Query 011430
Match_columns 486
No_of_seqs 220 out of 501
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 07:59:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011430.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011430hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2glia4 g.37.1.1 (A:198-228) F 18.0 16 0.0011 23.8 0.5 10 269-278 4-13 (31)
2 d1zfda_ g.37.1.1 (A:) SWI5 zin 10.8 43 0.0031 21.4 1.1 10 472-481 5-14 (32)
3 d1ubdc4 g.37.1.1 (C:381-408) Y 10.2 57 0.0041 20.3 1.5 11 268-278 3-13 (28)
4 d1a1ia1 g.37.1.1 (A:103-131) Z 9.9 42 0.003 21.0 0.8 11 319-329 4-14 (29)
5 d1tf3a2 g.37.1.1 (A:41-70) Tra 9.2 45 0.0033 21.2 0.8 11 269-279 4-14 (30)
6 d2glia3 g.37.1.1 (A:168-197) F 8.0 79 0.0057 19.8 1.5 10 269-278 4-13 (30)
7 d2glia5 g.37.1.1 (A:229-257) F 7.9 57 0.0042 20.8 0.8 11 394-404 4-14 (29)
8 d1ubdc3 g.37.1.1 (C:351-380) Y 7.7 57 0.0042 20.4 0.8 11 319-329 4-14 (30)
9 d2j7ja2 g.37.1.1 (A:29-57) Tra 7.6 57 0.0041 20.6 0.7 10 472-481 5-14 (29)
10 d2dlka1 g.37.1.1 (A:8-37) Zinc 7.6 65 0.0048 20.4 1.0 9 270-278 3-11 (30)
No 1
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.96 E-value=16 Score=23.82 Aligned_cols=10 Identities=50% Similarity=1.212 Sum_probs=4.9
Q ss_pred CccCCCCCCC
Q 011430 269 TCQVEGCGKG 278 (486)
Q Consensus 269 ~C~~pGC~K~ 278 (486)
.|.+|||.|.
T Consensus 4 ~C~~~gC~Ka 13 (31)
T d2glia4 4 MCEHEGCSKA 13 (31)
T ss_dssp ECCSTTCCCE
T ss_pred cccCCChhhh
Confidence 3555555543
No 2
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.78 E-value=43 Score=21.38 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=7.3
Q ss_pred ccCCCCCCcc
Q 011430 472 RCAVPECTKS 481 (486)
Q Consensus 472 RCs~~GC~K~ 481 (486)
.|.+|||.|.
T Consensus 5 ~C~~pgC~k~ 14 (32)
T d1zfda_ 5 SCDHPGCDKA 14 (32)
T ss_dssp CCCCTTCCCC
T ss_pred ECcCCCCCCe
Confidence 4778888775
No 3
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.19 E-value=57 Score=20.32 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=6.3
Q ss_pred CCccCCCCCCC
Q 011430 268 KTCQVEGCGKG 278 (486)
Q Consensus 268 k~C~~pGC~K~ 278 (486)
..|.+|||.|.
T Consensus 3 f~C~~~gC~K~ 13 (28)
T d1ubdc4 3 YVCPFDGCNKK 13 (28)
T ss_dssp CCCCSTTCCCC
T ss_pred cCCCCCCcCCc
Confidence 35666666654
No 4
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.85 E-value=42 Score=21.04 Aligned_cols=11 Identities=18% Similarity=0.564 Sum_probs=6.9
Q ss_pred ccccCCCCccc
Q 011430 319 RCEYLGCTKSA 329 (486)
Q Consensus 319 rC~~pGCtK~A 329 (486)
.|.+|||.|.-
T Consensus 4 ~C~~~gC~k~F 14 (29)
T d1a1ia1 4 ACPVESCDRRF 14 (29)
T ss_dssp ECCSTTCCCEE
T ss_pred ECCCCCCCcEE
Confidence 46777776643
No 5
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=9.24 E-value=45 Score=21.21 Aligned_cols=11 Identities=55% Similarity=1.198 Sum_probs=7.8
Q ss_pred CccCCCCCCCc
Q 011430 269 TCQVEGCGKGA 279 (486)
Q Consensus 269 ~C~~pGC~K~a 279 (486)
.|.++||.|.-
T Consensus 4 pc~~egc~kgf 14 (30)
T d1tf3a2 4 PCKEEGCEKGF 14 (30)
T ss_dssp ECCCSSCCCEE
T ss_pred Ccccccccccc
Confidence 47788887754
No 6
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.96 E-value=79 Score=19.78 Aligned_cols=10 Identities=50% Similarity=1.198 Sum_probs=5.5
Q ss_pred CccCCCCCCC
Q 011430 269 TCQVEGCGKG 278 (486)
Q Consensus 269 ~C~~pGC~K~ 278 (486)
+|.+|||.|.
T Consensus 4 ~C~~~gCgk~ 13 (30)
T d2glia3 4 KCTFEGCRKS 13 (30)
T ss_dssp CCCSTTCCCC
T ss_pred eCCCCCCCce
Confidence 4555555554
No 7
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.86 E-value=57 Score=20.81 Aligned_cols=11 Identities=45% Similarity=0.933 Sum_probs=7.4
Q ss_pred cccCCCCCccc
Q 011430 394 RCQASGCTKGA 404 (486)
Q Consensus 394 RC~~pGCtK~A 404 (486)
.|+++||.|.-
T Consensus 4 ~Ck~~gC~K~Y 14 (29)
T d2glia5 4 VCKLPGCTKRY 14 (29)
T ss_dssp ECCSTTTCCEE
T ss_pred ecccCCCCccc
Confidence 47777777754
No 8
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.74 E-value=57 Score=20.39 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=6.7
Q ss_pred ccccCCCCccc
Q 011430 319 RCEYLGCTKSA 329 (486)
Q Consensus 319 rC~~pGCtK~A 329 (486)
.|.++||.|.-
T Consensus 4 ~C~~~gCgk~F 14 (30)
T d1ubdc3 4 QCTFEGCGKRF 14 (30)
T ss_dssp ECCSTTCCCEE
T ss_pred cCCCCCCCceE
Confidence 46666666643
No 9
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=7.62 E-value=57 Score=20.65 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=6.9
Q ss_pred ccCCCCCCcc
Q 011430 472 RCAVPECTKS 481 (486)
Q Consensus 472 RCs~~GC~K~ 481 (486)
.|.++||.|.
T Consensus 5 ~c~hegcdk~ 14 (29)
T d2j7ja2 5 ECPHEGCDKR 14 (29)
T ss_dssp ECCSTTCCCE
T ss_pred cCCccCcccc
Confidence 4777777764
No 10
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.59 E-value=65 Score=20.37 Aligned_cols=9 Identities=44% Similarity=1.291 Sum_probs=5.0
Q ss_pred ccCCCCCCC
Q 011430 270 CQVEGCGKG 278 (486)
Q Consensus 270 C~~pGC~K~ 278 (486)
|.||||.|.
T Consensus 3 cdf~gc~ki 11 (30)
T d2dlka1 3 CDFPGCGRI 11 (30)
T ss_dssp CSSTTTCCE
T ss_pred CCCCCchhh
Confidence 555666553
Done!