Query 011429
Match_columns 486
No_of_seqs 227 out of 1629
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 01:16:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10948 cysteine desulfurase 100.0 1.3E-86 2.8E-91 697.4 50.1 390 75-481 28-422 (424)
2 TIGR01980 sufB FeS assembly pr 100.0 6.3E-87 1.4E-91 705.8 47.5 388 69-467 35-442 (448)
3 CHL00085 ycf24 putative ABC tr 100.0 2.4E-86 5.2E-91 706.4 48.2 400 69-479 51-481 (485)
4 PRK11814 cysteine desulfurase 100.0 2.9E-86 6.2E-91 705.4 48.6 399 69-479 50-482 (486)
5 TIGR01981 sufD FeS assembly pr 100.0 2.8E-81 6.1E-86 649.2 44.1 362 89-470 1-366 (366)
6 COG0719 SufB Cysteine desulfur 100.0 3E-74 6.5E-79 604.1 40.9 397 69-477 11-410 (412)
7 PF01458 UPF0051: Uncharacteri 100.0 1.3E-57 2.8E-62 444.2 33.1 227 225-453 3-229 (229)
8 PF01458 UPF0051: Uncharacteri 98.5 0.00027 5.9E-09 69.0 27.5 177 193-382 9-190 (229)
9 CHL00085 ycf24 putative ABC tr 97.8 0.0098 2.1E-07 64.6 26.0 179 228-413 193-384 (485)
10 PRK10948 cysteine desulfurase 97.8 0.018 3.8E-07 61.6 26.8 178 191-380 172-353 (424)
11 PRK11814 cysteine desulfurase 97.7 0.014 3E-07 63.5 25.5 179 228-413 194-385 (486)
12 TIGR01981 sufD FeS assembly pr 97.7 0.0069 1.5E-07 63.5 22.5 178 192-380 126-308 (366)
13 TIGR01980 sufB FeS assembly pr 97.7 0.014 2.9E-07 62.9 24.1 179 228-413 173-356 (448)
14 COG0719 SufB Cysteine desulfur 97.5 0.012 2.7E-07 62.6 21.1 168 193-372 166-337 (412)
15 PF01774 UreD: UreD urease acc 82.1 30 0.00064 33.3 12.8 84 228-311 16-102 (209)
16 COG0829 UreH Urease accessory 78.9 19 0.00041 36.2 10.5 118 188-311 27-146 (269)
17 PF00627 UBA: UBA/TS-N domain; 65.9 6 0.00013 27.1 2.5 26 427-452 1-26 (37)
18 PF12247 MKT1_N: Temperature d 49.9 18 0.00038 30.3 3.1 34 424-457 8-41 (90)
19 COG0829 UreH Urease accessory 31.4 3.9E+02 0.0085 27.0 9.8 66 261-328 63-136 (269)
20 PF01774 UreD: UreD urease acc 28.3 5.3E+02 0.011 24.6 13.9 68 262-330 19-94 (209)
21 smart00165 UBA Ubiquitin assoc 26.9 93 0.002 20.8 3.3 26 428-453 1-26 (37)
22 PF08275 Toprim_N: DNA primase 26.5 50 0.0011 29.2 2.3 20 429-448 12-31 (128)
23 PF10410 DnaB_bind: DnaB-helic 24.4 2.2E+02 0.0047 20.9 5.2 46 434-480 8-54 (59)
24 PF14076 DUF4258: Domain of un 23.3 89 0.0019 23.9 3.0 29 427-455 2-30 (73)
25 PF04256 DUF434: Protein of un 23.2 71 0.0015 24.6 2.2 24 430-453 8-31 (58)
26 cd00194 UBA Ubiquitin Associat 21.9 1.3E+02 0.0028 20.1 3.3 26 428-453 1-26 (38)
27 TIGR02111 PQQ_syn_pqqC coenzym 20.4 1.8E+02 0.0038 28.9 5.0 42 424-476 30-78 (239)
No 1
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=100.00 E-value=1.3e-86 Score=697.40 Aligned_cols=390 Identities=25% Similarity=0.346 Sum_probs=344.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCChhhhhccCCCCCC-CCCC---CCCCC-CCCCCCeEEEECcEEecccccCCCCC
Q 011429 75 KLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT-RPSS---SLDVS-TDAQFPSLVLIDGFIQNSALNLSNLP 149 (486)
Q Consensus 75 ~~R~~a~~~~~~~~~P~~k~E~WkyT~l~~l~~~~~~~~~-~~~~---~~~~~-~~~~~~~~vfvnG~~~~~ls~~~~lp 149 (486)
++|++||+.|+++|||++|+|+|||||++.+....+.+.. .... ...++ +.+.+ +++|+||.+.+.+|+.. +|
T Consensus 28 ~~r~~a~~~~~~~glPt~k~E~WkyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lvfvnG~~~~~ls~~~-~~ 105 (424)
T PRK10948 28 PQARQHWQQVLRLGLPTRKHEDWKYTPLEGLLNSQFVFSIAAEISPAQRDALALTIDAV-RLVFVDGRFSPALSDST-EG 105 (424)
T ss_pred HHHHHHHHHHHhCCCCCCCCcCcCCCCHHHHhccccccccccccChhhhhhccccCCce-EEEEECCEEchhhCccc-CC
Confidence 8999999999999999999999999999999876553211 1111 01122 22233 59999999999998843 33
Q ss_pred CCeEEEeCCCCChhHHHhhcccccccccCchhHHhhhcCCCCeEEEEEcCCceeeeeEEEEEEEecCCCcCCCCCccccc
Q 011429 150 DGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNP 229 (486)
Q Consensus 150 ~Gv~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~~~~ 229 (486)
+ |.++++. +... +.. ....++|++||+|++++|++||||+|+.+++||+|+++.++..+ ....+.++
T Consensus 106 ~-v~v~~~~-a~~~-----~~~---~~~~d~f~aLN~A~~~~g~~i~v~~~~~~~~Pi~i~~~~~~~~~---~~~~~~~~ 172 (424)
T PRK10948 106 P-YQVSIND-DRQG-----LPA---AIQPEVFLHLTESLAQSVTHIRLPRGQRPAKPLYLLHITQGVAG---EELNTAHY 172 (424)
T ss_pred C-eEEEEch-hhhh-----ccc---cccccHHHHHHHhhCcCCEEEEECCCCccccCEEEEEEecCCCc---cccccccc
Confidence 4 7777754 3222 111 11247999999999999999999999999999999988655311 00125689
Q ss_pred eEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEECC
Q 011429 230 RVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 309 (486)
Q Consensus 230 r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~v~~Gg 309 (486)
|++|++|+||+++|||+|.+.++ ..+|+|.++||++++||+|+|+++|.++.+++|+.+.++.++++|++++..+.+||
T Consensus 173 r~lI~~e~~a~~tiie~~~s~~~-~~~~~n~v~ei~~~~~A~l~~~~lq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~G~ 251 (424)
T PRK10948 173 RHHLDLAEGAEATVIEHFVSLNE-ARHFTGARLTMNVADNAHLNHIKLAFENPSSYHFAHNDLLLGRDARAFSHSFLLGA 251 (424)
T ss_pred eEEEEECCCCEEEEEEEeecCCC-CceeEeeeEEEEECCCCEEEEEEEEccCCCcEEEEEeEEEEcCCCEEEEEEEEeCC
Confidence 99999999999999999998643 46799999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEEEEEEEccCCccCccE
Q 011429 310 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAG 389 (486)
Q Consensus 310 ~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~~A~~T~a~ 389 (486)
+++|+++.+.|.|++|+++++|++++.++|++|+++.|.|.+|+|+|++++|||+. |+|++||+|+|+|.++||+|+|+
T Consensus 252 ~~~r~~~~~~L~G~~a~~~~~g~~l~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~-d~s~~vF~G~i~V~~~A~~t~a~ 330 (424)
T PRK10948 252 AVLRHNTSTQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVS-DKGRAVFNGLIKVAQHAIKTDGQ 330 (424)
T ss_pred ceEEEeeeEEEECCCcEEEEEEEEEcCCCEEEEccEEEEEcCCCcEEEEEEEEEEc-CCCEEEEEEEEEEecCCcCcccE
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHH
Q 011429 390 QLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQ 469 (486)
Q Consensus 390 q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~~~eA~~LLv~gF~~evi~~ip~~~lr~~ 469 (486)
|.|++||||++|+++|+|+|||++|||+|+||||||+||||||||||||||++++|++|||+||+.|++++||++.+|++
T Consensus 331 q~~~~LLLs~~A~~~t~P~LeI~adDV~~sHgATvG~ldee~LFYL~SRGi~~~~A~~Llv~gF~~evl~~i~~~~lr~~ 410 (424)
T PRK10948 331 MTNNNLLLGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQLFYLRSRGINQQDAQQMIIYAFAAELTEAIRDEALKQQ 410 (424)
T ss_pred EeecEEEECCCcceEecceEEEecCCeeEEeeeecCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 011429 470 VVSHVKNLMGTT 481 (486)
Q Consensus 470 l~~~i~~~l~~~ 481 (486)
+.+.|++||.+.
