Query 011431
Match_columns 486
No_of_seqs 435 out of 3000
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 2.4E-52 8.3E-57 383.7 10.3 176 8-186 24-202 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 9.1E-51 3.1E-55 367.7 9.2 168 16-188 5-174 (176)
3 3h16_A TIR protein; bacteria T 100.0 4.5E-31 1.5E-35 236.7 4.2 117 14-133 15-133 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 3.6E-25 1.2E-29 195.8 -2.9 103 14-120 5-111 (146)
5 2a5y_B CED-4; apoptosis; HET: 99.9 1.1E-22 3.9E-27 218.3 9.5 158 213-381 136-309 (549)
6 1fyx_A TOLL-like receptor 2; b 99.8 4E-22 1.4E-26 177.2 0.8 99 16-118 2-107 (149)
7 2j67_A TOLL like receptor 10; 99.8 1.4E-21 4.8E-26 178.4 3.4 99 14-116 30-134 (178)
8 1t3g_A X-linked interleukin-1 99.8 4.4E-21 1.5E-25 172.1 6.3 99 19-119 2-115 (159)
9 2js7_A Myeloid differentiation 99.8 1.6E-21 5.6E-26 175.1 3.2 101 14-118 11-117 (160)
10 1vt4_I APAF-1 related killer D 99.7 8.1E-19 2.8E-23 194.8 4.5 156 212-379 135-312 (1221)
11 3sfz_A APAF-1, apoptotic pepti 99.7 2.2E-17 7.5E-22 192.2 10.1 159 212-380 131-301 (1249)
12 1z6t_A APAF-1, apoptotic prote 99.5 1.2E-14 4.2E-19 156.8 9.0 157 212-380 131-301 (591)
13 3j0a_A TOLL-like receptor 5; m 99.5 1.5E-14 5.1E-19 162.7 6.7 100 15-118 666-774 (844)
14 3iwl_A Copper transport protei 98.6 8.1E-08 2.8E-12 72.5 7.6 65 383-451 2-67 (68)
15 1cc8_A Protein (metallochapero 98.5 6.9E-07 2.4E-11 68.1 8.9 66 382-450 4-71 (73)
16 2crl_A Copper chaperone for su 98.4 1.8E-06 6.2E-11 70.2 9.3 73 382-457 18-91 (98)
17 1w5s_A Origin recognition comp 98.1 9E-07 3.1E-11 90.3 3.5 149 226-377 51-227 (412)
18 4a4j_A Pacszia, cation-transpo 98.1 8.1E-06 2.8E-10 61.1 7.4 63 383-448 2-68 (69)
19 1njg_A DNA polymerase III subu 98.1 1.1E-05 3.8E-10 75.0 9.1 72 308-379 126-199 (250)
20 2qby_B CDC6 homolog 3, cell di 98.0 6.7E-06 2.3E-10 83.0 8.0 147 226-378 44-210 (384)
21 3dxs_X Copper-transporting ATP 98.0 2.3E-05 7.9E-10 59.4 7.6 66 383-450 2-71 (74)
22 3fry_A Probable copper-exporti 97.9 1.6E-05 5.6E-10 60.4 6.4 65 381-450 3-69 (73)
23 1qup_A Superoxide dismutase 1 97.7 9.8E-05 3.3E-09 69.2 9.1 69 383-454 6-75 (222)
24 2roe_A Heavy metal binding pro 97.7 5.6E-05 1.9E-09 55.6 5.2 55 387-444 4-59 (66)
25 2xmm_A SSR2857 protein, ATX1; 97.6 6.9E-05 2.4E-09 54.3 5.3 57 385-444 3-60 (64)
26 2chg_A Replication factor C sm 97.6 0.0002 7E-09 65.4 9.3 145 215-379 27-175 (226)
27 1jk9_B CCS, copper chaperone f 97.6 0.00023 8E-09 67.7 9.4 69 383-454 7-76 (249)
28 2qby_A CDC6 homolog 1, cell di 97.6 4.3E-05 1.5E-09 76.7 4.5 152 225-378 43-210 (386)
29 2k2p_A Uncharacterized protein 97.5 0.00012 4E-09 57.6 5.4 60 382-444 21-81 (85)
30 2qen_A Walker-type ATPase; unk 97.5 7.1E-05 2.4E-09 74.1 4.7 142 228-377 32-215 (350)
31 2l3m_A Copper-ION-binding prot 97.4 0.00043 1.5E-08 51.2 7.0 61 382-444 4-67 (71)
32 2xmw_A PACS-N, cation-transpor 97.4 0.00064 2.2E-08 50.1 7.9 60 383-444 3-64 (71)
33 1osd_A MERP, hypothetical prot 97.4 0.00076 2.6E-08 49.9 8.1 63 383-447 3-69 (72)
34 1q8l_A Copper-transporting ATP 97.3 0.0007 2.4E-08 52.4 8.1 65 379-445 5-72 (84)
35 1fvq_A Copper-transporting ATP 97.3 0.0007 2.4E-08 50.1 7.2 63 385-449 4-69 (72)
36 2v1u_A Cell division control p 97.2 0.00055 1.9E-08 68.6 7.1 151 226-378 43-214 (387)
37 1yg0_A COP associated protein; 97.2 0.0013 4.3E-08 47.6 7.3 57 386-444 4-62 (66)
38 3cjk_B Copper-transporting ATP 97.1 0.002 6.8E-08 48.2 8.6 63 386-450 5-71 (75)
39 1aw0_A Menkes copper-transport 97.1 0.00085 2.9E-08 49.6 6.4 60 383-444 3-65 (72)
40 1y3j_A Copper-transporting ATP 97.1 0.0013 4.3E-08 49.7 7.3 66 382-449 2-71 (77)
41 1mwy_A ZNTA; open-faced beta-s 97.1 0.0017 5.9E-08 48.3 7.5 61 383-445 3-64 (73)
42 1cpz_A Protein (COPZ); copper 97.1 0.0018 6E-08 47.1 7.3 57 390-448 8-67 (68)
43 2fna_A Conserved hypothetical 97.1 0.0003 1E-08 69.6 3.9 69 309-377 138-221 (357)
44 2g9o_A Copper-transporting ATP 97.1 0.0013 4.4E-08 51.9 6.9 58 384-443 4-64 (90)
45 2qif_A Copper chaperone COPZ; 97.0 0.002 6.9E-08 46.5 7.1 59 384-444 3-64 (69)
46 1sxj_B Activator 1 37 kDa subu 97.0 0.00087 3E-08 65.4 6.4 145 215-379 31-180 (323)
47 1kvi_A Copper-transporting ATP 96.9 0.002 6.7E-08 48.8 6.6 64 383-448 8-75 (79)
48 1yjr_A Copper-transporting ATP 96.8 0.0024 8.2E-08 47.5 6.5 59 384-444 5-66 (75)
49 1opz_A Potential copper-transp 96.8 0.0026 8.9E-08 47.3 6.5 62 382-445 5-69 (76)
50 2kt2_A Mercuric reductase; nme 96.8 0.0027 9.2E-08 46.5 6.4 54 390-445 8-62 (69)
51 2ofg_X Zinc-transporting ATPas 96.8 0.0046 1.6E-07 50.8 8.3 61 382-444 7-70 (111)
52 2ldi_A Zinc-transporting ATPas 96.7 0.0047 1.6E-07 45.0 7.4 59 384-444 4-65 (71)
53 2kkh_A Putative heavy metal tr 96.7 0.0069 2.3E-07 47.9 8.8 66 381-448 14-83 (95)
54 2z4s_A Chromosomal replication 96.7 0.0009 3.1E-08 69.2 3.8 136 227-379 130-277 (440)
55 2kyz_A Heavy metal binding pro 96.6 0.0023 7.8E-08 46.9 4.9 55 385-444 3-58 (67)
56 1p6t_A Potential copper-transp 96.6 0.0038 1.3E-07 53.7 7.1 65 383-449 74-142 (151)
57 1eiw_A Hypothetical protein MT 96.6 0.0012 4.2E-08 54.5 3.5 71 19-113 4-74 (111)
58 2aj0_A Probable cadmium-transp 96.6 0.004 1.4E-07 46.0 6.2 55 383-444 3-58 (71)
59 1iqp_A RFCS; clamp loader, ext 96.5 0.0024 8.1E-08 62.4 5.7 131 229-379 48-183 (327)
60 1fnn_A CDC6P, cell division co 96.5 0.0024 8.2E-08 64.0 5.6 149 228-379 45-207 (389)
61 1jww_A Potential copper-transp 96.4 0.0068 2.3E-07 45.6 6.5 63 384-448 4-70 (80)
62 2ew9_A Copper-transporting ATP 96.1 0.0083 2.9E-07 51.3 6.1 60 384-445 81-143 (149)
63 2rop_A Copper-transporting ATP 96.0 0.019 6.6E-07 52.2 8.3 66 383-450 122-191 (202)
64 3hyn_A Putative signal transdu 95.9 0.021 7.4E-07 50.7 7.9 107 19-129 3-133 (189)
65 2ew9_A Copper-transporting ATP 95.1 0.042 1.4E-06 46.7 7.0 65 382-448 3-71 (149)
66 3h4m_A Proteasome-activating n 95.1 0.024 8.3E-07 54.2 5.7 47 334-380 154-203 (285)
67 1jr3_A DNA polymerase III subu 94.7 0.042 1.4E-06 54.5 6.6 71 308-378 119-191 (373)
68 2rop_A Copper-transporting ATP 94.5 0.074 2.5E-06 48.2 7.3 60 382-443 19-81 (202)
69 1l8q_A Chromosomal replication 94.5 0.019 6.5E-07 56.3 3.3 132 227-379 37-180 (324)
70 2chq_A Replication factor C sm 94.3 0.053 1.8E-06 52.4 6.0 72 308-379 102-175 (319)
71 1d2n_A N-ethylmaleimide-sensit 94.0 0.031 1.1E-06 53.3 3.6 26 227-253 64-89 (272)
72 1p6t_A Potential copper-transp 93.9 0.11 3.9E-06 44.2 6.7 62 381-444 4-68 (151)
73 3syl_A Protein CBBX; photosynt 93.7 0.023 7.9E-07 55.0 2.2 130 226-379 66-218 (309)
74 2qz4_A Paraplegin; AAA+, SPG7, 93.3 0.11 3.8E-06 48.6 6.2 45 335-379 144-191 (262)
75 3cf0_A Transitional endoplasmi 92.3 0.3 1E-05 47.2 7.8 25 228-253 50-74 (301)
76 3u61_B DNA polymerase accessor 91.7 0.23 7.8E-06 48.3 6.1 118 228-370 49-170 (324)
77 3pvs_A Replication-associated 91.4 0.14 4.6E-06 52.8 4.3 126 227-379 50-179 (447)
78 3j09_A COPA, copper-exporting 91.3 0.28 9.5E-06 53.7 6.9 59 385-445 4-65 (723)
79 1a5t_A Delta prime, HOLB; zinc 90.7 1.4 4.6E-05 43.2 10.7 70 308-378 108-180 (334)
80 3eie_A Vacuolar protein sortin 90.5 0.53 1.8E-05 45.8 7.5 47 334-380 152-199 (322)
81 3lw7_A Adenylate kinase relate 89.9 0.15 5.1E-06 44.1 2.7 22 228-251 2-23 (179)
82 1zu4_A FTSY; GTPase, signal re 89.7 0.62 2.1E-05 45.6 7.2 27 226-253 104-130 (320)
83 1sxj_A Activator 1 95 kDa subu 89.6 0.76 2.6E-05 48.1 8.3 25 227-252 77-101 (516)
84 3te6_A Regulatory protein SIR3 89.2 0.85 2.9E-05 44.6 7.7 145 227-379 45-212 (318)
85 3ec2_A DNA replication protein 89.1 0.18 6E-06 44.6 2.5 26 227-253 38-63 (180)
86 1odf_A YGR205W, hypothetical 3 88.7 0.38 1.3E-05 46.5 4.8 29 224-253 28-56 (290)
87 1jbk_A CLPB protein; beta barr 88.4 0.44 1.5E-05 41.4 4.7 37 215-253 32-68 (195)
88 3kb2_A SPBC2 prophage-derived 88.2 0.26 8.7E-06 42.7 2.9 25 228-253 2-26 (173)
89 2w58_A DNAI, primosome compone 88.1 0.43 1.5E-05 42.8 4.4 27 228-255 55-81 (202)
90 3c8u_A Fructokinase; YP_612366 87.7 0.46 1.6E-05 43.0 4.5 28 225-253 20-47 (208)
91 2zan_A Vacuolar protein sortin 87.5 0.87 3E-05 46.6 6.9 24 228-252 168-191 (444)
92 1qhx_A CPT, protein (chloramph 87.2 0.31 1.1E-05 42.6 2.9 25 228-253 4-28 (178)
93 3vfd_A Spastin; ATPase, microt 86.9 1.1 3.7E-05 44.8 7.1 27 228-255 149-175 (389)
94 3vaa_A Shikimate kinase, SK; s 86.8 0.33 1.1E-05 43.6 2.9 25 227-252 25-49 (199)
95 1zp6_A Hypothetical protein AT 86.6 0.31 1.1E-05 43.1 2.6 23 228-251 10-32 (191)
96 1rz3_A Hypothetical protein rb 86.6 0.69 2.4E-05 41.6 4.9 27 225-252 20-46 (201)
97 2jaq_A Deoxyguanosine kinase; 86.0 0.38 1.3E-05 42.9 2.8 24 229-253 2-25 (205)
98 1kag_A SKI, shikimate kinase I 85.9 0.37 1.3E-05 41.9 2.6 24 228-252 5-28 (173)
99 1xjc_A MOBB protein homolog; s 85.6 0.35 1.2E-05 42.7 2.3 27 226-253 3-29 (169)
100 2p65_A Hypothetical protein PF 85.5 0.69 2.4E-05 40.1 4.3 25 228-253 44-68 (187)
101 3iij_A Coilin-interacting nucl 85.4 0.4 1.4E-05 42.2 2.6 25 227-252 11-35 (180)
102 3bpd_A Uncharacterized protein 85.4 1.1 3.7E-05 35.3 4.6 59 383-444 7-73 (100)
103 3trf_A Shikimate kinase, SK; a 85.3 0.44 1.5E-05 42.0 2.9 24 228-252 6-29 (185)
104 2kjq_A DNAA-related protein; s 85.0 0.39 1.3E-05 41.4 2.2 26 227-253 36-61 (149)
105 3t61_A Gluconokinase; PSI-biol 85.0 0.39 1.3E-05 43.1 2.4 25 227-252 18-42 (202)
106 1kgd_A CASK, peripheral plasma 84.8 0.44 1.5E-05 42.1 2.6 24 228-252 6-29 (180)
107 1nks_A Adenylate kinase; therm 84.6 0.5 1.7E-05 41.6 2.9 25 228-253 2-26 (194)
108 2og2_A Putative signal recogni 84.5 1.4 4.7E-05 43.9 6.3 26 227-253 157-182 (359)
109 2ga8_A Hypothetical 39.9 kDa p 84.5 0.69 2.4E-05 45.9 4.1 31 225-256 22-52 (359)
110 3b9q_A Chloroplast SRP recepto 84.4 1.3 4.4E-05 42.9 5.9 26 227-253 100-125 (302)
111 3ea0_A ATPase, para family; al 84.3 0.49 1.7E-05 43.6 2.8 28 226-253 3-30 (245)
112 2hf9_A Probable hydrogenase ni 84.3 0.77 2.6E-05 41.7 4.1 26 226-252 37-62 (226)
113 1ly1_A Polynucleotide kinase; 84.2 0.47 1.6E-05 41.3 2.5 22 228-250 3-24 (181)
114 3bos_A Putative DNA replicatio 84.1 0.92 3.1E-05 41.2 4.6 122 227-379 52-188 (242)
115 1zuh_A Shikimate kinase; alpha 84.1 0.54 1.8E-05 40.7 2.8 26 226-252 6-31 (168)
116 1knq_A Gluconate kinase; ALFA/ 84.1 0.53 1.8E-05 41.0 2.8 25 227-252 8-32 (175)
117 2if2_A Dephospho-COA kinase; a 83.8 0.48 1.6E-05 42.5 2.4 22 228-250 2-23 (204)
118 2yvu_A Probable adenylyl-sulfa 83.8 0.55 1.9E-05 41.5 2.8 26 227-253 13-38 (186)
119 4dzz_A Plasmid partitioning pr 83.7 0.49 1.7E-05 42.3 2.4 25 228-252 2-26 (206)
120 1kht_A Adenylate kinase; phosp 83.4 0.56 1.9E-05 41.3 2.7 25 228-253 4-28 (192)
121 3cwq_A Para family chromosome 83.3 0.54 1.8E-05 42.8 2.6 26 228-253 1-26 (209)
122 2bdt_A BH3686; alpha-beta prot 83.3 0.53 1.8E-05 41.7 2.5 22 228-250 3-24 (189)
123 2qor_A Guanylate kinase; phosp 83.2 0.52 1.8E-05 42.5 2.4 25 227-252 12-36 (204)
124 2qt1_A Nicotinamide riboside k 83.2 0.6 2E-05 42.0 2.8 26 225-251 19-44 (207)
125 3a00_A Guanylate kinase, GMP k 83.2 0.57 1.9E-05 41.6 2.6 25 228-253 2-26 (186)
126 4eun_A Thermoresistant glucoki 83.1 0.57 2E-05 42.1 2.7 25 227-252 29-53 (200)
127 3fwy_A Light-independent proto 83.0 0.55 1.9E-05 45.9 2.6 25 225-250 46-70 (314)
128 2x3d_A SSO6206; unknown functi 83.0 1.5 5.2E-05 34.3 4.5 58 384-444 6-72 (96)
129 1gtv_A TMK, thymidylate kinase 82.9 0.51 1.8E-05 42.5 2.3 23 229-252 2-24 (214)
130 2wsm_A Hydrogenase expression/ 82.8 0.93 3.2E-05 40.9 4.0 26 226-252 29-54 (221)
131 2j41_A Guanylate kinase; GMP, 82.8 0.59 2E-05 41.8 2.6 24 228-252 7-30 (207)
132 1uf9_A TT1252 protein; P-loop, 82.8 0.64 2.2E-05 41.4 2.8 26 225-251 6-31 (203)
133 2iyv_A Shikimate kinase, SK; t 82.6 0.61 2.1E-05 41.0 2.6 24 228-252 3-26 (184)
134 2yhs_A FTSY, cell division pro 82.6 1.8 6.1E-05 44.9 6.4 26 227-253 293-318 (503)
135 3uie_A Adenylyl-sulfate kinase 82.4 0.66 2.3E-05 41.6 2.8 27 226-253 24-50 (200)
136 1ukz_A Uridylate kinase; trans 82.4 0.78 2.7E-05 41.0 3.2 27 225-252 13-39 (203)
137 1via_A Shikimate kinase; struc 82.3 0.64 2.2E-05 40.6 2.6 23 229-252 6-28 (175)
138 3tr0_A Guanylate kinase, GMP k 82.1 0.6 2E-05 41.7 2.4 24 228-252 8-31 (205)
139 1ye8_A Protein THEP1, hypothet 82.1 0.67 2.3E-05 41.1 2.6 24 229-253 2-25 (178)
140 2rhm_A Putative kinase; P-loop 82.0 0.78 2.7E-05 40.4 3.1 24 228-252 6-29 (193)
141 3asz_A Uridine kinase; cytidin 81.8 0.69 2.4E-05 41.6 2.7 26 226-252 5-30 (211)
142 3k9g_A PF-32 protein; ssgcid, 81.8 0.65 2.2E-05 43.6 2.6 29 225-253 25-53 (267)
143 3q9l_A Septum site-determining 81.6 0.68 2.3E-05 43.1 2.6 26 228-253 3-28 (260)
144 2pt5_A Shikimate kinase, SK; a 81.6 0.78 2.7E-05 39.5 2.8 23 229-252 2-24 (168)
145 2raq_A Conserved protein MTH88 81.4 1.6 5.6E-05 34.2 4.2 59 383-444 7-73 (97)
146 3t15_A Ribulose bisphosphate c 81.4 0.82 2.8E-05 43.9 3.2 30 226-256 35-64 (293)
147 1e6c_A Shikimate kinase; phosp 81.4 0.71 2.4E-05 40.0 2.5 24 228-252 3-26 (173)
148 2c95_A Adenylate kinase 1; tra 81.4 0.79 2.7E-05 40.5 2.9 25 227-252 9-33 (196)
149 2pbr_A DTMP kinase, thymidylat 81.2 0.75 2.6E-05 40.5 2.6 23 229-252 2-24 (195)
150 2bwj_A Adenylate kinase 5; pho 81.2 0.81 2.8E-05 40.6 2.9 24 228-252 13-36 (199)
151 1tev_A UMP-CMP kinase; ploop, 81.2 0.83 2.8E-05 40.2 2.9 24 228-252 4-27 (196)
152 2vli_A Antibiotic resistance p 81.1 0.68 2.3E-05 40.5 2.3 24 228-252 6-29 (183)
153 2px0_A Flagellar biosynthesis 81.0 0.67 2.3E-05 44.8 2.4 26 226-252 104-129 (296)
154 1cke_A CK, MSSA, protein (cyti 81.0 0.75 2.6E-05 41.8 2.6 24 228-252 6-29 (227)
155 3p32_A Probable GTPase RV1496/ 81.0 1.2 4E-05 44.2 4.2 29 223-252 75-103 (355)
156 2p5t_B PEZT; postsegregational 80.9 1 3.5E-05 42.1 3.6 26 226-252 31-56 (253)
157 1jjv_A Dephospho-COA kinase; P 80.9 0.73 2.5E-05 41.4 2.5 22 228-250 3-24 (206)
158 1g3q_A MIND ATPase, cell divis 80.6 0.77 2.6E-05 42.1 2.6 26 228-253 3-28 (237)
159 2ged_A SR-beta, signal recogni 80.6 1.3 4.6E-05 38.8 4.1 25 226-251 47-71 (193)
160 1tue_A Replication protein E1; 80.4 1.6 5.6E-05 39.8 4.6 40 212-252 43-82 (212)
161 2gno_A DNA polymerase III, gam 80.4 5.9 0.0002 38.2 9.0 135 218-378 10-152 (305)
162 3tau_A Guanylate kinase, GMP k 80.3 0.82 2.8E-05 41.4 2.6 26 227-253 8-33 (208)
163 2xxa_A Signal recognition part 80.3 1.4 4.7E-05 45.0 4.6 27 226-253 99-125 (433)
164 4gp7_A Metallophosphoesterase; 80.3 0.73 2.5E-05 40.3 2.2 21 228-249 10-30 (171)
165 1lvg_A Guanylate kinase, GMP k 80.2 0.77 2.6E-05 41.3 2.4 24 228-252 5-28 (198)
166 3cm0_A Adenylate kinase; ATP-b 80.2 0.94 3.2E-05 39.7 2.9 24 228-252 5-28 (186)
167 1qf9_A UMP/CMP kinase, protein 80.2 0.97 3.3E-05 39.7 3.0 25 227-252 6-30 (194)
168 1uj2_A Uridine-cytidine kinase 80.0 0.92 3.2E-05 42.4 3.0 28 225-253 20-47 (252)
169 2afh_E Nitrogenase iron protei 79.8 0.86 3E-05 43.4 2.7 25 227-252 2-26 (289)
170 2v3c_C SRP54, signal recogniti 79.8 1.1 3.7E-05 45.8 3.6 25 227-252 99-123 (432)
