=43.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|+++.-+..++..+..+ ++.+..++|+.+.......+ .+..+|+|+|..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~ 170 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPG 170 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHH
Confidence 457999999999988888777665 88999999998876544332 356899999964
No 103
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=81.06 E-value=3.6 Score=37.54 Aligned_cols=55 Identities=13% Similarity=0.246 Sum_probs=44.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc-----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~-----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|++++-+..++..+..+ ++.+..++|+.+...+...+ ...+|+|+|..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~ 151 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPG 151 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHH
Confidence 468999999999999998888876 67889999999877654433 35899999975
No 104
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=80.12 E-value=4.2 Score=39.89 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=46.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc-----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~-----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|+++.-+..++..+..+ ++.+..++|+.+...... .+..+..+|+|+|..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~ 137 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPG 137 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHH
Confidence 458999999999999988888776 788999999998766543 445677899999964
No 105
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=78.52 E-value=5.5 Score=36.63 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=44.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|++++-+..++..+..+ ++.+..++|+.+.......+. . ..+|+|+|..
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~ 161 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPG 161 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHH
Confidence 457999999999888877766654 889999999998876655443 2 4799999974
No 106
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.31 E-value=7.9 Score=35.22 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=42.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcC----CceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFG----IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~g----i~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|+++.-+..++..+..++ +.+..++|+.+.......+ +..+|+|+|..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~ 155 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPG 155 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHH
Confidence 5689999999999999988888764 7888899998765544332 46899999964
No 107
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=76.17 E-value=6.5 Score=34.80 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=43.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc-----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~-----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|+++.-+..++..+..+ ++.+..++|+.+....... ..+..+|+|+|..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~ 131 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPG 131 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHH
Confidence 457999999999999888888765 5778889999887654322 2356899999974
No 108
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=75.72 E-value=2.2 Score=45.73 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=31.0
Q ss_pred CcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEeee
Q 011428 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 102 (486)
Q Consensus 62 ~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~SAT 102 (486)
.+++||||||+ |++ ...+..|+..+|.+.|++++.-.
T Consensus 262 ~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEAS-MID---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred CCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEEEEcch
Confidence 57899999999 554 67788999999999999998644
No 109
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.04 E-value=5.6 Score=45.46 Aligned_cols=59 Identities=14% Similarity=0.328 Sum_probs=49.8
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHc----CC----ceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKF----GI----KSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~----gi----~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..+++||.++|+.-|..++..+..+ ++ .+..++|+.+...+....+.+.. .+|+|+|+.
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~ 164 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQ 164 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHH
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHH
Confidence 3578999999999998888887754 56 78999999999988877777777 899999974
No 110
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.50 E-value=15 Score=32.38 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=43.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc--CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~--gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|+++.-+..++..+..+ ++++..++|+.+.......+. ...+|+|+|..
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~ 129 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPG 129 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHH
Confidence 467999999999999999999887 467888899887655443332 25799999964
No 111
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=71.42 E-value=10 Score=34.21 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=40.0
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHc---CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKF---GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~---gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
...++||.|++++-+..++..+..+ ++.+..++|+.+...+... +.. ..+|+|+|..
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~iiv~Tp~ 152 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK-GVDIIIATPG 152 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS-CCSEEEECHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC-CCCEEEECHH
Confidence 3567999999999999999999886 6788888988776544332 333 4899999964
No 112
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=71.41 E-value=4 Score=36.81 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=36.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|+++.-+..++..+..+ ++.+..++|+.+.......+ ...+|+|+|..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~ 140 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----RDAQIVVGTPG 140 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----TTCSEEEECHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----CCCCEEEECHH
Confidence 458999999999998888877765 67888899987765543322 23899999964
No 113
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=71.39 E-value=6.2 Score=40.68 Aligned_cols=56 Identities=16% Similarity=0.238 Sum_probs=43.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++||.|+++.-+......+..+ ++.+..++|+.+...+...+. +..+|+|+|..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 111 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQ 111 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHH
Confidence 678999999999888877777765 899999999997665433222 24789999975
No 114
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=71.25 E-value=7.7 Score=40.06 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=40.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++||.|+++.-+......+..+ ++.+..++|+.+...+...+. ...+|+|+|..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 114 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQ 114 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHH
Confidence 578999999999888888877765 899999999997665433222 13789999975
No 115
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=70.62 E-value=8.8 Score=42.25 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=40.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++||.|+++.-+......+..+ ++.++.++|+.+...+...+. +..+|+|+|..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~ 355 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQ 355 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchH
Confidence 678999999999988887777765 899999999997765433321 35799999965
No 116
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=69.35 E-value=6.3 Score=32.33 Aligned_cols=36 Identities=11% Similarity=0.115 Sum_probs=31.8
Q ss_pred CeEEEEe-cCHHHHHHHHHHHHHcCCceeecCCCCCH
Q 011428 165 KKALIFT-NTIDMAFRLKLFLEKFGIKSAILNAELPQ 200 (486)
Q Consensus 165 ~k~IIFv-ns~~~~~~l~~~L~~~gi~~~~lhs~l~~ 200 (486)
.++|||| .+-.++...+..|...|+++..|.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57788899999999999999999998754
No 117
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=68.20 E-value=8.5 Score=35.18 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=36.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|++++-+..++..+..+ ++.+..++|+.+... ....+..+..+|+|+|..
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~ 158 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPG 158 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHH
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHH
Confidence 468999999999999998888776 466777788765433 234556677899999963
No 118
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=67.63 E-value=19 Score=32.96 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=42.2
Q ss_pred CeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 165 KKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 165 ~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.++||.|++++-+..++..+..+ ++.++.++|+.+.......+ ....+|+|+|..
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~ 159 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPG 159 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHH
Confidence 58999999999999888877765 56788889988765543322 346899999975
No 119
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=67.35 E-value=15 Score=36.56 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=45.3
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHc-CC---ceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKF-GI---KSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~-gi---~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..+++||.|+++.-+......+.++ +. .+..+||+.+...+..... ..+|+|+|..
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~ 110 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQ 110 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHH
Confidence 4679999999999998888888766 66 8899999999887655433 4689999964
No 120
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=66.07 E-value=5.4 Score=38.30 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=38.2
Q ss_pred CeEEEEecCHHHHHHHHHHHHHc-----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 165 KKALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 165 ~k~IIFvns~~~~~~l~~~L~~~-----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.++||.|+|++-|..++..+..+ ++.+..+.++.+..... ....+|+|||..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP~ 219 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTPG 219 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECHH
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECHH
Confidence 37999999999999988888765 35667777765433211 456789999975
No 121
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=65.54 E-value=17 Score=40.16 Aligned_cols=67 Identities=18% Similarity=0.074 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHH----HcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE----KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 151 ~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~----~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
+.+++.++...+....++|.|+|..-|.+.+..+. .+|+.+.++.|+++...|.... ..+|+|+|+.
T Consensus 102 laf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 102 LTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp HHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 33444444333445689999999998877776664 4589999999999987665432 2799999963
No 122
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=65.05 E-value=5.1 Score=36.11 Aligned_cols=56 Identities=18% Similarity=0.071 Sum_probs=40.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc--------CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF--------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~--------gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|++++-+..++..+..+ ++.+..++|+.+....... + .+..+|+|+|..
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp~ 135 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTPG 135 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCHH
Confidence 458999999999998888877665 6788888998765432211 1 235789999964
No 123
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=64.63 E-value=6 Score=31.63 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=32.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~ 199 (486)
..+++|||.+-.++...+..|.+.|+++..|.|++.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 468999999999999999999999999999999864
No 124
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=63.42 E-value=23 Score=39.16 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHH----cCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011428 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEK----FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222 (486)
Q Consensus 151 ~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~----~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd 222 (486)
+.+++-++...+....++|.|+|..-|.+.+..+.. +|+.+.++.|+++...|.... ..+|+++|+
T Consensus 111 laf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 111 LTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp HHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 333333332234456899999999998887776654 589999999999987765442 269999996
No 125
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=63.39 E-value=15 Score=35.90 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=43.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++||.|+++.-+..++..+..+ ++.+..++|+.+.......+. ..+|+|+|..
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~ 147 (394)
T 1fuu_A 89 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPG 147 (394)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHH
Confidence 568999999999988888777654 678899999998776655443 4689999964
No 126
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=63.31 E-value=2.8 Score=38.04 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=42.7
Q ss_pred CCcceEEecccccccCCCc--HHHHHHHHHHCCCCccEEEEeeecChhHHHHHHH
Q 011428 61 DSLKILVLDEADLLLSYGY--EDDLKALSAVIPRGCQCLLMSATSSSDVDKLKKL 113 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~--~~~l~~i~~~lp~~~q~il~SATl~~~v~~l~~~ 113 (486)
...++||+||+-..+.+|+ .+++..++...|...-+|+.+--.|+++.+++.+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~ 173 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADT 173 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSE
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcc
Confidence 6689999999988877775 3678888888888888888888888887666554
No 127
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=62.34 E-value=6.3 Score=30.49 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=31.6
Q ss_pred CeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCC
Q 011428 165 KKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199 (486)
Q Consensus 165 ~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~ 199 (486)
.+++|||.+-.++...+..|.+.|+.+..|.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999999999999999999999888888874
No 128
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.82 E-value=5.3 Score=36.68 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=39.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|++++-+..++..+..+ ++.+..++++.....+ ......+..+|+|+|..
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPN 158 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHH
Confidence 347999999999999998888876 6777777765322211 11223456799999964
No 129
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=60.35 E-value=31 Score=27.74 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=45.8
Q ss_pred EEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEE
Q 011428 167 ALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 219 (486)
Q Consensus 167 ~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLI 219 (486)
.+||....+-...+...+...|+++..|.++....-|..-+++|...-.++--
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrt 57 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRT 57 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceee
Confidence 57888888888888888999999999999999999999999999887666543
No 130
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=59.06 E-value=28 Score=32.91 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=43.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|+++.-+..++..+..+ ++.+..++|+.+....... +. ..+|+|+|..