T Consensus 411 l~~~i~~~l~~~ 422 (424)
T PRK10948 411 VLARIGQRLPGG 422 (424)
T ss_pred HHHHHHHHHhcc
Confidence 999999999653
No 2
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=100.00 E-value=6.3e-87 Score=705.78 Aligned_cols=388 Identities=20% Similarity=0.251 Sum_probs=347.1
Q ss_pred CChhHHHHHHHHHHHhhcCCCCC--CCCCCCCCCChhhhhccCCCCCC----CCCC------CCCCC-----CCCCCCeE
Q 011429 69 QPLPLQKLRDSSSQTLLSTPWPS--RKDEPFRFTDTSMIKSSQIQPIT----RPSS------SLDVS-----TDAQFPSL 131 (486)
Q Consensus 69 ep~~l~~~R~~a~~~~~~~~~P~--~k~E~WkyT~l~~l~~~~~~~~~----~~~~------~~~~~-----~~~~~~~~ 131 (486)
+|.||.++|++|++.|.++|||+ +|+|.||||+++.+....+.... .+.. ..+++ ..... ++
T Consensus 35 ep~wl~~~R~~A~~~~~~l~~P~~~~~~e~w~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 113 (448)
T TIGR01980 35 EPDWMLDFRLRALELFEKMPMPTWGPDLSGIDYEDIVYYSKPDKKKATSWDEVPDEIKDTFEKLGIPEAERKALAGV-GA 113 (448)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCCCCCCcCccccEEeecccccccCChhhCCHHHHHHHHHcCCChHHhhhcCce-EE
Confidence 89999999999999999999999 99999999999977654331111 1111 11122 11222 58
Q ss_pred EEECcEEecccccCCCCCCCeEEEeCCCCC---hhHHHhhcccccccccCchhHHhhhcCCCCeEEEEEcCCceeeeeEE
Q 011429 132 VLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIY 208 (486)
Q Consensus 132 vfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~~~~Pi~ 208 (486)
+|++|.+...++.... ++||++++|+++. ++++++|++..... .+++|++||+|++++|+|||||+|+++++||+
T Consensus 114 ~~~~~~~~~~ls~~l~-~~GV~~~~l~~a~~~~~~~v~~~l~~~~~~-~~~~f~aLn~A~~~~G~~i~Vp~g~~~~~Pi~ 191 (448)
T TIGR01980 114 QYDSEVIYHNIKEDLE-EKGVIFCDMDTALKEYPDLVKEYFMSVVPP-SDNKFAALNGAVWSGGSFVYVPKGVRVDMPLQ 191 (448)
T ss_pred EEcCEEEEEcchhHHh-cCCEEEecHHHHHHhCHHHHHHHHhccCCC-cccHHHhHhhcccCceEEEEECCCCEeCCCEE
Confidence 9999999998876533 8899999998764 57788888763332 37899999999999999999999999999999
Q ss_pred EEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEE
Q 011429 209 LKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIK 288 (486)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~ 288 (486)
++|+..+.. ..+++|++|++|+||+++|||+|.++.....++||+++|+++++||+|+|++||+|+.+++|+.
T Consensus 192 ~~~~~~~~~-------~~~~~r~lIi~ee~s~~~iie~~~s~~~~~~~~~~~v~Ei~v~~~A~v~~~~iq~~~~~~~~~~ 264 (448)
T TIGR01980 192 TYFRINSEN-------TGQFEHTLIIADEGASVHYIEGCSAPIYSTNSLHAAVVELIVKEDARVRYSTVQNWSKNVYNLV 264 (448)
T ss_pred EEEEEcCCc-------cceeeeEEEEECCCCEEEEEEeccccCCCccceEEEEEEEEEcCCCEEEEEEEeecCCCeEEEE
Confidence 999876532 3578999999999999999999998633346899999999999999999999999999999999
Q ss_pred eEEEEEecCcEEEEEEEEECCeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCC
Q 011429 289 WTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSL 368 (486)
Q Consensus 289 ~~~v~~~~~s~~~~~~v~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~ 368 (486)
..++.++++|+++|+.+.+|++++|+++.+.|.|+||.++++|++++.++|++|+++.+.|.+|+|+|++++|||+. |+
T Consensus 265 ~~~~~~~~~a~~~~~~~~lG~~~s~~~~~~~L~G~~a~~~~~~~~l~~~~q~~D~~t~v~h~~p~t~s~~~~k~v~~-d~ 343 (448)
T TIGR01980 265 TKRALVEENGTMEWVSGSIGSKITMKYPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKMIHLAPNTSSTIISKSISK-GG 343 (448)
T ss_pred EEEEEEcCCCEEEEEEEEecCceEEEeceEEEEcCCcEEEEEEEEecCCCEEEEcceEEEEeCCCcEEEEEEEEEEC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ceEEEEEEEEEccCCccCccEEEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHH
Q 011429 369 GQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKA 448 (486)
Q Consensus 369 s~~vF~G~I~V~~~A~~T~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~~~eA~~L 448 (486)
|++||+|+|+|.++|++|+|+|+|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|
T Consensus 344 s~~vf~G~i~v~~~A~~t~a~q~~~~LlLs~~a~~~t~P~LeI~~dDV~~sHgAtvG~ideeqLFYL~SRGi~~~eA~~L 423 (448)
T TIGR01980 344 GKSTYRGLVKIGPGAKGAKSHVQCDSLLIDDESASDTIPYIEIFNDTVDVEHEATVSKISEEQLFYLMSRGLSEEDARAM 423 (448)
T ss_pred cEEEEEEEEEECCCCCCCccEEEEeEEEECCCcceEecceEEEecCCeEEEeeeeccCCCHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHhcCCChhHH
Q 011429 449 LVFSFGAEVIERFPYPSIR 467 (486)
Q Consensus 449 Lv~gF~~evi~~ip~~~lr 467 (486)
||+||+.+++++||++...
T Consensus 424 ii~gF~~evi~~ip~e~~~ 442 (448)
T TIGR01980 424 IVRGFVEPITKELPMEYAV 442 (448)
T ss_pred HHHHhHHHHHHhCChHHHH
Confidence 9999999999999986543
No 3
>CHL00085 ycf24 putative ABC transporter
Probab=100.00 E-value=2.4e-86 Score=706.39 Aligned_cols=400 Identities=19% Similarity=0.199 Sum_probs=349.6
Q ss_pred CChhHHHHHHHHHHHhhcCCCCC---CCCCCCCCCChhhhhccCCC---C--CCCCCC------CCCCCCCC------CC
Q 011429 69 QPLPLQKLRDSSSQTLLSTPWPS---RKDEPFRFTDTSMIKSSQIQ---P--ITRPSS------SLDVSTDA------QF 128 (486)
Q Consensus 69 ep~~l~~~R~~a~~~~~~~~~P~---~k~E~WkyT~l~~l~~~~~~---~--~~~~~~------~~~~~~~~------~~ 128 (486)
||.||.++|++|++.|.++|||+ +|.|+||||+++.+...... + ...+.. ..+++..+ ..
T Consensus 51 ep~Wl~~~R~~A~~~~~~~~~P~~~~~~~e~w~~t~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 130 (485)
T CHL00085 51 EPIFLLIFRLKAYKKWKKMKEPDWAFLKYPEIDYQDISYYSAPKLKKKLNSLDEVDPELLDTFEKLGISLNEQKRLANVA 130 (485)
T ss_pred CcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCchhceeeeccccccccCChhhCCHHHHHHHHhcCCCHHHHhhhcCCc
Confidence 89999999999999999999999 89999999998842221111 0 000100 01222111 11
Q ss_pred CeEEEECcEEecccccCCCCCCCeEEEeCCCCC---hhHHHhhcccccccccCchhHHhhhcCCCCeEEEEEcCCceeee
Q 011429 129 PSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVEN 205 (486)
Q Consensus 129 ~~~vfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~~~~ 205 (486)
..++|++|.+...++.... ++||+++++.++. ++++++|++..... .+++|++||+|++++|+|||||+|++++.
T Consensus 131 ~~~v~~~~~~~~~l~~~l~-~~Gv~~~~l~~a~~~~~~lv~~yl~~~~~~-~~~~f~aLn~A~~~~G~fi~Vp~gv~~~~ 208 (485)
T CHL00085 131 VDAVFDSVSIGTTFKEELA-KAGVIFCSISEAIQKYPELIKKYLGSVVPI-GDNYFAALNSAVFSDGSFCYIPKDTKCPL 208 (485)
T ss_pred eEEEEccEEEEeeccchhh-cCCeEEEcHHHHHhhhHHHHHHHhcccCCC-CchHHHHHHHHHcCCeEEEEECCCCcceE
Confidence 2488999999988776433 8899999998765 56678888764332 37899999999999999999999999999
Q ss_pred eEEEEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEecC----
Q 011429 206 PIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQS---- 281 (486)
Q Consensus 206 Pi~i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~---- 281 (486)
||++++...... .++++|++|++|+||+++|||+|.++.+...++||+++||++++||+|+|++||+|+
T Consensus 209 pl~~~~~~~~~~-------~~~~~r~lIi~eega~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~~~~ 281 (485)
T CHL00085 209 ELSTYFRINNEE-------SGQFERTLIIAEENSYVSYLEGCTAPQYDTNQLHAAVVELIALENAEIKYSTVQNWYAGDE 281 (485)
T ss_pred EEEEEEeecCCc-------cceeeeEEEEECCCCEEEEEEEeccCCCCccceEEEEEEEEECCCCEEEEEEEEeecCccc
Confidence 999888754322 368999999999999999999999864345689999999999999999999999996
Q ss_pred ---CCcEEEEeEEEEE-ecCcEEEEEEEEECCeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceee
Q 011429 282 ---LNAAHIKWTAVRQ-ETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCR 357 (486)
Q Consensus 282 ---~~~~~~~~~~v~~-~~~s~~~~~~v~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~ 357 (486)
.+.+|+...+..+ +++|+++|..+.+||+++|+++.+.|.|+||+++++|++++.++|++|+++++.|.+|+|+|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~r~~~~~~L~G~~a~~~~~~i~l~~~~Q~~D~~t~v~h~~p~t~S~ 361 (485)
T CHL00085 282 NGEGGIYNFVTKRGLCAGKNSKISWTQVETGSAITWKYPSCILIGDNSQGEFYSVALTNNYQQADTGTKMIHIGKNTKSR 361 (485)
T ss_pred cccCceeeeeeeEEEEEcCCcEEEEEEEEecCceEEeeceEEEecCCcEEEEEEEEEccCCEEEEeeEEEEEcCCCcEEE
Confidence 5667776666665 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCceEEEEEEEEEccCCccCccEEEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHHHHh
Q 011429 358 QLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQA 437 (486)
Q Consensus 358 ~~~K~il~~d~s~~vF~G~I~V~~~A~~T~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~S 437 (486)
+++|||+. |+|++||+|+|+|.++||+|+|+|+|++||||++|+++|+|+|||++|||+|+|||||||||+||||||||
T Consensus 362 ~~~k~Il~-d~s~~vF~G~i~V~~~A~~t~a~q~~~~LLLs~~a~~~t~P~LeI~adDV~~sHgAtvG~ideeqLFYL~S 440 (485)
T CHL00085 362 IISKGISA-GKSKNSYRGLVKIGPKALNSRNYSQCDSLLIGNKSQANTFPYIQVQNSTAKIEHEASTSKIGEEQLFYFLQ 440 (485)
T ss_pred EEEEEEEC-CCCEEEEEEEEEECCCCCCCccceeeceEEEcCCCcEEecceEEEecCCeeEEEeeccCCCCHHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHHHHHHHHHhc
Q 011429 438 RGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMG 479 (486)
Q Consensus 438 RGI~~~eA~~LLv~gF~~evi~~ip~~~lr~~l~~~i~~~l~ 479 (486)
|||++++|++|||+||+.+++++||++ ++++|.+.|+.||.
