Query 011429
Match_columns 486
No_of_seqs 227 out of 1629
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vh4_A SUFD protein; structura 100.0 4E-87 1.4E-91 704.8 48.5 394 71-481 25-423 (435)
2 4dn7_A ABC transporter, ATP-bi 100.0 1.4E-72 4.8E-77 590.6 43.0 332 131-479 93-427 (429)
3 1vh4_A SUFD protein; structura 98.1 0.0028 9.6E-08 66.4 30.0 177 193-381 175-355 (435)
4 4dn7_A ABC transporter, ATP-bi 98.1 0.0035 1.2E-07 65.5 29.1 177 193-381 183-362 (429)
5 3sf5_B Urease accessory protei 65.4 40 0.0014 32.4 10.6 83 228-310 62-146 (265)
6 2crn_A Ubash3A protein; compac 57.2 8.2 0.00028 29.0 3.2 31 423-453 4-34 (64)
7 3ic3_A Putative pyruvate dehyd 50.8 13 0.00045 30.5 3.6 27 433-459 63-89 (101)
8 2ekk_A UBA domain from E3 ubiq 46.7 15 0.0005 25.6 2.9 30 423-452 4-33 (47)
9 2g3q_A Protein YBL047C; endocy 42.4 15 0.00052 24.9 2.4 26 428-453 4-29 (43)
10 1whc_A RSGI RUH-027, UBA/UBX 3 42.2 30 0.001 25.8 4.2 29 425-453 6-34 (64)
11 2dag_A Ubiquitin carboxyl-term 41.9 21 0.00071 27.5 3.4 28 426-453 7-34 (74)
12 2dak_A Ubiquitin carboxyl-term 39.9 25 0.00086 26.0 3.5 29 425-453 6-34 (63)
13 1wji_A Tudor domain containing 37.8 32 0.0011 25.6 3.8 28 426-453 7-34 (63)
14 1ify_A HHR23A, UV excision rep 35.6 17 0.00058 25.6 1.8 30 424-453 4-33 (49)
15 2cpw_A CBL-interacting protein 32.8 27 0.00093 26.1 2.6 27 427-453 18-44 (64)
16 2juj_A E3 ubiquitin-protein li 31.2 42 0.0014 24.4 3.2 25 428-452 7-31 (56)
17 1z96_A DNA-damage, UBA-domain 30.8 39 0.0013 22.1 3.0 24 429-452 5-28 (40)
18 1vek_A UBP14, ubiquitin-specif 28.6 44 0.0015 26.4 3.3 30 424-453 25-54 (84)
19 3ff5_A PEX14P, peroxisomal bio 28.4 46 0.0016 24.2 3.1 24 428-451 30-53 (54)
20 1wiv_A UBP14, ubiquitin-specif 27.4 50 0.0017 25.3 3.4 30 424-453 25-54 (73)
21 2oo9_A E3 ubiquitin-protein li 26.4 54 0.0019 22.9 3.0 24 429-452 5-28 (46)
22 2dai_A Ubadc1, ubiquitin assoc 26.2 47 0.0016 26.2 3.1 27 427-453 28-54 (83)
23 2ooa_A E3 ubiquitin-protein li 23.3 73 0.0025 22.9 3.3 26 426-452 10-35 (52)
24 2w84_A Peroxisomal membrane pr 20.4 88 0.003 23.9 3.4 25 428-452 35-59 (70)
No 1
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=100.00 E-value=4e-87 Score=704.77 Aligned_cols=394 Identities=25% Similarity=0.349 Sum_probs=352.5
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCCCCCCCCCChhhhhccCCCCCCCCCC-----CCCCCCCCCCCeEEEECcEEecccccC
Q 011429 71 LPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSS-----SLDVSTDAQFPSLVLIDGFIQNSALNL 145 (486)
Q Consensus 71 ~~l~~~R~~a~~~~~~~~~P~~k~E~WkyT~l~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~vfvnG~~~~~ls~~ 145 (486)
.||.++|++||+.|+++|||++|.|+||||||+.+....+.+...... ...++ .+.. +++|+||.+.+.+++.