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~ 114 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPG 114 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHH
Confidence 678999999999998888888754 5788899999987665433 22 3789999964
No 131
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=58.99 E-value=19 Score=33.03 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 148 RDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 148 ~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.-|......++.. . .+++||+|++..-+..+...+..+++. +..++|+.. ...+|+|+|..
T Consensus 119 ~GKT~~a~~~~~~-~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~~ 180 (237)
T 2fz4_A 119 SGKTHVAMAAINE-L-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTYD 180 (237)
T ss_dssp TTHHHHHHHHHHH-S-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEHH
T ss_pred CCHHHHHHHHHHH-c-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeHH
Confidence 3444444333332 2 689999999999999999999889999 888998764 25689999953
No 132
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=58.66 E-value=5.7 Score=35.89 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=24.2
Q ss_pred cceEEecccccccCC---CcH--HHHHHHHHHCCCCccEEEEeee
Q 011428 63 LKILVLDEADLLLSY---GYE--DDLKALSAVIPRGCQCLLMSAT 102 (486)
Q Consensus 63 l~~lViDEad~ll~~---g~~--~~l~~i~~~lp~~~q~il~SAT 102 (486)
-.+|||||||.++.. +.+ ..+..+...-....++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 458999999999532 211 2223333333446788888776
No 133
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=58.50 E-value=6.4 Score=30.87 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~ 199 (486)
..+++|||.+-.++...+..|...|+++..|.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 468999999999999999999999999999988853
No 134
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=58.45 E-value=25 Score=34.42 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=44.8
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..+++||.|+++.-+..++..+..+ +..+..+.|+...... .+.+..+..+|+|+|..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~ 168 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPG 168 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHH
Confidence 3568999999999998888888765 5677778887765443 34556688999999964
No 135
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=58.37 E-value=5.5 Score=31.40 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=32.1
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~ 199 (486)
..++||||.+-.++...+..|...|+++..|.|++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 468999999998999999999999999999998853
No 136
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=58.29 E-value=22 Score=35.76 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=43.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|+|++-+..++..+..+ +++++.++|+.+.......+ ...++|+|+|..
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~ 188 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPG 188 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHH
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChH
Confidence 458999999999999998888876 46788899999876544332 245899999964
No 137
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=57.66 E-value=16 Score=37.00 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=40.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++||.|+++.-+......|..+++. +.++||+.+. ..+|+|+|..
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~ 180 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYD 180 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcH
Confidence 689999999999999999999999999 9999998753 3578888853
No 138
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=57.27 E-value=13 Score=41.81 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=39.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++||.|+++.-+......+..+ ++.+..++|+.+...+...+. +..+|+|+|..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~ 355 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQ 355 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHH
Confidence 568999999999888887777765 899999999987665432221 23789999965
No 139
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=55.87 E-value=6.3 Score=43.08 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=30.4
Q ss_pred CCcEEEECcchH-HHHHHcCCCCC--CcCCCCcceEEeccccccc
Q 011428 34 PPDIVIATPGCM-PKCLSTGVLQS--KSFSDSLKILVLDEADLLL 75 (486)
Q Consensus 34 ~~dIvV~TP~rl-~~~l~~~~~~~--~~~l~~l~~lViDEad~ll 75 (486)
.+||+.+|..-+ .+.|+.+.... ......+.+.||||+|-+|
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 479999999876 45676554221 2234678999999999976
No 140
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=55.82 E-value=24 Score=34.51 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=42.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|+++.-+..++..+..+ ++.+..++|+......... ..+..+|+|+|..
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~ 148 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPG 148 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHH
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchH
Confidence 458999999999988888777765 6788889998876543322 2467899999964
No 141
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=55.22 E-value=16 Score=28.84 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~ 199 (486)
..++||||.+-.++...+..|...|+. +..|.|++.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 467999999999999999999999995 888999864
No 142
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=54.88 E-value=16 Score=32.21 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=37.2
Q ss_pred CCeEEEEecCHHHHHH-HHHHHHHc---CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFR-LKLFLEKF---GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~-l~~~L~~~---gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++||+|++..-+.. +...+..+ ++.+..++|+.+...+...+. +..+|+|+|..
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 5789999999988777 55555554 678889998875443322211 24789999965
No 143
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=54.58 E-value=41 Score=37.47 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=43.9
Q ss_pred ccCCeEEEEecCHHHHHHHHHHHH----HcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 162 LVQKKALIFTNTIDMAFRLKLFLE----KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 162 ~~~~k~IIFvns~~~~~~l~~~L~----~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
+....++|.++|..-|.+.+..+. .+|+.+.++.|+++...|.... ..+|+++|+.
T Consensus 150 L~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpg 209 (922)
T 1nkt_A 150 LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNN 209 (922)
T ss_dssp TTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred HhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECch
Confidence 445689999999998877766664 4599999999999987766543 2699999963
No 144
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=53.88 E-value=38 Score=37.89 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHH----HcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011428 151 LLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLE----KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222 (486)
Q Consensus 151 ~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~----~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd 222 (486)
+.+++.++-..+....++|.++|..-|.+.+..+. .+|+.+.++.|+++...|.... ..+|+++|.
T Consensus 107 Lvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 107 LVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 33334443333445689999999988877766654 4599999999999987776653 268888885
No 145
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=53.78 E-value=28 Score=30.78 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=36.8
Q ss_pred CeeEEEEeCCCCHHHHHHHH----cCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEe
Q 011428 12 QLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l----~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lVi 68 (486)
++.+..+.|+++...+...+ .+..+|+|+| +.+..| +++..+++||.
T Consensus 78 g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G-----ldi~~v~~VI~ 128 (191)
T 2p6n_A 78 GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG-----LDFPAIQHVIN 128 (191)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT-----CCCCCCSEEEE
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC-----CCcccCCEEEE
Confidence 78899999999887766544 3578999999 556666 67788888876
No 146
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=53.52 E-value=30 Score=34.02 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=43.6
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
...++||.|+++.-+..++..+..+ ++.+..++|+.+.......+. . ..+|+|+|..
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~ivv~Tp~ 164 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---Y-GQHVVAGTPG 164 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh---c-CCCEEEcCHH
Confidence 3578999999999999888888765 467888899988766544332 2 4589999964
No 147
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=53.37 E-value=28 Score=34.14 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=42.8
Q ss_pred CeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 165 KKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 165 ~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.++||.|+++.-+..++..+..+ ++.++.++|+.+....... +. ...+|+|+|..
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~I~v~Tp~ 160 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD---LE-RGCHLLVATPG 160 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH---HT-TCCSEEEECHH
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH---hh-CCCCEEEEChH
Confidence 46999999999998888887754 6788999999887655432 22 35799999974
No 148
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=52.89 E-value=58 Score=30.05 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=42.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.++++.-+...+..+..+ ++.+..+.|+........ .+..| .+|+|+|+.
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~ 185 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPG 185 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHC-CSEEEECHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHH
Confidence 567999999999999888888765 567788888887655433 33444 899999964
No 149
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=52.59 E-value=21 Score=38.22 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=42.5
Q ss_pred CeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 165 KKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 165 ~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
+++||.++++.-+......+..+ ++.+..++|+.+...+...+ .. ..+|+|+|..
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~-~~~Iiv~Tp~ 120 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---VE-NNDIIILTPQ 120 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---HH-TCSEEEECHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---cc-CCCEEEECHH
Confidence 78999999999888888888776 78999999998654433222 12 4899999975
No 150
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=52.49 E-value=55 Score=31.12 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++||.|+++.-+..++..+..+ ++.+..++|+.+.......+. ..+|+|+|..
T Consensus 74 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~ 132 (367)
T 1hv8_A 74 GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPG 132 (367)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHH
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHH
Confidence 568999999999988888888764 677888999887765543332 5789999964
No 151
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=51.92 E-value=10 Score=31.10 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=31.2
Q ss_pred CCeEEEEecCHHH--HHHHHHHHHHcCCceeecCCCCC
Q 011428 164 QKKALIFTNTIDM--AFRLKLFLEKFGIKSAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~--~~~l~~~L~~~gi~~~~lhs~l~ 199 (486)
..++||||.+-.+ +...+..|...|+.+..|.|++.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 4679999998777 88999999999999888999864
No 152
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=49.81 E-value=4.9 Score=43.05 Aligned_cols=49 Identities=27% Similarity=0.183 Sum_probs=28.3
Q ss_pred HHHHcCCCcEEEECcchHHHHHHcCCCCCCc-CCCCcceEEecccccccC
Q 011428 28 RAALAGPPDIVIATPGCMPKCLSTGVLQSKS-FSDSLKILVLDEADLLLS 76 (486)
Q Consensus 28 ~~~l~~~~dIvV~TP~rl~~~l~~~~~~~~~-~l~~l~~lViDEad~ll~ 76 (486)
.+.....+||||+...-|++......+.... ....=.++||||||.|.+
T Consensus 169 aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 169 MKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPD 218 (620)
T ss_dssp HHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHH
T ss_pred HHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHH
Confidence 3345568999999976555433211000000 112345899999999865
No 153
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=49.58 E-value=17 Score=28.69 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=32.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCCH
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELPQ 200 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~~ 200 (486)
..+++|||.+-.++...+..|...|+. +..|.|++..
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 568999999988999999999999995 8889998643
No 154
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=48.81 E-value=41 Score=29.78 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=41.7
Q ss_pred cCCeEEEEecC--------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 163 VQKKALIFTNT--------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 163 ~~~k~IIFvns--------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
..|.+|||.|. ...+..|...|+.+|+.+.++ .+++..+-...+.+|...
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHTS
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhhh
Confidence 36789999885 257899999999999998755 579999999999999664
No 155
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=48.74 E-value=84 Score=26.44 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=36.3
Q ss_pred CeeEEEEeCCCCHHHHHHHH----cCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEecc
Q 011428 12 QLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDE 70 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l----~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDE 70 (486)
++.+..++|+++...+...+ .+..+|+|+| +.+..| +++..+++||.-.