T Consensus 441 RGi~e~eA~~Llv~gF~~evi~~ip~e-~~~~l~~~i~~~l~ 481 (485)
T CHL00085 441 RGINLEEAISLLISGFCKDVFNKLPME-FALEADRLLSLKLE 481 (485)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhc
Confidence 999999999999999999999999998 88889999999997
No 4
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=100.00 E-value=2.9e-86 Score=705.39 Aligned_cols=399 Identities=18% Similarity=0.199 Sum_probs=352.8
Q ss_pred CChhHHHHHHHHHHHhhcCCCCC---CCCCCCCCCChhhhhccCC---CCC--CCCCC------CCCCC--CC-------
Q 011429 69 QPLPLQKLRDSSSQTLLSTPWPS---RKDEPFRFTDTSMIKSSQI---QPI--TRPSS------SLDVS--TD------- 125 (486)
Q Consensus 69 ep~~l~~~R~~a~~~~~~~~~P~---~k~E~WkyT~l~~l~~~~~---~~~--~~~~~------~~~~~--~~------- 125 (486)
||.||.++|++|++.|+++|||+ +|.|+|+||+++.+....+ .+. ..+.. ..+++ +.
T Consensus 50 ep~Wl~~~R~~A~~~~~~l~~P~~~~~~~e~w~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 129 (486)
T PRK11814 50 EPEWMLEWRLKAYRHWLTMEEPHWAKVHYPPIDYQDISYYSAPKCKSKPKSLDEVDPELLETFEKLGIPLREQKRLAGRE 129 (486)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcccceeeeccccccccCCcccCCHHHHHHHHhcCCCHHHHhhhhccc
Confidence 89999999999999999999999 8999999999987776433 110 11111 11122 11
Q ss_pred CCCCeEEEECcEEecccccCCCCCCCeEEEeCCCCC---hhHHHhhcccccccccCchhHHhhhcCCCCeEEEEEcCCce
Q 011429 126 AQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCK 202 (486)
Q Consensus 126 ~~~~~~vfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~---~~~~~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~ 202 (486)
... .++|++|.+...++.... ++||+++++.++. ++++++|++..... .+++|++||+|++++|+|||||+|++
T Consensus 130 ~~~-~~v~~~~~~~~~ls~~l~-~~GV~~~~l~~a~~~~~~lv~~~l~~~~~~-~~~~f~aLn~A~~~~G~fi~Vp~gv~ 206 (486)
T PRK11814 130 VAV-DAVFDSVSVATTFKEKLA-EAGVIFCSISEAIQEHPELVKKYLGSVVPV-NDNFFAALNSAVFSDGSFVYIPKGVR 206 (486)
T ss_pred cce-EEEEcCeEEEeccCchhh-cCCeEEEcHHHHhhhhHHHHHHHhccCCCC-CchHHHHHHHhhcCCeEEEEECCCCc
Confidence 122 488999999988876533 8899999998765 57788888774332 37899999999999999999999999
Q ss_pred eeeeEEEEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEec--
Q 011429 203 VENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQ-- 280 (486)
Q Consensus 203 ~~~Pi~i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~-- 280 (486)
++.||++++...... ..+++|++|++|+||+++|||+|.++.....++||+++||++++||+|+|++||+|
T Consensus 207 ~~~pi~~~~~~~~~~-------~~~~~r~lIi~ee~S~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~ 279 (486)
T PRK11814 207 CPMELSTYFRINAAN-------TGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELVALDDAEIKYSTVQNWYP 279 (486)
T ss_pred eeEEEEEEEeecCCC-------cceeeEEEEEECCCCEEEEEEEecCCCCCccceeeEEEEEEECCCCEEEEEEEEeecC
Confidence 999999988764422 36899999999999999999999986233468999999999999999999999999
Q ss_pred -----CCCcEEEEeEEEE-EecCcEEEEEEEEECCeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCc
Q 011429 281 -----SLNAAHIKWTAVR-QETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRG 354 (486)
Q Consensus 281 -----~~~~~~~~~~~v~-~~~~s~~~~~~v~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~ 354 (486)
+.+++|+...++. ++++|+++|..+.+|++++|+++.+.|.|+||.++++|++++.++|++|+++++.|.+|+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lG~~~~r~~~~~~L~G~ga~~~~~gi~l~~~~q~~D~~t~v~H~~p~t 359 (486)
T PRK11814 280 GDENGKGGIYNFVTKRGLCRGENSKISWTQVETGSAITWKYPSCILRGDNSVGEFYSVALTNGHQQADTGTKMIHIGKNT 359 (486)
T ss_pred ccccCCCceEEEeeeEEEEecCCcEEEEEEEEcCCceEEeecceEEecCCcEEEEEeEEeccCCEEEEeeEEEEEcCCCc
Confidence 7888998888888 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEEeCCCceEEEEEEEEEccCCccCccEEEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHH
Q 011429 355 YCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFY 434 (486)
Q Consensus 355 ~S~~~~K~il~~d~s~~vF~G~I~V~~~A~~T~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFY 434 (486)
+|++++|||+. |+|++||+|+|+|.++|++|+|+|.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||
T Consensus 360 ~S~~~~k~V~~-d~s~~vF~G~i~V~~~A~~t~a~q~~~~LLLs~~A~~~t~P~LeI~adDV~~sHgATvG~ideeqLFY 438 (486)
T PRK11814 360 KSTIISKGISA-GHSQNTYRGLVKIMPKATNARNFTQCDSLLIGDQCGAHTFPYIEVKNNSAQVEHEATTSKISEDQLFY 438 (486)
T ss_pred EEEEEEEEEEc-CCcEEEEEEEEEECCCCcCCccceeeeeEEecCCCceEecceEEEecCCeeEEeeeecCCCCHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHHHHHHHHHhc
Q 011429 435 FQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMG 479 (486)
Q Consensus 435 L~SRGI~~~eA~~LLv~gF~~evi~~ip~~~lr~~l~~~i~~~l~ 479 (486)
||||||++++|++|||+||+.+++++||++.+++ +.+.|+..+.
T Consensus 439 L~SRGi~e~eA~~Llv~gF~~evi~~ip~e~~~e-~~~~i~~~~~ 482 (486)
T PRK11814 439 CRQRGISEEDAVSMIVNGFCKEVFQELPMEFAVE-AQKLLAISLE 482 (486)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHCCcHHHHH-HHHHHHHHhc
Confidence 9999999999999999999999999999988877 7777776664
No 5
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=100.00 E-value=2.8e-81 Score=649.24 Aligned_cols=362 Identities=31% Similarity=0.487 Sum_probs=322.0
Q ss_pred CCCCCCCCCCCCChhhhhccCCCCCC-CCCC--CCCCCCCCCCCeEEEECcEEecccccCCCCCCCeEEEeCCCCChhHH
Q 011429 89 WPSRKDEPFRFTDTSMIKSSQIQPIT-RPSS--SLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIM 165 (486)
Q Consensus 89 ~P~~k~E~WkyT~l~~l~~~~~~~~~-~~~~--~~~~~~~~~~~~~vfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~~~~~ 165 (486)
||++|+|+||||+++.+....+.+.. .+.. ....+..... ++||+||++.+.+++...++.|+.+..+.+..