T Consensus 25 ~~l~~~R~~a~~~~~~~~~P~~~~e~w~~t~l~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~v~v~g~~~~~ls~~ 102 (435)
T 1vh4_A 25 TKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALT-LDSV-RLVFVDGRYVPALSDA 102 (435)
T ss_dssp -CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCC-CCSE-EEEEETTEECGGGSCC
T ss_pred chhHHHHHHHHHHHHhCCCCCCCccccccCchHHhhcccccccccccChhHHhhhcCc-cCce-EEEEECCEEeeecccc
Confidence 579999999999999999999999999999999998877644321111 01122 2333 4899999999887652
Q ss_pred CCCCCCeEEEeCCCCChhHHHhhcccccccccCchhHHhhhcCCCCeEEEEEcCCceeeeeEEEEEEEecCCCcCCCCCc
Q 011429 146 SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLP 225 (486)
Q Consensus 146 ~~lp~Gv~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~ 225 (486)
.+|+||+++++.+ ++|+.... . .|+|++||+|++++|+|||||+|+++++||+++|+.++.+.. ...
T Consensus 103 -~~~~Gv~~~~~~~------~~~~~~~~--~-~~~f~aln~a~~~~G~~i~Vp~g~~~~~Pi~l~~~~~~~~~~---~~~ 169 (435)
T 1vh4_A 103 -TEGSGYEVSINDD------RQGLPDAI--Q-AEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGE---EVN 169 (435)
T ss_dssp -CTTSSCEEEEESC------CTTCCCCS--S-CCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSS---CEE
T ss_pred -ccCCCeEEEecch------hhhhhccc--C-chHHHHHHHHhcCCcEEEEECCCCEecccEEEEEEecCCccc---ccc
Confidence 3689999999976 34554322 2 399999999999999999999999999999998775432100 003
Q ss_pred cccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEE
Q 011429 226 ISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEV 305 (486)
Q Consensus 226 ~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~v 305 (486)
.+++|++|++|+||+++|||+|.++.. ..+++++++||++++||+|+|+.+|+|+.+++++..+++.++++|+++|+.+
T Consensus 170 ~~~~r~lIi~eegs~v~iie~~~~~~~-~~~~~~~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (435)
T 1vh4_A 170 TAHYRHHLDLAEGAEATVIEHFVSLND-ARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSF 248 (435)
T ss_dssp EEEEEEEEEECTTCEEEEEEEEEESSS-SCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEE
T ss_pred eeeeEEEEEECCCCEEEEEEEeccCCc-ccceeeeEEEEEECCCCEEEEEEEEecCCCeEEEEEEEEEECCCCEEEEEEE
Confidence 579999999999999999999998743 4689999999999999999999999999999999999999999999999999
Q ss_pred EECCeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCCCceEEEEEEEEEccCCcc
Q 011429 306 STGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQ 385 (486)
Q Consensus 306 ~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~~A~~ 385 (486)
.+||+++|+++.+.|.|+||.++++|++++.++|++|+++.++|.+|+|+|++++|||+. |+|+++|+|+|+|.++|++
T Consensus 249 ~~G~~~~~~~~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kgil~-d~s~~vf~G~i~v~~~A~~ 327 (435)
T 1vh4_A 249 LLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVS-DKGRAVFNGLINVAQHAIK 327 (435)
T ss_dssp ECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEEC-TTCEEEEEEEEEECTTCTT
T ss_pred EECCceEEEeeEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEEEEc-CCCeEEEEEEEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CccEEEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChh
Q 011429 386 TDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPS 465 (486)
Q Consensus 386 T~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~~~eA~~LLv~gF~~evi~~ip~~~ 465 (486)
|+|+|.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||+||+.+++++||++.