T Consensus 59 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~G-----ld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 59 GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAARG-----IDIENISLVINYD 111 (163)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTTT-----CCCSCCSEEEESS
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----ChhhcC-----CchhcCCEEEEeC
Confidence 78999999999887665544 3578999999 334444 6778888888643
No 156
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=47.46 E-value=38 Score=25.22 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=29.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~ 199 (486)
..+++|+|.+-.++...+..|.+.|+. +..+ |++.
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 568999999988999999999999986 5556 6653
No 157
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.00 E-value=9.3 Score=37.08 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=28.1
Q ss_pred CCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEeee
Q 011428 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 102 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~SAT 102 (486)
.+.+++||||+|. ++......+..++...+.+..+|+.|-.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 4567999999999 5544456677777777766666655543
No 158
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=46.29 E-value=16 Score=30.87 Aligned_cols=36 Identities=6% Similarity=0.064 Sum_probs=31.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCC-ceeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGI-KSAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi-~~~~lhs~l~ 199 (486)
..++||||.+-.++...+..|...|+ ++..|.|++.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 46799999998889999999999999 5889999874
No 159
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=46.22 E-value=36 Score=32.18 Aligned_cols=49 Identities=18% Similarity=0.116 Sum_probs=41.5
Q ss_pred cCCeEEEEec---------------------CHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhc
Q 011428 163 VQKKALIFTN---------------------TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212 (486)
Q Consensus 163 ~~~k~IIFvn---------------------s~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~ 212 (486)
.+|-+|||.| +...+..|...|+.+|+.+. .+.+++..+-...+++|..
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 3688999988 44689999999999999975 5567999999999999965
No 160
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=46.12 E-value=13 Score=30.87 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=32.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~ 199 (486)
..++||||.+-.++..++..|...|+. +..|.|++.
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 568999999988999999999999996 899999864
No 161
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=45.53 E-value=12 Score=29.79 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAEL 198 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l 198 (486)
..+++|+|.+-.++...+..|.+.|+.+..|.|++
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 46899999998999999999999999988888875
No 162
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=45.26 E-value=22 Score=32.00 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=35.5
Q ss_pred CeeEEEEeCCCCHHHHHHHH----cCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEe
Q 011428 12 QLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l----~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lVi 68 (486)
++.+..++|+++...+...+ .+..+|+|+| +.+..| +++..+++||.
T Consensus 55 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~G-----idi~~v~~Vi~ 105 (212)
T 3eaq_A 55 GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAARG-----LDIPQVDLVVH 105 (212)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTCS-----SSCCCBSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----ChhhcC-----CCCccCcEEEE
Confidence 78899999999988776555 3578999999 333443 67788888773
No 163
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=44.77 E-value=12 Score=31.67 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=31.6
Q ss_pred CCeEEEEecCH--HHHHHHHHHHHHcCCceeecCCCCC
Q 011428 164 QKKALIFTNTI--DMAFRLKLFLEKFGIKSAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~--~~~~~l~~~L~~~gi~~~~lhs~l~ 199 (486)
..++||||.+- .++...+..|...|+++..|.|++.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 46789999987 5899999999999999999999864
No 164
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=44.46 E-value=7.3 Score=41.87 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=40.3
Q ss_pred CeEEEEecCHHHHHHH-HHHHHHcC---CceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 165 KKALIFTNTIDMAFRL-KLFLEKFG---IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 165 ~k~IIFvns~~~~~~l-~~~L~~~g---i~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
+++||.++++.-+... ...|.+++ +.+..++|+.+...+...+. +..+|+|+|..
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~ 115 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 115 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHH
Confidence 7899999999988888 88887765 79999999987665443322 56899999975
No 165
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=44.14 E-value=19 Score=30.32 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=31.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~ 199 (486)
..++||||.+-.++...+..|...|+. +..|.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 467999999999999999999999995 888999864
No 166
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=44.07 E-value=33 Score=29.21 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=40.1
Q ss_pred CCeEEEEec--------------CHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 164 QKKALIFTN--------------TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 164 ~~k~IIFvn--------------s~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
.|.+|||.| +...+..|...|+++|+.+.+ +.+++..+-...+.+|...
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRN-KNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHHS
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHHh
Confidence 577899877 345789999999999999765 5578999999999999664
No 167
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=43.78 E-value=5.6 Score=33.97 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=30.3
Q ss_pred CCCcceEEecccccccCCCcHHHHHHHHHHCCC-CccEEEEeeec-ChhH---HHHHHHh
Q 011428 60 SDSLKILVLDEADLLLSYGYEDDLKALSAVIPR-GCQCLLMSATS-SSDV---DKLKKLI 114 (486)
Q Consensus 60 l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~-~~q~il~SATl-~~~v---~~l~~~~ 114 (486)
+.+.++|||||++.+.... .+.+..++..+.. +..++++|... |.++ ..+...+
T Consensus 81 ~~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl 139 (149)
T 2kjq_A 81 AFEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRM 139 (149)
T ss_dssp GGGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHG
T ss_pred HhCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHH
Confidence 3457899999999865433 5555555554432 34434555553 3333 4444444
No 168
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=43.74 E-value=1e+02 Score=31.72 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=61.2
Q ss_pred ceEEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcC-CceeecCCC--------CC----HHHHH
Q 011428 138 VQQFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG-IKSAILNAE--------LP----QNSRL 204 (486)
Q Consensus 138 l~q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~g-i~~~~lhs~--------l~----~~~R~ 204 (486)
-.+.+.-+....|..++..++... ++++||.|++...|.+++..|..+. -.+..+-+. -| ...|.
T Consensus 15 ~~~~l~g~~gs~ka~~~a~l~~~~--~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl 92 (483)
T 3hjh_A 15 EQRLLGELTGAACATLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRL 92 (483)
T ss_dssp CEEEEECCCTTHHHHHHHHHHHHS--SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHH
T ss_pred CeEEEeCCCchHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHH
Confidence 345566677788888888887642 6789999999999999999999873 234333221 12 24588
Q ss_pred HHHHHHhcCCCcEEEEcCC
Q 011428 205 HILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 205 ~i~~~F~~g~~~iLIaTd~ 223 (486)
.++..+..+...|+|+|-.
T Consensus 93 ~~l~~L~~~~~~ivv~sv~ 111 (483)
T 3hjh_A 93 STLYQLPTMQRGVLIVPVN 111 (483)
T ss_dssp HHHHHGGGCCSSEEEEEHH
T ss_pred HHHHHHHhCCCCEEEEEHH
Confidence 8999988888889988853
No 169
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=43.44 E-value=39 Score=34.47 Aligned_cols=53 Identities=9% Similarity=0.069 Sum_probs=43.3
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcC----CceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFG----IKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~g----i~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++||.|+++.-+......|+.++ ..+..++|+.+...+ ..+..+|+|+|..
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~ 213 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQ 213 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHH
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHH
Confidence 4599999999999999999998873 367889998876654 4678999999965
No 170
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=43.38 E-value=62 Score=28.09 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=41.4
Q ss_pred cCCeEEEEecC---------------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 163 VQKKALIFTNT---------------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 163 ~~~k~IIFvns---------------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
..|.+|||.|. ...+..|...|+.+|+.+. .+.+++..+-...+.+|...
T Consensus 22 ~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 22 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp SCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred CceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 36788999873 5778999999999999985 56788999999999999654
No 171
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=43.25 E-value=14 Score=30.90 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=31.9
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCC-ceeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGI-KSAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi-~~~~lhs~l~ 199 (486)
..++||||.+-.++...+..|...|+ ++..|.|++.
T Consensus 82 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 82 EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 56899999998899999999999999 5889999964
No 172
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=43.12 E-value=39 Score=30.88 Aligned_cols=56 Identities=14% Similarity=0.266 Sum_probs=29.4
Q ss_pred EEEECcchHHHHHHcCCCCCCcCCCCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEee
Q 011428 37 IVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 101 (486)
Q Consensus 37 IvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~SA 101 (486)
+-+.++..+++.+... ..-...++||||||+.+.. ...+.+..+.. .+.++|+..-
T Consensus 69 ~~~~~~~~i~~~i~~~-----~~~~~~dvViIDEaQ~l~~-~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 69 VEVESAPEILNYIMSN-----SFNDETKVIGIDEVQFFDD-RICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp EEESSTHHHHHHHHST-----TSCTTCCEEEECSGGGSCT-HHHHHHHHHHH---TTCEEEEECC
T ss_pred cccCCHHHHHHHHHHH-----hhCCCCCEEEEecCccCcH-HHHHHHHHHHh---CCCeEEEEec
Confidence 3344444555555532 1224578999999987532 22233333332 3566665543
No 173
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=42.77 E-value=18 Score=34.46 Aligned_cols=49 Identities=16% Similarity=0.090 Sum_probs=43.6
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhc
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~ 212 (486)
..|-+|||.|+-..+..|...|+.+|+.+.+ +.+++..+-...+.+|..
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQK-FLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEEE-EESCBHHHHHHHHHHHHT
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999999999765 567999999999999975
No 174
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=42.76 E-value=14 Score=30.38 Aligned_cols=36 Identities=6% Similarity=-0.020 Sum_probs=31.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~ 199 (486)
..++||||.+-.++...+..|.+.|+. +..|.|++.
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 568999999988999999999999995 888999864
No 175
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=42.44 E-value=7.7 Score=33.22 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=11.5
Q ss_pred cceEEeccccccc
Q 011428 63 LKILVLDEADLLL 75 (486)
Q Consensus 63 l~~lViDEad~ll 75 (486)
-.+|||||+|.+.