171 2ze6_A Isopentenyl transferase 79.7 0.98 3.3E-05 42.4 3.0 24 228-252 2-25 (253)
172 2plr_A DTMP kinase, probable t 79.7 0.93 3.2E-05 40.5 2.8 25 228-253 5-29 (213)
173 1y63_A LMAJ004144AAA protein; 79.5 0.83 2.9E-05 40.4 2.3 24 227-251 10-33 (184)
174 2bbw_A Adenylate kinase 4, AK4 79.4 0.9 3.1E-05 42.2 2.6 25 227-252 27-51 (246)
175 1hqc_A RUVB; extended AAA-ATPa 79.4 1.5 5E-05 42.2 4.3 25 228-253 39-63 (324)
176 3aez_A Pantothenate kinase; tr 79.0 0.87 3E-05 44.3 2.5 28 225-253 88-115 (312)
177 1in4_A RUVB, holliday junction 78.8 0.99 3.4E-05 44.2 2.9 28 226-254 50-77 (334)
178 1np6_A Molybdopterin-guanine d 78.8 1 3.5E-05 39.9 2.7 26 227-253 6-31 (174)
179 2f6r_A COA synthase, bifunctio 78.8 1 3.6E-05 42.9 2.9 24 225-249 73-96 (281)
180 1aky_A Adenylate kinase; ATP:A 78.5 1.1 3.8E-05 40.7 2.9 24 228-252 5-28 (220)
181 1wcv_1 SOJ, segregation protei 78.4 0.83 2.8E-05 42.8 2.1 28 226-253 5-32 (257)
182 1rj9_A FTSY, signal recognitio 78.4 0.99 3.4E-05 43.8 2.7 27 226-253 101-127 (304)
183 1yrb_A ATP(GTP)binding protein 78.3 0.96 3.3E-05 42.1 2.5 27 226-253 13-39 (262)
184 2cdn_A Adenylate kinase; phosp 78.3 1.1 3.9E-05 39.9 2.9 26 226-252 19-44 (201)
185 2dyk_A GTP-binding protein; GT 78.2 1.1 3.8E-05 37.7 2.7 23 228-251 2-24 (161)
186 2ce2_X GTPase HRAS; signaling 78.2 1 3.5E-05 37.9 2.5 21 230-251 6-26 (166)
187 1nn5_A Similar to deoxythymidy 78.2 1.1 3.7E-05 40.2 2.7 25 228-253 10-34 (215)
188 3end_A Light-independent proto 78.1 1 3.4E-05 43.4 2.6 27 225-252 39-65 (307)
189 4e22_A Cytidylate kinase; P-lo 78.1 1.1 3.8E-05 42.0 2.8 25 227-252 27-51 (252)
190 2wwf_A Thymidilate kinase, put 78.1 1.1 3.8E-05 40.2 2.7 26 227-253 10-35 (212)
191 1oix_A RAS-related protein RAB 77.8 1.1 3.8E-05 39.6 2.7 24 227-251 29-52 (191)
192 3nwj_A ATSK2; P loop, shikimat 77.8 1.1 3.6E-05 42.3 2.6 25 228-253 49-73 (250)
193 2i3b_A HCR-ntpase, human cance 77.8 1 3.6E-05 40.3 2.4 23 229-252 3-25 (189)
194 2z0h_A DTMP kinase, thymidylat 77.6 1.1 3.9E-05 39.5 2.6 23 229-252 2-24 (197)
195 1cp2_A CP2, nitrogenase iron p 77.5 1.1 3.7E-05 42.1 2.6 25 228-253 2-26 (269)
196 1ex7_A Guanylate kinase; subst 77.5 1.1 3.9E-05 40.1 2.6 28 229-257 3-30 (186)
197 1znw_A Guanylate kinase, GMP k 77.4 1 3.5E-05 40.6 2.3 24 228-252 21-44 (207)
198 3e70_C DPA, signal recognition 77.4 1.9 6.4E-05 42.3 4.3 26 226-252 128-153 (328)
199 1m7g_A Adenylylsulfate kinase; 77.4 1.2 4.1E-05 40.2 2.8 25 227-252 25-49 (211)
200 3pfi_A Holliday junction ATP-d 77.3 2.2 7.5E-05 41.4 4.9 28 227-255 55-82 (338)
201 3con_A GTPase NRAS; structural 77.3 1.1 3.7E-05 39.3 2.4 22 229-251 23-44 (190)
202 3a4m_A L-seryl-tRNA(SEC) kinas 77.2 1.1 3.7E-05 42.2 2.5 25 227-252 4-28 (260)
203 1ixz_A ATP-dependent metallopr 77.1 1.2 4.1E-05 41.4 2.7 23 230-253 52-74 (254)
204 1z6g_A Guanylate kinase; struc 77.0 1 3.4E-05 41.2 2.1 24 228-252 24-47 (218)
205 2pez_A Bifunctional 3'-phospho 76.9 1.3 4.4E-05 38.7 2.8 24 228-252 6-29 (179)
206 2wji_A Ferrous iron transport 76.9 1.2 4.1E-05 38.2 2.5 22 228-250 4-25 (165)
207 3tqc_A Pantothenate kinase; bi 76.9 2.2 7.7E-05 41.6 4.7 28 225-253 90-117 (321)
208 3ney_A 55 kDa erythrocyte memb 76.7 1.3 4.5E-05 40.0 2.8 27 226-253 18-44 (197)
209 3t1o_A Gliding protein MGLA; G 76.6 1.3 4.5E-05 38.7 2.7 27 228-255 15-41 (198)
210 1hyq_A MIND, cell division inh 76.5 1.3 4.3E-05 41.4 2.7 26 228-253 3-28 (263)
211 3fkq_A NTRC-like two-domain pr 76.5 1.3 4.6E-05 44.0 3.1 51 30-91 28-83 (373)
212 2xj4_A MIPZ; replication, cell 76.4 1.2 3.9E-05 42.6 2.5 26 228-253 5-30 (286)
213 2grj_A Dephospho-COA kinase; T 76.4 1.2 4.1E-05 40.0 2.5 26 225-251 10-35 (192)
214 2wjg_A FEOB, ferrous iron tran 76.4 1.2 4E-05 38.9 2.3 23 228-251 8-30 (188)
215 2jeo_A Uridine-cytidine kinase 76.3 1.1 3.9E-05 41.5 2.3 25 227-252 25-49 (245)
216 1lv7_A FTSH; alpha/beta domain 76.2 1.3 4.4E-05 41.3 2.7 23 230-253 48-70 (257)
217 1zd8_A GTP:AMP phosphotransfer 76.2 1.4 4.7E-05 40.3 2.9 24 228-252 8-31 (227)
218 1z2a_A RAS-related protein RAB 76.0 1.2 4.2E-05 37.7 2.4 22 229-251 7-28 (168)
219 2ph1_A Nucleotide-binding prot 76.0 1.2 4.2E-05 41.7 2.5 27 226-252 17-43 (262)
220 2f1r_A Molybdopterin-guanine d 76.0 1.1 3.7E-05 39.6 2.0 24 228-252 3-26 (171)
221 2v54_A DTMP kinase, thymidylat 76.0 1.3 4.5E-05 39.3 2.6 24 228-252 5-28 (204)
222 2f9l_A RAB11B, member RAS onco 75.9 1.2 4.1E-05 39.5 2.3 23 228-251 6-28 (199)
223 3kl4_A SRP54, signal recogniti 75.8 2.2 7.4E-05 43.6 4.4 26 226-252 96-121 (433)
224 2j37_W Signal recognition part 75.7 2.1 7.3E-05 44.5 4.4 26 226-252 100-125 (504)
225 3ake_A Cytidylate kinase; CMP 75.6 1.5 5.1E-05 39.1 2.9 23 229-252 4-26 (208)
226 1vht_A Dephospho-COA kinase; s 75.5 1.3 4.5E-05 40.1 2.5 22 228-250 5-26 (218)
227 1sq5_A Pantothenate kinase; P- 75.2 1.3 4.6E-05 42.8 2.6 28 225-253 78-105 (308)
228 1u8z_A RAS-related protein RAL 75.2 1.4 4.6E-05 37.3 2.4 23 228-251 5-27 (168)
229 1gvn_B Zeta; postsegregational 75.1 1.7 6E-05 41.5 3.4 25 227-252 33-57 (287)
230 3n70_A Transport activator; si 75.1 2.4 8.3E-05 35.7 4.0 22 230-252 27-48 (145)
231 3zq6_A Putative arsenical pump 74.9 1.1 3.9E-05 43.6 2.0 28 224-251 10-37 (324)
232 1byi_A Dethiobiotin synthase; 74.8 1.5 5.1E-05 39.7 2.7 25 228-252 2-26 (224)
233 1puj_A YLQF, conserved hypothe 74.7 23 0.0008 33.4 11.3 49 65-118 14-62 (282)
234 1c1y_A RAS-related protein RAP 74.7 1.4 4.8E-05 37.3 2.4 22 229-251 5-26 (167)
235 1s96_A Guanylate kinase, GMP k 74.7 1.5 5E-05 40.3 2.6 25 228-253 17-41 (219)
236 1vma_A Cell division protein F 74.6 1.5 5.2E-05 42.5 2.8 27 226-253 103-129 (306)
237 3dm5_A SRP54, signal recogniti 74.6 2.8 9.5E-05 42.8 4.9 27 226-253 99-125 (443)
238 1ls1_A Signal recognition part 74.5 1.4 4.8E-05 42.5 2.5 27 226-253 97-123 (295)
239 1svi_A GTP-binding protein YSX 74.5 1.7 5.8E-05 38.0 2.9 25 226-251 22-46 (195)
240 3b9p_A CG5977-PA, isoform A; A 74.4 1.5 5.2E-05 41.7 2.8 25 228-253 55-79 (297)
241 1htw_A HI0065; nucleotide-bind 74.3 1.7 5.9E-05 37.7 2.8 24 228-252 34-57 (158)
242 3fb4_A Adenylate kinase; psych 74.1 1.6 5.4E-05 39.4 2.6 23 229-252 2-24 (216)
243 3lnc_A Guanylate kinase, GMP k 74.1 1.1 3.9E-05 41.0 1.7 23 228-251 28-51 (231)
244 2zej_A Dardarin, leucine-rich 74.0 1.3 4.6E-05 38.7 2.1 21 229-250 4-24 (184)
245 3dl0_A Adenylate kinase; phosp 73.9 1.6 5.4E-05 39.4 2.6 23 229-252 2-24 (216)
246 1iy2_A ATP-dependent metallopr 73.7 1.6 5.5E-05 41.2 2.7 23 230-253 76-98 (278)
247 2fn4_A P23, RAS-related protei 73.7 1.6 5.4E-05 37.5 2.5 25 226-251 8-32 (181)
248 2ehv_A Hypothetical protein PH 73.6 1.5 5E-05 40.3 2.4 21 228-249 31-51 (251)
249 2erx_A GTP-binding protein DI- 73.6 1.5 5.3E-05 37.1 2.3 21 229-250 5-25 (172)
250 3llu_A RAS-related GTP-binding 73.4 1.6 5.4E-05 38.6 2.4 24 227-251 20-43 (196)
251 1z08_A RAS-related protein RAB 73.4 1.6 5.4E-05 37.1 2.4 23 228-251 7-29 (170)
252 4a74_A DNA repair and recombin 73.2 1.7 5.7E-05 39.4 2.6 23 228-251 26-48 (231)
253 1a7j_A Phosphoribulokinase; tr 73.1 1.4 4.8E-05 42.3 2.1 26 226-252 4-29 (290)
254 2nzj_A GTP-binding protein REM 73.0 1.5 5.2E-05 37.5 2.1 23 228-251 5-27 (175)
255 1z0j_A RAB-22, RAS-related pro 72.9 1.7 5.7E-05 36.9 2.4 22 229-251 8-29 (170)
256 1ek0_A Protein (GTP-binding pr 72.9 1.7 5.7E-05 36.9 2.4 21 230-251 6-26 (170)
257 3q85_A GTP-binding protein REM 72.9 1.8 6.1E-05 36.8 2.6 21 229-250 4-24 (169)
258 1m7b_A RND3/RHOE small GTP-bin 72.9 1.7 5.8E-05 37.9 2.5 23 228-251 8-30 (184)
259 2x8a_A Nuclear valosin-contain 72.8 1.7 5.7E-05 41.3 2.6 44 335-378 145-191 (274)
260 3d3q_A TRNA delta(2)-isopenten 72.8 1.8 6.1E-05 42.7 2.8 24 228-252 8-31 (340)
261 1zak_A Adenylate kinase; ATP:A 72.8 1.8 6.1E-05 39.3 2.7 25 228-253 6-30 (222)
262 3pqc_A Probable GTP-binding pr 72.8 2.1 7.1E-05 37.3 3.1 25 226-251 22-46 (195)
263 1fzq_A ADP-ribosylation factor 72.7 2.1 7.1E-05 37.3 3.0 26 225-251 14-39 (181)
264 1z0f_A RAB14, member RAS oncog 72.6 1.7 5.8E-05 37.2 2.4 25 226-251 14-38 (179)
265 2gj8_A MNME, tRNA modification 72.3 1.8 6E-05 37.5 2.4 22 229-251 6-27 (172)
266 3q72_A GTP-binding protein RAD 72.3 1.7 5.7E-05 36.8 2.2 21 229-250 4-24 (166)
267 3ez2_A Plasmid partition prote 72.0 2.9 9.8E-05 41.9 4.2 29 224-252 105-133 (398)
268 2r62_A Cell division protease 72.0 1.4 4.9E-05 41.1 1.9 25 230-255 47-71 (268)
269 2pcj_A ABC transporter, lipopr 71.9 1.8 6.1E-05 39.8 2.4 23 228-251 31-53 (224)
270 2lkc_A Translation initiation 71.8 2.2 7.5E-05 36.6 2.9 24 226-250 7-30 (178)
271 1j8m_F SRP54, signal recogniti 71.8 1.7 5.7E-05 42.0 2.3 25 227-252 98-122 (297)
272 1ky3_A GTP-binding protein YPT 71.8 1.8 6.2E-05 37.2 2.4 25 226-251 7-31 (182)
273 2cxx_A Probable GTP-binding pr 71.8 1.8 6.1E-05 37.6 2.4 22 229-251 3-24 (190)
274 1kao_A RAP2A; GTP-binding prot 71.8 1.8 6.3E-05 36.4 2.4 22 229-251 5-26 (167)
275 1sxj_D Activator 1 41 kDa subu 71.7 2.8 9.5E-05 40.7 4.0 70 308-378 133-205 (353)
276 3c5c_A RAS-like protein 12; GD 71.6 1.8 6.2E-05 38.0 2.4 23 228-251 22-44 (187)
277 3kkq_A RAS-related protein M-R 71.6 1.8 6.2E-05 37.4 2.4 24 227-251 18-41 (183)
278 2hxs_A RAB-26, RAS-related pro 71.5 2 6.8E-05 36.8 2.6 23 228-251 7-29 (178)
279 1r8s_A ADP-ribosylation factor 71.4 1.9 6.6E-05 36.4 2.4 21 230-251 3-23 (164)
280 2iwr_A Centaurin gamma 1; ANK 71.4 1.8 6.3E-05 37.2 2.3 22 229-251 9-30 (178)
281 1g16_A RAS-related protein SEC 71.4 1.9 6.6E-05 36.5 2.4 22 229-251 5-26 (170)
282 1r2q_A RAS-related protein RAB 71.2 1.9 6.6E-05 36.4 2.4 22 229-251 8-29 (170)
283 1f6b_A SAR1; gtpases, N-termin 71.2 3.3 0.00011 36.7 4.0 22 228-250 26-47 (198)
284 1nrj_B SR-beta, signal recogni 71.1 2.2 7.4E-05 38.3 2.8 26 226-252 11-36 (218)
285 2bme_A RAB4A, RAS-related prot 71.1 2 6.7E-05 37.2 2.5 24 227-251 10-33 (186)
286 2onk_A Molybdate/tungstate ABC 71.1 2 6.7E-05 40.1 2.6 23 228-251 25-47 (240)
287 3b85_A Phosphate starvation-in 71.0 1.8 6E-05 39.4 2.2 23 228-251 23-45 (208)
288 3ihw_A Centg3; RAS, centaurin, 71.0 1.9 6.6E-05 37.8 2.4 23 228-251 21-43 (184)
289 3pg5_A Uncharacterized protein 70.9 1.5 5.3E-05 43.4 1.9 25 228-252 2-26 (361)
290 3tlx_A Adenylate kinase 2; str 70.9 3.7 0.00013 38.0 4.5 26 226-252 28-53 (243)
291 2cvh_A DNA repair and recombin 70.8 1.9 6.4E-05 38.7 2.3 22 228-250 21-42 (220)
292 4dsu_A GTPase KRAS, isoform 2B 70.7 2 6.7E-05 37.2 2.4 22 229-251 6-27 (189)
293 3sop_A Neuronal-specific septi 70.7 2.1 7.1E-05 40.6 2.7 23 229-252 4-26 (270)
294 1wms_A RAB-9, RAB9, RAS-relate 70.5 2 6.9E-05 36.8 2.4 23 228-251 8-30 (177)
295 2a9k_A RAS-related protein RAL 70.4 2 6.9E-05 37.0 2.4 24 227-251 18-41 (187)
296 3t5g_A GTP-binding protein RHE 70.2 2.1 7.2E-05 36.9 2.5 23 227-250 6-28 (181)
297 3kjh_A CO dehydrogenase/acetyl 70.2 1.8 6E-05 39.7 2.0 23 230-253 3-25 (254)
298 2cbz_A Multidrug resistance-as 70.1 2 6.8E-05 39.9 2.3 24 228-252 32-55 (237)
299 1upt_A ARL1, ADP-ribosylation 70.1 2.1 7.2E-05 36.4 2.4 23 228-251 8-30 (171)
300 3tif_A Uncharacterized ABC tra 69.9 2 6.8E-05 39.8 2.3 23 228-251 32-54 (235)
301 2efe_B Small GTP-binding prote 69.9 2.1 7.2E-05 36.8 2.4 23 228-251 13-35 (181)
302 2ocp_A DGK, deoxyguanosine kin 69.8 2.4 8.1E-05 39.1 2.8 24 228-252 3-26 (241)
303 2xb4_A Adenylate kinase; ATP-b 69.8 2.3 7.7E-05 38.8 2.7 23 229-252 2-24 (223)
304 2qnr_A Septin-2, protein NEDD5 69.8 2 6.9E-05 41.4 2.4 21 230-251 21-41 (301)
305 2p67_A LAO/AO transport system 69.7 3.3 0.00011 40.6 4.0 27 225-252 54-80 (341)
306 2bov_A RAla, RAS-related prote 69.7 2.1 7.2E-05 37.8 2.4 24 227-251 14-37 (206)
307 2atv_A RERG, RAS-like estrogen 69.7 2.1 7.2E-05 37.7 2.4 23 228-251 29-51 (196)
308 1vg8_A RAS-related protein RAB 69.7 2.1 7.2E-05 37.8 2.4 25 226-251 7-31 (207)
309 2d2e_A SUFC protein; ABC-ATPas 69.6 2.1 7.3E-05 40.0 2.5 23 228-251 30-52 (250)
310 3bwd_D RAC-like GTP-binding pr 69.6 2.1 7.3E-05 36.8 2.4 22 229-251 10-31 (182)
311 1b0u_A Histidine permease; ABC 69.6 2 6.9E-05 40.5 2.3 23 228-251 33-55 (262)
312 2oil_A CATX-8, RAS-related pro 69.6 2.1 7.2E-05 37.5 2.3 24 227-251 25-48 (193)
313 3tw8_B RAS-related protein RAB 69.5 2.3 7.9E-05 36.4 2.6 24 226-250 8-31 (181)
314 2fg5_A RAB-22B, RAS-related pr 69.4 2.2 7.7E-05 37.4 2.5 24 227-251 23-46 (192)
315 3la6_A Tyrosine-protein kinase 69.3 4.4 0.00015 38.7 4.7 29 224-252 89-117 (286)
316 2vp4_A Deoxynucleoside kinase; 69.3 1.7 5.6E-05 40.0 1.6 25 226-251 19-43 (230)
317 3dz8_A RAS-related protein RAB 69.2 2.3 7.9E-05 37.2 2.5 23 228-251 24-46 (191)
318 1ji0_A ABC transporter; ATP bi 69.2 2.1 7.2E-05 39.8 2.3 23 228-251 33-55 (240)
319 1e4v_A Adenylate kinase; trans 69.1 2.5 8.4E-05 38.2 2.7 23 229-252 2-24 (214)
320 1q3t_A Cytidylate kinase; nucl 69.1 2.7 9.2E-05 38.6 3.0 26 226-252 15-40 (236)
321 3oes_A GTPase rhebl1; small GT 69.1 2.3 7.8E-05 37.7 2.5 24 227-251 24-47 (201)
322 3be4_A Adenylate kinase; malar 69.1 2.6 8.8E-05 38.2 2.9 24 228-252 6-29 (217)
323 1mh1_A RAC1; GTP-binding, GTPa 69.0 2.2 7.7E-05 36.7 2.4 21 229-250 7-27 (186)
324 1m2o_B GTP-binding protein SAR 69.0 2.3 7.9E-05 37.4 2.5 23 228-251 24-46 (190)
325 3bc1_A RAS-related protein RAB 69.0 2.3 7.7E-05 36.9 2.4 24 227-251 11-34 (195)
326 2gf0_A GTP-binding protein DI- 69.0 2.3 8E-05 37.2 2.5 22 228-250 9-30 (199)
327 3cbq_A GTP-binding protein REM 68.7 1.8 6.1E-05 38.5 1.6 23 226-249 22-44 (195)
328 1g6h_A High-affinity branched- 68.6 2.2 7.5E-05 40.1 2.3 24 228-252 34-57 (257)
329 1ak2_A Adenylate kinase isoenz 68.6 2.6 8.8E-05 38.7 2.8 24 228-252 17-40 (233)
330 2w0m_A SSO2452; RECA, SSPF, un 68.6 2.2 7.6E-05 38.4 2.3 24 228-252 24-47 (235)
331 1sxj_E Activator 1 40 kDa subu 68.6 2.6 8.9E-05 41.1 3.0 71 308-379 134-207 (354)
332 2pze_A Cystic fibrosis transme 68.6 2.2 7.7E-05 39.3 2.4 24 228-252 35-58 (229)
333 3uk6_A RUVB-like 2; hexameric 68.5 4.2 0.00014 39.7 4.5 26 228-254 71-96 (368)
334 2g6b_A RAS-related protein RAB 68.4 2.4 8.1E-05 36.4 2.4 24 227-251 10-33 (180)
335 1sgw_A Putative ABC transporte 68.2 2.2 7.4E-05 39.1 2.1 23 228-251 36-58 (214)
336 2olj_A Amino acid ABC transpor 68.2 2.3 7.8E-05 40.3 2.3 23 228-251 51-73 (263)
337 2y8e_A RAB-protein 6, GH09086P 68.2 2.5 8.5E-05 36.1 2.5 21 229-250 16-36 (179)
338 3clv_A RAB5 protein, putative; 68.2 2.4 8.1E-05 37.0 2.4 23 228-251 8-30 (208)
339 3r20_A Cytidylate kinase; stru 68.1 2.7 9.2E-05 39.0 2.8 25 227-252 9-33 (233)
340 1mv5_A LMRA, multidrug resista 68.1 2.4 8.3E-05 39.4 2.5 23 228-251 29-51 (243)
341 3def_A T7I23.11 protein; chlor 68.0 5.1 0.00018 37.4 4.8 25 226-251 35-59 (262)
342 1gwn_A RHO-related GTP-binding 68.0 2.5 8.4E-05 37.9 2.5 24 227-251 28-51 (205)
343 3pxg_A Negative regulator of g 68.0 4.1 0.00014 41.9 4.4 38 214-253 189-226 (468)
