Query 011430
Match_columns 486
No_of_seqs 220 out of 501
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 01:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13891 zf-C3Hc3H: Potential 49.7 13 0.00027 30.2 2.1 19 396-414 5-23 (65)
2 PF13891 zf-C3Hc3H: Potential 47.4 14 0.00031 29.9 2.1 50 419-468 1-64 (65)
3 PRK07217 replication factor A; 13.4 95 0.0021 32.8 1.3 24 340-365 186-209 (311)
4 PF12065 DUF3545: Protein of u 12.5 70 0.0015 26.3 -0.0 15 54-68 18-32 (59)
5 PRK07217 replication factor A; 12.4 1.2E+02 0.0025 32.2 1.5 22 392-415 188-209 (311)
6 KOG2236 Uncharacterized conser 11.1 3.4E+02 0.0074 30.5 4.5 73 120-196 166-239 (483)
7 PF15506 OCC1: OCC1 family 8.6 2.4E+02 0.0052 23.2 1.7 32 81-117 2-33 (62)
8 PF01561 Hanta_G2: Hantavirus 6.5 3.5E+02 0.0075 30.2 2.3 37 115-156 22-58 (485)
9 KOG1226 Integrin beta subunit 6.1 1.3E+03 0.029 27.6 6.7 14 116-129 207-220 (783)
10 KOG1160 Fe-S oxidoreductase [E 5.6 3.5E+02 0.0077 30.6 1.8 26 312-340 250-275 (601)
No 1
>PF13891 zf-C3Hc3H: Potential DNA-binding domain
Probab=49.72 E-value=13 Score=30.17 Aligned_cols=19 Identities=26% Similarity=0.695 Sum_probs=8.8
Q ss_pred cCCCCCccccccccccccc
Q 011430 396 QASGCTKGAQGSTMFCKAH 414 (486)
Q Consensus 396 ~~pGCtK~Aqgs~g~C~aH 414 (486)
...+|...|.-...||+.|
T Consensus 5 ~~~~C~~~~lp~~~yC~~H 23 (65)
T PF13891_consen 5 SGRGCSQPALPGSKYCIRH 23 (65)
T ss_pred CCCCcCcccCchhhHHHHH
Confidence 4444544444334455555
No 2
>PF13891 zf-C3Hc3H: Potential DNA-binding domain
Probab=47.44 E-value=14 Score=29.86 Aligned_cols=50 Identities=26% Similarity=0.651 Sum_probs=36.6
Q ss_pred cC--CCCCCCCCccCCcCcccccCC-------CCcccc--CCCCccccccccc---cccccccC
Q 011430 419 RC--TAPGCTKGAEGSTSFCKGHGG-------GKRCAF--QGGGVCTKSVHGG---TNFCVAHG 468 (486)
Q Consensus 419 RC--~~~GCtK~A~gs~g~C~~HGG-------GKRC~~--~G~g~C~Ksa~gg---~~~C~aHG 468 (486)
+| ...+|...+.....||+.|=- -+.|.+ .++-.|.+.+... ..+|..|-
T Consensus 1 ~C~~~~~~C~~~~lp~~~yC~~HIl~D~~Q~Lf~~C~~~~~~~~~C~~Pv~~~~~~~~~C~~H~ 64 (65)
T PF13891_consen 1 KCTYSGRGCSQPALPGSKYCIRHILEDPNQPLFKQCSYVFSNGKRCQNPVLKSENEPPLCPEHA 64 (65)
T ss_pred CCCCCCCCcCcccCchhhHHHHHhccCCCCCCcccCcCccCCCCcCCCcccccCCCCCcChhhc
Confidence 47 789999999878899999943 268876 3334588877543 35898883
No 3
>PRK07217 replication factor A; Reviewed
Probab=13.45 E-value=95 Score=32.83 Aligned_cols=24 Identities=46% Similarity=0.947 Sum_probs=18.5
Q ss_pred CCccccccCCcccccccCCCcccccC
Q 011430 340 GGGRRCSHEGCTRAARGKSGLCIRHG 365 (486)
Q Consensus 340 GGGrrCs~~GCtk~Ar~r~G~C~~HG 365 (486)
|.-+||-.+||.|.-+ .|.|..||
T Consensus 186 glI~rCP~~~C~Rvl~--~g~C~~HG 209 (311)
T PRK07217 186 GLIKRCPEEDCTRVLQ--NGRCSEHG 209 (311)
T ss_pred CCeecCCccccCcccc--CCCCCCCC
Confidence 4458888888988775 48888887
No 4
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=12.50 E-value=70 Score=26.32 Aligned_cols=15 Identities=53% Similarity=0.729 Sum_probs=11.9
Q ss_pred ccccccccccccccC
Q 011430 54 SASKGIKRKWSLIDG 68 (486)
Q Consensus 54 ~~~~~~krk~~~~~~ 68 (486)
+-+|..||||-.|.-
T Consensus 18 sr~k~~KRKWREIEA 32 (59)
T PF12065_consen 18 SRSKPKKRKWREIEA 32 (59)
T ss_pred ccCCccchhHHHHHH
Confidence 456889999998754
No 5
>PRK07217 replication factor A; Reviewed
Probab=12.44 E-value=1.2e+02 Score=32.22 Aligned_cols=22 Identities=36% Similarity=0.718 Sum_probs=14.4
Q ss_pred cccccCCCCCcccccccccccccC
Q 011430 392 GRRCQASGCTKGAQGSTMFCKAHG 415 (486)
Q Consensus 392 GrRC~~pGCtK~Aqgs~g~C~aHG 415 (486)
=+||-.+||.+.-+ .+.|..||
T Consensus 188 I~rCP~~~C~Rvl~--~g~C~~HG 209 (311)
T PRK07217 188 IKRCPEEDCTRVLQ--NGRCSEHG 209 (311)