T Consensus 116 ~~vl~iDe~~~l~ 128 (187)
T 2p65_A 116 QVVMFIDEIHTVV 128 (187)
T ss_dssp SEEEEETTGGGGS
T ss_pred ceEEEEeCHHHhc
Confidence 4689999999997
No 176
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=42.40 E-value=93 Score=24.70 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=40.8
Q ss_pred hccCCeEEEEe------cCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011428 161 ELVQKKALIFT------NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 220 (486)
Q Consensus 161 ~~~~~k~IIFv------ns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIa 220 (486)
.....+++||. ++.-.|.++..+|.+.|+....++=......+..+.+......+..++-
T Consensus 12 ~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi 77 (111)
T 3zyw_A 12 LTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV 77 (111)
T ss_dssp HHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred HHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE
Confidence 34467899999 5788999999999999998766654445555555444333344555543
No 177
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=42.27 E-value=40 Score=29.52 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=23.2
Q ss_pred CcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEeee
Q 011428 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSAT 102 (486)
Q Consensus 62 ~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~SAT 102 (486)
..++|+|||||.+. .++.+.+..+... +..+++..-+
T Consensus 76 ~~dvviIDE~Q~~~-~~~~~~l~~l~~~---~~~Vi~~Gl~ 112 (184)
T 2orw_A 76 DTRGVFIDEVQFFN-PSLFEVVKDLLDR---GIDVFCAGLD 112 (184)
T ss_dssp TEEEEEECCGGGSC-TTHHHHHHHHHHT---TCEEEEEEES
T ss_pred CCCEEEEECcccCC-HHHHHHHHHHHHC---CCCEEEEeec
Confidence 57899999999863 3355555555443 5665554433
No 178
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=41.60 E-value=30 Score=33.23 Aligned_cols=84 Identities=7% Similarity=0.019 Sum_probs=43.4
Q ss_pred eeEEEEeCCCCH-H-HHHHHHc--------CCCcEEEECcch-------HHHHHHcCCCCCCcCCCCcceEEeccccccc
Q 011428 13 LKVVQLTSSMPA-S-DLRAALA--------GPPDIVIATPGC-------MPKCLSTGVLQSKSFSDSLKILVLDEADLLL 75 (486)
Q Consensus 13 i~v~~l~g~~~~-~-~q~~~l~--------~~~dIvV~TP~r-------l~~~l~~~~~~~~~~l~~l~~lViDEad~ll 75 (486)
..+..++|-... . .-...+. ..||+++-.|+. +.+.+..-. ........+++||||||.|.
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~--~~p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLN--YSPELYTRKYVIVHDCERMT 95 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHT--SCCSSSSSEEEEETTGGGBC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHh--hccccCCceEEEeccHHHhC
Confidence 457777874422 2 1222221 367888877641 233333211 11334568999999999986
Q ss_pred CCCcHHHHHHHHHHCCCCccEEEE
Q 011428 76 SYGYEDDLKALSAVIPRGCQCLLM 99 (486)
Q Consensus 76 ~~g~~~~l~~i~~~lp~~~q~il~ 99 (486)
... .+.+...++.-|...-+|++
T Consensus 96 ~~a-~naLLk~LEep~~~t~fIl~ 118 (305)
T 2gno_A 96 QQA-ANAFLKALEEPPEYAVIVLN 118 (305)
T ss_dssp HHH-HHHTHHHHHSCCTTEEEEEE
T ss_pred HHH-HHHHHHHHhCCCCCeEEEEE
Confidence 433 23344444443444444443
No 179
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=41.46 E-value=23 Score=28.09 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=31.6
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~ 199 (486)
..++||||.+-.++...+..|...|+....|.|++.
T Consensus 56 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 56 DKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 567999999999999999999999986688889874
No 180
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=41.26 E-value=46 Score=29.03 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=44.8
Q ss_pred CCeEEEEecC--------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhc----CCCcEEEEc
Q 011428 164 QKKALIFTNT--------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA----GLFDYLIAT 221 (486)
Q Consensus 164 ~~k~IIFvns--------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~----g~~~iLIaT 221 (486)
.|.+|||.|. ...+..|...|+.+|+.+. .+.+++..+-...+.+|.. ..++.+|+.
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~~dh~~~dc~vv~ 107 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVH-VLCDQTAQEMQEKLQNFAQLPAHRVTDSCIVA 107 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHTCGGGGTSSEEEEE
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHhhhhhhccCCCEEEEE
Confidence 6789999875 3489999999999999875 5678999999999999976 245544443
No 181
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=40.42 E-value=24 Score=30.42 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=35.1
Q ss_pred CeeEEEEeCCCCHHHHHHHH----cCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEe
Q 011428 12 QLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l----~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lVi 68 (486)
++.+..+.|+++...+...+ .+..+|+|+|. .+..| +++..+++||.
T Consensus 58 ~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G-----id~~~~~~Vi~ 108 (175)
T 2rb4_A 58 GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG-----IDVKQVTIVVN 108 (175)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT-----TCCTTEEEEEE
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC-----CCcccCCEEEE
Confidence 78899999999987766544 35789999993 22333 67788888885
No 182
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=40.15 E-value=33 Score=29.16 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=35.4
Q ss_pred CeeEEEEeCCCCHHHHHHHH----cCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEec
Q 011428 12 QLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLD 69 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l----~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViD 69 (486)
++.+..+.|+++...+...+ .+...|+|+|. .+..| +++..+++||.-
T Consensus 54 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-----~d~~~~~~Vi~~ 105 (165)
T 1fuk_A 54 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG-----IDVQQVSLVINY 105 (165)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTT-----CCCCSCSEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcC-----CCcccCCEEEEe
Confidence 78899999999987765544 35789999993 34444 667788888763
No 183
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=40.14 E-value=1.7e+02 Score=31.25 Aligned_cols=82 Identities=9% Similarity=0.035 Sum_probs=57.2
Q ss_pred EEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcC-Cc-eeecC--------------------CC
Q 011428 140 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFG-IK-SAILN--------------------AE 197 (486)
Q Consensus 140 q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~g-i~-~~~lh--------------------s~ 197 (486)
+...-+...-|...+..++... ..++||.+++...|..|+..|..+. -. +..+- ..
T Consensus 31 ~~l~g~tgs~kt~~~a~~~~~~--~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~ 108 (664)
T 1c4o_A 31 VTLLGATGTGKTVTMAKVIEAL--GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKD 108 (664)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCC
T ss_pred EEEEcCCCcHHHHHHHHHHHHh--CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhh
Confidence 3445556667777777666532 5689999999999999999999883 22 33332 22
Q ss_pred CC-----HHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 198 LP-----QNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 198 l~-----~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+ ...|..++..+..+.-.|+|||-.
T Consensus 109 ~~~~~~i~~~R~~~l~~L~~~~~~ivV~s~~ 139 (664)
T 1c4o_A 109 ASINPEIERLRHSTTRSLLTRRDVIVVASVS 139 (664)
T ss_dssp CSCCHHHHHHHHHHHHHHHHCSCEEEEEEGG
T ss_pred cccCHHHHHHHHHHHHHHHhCCCeEEEecHH
Confidence 22 567889999998776667777754
No 184
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=39.74 E-value=25 Score=36.48 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=42.1
Q ss_pred CeEEEEecCHHHHHHHHHHHHHc--------CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 165 KKALIFTNTIDMAFRLKLFLEKF--------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 165 ~k~IIFvns~~~~~~l~~~L~~~--------gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.++||.++++.-+..++..+..+ ++.+..+.|+.+... .+..+..+..+|+|||..
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~ 210 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPG 210 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcH
Confidence 48999999999999988888763 345666777765443 445566667899999975
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=39.24 E-value=30 Score=33.40 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.0
Q ss_pred CCCcceEEecccccccC
Q 011428 60 SDSLKILVLDEADLLLS 76 (486)
Q Consensus 60 l~~l~~lViDEad~ll~ 76 (486)
...-+++||||||.|..
T Consensus 106 ~~~~kvviIdead~l~~ 122 (334)
T 1a5t_A 106 LGGAKVVWVTDAALLTD 122 (334)
T ss_dssp TSSCEEEEESCGGGBCH
T ss_pred cCCcEEEEECchhhcCH
Confidence 45678999999999864
No 186
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=39.19 E-value=1.1e+02 Score=24.04 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=40.3
Q ss_pred ccCCeEEEEec------CHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011428 162 LVQKKALIFTN------TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 220 (486)
Q Consensus 162 ~~~~k~IIFvn------s~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIa 220 (486)
....+++||.. ..-.|.++..+|.+.|+....++=......+..+.+......+..++-
T Consensus 15 i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi 79 (109)
T 3ipz_A 15 VNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI 79 (109)
T ss_dssp HTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred HccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 34678999997 489999999999999998766554334455555544444444555543
No 187
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=39.10 E-value=20 Score=29.74 Aligned_cols=36 Identities=6% Similarity=0.122 Sum_probs=31.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~ 199 (486)
..++||||.+-.++...+..|.+.|+. +..|.|++.
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 467999999989999999999999995 888999864
No 188
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=38.92 E-value=1e+02 Score=23.77 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=40.6
Q ss_pred CCeEEEEe------cCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEE
Q 011428 164 QKKALIFT------NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 219 (486)
Q Consensus 164 ~~k~IIFv------ns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLI 219 (486)
..+++||. +..-.|.++..+|.+.++....++-......+..+.+.+....+..++
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 45788888 567889999999999999877776655566666665555545565554
No 189
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=38.33 E-value=25 Score=36.82 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=41.4
Q ss_pred CeEEEEecCHHHHHHHHHHHHHc--------CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 165 KKALIFTNTIDMAFRLKLFLEKF--------GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 165 ~k~IIFvns~~~~~~l~~~L~~~--------gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.++||.|+++.-+..++..+..+ .+.+..+.|+.+.. ..+..+..+..+|+|||..