344 1vpl_A ABC transporter, ATP-bi 67.9 2.3 7.9E-05 40.0 2.3 23 228-251 42-64 (256)
345 2fh5_B SR-beta, signal recogni 67.9 2.4 8.2E-05 37.9 2.4 24 227-251 7-30 (214)
346 2zu0_C Probable ATP-dependent 67.9 2.4 8.3E-05 40.1 2.5 23 228-251 47-69 (267)
347 3cio_A ETK, tyrosine-protein k 67.9 5 0.00017 38.5 4.8 29 224-252 101-129 (299)
348 1zd9_A ADP-ribosylation factor 67.8 2.5 8.4E-05 37.0 2.4 24 227-251 22-45 (188)
349 3lxx_A GTPase IMAP family memb 67.7 2.7 9.3E-05 38.6 2.8 25 226-251 28-52 (239)
350 2oze_A ORF delta'; para, walke 67.7 2.3 8E-05 40.4 2.4 26 227-252 34-61 (298)
351 3tkl_A RAS-related protein RAB 67.6 2.5 8.5E-05 36.9 2.4 25 226-251 15-39 (196)
352 1zbd_A Rabphilin-3A; G protein 67.6 2.4 8.2E-05 37.4 2.3 23 228-251 9-31 (203)
353 3bfv_A CAPA1, CAPB2, membrane 67.5 4.8 0.00016 38.0 4.5 29 224-252 79-107 (271)
354 3reg_A RHO-like small GTPase; 67.5 2.5 8.5E-05 37.1 2.4 23 228-251 24-46 (194)
355 2o52_A RAS-related protein RAB 67.5 2.4 8.2E-05 37.6 2.3 24 226-250 24-47 (200)
356 2ghi_A Transport protein; mult 67.4 2.4 8.2E-05 39.9 2.3 24 228-252 47-70 (260)
357 3gfo_A Cobalt import ATP-bindi 67.4 2.4 8.2E-05 40.4 2.3 23 228-251 35-57 (275)
358 2h17_A ADP-ribosylation factor 67.4 2.6 9E-05 36.5 2.5 23 228-251 22-44 (181)
359 3gee_A MNME, tRNA modification 67.4 6.2 0.00021 40.7 5.6 23 226-250 233-255 (476)
360 2ew1_A RAS-related protein RAB 67.3 2.6 9E-05 37.6 2.5 25 226-251 25-49 (201)
361 2a5j_A RAS-related protein RAB 67.3 2.5 8.6E-05 37.0 2.3 23 228-251 22-44 (191)
362 2q3h_A RAS homolog gene family 67.2 2.4 8.1E-05 37.4 2.2 23 228-251 21-43 (201)
363 1pui_A ENGB, probable GTP-bind 67.2 1.6 5.6E-05 38.8 1.1 22 228-250 27-48 (210)
364 4g1u_C Hemin import ATP-bindin 67.2 2.5 8.4E-05 40.1 2.3 23 228-251 38-60 (266)
365 2qi9_C Vitamin B12 import ATP- 67.1 2.5 8.5E-05 39.6 2.3 24 228-252 27-50 (249)
366 2ixe_A Antigen peptide transpo 67.1 2.5 8.4E-05 40.2 2.3 24 228-252 46-69 (271)
367 2yz2_A Putative ABC transporte 67.0 2.5 8.4E-05 40.0 2.3 23 228-251 34-56 (266)
368 1nij_A Hypothetical protein YJ 67.0 2.7 9.3E-05 40.8 2.7 25 226-251 3-27 (318)
369 1h65_A Chloroplast outer envel 66.9 5.5 0.00019 37.3 4.8 25 226-251 38-62 (270)
370 2ff7_A Alpha-hemolysin translo 66.9 2.5 8.6E-05 39.5 2.3 23 228-251 36-58 (247)
371 2gf9_A RAS-related protein RAB 66.9 2.6 9E-05 36.7 2.4 24 227-251 22-45 (189)
372 1n0w_A DNA repair protein RAD5 66.7 2.5 8.7E-05 38.5 2.3 23 228-251 25-47 (243)
373 1zj6_A ADP-ribosylation factor 66.6 2.8 9.5E-05 36.5 2.5 23 227-250 16-38 (187)
374 1x3s_A RAS-related protein RAB 66.6 2.7 9.1E-05 36.6 2.4 23 228-251 16-38 (195)
375 1xwi_A SKD1 protein; VPS4B, AA 66.6 2.8 9.7E-05 40.7 2.8 24 228-252 46-69 (322)
376 1nlf_A Regulatory protein REPA 66.6 2.6 8.8E-05 39.9 2.4 24 228-252 31-54 (279)
377 4dhe_A Probable GTP-binding pr 66.5 2.3 7.7E-05 38.3 1.9 25 226-251 28-52 (223)
378 3ice_A Transcription terminati 66.4 8.7 0.0003 38.6 6.2 44 228-272 175-218 (422)
379 3d8b_A Fidgetin-like protein 1 66.4 2.8 9.6E-05 41.3 2.7 26 227-253 117-142 (357)
380 2p5s_A RAS and EF-hand domain 66.4 2.6 9.1E-05 37.2 2.3 25 226-251 27-51 (199)
381 1z06_A RAS-related protein RAB 66.3 2.7 9.4E-05 36.6 2.4 24 227-251 20-43 (189)
382 2nq2_C Hypothetical ABC transp 66.3 2.6 9E-05 39.5 2.4 23 228-251 32-54 (253)
383 2j1l_A RHO-related GTP-binding 66.2 2.6 9E-05 37.8 2.3 22 228-250 35-56 (214)
384 2qp9_X Vacuolar protein sortin 66.1 2.8 9.4E-05 41.4 2.6 25 229-254 86-110 (355)
385 2atx_A Small GTP binding prote 66.1 2.9 9.8E-05 36.6 2.5 23 228-251 19-41 (194)
386 1ltq_A Polynucleotide kinase; 66.0 2.8 9.4E-05 39.9 2.5 23 228-251 3-25 (301)
387 3k53_A Ferrous iron transport 66.0 3.1 0.00011 39.1 2.9 23 228-251 4-26 (271)
388 2ihy_A ABC transporter, ATP-bi 65.9 2.7 9.1E-05 40.1 2.3 24 228-252 48-71 (279)
389 2fv8_A H6, RHO-related GTP-bin 65.8 2.9 0.0001 37.2 2.5 23 228-251 26-48 (207)
390 1cr0_A DNA primase/helicase; R 65.7 2.8 9.4E-05 40.0 2.4 25 228-253 36-60 (296)
391 1moz_A ARL1, ADP-ribosylation 65.7 2.3 7.8E-05 36.7 1.7 24 226-250 17-40 (183)
392 3co5_A Putative two-component 65.5 1.7 5.9E-05 36.6 0.8 22 230-252 30-51 (143)
393 2ffh_A Protein (FFH); SRP54, s 65.4 2.8 9.5E-05 42.6 2.5 27 226-253 97-123 (425)
394 1sxj_C Activator 1 40 kDa subu 65.4 5.4 0.00019 38.7 4.6 25 227-252 46-70 (340)
395 2bcg_Y Protein YP2, GTP-bindin 65.3 3 0.0001 36.9 2.4 24 227-251 8-31 (206)
396 2qu8_A Putative nucleolar GTP- 65.3 3.2 0.00011 37.6 2.7 25 226-251 28-52 (228)
397 2www_A Methylmalonic aciduria 65.3 3.1 0.00011 41.0 2.8 26 226-252 73-98 (349)
398 4bas_A ADP-ribosylation factor 65.2 2.7 9.4E-05 36.7 2.2 24 226-250 16-39 (199)
399 2aka_B Dynamin-1; fusion prote 64.9 6 0.00021 37.3 4.7 25 226-251 25-49 (299)
400 1ksh_A ARF-like protein 2; sma 64.7 2.7 9.2E-05 36.5 2.0 25 226-251 17-41 (186)
401 2j0v_A RAC-like GTP-binding pr 64.6 3.1 0.00011 37.0 2.5 23 228-251 10-32 (212)
402 3crm_A TRNA delta(2)-isopenten 64.5 3.3 0.00011 40.4 2.7 24 228-252 6-29 (323)
403 4fcw_A Chaperone protein CLPB; 64.4 3.8 0.00013 39.0 3.2 25 227-252 47-71 (311)
404 2hup_A RAS-related protein RAB 64.3 3.2 0.00011 36.8 2.5 24 227-251 29-52 (201)
405 2gco_A H9, RHO-related GTP-bin 64.3 3.3 0.00011 36.7 2.5 23 228-251 26-48 (201)
406 2r8r_A Sensor protein; KDPD, P 64.2 3.5 0.00012 38.1 2.7 23 230-253 9-31 (228)
407 2b6h_A ADP-ribosylation factor 64.0 3.1 0.00011 36.6 2.2 22 228-250 30-51 (192)
408 2qgz_A Helicase loader, putati 63.9 3.1 0.00011 40.2 2.4 25 228-253 153-177 (308)
409 4gzl_A RAS-related C3 botulinu 63.8 3.3 0.00011 36.8 2.5 22 228-250 31-52 (204)
410 1svm_A Large T antigen; AAA+ f 63.7 6.3 0.00021 39.3 4.7 26 226-252 168-193 (377)
411 2il1_A RAB12; G-protein, GDP, 63.7 3 0.0001 36.6 2.1 22 228-250 27-48 (192)
412 2h57_A ADP-ribosylation factor 63.7 2.4 8.1E-05 37.1 1.4 23 228-251 22-44 (190)
413 2cjw_A GTP-binding protein GEM 63.7 3.3 0.00011 36.5 2.4 22 228-250 7-28 (192)
414 2h92_A Cytidylate kinase; ross 63.6 3.5 0.00012 37.1 2.6 24 228-252 4-27 (219)
415 4eaq_A DTMP kinase, thymidylat 63.4 3.8 0.00013 37.7 2.8 27 227-254 26-52 (229)
416 2eyu_A Twitching motility prot 63.3 3.6 0.00012 38.7 2.7 24 228-252 26-49 (261)
417 3cph_A RAS-related protein SEC 63.3 3.3 0.00011 36.7 2.4 24 227-251 20-43 (213)
418 1ofh_A ATP-dependent HSL prote 63.2 3.5 0.00012 39.0 2.7 24 229-253 52-75 (310)
419 2pjz_A Hypothetical protein ST 63.2 3.2 0.00011 39.2 2.3 23 228-251 31-53 (263)
420 1tq4_A IIGP1, interferon-induc 63.2 4.5 0.00015 40.9 3.5 24 226-250 68-91 (413)
421 3bh0_A DNAB-like replicative h 63.1 9.7 0.00033 36.7 5.8 52 228-282 69-120 (315)
422 1ega_A Protein (GTP-binding pr 63.1 3.5 0.00012 39.6 2.6 23 228-251 9-31 (301)
423 3ug7_A Arsenical pump-driving 62.9 5.7 0.00019 39.0 4.2 26 225-250 23-48 (349)
424 4a1f_A DNAB helicase, replicat 62.8 8.8 0.0003 37.6 5.5 52 228-282 47-98 (338)
425 2fu5_C RAS-related protein RAB 62.6 2.3 7.8E-05 36.8 1.1 23 227-250 8-30 (183)
426 2f7s_A C25KG, RAS-related prot 62.6 3.2 0.00011 37.1 2.1 23 227-250 25-47 (217)
427 1jwy_B Dynamin A GTPase domain 62.4 6.7 0.00023 37.4 4.5 24 226-250 23-46 (315)
428 3kta_A Chromosome segregation 62.3 3.9 0.00013 35.5 2.6 23 229-252 28-50 (182)
429 2bbs_A Cystic fibrosis transme 62.2 3.5 0.00012 39.5 2.4 24 228-252 65-88 (290)
430 3q3j_B RHO-related GTP-binding 61.9 3.6 0.00012 37.0 2.4 22 229-251 29-50 (214)
431 2dr3_A UPF0273 protein PH0284; 61.9 8.3 0.00028 35.0 4.9 23 228-251 24-46 (247)
432 2obl_A ESCN; ATPase, hydrolase 61.8 4 0.00014 40.3 2.8 25 228-253 72-96 (347)
433 2q6t_A DNAB replication FORK h 61.8 23 0.0008 35.8 8.7 54 228-283 201-254 (444)
434 2xtp_A GTPase IMAP family memb 61.6 4.3 0.00015 37.7 2.9 24 226-250 21-44 (260)
435 3iev_A GTP-binding protein ERA 61.6 4 0.00014 39.4 2.7 26 225-251 8-33 (308)
436 3t5d_A Septin-7; GTP-binding p 61.5 3 0.0001 39.3 1.8 21 229-250 10-30 (274)
437 1um8_A ATP-dependent CLP prote 61.4 3.9 0.00013 40.4 2.7 25 229-254 74-98 (376)
438 2v9p_A Replication protein E1; 61.3 3.9 0.00013 39.6 2.6 24 228-252 127-150 (305)
439 3ez9_A Para; DNA binding, wing 61.0 2.9 9.8E-05 42.0 1.6 28 225-252 109-136 (403)
440 3zvl_A Bifunctional polynucleo 60.7 4.4 0.00015 41.0 2.9 26 226-252 257-282 (416)
441 2qm8_A GTPase/ATPase; G protei 60.5 6.1 0.00021 38.7 3.9 27 225-252 53-79 (337)
442 1t9h_A YLOQ, probable GTPase E 60.5 2.8 9.6E-05 40.6 1.4 46 71-118 83-129 (307)
443 3m6a_A ATP-dependent protease 60.5 4.1 0.00014 42.8 2.7 28 227-255 108-135 (543)
444 3nh6_A ATP-binding cassette SU 60.4 3.4 0.00012 40.0 2.0 23 228-251 81-103 (306)
445 2yv5_A YJEQ protein; hydrolase 59.9 4 0.00014 39.3 2.3 21 228-249 166-186 (302)
446 1p5z_B DCK, deoxycytidine kina 59.7 3 0.0001 39.0 1.4 26 226-252 23-48 (263)
447 1lw7_A Transcriptional regulat 59.5 4.1 0.00014 40.3 2.4 25 227-252 170-194 (365)
448 3jvv_A Twitching mobility prot 59.4 6.1 0.00021 39.1 3.6 110 229-349 125-234 (356)
449 3hws_A ATP-dependent CLP prote 59.4 4.5 0.00015 39.8 2.7 25 228-253 52-76 (363)
450 1wf3_A GTP-binding protein; GT 59.3 4.5 0.00015 38.9 2.6 23 228-251 8-30 (301)
451 2g3y_A GTP-binding protein GEM 59.2 4 0.00014 36.9 2.2 21 228-249 38-58 (211)
452 3gj0_A GTP-binding nuclear pro 59.2 3.6 0.00012 36.9 1.8 23 228-251 16-39 (221)
453 3lxw_A GTPase IMAP family memb 59.1 4.1 0.00014 37.8 2.3 25 226-251 20-44 (247)
454 2x77_A ADP-ribosylation factor 59.0 3.6 0.00012 35.8 1.7 23 227-250 22-44 (189)
455 2ce7_A Cell division protein F 59.0 4.5 0.00015 41.8 2.7 24 230-254 52-75 (476)
456 3iby_A Ferrous iron transport 58.9 4.8 0.00016 37.7 2.7 23 228-251 2-24 (256)
457 2dby_A GTP-binding protein; GD 58.9 4.3 0.00015 40.4 2.4 22 229-251 3-24 (368)
458 3a8t_A Adenylate isopentenyltr 58.8 4.7 0.00016 39.6 2.7 25 228-253 41-65 (339)
459 2qag_A Septin-2, protein NEDD5 58.7 3.6 0.00012 40.7 1.8 21 230-251 40-60 (361)
460 2qtf_A Protein HFLX, GTP-bindi 58.7 4.4 0.00015 40.2 2.5 26 225-251 177-202 (364)
461 2yc2_C IFT27, small RAB-relate 58.6 2.5 8.5E-05 37.3 0.6 23 228-251 21-43 (208)
462 3cr8_A Sulfate adenylyltranfer 58.5 4.4 0.00015 42.7 2.5 25 228-253 370-394 (552)
463 2qag_B Septin-6, protein NEDD5 58.2 4.4 0.00015 41.2 2.4 21 230-251 45-65 (427)
464 3cpj_B GTP-binding protein YPT 58.1 4.5 0.00016 36.4 2.3 24 227-251 13-36 (223)
465 2dhr_A FTSH; AAA+ protein, hex 57.7 4.9 0.00017 41.7 2.7 45 335-379 168-215 (499)
466 2bjv_A PSP operon transcriptio 57.7 4.7 0.00016 37.5 2.4 23 230-253 32-54 (265)
467 3io3_A DEHA2D07832P; chaperone 57.7 5 0.00017 39.6 2.7 27 225-252 16-42 (348)
468 2vhj_A Ntpase P4, P4; non- hyd 57.6 4.9 0.00017 39.3 2.5 22 229-251 125-146 (331)
469 2rcn_A Probable GTPase ENGC; Y 57.2 4.6 0.00016 40.0 2.3 24 228-252 216-239 (358)
470 3tui_C Methionine import ATP-b 56.7 4.8 0.00016 40.0 2.3 22 228-250 55-76 (366)
471 1ni3_A YCHF GTPase, YCHF GTP-b 56.5 5.4 0.00018 40.0 2.7 23 227-250 20-42 (392)
472 1pzn_A RAD51, DNA repair and r 56.3 5.3 0.00018 39.3 2.6 24 228-252 132-155 (349)
473 3gmt_A Adenylate kinase; ssgci 56.0 5.5 0.00019 36.9 2.5 24 228-252 9-32 (230)
474 3b1v_A Ferrous iron uptake tra 56.0 5.4 0.00018 37.8 2.5 22 228-250 4-25 (272)
475 2qag_C Septin-7; cell cycle, c 55.7 4.5 0.00015 41.0 2.0 22 230-252 34-55 (418)
476 1jal_A YCHF protein; nucleotid 55.4 5.3 0.00018 39.7 2.4 22 229-251 4-25 (363)
477 2r9v_A ATP synthase subunit al 55.3 5.1 0.00018 41.5 2.3 23 229-252 177-200 (515)
478 2woo_A ATPase GET3; tail-ancho 55.3 5.8 0.0002 38.6 2.7 25 228-252 19-43 (329)
479 3bgw_A DNAB-like replicative h 55.2 9.6 0.00033 38.8 4.4 50 229-281 199-248 (444)
480 2r44_A Uncharacterized protein 55.0 5.3 0.00018 38.5 2.3 24 230-254 49-72 (331)
481 2qe7_A ATP synthase subunit al 54.9 5.4 0.00019 41.2 2.5 23 229-252 164-187 (502)
482 1u0l_A Probable GTPase ENGC; p 54.9 5.3 0.00018 38.3 2.3 23 228-251 170-192 (301)
483 3pxi_A Negative regulator of g 54.7 10 0.00034 41.4 4.7 38 213-252 188-225 (758)
484 3exa_A TRNA delta(2)-isopenten 54.7 6.5 0.00022 38.2 2.9 24 228-252 4-27 (322)
485 2gza_A Type IV secretion syste 54.7 5.5 0.00019 39.4 2.4 24 228-252 176-199 (361)
486 2e87_A Hypothetical protein PH 54.1 6.3 0.00021 38.7 2.7 26 225-251 165-190 (357)
487 1z47_A CYSA, putative ABC-tran 54.0 5.6 0.00019 39.3 2.3 23 228-251 42-64 (355)
488 3l0o_A Transcription terminati 53.7 16 0.00054 36.7 5.5 44 228-272 176-219 (427)
489 4hlc_A DTMP kinase, thymidylat 53.4 7.9 0.00027 34.9 3.1 25 229-254 4-28 (205)
490 3fdi_A Uncharacterized protein 53.2 7.8 0.00027 34.7 3.0 26 228-254 7-32 (201)
491 3th5_A RAS-related C3 botulinu 58.4 2.8 9.7E-05 37.1 0.0 22 228-250 31-52 (204)
492 3fvq_A Fe(3+) IONS import ATP- 53.0 6.1 0.00021 39.1 2.4 23 228-251 31-53 (359)
493 2woj_A ATPase GET3; tail-ancho 53.0 6.5 0.00022 38.8 2.6 25 227-252 17-42 (354)
494 2yyz_A Sugar ABC transporter, 52.9 6 0.0002 39.2 2.3 23 228-251 30-52 (359)
495 3ld9_A DTMP kinase, thymidylat 52.7 7.4 0.00025 35.7 2.8 27 227-254 21-47 (223)
496 3umf_A Adenylate kinase; rossm 52.7 8.2 0.00028 35.3 3.1 27 225-252 27-53 (217)
497 4dkx_A RAS-related protein RAB 52.5 6.5 0.00022 35.7 2.4 20 230-250 16-35 (216)
498 3a1s_A Iron(II) transport prot 52.5 6.4 0.00022 36.8 2.4 22 228-250 6-27 (258)
499 1g29_1 MALK, maltose transport 52.4 6.1 0.00021 39.3 2.3 23 228-251 30-52 (372)
500 2ewv_A Twitching motility prot 52.4 7.1 0.00024 38.8 2.8 25 227-252 136-160 (372)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.4e-52 Score=383.74 Aligned_cols=176 Identities=35% Similarity=0.693 Sum_probs=159.9
Q ss_pred CCCCCCCCCCceecCceEEecccCccCcChHHHHHHHHhcCCCeEEEeC-CcCCCCCchHHHHHHHhhccceEEEeeccc
Q 011431 8 SSSSRRLRDQWRYKHDVFVTFSGEDIRENFGSYLFAALFRESVKTFRDE-QIRRGDEIMPALLQAIEESKISLVIFSKRF 86 (486)
Q Consensus 8 ~~~~~~~~~~~~y~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~~~d~-~~~~g~~i~~~i~~~I~~s~~~ivv~S~~y 86 (486)
|+++|+++++++| ||||||||+|+|++|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||
T Consensus 24 s~~~s~~~~~~~y--DVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nY 101 (204)
T 3ozi_A 24 STNPSGSFPSVEY--EVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGY 101 (204)
T ss_dssp ----------CCC--CEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTG
T ss_pred CCCCcCCCCCcCC--eEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccc
Confidence 4555667778989 9999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHH-hc-CCCEEEEEEeeecCCccccccCchHHHHHHhHhhCCCchhhccHHHHHHHhhhccCCCCC
Q 011431 87 AFSRWCLEELVKIIEC-NK-LYQTVIPVFYKVLPSDVRNQLGSFGEAFLEHEKSHDLRPKVGRWRDALREASDLAGWDSN 164 (486)
Q Consensus 87 ~~S~wcl~El~~i~~~-~~-~~~~v~Pify~v~~s~vr~q~g~f~~~f~~~~~~~~~~e~i~~Wr~AL~eva~~~G~~~~ 164 (486)
++|.||++||++|++| ++ .+++||||||+|+|++||+|+|.||++|.+|+.++. .+++++|+.||++||+++||++.