T Consensus 328 t~a~~~~~~LlLs~~a~~~t~P~LeI~~dDV~~~H~AtvG~ideeqLFYL~SRGi~e~eA~~Liv~gF~~~vi~~i~~e~ 407 (435)
T 1vh4_A 328 TDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEG 407 (435)
T ss_dssp EEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CeeEEEeeeEEccCCCcEEeeeeEEEEcCCEEEEeeeecCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 011429 466 IRNQVVSHVKNLMGTT 481 (486)
Q Consensus 466 lr~~l~~~i~~~l~~~ 481 (486)
+|+++.+.|+.+|+..
T Consensus 408 l~~~l~~~i~~~l~~~ 423 (435)
T 1vh4_A 408 LKQQVLARIGQRLPGG 423 (435)
T ss_dssp HHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999999753
No 2
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=100.00 E-value=1.4e-72 Score=590.64 Aligned_cols=332 Identities=19% Similarity=0.227 Sum_probs=301.5
Q ss_pred EEEECcEEecccccCCCCCCCeEEEeCCCCCh--hHHHhhcccccccccCchhHHhhhcCCCCeEEEEEcCCceeeeeEE
Q 011429 131 LVLIDGFIQNSALNLSNLPDGVYVGSLLGVSD--GIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAGCKVENPIY 208 (486)
Q Consensus 131 ~vfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~~--~~~~~~~~~~~~~~~~d~f~aLn~a~~~~G~~I~Vp~g~~~~~Pi~ 208 (486)
.+.+|...+... -.|+||+++++.+|.. +++++|++..... .+|+|++||+|+|++|+|||||+|++++.||+
T Consensus 93 ~~q~d~~~v~~~----~~~~GV~~~~l~~Al~~~~lv~~y~~~~v~~-~~d~f~Aln~A~~~~G~fI~Vp~gv~~~~Pi~ 167 (429)
T 4dn7_A 93 FLVLDNAVSHST----LKDKNVELMSTHKAMEKYEWLKDYSWKLVQV-DADKYTAKTYLEDADGYFIRVPAGKKTSMPVQ 167 (429)
T ss_dssp EEEETTEEEEEE----ESSSSSEEEEHHHHHHHCGGGGGTTTTSSCT-TSSHHHHHHHHTTCBCEEEEECTTCBCSSCEE
T ss_pred EEEEcCceEEEe----ecCCCEEEEcHHHHhhhhHHHHHHHhccCCC-CcCHHHHHHHhhCCCcEEEEECCCcEEEEEEE
Confidence 577886655431 1368999999988754 5677787764443 38999999999999999999999999999999
Q ss_pred EEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEE
Q 011429 209 LKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIK 288 (486)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l~~~~vq~~~~~~~~~~ 288 (486)
++|+....+ ..+++|++|++|+||+++|||+|.++.....++|++++||++++||+|+|+.||+|+.+.+++.
T Consensus 168 ~~~~i~~~~-------~~~~~r~lIi~eegA~v~iie~c~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~vq~~~~~~~~~~ 240 (429)
T 4dn7_A 168 TCLMLGSKK-------AAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQIGVRP 240 (429)
T ss_dssp EEEEECSSS-------EEEEEEEEEEECTTCEEEEEEEEEECTTCCEEEEEEEEEEEECTTCEEEEEEEECCCTEEEEEE
T ss_pred EEEEEcCCc-------cceeeeEEEEECCCCEEEEEEEecCCCCcccceEEEEEEEEECCCCEEEEEEEeecCCCcEEec
Confidence 988765432 4689999999999999999999998754456899999999999999999999999999999999
Q ss_pred eEEEEEecCcEEEEEEEEECC-eEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEEecCCceeeEEEEEEEeCC
Q 011429 289 WTAVRQETASGYELVEVSTGG-KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHS 367 (486)
Q Consensus 289 ~~~v~~~~~s~~~~~~v~~Gg-~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h~~p~~~S~~~~K~il~~d 367 (486)
.+++.++++|.|.+..+.+|| ...+.++.+.|.|+||.++++|++++.++|++|+++++.|.+|+|+|++++|+|+.