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~~~~~IlV~Tp~ 159 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFR---AAMNKMNKLRPNIVIATPG 159 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHH---HHHHHHHHHCCSEEEECHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHH---HHHHHHhcCCCCEEEECHH
Confidence 48999999999999888888764 24566677776544 3445556667899999964
No 190
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=37.45 E-value=77 Score=27.88 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCeEEEEecC-----------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhc
Q 011428 164 QKKALIFTNT-----------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212 (486)
Q Consensus 164 ~~k~IIFvns-----------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~ 212 (486)
.+.+|||.|. ...+..|...|+++|+.+. ++.+++..+-...+++|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 5678999875 4889999999999999976 4567899999999999964
No 191
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=37.37 E-value=62 Score=37.03 Aligned_cols=59 Identities=5% Similarity=-0.095 Sum_probs=45.6
Q ss_pred HHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 011428 153 YILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATD 222 (486)
Q Consensus 153 ~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd 222 (486)
+++.++..-...+++||.++++.-+...+..|......+.+++|+++. .+..+|+|+|+
T Consensus 216 a~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~-----------~~~~~IlV~Tp 274 (1108)
T 3l9o_A 216 AEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTT 274 (1108)
T ss_dssp HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBC-----------CCSCSEEEEEH
T ss_pred HHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCcccc-----------CCCCCEEEeCh
Confidence 334444433346789999999999999999998876689999999873 35688999995
No 192
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=37.09 E-value=29 Score=33.25 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=35.8
Q ss_pred CeeEEEEeCCCCHHHHHHHH----cCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEe
Q 011428 12 QLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l----~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lVi 68 (486)
++.+..++|+++...+...+ .+..+|+|+| +.+..| +++..+.+||.
T Consensus 52 g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~G-----idi~~v~~VI~ 102 (300)
T 3i32_A 52 GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAARG-----LDIPQVDLVVH 102 (300)
T ss_dssp TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTCS-----TTCCCCSEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhcC-----ccccceeEEEE
Confidence 78999999999887776555 3678999999 334443 77788888874
No 193
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=37.08 E-value=72 Score=30.60 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=40.9
Q ss_pred CeEEEEecC-----------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhc
Q 011428 165 KKALIFTNT-----------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212 (486)
Q Consensus 165 ~k~IIFvns-----------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~ 212 (486)
+-+|||+|. ...+..|...|+.+|+.+. .+.+++..+-...+.+|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 569999997 6789999999999999976 5567999999999999964
No 194
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=35.54 E-value=79 Score=26.94 Aligned_cols=65 Identities=17% Similarity=0.007 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhhcc-CCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 150 KLLYILTLLKLELV-QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 150 k~~~l~~llk~~~~-~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
...+.+.++..... +.+++|.|.+.+.+..|-..|-++.-.+.+=|+-.... ......|+|+++.
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~L~~~~ 89 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEG---------PRGGAPVEIAWPQ 89 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCS---------STTCCSEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCC---------CCCCCCEEEeCCC
Confidence 66666777765544 45899999999999999999988876665555421100 0124579999854
No 195
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=35.15 E-value=83 Score=30.32 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=41.5
Q ss_pred CCeEEEEecC-------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 164 QKKALIFTNT-------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 164 ~~k~IIFvns-------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
.+-+|||.|. ...+..|...|+.+|+.+. ++.+++..+-...+++|..-
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 6778999875 7889999999999999975 55689999999999999653
No 196
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=35.15 E-value=33 Score=31.74 Aligned_cols=46 Identities=30% Similarity=0.452 Sum_probs=27.3
Q ss_pred CCcceEEecccccccCCC------cHHHHHHHHHHCC----CCccEEEEeeecChh
Q 011428 61 DSLKILVLDEADLLLSYG------YEDDLKALSAVIP----RGCQCLLMSATSSSD 106 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g------~~~~l~~i~~~lp----~~~q~il~SATl~~~ 106 (486)
....+|+|||+|.++... -...+..+...+. ...+++++.+|-.++
T Consensus 123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 346799999999985321 2333444444443 345676777775443
No 197
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=34.82 E-value=55 Score=28.78 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=39.9
Q ss_pred CCeEEEEecC--------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 164 QKKALIFTNT--------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 164 ~~k~IIFvns--------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
.|.+|||.|. ...+..|...|+.+|+.+.+ +.+++..+-...+.+|...
T Consensus 44 rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v-~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 44 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIV-YNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEE-EESCCHHHHHHHHHHHHTS
T ss_pred ceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHHh
Confidence 5778998763 46789999999999999864 5578999888899999664
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=34.77 E-value=22 Score=34.06 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=23.9
Q ss_pred CcceEEecccccccCC-CcHHHHHHHHHHC-CCCccEEEEeeecC
Q 011428 62 SLKILVLDEADLLLSY-GYEDDLKALSAVI-PRGCQCLLMSATSS 104 (486)
Q Consensus 62 ~l~~lViDEad~ll~~-g~~~~l~~i~~~l-p~~~q~il~SATl~ 104 (486)
+..+|+|||+|.+... .....+..++..+ ..+.++ +++++.+
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~i-ii~~~~~ 141 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQI-ILASDRH 141 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEE-EEEESSC
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeE-EEEecCC
Confidence 3679999999998653 2234444444433 234444 4445533
No 199
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=34.68 E-value=22 Score=31.09 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=25.4
Q ss_pred CCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEe
Q 011428 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~S 100 (486)
..-.+|||||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999998542 2345555666656566555554
No 200
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=34.65 E-value=30 Score=36.48 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=29.2
Q ss_pred CCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEee
Q 011428 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 101 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~SA 101 (486)
...++||||||+.+. ...+..++..++...+++++.-
T Consensus 278 ~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 278 APYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp CSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEEC
T ss_pred ccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEec
Confidence 357899999999764 4677888888988888888743
No 201
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=34.47 E-value=53 Score=37.12 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=40.6
Q ss_pred ccCCeEEEEecCHHHHHHHHHHHHHc--CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 162 LVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 162 ~~~~k~IIFvns~~~~~~l~~~L~~~--gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
...+++||.++++.-+...+..|.+. ++.+..++|+.+. .+..+|+|+|+.
T Consensus 80 ~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~~-----------~~~~~IlV~Tpe 132 (997)
T 4a4z_A 80 RNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQI-----------NPDANCLIMTTE 132 (997)
T ss_dssp HTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCEE-----------CTTSSEEEEEHH
T ss_pred hcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcc-----------CCCCCEEEECHH
Confidence 34678999999999999999999875 6789999999863 345788888853
No 202
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=34.33 E-value=21 Score=31.27 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.9
Q ss_pred CcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEee
Q 011428 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMSA 101 (486)
Q Consensus 62 ~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~SA 101 (486)
.-.++++||.+.-++......+..++..+....|+|++|-
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEe
Confidence 3479999999999987767777777776666778777763
No 203
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=33.66 E-value=16 Score=34.87 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=26.0
Q ss_pred CCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEe
Q 011428 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~S 100 (486)
....+|+|||+|.+........+..++...+.+.++|+.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999999862223455555555555566666643
No 204
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=32.69 E-value=98 Score=29.24 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=41.5
Q ss_pred cCCeEEEEecC--------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 163 VQKKALIFTNT--------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 163 ~~~k~IIFvns--------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
..|-+|||+|. ...+..|...|+.+|+.+.+ +.+++..+-...+++|...
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKC-FNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHHS
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHhh
Confidence 36789999885 36899999999999999764 5689999999999999653
No 205
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=32.52 E-value=39 Score=27.82 Aligned_cols=36 Identities=8% Similarity=0.005 Sum_probs=31.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~ 199 (486)
..++||||.+=.++...+..|.+.|+. +..|.|++.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 468999999988899999999999995 888889874
No 206
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=32.24 E-value=27 Score=32.91 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=11.3
Q ss_pred ceEEecccccccC
Q 011428 64 KILVLDEADLLLS 76 (486)
Q Consensus 64 ~~lViDEad~ll~ 76 (486)
.+|+|||+|.+..
T Consensus 132 ~vl~iDEid~l~~ 144 (309)
T 3syl_A 132 GVLFIDEAYYLYR 144 (309)
T ss_dssp SEEEEETGGGSCC
T ss_pred CEEEEEChhhhcc
Confidence 5999999999863
No 207
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=31.11 E-value=1.9e+02 Score=23.21 Aligned_cols=58 Identities=16% Similarity=0.017 Sum_probs=39.8
Q ss_pred cCCeEEEEecC------HHHHHHHHHHHHHcCCc---eeecCCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011428 163 VQKKALIFTNT------IDMAFRLKLFLEKFGIK---SAILNAELPQNSRLHILEEFNAGLFDYLIA 220 (486)
Q Consensus 163 ~~~k~IIFvns------~~~~~~l~~~L~~~gi~---~~~lhs~l~~~~R~~i~~~F~~g~~~iLIa 220 (486)
...+++||..+ .--|.++..+|.+.|+. ...++-......|..+.+......+..++-
T Consensus 14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI 80 (121)
T 3gx8_A 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYV 80 (121)
T ss_dssp HSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEE
T ss_pred ccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 36789999884 88999999999999988 555554555555555544444444555543
No 208
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=31.02 E-value=30 Score=29.80 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=34.5
Q ss_pred CeeEEEEeCCCCHHHHHHHH----cCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEe
Q 011428 12 QLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l----~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lVi 68 (486)
++.+..+.|+++...+...+ .+...|+|+|.. +..| +++..+++||.
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-----ldi~~~~~Vi~ 105 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FGRG-----MDIERVNIAFN 105 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CSTT-----CCGGGCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hhcC-----cchhhCCEEEE
Confidence 78899999999887665544 357899999942 2233 66777888876
No 209
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=30.97 E-value=28 Score=30.51 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=25.1
Q ss_pred CeeEEEEeCCCCHHHHHHHH----cCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEe
Q 011428 12 QLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l----~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lVi 68 (486)
++.+..+.|+++...+...+ .+...|||+| +.+..| +++..+++||.
T Consensus 70 g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~G-----ldi~~~~~VI~ 120 (185)
T 2jgn_A 70 GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAARG-----LDISNVKHVIN 120 (185)
T ss_dssp TCCEEEEC--------CHHHHHHHHTSSSEEEEE-----C-----------CCCSBSEEEE
T ss_pred CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc-----ChhhcC-----CCcccCCEEEE
Confidence 78899999998776554333 3678999999 334444 66778888776
No 210
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=30.62 E-value=27 Score=30.76 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEe
Q 011428 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~S 100 (486)
..-.+|||||+|.+... ....+..++...+....+|+.|
T Consensus 125 ~~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 34569999999997422 2233334444444444444444
No 211
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=30.61 E-value=93 Score=28.79 Aligned_cols=53 Identities=9% Similarity=0.054 Sum_probs=38.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCC----ceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGI----KSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi----~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++||.|+++.-+......+..++. .+..++++.+... -..+..+|+|+|..