T Consensus 102 a~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~-~~~v~~Wr~AL~~va~lsG~~~~ 180 (204)
T 3ozi_A 102 ADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD-GQTIQNWKDALKKVGDLKGWHIG 180 (204)
T ss_dssp GGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC-HHHHHHHHHHHHHHHTSCBEEEC
T ss_pred ccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC-HHHHHHHHHHHHHHhccCceecC
Confidence 9999999999999999 54 689999999999999999999999999999999886 68999999999999999999999
Q ss_pred CCCCcchhhhhHHHhHHhhhhh
Q 011431 165 VTRPESKLTDEIVNGVVENLKS 186 (486)
Q Consensus 165 ~~~~E~~~I~~IV~~V~~~L~~ 186 (486)
...+|+++|++||++|..+|+.
T Consensus 181 ~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 181 KNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcc
Confidence 9988999999999999999863
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=9.1e-51 Score=367.67 Aligned_cols=168 Identities=40% Similarity=0.703 Sum_probs=143.8
Q ss_pred CCceecCceEEecccCccCcChHHHHHHHHhcCCCeEEEeC-CcCCCCCchHHHHHHHhhccceEEEeecccccChhhHH
Q 011431 16 DQWRYKHDVFVTFSGEDIRENFGSYLFAALFRESVKTFRDE-QIRRGDEIMPALLQAIEESKISLVIFSKRFAFSRWCLE 94 (486)
Q Consensus 16 ~~~~y~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~~~d~-~~~~g~~i~~~i~~~I~~s~~~ivv~S~~y~~S~wcl~ 94 (486)
.++.| ||||||||+|+|++|++||+++|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|||+||++|+||++
T Consensus 5 ~~~~y--DVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 5 TATKY--DVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp --CCE--EEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCC--eEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence 47889 9999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hcCCCEEEEEEeeecCCccccccCchHHHHHHhHhhCCCchhhccHHHHHHHhhhccCCCCCCCCCcchhh
Q 011431 95 ELVKIIEC-NKLYQTVIPVFYKVLPSDVRNQLGSFGEAFLEHEKSHDLRPKVGRWRDALREASDLAGWDSNVTRPESKLT 173 (486)
Q Consensus 95 El~~i~~~-~~~~~~v~Pify~v~~s~vr~q~g~f~~~f~~~~~~~~~~e~i~~Wr~AL~eva~~~G~~~~~~~~E~~~I 173 (486)
||++|++| ++.++.||||||+|+|++||+|+|+||++|.+++.+.. .+++++|+.||++||+++||++. ++|+++|
T Consensus 83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~-~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i 159 (176)
T 3jrn_A 83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRED-PEKVLKWRQALTNFAQLSGDCSG--DDDSKLV 159 (176)
T ss_dssp HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTSCCEECC--SCHHHHH
T ss_pred HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccC-HHHHHHHHHHHHHHhcccceecC--CCHHHHH
Confidence 99999999 88999999999999999999999999999999999844 78999999999999999999994 6799999
Q ss_pred hhHHHhHHhhhhhhh
Q 011431 174 DEIVNGVVENLKSFA 188 (486)
Q Consensus 174 ~~IV~~V~~~L~~~~ 188 (486)
++||++|..+|....
T Consensus 160 ~~Iv~~v~~~l~~~~ 174 (176)
T 3jrn_A 160 DKIANEISNKKTIYA 174 (176)
T ss_dssp HHHHHHHHTTCC---
T ss_pred HHHHHHHHHHhcCCC
Confidence 999999999987543
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=4.5e-31 Score=236.67 Aligned_cols=117 Identities=20% Similarity=0.364 Sum_probs=108.8
Q ss_pred CCCCceecCceEEecccCccCcChHHHHHHHHhcCCCeEEEeC-CcCCCCCchHHHHHHHhhccceEEEeecccccChhh
Q 011431 14 LRDQWRYKHDVFVTFSGEDIRENFGSYLFAALFRESVKTFRDE-QIRRGDEIMPALLQAIEESKISLVIFSKRFAFSRWC 92 (486)
Q Consensus 14 ~~~~~~y~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~~~d~-~~~~g~~i~~~i~~~I~~s~~~ivv~S~~y~~S~wc 92 (486)
.++.++| ||||||++.| +..|+.+|+.+|+++||++|+|+ ++.+|+.+.++|.++|++|+++|+|||++|++|.||
T Consensus 15 ~~~~~~~--dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc 91 (154)
T 3h16_A 15 LTSAPPH--DIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWP 91 (154)
T ss_dssp ---CCSE--EEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCC
T ss_pred cCCCCCc--eEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHH
Confidence 4667888 9999999999 67899999999999999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hcCCCEEEEEEeeecCCccccccCchHHHHH
Q 011431 93 LEELVKIIEC-NKLYQTVIPVFYKVLPSDVRNQLGSFGEAFL 133 (486)
Q Consensus 93 l~El~~i~~~-~~~~~~v~Pify~v~~s~vr~q~g~f~~~f~ 133 (486)
++||..+++| ...++.||||||+++|++||+|.|.|++.|.
T Consensus 92 ~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~ 133 (154)
T 3h16_A 92 QKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLA 133 (154)
T ss_dssp HHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHh
Confidence 9999999999 7778899999999999999999999987654
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.88 E-value=3.6e-25 Score=195.85 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=78.1
Q ss_pred CCCCceecCceEEecccCccCcChHHHHHHHHhc--CCCeEEEeC-CcCCCCCchHHHHHHHhhccceEEEeecccccCh
Q 011431 14 LRDQWRYKHDVFVTFSGEDIRENFGSYLFAALFR--ESVKTFRDE-QIRRGDEIMPALLQAIEESKISLVIFSKRFAFSR 90 (486)
Q Consensus 14 ~~~~~~y~~dVFis~~~~D~~~~f~~~L~~~L~~--~gi~~~~d~-~~~~g~~i~~~i~~~I~~s~~~ivv~S~~y~~S~ 90 (486)
....+.| ||||||+++|+ .|+.+|+.+|++ .|+++|+|+ ++.+|+.+.++|.++|++|+.+|+|||+||++|.
T Consensus 5 ~r~~k~Y--DvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~ 80 (146)
T 3ub2_A 5 SRWSKDY--DVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP 80 (146)
T ss_dssp CTTSSSE--EEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred CCCCCcc--eEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence 3456789 99999999997 479999999998 599999998 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-hcCCCEEEEEEeeecCCc
Q 011431 91 WCLEELVKIIEC-NKLYQTVIPVFYKVLPSD 120 (486)
Q Consensus 91 wcl~El~~i~~~-~~~~~~v~Pify~v~~s~ 120 (486)
||+.||..++.+ ......||||||++++.+
T Consensus 81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~ 111 (146)
T 3ub2_A 81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAA 111 (146)
T ss_dssp HHHHHHHHHHHTSSSSSSEEEEEECSCCGGG
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEcCCChhh
Confidence 999999999998 334447889999987544
No 5
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.87 E-value=1.1e-22 Score=218.28 Aligned_cols=158 Identities=13% Similarity=0.001 Sum_probs=115.1
Q ss_pred hHHHHHHHhhc--CCCceeeeeeeccCccchhHHHHHHHh----hhccccccceEEEEeeec----cHHHHHHHHhhhhc
Q 011431 213 LLDEVLSLLRN--AEGYRSYRCWLLCPLFSELRVLTNDVH----QLMDNYENSDVTLAKFEG----EVKKLDQRLLRFLE 282 (486)
Q Consensus 213 ~l~~v~~ll~~--~~~~~vi~I~GmGgGvGKTTLa~~vy~----~~~~~F~~~~~~~v~~~~----~l~~lqk~ll~~L~ 282 (486)
-++++..+|.. ..++++|+||||| |+||||||+.+|+ ++..+|+...|+ .++. ++..+++.++..+.
T Consensus 136 ~~~~l~~~L~~~~~~~~~vv~I~G~g-GvGKTtLA~~v~~~~~~~~~~~F~~~~wv--~vs~~~~~~~~~~~~~il~~l~ 212 (549)
T 2a5y_B 136 HVDRVIKKLDEMCDLDSFFLFLHGRA-GSGKSVIASQALSKSDQLIGINYDSIVWL--KDSGTAPKSTFDLFTDILLMLK 212 (549)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEEECST-TSSHHHHHHHHHHHCSSTBTTTBSEEEEE--ECCCCSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccCCCceEEEEEcCC-CCCHHHHHHHHHHhhhHHHhccCCcEEEE--EECCCCCCCHHHHHHHHHHHHh
Confidence 34555555522 3468999999999 9999999999997 677788765554 4444 56778889998886
Q ss_pred cccc--ccccccc---cccccccccccccCc-ceeeceecccCHHHHHHHhcCCCCCCCCCEEEeeCCccccccccccCC
Q 011431 283 SVDK--HVASYDR---YGSASFEQPRPQTTS-AAHPYVEDVIDDAYMEDITDDSSPSLNLSRINSTSRFEQLWPETISAT 356 (486)
Q Consensus 283 ~~d~--~~~~~~~---~g~~s~l~~~L~~tK-r~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~~ 356 (486)
.... ...+.+. ..+...+++.|.+ + |+||||||||+..++ .+. ..+||+||||||++.|+..+. ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~-~~ 284 (549)
T 2a5y_B 213 SEDDLLNFPSVEHVTSVVLKRMICNALID-RPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAAS-QT 284 (549)
T ss_dssp TTSCCTTCCCCTTCCHHHHHHHHHHHHTT-STTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCC-SC
T ss_pred cCcccccccccccccHHHHHHHHHHHHcC-CCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcC-CC
Confidence 5321 1111111 1123567788888 6 999999999998876 221 237999999999999984321 13
Q ss_pred CceEecCCCCCchhhhhhcccCCCc
Q 011431 357 DTCTEDVTVDNSPSLNLSSCNSSST 381 (486)
Q Consensus 357 ~~~y~v~~L~~~es~~LF~~~a~~k 381 (486)
..+|+|++|+.+|||+||+++||..
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~ 309 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPM 309 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCC
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCC
Confidence 4689999999999999999999874
No 6
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.83 E-value=4e-22 Score=177.17 Aligned_cols=99 Identities=20% Similarity=0.289 Sum_probs=90.0
Q ss_pred CCceecCceEEecccCccCcChHHH-HHHHHhcC--CCeEEEeC-CcCCCCCchHHHHHHHhhccceEEEeecccccChh
Q 011431 16 DQWRYKHDVFVTFSGEDIRENFGSY-LFAALFRE--SVKTFRDE-QIRRGDEIMPALLQAIEESKISLVIFSKRFAFSRW 91 (486)
Q Consensus 16 ~~~~y~~dVFis~~~~D~~~~f~~~-L~~~L~~~--gi~~~~d~-~~~~g~~i~~~i~~~I~~s~~~ivv~S~~y~~S~w 91 (486)
.++.| ||||||+++|+ .|+.+ |+.+|++. |+++|+|+ ++.+|+++.++|.++|++|+.+|+|||++|++|.|
T Consensus 2 ~~~~y--DvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~w 77 (149)
T 1fyx_A 2 RNIXY--DAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEW 77 (149)
T ss_dssp CSCCE--EEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHT
T ss_pred CCccc--eEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccch
Confidence 35678 99999999996 79996 99999986 99999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH--hcCCCEEEEEEee-ecC
Q 011431 92 CLEELVKIIEC--NKLYQTVIPVFYK-VLP 118 (486)
Q Consensus 92 cl~El~~i~~~--~~~~~~v~Pify~-v~~ 118 (486)
|+.||..++.+ +.+++.||||||+ +.+
T Consensus 78 c~~El~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 78 XKYELDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp HHHHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 99999999864 6677889999995 444
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.82 E-value=1.4e-21 Score=178.37 Aligned_cols=99 Identities=21% Similarity=0.331 Sum_probs=86.6
Q ss_pred CCCCceecCceEEecccCccCcChHH-HHHHHHhc--CCCeEEEeC-CcCCCCCchHHHHHHHhhccceEEEeecccccC
Q 011431 14 LRDQWRYKHDVFVTFSGEDIRENFGS-YLFAALFR--ESVKTFRDE-QIRRGDEIMPALLQAIEESKISLVIFSKRFAFS 89 (486)
Q Consensus 14 ~~~~~~y~~dVFis~~~~D~~~~f~~-~L~~~L~~--~gi~~~~d~-~~~~g~~i~~~i~~~I~~s~~~ivv~S~~y~~S 89 (486)
...++.| ||||||+++|+ .|+. +|+.+|++ .|+++|+|+ ++.+|+++.++|.++|++|+.+|+|||+||++|
T Consensus 30 ~~~~~~y--DvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S 105 (178)
T 2j67_A 30 LKRNVRF--HAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQN 105 (178)
T ss_dssp CCCSCCE--EEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHH
T ss_pred cCCCccc--eEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEeccccccc
Confidence 4467789 99999999996 7997 59999998 899999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHH--hcCCCEEEEEEeee
Q 011431 90 RWCLEELVKIIEC--NKLYQTVIPVFYKV 116 (486)
Q Consensus 90 ~wcl~El~~i~~~--~~~~~~v~Pify~v 116 (486)
.||+.||..++.+ +..++.||||||+-
T Consensus 106 ~wc~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 106 EWCHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp TGGGTHHHHTTCC-------CEEEEESSC
T ss_pred chHHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 9999999999976 56678999999964
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.82 E-value=4.4e-21 Score=172.09 Aligned_cols=99 Identities=16% Similarity=0.271 Sum_probs=88.9
Q ss_pred eecCceEEecccCcc---------CcChHHHHHH-HHh-cCCCeEEEeC-CcCCCCCchHHHHHHHhhccceEEEeeccc
Q 011431 19 RYKHDVFVTFSGEDI---------RENFGSYLFA-ALF-RESVKTFRDE-QIRRGDEIMPALLQAIEESKISLVIFSKRF 86 (486)
Q Consensus 19 ~y~~dVFis~~~~D~---------~~~f~~~L~~-~L~-~~gi~~~~d~-~~~~g~~i~~~i~~~I~~s~~~ivv~S~~y 86 (486)
.| ||||||+++|+ +..|+.+|.. +|+ +.|+++|+|+ |+.+|+.+.++|.++|++|+.+|+|||+||
T Consensus 2 ~y--DaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y 79 (159)
T 1t3g_A 2 DY--DAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNY 79 (159)
T ss_dssp CB--SEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHH
T ss_pred Cc--eEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccch
Confidence 58 99999999997 3579998776 699 7999999998 999999999999999999999999999999
Q ss_pred c-cChhhHHHHHHHHHH--hcCCCEEEEEEeeecCC
Q 011431 87 A-FSRWCLEELVKIIEC--NKLYQTVIPVFYKVLPS 119 (486)
Q Consensus 87 ~-~S~wcl~El~~i~~~--~~~~~~v~Pify~v~~s 119 (486)
+ .|.||+.|+..++.+ ..+++.||||||.-.+.