T Consensus 1 ~P~~~~e~wkyt~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~lv~~~G~~~~~l~~~~~~~~~~~~~~l~~~~---- 75 (366)
T TIGR01981 1 LPPRRIEEWRYTDLENLLNESFQPRAAVPQEVQAAGLPLTKSP-RLVFVDGVIVPDLSDALPLHPELLEDLLDALA---- 75 (366)
T ss_pred CCCCcccCccCCCHHHhhhcccCcccCCCccccccccccCCce-eEEEECCEEecChhhhhccCcceEEeehhccc----
Confidence 69999999999999998876664321 1111 1122222233 49999999999988766677788777664321
Q ss_pred HhhcccccccccCchhHHhhhcCCCCeEEEEEcCCceeeeeEEEEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEE
Q 011429 166 KRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIE 245 (486)
Q Consensus 166 ~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie 245 (486)
. ...+++|.+||+|++++|+|||||+|+++++||+++++.++.++ ..+++|++|++|+||+++|+|
T Consensus 76 -------~-~~~~~~~~aln~a~~~~G~~i~v~~~~~~~~Pi~i~~~~~~~~~------~~~~~~~~i~v~~~s~~~iie 141 (366)
T TIGR01981 76 -------V-LSDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIGVGGEK------NFVHPRLLIIVEKGSKITVIE 141 (366)
T ss_pred -------C-cCCccHHHHHHHHHhCCeEEEEECCCCCcCCCEEEEEEEcCCCc------cceeeEEEEEECCCCEEEEEE
Confidence 1 11368999999999999999999999999999999998765321 256899999999999999999
Q ss_pred EeeecCC-CcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEECCeEEEEEEEEEEeCCC
Q 011429 246 EFVGKEG-NDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPD 324 (486)
Q Consensus 246 ~~~~~~~-~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~v~~Gg~~~r~~~~~~l~G~~ 324 (486)
+|.+... ...+++|+++||++++||+|+|+.+|+|+.+++|+..+++.++++|++.++.+.+||+++|+++.+.|.|+|
T Consensus 142 ~~~~~~~~~~~~~~~~~~ei~~~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~a~~~~~~~~~gg~~~r~~~~~~l~G~~ 221 (366)
T TIGR01981 142 RFETISLNSGKAFTNSVVEITVGANASVIFVKVQFFSKNSTHFSNHRAFIGRDATLRLAVVNLGGKLSRHNFDVDLEGEG 221 (366)
T ss_pred EecCCCCCCcccEEEEEEEEEECCCCEEEEEEEEcCCCCcEEEEEeEEEEcCCCEEEEEEEEcCCccEEEeeeEEEEcCC
Confidence 9987532 234799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEEEEEEEccCCccCccEEEeceEEeCCCceee
Q 011429 325 TETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVN 404 (486)
Q Consensus 325 a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~~A~~T~a~q~~~~LLLs~~A~~~ 404 (486)
|+++++|++++.++|++|+++.+.|.+|+|+|++++|||+. |+|+++|+|+|+|.++|++|+|+|.|++||||++|+++
T Consensus 222 a~~~~~g~~~~~~~q~~D~~~~i~h~~~~t~s~~~~kgvl~-d~s~~vf~G~i~I~~~A~~t~a~q~~~~LlLs~~A~~~ 300 (366)
T TIGR01981 222 SKLEVKGLAFGAGSQHVDVRTNVVHNGPDTKSNILHRGILD-DRAHGVFRGIIHIPKGAKGTDAEQLNRNLLLSDDARAD 300 (366)
T ss_pred cEEEEEEEEECCCCEEeccCeEEEEcCCCcEEEEEEEEEEc-CCcEEEEEEEEEECCCcCcCccccEeeeEEECCCcccc
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccceeEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHH
Q 011429 405 VKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQV 470 (486)
Q Consensus 405 s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~~~eA~~LLv~gF~~evi~~ip~~~lr~~l 470 (486)
|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||.||+.+++++||++.+|++|
T Consensus 301 t~P~LeI~adDV~~sHgATvG~ldee~LFYL~SRGi~~~eA~~llv~gF~~~vi~~i~~e~lr~~l 366 (366)
T TIGR01981 301 TKPILEIDADDVKASHGATVGQIDDEQLFYLRSRGIDEEEARRLLIRGFLGEIIEEIPDESLKEEL 366 (366)
T ss_pred cCceEEEecCCceEecceeecCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCHHhHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999864
No 6
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-74 Score=604.11 Aligned_cols=397 Identities=26% Similarity=0.342 Sum_probs=341.4
Q ss_pred CChhHHHHHHHHHHHhhcCCCC---CCCCCCCCCCChhhhhccCCCCCCCCCCCCCCCCCCCCCeEEEECcEEecccccC
Q 011429 69 QPLPLQKLRDSSSQTLLSTPWP---SRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNL 145 (486)
Q Consensus 69 ep~~l~~~R~~a~~~~~~~~~P---~~k~E~WkyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vfvnG~~~~~ls~~ 145 (486)
+|+|+.++|.+++..+..+++| .+|.+.|+|+.++.+........ +...+++++.+. ..+.++..........
T Consensus 11 ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~--~~~~~~~~~~~~~~~~ 86 (412)
T COG0719 11 EPEWMLALRLKALRASPDLEMPEVPTRRDELWELDFLDRLYYLAPGEA--SFKRLGIPDAEE--VLAQCDSVVVYHAVSG 86 (412)
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCcccccccCcChhHhhhccCCCcc--cccccCCCchhc--cceeecceeehhhcch
Confidence 8999999999999999999887 35679999999887776543211 111233333232 1333443322221112
Q ss_pred CCCCCCeEEEeCCCCChhHHHhhcccccccccCchhHHhhhcCCCCeEEEEEcCCceeeeeEEEEEEEecCCCcCCCCCc
Q 011429 146 SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLP 225 (486)
Q Consensus 146 ~~lp~Gv~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~ 225 (486)
.-.|+||.++++....+++.++|+..-.....+++|++||++++++|+|||||+|++++.||+++|...+... .
T Consensus 87 ~~~~~gv~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~aL~~a~~~~g~fiyVp~g~~~~~Pi~~~~~~~~~~~------~ 160 (412)
T COG0719 87 ELAPEGVIVEDILKEHPDLVKKYFGKGVVPDDDDKFAALNAALFSDGTFIYVPKGVEVPTPIQLYFIINGENT------G 160 (412)
T ss_pred hhhhCccEEeechhhhhHHHHHhCCCcccCCCcceeeeeeeeEEcCcEEEEeCCCceeccceEEEEEecCCCc------c
Confidence 2237899999994455788888886522222479999999999999999999999999999999888653221 3
Q ss_pred cccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEE
Q 011429 226 ISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEV 305 (486)
Q Consensus 226 ~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~v 305 (486)
.+++|++|++|+||+++++|+|.++ .....+|++++||++++||+|+|..||+|+....++....+..+++++++|+.+
T Consensus 161 ~q~~~~lIiveega~v~~ie~~~~p-~~~~~~h~~vvei~v~~nA~v~~~~vqn~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (412)
T COG0719 161 VQFERTLIIVEEGAEITVIEGCSAP-VGSGSLHNGVVEIFVGENASLTYTTVQNWSPVYNHLTKRAAVEEEDATVRWTQV 239 (412)
T ss_pred ceeeeEEEEECCCCEEEEEccccCC-CCCCcceeeEEEEEEcCCCEEEEEEecccccceeeeeeeeeeeccCcEEEEEEE
Confidence 4899999999999999999999876 444566999999999999999999999999988888888899999999999999
Q ss_pred EECCeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEEEEEEEccCCcc
Q 011429 306 STGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQ 385 (486)
Q Consensus 306 ~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~~A~~ 385 (486)
.+|+++++.+..+.|.|+||.+++.+++++.++|++|+.+++.|++|+|+|++++|||+. |+|+.+|+|.|+|.++|++
T Consensus 240 ~~G~~~t~~~~~~~l~Ge~a~~e~~sv~~~~~~q~~D~~~~v~h~g~~t~s~i~~kgI~~-d~a~~vfrG~i~i~~~A~~ 318 (412)
T COG0719 240 TLGSKVTRKYPSVRLKGEGADGELLSVAFAGGGQHMDVGTKMIHNGPNTRSNILSKGIVK-DGARTVFRGLIDIRKGATG 318 (412)
T ss_pred ecCCceEEEeceEEEEcCCceEEEEEEEEccCCeEEcccceEEEecCCceeEEEEEEEEc-CCCEEEEEeEEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CccEEEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChh
Q 011429 386 TDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPS 465 (486)
Q Consensus 386 T~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~~~eA~~LLv~gF~~evi~~ip~~~ 465 (486)
|+|+|+|++||||++|+++|+|.|||++|||+|+||||||+||+|||||||||||+++||++|||+||+.|++++||.+.
T Consensus 319 s~a~~~c~~LlLs~~a~~dt~P~LeI~~ddV~~~H~Atvg~ideeqLFYLmSRGl~e~eA~~lIV~GF~~~vi~~lp~~~ 398 (412)
T COG0719 319 SDAYQECRTLLLSDDARADTVPILEIETDDVKAGHEATVGRIDEEQLFYLMSRGLSEEEAKRLIVRGFLEEVIEELPEEA 398 (412)
T ss_pred CchheeeceEEecCCcccccCceEEEecCCceEeeceeecccChHHEEehhhcCCCHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHH
Q 011429 466 IRNQVVSHVKNL 477 (486)
Q Consensus 466 lr~~l~~~i~~~ 477 (486)
++..+...++.+
T Consensus 399 v~~~~~~~~~~~ 410 (412)
T COG0719 399 VEEQLLIFIELE 410 (412)
T ss_pred HHHHHHHHHhhc
Confidence 888777776654
No 7
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=100.00 E-value=1.3e-57 Score=444.20 Aligned_cols=227 Identities=33% Similarity=0.522 Sum_probs=198.8
Q ss_pred ccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEE
Q 011429 225 PISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVE 304 (486)
Q Consensus 225 ~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~ 304 (486)
.++++|++|++|+||+++|+|.+.... ....+++.+++|++++||+|+|+.+|+|+....++..+.+.++++|+++|+.
