BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011430
         (486 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RB7|A Chain A, Crystal Structure Of Cbd12 From Calx1.2
 pdb|3RB7|B Chain B, Crystal Structure Of Cbd12 From Calx1.2
 pdb|3RB7|E Chain E, Crystal Structure Of Cbd12 From Calx1.2
 pdb|3RB7|G Chain G, Crystal Structure Of Cbd12 From Calx1.2
          Length = 298

 Score = 32.0 bits (71), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 110 EESSMDLDLDFTLHLGNDKMPNPKKSAYSNMKGVELQPKVDL 151
           EESS + D+ F +H+G  ++  P  + Y  +K VE +P  DL
Sbjct: 196 EESSYEKDVSFKVHIGEPRLA-PDSTHYPKIKEVEKKPVQDL 236


>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
           RECEPTOR IN AN Extended Conformation
          Length = 440

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 296 QKLGCHKGAEGRTVYCKAHGGGRRCEYLGCTKSAEGRTDYCIAHGGGRRCSHEGCTRAAR 355
            K  CH G E  T+  K     R C         E  T+ C+ + GG  CSH  C     
Sbjct: 5   NKFKCHSG-ECITLD-KVCNMARDCRDWSDEPIKECGTNECLDNNGG--CSH-VCNDLKI 59

Query: 356 GKSGLC---IRHGGGKRCQKENCTKSAEGLSGLCISHGGGRRCQASGCTKGAQGS--TMF 410
           G   LC    +    +RC+  +  +  +  S LC++  GG +CQ   C +G Q    T  
Sbjct: 60  GYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ---CEEGFQLDPHTKA 116

Query: 411 CKAHG 415
           CKA G
Sbjct: 117 CKAVG 121


>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
          Length = 699

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 297 KLGCHKGAEGRTVYCKAHGGGRRCEYLGCTKSAEGRTDYCIAHGGGRRCSHEGCTRAARG 356
           K  CH G E  T+  K     R C         E  T+ C+ + GG  CSH  C     G
Sbjct: 260 KFKCHSG-ECITLD-KVCNMARDCRDWSDEPIKECGTNECLDNNGG--CSH-VCNDLKIG 314

Query: 357 KSGLC---IRHGGGKRCQKENCTKSAEGLSGLCISHGGGRRCQASGCTKGAQGS--TMFC 411
              LC    +    +RC+  +  +  +  S LC++  GG +CQ   C +G Q    T  C
Sbjct: 315 YECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ---CEEGFQLDPHTKAC 371

Query: 412 KAHG 415
           KA G
Sbjct: 372 KAVG 375


>pdb|3ML4|A Chain A, Crystal Structure Of A Complex Between Dok7 Ph-Ptb And The
           Musk Juxtamembrane Region
 pdb|3ML4|B Chain B, Crystal Structure Of A Complex Between Dok7 Ph-Ptb And The
           Musk Juxtamembrane Region
 pdb|3ML4|C Chain C, Crystal Structure Of A Complex Between Dok7 Ph-Ptb And The
           Musk Juxtamembrane Region
 pdb|3ML4|D Chain D, Crystal Structure Of A Complex Between Dok7 Ph-Ptb And The
           Musk Juxtamembrane Region
          Length = 224

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 16/79 (20%)

Query: 161 ESGITSLHPSSSLLHFGMEMPLLAGGTLNADD--------------GSTSCGWKTGVSLP 206
           ESG  +LH  + +L    ++P    G     D              G T CG+  GV   
Sbjct: 129 ESGPATLHLCNDILVLARDIPPTVXGQWKLSDLRRYGAVPNGFIFEGGTRCGYWAGVFF- 187

Query: 207 PLQTAPNKESRFFFDCALR 225
            L +A  ++  F FDC +R
Sbjct: 188 -LSSAEGEQXSFLFDCIVR 205


>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
           Ldl Receptor
          Length = 791

 Score = 30.8 bits (68), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 297 KLGCHKGAEGRTVYCKAHGGGRRCEYLGCTKSAEGRTDYCIAHGGGRRCSHEGCTRAARG 356
           K  CH G E  T+  K     R C         E  T+ C+ + GG  CSH  C     G
Sbjct: 278 KFKCHSG-ECITLD-KVCNMARDCRDWSDEPIKECGTNECLDNNGG--CSH-VCNDLKIG 332

Query: 357 KSGLC---IRHGGGKRCQKENCTKSAEGLSGLCISHGGGRRCQASGCTKGAQGS--TMFC 411
              LC    +    +RC+  +  +  +  S LC++  GG +CQ   C +G Q    T  C
Sbjct: 333 YECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ---CEEGFQLDPHTKAC 389

Query: 412 KAHG 415
           KA G
Sbjct: 390 KAVG 393


>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
           RECEPTOR IN AN Extended Conformation
          Length = 400

 Score = 29.6 bits (65), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 336 CIAHGGGRRCSHEGCTRAARGKSGLC---IRHGGGKRCQKENCTKSAEGLSGLCISHGGG 392
           C+ + GG  CSH  C     G   LC    +    +RC+  +  +  +  S LC++  GG
Sbjct: 3   CLDNNGG--CSH-VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 59

Query: 393 RRCQASGCTKGAQGS--TMFCKAHG 415
            +CQ   C +G Q    T  CKA G
Sbjct: 60  YKCQ---CEEGFQLDPHTKACKAVG 81


>pdb|4GAC|A Chain A, High Resolution Structure Of Mouse Aldehyde Reductase
           (akr1a4) In Its Apo-form
 pdb|4GAC|B Chain B, High Resolution Structure Of Mouse Aldehyde Reductase
           (akr1a4) In Its Apo-form
          Length = 324

 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 170 SSSLLHFGMEMPLLAGGTLNADDGSTSCGWKTGVS 204
           SS LLH G +MPL+  GT  ++ G      K  +S
Sbjct: 3   SSVLLHTGQKMPLIGLGTWKSEPGQVKAAIKHALS 37


>pdb|3RB5|A Chain A, Crystal Structure Of Calcium Binding Domain Cbd12 Of
           Calx1.1
 pdb|3RB5|B Chain B, Crystal Structure Of Calcium Binding Domain Cbd12 Of
           Calx1.1
          Length = 298

 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 110 EESSMDLDLDFTLHLGNDKMPNPKKSAYSNMKGVELQPKVDL 151
           EESS + D+ F +H+G  ++  P     + +K VE +P  DL
Sbjct: 196 EESSYEKDVSFKVHIGEPRLA-PDDELAAKIKEVEKKPVQDL 236


>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
           Complexed With Ppack
          Length = 98

 Score = 28.5 bits (62), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 284 GRCISHGGGRRCQKLGCHKGAEGRTVYCKAHGGGRRCEYLGCTKSAEGRTDYCIAHGGGR 343
           G CI   G   C    C  G EGR  +C+     R   +L C+    G T YC+   G R
Sbjct: 19  GTCIDGIGSFSCD---CRSGWEGR--FCQ-----REVSFLNCSLDNGGCTHYCLEEVGWR 68

Query: 344 RCS 346
           RCS
Sbjct: 69  RCS 71


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,194,054
Number of Sequences: 62578
Number of extensions: 595711
Number of successful extensions: 1331
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 54
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)