BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011431
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 99/159 (62%), Gaps = 4/159 (2%)
Query: 21 KHDVFVTFSGEDIRENFGSYLFAALFRESVKTFRDE-QIRRGDEIMPALLQAIEESKISL 79
+++VF++F G D RE F +L+ +L R + TFRD+ ++ +G EI P LL+AI++SKI +
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 80 VIFSKRFAFSRWCLEELVKIIECNK--LYQTVIPVFYKVLPSDVRNQLGSFGEAFLEHEK 137
I S +A S+WCL EL +I+ + + ++P+FY V PSDVR+Q G + +AF +H
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 138 SHDLRPKVGRWRDALREASDLAGWDSNVTRPESKLTDEI 176
D + + W+DAL++ DL GW + + D++
Sbjct: 155 KFDGQ-TIQNWKDALKKVGDLKGWHIGKNDKQGAIADKV 192
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 5/172 (2%)
Query: 21 KHDVFVTFSGEDIRENFGSYLFAALFRESVKTFRDE-QIRRGDEIMPALLQAIEESKISL 79
K+DVF++F G D R NF S+L+ L R S++TF+D+ ++ G P L IE S+ ++
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 80 VIFSKRFAFSRWCLEELVKIIECNKLYQ-TVIPVFYKVLPSDVRNQLGSFGEAFLEHEKS 138
V+ S+ +A S WCL+ELV I++ K TV+P+FY V P+ VR Q G E F +H
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127
Query: 139 HDLRPKVGRWRDALREASDLAGWDSNVTRPESKLTDEIVNGVVENLKSFAEL 190
D KV +WR AL + L+G S +SKL D+I N + +A +
Sbjct: 128 EDPE-KVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEISNKKTIYATI 176
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 22 HDVFVTFSGEDIRENFGSYLFAALFRESVKTFRDE-QIRRGDEIMPALLQAIEESKISLV 80
HD+F++ + ED + +F L L + + D+ +R GD + ++ + + S+ +V
Sbjct: 21 HDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIV 79
Query: 81 IFSKRFAFSRWCLEELVKIIECNKLYQT-VIPVFYKVLPSDVRNQLGSF 128
+ S F W +EL + + ++ ++P+++KV ++++ SF
Sbjct: 80 VLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKV----SKDEVASF 124
>pdb|3JUB|A Chain A, Human Gamma-Glutamylamine Cyclotransferase
pdb|3JUC|A Chain A, Human Gamma-Glutamylamine Cyclotransferase Complex With 5-
Oxoproline
Length = 153
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 267 EGEVKKLDQRLLRFLESVDKHVASYDR 293
EGEV +D+R+LRFL+ + A Y R
Sbjct: 64 EGEVYAVDERMLRFLDDFESCPALYQR 90
>pdb|2JFR|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis In Complex With Phosphate At
0.83 A Resolution
pdb|2JFS|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis In Complex With Cacodylate
pdb|2JFT|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis In Complex With Sulfate
pdb|2V06|A Chain A, Crystal Structure Of The Ppm Ser-Thr Phosphatase Mspp From
Mycobacterium Smegmatis At Ph 5.5
Length = 234
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 318 IDDAYMEDITDDSSPSLNLSRINSTSRFEQLW 349
I D +ME +TDD S + L R+ +R E W
Sbjct: 118 IRDGHMEQLTDDHSVAGELVRMGEITRHEARW 149
>pdb|3JUD|A Chain A, Human Gamma-Glutamylamine Cyclotransferase, E82q Mutant
Length = 153
Score = 29.6 bits (65), Expect = 4.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 267 EGEVKKLDQRLLRFLESVDKHVASYDR 293
EGEV +D+R+LRFL+ A Y R
Sbjct: 64 EGEVYAVDERMLRFLDDFQSCPALYQR 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,617,256
Number of Sequences: 62578
Number of extensions: 492266
Number of successful extensions: 1229
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 16
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)