T Consensus 241 ~~~~~~~~~a~~~~~~v~~~g~~~~~~~~~~~L~Ge~A~~~~~~v~l~~g~q~~D~~t~v~H~gp~t~S~i~~k~V~~-- 318 (429)
T 4dn7_A 241 RTVVSVEEGGTYVSNYICLKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITI-- 318 (429)
T ss_dssp EEEEEECTTCEEEEEEEECSCCSEEEECCEEEECSTTCEEEEEEEEEECTTCEEEEEEEEEECSTTCEEEEEEEEEES--
T ss_pred ceeEEECCCcEEEEEEEEecCceEEeeeeeEEEecCCcEEEEEEEEecCCceEEEEEEEEEEecCCcEEEEEeeEEEe--
Confidence 999999999999999999976 67777889999999999999999999999999999999999999999999999986
Q ss_pred CceEEEEEEEEEccCCccCccEEEeceEEeCCCceeeccceeEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHH
Q 011429 368 LGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARK 447 (486)
Q Consensus 368 ~s~~vF~G~I~V~~~A~~T~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~~~eA~~ 447 (486)
+|+.+|+|+|. ++|++|+|+|.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++
T Consensus 319 ~s~~vfrG~I~--~~A~~t~~~q~~~~LLLsd~A~~~t~P~LeI~~dDV~~~HgATvG~IdeeqLFYL~SRGIse~eA~~ 396 (429)
T 4dn7_A 319 GGRLIARGEMI--GNAKGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAKDQVEYLMARGLTEDEAVG 396 (429)
T ss_dssp SSEEEEEEEEE--ECSTTEEEEEEEEEEECSSSCEEEEEEEEEECSSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHH
T ss_pred ccEEEEeeeEe--cCCcCceeEEEeeeEEecCCceEEeeeEEEEEcCCeEEEeccccCCCCHHHHHHHHHcCCCHHHHHH
Confidence 99999999986 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHhcCCChhHHHHHHHHHHHHhc
Q 011429 448 ALVFSFGAEVIERFPYPSIRNQVVSHVKNLMG 479 (486)
Q Consensus 448 LLv~gF~~evi~~ip~~~lr~~l~~~i~~~l~ 479 (486)
|||+||+.+++++||+ .+++++.+.|+..|+
T Consensus 397 LIV~GFl~evi~~lp~-e~~~el~~li~~~~~ 427 (429)
T 4dn7_A 397 MIIRGFLDVGIRGIPE-ELKEEIENTIAQTAL 427 (429)
T ss_dssp HHHHHHHHGGGTTSCG-GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhc
Confidence 9999999999999995 699999999987764
No 3
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=98.12 E-value=0.0028 Score=66.40 Aligned_cols=177 Identities=5% Similarity=0.009 Sum_probs=126.6
Q ss_pred EEEEEcCCceeeeeEEEEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEE
Q 011429 193 GVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKV 272 (486)
Q Consensus 193 ~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l 272 (486)
..|.|.+|.++. +.-.|.. .... ....+..+-|++++||+++++....- + ...++...+.+.++++|++
T Consensus 175 ~lIi~eegs~v~--iie~~~~-~~~~-----~~~~~~v~ei~v~~~A~l~~~~vq~~-~--~~~~~~~~~~~~~~~~a~~ 243 (435)
T 1vh4_A 175 HHLDLAEGAEAT--VIEHFVS-LNDA-----RHFTGARFTINVAANAHLQHIKLAFE-N--PLSHHFAHNDLLLAEDATA 243 (435)
T ss_dssp EEEEECTTCEEE--EEEEEEE-SSSS-----CEEEEEEEEEEECTTCEEEEEEEECC-C--TTCEEEEEEEEEECTTCEE
T ss_pred EEEEECCCCEEE--EEEEecc-CCcc-----cceeeeEEEEEECCCCEEEEEEEEec-C--CCeEEEEEEEEEECCCCEE
Confidence 568899998763 1112222 1110 12344456799999999999876543 2 2335666788999999999
Q ss_pred EEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEEC--CeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEE-
Q 011429 273 RHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTG--GKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL- 349 (486)
Q Consensus 273 ~~~~vq~~~~~~~~~~~~~v~~~~~s~~~~~~v~~G--g~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h- 349 (486)
++..+..-+.-+.+. ......+++|..++..+.++ ++..-....+.+.|+++.+++..-.+..++.+.-+...+..