T Consensus 80 ~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 80 VVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 7 999999999999998 67788999999875443
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.82 E-value=1.6e-21 Score=175.09 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=90.9
Q ss_pred CCCCceecCceEEecccCccCcChHHHHHHHHhcC--CCeEEEeC-CcCCCCCchHHHHHHHh-hccceEEEeecccccC
Q 011431 14 LRDQWRYKHDVFVTFSGEDIRENFGSYLFAALFRE--SVKTFRDE-QIRRGDEIMPALLQAIE-ESKISLVIFSKRFAFS 89 (486)
Q Consensus 14 ~~~~~~y~~dVFis~~~~D~~~~f~~~L~~~L~~~--gi~~~~d~-~~~~g~~i~~~i~~~I~-~s~~~ivv~S~~y~~S 89 (486)
....+.| ||||||+++| ..|+.+|+.+|++. |+++|+|+ ++.+|+.+.++|.++|+ +|+.+|+|||++|++|
T Consensus 11 ~~~~~~y--DvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S 86 (160)
T 2js7_A 11 GHMPERF--DAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQS 86 (160)
T ss_dssp SCCTTCE--EEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHS
T ss_pred CCCCcce--EEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcC
Confidence 3446789 9999999999 47999999999985 69999998 99999999999999999 7999999999999999
Q ss_pred hhhHHHHHHHHHH--hcCCCEEEEEEeeecC
Q 011431 90 RWCLEELVKIIEC--NKLYQTVIPVFYKVLP 118 (486)
Q Consensus 90 ~wcl~El~~i~~~--~~~~~~v~Pify~v~~ 118 (486)
.||+.|+..++++ ...++.||||||+.-+
T Consensus 87 ~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 87 KECDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999999998 4556789999997543
No 10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.73 E-value=8.1e-19 Score=194.77 Aligned_cols=156 Identities=10% Similarity=-0.056 Sum_probs=104.4
Q ss_pred hhHHHHHHHhhcCCCceeeeeeeccCccchhHHHHHHHh--hhccccccceEEEEeee--ccHHHHHHHHhhhhcccccc
Q 011431 212 SLLDEVLSLLRNAEGYRSYRCWLLCPLFSELRVLTNDVH--QLMDNYENSDVTLAKFE--GEVKKLDQRLLRFLESVDKH 287 (486)
Q Consensus 212 ~~l~~v~~ll~~~~~~~vi~I~GmGgGvGKTTLa~~vy~--~~~~~F~~~~~~~v~~~--~~l~~lqk~ll~~L~~~d~~ 287 (486)
..++++...|...++.++|+|+||| |+||||||+.+|+ ++..+|+.. +.|+.++ .+...+...++..|......
T Consensus 135 ~eLeeL~elL~~~d~~RVV~IvGmG-GIGKTTLAk~Vy~d~rV~~~Fd~g-V~WVsVs~~~d~~~IL~~Ll~lL~~i~~~ 212 (1221)
T 1vt4_I 135 QPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQIDPN 212 (1221)
T ss_dssp HHHHHHHHHHHHCCSSCEEEECCST-TSSHHHHHHHHHHHCHHHHHHSSC-EEEEECCCSSSHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhccCCCeEEEEEcCC-CccHHHHHHHHHHhhHHHHhCCCc-EEEEEeCCCCCHHHHHHHHHHHHhhcCcc
Confidence 3456666666544568999999999 9999999999997 467778763 3455444 34444444544433221100
Q ss_pred ----ccc-----cccccccccccccc---ccCcceeeceecccCHHHHHHHhcCCCCCCCCCEEEeeCCccccccccccC
Q 011431 288 ----VAS-----YDRYGSASFEQPRP---QTTSAAHPYVEDVIDDAYMEDITDDSSPSLNLSRINSTSRFEQLWPETISA 355 (486)
Q Consensus 288 ----~~~-----~~~~g~~s~l~~~L---~~tKr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~ 355 (486)
... .+.......|++.| .. ||+||||||||+..+|..+. +|||||||||++.++... .
T Consensus 213 ~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~-KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l--~ 282 (1221)
T 1vt4_I 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFL--S 282 (1221)
T ss_dssp STTTSCCCSSHHHHHHHHHHHHHHHHHHSTT-SSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHH--H
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhhcC-CCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhc--C
Confidence 000 00001123455554 45 89999999999988887752 699999999999997422 1
Q ss_pred CCceEecC------CCCCchhhhhhcccCC
Q 011431 356 TDTCTEDV------TVDNSPSLNLSSCNSS 379 (486)
Q Consensus 356 ~~~~y~v~------~L~~~es~~LF~~~a~ 379 (486)
....|+|+ .|+.+|||+||+++..
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 22367788 9999999999998843
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.69 E-value=2.2e-17 Score=192.22 Aligned_cols=159 Identities=10% Similarity=-0.014 Sum_probs=106.5
Q ss_pred hhHHHHHHHhh-cCCCceeeeeeeccCccchhHHHHHHHhhh---ccccccceEEEEeeecc----HHHHHHHHhhhhcc
Q 011431 212 SLLDEVLSLLR-NAEGYRSYRCWLLCPLFSELRVLTNDVHQL---MDNYENSDVTLAKFEGE----VKKLDQRLLRFLES 283 (486)
Q Consensus 212 ~~l~~v~~ll~-~~~~~~vi~I~GmGgGvGKTTLa~~vy~~~---~~~F~~~~~~~v~~~~~----l~~lqk~ll~~L~~ 283 (486)
..++++.++|. .+.++++|+|+||| |+||||||+++|++. ...|... +.|+.++.. +....+.++..|..
T Consensus 131 ~~~~~l~~~l~~~~~~~~~v~i~G~g-G~GKTtLa~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~l~~ 208 (1249)
T 3sfz_A 131 KLVHAIQQKLWKLNGEPGWVTIYGMA-GCGKSVLAAEAVRDHSLLEGCFSGG-VHWVSIGKQDKSGLLMKLQNLCMRLDQ 208 (1249)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECST-TSSHHHHHHHHTCCHHHHTTTSTTC-EEEEECCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhccCCCCEEEEEeCC-CCCHHHHHHHHhcChhHHHhhCCCe-EEEEEECCcCchHHHHHHHHHHHHhhh
Confidence 34566666553 35678999999999 999999999999873 4445443 456655542 22224445555543
Q ss_pred cccccc--ccccccccccccccccc-CcceeeceecccCHHHHHHHhcCCCCCCCCCEEEeeCCccccccccccCCCceE
Q 011431 284 VDKHVA--SYDRYGSASFEQPRPQT-TSAAHPYVEDVIDDAYMEDITDDSSPSLNLSRINSTSRFEQLWPETISATDTCT 360 (486)
Q Consensus 284 ~d~~~~--~~~~~g~~s~l~~~L~~-tKr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~~~~~y 360 (486)
...... ..+.......++..|.. .+|+||||||||+..+|.. +++|||||||||++.|+..+ ......|
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~-------~~~~~~ilvTtR~~~~~~~~-~~~~~~~ 280 (1249)
T 3sfz_A 209 EESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQILLTTRDKSVTDSV-MGPKHVV 280 (1249)
T ss_dssp TCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT-------TCSSCEEEEEESSTTTTTTC-CSCBCCE
T ss_pred hcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHh-------hcCCCEEEEEcCCHHHHHhh-cCCceEE
Confidence 221100 11111223445556655 1499999999999877654 35799999999999997422 2345689
Q ss_pred ecCC-CCCchhhhhhcccCCC
Q 011431 361 EDVT-VDNSPSLNLSSCNSSS 380 (486)
Q Consensus 361 ~v~~-L~~~es~~LF~~~a~~ 380 (486)
++++ |+++|||+||+.+|+.
T Consensus 281 ~~~~~l~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 281 PVESGLGREKGLEILSLFVNM 301 (1249)
T ss_dssp ECCSSCCHHHHHHHHHHHHTS
T ss_pred EecCCCCHHHHHHHHHHhhCC
Confidence 9996 9999999999988864
No 12
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=156.82 Aligned_cols=157 Identities=10% Similarity=-0.015 Sum_probs=98.4
Q ss_pred hhHHHHHHHhhc-CCCceeeeeeeccCccchhHHHHHHHhhh---ccccccceEEEEeeecc-HHHHHHH---Hhhhhcc
Q 011431 212 SLLDEVLSLLRN-AEGYRSYRCWLLCPLFSELRVLTNDVHQL---MDNYENSDVTLAKFEGE-VKKLDQR---LLRFLES 283 (486)
Q Consensus 212 ~~l~~v~~ll~~-~~~~~vi~I~GmGgGvGKTTLa~~vy~~~---~~~F~~~~~~~v~~~~~-l~~lqk~---ll~~L~~ 283 (486)
..++.+...+.. ..+.++|+|+||| |+||||||..+|++. ...|... +.|+..... ...+... ++..+..
T Consensus 131 ~~l~~L~~~L~~~~~~~~~v~I~G~~-GiGKTtLa~~~~~~~~~~~~~f~~~-v~wv~~~~~~~~~~~~~l~~l~~~l~~ 208 (591)
T 1z6t_A 131 KLVNAIQQKLSKLKGEPGWVTIHGMA-GCGKSVLAAEAVRDHSLLEGCFPGG-VHWVSVGKQDKSGLLMKLQNLCTRLDQ 208 (591)
T ss_dssp HHHHHHHHHHTTSTTSCEEEEEECCT-TSSHHHHHHHHHCCHHHHHHHCTTC-EEEEEEESCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcccCCCceEEEEcCC-CCCHHHHHHHHHhchhHHHhhCCCc-eEEEECCCCchHHHHHHHHHHHHHhcc
Confidence 345566665542 3568899999999 999999999999864 4566422 355555432 2222222 2233331
Q ss_pred cccc--cccccccccccccccccccC-cceeeceecccCHHHHHHHhcCCCCCCCCCEEEeeCCccccccccccCCCceE
Q 011431 284 VDKH--VASYDRYGSASFEQPRPQTT-SAAHPYVEDVIDDAYMEDITDDSSPSLNLSRINSTSRFEQLWPETISATDTCT 360 (486)
Q Consensus 284 ~d~~--~~~~~~~g~~s~l~~~L~~t-Kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~~~~~y 360 (486)
.... ....+.......++..|... +++||||||+|+...+.. +++||+||||||+..++.... ...|
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~---~~~~ 278 (591)
T 1z6t_A 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVM---GPKY 278 (591)
T ss_dssp SCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCC---SCEE
T ss_pred ccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhcC---CCce
Confidence 1000 00001111223344455442 589999999999766543 356899999999999873321 3456
Q ss_pred ec---CCCCCchhhhhhcccCCC
Q 011431 361 ED---VTVDNSPSLNLSSCNSSS 380 (486)
Q Consensus 361 ~v---~~L~~~es~~LF~~~a~~ 380 (486)
++ ++|+.+||++||+..++.
T Consensus 279 ~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 279 VVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHTS
T ss_pred EeecCCCCCHHHHHHHHHHHhCC
Confidence 65 589999999999998875
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=162.73 Aligned_cols=100 Identities=23% Similarity=0.396 Sum_probs=90.3
Q ss_pred CCCceecCceEEecccCccCcChH-HHHHHHHhc-----CCCeEEEeC-CcCCCCCchHHHHHHHhhccceEEEeecccc
Q 011431 15 RDQWRYKHDVFVTFSGEDIRENFG-SYLFAALFR-----ESVKTFRDE-QIRRGDEIMPALLQAIEESKISLVIFSKRFA 87 (486)
Q Consensus 15 ~~~~~y~~dVFis~~~~D~~~~f~-~~L~~~L~~-----~gi~~~~d~-~~~~g~~i~~~i~~~I~~s~~~ivv~S~~y~ 87 (486)
...+.| ||||||+++|. .|| ..|...|+. .|+++|+++ |+.+|+.+.++|.++|++||..|+|+|++|+
T Consensus 666 ~~~~~y--d~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~ 741 (844)
T 3j0a_A 666 PDMYKY--DAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFL 741 (844)
T ss_dssp SSCCCC--SEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHH
T ss_pred ccceec--cEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccc
Confidence 346778 99999999995 577 679999985 589999999 9999999999999999999999999999999
Q ss_pred cChhhHHHHHHHHHH--hcCCCEEEEEEeeecC
Q 011431 88 FSRWCLEELVKIIEC--NKLYQTVIPVFYKVLP 118 (486)
Q Consensus 88 ~S~wcl~El~~i~~~--~~~~~~v~Pify~v~~ 118 (486)
.|.||..|+..++.+ +++++.||||||+.-|
T Consensus 742 ~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 742 RDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp HHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred cChHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 999999999999887 6778899999997554
No 14
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=98.63 E-value=8.1e-08 Score=72.47 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=60.2
Q ss_pred eeeeeeccccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc-ceeEEec
Q 011431 383 KEAIFKLEIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC-RTELVSF 451 (486)
Q Consensus 383 ~~~v~kv~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~-~~~~~~~ 451 (486)
++..+++.|+|..|. .++.+.+.+++|| ++.+|...++++|.|+ +++..+.+.+++.| .++++++
T Consensus 2 ~~~~~~vgm~C~~C~--~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~~~~~~~ 67 (68)
T 3iwl_A 2 PKHEFSVDMTCGGCA--EAVSRVLNKLGGV-KYDIDLPNKKVCIESE-HSMDTLLATLKKTGKTVSYLGL 67 (68)
T ss_dssp CEEEEEECCCSHHHH--HHHHHHHHHHCSE-EEEEETTTTEEEEEES-SCHHHHHHHHHTTCSCEEEEEC
T ss_pred ceEEEEECcCcHHHH--HHHHHHHHcCCCe-EEEEEcCCCEEEEEec-CCHHHHHHHHHHcCCceEecCC
Confidence 456778899999999 9999999999999 9999999999999998 99999999999988 7888875
No 15
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=98.46 E-value=6.9e-07 Score=68.07 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=60.0
Q ss_pred ceeeeeeccccccchhhHHHHHHHhhcCC-CeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc-ceeEEe
Q 011431 382 FKEAIFKLEIHHDNLEAWRAAFSIVSEFI-GITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC-RTELVS 450 (486)
Q Consensus 382 ~~~~v~kv~~~~~~~~~~~~a~k~~~~~~-Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~-~~~~~~ 450 (486)
++++.+++.|+|..|. .++.+.+.+++ ||.++.+|...++++|.+. +++..+.+.+++.| .++++.
T Consensus 4 m~~~~~~v~m~C~~C~--~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~~~~~~ 71 (73)
T 1cc8_A 4 IKHYQFNVVMTCSGCS--GAVNKVLTKLEPDVSKIDISLEKQLVDVYTT-LPYDFILEKIKKTGKEVRSGK 71 (73)
T ss_dssp CEEEEEEECCCSHHHH--HHHHHHHHTTTTSEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTSSCEEEEE
T ss_pred ceEEEEEEeeECHHHH--HHHHHHHHhCCCCceEEEEECCCCEEEEEEe-CCHHHHHHHHHHhCCCceeee
Confidence 4567788889999999 99999999999 9999999999999999997 99999999999988 666654
No 16
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.8e-06 Score=70.20 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=64.3
Q ss_pred ceeeeeeccccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc-ceeEEecCCCCCC
Q 011431 382 FKEAIFKLEIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC-RTELVSFGQAKEP 457 (486)
Q Consensus 382 ~~~~v~kv~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~-~~~~~~~~~~~~~ 457 (486)
.+++.++|.|+|..|. .++.+.+.+++||.++.+|...++++|.+. +++..+.+.|++.| .+.++...++..+
T Consensus 18 ~~~~~l~V~m~C~~C~--~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~-~~~~~i~~~i~~~Gy~~~~~~~~~~~~~ 91 (98)
T 2crl_A 18 LCTLEFAVQMTCQSCV--DAVRKSLQGVAGVQDVEVHLEDQMVLVHTT-LPSQEVQALLEGTGRQAVLKGMGSGQLQ 91 (98)
T ss_dssp CEEEEEEECCCSHHHH--HHHHHTTTTCTTCCEEEEETTTTEEEEEES-SCHHHHHHHHHTTTSCEEEEESCCCCCC
T ss_pred ceEEEEEEeeECHHHH--HHHHHHHHcCCCceEEEEECCCCEEEEEEe-CCHHHHHHHHHHhCCceEEccCCCCccC
Confidence 3566788889999999 999999999999999999999999999997 99999999999988 6888776655433
No 17
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.13 E-value=9e-07 Score=90.29 Aligned_cols=149 Identities=3% Similarity=-0.181 Sum_probs=80.1
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhcccc-----ccceEEEEee--eccHHHHHHHHhhhhccccccccccccccccc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLMDNY-----ENSDVTLAKF--EGEVKKLDQRLLRFLESVDKHVASYDRYGSAS 298 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F-----~~~~~~~v~~--~~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s 298 (486)
..-+|+|+|.+ |+|||||++.+++.....+ .. .+.++.. ......+...++..+.......+ ........
T Consensus 51 ~~~li~i~G~~-G~GKT~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~ 127 (412)
T 1w5s_A 51 VNMIYGSIGRV-GIGKTTLAKFTVKRVSEAAAKEGLTV-KQAYVNAFNAPNLYTILSLIVRQTGYPIQVRG-APALDILK 127 (412)
T ss_dssp EEEEEECTTCC-SSSHHHHHHHHHHHHHHHHHHTTCCE-EEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTT-CCHHHHHH
T ss_pred CEEEEeCcCcC-CCCHHHHHHHHHHHHHHHHhccCCce-eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-CCHHHHHH
Confidence 34455559999 9999999999998765432 21 1233332 13344456666666643110000 00001112
Q ss_pred ccccccc-cCcceeeceecccCH--------HHHHHHhcCCCC-C--C--CCCEEEeeCCccccccccc-------cCCC
Q 011431 299 FEQPRPQ-TTSAAHPYVEDVIDD--------AYMEDITDDSSP-S--L--NLSRINSTSRFEQLWPETI-------SATD 357 (486)
Q Consensus 299 ~l~~~L~-~tKr~LlVLDDVw~~--------~~~~~l~~~~~~-~--~--~GSrIIiTTR~~~V~~~~~-------~~~~ 357 (486)
.+.+.|. ..++++||+||+|.. ..+..+...... . + ....||+|||+.++..... ....
T Consensus 128 ~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~ 207 (412)
T 1w5s_A 128 ALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIG 207 (412)
T ss_dssp HHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCS
T ss_pred HHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcC
Confidence 3333443 126899999999863 223322211100 1 1 2334888988665421000 0012
Q ss_pred ceEecCCCCCchhhhhhccc
Q 011431 358 TCTEDVTVDNSPSLNLSSCN 377 (486)
Q Consensus 358 ~~y~v~~L~~~es~~LF~~~ 377 (486)
..+++++|+.++++++|...
T Consensus 208 ~~i~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 208 FKLHLPAYKSRELYTILEQR 227 (412)
T ss_dssp EEEECCCCCHHHHHHHHHHH
T ss_pred CeeeeCCCCHHHHHHHHHHH
Confidence 23899999999999999654
No 18
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=98.10 E-value=8.1e-06 Score=61.06 Aligned_cols=63 Identities=10% Similarity=0.177 Sum_probs=55.8
Q ss_pred eeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEE--eeccCHHHHHHHhhccc-ceeE
Q 011431 383 KEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVV--GDNFDVLSAGTKLNGLC-RTEL 448 (486)
Q Consensus 383 ~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~--G~~~d~~~~~~~l~k~~-~~~~ 448 (486)
|++.+++. |+|..|. ..+.+.+.+++||.++.+|...++++|. +. +++..+.+.+++.| .+++
T Consensus 2 ~~~~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~-~~~~~i~~~i~~~Gy~~~~ 68 (69)
T 4a4j_A 2 QTINLQLEGMDCTSCA--SSIERAIAKVPGVQSCQVNFALEQAVVSYHGE-TTPQILTDAVERAGYHARV 68 (69)
T ss_dssp EEEEEEEESCCSHHHH--HHHHHHHHTSTTEEEEEEETTTTEEEEEECTT-CCHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEECCeecHHHH--HHHHHHHhcCCCeEEEEEEecCCEEEEEECCC-CCHHHHHHHHHHcCCceEe
Confidence 45667775 9999999 9999999999999999999999999999 55 99999999999988 5554
No 19
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.06 E-value=1.1e-05 Score=74.99 Aligned_cols=72 Identities=8% Similarity=-0.095 Sum_probs=47.1
Q ss_pred cceeeceecccC--HHHHHHHhcCCCCCCCCCEEEeeCCccccccccccCCCceEecCCCCCchhhhhhcccCC
Q 011431 308 SAAHPYVEDVID--DAYMEDITDDSSPSLNLSRINSTSRFEQLWPETISATDTCTEDVTVDNSPSLNLSSCNSS 379 (486)
Q Consensus 308 Kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a~ 379 (486)
++.+|++||++. ...+..+.........+.++|+||+...-+..........+++++|+.++.++++...+.
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Confidence 578999999964 445555542111224578888888765533211111235789999999999999987654
No 20
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.05 E-value=6.7e-06 Score=82.99 Aligned_cols=147 Identities=10% Similarity=-0.076 Sum_probs=83.0
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhccccc------cceEEEEeee--c-cHHHHHHHHhhhhccccccccccccccc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLMDNYE------NSDVTLAKFE--G-EVKKLDQRLLRFLESVDKHVASYDRYGS 296 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~------~~~~~~v~~~--~-~l~~lqk~ll~~L~~~d~~~~~~~~~g~ 296 (486)
..+.+-|+|.. |+||||||+.+.+.+...+. ...+..+... . ....+...++..+.+.............