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~ 213 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQ 213 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEchH
Confidence 45999999999999999888888764 4566666654322 11256789999964
No 212
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=30.33 E-value=38 Score=29.98 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=27.3
Q ss_pred CCCcceEEecccccc--cCCCcHHHHHHHHHHCCCCccEEEEeeecC
Q 011428 60 SDSLKILVLDEADLL--LSYGYEDDLKALSAVIPRGCQCLLMSATSS 104 (486)
Q Consensus 60 l~~l~~lViDEad~l--l~~g~~~~l~~i~~~lp~~~q~il~SATl~ 104 (486)
....++||+||+..+ .+..|.+.+..++.. ...+++-++|.|
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 566789999998777 444466666666653 223555577764
No 213
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=29.55 E-value=1.6e+02 Score=22.81 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=40.0
Q ss_pred CCeEEEEec------CHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEE
Q 011428 164 QKKALIFTN------TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 219 (486)
Q Consensus 164 ~~k~IIFvn------s~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLI 219 (486)
..+++||.. +.-.|.++..+|...|+....++=......+..+.+......+.+|+
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~if 75 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLY 75 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 457888876 55689999999999999987777666666666655555444455554
No 214
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=29.04 E-value=1.2e+02 Score=25.24 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=40.3
Q ss_pred CCeEEEEec------CHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEE
Q 011428 164 QKKALIFTN------TIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIA 220 (486)
Q Consensus 164 ~~k~IIFvn------s~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIa 220 (486)
..+++||+. ..-.|.++..+|.+.|+....++=......+..+.+......+..++-
T Consensus 34 ~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI 96 (135)
T 2wci_A 34 ENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWV 96 (135)
T ss_dssp HCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred cCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEE
Confidence 457888876 678899999999999998777765555556665555444445555543
No 215
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=29.02 E-value=39 Score=34.22 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=25.0
Q ss_pred CcceEEecccccccCC-CcHHHHHHHHHHC-CCCccEEEEee
Q 011428 62 SLKILVLDEADLLLSY-GYEDDLKALSAVI-PRGCQCLLMSA 101 (486)
Q Consensus 62 ~l~~lViDEad~ll~~-g~~~~l~~i~~~l-p~~~q~il~SA 101 (486)
...+|+|||+|.+... ...+.+..++..+ ..+.++|+.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 6789999999998764 2344454444443 34556555443
No 216
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=28.79 E-value=62 Score=27.14 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=17.2
Q ss_pred cceEEecccccccC-------CCcHHHHHHHHH
Q 011428 63 LKILVLDEADLLLS-------YGYEDDLKALSA 88 (486)
Q Consensus 63 l~~lViDEad~ll~-------~g~~~~l~~i~~ 88 (486)
-.+|||||+|.+.. ......+..++.
T Consensus 116 ~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~ 148 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKADGAMDAGNMLKPALA 148 (195)
T ss_dssp TEEEEEETGGGGTT------CCCCHHHHHHHHH
T ss_pred CeEEEEeCHHHHhccCcccchHHHHHHHHHhhc
Confidence 45899999999973 334455555443
No 217
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=28.35 E-value=2.4e+02 Score=30.06 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=57.2
Q ss_pred EEEEEcchhhhHHHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCC--ceeecCC--------------------C
Q 011428 140 QFWISCSERDKLLYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGI--KSAILNA--------------------E 197 (486)
Q Consensus 140 q~~i~~~~~~k~~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi--~~~~lhs--------------------~ 197 (486)
+...-+....|...+..++... ++++||.+++...|..|+..|..+.. .+..+-+ .
T Consensus 35 ~~l~g~~gs~k~~~~a~~~~~~--~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~ 112 (661)
T 2d7d_A 35 QTLLGATGTGKTFTVSNLIKEV--NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKD 112 (661)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH--CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCE
T ss_pred EEEECcCCcHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhh
Confidence 3445566677777777666532 56899999999999999999998832 2333321 1
Q ss_pred C--C---HHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 198 L--P---QNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 198 l--~---~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
. + ...|..++..+..+.-.|+|||-.
T Consensus 113 ~~~~~~i~~~Rl~~l~~L~~~~~~ivV~sv~ 143 (661)
T 2d7d_A 113 ASINDEIDKLRHSATSALFERRDVIIIASVS 143 (661)
T ss_dssp EEECHHHHHHHHHHHHHHHHCSCEEEEECGG
T ss_pred cccCHHHHHHHHHHHHHHHhCCCeEEEecHH
Confidence 1 1 567899999997776557777754
No 218
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.25 E-value=49 Score=35.49 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=45.2
Q ss_pred HHHHHhhccCCeEEEEecCHHHHHHHHHHHHH---cCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 155 LTLLKLELVQKKALIFTNTIDMAFRLKLFLEK---FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 155 ~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~---~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
..++..-...+++|+.++++.-+...+..++. +|+++..++|+.....+ ..+..+|+|+|+.
T Consensus 59 l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe 123 (702)
T 2p6r_A 59 MAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSE 123 (702)
T ss_dssp HHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHH
T ss_pred HHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHH
Confidence 33433323368999999999999888887743 47899999998766443 1347899999974
No 219
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=28.03 E-value=25 Score=31.32 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=23.2
Q ss_pred CCcceEEecccccccCCC-cHHHHHHHHHHCC-CCccEEEEeee
Q 011428 61 DSLKILVLDEADLLLSYG-YEDDLKALSAVIP-RGCQCLLMSAT 102 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g-~~~~l~~i~~~lp-~~~q~il~SAT 102 (486)
....+|||||+|.+.... +...+..++.... .....++++++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~ 146 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSAS 146 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEES
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcC
Confidence 445799999999986542 2344444444332 23332444444
No 220
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=27.97 E-value=22 Score=30.60 Aligned_cols=46 Identities=15% Similarity=0.000 Sum_probs=26.8
Q ss_pred CCcceEEecccccc-cCCCcHHHHHHHHHHCC-CCccEEEEeeecChh
Q 011428 61 DSLKILVLDEADLL-LSYGYEDDLKALSAVIP-RGCQCLLMSATSSSD 106 (486)
Q Consensus 61 ~~l~~lViDEad~l-l~~g~~~~l~~i~~~lp-~~~q~il~SATl~~~ 106 (486)
.+.++|||||++.. ++......+..++.... .+..+|+.|-..+.+
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45789999999854 23223455556655543 345555555555544
No 221
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=27.91 E-value=1.1e+02 Score=29.60 Aligned_cols=49 Identities=8% Similarity=0.044 Sum_probs=41.4
Q ss_pred cCCeEEEEecCH------------HHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhc
Q 011428 163 VQKKALIFTNTI------------DMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNA 212 (486)
Q Consensus 163 ~~~k~IIFvns~------------~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~ 212 (486)
..|-+|||.|.. ..+..|...|+.+|+.+. ++.+++..+-...+++|..
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHHHHHHHHH
Confidence 467899998762 789999999999999975 5678999999999999954
No 222
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=27.47 E-value=30 Score=29.45 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=30.2
Q ss_pred CCeEEEEecCH---------HHHHHHHHHHHHcCCceeecCCCC
Q 011428 164 QKKALIFTNTI---------DMAFRLKLFLEKFGIKSAILNAEL 198 (486)
Q Consensus 164 ~~k~IIFvns~---------~~~~~l~~~L~~~gi~~~~lhs~l 198 (486)
..++||||.+- ..+..++..|.+.|+.+..|.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 46899999887 458888999999999999999985
No 223
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=26.33 E-value=2e+02 Score=23.04 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=39.9
Q ss_pred CCeEEEEec------CHHHHHHHHHHHHHcCCc-eeecCCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 011428 164 QKKALIFTN------TIDMAFRLKLFLEKFGIK-SAILNAELPQNSRLHILEEFNAGLFDYLIAT 221 (486)
Q Consensus 164 ~~k~IIFvn------s~~~~~~l~~~L~~~gi~-~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaT 221 (486)
..+++||.. ..-.|.++..+|.+.|+. ...++=......+..+.+......+..++--
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vfI~ 83 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLN 83 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEEET
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEEEC
Confidence 468999988 588999999999999995 6666545555555555444344445555443
No 224
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=26.33 E-value=1.5e+02 Score=27.74 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=41.3
Q ss_pred CCeEEEEecC-------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 164 QKKALIFTNT-------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 164 ~~k~IIFvns-------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
.|-+|||.|. ...+..|...|+.+|+.+. ++.+++..+-...+++|..-
T Consensus 32 rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 32 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 5678898875 7889999999999999975 55689999999999999653
No 225
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=26.12 E-value=48 Score=35.68 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=42.7
Q ss_pred CCeEEEEecCHHHHHHHHHHHHH---cCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEK---FGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~---~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++|+.++++.-+...+..+.. +|+++..++|+.+...+. .+..+|+|+|+.
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe 123 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAE 123 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHH
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHH
Confidence 67999999999999888888753 589999999988765542 246899999974
No 226
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=25.89 E-value=44 Score=32.95 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=24.9
Q ss_pred CcceEEecccccccCC---CcHHHHHHHHHHCCCCccEEEEeee
Q 011428 62 SLKILVLDEADLLLSY---GYEDDLKALSAVIPRGCQCLLMSAT 102 (486)
Q Consensus 62 ~l~~lViDEad~ll~~---g~~~~l~~i~~~lp~~~q~il~SAT 102 (486)
.-.++||||||.++.. .+.+.+..+++...+ .-+.++-||
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~t 304 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVIS 304 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEE
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEc
Confidence 4578999999999963 244556666665543 233334444
No 227
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=31.45 E-value=15 Score=31.69 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=32.5
Q ss_pred CeeEEEEeCCCCHHHHHHHHc----CCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEe
Q 011428 12 QLKVVQLTSSMPASDLRAALA----GPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVL 68 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l~----~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lVi 68 (486)
++.+..+.|+++...+...+. +...|||+| +.+..| +++..+++||.