T Consensus 244 ~~~~~~~G~~~~~~~-~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kgil~d~s~~vf~G~i~v~ 322 (435)
T 1vh4_A 244 FSHSFLLGGAVLRHN-TSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVA 322 (435)
T ss_dssp EEEEEECCCSEEEEE-EEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEECCceEEEe-eEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEEEEcCCCeEEEEEEEEEe
Confidence 999887654333332 23333588999888887764 44666677889999999999999999988888877777777
Q ss_pred -ecCCceeeEEEEEEEeCCCceEEEEEEEEEcc
Q 011429 350 -DHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381 (486)
Q Consensus 350 -~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~ 381 (486)
.+.+|.+.|..++++.+++|+..=.=.+.|..
T Consensus 323 ~~A~~t~a~~~~~~LlLs~~a~~~t~P~LeI~~ 355 (435)
T 1vh4_A 323 QHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYA 355 (435)
T ss_dssp TTCTTEEEEEEEEEEECSTTCEEEEEEEEEECC
T ss_pred cCCCCCeeEEEeeeEEccCCCcEEeeeeEEEEc
Confidence 56899999999999986678877666666663
No 4
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=98.07 E-value=0.0035 Score=65.50 Aligned_cols=177 Identities=14% Similarity=0.125 Sum_probs=124.5
Q ss_pred EEEEEcCCceeeeeEEEEEEEecCCCcCCCCCccccceEEEEeCCCCeEEEEEEeeecCCCcceeeeeEEEEEEcCCCEE
Q 011429 193 GVIYVPAGCKVENPIYLKYLSVEGGNVDSKKLPISNPRVVVLVEEGGEVGIIEEFVGKEGNDCYWANSVLEVVIGKGGKV 272 (486)
Q Consensus 193 ~~I~Vp~g~~~~~Pi~i~~~~~~~~~~~~~~~~~~~~r~lIvveega~~~iie~~~~~~~~~~~~~n~v~ei~v~~~A~l 272 (486)
..|.+.+|.++. +..-+....... ....+.-+-|++++||+++++....-. ...++...+.+.+++||++
T Consensus 183 ~lIi~eegA~v~--iie~c~~~~~~~-----~~lh~~v~Ei~v~~~A~l~~~~vq~~~---~~~~~~~~~~~~~~~~a~~ 252 (429)
T 4dn7_A 183 NIIIVEEGATLD--IITGCTTKKGVE-----EGLHLGISEMYIKKGGTLNFTMIHNWA---EQIGVRPRTVVSVEEGGTY 252 (429)
T ss_dssp EEEEECTTCEEE--EEEEEEECTTCC-----EEEEEEEEEEEECTTCEEEEEEEECCC---TEEEEEEEEEEEECTTCEE
T ss_pred EEEEECCCCEEE--EEEEecCCCCcc-----cceEEEEEEEEECCCCEEEEEEEeecC---CCcEEecceeEEECCCcEE
Confidence 578889998763 111122111110 023334467999999999998765432 2345667789999999999
Q ss_pred EEEEEEecCCCcEEEEeEEEE-EecCcEEEEEEEEE--CCeEEEEEEEEEEeCCCceEEEEEEEEecCCeEEEeEeEEEE
Q 011429 273 RHSYLQNQSLNAAHIKWTAVR-QETASGYELVEVST--GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLL 349 (486)
Q Consensus 273 ~~~~vq~~~~~~~~~~~~~v~-~~~~s~~~~~~v~~--Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~~~i~h 349 (486)
....+...+..... ....+. .+++|..++..+.+ |++.......+.+.|+++.+++..-.++. +.+.-+...|..