T Consensus 44 ~~~~vll~G~~-G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 44 VKFSNLFLGLT-GTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCEEEEEECT-TSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCcEEEECCC-CCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 44578899999 99999999999987643321 2223333221 1 3333445555555322110000000011
Q ss_pred ccccccccccCcceeeceecccCHHH-------HHHHhcCCCCCCCCCEEEeeCCccccc----cccccCCCceEecCCC
Q 011431 297 ASFEQPRPQTTSAAHPYVEDVIDDAY-------MEDITDDSSPSLNLSRINSTSRFEQLW----PETISATDTCTEDVTV 365 (486)
Q Consensus 297 ~s~l~~~L~~tKr~LlVLDDVw~~~~-------~~~l~~~~~~~~~GSrIIiTTR~~~V~----~~~~~~~~~~y~v~~L 365 (486)
...+...+.. ++.+|++||++.... +..+... . .+.+||+||+..... ......-...+++++|
T Consensus 123 ~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l 197 (384)
T 2qby_B 123 IDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPY 197 (384)
T ss_dssp HHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCC
T ss_pred HHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCC
Confidence 1233444555 445999999986432 2233321 1 678999999876321 1100111238999999
Q ss_pred CCchhhhhhcccC
Q 011431 366 DNSPSLNLSSCNS 378 (486)
Q Consensus 366 ~~~es~~LF~~~a 378 (486)
+.++..++|..++
T Consensus 198 ~~~~~~~il~~~~ 210 (384)
T 2qby_B 198 DAEQLKFILSKYA 210 (384)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999874
No 21
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=97.95 E-value=2.3e-05 Score=59.42 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=57.9
Q ss_pred eeeeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc-ceeEEe
Q 011431 383 KEAIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC-RTELVS 450 (486)
Q Consensus 383 ~~~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~-~~~~~~ 450 (486)
+++.+++ .|+|..|. .++.+.+.+++||.++.++...++++|..+ .+++..+.+.+++.| .+++++
T Consensus 2 ~~~~~~v~gm~C~~C~--~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (74)
T 3dxs_X 2 RKIQVGVTGMTCAACS--NSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILA 71 (74)
T ss_dssp EEEEEEEECCCSHHHH--HHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEE
T ss_pred cEEEEEECCcCCHHHH--HHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEcc
Confidence 4567777 49999999 999999999999999999999999999875 279999999999988 677665
No 22
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=97.93 E-value=1.6e-05 Score=60.36 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=57.8
Q ss_pred cceeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc-ceeEEe
Q 011431 381 TFKEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC-RTELVS 450 (486)
Q Consensus 381 k~~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~-~~~~~~ 450 (486)
.+++..+++. |+|..|. .++.+.+.+ +||.++.+|...++++|.++ ++..+.+.|++.| .+++.+
T Consensus 3 ~m~~~~~~v~gm~C~~C~--~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~--~~~~i~~~i~~~Gy~~~~~~ 69 (73)
T 3fry_A 3 SVEKIVLELSGLSCHHCV--ARVKKALEE-AGAKVEKVDLNEAVVAGNKE--DVDKYIKAVEAAGYQAKLRS 69 (73)
T ss_dssp CCEEEEEEEESSBCGGGH--HHHHHHHHH-TTCEEEEECSSEEEEEEEGG--GHHHHHHHHHHTTCEEEECC
T ss_pred ccEEEEEEECCCCCHHHH--HHHHHHhcc-CCcEEEEEEccCCEEEEEEC--CHHHHHHHHHHcCCceEecC
Confidence 4567788885 9999999 999999999 99999999999999999987 8999999999988 566554
No 23
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=97.72 E-value=9.8e-05 Score=69.16 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=61.2
Q ss_pred eeeeeeccccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc-ceeEEecCCC
Q 011431 383 KEAIFKLEIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC-RTELVSFGQA 454 (486)
Q Consensus 383 ~~~v~kv~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~-~~~~~~~~~~ 454 (486)
.++.++|.|+|..|. .++.+.+.+++||+++.+|...++++|.+. +++..+.+.+++.+ .+.+....++
T Consensus 6 ~~~~l~V~MtC~~Ca--~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~-~~~~~I~~aI~~~Gy~a~~~~~~~~ 75 (222)
T 1qup_A 6 YEATYAIPMHCENCV--NDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGKDAIIRGAGKP 75 (222)
T ss_dssp EEEEEECCCCSTTHH--HHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHHTTCCCEEECCSCT
T ss_pred eEEEEEEccccHHHH--HHHHHHHhcCCCeeEEEEEcCCCEEEEecc-CCHHHHHHHHHHcCCccccccCCCc
Confidence 456778889999999 999999999999999999999999999998 99999999999988 6777665443
No 24
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=97.65 E-value=5.6e-05 Score=55.63 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=50.1
Q ss_pred eec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc
Q 011431 387 FKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC 444 (486)
Q Consensus 387 ~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~ 444 (486)
+++ .|+|..|. .++.+.+.+.+||.++.+|...++++|.+. +++..+.+.+++.|
T Consensus 4 ~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~G 59 (66)
T 2roe_A 4 LKVEGMTCNHCV--MAVTKALKKVPGVEKVEVSLEKGEALVEGT-ADPKALVQAVEEEG 59 (66)
T ss_dssp EEEECCCSHHHH--HHHHHHHHTSTTCCCEEECSSSCBEEECSC-CCHHHHHHHHHTTT
T ss_pred EEECCeEcHHHH--HHHHHHHHcCCCeEEEEEEeCCCEEEECCC-CCHHHHHHHHHHcC
Confidence 455 49999999 999999999999999999999999999766 89999999999988
No 25
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=97.63 E-value=6.9e-05 Score=54.26 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=51.3
Q ss_pred eeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc
Q 011431 385 AIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC 444 (486)
Q Consensus 385 ~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~ 444 (486)
+.+++ .|+|..|. ..+.+.+.+++||.++.+|...++++|.+. +++..+.+.+++.|
T Consensus 3 ~~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~G 60 (64)
T 2xmm_A 3 IQLTVPTIACEACA--EAVTKAVQNEDAQATVQVDLTSKKVTITSA-LGEEQLRTAIASAG 60 (64)
T ss_dssp EEEECTTCCSHHHH--HHHHHHHHHHCTTCEEEECTTTCEEEEECS-SCHHHHHHHHHHTT
T ss_pred EEEEECCcCcHHHH--HHHHHHHhcCCCcEEEEEEecCCEEEEEec-CCHHHHHHHHHHcC
Confidence 34666 49999999 999999999999999999999999999987 99999999998876
No 26
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.60 E-value=0.0002 Score=65.43 Aligned_cols=145 Identities=5% Similarity=-0.079 Sum_probs=76.8
Q ss_pred HHHHHHhhcCCCceeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeee--ccHHHHHHHHhhhhccccccccccc
Q 011431 215 DEVLSLLRNAEGYRSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFE--GEVKKLDQRLLRFLESVDKHVASYD 292 (486)
Q Consensus 215 ~~v~~ll~~~~~~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~--~~l~~lqk~ll~~L~~~d~~~~~~~ 292 (486)
+.+...+... ....+-++|.. |.||||||+.+.+.+........+...... .....+...+......
T Consensus 27 ~~l~~~l~~~-~~~~~ll~G~~-G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 95 (226)
T 2chg_A 27 QRLKGYVERK-NIPHLLFSGPP-GTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART--------- 95 (226)
T ss_dssp HHHHHHHHTT-CCCCEEEECST-TSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS---------
T ss_pred HHHHHHHhCC-CCCeEEEECCC-CCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcc---------
Confidence 3444444332 22336799999 999999999998876333211112222211 1111111111111100
Q ss_pred ccccccccccccccCcceeeceecccCH--HHHHHHhcCCCCCCCCCEEEeeCCccccccccccCCCceEecCCCCCchh
Q 011431 293 RYGSASFEQPRPQTTSAAHPYVEDVIDD--AYMEDITDDSSPSLNLSRINSTSRFEQLWPETISATDTCTEDVTVDNSPS 370 (486)
Q Consensus 293 ~~g~~s~l~~~L~~tKr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~~~~~y~v~~L~~~es 370 (486)
...-.. +..+|++||++.. .....+....-....+.++|+||+...-+.......-..+++.+|+.++.
T Consensus 96 --------~~~~~~-~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~ 166 (226)
T 2chg_A 96 --------APIGGA-PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166 (226)
T ss_dssp --------CCSTTC-SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHH
T ss_pred --------cCCCcc-CceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHH
Confidence 001112 6789999999752 33333332110123567888888765532111111123789999999999
Q ss_pred hhhhcccCC
Q 011431 371 LNLSSCNSS 379 (486)
Q Consensus 371 ~~LF~~~a~ 379 (486)
..++...+.
T Consensus 167 ~~~l~~~~~ 175 (226)
T 2chg_A 167 KKRLLEICE 175 (226)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 27
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=97.56 E-value=0.00023 Score=67.69 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=61.6
Q ss_pred eeeeeeccccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc-ceeEEecCCC
Q 011431 383 KEAIFKLEIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC-RTELVSFGQA 454 (486)
Q Consensus 383 ~~~v~kv~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~-~~~~~~~~~~ 454 (486)
.++.++|.|+|..|. .++.+.+.+++||.++.+|...++++|.+. +++..+.+.|++.| .+.+....++
T Consensus 7 ~~~~l~V~MtC~~Ca--~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~-~~~~~I~~aIe~~Gy~a~~~~~~~~ 76 (249)
T 1jk9_B 7 YEATYAIPMHCENCV--NDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGKDAIIRGAGKP 76 (249)
T ss_dssp EEEEEECCCCSSSHH--HHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTTCCCEEEEESST
T ss_pred eeEEEEEeeccHHHH--HHHHHHHhccCCeeEEEEEcCCCeEEEecC-CCHHHHHHHHHHhCCCcccccCCcc
Confidence 456677889999999 999999999999999999999999999988 99999999999988 6777776554
No 28
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.56 E-value=4.3e-05 Score=76.67 Aligned_cols=152 Identities=7% Similarity=-0.098 Sum_probs=79.2
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhhccccc-cceEEEEeee--ccHHHHHHHHhhhhcccccccccccccccccccc
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQLMDNYE-NSDVTLAKFE--GEVKKLDQRLLRFLESVDKHVASYDRYGSASFEQ 301 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~-~~~~~~v~~~--~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~l~ 301 (486)
.....+.|+|.. |+|||||++.+.+.....+. ...+..+... .....+...++..+.......+ .........+.
T Consensus 43 ~~~~~vli~G~~-G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~l~ 120 (386)
T 2qby_A 43 EKPNNIFIYGLT-GTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTG-LSIAELYRRLV 120 (386)
T ss_dssp CCCCCEEEEECT-TSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSS-CCHHHHHHHHH
T ss_pred CCCCeEEEECCC-CCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-CCHHHHHHHHH
Confidence 345678899999 99999999999987654432 2222333211 1222334455544432100000 00000012222
Q ss_pred ccccc-CcceeeceecccCHH------HHHHHhcCCCC-CCCCCEEEeeCCccccccccc----cC-CCceEecCCCCCc
Q 011431 302 PRPQT-TSAAHPYVEDVIDDA------YMEDITDDSSP-SLNLSRINSTSRFEQLWPETI----SA-TDTCTEDVTVDNS 368 (486)
Q Consensus 302 ~~L~~-tKr~LlVLDDVw~~~------~~~~l~~~~~~-~~~GSrIIiTTR~~~V~~~~~----~~-~~~~y~v~~L~~~ 368 (486)
+.+.. .+..+|++|+++... .+..+....-. ...+..+|+||++........ .. ....+++++|+.+
T Consensus 121 ~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~ 200 (386)
T 2qby_A 121 KAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAE 200 (386)
T ss_dssp HHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHH
T ss_pred HHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHH
Confidence 33332 147899999987532 23333211100 123556788887765421110 00 1247899999999
Q ss_pred hhhhhhcccC
Q 011431 369 PSLNLSSCNS 378 (486)
Q Consensus 369 es~~LF~~~a 378 (486)
+.+++|...+
T Consensus 201 ~~~~il~~~~ 210 (386)
T 2qby_A 201 ELEDILTKRA 210 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 29
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=97.50 E-value=0.00012 Score=57.63 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=53.9
Q ss_pred ceeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc
Q 011431 382 FKEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC 444 (486)
Q Consensus 382 ~~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~ 444 (486)
.+++.+++. |+|..|. ..+.+.+.+++||.++.+|...++++|.+. +++..+.+.+++.|
T Consensus 21 ~~~~~l~V~Gm~C~~C~--~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~-~~~~~i~~~i~~~G 81 (85)
T 2k2p_A 21 GAGLSFHVEDMTCGHCA--GVIKGAIEKTVPGAAVHADPASRTVVVGGV-SDAAHIAEIITAAG 81 (85)
T ss_dssp -CEEEEECTTCCHHHHH--HHHHHHHHHHSTTCEEEEETTTTEEEEESC-CCHHHHHHHHHHTT
T ss_pred ccEEEEEECCCCCHHHH--HHHHHHHhcCCCeeEEEEECCCCEEEEEec-CCHHHHHHHHHHcC
Confidence 456677775 9999999 999999999999999999999999999997 99999999998876
No 30
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.48 E-value=7.1e-05 Score=74.06 Aligned_cols=142 Identities=8% Similarity=-0.108 Sum_probs=73.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeec--------cHHHHHHHHhhhhccc-------------cc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEG--------EVKKLDQRLLRFLESV-------------DK 286 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~--------~l~~lqk~ll~~L~~~-------------d~ 286 (486)
+++-|+|.. |+|||||++.+.++.. +.++.... ....+...+...|... ..
T Consensus 32 ~~v~i~G~~-G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 103 (350)
T 2qen_A 32 PLTLLLGIR-RVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKF 103 (350)
T ss_dssp SEEEEECCT-TSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGG
T ss_pred CeEEEECCC-cCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecc
Confidence 678899999 9999999999987641 23332221 1222233333222210 00
Q ss_pred -ccc--cccccccccccccccccCcceeeceecccCHH--------HHHHHhcCCCCCCCCCEEEeeCCccccccc----
Q 011431 287 -HVA--SYDRYGSASFEQPRPQTTSAAHPYVEDVIDDA--------YMEDITDDSSPSLNLSRINSTSRFEQLWPE---- 351 (486)
Q Consensus 287 -~~~--~~~~~g~~s~l~~~L~~tKr~LlVLDDVw~~~--------~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~---- 351 (486)
... ..........+.+.+...++.+||+||++... .+..++...++...+.++|+|++...++..
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~ 183 (350)
T 2qen_A 104 LTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKI 183 (350)
T ss_dssp GTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCT
T ss_pred eeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhh
Confidence 000 00000011112222222137999999997632 222222111112247889999887543211
Q ss_pred ---c--ccC-CCceEecCCCCCchhhhhhccc
Q 011431 352 ---T--ISA-TDTCTEDVTVDNSPSLNLSSCN 377 (486)
Q Consensus 352 ---~--~~~-~~~~y~v~~L~~~es~~LF~~~ 377 (486)
. ..+ ....+++.+|+.+|+.+++...
T Consensus 184 ~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 184 TDYESPLYGRIAGEVLVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp TCTTSTTTTCCCEEEECCCCCHHHHHHHHHHH
T ss_pred cCCCCccccCccceeeCCCCCHHHHHHHHHHH
Confidence 0 011 1246899999999999998753
No 31
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=97.38 E-value=0.00043 Score=51.18 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=52.2
Q ss_pred ceeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc
Q 011431 382 FKEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC 444 (486)
Q Consensus 382 ~~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~ 444 (486)
+++..+++. |+|..|. ..+.+.+.+.+||.++.+|...++++|..+ .+++..+...+++.|
T Consensus 4 ~~~~~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 67 (71)
T 2l3m_A 4 MEQLTLQVEGMSCGHCV--NAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQG 67 (71)
T ss_dssp EEEEEEEEECCCSHHHH--HHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTT
T ss_pred cEEEEEEECCccCHHHH--HHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 355667775 9999999 999999999999999999999999999854 267888888888776
No 32
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=97.37 E-value=0.00064 Score=50.07 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=50.4
Q ss_pred eeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee-ccCHHHHHHHhhccc
Q 011431 383 KEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD-NFDVLSAGTKLNGLC 444 (486)
Q Consensus 383 ~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~-~~d~~~~~~~l~k~~ 444 (486)
+++.+++. |+|..|. ..+.+.+.+.+||.++.+|...++++|..+ .+++..+...+++.|
T Consensus 3 ~~~~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G 64 (71)
T 2xmw_A 3 QTINLQLEGMRCAACA--SSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAG 64 (71)
T ss_dssp EEEEEEEECCCSHHHH--HHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHT
T ss_pred cEEEEEECCcccHHHH--HHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcC
Confidence 44566675 9999999 999999999999999999999999999865 267788888888877
No 33
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=97.36 E-value=0.00076 Score=49.88 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=52.9
Q ss_pred eeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc-cee
Q 011431 383 KEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC-RTE 447 (486)
Q Consensus 383 ~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~-~~~ 447 (486)
+++.+++. |+|..|. ..+.+.+.+.+||.++.+|...++++|..+ .+++..+...+.+.| .+.
T Consensus 3 ~~~~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 69 (72)
T 1osd_A 3 QTVTLSVPGMTCSACP--ITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSS 69 (72)
T ss_dssp EEEEEECTTCCSTTHH--HHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCE
T ss_pred eEEEEEECCeEcHHHH--HHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeE
Confidence 34566674 9999999 999999999999999999999999999876 267788888888877 443
No 34
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=97.35 E-value=0.0007 Score=52.43 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=55.1
Q ss_pred CCcceeeeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhcccc
Q 011431 379 SSTFKEAIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLCR 445 (486)
Q Consensus 379 ~~k~~~~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~~ 445 (486)
+...+++.+++ .|+|..|. ..+.+.+.+++||.++.+|...++++|..+ .+++..+...+++.|.
T Consensus 5 ~~~~~~~~~~v~gm~C~~C~--~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 72 (84)
T 1q8l_A 5 QAGEVVLKMKVEGMTCHSCT--STIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGF 72 (84)
T ss_dssp SSSCEEEEEEECCTTTCSSC--HHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred ccCceEEEEEECCcccHHHH--HHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 34445667777 49999999 999999999999999999999999999875 2678888998988883
No 35
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=97.29 E-value=0.0007 Score=50.08 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=53.1
Q ss_pred eeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee-ccCHHHHHHHhhccc-ceeEE
Q 011431 385 AIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD-NFDVLSAGTKLNGLC-RTELV 449 (486)
Q Consensus 385 ~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~-~~d~~~~~~~l~k~~-~~~~~ 449 (486)
+.+++. |+|..|. ..+.+.+.+.+||.++.++...++++|..+ .+++..+...+++.| .+.++
T Consensus 4 ~~~~v~gm~C~~c~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~ 69 (72)
T 1fvq_A 4 VILAVHGMTCSACT--NTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEIL 69 (72)
T ss_dssp EEEEECSCCSHHHH--HHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEE
T ss_pred EEEEECCeecHHHH--HHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEc
Confidence 456664 9999999 999999999999999999999999999854 267888899898877 56554
No 36
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.16 E-value=0.00055 Score=68.59 Aligned_cols=151 Identities=5% Similarity=-0.169 Sum_probs=78.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhccccc----cceEEEEeee--ccHHHHHHHHhhhhcccccccccccccccccc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLMDNYE----NSDVTLAKFE--GEVKKLDQRLLRFLESVDKHVASYDRYGSASF 299 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~----~~~~~~v~~~--~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~ 299 (486)
..+.+-|+|.. |.||||||+.+.+.....+. ...+..+... .....+...++..+.......+. ........
T Consensus 43 ~~~~vll~G~~-G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~ 120 (387)
T 2v1u_A 43 KPSNALLYGLT-GTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGL-SVGEVYER 120 (387)
T ss_dssp CCCCEEECBCT-TSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCC-CHHHHHHH
T ss_pred CCCcEEEECCC-CCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCC-CHHHHHHH
Confidence 45577799999 99999999999987643221 1112222211 22333455555555321100000 00000122
Q ss_pred ccccccc-CcceeeceecccCHHH-------HHHHhcCCCCC--CCCCEEEeeCCcccccc----ccccC-CCceEecCC
Q 011431 300 EQPRPQT-TSAAHPYVEDVIDDAY-------MEDITDDSSPS--LNLSRINSTSRFEQLWP----ETISA-TDTCTEDVT 364 (486)
Q Consensus 300 l~~~L~~-tKr~LlVLDDVw~~~~-------~~~l~~~~~~~--~~GSrIIiTTR~~~V~~----~~~~~-~~~~y~v~~ 364 (486)
+...+.. .+..+|++|++..... +..+....... ..+..+|.||+...... ..... ....+++++
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~ 200 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPP 200 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCC
T ss_pred HHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCC
Confidence 2223322 1578999999985431 22222211011 34668888887763311 00001 124789999
Q ss_pred CCCchhhhhhcccC
Q 011431 365 VDNSPSLNLSSCNS 378 (486)
Q Consensus 365 L~~~es~~LF~~~a 378 (486)
|+.++..++|...+
T Consensus 201 l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 201 YTAPQLRDILETRA 214 (387)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998764
No 37
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=97.15 E-value=0.0013 Score=47.64 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=48.4
Q ss_pred eeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee-ccCHHHHHHHhhccc
Q 011431 386 IFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD-NFDVLSAGTKLNGLC 444 (486)
Q Consensus 386 v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~-~~d~~~~~~~l~k~~ 444 (486)
.+++. |+|..|. ..+.+.+.+.+||.++.+|...++++|..+ ..++..+.+.+++.|
T Consensus 4 ~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G 62 (66)
T 1yg0_A 4 TFQVPSITCNHCV--DKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAG 62 (66)
T ss_dssp EECCTTCSCSHHH--HHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHT
T ss_pred EEEECCcccHHHH--HHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcC
Confidence 45564 9999999 999999999999999999999999999875 247777888787765
No 38
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=97.15 E-value=0.002 Score=48.15 Aligned_cols=63 Identities=8% Similarity=0.112 Sum_probs=52.7
Q ss_pred eeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc-ceeEEe
Q 011431 386 IFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC-RTELVS 450 (486)
Q Consensus 386 v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~-~~~~~~ 450 (486)
.+++ .|+|..|. ..+.+.+.+.+||.++.+|...++++|..+ .+++..+...+.+.| .+.+..