T ss_pred eecCCccccCcccc--CCCCCCCC
Confidence 35777777777654 36677776
No 6
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=11.13 E-value=3.4e+02 Score=30.46 Aligned_cols=73 Identities=16% Similarity=0.076 Sum_probs=37.3
Q ss_pred eeeeecCCCCCCCCCccccccc-cccCCCceeEEEeeccCCCCCCccccCCCCcccccCceeeeccCCccccCCCCCc
Q 011430 120 FTLHLGNDKMPNPKKSAYSNMK-GVELQPKVDLVLSLSTGSPESGITSLHPSSSLLHFGMEMPLLAGGTLNADDGSTS 196 (486)
Q Consensus 120 f~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~l~lsls~~~~es~~t~~~~~~~~~~~~~~~~~~~~~~~~~degsts 196 (486)
|.=..++|....-++...-+.. .-++.|..-|+|.|. +-..|+-+-+.+..+...+++-.++. ..++||++.=
T Consensus 166 ~dddd~~e~~s~~~p~ktr~e~ll~elPpv~~~~i~l~---e~~~~~plG~V~svv~~~VII~s~~~-~~vlde~Svl 239 (483)
T KOG2236|consen 166 FDDDDVKEDRSPSKPQKTRNEHLLDELPPVEPEEITLE---EKGELLPLGKVSSVVDQQVIIESTCN-KEVLDEDSVL 239 (483)
T ss_pred ccccccccccccccCCCCCCchhhhcCCCCCccceeec---CCcceechhHHHHHhhhceEEEeccC-cccccccceE
Confidence 4444555555443332222222 233444234444443 44566666666666665544444433 6788999875
No 7
>PF15506 OCC1: OCC1 family
Probab=8.59 E-value=2.4e+02 Score=23.23 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=19.3
Q ss_pred ccCCCCCCCCCcccccccccccCcccccCcccccccc
Q 011430 81 GLGRPSSSSDSKGSSATACTTTSSAKENEEESSMDLD 117 (486)
Q Consensus 81 ~lg~s~ss~~sk~s~~t~c~~~ss~k~~~~~ss~d~~ 117 (486)
|-|||.-.|.-.+--+ .-++|+.-|||+||=+
T Consensus 2 GCGNSTA~sa~ag~Gp-----~ga~KD~~~~S~~ddd 33 (62)
T PF15506_consen 2 GCGNSTATSAGAGRGP-----AGAAKDVTEDSITDDD 33 (62)
T ss_pred CccccccccccCCCCC-----ccccccccccccchhh
Confidence 5566654433222222 3458999999998754
No 8
>PF01561 Hanta_G2: Hantavirus glycoprotein G2; InterPro: IPR002532 The medium (M) genome segment of Hantaviruses (family Bunyaviridae) encodes the two virion glycoproteins [], G1 and G2, as a polyprotein precursor. This entry represents the polyprotein region which forms the G2 glycoprotein.; GO: 0030683 evasion by virus of host immune response, 0044423 virion part
Probab=6.54 E-value=3.5e+02 Score=30.23 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=19.6
Q ss_pred ccccceeeeecCCCCCCCCCccccccccccCCCceeEEEeec
Q 011430 115 DLDLDFTLHLGNDKMPNPKKSAYSNMKGVELQPKVDLVLSLS 156 (486)
Q Consensus 115 d~~l~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~lsls 156 (486)
||||||.|--...-+-+.+-.. +...+.++.+.|.|+
T Consensus 22 DlELDFSL~SSS~yTYrR~L~n-----P~n~~~~i~fh~~i~ 58 (485)
T PF01561_consen 22 DLELDFSLPSSSKYTYRRKLVN-----PANEEQSIPFHIQIE 58 (485)
T ss_pred ceeEeeeecCCCccchhhhcCC-----CCCccceeEEEEEEe
Confidence 8999988754433332221111 233344677777776
No 9
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=6.15 E-value=1.3e+03 Score=27.60 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=6.5
Q ss_pred cccceeeeecCCCC
Q 011430 116 LDLDFTLHLGNDKM 129 (486)
Q Consensus 116 ~~l~f~~~~~~~~~ 129 (486)
+++-..|.|=|+..
T Consensus 207 fgfkhvLsLT~~~~ 220 (783)
T KOG1226|consen 207 FGFKHVLSLTNDAE 220 (783)
T ss_pred cccceeeecCCChH
Confidence 44444555544443
No 10
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=5.62 E-value=3.5e+02 Score=30.57 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=16.9
Q ss_pred cccCCccccccCCCCccccCCcccccccC
Q 011430 312 KAHGGGRRCEYLGCTKSAEGRTDYCIAHG 340 (486)
Q Consensus 312 ~aHGGGRrC~~pGCtK~A~grtgfC~aHG 340 (486)
-.|.|-+.|++ ||+.....|+|..|-
T Consensus 250 GSHSGVKiCRW---TKs~lRGrG~CYK~s 275 (601)
T KOG1160|consen 250 GSHSGVKICRW---TKSELRGRGGCYKHS 275 (601)
T ss_pred eccCCeeeeee---chHHhccCCceeeee
Confidence 35777778877 566643346777774
Done!