T Consensus 3 ~~~~~~~~I~v~~~s~~~i~~~~~~~~-~~~~~~~~~~~i~v~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 81 (229)
T PF01458_consen 3 GAQFPRNLIIVEEGSEVTIIESYSSNS-GESSLHNGVIEIYVGENARLKYVSVQNWGENSIHFSNTRVILGENASLNWVS 81 (229)
T ss_dssp EEEEEEEEEEE-TT-EEEEEEEEEETT-SSEEEEEEEEEEEE-TT-EEEEEEEEE--TCEEEEEEEEEEE-TT-EEEEEE
T ss_pred ccEeeeEEEEECCCCEEEEEEEeCCCC-CCceEEEEEEEEEECCCcEEEEEEEecCCCcEEEEEEEEEEEcCceEEEEEE
Confidence 367899999999999999999966654 4578999999999999999999999999999999999999999999999999
Q ss_pred EEECCeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEEEEEEEccCCc
Q 011429 305 VSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQ 384 (486)
Q Consensus 305 v~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~~A~ 384 (486)
+.+|++++|+++.+.|.|+||.++++|++++.++|++|+++.+.|.+|+|+|++++|||+. |+|+.+|+|+|+|.++|+
T Consensus 82 ~~~g~~~~~~~~~~~l~G~~s~~~~~~~~~~~~~~~~d~~~~i~h~~~~t~s~~~~r~v~~-d~s~~vf~G~i~i~~~a~ 160 (229)
T PF01458_consen 82 VSLGGKMSRNRIEIELNGEGSSAELNGVYLGSGDQRIDINTNIIHNGPNTTSNILSRGVLK-DKSKVVFRGRIKIEKGAQ 160 (229)
T ss_dssp EES--SEEEEEEEEEE-STT-EEEEEEEEEE-TT-EEEEEEEEEE-STT-EEEEEEEEEES-TTSEEEEEEEEEEECTST
T ss_pred EEeCCeeEEEEEEEEEcCCCCEEEEEEEEEecCCEEEeccEEEEEECCCcEEEEEEEEEEc-CCceEEEEeEEEEhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCccEEEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 385 QTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 385 ~T~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
+|+++|.|++||||++|+++++|.|||++|||+|+||||||+||||||||||||||+++||++||+.||
T Consensus 161 ~s~~~q~~~~llls~~A~~~s~P~LeI~~~dV~a~H~AtvG~idee~LFYL~SRGl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 161 GSDAHQECRNLLLSDEARAYSIPELEIDEDDVKASHGATVGQIDEEQLFYLMSRGLSEEEARKLIVKGF 229 (229)
T ss_dssp TEEEEEEEEEEE-STT-EEEEEEEEEE-SSSEEEEEEEEEEES-HHHHHHHHCTT--HHHHHHHHHHHH
T ss_pred CChheeeEeeEEccCCeEEEEEEhHhcccCCcEEEEeeEeecCCHHHHHHHHHcCCCHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
No 8
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=98.45 E-value=0.00027 Score=69.04 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=114.6
Q ss_pred EEEEEcCCceeeeeEEEEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEE
Q 011429 193 GVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKV 272 (486)
Q Consensus 193 ~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l 272 (486)
..|.|.+|.++. |...+ ...... ....+..+.|.+++||+++++....... ..++...+.+.++++|++
T Consensus 9 ~~I~v~~~s~~~--i~~~~-~~~~~~-----~~~~~~~~~i~v~~~a~l~~~~~~~~~~---~~~~~~~~~~~~~~~a~~ 77 (229)
T PF01458_consen 9 NLIIVEEGSEVT--IIESY-SSNSGE-----SSLHNGVIEIYVGENARLKYVSVQNWGE---NSIHFSNTRVILGENASL 77 (229)
T ss_dssp EEEEE-TT-EEE--EEEEE-EETTSS-----EEEEEEEEEEEE-TT-EEEEEEEEE--T---CEEEEEEEEEEE-TT-EE
T ss_pred EEEEECCCCEEE--EEEEe-CCCCCC-----ceEEEEEEEEEECCCcEEEEEEEecCCC---cEEEEEEEEEEEcCceEE
Confidence 578999998863 11111 111111 1345566779999999999998554422 334666789999999999
Q ss_pred EEEEEEecCCCcEEEEeEEEEE-ecCcEEEEEEEEECCe--EEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEe--EE
Q 011429 273 RHSYLQNQSLNAAHIKWTAVRQ-ETASGYELVEVSTGGK--LSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHS--RL 347 (486)
Q Consensus 273 ~~~~vq~~~~~~~~~~~~~v~~-~~~s~~~~~~v~~Gg~--~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~--~i 347 (486)
++..+..-+ ..... ...+.+ +++|.+++..+.++.. .......+.+.|+++.+.+..-.++.++.+.-+.. .|
T Consensus 78 ~~~~~~~g~-~~~~~-~~~~~l~G~~s~~~~~~~~~~~~~~~~d~~~~i~h~~~~t~s~~~~r~v~~d~s~~vf~G~i~i 155 (229)
T PF01458_consen 78 NWVSVSLGG-KMSRN-RIEIELNGEGSSAELNGVYLGSGDQRIDINTNIIHNGPNTTSNILSRGVLKDKSKVVFRGRIKI 155 (229)
T ss_dssp EEEEEES---SEEEE-EEEEEE-STT-EEEEEEEEEE-TT-EEEEEEEEEE-STT-EEEEEEEEEESTTSEEEEEEEEEE
T ss_pred EEEEEEeCC-eeEEE-EEEEEEcCCCCEEEEEEEEEecCCEEEeccEEEEEECCCcEEEEEEEEEEcCCceEEEEeEEEE
Confidence 999995443 33333 344444 9999999888877554 45556678899999999999999998887776655 44
Q ss_pred EEecCCceeeEEEEEEEeCCCceEEEEEEEEEccC
Q 011429 348 LLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRY 382 (486)
Q Consensus 348 ~h~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~~ 382 (486)
...++++.+.|..++++..++++..-.=.+.|..+
T Consensus 156 ~~~a~~s~~~q~~~~llls~~A~~~s~P~LeI~~~ 190 (229)
T PF01458_consen 156 EKGAQGSDAHQECRNLLLSDEARAYSIPELEIDED 190 (229)
T ss_dssp ECTSTTEEEEEEEEEEE-STT-EEEEEEEEEE-SS
T ss_pred hhhhhCChheeeEeeEEccCCeEEEEEEhHhcccC
Confidence 45668999999999998888999888877777643
No 9
>CHL00085 ycf24 putative ABC transporter
Probab=97.82 E-value=0.0098 Score=64.59 Aligned_cols=179 Identities=7% Similarity=-0.056 Sum_probs=123.0
Q ss_pred cceEEEEeCCCCeEEEEEEeee-cCCCcceeeeeEEEEEEcCCCEEEEEEEEec---CCCcEEEEeEEEEEecCcEEEEE
Q 011429 228 NPRVVVLVEEGGEVGIIEEFVG-KEGNDCYWANSVLEVVIGKGGKVRHSYLQNQ---SLNAAHIKWTAVRQETASGYELV 303 (486)
Q Consensus 228 ~~r~lIvveega~~~iie~~~~-~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~---~~~~~~~~~~~v~~~~~s~~~~~ 303 (486)
..-.+|.|.+|.++.+-..... .... ....+.-+-|++++||+++++.-... .....|...+.+.++++|+++++
T Consensus 193 ~~G~fi~Vp~gv~~~~pl~~~~~~~~~-~~~~~~r~lIi~eega~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~ 271 (485)
T CHL00085 193 SDGSFCYIPKDTKCPLELSTYFRINNE-ESGQFERTLIIAEENSYVSYLEGCTAPQYDTNQLHAAVVELIALENAEIKYS 271 (485)
T ss_pred CCeEEEEECCCCcceEEEEEEEeecCC-ccceeeeEEEEECCCCEEEEEEEeccCCCCccceEEEEEEEEECCCCEEEEE
Confidence 3457899999988775333222 2211 12334567899999999998754331 34467888889999999999999
Q ss_pred EEEE---------CCeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEE
Q 011429 304 EVST---------GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFD 374 (486)
Q Consensus 304 ~v~~---------Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~ 374 (486)
.+.. ++............|++|..+...+.++.+-.+.+. .+.+.++++.++. +|+.. ..+....+
T Consensus 272 ~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~r~~~--~~~L~G~~a~~~~--~~i~l-~~~~Q~~D 346 (485)
T CHL00085 272 TVQNWYAGDENGEGGIYNFVTKRGLCAGKNSKISWTQVETGSAITWKYP--SCILIGDNSQGEF--YSVAL-TNNYQQAD 346 (485)
T ss_pred EEEeecCccccccCceeeeeeeEEEEEcCCcEEEEEEEEecCceEEeec--eEEEecCCcEEEE--EEEEE-ccCCEEEE
Confidence 8855 233322333445568999999888888777666665 4677888777654 44444 44555666
Q ss_pred EEEEEccCCccCccEEEeceEEeCCCceeeccceeEEEc
Q 011429 375 GNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIA 413 (486)
Q Consensus 375 G~I~V~~~A~~T~a~q~~~~LLLs~~A~~~s~P~LeI~a 413 (486)
=...|...|.+|.+.+..++++.+ +|+..-.-.+.|..