T Consensus 253 ~~~~v~~~g~~~~~-~~~~~~L~Ge~A~~~~~~v~l~~g~q~~D~~t~v~H~gp~t~S~i~~k~V~~-~s~~vfrG~I~~ 330 (429)
T 4dn7_A 253 VSNYICLKPVRSVQ-TYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITI-GGRLIARGEMIG 330 (429)
T ss_dssp EEEEEECSCCSEEE-ECCEEEECSTTCEEEEEEEEEECTTCEEEEEEEEEECSTTCEEEEEEEEEES-SSEEEEEEEEEE
T ss_pred EEEEEEecCceEEe-eeeeEEEecCCcEEEEEEEEecCCceEEEEEEEEEEecCCcEEEEEeeEEEe-ccEEEEeeeEec
Confidence 87777765544333 222333 46899877766654 56788888899999999999999999988 777777777887
Q ss_pred ecCCceeeEEEEEEEeCCCceEEEEEEEEEcc
Q 011429 350 DHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNR 381 (486)
Q Consensus 350 ~~p~~~S~~~~K~il~~d~s~~vF~G~I~V~~ 381 (486)
.+.+|.+.|..++++.+++++..=.=.+.|..
T Consensus 331 ~A~~t~~~q~~~~LLLsd~A~~~t~P~LeI~~ 362 (429)
T 4dn7_A 331 NAKGAKGHLECKGLVLTDKGSQLAIPILEANV 362 (429)
T ss_dssp CSTTEEEEEEEEEEECSSSCEEEEEEEEEECS
T ss_pred CCcCceeEEEeeeEEecCCceEEeeeEEEEEc
Confidence 88899999999999986778876666666653
No 5
>3sf5_B Urease accessory protein UREH; UREF, chaperone; 2.50A {Helicobacter pylori}
Probab=65.44 E-value=40 Score=32.38 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=51.7
Q ss_pred cceEEEEeCCCCeEEEEEEeeecC-CCcceeeeeEEEEEEcCCCEEEEEEEEec-CCCcEEEEeEEEEEecCcEEEEEEE
Q 011429 228 NPRVVVLVEEGGEVGIIEEFVGKE-GNDCYWANSVLEVVIGKGGKVRHSYLQNQ-SLNAAHIKWTAVRQETASGYELVEV 305 (486)
Q Consensus 228 ~~r~lIvveega~~~iie~~~~~~-~~~~~~~n~v~ei~v~~~A~l~~~~vq~~-~~~~~~~~~~~v~~~~~s~~~~~~v 305 (486)
..++-|.+++||++.|...-...- ..........+++.|++||.|+|.=-..- -.++.....+.+.+.++|++-+..+
T Consensus 62 ~l~i~i~v~~ga~~~ltTqaatkvy~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~a~~~~~~~v~L~~~A~l~~~e~ 141 (265)
T 3sf5_B 62 AQDVQLNIGPNCKLRITSQSFEKIHNTEDGFASRDMHIVVGENAFLDFAPFPLIPFENAHFKGNTTISLRSSSQLLYSEI 141 (265)
T ss_dssp EEEEEEEECTTCEEEEECCCCEEECCCTTSCEEEEEEEEECTTCEEEECCCCEEECTTCEEEEEEEEEECTTCEEEEEEE
T ss_pred EEEEEEEECCCCEEEEECcccceEEcCCCCcEEEEEEEEECCCCEEEecCCCcEecCCCEEEEEEEEEECCCCEEEEEEe
Confidence 446789999999998865322110 01122345678899999999997521111 2344556677788888888776665
Q ss_pred EECCe
Q 011429 306 STGGK 310 (486)
Q Consensus 306 ~~Gg~ 310 (486)
..-|+
T Consensus 142 ~~~GR 146 (265)
T 3sf5_B 142 IVAGR 146 (265)
T ss_dssp EECSC
T ss_pred eecCc
Confidence 54443
No 6
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=57.24 E-value=8.2 Score=29.03 Aligned_cols=31 Identities=32% Similarity=0.140 Sum_probs=27.5
Q ss_pred eccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 423 AISDLEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 423 TvG~iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
--|+.|++.+.-|++.|++++.|++.|....