T Consensus 5 ~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (75)
T 3cjk_B 5 TISVEGMTCNSCV--WTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 71 (75)
T ss_dssp EEEECCCCSHHHH--HHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCccCHHHH--HHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeec
Confidence 4455 59999999 999999999999999999999999999875 267788888898888 555543
No 39
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=97.15 E-value=0.00085 Score=49.60 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=51.8
Q ss_pred eeeeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeec--cCHHHHHHHhhccc
Q 011431 383 KEAIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDN--FDVLSAGTKLNGLC 444 (486)
Q Consensus 383 ~~~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~--~d~~~~~~~l~k~~ 444 (486)
++..+++ .|+|..|. ..+.+.+.+.+||.++.+|...++++|..+. +++..+...+++.|
T Consensus 3 ~~~~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 65 (72)
T 1aw0_A 3 QETVINIDGMTCNSCV--QSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMG 65 (72)
T ss_dssp EEEEEEEECCCHHHHH--HHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred eEEEEEECCeecHHHH--HHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCC
Confidence 3456677 59999999 9999999999999999999999999998762 57788888888877
No 40
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=97.13 E-value=0.0013 Score=49.69 Aligned_cols=66 Identities=9% Similarity=-0.008 Sum_probs=54.9
Q ss_pred ceeeeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc-ceeEE
Q 011431 382 FKEAIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC-RTELV 449 (486)
Q Consensus 382 ~~~~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~-~~~~~ 449 (486)
++++.+++ .|+|..|. ..+.+.+.+++||.++.++...++++|..+ .+++..+...+.+.| .+.++
T Consensus 2 m~~~~~~v~gm~C~~C~--~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 71 (77)
T 1y3j_A 2 SSKCYIQVTGMTCASCV--ANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVI 71 (77)
T ss_dssp CEEEEEEESCGGGCSHH--HHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEE
T ss_pred CEEEEEEECCeeCHHHH--HHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEEC
Confidence 45666777 49999999 999999999999999999999999999865 267788888888877 45443
No 41
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=97.07 E-value=0.0017 Score=48.34 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=49.8
Q ss_pred eeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhcccc
Q 011431 383 KEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLCR 445 (486)
Q Consensus 383 ~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~~ 445 (486)
+++.+++. |+|..|. ..+.+.+.+.+||.++.+|...++++|..+.-.+..+...+.+.|+
T Consensus 3 ~~~~~~v~gm~C~~C~--~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy 64 (73)
T 1mwy_A 3 TRYSWKVSGMDCAACA--RKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGY 64 (73)
T ss_dssp EEEEEEEESCCSTTHH--HHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTC
T ss_pred eEEEEEECCcCCHHHH--HHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCC
Confidence 44566665 9999999 9999999999999999999999999998773235557777777773
No 42
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=97.06 E-value=0.0018 Score=47.14 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=49.4
Q ss_pred cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc-ceeE
Q 011431 390 EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC-RTEL 448 (486)
Q Consensus 390 ~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~-~~~~ 448 (486)
.|+|..|. ..+.+.+.+.+||.++.+|...++++|..+ .+++..+...+++.| .+++
T Consensus 8 gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 67 (68)
T 1cpz_A 8 GMSCNHCV--ARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67 (68)
T ss_dssp CCCSSSHH--HHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred CeeCHHHH--HHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence 49999999 999999999999999999999999999875 267888888888877 4443
No 43
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.05 E-value=0.0003 Score=69.58 Aligned_cols=69 Identities=4% Similarity=-0.091 Sum_probs=42.6
Q ss_pred ceeeceecccCHH-----HHHHHhcCCCCCCCCCEEEeeCCcccccccc--------cc-C-CCceEecCCCCCchhhhh
Q 011431 309 AAHPYVEDVIDDA-----YMEDITDDSSPSLNLSRINSTSRFEQLWPET--------IS-A-TDTCTEDVTVDNSPSLNL 373 (486)
Q Consensus 309 r~LlVLDDVw~~~-----~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~--------~~-~-~~~~y~v~~L~~~es~~L 373 (486)
+++|++||+.... .+..++...++...+.++|+|+|....+... .. + ....+++.+|+.+|+.++
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 7899999997532 2222221111112467999999976532110 01 1 125789999999999999
Q ss_pred hccc
Q 011431 374 SSCN 377 (486)
Q Consensus 374 F~~~ 377 (486)
+...
T Consensus 218 l~~~ 221 (357)
T 2fna_A 218 LRRG 221 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9764
No 44
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=97.05 E-value=0.0013 Score=51.87 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=50.2
Q ss_pred eeeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhcc
Q 011431 384 EAIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGL 443 (486)
Q Consensus 384 ~~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~ 443 (486)
++.+++ .|+|..|. ..+.+.+.+++||.++.++...++++|..+ .+++..+...+.+.
T Consensus 4 ~~~l~v~Gm~C~~C~--~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 4 TATFIIDGMHCKSCV--SNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEESCCHHHHH--HHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHH--HHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 344555 49999999 999999999999999999999999999864 26788899999988
No 45
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=96.99 E-value=0.002 Score=46.54 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=49.7
Q ss_pred eeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc
Q 011431 384 EAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC 444 (486)
Q Consensus 384 ~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~ 444 (486)
+..+++. |+|..|. ..+.+.+...+||.++.++...++++|..+ .+++..+...+.+.|
T Consensus 3 ~~~~~v~gm~C~~c~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 64 (69)
T 2qif_A 3 QKTLQVEGMSCQHCV--KAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQG 64 (69)
T ss_dssp EEEEEEECCCSHHHH--HHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred EEEEEECCcccHHHH--HHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 3455665 9999999 999999999999999999999999999864 267778888888766
No 46
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.98 E-value=0.00087 Score=65.44 Aligned_cols=145 Identities=6% Similarity=-0.025 Sum_probs=75.9
Q ss_pred HHHHHHhhcCCCceeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeee--ccHHHHHHHHhhhhccccccccccc
Q 011431 215 DEVLSLLRNAEGYRSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFE--GEVKKLDQRLLRFLESVDKHVASYD 292 (486)
Q Consensus 215 ~~v~~ll~~~~~~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~--~~l~~lqk~ll~~L~~~d~~~~~~~ 292 (486)
+.+...+... ....+-++|.. |.||||+|+.+.+.+........+...... .....++ .++..+..
T Consensus 31 ~~l~~~l~~~-~~~~~ll~G~~-G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~--------- 98 (323)
T 1sxj_B 31 DRLQQIAKDG-NMPHMIISGMP-GIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVR-NQIKHFAQ--------- 98 (323)
T ss_dssp HHHHHHHHSC-CCCCEEEECST-TSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHH-THHHHHHH---------
T ss_pred HHHHHHHHcC-CCCeEEEECcC-CCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHH-HHHHHHHh---------
Confidence 3444444432 23337799999 999999999998876332111111221111 1121111 11111100
Q ss_pred cccccccccccc-ccCcceeeceecccC--HHHHHHHhcCCCCCCCCCEEEeeCCccccccccccCCCceEecCCCCCch
Q 011431 293 RYGSASFEQPRP-QTTSAAHPYVEDVID--DAYMEDITDDSSPSLNLSRINSTSRFEQLWPETISATDTCTEDVTVDNSP 369 (486)
Q Consensus 293 ~~g~~s~l~~~L-~~tKr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~~~~~y~v~~L~~~e 369 (486)
....+ .+ ++.+|++||++. ......+....-+...++++|+||+...-+..........+++.+++.++
T Consensus 99 -------~~~~~~~~-~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~ 170 (323)
T 1sxj_B 99 -------KKLHLPPG-KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDED 170 (323)
T ss_dssp -------BCCCCCTT-CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHH
T ss_pred -------ccccCCCC-CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHH
Confidence 00012 22 578999999975 33344333211012346788888876443211111122478999999999
Q ss_pred hhhhhcccCC
Q 011431 370 SLNLSSCNSS 379 (486)
Q Consensus 370 s~~LF~~~a~ 379 (486)
..+++...+.
T Consensus 171 ~~~~l~~~~~ 180 (323)
T 1sxj_B 171 VLKRLLQIIK 180 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 47
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=96.91 E-value=0.002 Score=48.80 Aligned_cols=64 Identities=8% Similarity=0.121 Sum_probs=53.5
Q ss_pred eeeeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc-ceeE
Q 011431 383 KEAIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC-RTEL 448 (486)
Q Consensus 383 ~~~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~-~~~~ 448 (486)
+++.+++ .|+|..|. ..+.+.+.+.+||.++.++...++++|..+ .+++..+...+++.| .+.+
T Consensus 8 ~~~~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 75 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCV--WTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVI 75 (79)
T ss_dssp EEEEEEECCCCSTTTH--HHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEE
T ss_pred EEEEEEECCccCHHHH--HHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEe
Confidence 4556666 49999999 999999999999999999999999999865 257788888888877 4544
No 48
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=96.84 E-value=0.0024 Score=47.47 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=49.0
Q ss_pred eeeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeec--cCHHHHHHHhhccc
Q 011431 384 EAIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDN--FDVLSAGTKLNGLC 444 (486)
Q Consensus 384 ~~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~--~d~~~~~~~l~k~~ 444 (486)
++.+++ .|+|..|. ..+.+.+.+++||.++.+|...++++|..+. +++..+...+.+.|
T Consensus 5 ~~~~~v~gm~C~~c~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 66 (75)
T 1yjr_A 5 VLELVVRGMTCASCV--HKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLG 66 (75)
T ss_dssp CEEEEEETCCTTTHH--HHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHH--HHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 344555 59999999 9999999999999999999999999998762 45667778787777
No 49
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=96.81 E-value=0.0026 Score=47.26 Aligned_cols=62 Identities=13% Similarity=0.150 Sum_probs=51.8
Q ss_pred ceeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhcccc
Q 011431 382 FKEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLCR 445 (486)
Q Consensus 382 ~~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~~ 445 (486)
+++..+++. |+|..|. ..+.+.+.+.+||.++.+|...++++|.-+ .+++..+...+.+.|.
T Consensus 5 ~~~~~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 69 (76)
T 1opz_A 5 QKEIAMQVSGMTCAACA--ARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGY 69 (76)
T ss_dssp CEEEEEEEESCCSTTHH--HHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTC
T ss_pred ceEEEEEECCcccHHHH--HHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 345567775 9999999 999999999999999999999999999753 2677888888888773
No 50
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=96.79 E-value=0.0027 Score=46.46 Aligned_cols=54 Identities=7% Similarity=0.021 Sum_probs=47.9
Q ss_pred cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee-ccCHHHHHHHhhcccc
Q 011431 390 EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD-NFDVLSAGTKLNGLCR 445 (486)
Q Consensus 390 ~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~-~~d~~~~~~~l~k~~~ 445 (486)
.|+|..|. ..+.+.+.+.+||.++.+|...++++|..+ ..++..+...+++.|+
T Consensus 8 gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy 62 (69)
T 2kt2_A 8 GMTCDSCA--AHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGY 62 (69)
T ss_dssp SSCSTHHH--HHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTS
T ss_pred CcccHHHH--HHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCC
Confidence 59999999 999999999999999999999999999865 2577889999988873
No 51
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=96.77 E-value=0.0046 Score=50.83 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=53.4
Q ss_pred ceeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeec--cCHHHHHHHhhccc
Q 011431 382 FKEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDN--FDVLSAGTKLNGLC 444 (486)
Q Consensus 382 ~~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~--~d~~~~~~~l~k~~ 444 (486)
++++.++|. |+|..|. .++.+.+..++||.++.++...++++|..+. +++..+...+++.|
T Consensus 7 ~~~~~l~v~Gm~C~~Ca--~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~G 70 (111)
T 2ofg_X 7 LKTQQMQVGGMDCTSCK--LKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 70 (111)
T ss_dssp CEEEEEEESCCCGGGTH--HHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTT
T ss_pred ceEEEEEECCcCCHHHH--HHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 456778886 9999999 9999999999999999999999999998762 57788888898877
No 52
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=96.74 E-value=0.0047 Score=44.97 Aligned_cols=59 Identities=10% Similarity=0.184 Sum_probs=49.8
Q ss_pred eeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc
Q 011431 384 EAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC 444 (486)
Q Consensus 384 ~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~ 444 (486)
+..+++. |+|..|. .++.+.+.+.+||.++.+|...++++|..+ .+++..+...+.+.|
T Consensus 4 ~~~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 65 (71)
T 2ldi_A 4 TQQMQVGGMRCAACA--SSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALG 65 (71)
T ss_dssp EEEEEEETCTTSGGG--HHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTT
T ss_pred EEEEEECCccCHHHH--HHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 3445664 9999999 999999999999999999999999999865 267777888888777
No 53
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=96.74 E-value=0.0069 Score=47.93 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=54.7
Q ss_pred cceeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeec--cCHHHHHHHhhccc-ceeE
Q 011431 381 TFKEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDN--FDVLSAGTKLNGLC-RTEL 448 (486)
Q Consensus 381 k~~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~--~d~~~~~~~l~k~~-~~~~ 448 (486)
.+.+..+.+. |+|..|. ..+.+.+..++||.++.++...++++|..+. +++..+...+...| .+.+
T Consensus 14 ~~~~~~~~v~gm~C~~C~--~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 83 (95)
T 2kkh_A 14 KLQKSYFDVLGICCTSEV--PIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANV 83 (95)
T ss_dssp CSEEEEEEETTCCTTTTH--HHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEE
T ss_pred ceEEEEEEECCcCCHHHH--HHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEE
Confidence 3455667774 9999999 9999999999999999999999999998762 57788888888877 4444
No 54
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.65 E-value=0.0009 Score=69.17 Aligned_cols=136 Identities=10% Similarity=-0.037 Sum_probs=74.0
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHHHHHHHhhhhccccccccccccccccccccccccc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKKLDQRLLRFLESVDKHVASYDRYGSASFEQPRPQT 306 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~l~~~L~~ 306 (486)
..-+-|+|.. |.||||||+.+.+.+...+....+..+... .+...+...+... .. ..+...+..
T Consensus 130 ~~~lll~Gp~-G~GKTtLa~aia~~l~~~~~~~~v~~v~~~----~~~~~~~~~~~~~----------~~-~~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGV-GLGKTHLLQSIGNYVVQNEPDLRVMYITSE----KFLNDLVDSMKEG----------KL-NEFREKYRK 193 (440)
T ss_dssp SCCEEEECSS-SSSHHHHHHHHHHHHHHHCCSSCEEEEEHH----HHHHHHHHHHHTT----------CH-HHHHHHHTT
T ss_pred CCeEEEECCC-CCCHHHHHHHHHHHHHHhCCCCeEEEeeHH----HHHHHHHHHHHcc----------cH-HHHHHHhcC
Confidence 5567799999 999999999999877555433223333221 1223333332210 00 111122222
Q ss_pred CcceeeceecccCHH----HHHHHhcCC-CCCCCCCEEEeeCCcc-c----cccc--cccCCCceEecCCCCCchhhhhh
Q 011431 307 TSAAHPYVEDVIDDA----YMEDITDDS-SPSLNLSRINSTSRFE-Q----LWPE--TISATDTCTEDVTVDNSPSLNLS 374 (486)
Q Consensus 307 tKr~LlVLDDVw~~~----~~~~l~~~~-~~~~~GSrIIiTTR~~-~----V~~~--~~~~~~~~y~v~~L~~~es~~LF 374 (486)
+..+|++||+.... ..+.+.... .....|..||+||.+. . +... .......++++++++.++-..++
T Consensus 194 -~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 194 -KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp -TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred -CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 35689999986321 222222110 0023478899988762 1 1100 00112357889999999999998
Q ss_pred cccCC
Q 011431 375 SCNSS 379 (486)
Q Consensus 375 ~~~a~ 379 (486)
...+.
T Consensus 273 ~~~~~ 277 (440)
T 2z4s_A 273 RKMLE 277 (440)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87663
No 55
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=96.64 E-value=0.0023 Score=46.88 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=47.7
Q ss_pred eeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc
Q 011431 385 AIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC 444 (486)
Q Consensus 385 ~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~ 444 (486)
..+++ .|+|..|. ..+.+.+.++ ||.++.+|...++++|.++ .+ ..+...+++.|
T Consensus 3 ~~~~v~gm~C~~C~--~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~-~~-~~i~~~i~~~G 58 (67)
T 2kyz_A 3 YVLYVPDISCNHCK--MRISKALEEL-GVKNYEVSVEEKKVVVETE-NL-DSVLKKLEEID 58 (67)
T ss_dssp EEEECGGGGSHHHH--HHHHHHHHHH-TCSEEEEETTTTEEEEECS-CH-HHHHHHHHTTT
T ss_pred EEEEECCcCcHHHH--HHHHHHHHHc-CCeEEEEECCCCEEEEEEC-CH-HHHHHHHHHcC
Confidence 34566 59999999 9999999999 9999999999999999987 44 77888888877
No 56
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=96.63 E-value=0.0038 Score=53.72 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=55.1
Q ss_pred eeeeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc-ceeEE
Q 011431 383 KEAIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC-RTELV 449 (486)
Q Consensus 383 ~~~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~-~~~~~ 449 (486)
+.+.+.+ .|+|..|. .++.+.+.+++||.++.++...++++|.-+ .+++..+.+.+++.| .+.+.
T Consensus 74 ~~~~~~v~gm~C~~C~--~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 142 (151)
T 1p6t_A 74 EKAEFDIEGMTCAACA--NRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLK 142 (151)
T ss_dssp EEEEEEESSCCSSSHH--HHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEES
T ss_pred cccEEEecCCCCHHHH--HHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEc
Confidence 3456677 49999999 999999999999999999999999999843 278899999999988 55553
No 57
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=96.61 E-value=0.0012 Score=54.50 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=49.7
Q ss_pred eecCceEEecccCccCcChHHHHHHHHhcCCCeEEEeCCcCCCCCchHHHHHHHhhccceEEEeecccccChhhHHHHHH
Q 011431 19 RYKHDVFVTFSGEDIRENFGSYLFAALFRESVKTFRDEQIRRGDEIMPALLQAIEESKISLVIFSKRFAFSRWCLEELVK 98 (486)
Q Consensus 19 ~y~~dVFis~~~~D~~~~f~~~L~~~L~~~gi~~~~d~~~~~g~~i~~~i~~~I~~s~~~ivv~S~~y~~S~wcl~El~~ 98 (486)
+| .+||||..+|. ...|...|.+.|+..- | ..|+.|.+.|++.+++..+|+||..|+..
T Consensus 4 ~~--~lFISh~~~d~----~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 4 EI--RLYITEGEVED----YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CE--EEEECCCCSHH----HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred eE--EEEEecccHhH----HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 58 99999999982 3344444444454322 2 45789999999999999999999999865
Q ss_pred HHHHhcCCCEEEEEE
Q 011431 99 IIECNKLYQTVIPVF 113 (486)
Q Consensus 99 i~~~~~~~~~v~Pif 113 (486)
+.+ .+..++-|.
T Consensus 63 A~~---~gkpIigV~ 74 (111)
T 1eiw_A 63 ARK---SSKPIITVR 74 (111)
T ss_dssp HTT---TTCCEEEEC
T ss_pred HHH---cCCCEEEEE
Confidence 554 444455443
No 58
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=96.60 E-value=0.004 Score=46.03 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=45.3
Q ss_pred eeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeeccCHHHHHHHhhccc
Q 011431 383 KEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDNFDVLSAGTKLNGLC 444 (486)
Q Consensus 383 ~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~~d~~~~~~~l~k~~ 444 (486)
++..+++. |+|..|. ..+.+.+.+.+||.++.+|...++++|.++ .+ ...+++.|
T Consensus 3 ~~~~~~v~gm~C~~C~--~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~-~~----~~~i~~~G 58 (71)
T 2aj0_A 3 EKTVYRVDGLSCTNCA--AKFERNVKEIEGVTEAIVNFGASKITVTGE-AS----IQQVEQAG 58 (71)
T ss_dssp CEEEEEEESCCCHHHH--HHHHHHHHHSTTEEEEEECCSSEEEEEEES-CC----HHHHHHHH
T ss_pred eEEEEEECCcccHHHH--HHHHHHHHcCCCeEEEEEECCCCEEEEEec-Cc----HHHHHHhC
Confidence 34566675 9999999 999999999999999999999999999987 54 33455555
No 59
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.0024 Score=62.37 Aligned_cols=131 Identities=5% Similarity=-0.093 Sum_probs=69.4
Q ss_pred eeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeecc--HHHHHHHHhhhhcccccccccccccccccccccccc-
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGE--VKKLDQRLLRFLESVDKHVASYDRYGSASFEQPRPQ- 305 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~--l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~l~~~L~- 305 (486)
.+-++|.. |.||||+|+.+.+.+........+........ ...++..+. .... . . .+.
T Consensus 48 ~~ll~G~~-G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~-~-------~~~~ 108 (327)
T 1iqp_A 48 HLLFAGPP-GVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVK-EFAR---------T-K-------PIGG 108 (327)
T ss_dssp EEEEESCT-TSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHH-HHHH---------S-C-------CGGG
T ss_pred eEEEECcC-CCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHH-HHHh---------h-C-------CcCC
Confidence 36799999 99999999999887633211111222211111 110111110 0000 0 0 111
Q ss_pred cCcceeeceecccC--HHHHHHHhcCCCCCCCCCEEEeeCCccccccccccCCCceEecCCCCCchhhhhhcccCC
Q 011431 306 TTSAAHPYVEDVID--DAYMEDITDDSSPSLNLSRINSTSRFEQLWPETISATDTCTEDVTVDNSPSLNLSSCNSS 379 (486)
Q Consensus 306 ~tKr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a~ 379 (486)
. ++.+|++|+++. ......+....-+...++++|+||...+-+..........+++.+|+.++...++...+.