T Consensus 347 ~~t~v~h~~p~t~S~~~~k~Il~d-~s~~vF~G~i~V~~ 384 (485)
T CHL00085 347 TGTKMIHIGKNTKSRIISKGISAG-KSKNSYRGLVKIGP 384 (485)
T ss_pred eeEEEEEcCCCcEEEEEEEEEECC-CCEEEEEEEEEECC
Confidence 566677789999999999999864 67777666666643
No 10
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=97.78 E-value=0.018 Score=61.57 Aligned_cols=178 Identities=6% Similarity=0.050 Sum_probs=121.0
Q ss_pred CeEEEEEcCCceeeeeEEEEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCC
Q 011429 191 DLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGG 270 (486)
Q Consensus 191 ~G~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A 270 (486)
.-.+|.+.+|.++. |.-.|...... ....+..+-|.+++||+++++...... ...+|-....+.++++|
T Consensus 172 ~r~lI~~e~~a~~t--iie~~~s~~~~------~~~~n~v~ei~~~~~A~l~~~~lq~~~---~~~~~~~~~~~~~~~~s 240 (424)
T PRK10948 172 YRHHLDLAEGAEAT--VIEHFVSLNEA------RHFTGARLTMNVADNAHLNHIKLAFEN---PSSYHFAHNDLLLGRDA 240 (424)
T ss_pred ceEEEEECCCCEEE--EEEEeecCCCC------ceeEeeeEEEEECCCCEEEEEEEEccC---CCcEEEEEeEEEEcCCC
Confidence 34689999998763 33233321111 124556678999999999988654422 22345556788999999
Q ss_pred EEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEECCeEEEEE--EEEEEeCCCceEEEEEEEEecCCeEEEeEeEEE
Q 011429 271 KVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHN--VHVQQLGPDTETELSSFHLLVSDQTQDLHSRLL 348 (486)
Q Consensus 271 ~l~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~v~~Gg~~~r~~--~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~ 348 (486)
++++..+..-+.-+.+ .....-.+++|..++..+.++..-.+.+ ..+...|+++.++...-.+..++.+.-+...+.
T Consensus 241 ~~~~~~~~~G~~~~r~-~~~~~L~G~~a~~~~~g~~l~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~d~s~~vF~G~i~ 319 (424)
T PRK10948 241 RAFSHSFLLGAAVLRH-NTSTQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLIK 319 (424)
T ss_pred EEEEEEEEeCCceEEE-eeeEEEECCCcEEEEEEEEEcCCCEEEEccEEEEEcCCCcEEEEEEEEEEcCCCEEEEEEEEE
Confidence 9999888864433322 2233334789999888888776554444 557788999998887666777776666666555
Q ss_pred E--ecCCceeeEEEEEEEeCCCceEEEEEEEEEc
Q 011429 349 L--DHPRGYCRQLHKCIVAHSLGQAVFDGNVKVN 380 (486)
Q Consensus 349 h--~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~ 380 (486)
. .+.++.+.|..++++..++++..=.=.+.|.
T Consensus 320 V~~~A~~t~a~q~~~~LLLs~~A~~~t~P~LeI~ 353 (424)
T PRK10948 320 VAQHAIKTDGQMTNNNLLLGKLAEVDTKPQLEIY 353 (424)
T ss_pred EecCCcCcccEEeecEEEECCCcceEecceEEEe
Confidence 5 4688999999999988678877655555554
No 11
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=97.74 E-value=0.014 Score=63.48 Aligned_cols=179 Identities=8% Similarity=0.012 Sum_probs=123.1
Q ss_pred cceEEEEeCCCCeEEEEEE-eeecCCCcceeeeeEEEEEEcCCCEEEEEEEEe---cCCCcEEEEeEEEEEecCcEEEEE
Q 011429 228 NPRVVVLVEEGGEVGIIEE-FVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQN---QSLNAAHIKWTAVRQETASGYELV 303 (486)
Q Consensus 228 ~~r~lIvveega~~~iie~-~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~---~~~~~~~~~~~~v~~~~~s~~~~~ 303 (486)
+.-.+|.|.+|.++.+-.. |...... ......-+-|++++||+++++.-.. ......|...+.+.++++|+++++
T Consensus 194 ~~G~fi~Vp~gv~~~~pi~~~~~~~~~-~~~~~~r~lIi~ee~S~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~ 272 (486)
T PRK11814 194 SDGSFVYIPKGVRCPMELSTYFRINAA-NTGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELVALDDAEIKYS 272 (486)
T ss_pred CCeEEEEECCCCceeEEEEEEEeecCC-CcceeeEEEEEECCCCEEEEEEEecCCCCCccceeeEEEEEEECCCCEEEEE
Confidence 4457899999998875333 2222211 1234456789999999999864333 123467788889999999999998
Q ss_pred EEEE-------CCeEEEE--EEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEE
Q 011429 304 EVST-------GGKLSRH--NVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFD 374 (486)
Q Consensus 304 ~v~~-------Gg~~~r~--~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~ 374 (486)
.+.. |+.-+.+ .......|++|..+...+.++.+-.+.+. .+.+.++++.++.. |+.. ..+...++
T Consensus 273 ~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lG~~~~r~~~--~~~L~G~ga~~~~~--gi~l-~~~~q~~D 347 (486)
T PRK11814 273 TVQNWYPGDENGKGGIYNFVTKRGLCRGENSKISWTQVETGSAITWKYP--SCILRGDNSVGEFY--SVAL-TNGHQQAD 347 (486)
T ss_pred EEEeecCccccCCCceEEEeeeEEEEecCCcEEEEEEEEcCCceEEeec--ceEEecCCcEEEEE--eEEe-ccCCEEEE
Confidence 8864 1222222 33344378899988888888777666665 46788888776544 4444 44555666
Q ss_pred EEEEEccCCccCccEEEeceEEeCCCceeeccceeEEEc
Q 011429 375 GNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIA 413 (486)
Q Consensus 375 G~I~V~~~A~~T~a~q~~~~LLLs~~A~~~s~P~LeI~a 413 (486)
=...|...+.+|.+.+..++++.+ +|+..-.-.+.|..
T Consensus 348 ~~t~v~H~~p~t~S~~~~k~V~~d-~s~~vF~G~i~V~~ 385 (486)
T PRK11814 348 TGTKMIHIGKNTKSTIISKGISAG-HSQNTYRGLVKIMP 385 (486)
T ss_pred eeEEEEEcCCCcEEEEEEEEEEcC-CcEEEEEEEEEECC
Confidence 666777889999999999999764 67877777766654
No 12
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=97.73 E-value=0.0069 Score=63.47 Aligned_cols=178 Identities=15% Similarity=0.123 Sum_probs=121.5
Q ss_pred eEEEEEcCCceeeeeEEEEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCE
Q 011429 192 LGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGK 271 (486)
Q Consensus 192 G~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~ 271 (486)
=..|.|.+|.++. |.-.+....... .....+..+-|.+++||+++++...... ...++-..+.+.++++|+
T Consensus 126 ~~~i~v~~~s~~~--iie~~~~~~~~~----~~~~~~~~~ei~~~~~A~l~~~~iq~~~---~~~~~~~~~~~~~~~~a~ 196 (366)
T TIGR01981 126 RLLIIVEKGSKIT--VIERFETISLNS----GKAFTNSVVEITVGANASVIFVKVQFFS---KNSTHFSNHRAFIGRDAT 196 (366)
T ss_pred EEEEEECCCCEEE--EEEEecCCCCCC----cccEEEEEEEEEECCCCEEEEEEEEcCC---CCcEEEEEeEEEEcCCCE
Confidence 4688999998863 221222111010 0124455678999999999988664332 233455568899999999
Q ss_pred EEEEEEEecCCCcEEEEeEEEEE-ecCcEEEEEEEEECCeE--EEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEE
Q 011429 272 VRHSYLQNQSLNAAHIKWTAVRQ-ETASGYELVEVSTGGKL--SRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLL 348 (486)
Q Consensus 272 l~~~~vq~~~~~~~~~~~~~v~~-~~~s~~~~~~v~~Gg~~--~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~ 348 (486)
+++..+...+..+.+ ...+.+ +++|.+.+..+.++.+- ......+.+.|+++.++...-.+..++.+.-+..++.
T Consensus 197 ~~~~~~~~gg~~~r~--~~~~~l~G~~a~~~~~g~~~~~~~q~~D~~~~i~h~~~~t~s~~~~kgvl~d~s~~vf~G~i~ 274 (366)
T TIGR01981 197 LRLAVVNLGGKLSRH--NFDVDLEGEGSKLEVKGLAFGAGSQHVDVRTNVVHNGPDTKSNILHRGILDDRAHGVFRGIIH 274 (366)
T ss_pred EEEEEEEcCCccEEE--eeeEEEEcCCcEEEEEEEEECCCCEEeccCeEEEEcCCCcEEEEEEEEEEcCCcEEEEEEEEE
Confidence 999998876554332 334444 68899988888776554 5555668899999999998888888877766666554
Q ss_pred E--ecCCceeeEEEEEEEeCCCceEEEEEEEEEc
Q 011429 349 L--DHPRGYCRQLHKCIVAHSLGQAVFDGNVKVN 380 (486)
Q Consensus 349 h--~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~ 380 (486)
. .+.+|.+.|..++++..++|+..=.=.+.|.