T Consensus 54 ~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~G-----id~~~~~~Vi~ 104 (170)
T 2yjt_D 54 GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAARG-----IDIPDVSHVFN 104 (170)
Confidence 678888999887766554443 467899999 344444 56667777765
No 228
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=25.53 E-value=87 Score=29.24 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=40.1
Q ss_pred CCeEEEEecC-------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 164 QKKALIFTNT-------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 164 ~~k~IIFvns-------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
.|-+|||.|. ...+..|...|+.+|+.+. .+.+++..+-...+.+|..-
T Consensus 20 rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 20 RGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVT-VYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp EEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEE-EEEECSHHHHHHHHHHHHTS
T ss_pred ccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 4668888773 3678999999999999975 55689999999999999753
No 229
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=25.22 E-value=36 Score=32.90 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=19.7
Q ss_pred cceEEecccccccCCC-cHHHHHHHHHHC
Q 011428 63 LKILVLDEADLLLSYG-YEDDLKALSAVI 90 (486)
Q Consensus 63 l~~lViDEad~ll~~g-~~~~l~~i~~~l 90 (486)
-.+|||||+|.+.... ..+.+..++...
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 4589999999997652 355666666654
No 230
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=25.16 E-value=31 Score=32.02 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=11.3
Q ss_pred cceEEeccccccc
Q 011428 63 LKILVLDEADLLL 75 (486)
Q Consensus 63 l~~lViDEad~ll 75 (486)
-.+|+|||+|.+.
T Consensus 111 ~~vl~iDEid~l~ 123 (285)
T 3h4m_A 111 PSIIFIDEIDAIA 123 (285)
T ss_dssp SEEEEEETTHHHH
T ss_pred CeEEEEECHHHhc
Confidence 4689999999986
No 231
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=25.12 E-value=75 Score=32.13 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=27.8
Q ss_pred CCCCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEe
Q 011428 59 FSDSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 59 ~l~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~S 100 (486)
.+...++||||||+.+. ...+..++..++...+++++.
T Consensus 125 ~~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 125 DLAKCRVLICDEVSMYD----RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp CCSSCSEEEESCGGGCC----HHHHHHHHHHSCTTCEEEEEE
T ss_pred cccCCCEEEEECchhCC----HHHHHHHHHhccCCCEEEEEC
Confidence 34568999999999753 456677777887666766664
No 232
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=25.09 E-value=36 Score=32.07 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=25.0
Q ss_pred CCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEe
Q 011428 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~S 100 (486)
..-.+|||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999998542 2344555566656556555543
No 233
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=24.95 E-value=43 Score=32.47 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=25.5
Q ss_pred CCcceEEecccccccCCCcHHHHHHHHHHC--C-CCccEEEEeeecC
Q 011428 61 DSLKILVLDEADLLLSYGYEDDLKALSAVI--P-RGCQCLLMSATSS 104 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~~~~l~~i~~~l--p-~~~q~il~SATl~ 104 (486)
...-+|||||+|.+. + .+.+..++.+. + ...-+|+.++|+.
T Consensus 131 ~~~~ii~lDE~d~l~--~-q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLL--S-EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSC--C-THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhh--c-chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 345689999999998 2 34455555432 2 2345666777763
No 234
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.61 E-value=42 Score=32.06 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=25.1
Q ss_pred CCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEe
Q 011428 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~S 100 (486)
....+|+|||+|.+... ....+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 34579999999998642 2345555666666555555544
No 235
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=24.13 E-value=70 Score=31.02 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=37.4
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHc-----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~-----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
.+++||.|+++.-+..++..+.++ ++.+....++..... ......+|+|+|..
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~ 152 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPG 152 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECch
Confidence 348999999999999998888775 355666666543321 12445789999964
No 236
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=23.78 E-value=88 Score=31.46 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=33.2
Q ss_pred eEEEEecCHHHHHHHHHHHHHc-----CCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 166 KALIFTNTIDMAFRLKLFLEKF-----GIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 166 k~IIFvns~~~~~~l~~~L~~~-----gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
++||.|+++.-+..++..+..+ ++.+.+..++..... ......+|+|+|..
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Ivv~Tp~ 219 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPG 219 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHH
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-------cccCCCCEEEECch
Confidence 7999999999998887777654 344444444332211 11335689999975
No 237
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=23.74 E-value=1.4e+02 Score=27.91 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=41.2
Q ss_pred cCCeEEEEecC--------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 163 VQKKALIFTNT--------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 163 ~~~k~IIFvns--------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
.+|-+|||.|. ...+..|...|+.+|+.+. ++.+++..+-...+++|..-
T Consensus 20 ~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 83 (277)
T 1nw9_B 20 PCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVE-VKGDLTAKKMVLALLELARQ 83 (277)
T ss_dssp SCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred cccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EEcCCCHHHHHHHHHHHHHh
Confidence 35789999876 3489999999999999975 56789999999999999653
No 238
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=23.61 E-value=1.2e+02 Score=28.16 Aligned_cols=49 Identities=10% Similarity=0.132 Sum_probs=40.7
Q ss_pred CCeEEEEecC--------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 164 QKKALIFTNT--------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 164 ~~k~IIFvns--------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
.|-+|||.|. ...+..|...|+++|+.+. .+.+++..+-...+++|...
T Consensus 16 rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred ccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 4678898873 3489999999999999975 56789999999999999764
No 239
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.57 E-value=30 Score=32.55 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=24.3
Q ss_pred CcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEe
Q 011428 62 SLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 62 ~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~S 100 (486)
.-.+|||||+|.+.... .+.+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47799999999986422 333455555555566666554
No 240
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.50 E-value=47 Score=31.97 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=26.3
Q ss_pred CCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEe
Q 011428 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~S 100 (486)
...+++||||+|.+... -.+.+..+++..|....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999988542 2455666667666666665543
No 241
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=23.15 E-value=56 Score=31.40 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=28.0
Q ss_pred CCCCcceEEeccccc-ccCCCcHHHHHHHHHHCCCCccEEEEeeec
Q 011428 59 FSDSLKILVLDEADL-LLSYGYEDDLKALSAVIPRGCQCLLMSATS 103 (486)
Q Consensus 59 ~l~~l~~lViDEad~-ll~~g~~~~l~~i~~~lp~~~q~il~SATl 103 (486)
.+..-+++||||+|. +.. ...+.+...++..|.+.-+|+.+.++
T Consensus 73 lf~~~kvvii~~~~~kl~~-~~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNA-AINEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp HCCSCEEEEEECCSSCCCT-THHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred CccCCeEEEEECCCCCCCh-HHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 356788999999998 643 33455556666555555555554443
No 242
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=23.00 E-value=2.8e+02 Score=26.24 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=38.8
Q ss_pred CeeEEEEeCCCCHHHHHHHH----cCCCcEEEECcchHHHHHHcCCCCCCcCCCCcceEEeccccc
Q 011428 12 QLKVVQLTSSMPASDLRAAL----AGPPDIVIATPGCMPKCLSTGVLQSKSFSDSLKILVLDEADL 73 (486)
Q Consensus 12 ~i~v~~l~g~~~~~~q~~~l----~~~~dIvV~TP~rl~~~l~~~~~~~~~~l~~l~~lViDEad~ 73 (486)
++.+..+.|+++...+...+ .+..+|||+|. .+..| +++..+++||.-....
T Consensus 267 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-----idip~~~~Vi~~~~p~ 322 (395)
T 3pey_A 267 GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG-----IDIPTVSMVVNYDLPT 322 (395)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS-----CCCTTEEEEEESSCCB
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC-----CCcccCCEEEEcCCCC
Confidence 68899999999987766554 35789999993 34444 7788899998755543
No 243
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=22.06 E-value=92 Score=28.96 Aligned_cols=36 Identities=8% Similarity=0.171 Sum_probs=31.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHH-HcCC-ceeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLE-KFGI-KSAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~-~~gi-~~~~lhs~l~ 199 (486)
..++||||.+-.++...+..|. ..|+ ++..|.|++.
T Consensus 233 ~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 233 DKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 4679999999889999999998 8999 5889999863
No 244
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=22.03 E-value=88 Score=29.51 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=24.4
Q ss_pred ceEEecccccccC---CCcHHHHHHHHHHCCCCccEEEEe
Q 011428 64 KILVLDEADLLLS---YGYEDDLKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 64 ~~lViDEad~ll~---~g~~~~l~~i~~~lp~~~q~il~S 100 (486)
-+|||||+|.+.. ..+...+..+....+ ...+++.+
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 4899999999874 456677777776654 44444443
No 245
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=21.96 E-value=67 Score=29.89 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=32.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCCH
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELPQ 200 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~~ 200 (486)
..++||||.+=.++...+..|...|+. +..|.|++..
T Consensus 230 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 230 DKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 468999999988899999999999994 8899999864
No 246
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=21.96 E-value=1.3e+02 Score=32.75 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=40.3
Q ss_pred HHHhhccCCeEEEEecCHHHHHHHHHHHHHc--CCceeecCCCCCHHHHHHHHHHH--------hcCCCcEEEEcCC
Q 011428 157 LLKLELVQKKALIFTNTIDMAFRLKLFLEKF--GIKSAILNAELPQNSRLHILEEF--------NAGLFDYLIATDD 223 (486)
Q Consensus 157 llk~~~~~~k~IIFvns~~~~~~l~~~L~~~--gi~~~~lhs~l~~~~R~~i~~~F--------~~g~~~iLIaTd~ 223 (486)
++......+++||.|+. ..+......+..+ +..+.++||...........+.+ ..+.++|+|+|-.