T Consensus 4 ~~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~ 34 (64)
T 2crn_A 4 GSSGSSPSLLEPLLAMGFPVHTALKALAATG 34 (64)
T ss_dssp SSCCCSCSSHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4578899999999999999999999998653
No 7
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=50.85 E-value=13 Score=30.54 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=24.0
Q ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHHh
Q 011429 433 FYFQARGIDLETARKALVFSFGAEVIE 459 (486)
Q Consensus 433 FYL~SRGI~~~eA~~LLv~gF~~evi~ 459 (486)
-|-++.|+++++|...|+.||-.|+-+
T Consensus 63 a~a~~~~~s~~eal~rI~egF~~El~~ 89 (101)
T 3ic3_A 63 SYARESEYTEDEALERIVEMFEAELSR 89 (101)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 477999999999999999999988654
No 8
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.65 E-value=15 Score=25.55 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=26.0
Q ss_pred eccCCChhhHHHHHhcCCCHHHHHHHHHHh
Q 011429 423 AISDLEESQLFYFQARGIDLETARKALVFS 452 (486)
Q Consensus 423 TvG~iDeeqLFYL~SRGI~~~eA~~LLv~g 452 (486)
+-..+|++.+--|++-|++++.|++.|...
T Consensus 4 ~~~~~~~~~v~~L~~MGF~~~~a~~AL~~~ 33 (47)
T 2ekk_A 4 GSSGVNQQQLQQLMDMGFTREHAMEALLNT 33 (47)
T ss_dssp CCCSSCHHHHHHHHHHHCCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 345789999999999999999999988764
No 9
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=42.41 E-value=15 Score=24.88 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=22.7
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 428 EESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 428 DeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
+++.+--|++-|+++++|++.|-...
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~~ 29 (43)
T 2g3q_A 4 KSLAVEELSGMGFTEEEAHNALEKCN 29 (43)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 68899999999999999999887643
No 10
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.22 E-value=30 Score=25.83 Aligned_cols=29 Identities=28% Similarity=0.166 Sum_probs=25.9
Q ss_pred cCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 425 SDLEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 425 G~iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
..+|++.|--|++-|++++.|++.|...+
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~ 34 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTG 34 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 36899999999999999999999998664
No 11
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.89 E-value=21 Score=27.55 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=25.8
Q ss_pred CCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 426 DLEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 426 ~iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
.+|++.|--|++.|++++.|++.|....
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~ 34 (74)
T 2dag_A 7 GLDESVIIQLVEMGFPMDACRKAVYYTG 34 (74)
T ss_dssp SSCHHHHHHHHHHSCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 5899999999999999999999998765
No 12
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.89 E-value=25 Score=26.03 Aligned_cols=29 Identities=24% Similarity=0.121 Sum_probs=26.0
Q ss_pred cCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 425 SDLEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 425 G~iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
...|++.+--|++-|+++++|++.|....
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~ 34 (63)
T 2dak_A 6 SGPPEDCVTTIVSMGFSRDQALKALRATN 34 (63)
T ss_dssp CCCCHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 36899999999999999999999988754
No 13
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.84 E-value=32 Score=25.59 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.6
Q ss_pred CCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 426 DLEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 426 ~iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
..|++.|--|++.|+++++|++.|....
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~ 34 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNG 34 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4799999999999999999998877654
No 14
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.57 E-value=17 Score=25.63 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=26.1
Q ss_pred ccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 424 ISDLEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 424 vG~iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
.|.-+++++--|++-|+++++|+..|-..+
T Consensus 4 ~~~~~~~~i~~L~~MGF~~~~a~~AL~~~~ 33 (49)
T 1ify_A 4 TGSEYETMLTEIMSMGYERERVVAALRASY 33 (49)
T ss_dssp CSHHHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred CCccCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 466688999999999999999999987655
No 15
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.83 E-value=27 Score=26.06 Aligned_cols=27 Identities=26% Similarity=0.117 Sum_probs=24.3
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 427 LEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 427 iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
.|++.+--|++-|++++.|++.|....