T Consensus 275 I~~~A~~t~a~q~~~~LlLs~~A~~~t~P~LeI~ 308 (366)
T TIGR01981 275 IPKGAKGTDAEQLNRNLLLSDDARADTKPILEID 308 (366)
T ss_pred ECCCcCcCccccEeeeEEECCCcccccCceEEEe
Confidence 4 4589999999999988667776544444443
No 13
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=97.67 E-value=0.014 Score=62.92 Aligned_cols=179 Identities=13% Similarity=0.027 Sum_probs=124.0
Q ss_pred cceEEEEeCCCCeEEE-EEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEe---cCCCcEEEEeEEEEEecCcEEEEE
Q 011429 228 NPRVVVLVEEGGEVGI-IEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQN---QSLNAAHIKWTAVRQETASGYELV 303 (486)
Q Consensus 228 ~~r~lIvveega~~~i-ie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~---~~~~~~~~~~~~v~~~~~s~~~~~ 303 (486)
..-.+|.|.+|.++.. |+.|...... .......+-|.+++||+++++.-.. ......|...+.+.++++|+++++
T Consensus 173 ~~G~~i~Vp~g~~~~~Pi~~~~~~~~~-~~~~~~r~lIi~ee~s~~~iie~~~s~~~~~~~~~~~v~Ei~v~~~A~v~~~ 251 (448)
T TIGR01980 173 SGGSFVYVPKGVRVDMPLQTYFRINSE-NTGQFEHTLIIADEGASVHYIEGCSAPIYSTNSLHAAVVELIVKEDARVRYS 251 (448)
T ss_pred CceEEEEECCCCEeCCCEEEEEEEcCC-ccceeeeEEEEECCCCEEEEEEeccccCCCccceEEEEEEEEEcCCCEEEEE
Confidence 4457899999988763 2223222211 1233456789999999999864332 233467888899999999999999
Q ss_pred EEEECCeEEEEEEE-EEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEEEEEEEccC
Q 011429 304 EVSTGGKLSRHNVH-VQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRY 382 (486)
Q Consensus 304 ~v~~Gg~~~r~~~~-~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~~ 382 (486)
.+...+.-+.+... ....+++|..+...+.++.+..+.+. .+.+.++++.++.. |+.. ..+....+=...|...
T Consensus 252 ~iq~~~~~~~~~~~~~~~~~~~a~~~~~~~~lG~~~s~~~~--~~~L~G~~a~~~~~--~~~l-~~~~q~~D~~t~v~h~ 326 (448)
T TIGR01980 252 TVQNWSKNVYNLVTKRALVEENGTMEWVSGSIGSKITMKYP--SSILKGEGAKTEFL--SIAF-AGKGQHLDTGAKMIHL 326 (448)
T ss_pred EEeecCCCeEEEEEEEEEEcCCCEEEEEEEEecCceEEEec--eEEEEcCCcEEEEE--EEEe-cCCCEEEEcceEEEEe
Confidence 99765554444332 33568999999988888777666554 46778887776544 4444 4455566666677788
Q ss_pred CccCccEEEeceEEeCCCceeeccceeEEEc
Q 011429 383 AQQTDAGQLTRSLLLEPRATVNVKPNLQIIA 413 (486)
Q Consensus 383 A~~T~a~q~~~~LLLs~~A~~~s~P~LeI~a 413 (486)
+.+|.+.|..++++.+ +|+..-.-.+.|..
T Consensus 327 ~p~t~s~~~~k~v~~d-~s~~vf~G~i~v~~ 356 (448)
T TIGR01980 327 APNTSSTIISKSISKG-GGKSTYRGLVKIGP 356 (448)
T ss_pred CCCcEEEEEEEEEECC-CcEEEEEEEEEECC
Confidence 9999999999999864 67777666666653
No 14
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.012 Score=62.56 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=117.6
Q ss_pred EEEEEcCCceeeeeEEEEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEE
Q 011429 193 GVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKV 272 (486)
Q Consensus 193 ~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l 272 (486)
+.|.|.+|..+. .|-..... .+ . ....+.-+-|++++||+++++....-. ..+.+.....+..+++|++
T Consensus 166 ~lIiveega~v~---~ie~~~~p-~~--~--~~~h~~vvei~v~~nA~v~~~~vqn~~---~~~~~~~~~~~~~~~~a~~ 234 (412)
T COG0719 166 TLIIVEEGAEIT---VIEGCSAP-VG--S--GSLHNGVVEIFVGENASLTYTTVQNWS---PVYNHLTKRAAVEEEDATV 234 (412)
T ss_pred EEEEECCCCEEE---EEccccCC-CC--C--CcceeeEEEEEEcCCCEEEEEEecccc---cceeeeeeeeeeeccCcEE
Confidence 678888887542 12112111 10 0 012344567999999999988765432 2344455566778899999
Q ss_pred EEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEECCe--EEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEE-
Q 011429 273 RHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGK--LSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL- 349 (486)
Q Consensus 273 ~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~v~~Gg~--~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h- 349 (486)
+++.+..-+....+.. .....+++|..++..+.+++. .......+.+.|+++.+++..-.+..++.+.-+.-.+..
T Consensus 235 ~~~~~~~G~~~t~~~~-~~~l~Ge~a~~e~~sv~~~~~~q~~D~~~~v~h~g~~t~s~i~~kgI~~d~a~~vfrG~i~i~ 313 (412)
T COG0719 235 RWTQVTLGSKVTRKYP-SVRLKGEGADGELLSVAFAGGGQHMDVGTKMIHNGPNTRSNILSKGIVKDGARTVFRGLIDIR 313 (412)
T ss_pred EEEEEecCCceEEEec-eEEEEcCCceEEEEEEEEccCCeEEcccceEEEecCCceeEEEEEEEEcCCCEEEEEeEEEEe
Confidence 9998887665555544 334457999999988888766 555566788999999999998888888877766666665
Q ss_pred -ecCCceeeEEEEEEEeCCCceEE
Q 011429 350 -DHPRGYCRQLHKCIVAHSLGQAV 372 (486)
Q Consensus 350 -~~p~~~S~~~~K~il~~d~s~~v 372 (486)
.++++.+.+..+.++..++|++.
T Consensus 314 ~~A~~s~a~~~c~~LlLs~~a~~d 337 (412)
T COG0719 314 KGATGSDAYQECRTLLLSDDARAD 337 (412)
T ss_pred cCCCCCchheeeceEEecCCcccc
Confidence 77899999999998885667754
No 15
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=82.06 E-value=30 Score=33.32 Aligned_cols=84 Identities=14% Similarity=0.071 Sum_probs=45.6
Q ss_pred cceEEEEeCCCCeEEEEEEeeec--CCCcceeeeeEEEEEEcCCCEEEEEEEEec-CCCcEEEEeEEEEEecCcEEEEEE
Q 011429 228 NPRVVVLVEEGGEVGIIEEFVGK--EGNDCYWANSVLEVVIGKGGKVRHSYLQNQ-SLNAAHIKWTAVRQETASGYELVE 304 (486)
Q Consensus 228 ~~r~lIvveega~~~iie~~~~~--~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~-~~~~~~~~~~~v~~~~~s~~~~~~ 304 (486)
..++-|.+++||.+.|...-... ...........+++.|++||.|+|.--..- -.++.....+.+.+.++|.+-+..
T Consensus 16 ~l~~~i~v~~ga~~~ltTqaatkvy~~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~A~~~q~~~v~l~~~A~l~~~e 95 (209)
T PF01774_consen 16 RLRIDITVGPGARLLLTTQAATKVYRMRGGRPARQRIRITVEEGAYLEYLPDPTIPFAGARFRQRTRVDLAPGASLIYWE 95 (209)
T ss_dssp EEEEEEEE-TT-EEEEE----EEE---TTS--EEEEEEEEE-TT-EEEE----EEE-TT-EEEEEEEEEE-TT-EEEEEE
T ss_pred EEEEEEEECCCCEEEEechhhhhhcCCCCCCcEEEEEEEEECCCCEEEEcCCCCEeeCCCEEEEEEEEEECCCCEEEEEE
Confidence 45788999999999987542221 011122356778999999999998521111 235566778888889999888877
Q ss_pred EEECCeE
Q 011429 305 VSTGGKL 311 (486)
Q Consensus 305 v~~Gg~~ 311 (486)
+-.-|+.
T Consensus 96 ~i~~GR~ 102 (209)
T PF01774_consen 96 IITPGRP 102 (209)
T ss_dssp EEE-S-G
T ss_pred ecccCCC
Confidence 6655554
No 16
>COG0829 UreH Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]
Probab=78.89 E-value=19 Score=36.25 Aligned_cols=118 Identities=11% Similarity=0.014 Sum_probs=65.4
Q ss_pred CCCCeEEEEEcCCceeeeeEEEEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeec-CCCcceeeeeEEEEEE
Q 011429 188 GAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGK-EGNDCYWANSVLEVVI 266 (486)
Q Consensus 188 ~~~~G~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~-~~~~~~~~n~v~ei~v 266 (486)
+...-+.|.-|.-.. +.+.+++.+.++++-.+ .-....-|.+++|+++.|...-... -.........-++|.|
T Consensus 27 ~~~~plkV~~p~y~~-~~~~~~~li~~~GGv~g-----GD~l~~di~lg~~a~~~iTTQsatKvYrs~~g~A~Q~~~i~v 100 (269)
T COG0829 27 FQTGPLKVQRPFYPD-EGLCEAMLIHPSGGVVG-----GDRLEIDIELGDNAKALITTQSATKVYRSPGGQATQTTNITV 100 (269)
T ss_pred hccCCeEEEccCcCC-CCCeEEEEEeCCCCccc-----cceEEEEEEECCCceEEEEccccceeEeCCCCceEEEEEEEE
Confidence 333344455554443 34555555544433111 1234567999999999986542221 0111233566799999
Q ss_pred cCCCEEEEEEEEec-CCCcEEEEeEEEEEecCcEEEEEEEEECCeE
Q 011429 267 GKGGKVRHSYLQNQ-SLNAAHIKWTAVRQETASGYELVEVSTGGKL 311 (486)
Q Consensus 267 ~~~A~l~~~~vq~~-~~~~~~~~~~~v~~~~~s~~~~~~v~~Gg~~ 311 (486)
++||.|+|.-=..- -+++.-..++.+.++++|++-...+..=|+.
T Consensus 101 g~nA~LewlPq~tI~F~~a~f~q~~~~~L~~sA~l~~~E~~~~GR~ 146 (269)
T COG0829 101 GENARLEWLPQETIPFEGARFKQHTRFELASSATLLYWEILALGRV 146 (269)
T ss_pred CCCCEEEecCCcceecCCceeEEEEEEEeCCCceehhhhhhhcCcc
Confidence 99999998511110 1233334567778888887766555444443
No 17
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=65.89 E-value=6 Score=27.07 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.2
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHh
Q 011429 427 LEESQLFYFQARGIDLETARKALVFS 452 (486)
Q Consensus 427 iDeeqLFYL~SRGI~~~eA~~LLv~g 452 (486)
||++++=.|+..|+++++|++-|...