T Consensus 279 l~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~ 354 (800)
T 3mwy_W 279 LIFARRQNGPHIIVVPL-STMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYE 354 (800)
T ss_dssp HHHHHSCCSCEEEECCT-TTHHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTT
T ss_pred HHHhcCCCCCEEEEECc-hHHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHH
Confidence 33344457899999994 4444455555554 57788888876544332222211 2356889999965
No 247
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=21.66 E-value=99 Score=25.35 Aligned_cols=39 Identities=15% Similarity=0.029 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHH
Q 011428 172 NTIDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEF 210 (486)
Q Consensus 172 ns~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F 210 (486)
.+...|.++..+|...|+....++=.+....|..+.+..
T Consensus 14 ~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 14 AIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 345778999999999999998888888999999988887
No 248
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=21.43 E-value=1.6e+02 Score=27.76 Aligned_cols=49 Identities=10% Similarity=0.132 Sum_probs=40.3
Q ss_pred CCeEEEEecC--------------HHHHHHHHHHHHHcCCceeecCCCCCHHHHHHHHHHHhcC
Q 011428 164 QKKALIFTNT--------------IDMAFRLKLFLEKFGIKSAILNAELPQNSRLHILEEFNAG 213 (486)
Q Consensus 164 ~~k~IIFvns--------------~~~~~~l~~~L~~~gi~~~~lhs~l~~~~R~~i~~~F~~g 213 (486)
.|-+|||.|. ...+..|...|+.+|+.+. .+.+++..+-...+.+|..-
T Consensus 44 rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 44 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 5678898653 4589999999999999975 56679999999999999763
No 249
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=21.30 E-value=2e+02 Score=21.28 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=14.0
Q ss_pred eEEEEecCHHHHHHHHHHHHHcCCcee
Q 011428 166 KALIFTNTIDMAFRLKLFLEKFGIKSA 192 (486)
Q Consensus 166 k~IIFvns~~~~~~l~~~L~~~gi~~~ 192 (486)
+++|+-++......+...|+..|+.+.
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~ 29 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVI 29 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEE
Confidence 344555555555555555555555443
No 250
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=20.86 E-value=99 Score=25.88 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=46.7
Q ss_pred EEEcchhhhHHHHHHHHHhhcc-CCeEEEEecCHHHHHHHHHHHHH-cCCceeecCCCCCHHHHHHHHHHHhcCCCcEEE
Q 011428 142 WISCSERDKLLYILTLLKLELV-QKKALIFTNTIDMAFRLKLFLEK-FGIKSAILNAELPQNSRLHILEEFNAGLFDYLI 219 (486)
Q Consensus 142 ~i~~~~~~k~~~l~~llk~~~~-~~k~IIFvns~~~~~~l~~~L~~-~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLI 219 (486)
-+.+.+.+|..++...-+.... .|-.|+ .|.-++ .+|++ .|+.+-.+++. +..-+.++.+...+|+++++|
T Consensus 7 alsv~D~dK~~~v~~a~~~~~ll~Gf~l~--AT~gTa----~~L~e~~Gl~v~~v~k~-~~eG~p~I~d~I~~geIdlVI 79 (134)
T 2xw6_A 7 ALIAHDAKKEEMVAFCQRHREVLARFPLV--ATGTTG----RRIEEATGLTVEKLLSG-PLGGDQQMGARVAEGRILAVI 79 (134)
T ss_dssp EEEECGGGHHHHHHHHHHTHHHHTTSCEE--ECHHHH----HHHHHHHCCCCEECSCG-GGTHHHHHHHHHHTTCEEEEE
T ss_pred EEEEecccHHHHHHHHHHHHHHhCCCEEE--EccHHH----HHHHHhhCceEEEEEec-CCCCcchHHHHHHCCCccEEE
Confidence 3455666776555433322211 132333 444444 44555 79999888743 324578999999999999999
Q ss_pred EcCC
Q 011428 220 ATDD 223 (486)
Q Consensus 220 aTd~ 223 (486)
-|..
T Consensus 80 nt~~ 83 (134)
T 2xw6_A 80 FFRD 83 (134)
T ss_dssp EECC
T ss_pred EccC
Confidence 9975
No 251
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.81 E-value=1e+02 Score=33.05 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=41.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHH---HcCCceeecCCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLE---KFGIKSAILNAELPQNSRLHILEEFNAGLFDYLIATDD 223 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~---~~gi~~~~lhs~l~~~~R~~i~~~F~~g~~~iLIaTd~ 223 (486)
++++|+.++++.-+...+..++ .+|+.+..++|+.....+. .+..+|+|+|+.
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe 130 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAW-------LKNYDIIITTYE 130 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGG-------GGGCSEEEECHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhh-------cCCCCEEEEcHH
Confidence 6799999999988888887764 3588999999988765431 236899999973
No 252
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=20.69 E-value=53 Score=31.62 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=22.3
Q ss_pred CCcceEEecccccccCCCcHHHHHHHHHHCCCCccEEEEe
Q 011428 61 DSLKILVLDEADLLLSYGYEDDLKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 61 ~~l~~lViDEad~ll~~g~~~~l~~i~~~lp~~~q~il~S 100 (486)
..-.+|||||+|.+.... ...+..++...|....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 446799999999985322 233444444444444444443
No 253
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=20.60 E-value=96 Score=29.49 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=23.7
Q ss_pred cceEEecccccccCCC-------cHHHHHHHHHHC----CCCccEEEEeeecC
Q 011428 63 LKILVLDEADLLLSYG-------YEDDLKALSAVI----PRGCQCLLMSATSS 104 (486)
Q Consensus 63 l~~lViDEad~ll~~g-------~~~~l~~i~~~l----p~~~q~il~SATl~ 104 (486)
-.+|+|||+|.+.... .......++..+ .....++++.||-.
T Consensus 111 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 111 PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 4699999999987522 222233333332 23445666666643
No 254
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.59 E-value=35 Score=33.08 Aligned_cols=35 Identities=29% Similarity=0.269 Sum_probs=21.3
Q ss_pred eEEecccccccCCCcHHH-HHHHHHHCCCCccEEEEe
Q 011428 65 ILVLDEADLLLSYGYEDD-LKALSAVIPRGCQCLLMS 100 (486)
Q Consensus 65 ~lViDEad~ll~~g~~~~-l~~i~~~lp~~~q~il~S 100 (486)
+|||||+|.+......+. +..++... ....+|+.|
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t 171 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMIS 171 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEEC
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEE
Confidence 999999999876532344 55555544 334444443
No 255
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=20.47 E-value=57 Score=30.72 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=33.2
Q ss_pred cCCeEEEEecCHHHHHHHHHHHHHcCC-ceeecCCCCCH
Q 011428 163 VQKKALIFTNTIDMAFRLKLFLEKFGI-KSAILNAELPQ 200 (486)
Q Consensus 163 ~~~k~IIFvns~~~~~~l~~~L~~~gi-~~~~lhs~l~~ 200 (486)
...++++||.+-.+|...+..|.+.|+ ++..|.|++..
T Consensus 180 kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~a 218 (265)
T 4f67_A 180 KDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILN 218 (265)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 357899999999999999999999999 58889998753
No 256
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=20.37 E-value=66 Score=29.01 Aligned_cols=36 Identities=6% Similarity=0.110 Sum_probs=31.5
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCceeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIKSAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~~~~lhs~l~ 199 (486)
..++|+||++=.++...+..|...|.++..|.|++.
T Consensus 184 ~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 184 GQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 467999999999999999999999977888998864
No 257
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=20.36 E-value=80 Score=29.13 Aligned_cols=36 Identities=11% Similarity=-0.005 Sum_probs=31.2
Q ss_pred CCeEEEEecCHHHHHHHHHHHHHcCCc-eeecCCCCC
Q 011428 164 QKKALIFTNTIDMAFRLKLFLEKFGIK-SAILNAELP 199 (486)
Q Consensus 164 ~~k~IIFvns~~~~~~l~~~L~~~gi~-~~~lhs~l~ 199 (486)
..++||||.+-.++...+..|...|+. +..|.|++.
T Consensus 223 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 223 DKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 468999999988899999999999995 888988763
No 258
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=20.35 E-value=73 Score=26.25 Aligned_cols=39 Identities=3% Similarity=-0.031 Sum_probs=21.1
Q ss_pred ceEEecccccccCCCcHHHHHHHHHH-CCCCccEEEEeeec
Q 011428 64 KILVLDEADLLLSYGYEDDLKALSAV-IPRGCQCLLMSATS 103 (486)
Q Consensus 64 ~~lViDEad~ll~~g~~~~l~~i~~~-lp~~~q~il~SATl 103 (486)
..|+|||+|.+.... ...+..++.. .+.+..+|+.|..-
T Consensus 77 ~~l~lDei~~l~~~~-q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 77 GVLYVGDIAQYSRNI-QTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp SEEEEEECTTCCHHH-HHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CeEEEeChHHCCHHH-HHHHHHHHHhCCCCCEEEEEecCCC
Confidence 589999999885322 2223333332 23445555555443
No 259
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=20.34 E-value=29 Score=35.82 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=31.4
Q ss_pred HHHHHHHHhhccCCeEEEEecCHHHHHHHHHHHHHcCCceeec
Q 011428 152 LYILTLLKLELVQKKALIFTNTIDMAFRLKLFLEKFGIKSAIL 194 (486)
Q Consensus 152 ~~l~~llk~~~~~~k~IIFvns~~~~~~l~~~L~~~gi~~~~l 194 (486)
..|..+++. .+.++||.|.|..++.+|...|...|+.+...
T Consensus 372 ~~L~~~~~~--~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~ 412 (483)
T 3hjh_A 372 DALRKFLET--FDGPVVFSVESEGRREALGELLARIKIAPQRI 412 (483)
T ss_dssp HHHHHHHHH--CCSCEEEEESCSSTTTTTHHHHGGGTCCCEEC
T ss_pred HHHHHHHHh--CCCeEEEEeCChHHHHHHHHHHHHcCCCceec
Confidence 444444432 25689999999999999999999999876544
Done!