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~ 44 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTG 44 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 688999999999999999999988654
No 16
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=31.24 E-value=42 Score=24.44 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.6
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHh
Q 011429 428 EESQLFYFQARGIDLETARKALVFS 452 (486)
Q Consensus 428 DeeqLFYL~SRGI~~~eA~~LLv~g 452 (486)
-|+++--|||-|+++++|++-|..+
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia 31 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIA 31 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3678899999999999999988654
No 17
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=30.83 E-value=39 Score=22.07 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.4
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHHh
Q 011429 429 ESQLFYFQARGIDLETARKALVFS 452 (486)
Q Consensus 429 eeqLFYL~SRGI~~~eA~~LLv~g 452 (486)
++++--|++.|+++++|+..|...
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 568888999999999999887654
No 18
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.60 E-value=44 Score=26.37 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=26.3
Q ss_pred ccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 424 ISDLEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 424 vG~iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
.-..|++.+--|++-|++++.|++.|....
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~ 54 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTS 54 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHc
Confidence 346799999999999999999999987664
No 19
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=28.43 E-value=46 Score=24.19 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=19.9
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHH
Q 011429 428 EESQLFYFQARGIDLETARKALVF 451 (486)
Q Consensus 428 DeeqLFYL~SRGI~~~eA~~LLv~ 451 (486)
-+.++=||+|.||+.+|-..+|-+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 356788999999999998887754
No 20
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.35 E-value=50 Score=25.27 Aligned_cols=30 Identities=33% Similarity=0.296 Sum_probs=26.3
Q ss_pred ccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 424 ISDLEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 424 vG~iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
..++|++++--|++-|+++++|++.|....
T Consensus 25 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~ 54 (73)
T 1wiv_A 25 TSDIDQSSVDTLLSFGFAEDVARKALKASG 54 (73)
T ss_dssp SCSSCHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 347899999999999999999999887654
No 21
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=26.36 E-value=54 Score=22.95 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.7
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHHh
Q 011429 429 ESQLFYFQARGIDLETARKALVFS 452 (486)
Q Consensus 429 eeqLFYL~SRGI~~~eA~~LLv~g 452 (486)
++.+=-|+|-|.++++|++-|..+
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia 28 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIA 28 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567788999999999999988754
No 22
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.22 E-value=47 Score=26.19 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.4
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHhh
Q 011429 427 LEESQLFYFQARGIDLETARKALVFSF 453 (486)
Q Consensus 427 iDeeqLFYL~SRGI~~~eA~~LLv~gF 453 (486)
+|++.+--|++-|++++.|++.|....
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~ 54 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNH 54 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 699999999999999999999987653
No 23
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=23.27 E-value=73 Score=22.94 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=21.8
Q ss_pred CCChhhHHHHHhcCCCHHHHHHHHHHh
Q 011429 426 DLEESQLFYFQARGIDLETARKALVFS 452 (486)
Q Consensus 426 ~iDeeqLFYL~SRGI~~~eA~~LLv~g 452 (486)
.++ +++=-||+-|+|+++|.+.|..+
T Consensus 10 ~~~-~~Ia~Lm~mGFsr~~ai~AL~~a 35 (52)
T 2ooa_A 10 NVD-AKIAKLMGEGYAFEEVKRALEIA 35 (52)
T ss_dssp -CH-HHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ChH-HHHHHHHHcCCCHHHHHHHHHHh
Confidence 455 89999999999999999988654
No 24
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=20.39 E-value=88 Score=23.92 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=20.8
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHh
Q 011429 428 EESQLFYFQARGIDLETARKALVFS 452 (486)
Q Consensus 428 DeeqLFYL~SRGI~~~eA~~LLv~g 452 (486)
-+.++=||+|.||+.+|-..+|-++
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3577889999999999988887663
Done!