T Consensus 1 i~~~~v~~L~~mGf~~~~~~~AL~~~ 26 (37)
T PF00627_consen 1 IDEEKVQQLMEMGFSREQAREALRAC 26 (37)
T ss_dssp SHHHHHHHHHHHTS-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 68899999999999999999988654
No 18
>PF12247 MKT1_N: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022040 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the N-terminal region of MKT1.
Probab=49.90 E-value=18 Score=30.34 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=29.7
Q ss_pred ccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHH
Q 011429 424 ISDLEESQLFYFQARGIDLETARKALVFSFGAEV 457 (486)
Q Consensus 424 vG~iDeeqLFYL~SRGI~~~eA~~LLv~gF~~ev 457 (486)
+|+-=+++|||++|+|+=-.+--..|+.|.+.+-
T Consensus 8 iG~rLP~elYfyls~GLi~~~ll~~lt~G~~~~~ 41 (90)
T PF12247_consen 8 IGQRLPDELYFYLSIGLISPRLLNALTSGEWIER 41 (90)
T ss_pred hccCCCHHHHHHHHccccChHHHhHhccceEecc
Confidence 5766789999999999999999999999988653
No 19
>COG0829 UreH Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]
Probab=31.38 E-value=3.9e+02 Score=26.98 Aligned_cols=66 Identities=8% Similarity=0.092 Sum_probs=45.0
Q ss_pred EEEEEEcCCCEEEEE-----EEEecCCCcEEEEeEEEEEecCcEEEEEE---EEECCeEEEEEEEEEEeCCCceEE
Q 011429 261 VLEVVIGKGGKVRHS-----YLQNQSLNAAHIKWTAVRQETASGYELVE---VSTGGKLSRHNVHVQQLGPDTETE 328 (486)
Q Consensus 261 v~ei~v~~~A~l~~~-----~vq~~~~~~~~~~~~~v~~~~~s~~~~~~---v~~Gg~~~r~~~~~~l~G~~a~~~ 328 (486)
-.+|.+++||++.+. +|+....+. -...+.+.+++||.+.|.. +-+.+..-....++.|. ++|..-
T Consensus 63 ~~di~lg~~a~~~iTTQsatKvYrs~~g~-A~Q~~~i~vg~nA~LewlPq~tI~F~~a~f~q~~~~~L~-~sA~l~ 136 (269)
T COG0829 63 EIDIELGDNAKALITTQSATKVYRSPGGQ-ATQTTNITVGENARLEWLPQETIPFEGARFKQHTRFELA-SSATLL 136 (269)
T ss_pred EEEEEECCCceEEEEccccceeEeCCCCc-eEEEEEEEECCCCEEEecCCcceecCCceeEEEEEEEeC-CCceeh
Confidence 368999999999875 566554444 3456788899999999963 45554444445677764 555543
No 20
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=28.30 E-value=5.3e+02 Score=24.60 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=37.1
Q ss_pred EEEEEcCCCEEEEE-----EEEecCCCcEEEEeEEEEEecCcEEEEEE---EEECCeEEEEEEEEEEeCCCceEEEE
Q 011429 262 LEVVIGKGGKVRHS-----YLQNQSLNAAHIKWTAVRQETASGYELVE---VSTGGKLSRHNVHVQQLGPDTETELS 330 (486)
Q Consensus 262 ~ei~v~~~A~l~~~-----~vq~~~~~~~~~~~~~v~~~~~s~~~~~~---v~~Gg~~~r~~~~~~l~G~~a~~~~~ 330 (486)
++|.+++||++.+. +|.....+..-...+.+.++++|.++|.. +-+.+..-+...++.|. ++|.+-..
T Consensus 19 ~~i~v~~ga~~~ltTqaatkvy~~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~A~~~q~~~v~l~-~~A~l~~~ 94 (209)
T PF01774_consen 19 IDITVGPGARLLLTTQAATKVYRMRGGRPARQRIRITVEEGAYLEYLPDPTIPFAGARFRQRTRVDLA-PGASLIYW 94 (209)
T ss_dssp EEEEE-TT-EEEEE----EEE---TTS--EEEEEEEEE-TT-EEEE----EEE-TT-EEEEEEEEEE--TT-EEEEE
T ss_pred EEEEECCCCEEEEechhhhhhcCCCCCCcEEEEEEEEECCCCEEEEcCCCCEeeCCCEEEEEEEEEEC-CCCEEEEE
Confidence 78999999999875 34433233324556788999999999964 55666666667778774 45544433
No 21
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=26.93 E-value=93 Score=20.78 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=21.5
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 428 EESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 428 DeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
+++.+=-|++-|+++++|+.-|...-
T Consensus 1 ~~~~v~~L~~mGf~~~~a~~aL~~~~ 26 (37)
T smart00165 1 DEEKIDQLLEMGFSREEALKALRAAN 26 (37)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 46778889999999999998876653
No 22
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=26.50 E-value=50 Score=29.22 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=14.3
Q ss_pred hhhHHHHHhcCCCHHHHHHH
Q 011429 429 ESQLFYFQARGIDLETARKA 448 (486)
Q Consensus 429 eeqLFYL~SRGI~~~eA~~L 448 (486)
++.+=||.+|||+++.++..
T Consensus 12 ~~a~~YL~~Rgl~~e~i~~F 31 (128)
T PF08275_consen 12 KEALEYLKKRGLSDETIKKF 31 (128)
T ss_dssp HHHHHHHHHTT--HHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHh
Confidence 34899999999998877654
No 23
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=24.38 E-value=2.2e+02 Score=20.90 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=31.8
Q ss_pred HHHhcC-CCHHHHHHHHHHhhHHHHHhcCCChhHHHHHHHHHHHHhcc
Q 011429 434 YFQARG-IDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGT 480 (486)
Q Consensus 434 YL~SRG-I~~~eA~~LLv~gF~~evi~~ip~~~lr~~l~~~i~~~l~~ 480 (486)
|++.++ ++-.+-|.=++.- +.++|.+||++-.|+...+.+.++++-
T Consensus 8 ~l~~~~dl~~~egk~~~~~~-~~~~i~~i~~~i~r~~y~~~la~~~~i 54 (59)
T PF10410_consen 8 RLSKGYDLDTPEGKAEAVRE-AAPLIAQIPDPIERELYIRELAERLGI 54 (59)
T ss_dssp HHGGGS-TTSHHHHHHHHHH-HHHHHTT--SHHHHHHHHHHHHHHCT-
T ss_pred HHHhcCCCCCHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHhCc
Confidence 444443 5555555555554 678999999999999999999998864
No 24
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=23.33 E-value=89 Score=23.91 Aligned_cols=29 Identities=24% Similarity=0.102 Sum_probs=23.2
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHhhHH
Q 011429 427 LEESQLFYFQARGIDLETARKALVFSFGA 455 (486)
Q Consensus 427 iDeeqLFYL~SRGI~~~eA~~LLv~gF~~ 455 (486)
+.+-.+-=|+.|||+.++....|..|-..
T Consensus 2 ~s~Ha~~rm~eR~Is~~~I~~~l~~g~i~ 30 (73)
T PF14076_consen 2 FSKHARERMQERGISEEDIEDALENGEII 30 (73)
T ss_pred CCHHHHHHHHhCCCCHHHHHHHHhcCeEe
Confidence 34555667899999999999999887653
No 25
>PF04256 DUF434: Protein of unknown function (DUF434); InterPro: IPR007368 This is a family of uncharacterised proteins.
Probab=23.16 E-value=71 Score=24.57 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.9
Q ss_pred hhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 430 SQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 430 eqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
+.+.||..||-+.+.|-.++-+=|
T Consensus 8 ~Dl~yLLnRGY~~k~al~fVgnhy 31 (58)
T PF04256_consen 8 EDLRYLLNRGYPKKSALEFVGNHY 31 (58)
T ss_pred HHHHHHHhCCCCchhHHHHHHHhc
Confidence 568999999999999998887655
No 26
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=21.94 E-value=1.3e+02 Score=20.13 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=21.2
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 428 EESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 428 DeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
+++++=-|++-|+++++|+..|...-
T Consensus 1 ~~~~v~~L~~mGf~~~~~~~AL~~~~ 26 (38)
T cd00194 1 DEEKLEQLLEMGFSREEARKALRATN 26 (38)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 46778889999999999998876543
No 27
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=20.43 E-value=1.8e+02 Score=28.92 Aligned_cols=42 Identities=29% Similarity=0.544 Sum_probs=33.9
Q ss_pred ccCCChhhH-------HHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Q 011429 424 ISDLEESQL-------FYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKN 476 (486)
Q Consensus 424 vG~iDeeqL-------FYL~SRGI~~~eA~~LLv~gF~~evi~~ip~~~lr~~l~~~i~~ 476 (486)
-|+++.+|| ||.+.+ |+..+| .++...||..+|..+...|.+
T Consensus 30 ~GkLt~~ql~~wa~nrYyyq~~-iP~kdA----------Ai~s~c~D~e~Rr~wl~ri~D 78 (239)
T TIGR02111 30 DGKLTRDQVQAWVLNRYYYQAN-IPLKDA----------AILARCPDPQLRRIWRQRILD 78 (239)
T ss_pred cCCCCHHHHHHHHHHhhhhhhc-ccHHHH----------HHHHcCCCHHHHHHHHHHHHH
Confidence 478999998 999999 998885 455899999999877766654
Done!