T Consensus 109 ~-~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 109 A-SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp C-SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred C-CCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence 2 577899999975 333444432110123467888888765422111000123689999999999998876543
No 60
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.50 E-value=0.0024 Score=64.02 Aligned_cols=149 Identities=4% Similarity=-0.144 Sum_probs=78.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeee--ccHHHHHHHHhhhhcccccccccccccccccccccccc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFE--GEVKKLDQRLLRFLESVDKHVASYDRYGSASFEQPRPQ 305 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~--~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~l~~~L~ 305 (486)
+.+.|+|.. |.|||||++.+.+........ .+..+... .....+...++..+.......+ .........+...+.
T Consensus 45 ~~~li~G~~-G~GKTtl~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 45 PRATLLGRP-GTGKTVTLRKLWELYKDKTTA-RFVYINGFIYRNFTAIIGEIARSLNIPFPRRG-LSRDEFLALLVEHLR 121 (389)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHHHTTSCCC-EEEEEETTTCCSHHHHHHHHHHHTTCCCCSSC-CCHHHHHHHHHHHHH
T ss_pred CeEEEECCC-CCCHHHHHHHHHHHHhhhcCe-eEEEEeCccCCCHHHHHHHHHHHhCccCCCCC-CCHHHHHHHHHHHHh
Confidence 478899999 999999999998876443211 12222211 2233344555554432100000 000001112222222
Q ss_pred c-CcceeeceecccC--HHHHHHHhcCCCC-CC---CCCEEEeeCCccccccccc-----cCCCceEecCCCCCchhhhh
Q 011431 306 T-TSAAHPYVEDVID--DAYMEDITDDSSP-SL---NLSRINSTSRFEQLWPETI-----SATDTCTEDVTVDNSPSLNL 373 (486)
Q Consensus 306 ~-tKr~LlVLDDVw~--~~~~~~l~~~~~~-~~---~GSrIIiTTR~~~V~~~~~-----~~~~~~y~v~~L~~~es~~L 373 (486)
. .+..+|++|+++. ......+...... .. .+..||+||++.++..... ......+++++|+.++..++
T Consensus 122 ~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~ 201 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDI 201 (389)
T ss_dssp HTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHH
T ss_pred hcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHH
Confidence 1 1468999999875 3444444421111 11 3667888887764321100 00123689999999999999
Q ss_pred hcccCC
Q 011431 374 SSCNSS 379 (486)
Q Consensus 374 F~~~a~ 379 (486)
+...+.
T Consensus 202 l~~~~~ 207 (389)
T 1fnn_A 202 LLDRAK 207 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877643
No 61
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=96.42 E-value=0.0068 Score=45.62 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=51.9
Q ss_pred eeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc-ceeE
Q 011431 384 EAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC-RTEL 448 (486)
Q Consensus 384 ~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~-~~~~ 448 (486)
+..+++. |+|..|. ..+.+.+.+.+||.++.++...++++|..+ .+++..+...+.+.| .+.+
T Consensus 4 ~~~~~v~gm~C~~C~--~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (80)
T 1jww_A 4 KAEFDIEGMTCAACA--NRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKL 70 (80)
T ss_dssp EEEEEEESCCCHHHH--HHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEE
T ss_pred EEEEEECCccCHHHH--HHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEe
Confidence 4456665 9999999 999999999999999999999999999754 267788888888877 4444
No 62
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=96.09 E-value=0.0083 Score=51.27 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=52.0
Q ss_pred eeeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEeec--cCHHHHHHHhhcccc
Q 011431 384 EAIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGDN--FDVLSAGTKLNGLCR 445 (486)
Q Consensus 384 ~~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~~--~d~~~~~~~l~k~~~ 445 (486)
.+.+++ .|+|..|. ..+.+.+.+++||.++.++...++++|..+. +++..+.+.+.+.|+
T Consensus 81 ~~~~~v~gm~C~~C~--~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy 143 (149)
T 2ew9_A 81 NIELTITGMTCASCV--HNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGF 143 (149)
T ss_dssp EEEEEEESCCSHHHH--HHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTC
T ss_pred eeEEEEEeccCHHHH--HHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCC
Confidence 455666 59999999 9999999999999999999999999998762 678889998988773
No 63
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=95.97 E-value=0.019 Score=52.20 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=55.7
Q ss_pred eeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc-ceeEEe
Q 011431 383 KEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC-RTELVS 450 (486)
Q Consensus 383 ~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~-~~~~~~ 450 (486)
+++.++|. |+|..|. ..+.+.+.+++||.++.++...++++|..+ .+++..+...+++.| .+.++.
T Consensus 122 ~~~~l~v~Gm~C~~C~--~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 191 (202)
T 2rop_A 122 STTLIAIAGMTCASCV--HSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVS 191 (202)
T ss_dssp EEEEEEESCCCSTHHH--HHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC-
T ss_pred eEEEEEECCccCHHHH--HHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcC
Confidence 45677785 9999999 999999999999999999999999999864 268888999999888 565544
No 64
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.94 E-value=0.021 Score=50.70 Aligned_cols=107 Identities=22% Similarity=0.219 Sum_probs=72.9
Q ss_pred eecCceEEec--------------ccCccCcChHHHHHHHHhcCCCeEEEeC-CcC-------C-CCCchHHHHHHHhhc
Q 011431 19 RYKHDVFVTF--------------SGEDIRENFGSYLFAALFRESVKTFRDE-QIR-------R-GDEIMPALLQAIEES 75 (486)
Q Consensus 19 ~y~~dVFis~--------------~~~D~~~~f~~~L~~~L~~~gi~~~~d~-~~~-------~-g~~i~~~i~~~I~~s 75 (486)
.|++-+|++| ..+|. .+...|..--.+..+..|.|- ++. . -..|.+.|.+.|..|
T Consensus 3 ayrn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~S 80 (189)
T 3hyn_A 3 SYQNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNS 80 (189)
T ss_dssp -CCCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTE
T ss_pred ccccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhc
Confidence 3566788999 34453 345555555555566667775 442 2 345888999999999
Q ss_pred cceEEEeecccccChhhHHHHHHHHHHhcCCCEEEEEEeeec-CCccccccCchH
Q 011431 76 KISLVIFSKRFAFSRWCLEELVKIIECNKLYQTVIPVFYKVL-PSDVRNQLGSFG 129 (486)
Q Consensus 76 ~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~v~Pify~v~-~s~vr~q~g~f~ 129 (486)
+..|+++|++...|.|-..|+..++. +.+..||-|+-+-+ .+++..-.|.|.
T Consensus 81 k~vIllIs~~T~~s~~v~wEIe~Ai~--~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 81 KNIILFLSSITANSRALREEMNYGIG--TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp EEEEEECCTTCCCCHHHHHHHHHHTT--TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred CcEEEEEecCccccchhHHHHHHHHH--hcCCcEEEEECCccccchhhhccccch
Confidence 99999999999999999999887772 35667777765422 334554445543
No 65
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=95.14 E-value=0.042 Score=46.70 Aligned_cols=65 Identities=8% Similarity=0.077 Sum_probs=54.1
Q ss_pred ceeeeeec-cccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc-ceeE
Q 011431 382 FKEAIFKL-EIHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC-RTEL 448 (486)
Q Consensus 382 ~~~~v~kv-~~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~-~~~~ 448 (486)
++++.+.+ .|+|.+|. ..+.+.+..++||.++.++...++++|..+ ..++..+...+.+.| .+.+
T Consensus 3 ~~~~~~~v~gm~C~~C~--~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 71 (149)
T 2ew9_A 3 PQKCFLQIKGMTCASCV--SNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAV 71 (149)
T ss_dssp CEEEEEEEECCCSSSHH--HHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEEECCeecHHHH--HHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEe
Confidence 45667777 59999999 999999999999999999999999999764 267778888888877 4444
No 66
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.07 E-value=0.024 Score=54.22 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=31.8
Q ss_pred CCCCEEEeeCCcccccccccc---CCCceEecCCCCCchhhhhhcccCCC
Q 011431 334 LNLSRINSTSRFEQLWPETIS---ATDTCTEDVTVDNSPSLNLSSCNSSS 380 (486)
Q Consensus 334 ~~GSrIIiTTR~~~V~~~~~~---~~~~~y~v~~L~~~es~~LF~~~a~~ 380 (486)
..+..||.||...+.+..... .-+..++++.++.++-.++|..++..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 346788888876655421111 12347899999999999999877653
No 67
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.72 E-value=0.042 Score=54.53 Aligned_cols=71 Identities=8% Similarity=-0.100 Sum_probs=40.9
Q ss_pred cceeeceecccC--HHHHHHHhcCCCCCCCCCEEEeeCCccccccccccCCCceEecCCCCCchhhhhhcccC
Q 011431 308 SAAHPYVEDVID--DAYMEDITDDSSPSLNLSRINSTSRFEQLWPETISATDTCTEDVTVDNSPSLNLSSCNS 378 (486)
Q Consensus 308 Kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 378 (486)
++.+|++||+.. ......++...-+......+|+||.+..-+..........+++.+++.++...++...+
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 567899999864 33444443211012235677777654432111111122578999999999988887554
No 68
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=94.53 E-value=0.074 Score=48.23 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=51.2
Q ss_pred ceeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhcc
Q 011431 382 FKEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGL 443 (486)
Q Consensus 382 ~~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~ 443 (486)
++++.++|. |+|..|. .++.+.+.+++||.++.++...++++|..+ .+++..+...+++.
T Consensus 19 ~~~~~l~v~Gm~C~~C~--~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 81 (202)
T 2rop_A 19 VVTLQLRIDGMHCKSCV--LNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL 81 (202)
T ss_dssp -CEEEEEEESGGGSTHH--HHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred cEEEEEEECCeEcHHHH--HHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 345667775 9999999 999999999999999999999999999865 26778888888876
No 69
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.49 E-value=0.019 Score=56.28 Aligned_cols=132 Identities=11% Similarity=-0.042 Sum_probs=66.8
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHHHHHHHhhhhccccccccccccccccccccccccc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKKLDQRLLRFLESVDKHVASYDRYGSASFEQPRPQT 306 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~l~~~L~~ 306 (486)
...+-|+|.. |.||||||+.+.+..... ...+..+... .+...+...+... .. ..+...+.
T Consensus 37 ~~~lll~G~~-GtGKT~la~~i~~~~~~~--~~~~~~i~~~----~~~~~~~~~~~~~----------~~-~~~~~~~~- 97 (324)
T 1l8q_A 37 YNPIFIYGSV-GTGKTHLLQAAGNEAKKR--GYRVIYSSAD----DFAQAMVEHLKKG----------TI-NEFRNMYK- 97 (324)
T ss_dssp CSSEEEECSS-SSSHHHHHHHHHHHHHHT--TCCEEEEEHH----HHHHHHHHHHHHT----------CH-HHHHHHHH-
T ss_pred CCeEEEECCC-CCcHHHHHHHHHHHHHHC--CCEEEEEEHH----HHHHHHHHHHHcC----------cH-HHHHHHhc-
Confidence 3456689999 999999999999876432 1112222211 1222222222110 00 01111111
Q ss_pred CcceeeceecccCHH----HHHHHhcCC-CCCCCCCEEEeeCCccc-----cccc--cccCCCceEecCCCCCchhhhhh
Q 011431 307 TSAAHPYVEDVIDDA----YMEDITDDS-SPSLNLSRINSTSRFEQ-----LWPE--TISATDTCTEDVTVDNSPSLNLS 374 (486)
Q Consensus 307 tKr~LlVLDDVw~~~----~~~~l~~~~-~~~~~GSrIIiTTR~~~-----V~~~--~~~~~~~~y~v~~L~~~es~~LF 374 (486)
+..+|++||+.... ....+.... .....|.+||+||.+.- +... .......++++++ +.++-..++
T Consensus 98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 34688999986422 112222100 00124678888875331 1100 0011225689999 999999888
Q ss_pred cccCC
Q 011431 375 SCNSS 379 (486)
Q Consensus 375 ~~~a~ 379 (486)
..++.
T Consensus 176 ~~~~~ 180 (324)
T 1l8q_A 176 KEKLK 180 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 70
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.27 E-value=0.053 Score=52.38 Aligned_cols=72 Identities=6% Similarity=-0.100 Sum_probs=42.9
Q ss_pred cceeeceecccC--HHHHHHHhcCCCCCCCCCEEEeeCCccccccccccCCCceEecCCCCCchhhhhhcccCC
Q 011431 308 SAAHPYVEDVID--DAYMEDITDDSSPSLNLSRINSTSRFEQLWPETISATDTCTEDVTVDNSPSLNLSSCNSS 379 (486)
Q Consensus 308 Kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a~ 379 (486)
++.+|++|++.. ......+....-+.....++|+||....-+..........+++.+++.++...++...+.
T Consensus 102 ~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp CCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 578899999874 333444443221223467888877655422111111224789999999998888876543
No 71
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.01 E-value=0.031 Score=53.27 Aligned_cols=26 Identities=4% Similarity=-0.350 Sum_probs=21.3
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..-+-++|.. |.|||+||+++.+...
T Consensus 64 ~~~vLl~G~~-GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 64 LVSVLLEGPP-HSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEEECST-TSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCC-CCcHHHHHHHHHHHhC
Confidence 3455689999 9999999999988753
No 72
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=93.87 E-value=0.11 Score=44.15 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=49.8
Q ss_pred cceeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhccc
Q 011431 381 TFKEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLC 444 (486)
Q Consensus 381 k~~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~ 444 (486)
..++..+.+. |+|..|. ..+.+.+.+++||.++.++...++++|..+ .+++..+...+++.|
T Consensus 4 ~~~~~~~~v~gm~C~~C~--~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 68 (151)
T 1p6t_A 4 EQKEIAMQVSGMTCAACA--ARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLG 68 (151)
T ss_dssp CCEEEEEEEESCCSSHHH--HHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHT
T ss_pred cceEEEEEECCCcCHHHH--HHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcC
Confidence 3445556664 9999999 999999999999999999999999998754 257777777777655
No 73
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.73 E-value=0.023 Score=55.01 Aligned_cols=130 Identities=5% Similarity=-0.102 Sum_probs=67.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhccccc--cceEEEEeeeccHHHHHHHHhhhhcccccccccccccccccccccc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLMDNYE--NSDVTLAKFEGEVKKLDQRLLRFLESVDKHVASYDRYGSASFEQPR 303 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~--~~~~~~v~~~~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~l~~~ 303 (486)
...-+-++|-. |.|||+||+.+.+.+..... ...+..+... . +.. ...+.. ...+...
T Consensus 66 ~~~~vll~G~~-GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~-----------l~~--~~~g~~-----~~~~~~~ 125 (309)
T 3syl_A 66 PTLHMSFTGNP-GTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD-D-----------LVG--QYIGHT-----APKTKEV 125 (309)
T ss_dssp CCCEEEEEECT-TSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG-G-----------TCC--SSTTCH-----HHHHHHH
T ss_pred CCceEEEECCC-CCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH-H-----------hhh--hccccc-----HHHHHHH
Confidence 33446689999 99999999988776533211 1112222110 0 100 000000 0111112
Q ss_pred cccCcceeeceeccc-----------CHHHHHHHhcCCCCCCCCCEEEeeCCcc----------ccccccccCCCceEec
Q 011431 304 PQTTSAAHPYVEDVI-----------DDAYMEDITDDSSPSLNLSRINSTSRFE----------QLWPETISATDTCTED 362 (486)
Q Consensus 304 L~~tKr~LlVLDDVw-----------~~~~~~~l~~~~~~~~~GSrIIiTTR~~----------~V~~~~~~~~~~~y~v 362 (486)
+...+..+|++|++. +......++...-......+||.||... .+..+ .+..+++
T Consensus 126 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R----~~~~i~~ 201 (309)
T 3syl_A 126 LKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR----IAHHIEF 201 (309)
T ss_dssp HHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH----EEEEEEE
T ss_pred HHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh----CCeEEEc
Confidence 211134588899987 3333333332110123456888887542 22211 1357899
Q ss_pred CCCCCchhhhhhcccCC
Q 011431 363 VTVDNSPSLNLSSCNSS 379 (486)
Q Consensus 363 ~~L~~~es~~LF~~~a~ 379 (486)
++++.++-..++..++.
T Consensus 202 ~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 202 PDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999877654
No 74
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.33 E-value=0.11 Score=48.62 Aligned_cols=45 Identities=2% Similarity=-0.134 Sum_probs=28.6
Q ss_pred CCCEEEeeCCcccccccccc---CCCceEecCCCCCchhhhhhcccCC
Q 011431 335 NLSRINSTSRFEQLWPETIS---ATDTCTEDVTVDNSPSLNLSSCNSS 379 (486)
Q Consensus 335 ~GSrIIiTTR~~~V~~~~~~---~~~~~y~v~~L~~~es~~LF~~~a~ 379 (486)
.+..||.||...+.+..... .-+..++++.++.++-.++|..++.
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLK 191 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHH
Confidence 35577777765443221111 1345788999999999999877654
No 75
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.27 E-value=0.3 Score=47.16 Aligned_cols=25 Identities=0% Similarity=-0.219 Sum_probs=21.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
+.+-++|.. |.||||||+++.+...
T Consensus 50 ~~vLL~Gp~-GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 50 KGVLFYGPP-GCGKTLLAKAIANECQ 74 (301)
T ss_dssp SEEEEECSS-SSSHHHHHHHHHHHTT
T ss_pred ceEEEECCC-CcCHHHHHHHHHHHhC
Confidence 456789999 9999999999988764
No 76
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.66 E-value=0.23 Score=48.32 Aligned_cols=118 Identities=5% Similarity=-0.115 Sum_probs=57.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeee-ccHHHHHHHHhhhhccccccccccccccccccccccccc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFE-GEVKKLDQRLLRFLESVDKHVASYDRYGSASFEQPRPQT 306 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~-~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~l~~~L~~ 306 (486)
..+=+.|.. |.||||+|+.+.+.+...| ..+..+ .....++..+...... . ....
T Consensus 49 ~~~L~~G~~-G~GKT~la~~la~~l~~~~-----~~i~~~~~~~~~i~~~~~~~~~~------------~------~~~~ 104 (324)
T 3u61_B 49 HIILHSPSP-GTGKTTVAKALCHDVNADM-----MFVNGSDCKIDFVRGPLTNFASA------------A------SFDG 104 (324)
T ss_dssp SEEEECSST-TSSHHHHHHHHHHHTTEEE-----EEEETTTCCHHHHHTHHHHHHHB------------C------CCSS
T ss_pred eEEEeeCcC-CCCHHHHHHHHHHHhCCCE-----EEEcccccCHHHHHHHHHHHHhh------------c------ccCC
Confidence 344455656 9999999999988763222 111111 1122121111100000 0 1112
Q ss_pred CcceeeceecccCHH---HHHHHhcCCCCCCCCCEEEeeCCccccccccccCCCceEecCCCCCchh
Q 011431 307 TSAAHPYVEDVIDDA---YMEDITDDSSPSLNLSRINSTSRFEQLWPETISATDTCTEDVTVDNSPS 370 (486)
Q Consensus 307 tKr~LlVLDDVw~~~---~~~~l~~~~~~~~~GSrIIiTTR~~~V~~~~~~~~~~~y~v~~L~~~es 370 (486)
+..+|++|++..-. ....+....-......++|+||....-+.........++++++++.++-
T Consensus 105 -~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~ 170 (324)
T 3u61_B 105 -RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDK 170 (324)
T ss_dssp -CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHH
T ss_pred -CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHH
Confidence 56789999998532 3333332110112356788877654422111000123688999987774
No 77
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.40 E-value=0.14 Score=52.85 Aligned_cols=126 Identities=9% Similarity=0.005 Sum_probs=64.4
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHHHHHHHhhhhccccccccccccccccccccccccc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKKLDQRLLRFLESVDKHVASYDRYGSASFEQPRPQT 306 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~l~~~L~~ 306 (486)
...+-+||-. |.||||||+.+.+.....|.. ..........+.. ++..... . ....
T Consensus 50 ~~~vLL~Gpp-GtGKTtlAr~ia~~~~~~f~~----l~a~~~~~~~ir~-~~~~a~~---------------~---~~~~ 105 (447)
T 3pvs_A 50 LHSMILWGPP-GTGKTTLAEVIARYANADVER----ISAVTSGVKEIRE-AIERARQ---------------N---RNAG 105 (447)
T ss_dssp CCEEEEECST-TSSHHHHHHHHHHHTTCEEEE----EETTTCCHHHHHH-HHHHHHH---------------H---HHTT
T ss_pred CcEEEEECCC-CCcHHHHHHHHHHHhCCCeEE----EEeccCCHHHHHH-HHHHHHH---------------h---hhcC
Confidence 3556699999 999999999998876444321 1111122222211 1111100 0 0012
Q ss_pred CcceeeceecccCH--HHHHHHhcCCCCCCCCCEEEeeCCccc--cccccccCCCceEecCCCCCchhhhhhcccCC
Q 011431 307 TSAAHPYVEDVIDD--AYMEDITDDSSPSLNLSRINSTSRFEQ--LWPETISATDTCTEDVTVDNSPSLNLSSCNSS 379 (486)
Q Consensus 307 tKr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIIiTTR~~~--V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a~ 379 (486)
+..+|++|++... .....++... +.+.-.-|..||.+.. +.. .......++.+++|+.++-..++.+.+.
T Consensus 106 -~~~iLfIDEI~~l~~~~q~~LL~~l-e~~~v~lI~att~n~~~~l~~-aL~sR~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 106 -RRTILFVDEVHRFNKSQQDAFLPHI-EDGTITFIGATTENPSFELNS-ALLSRARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp -CCEEEEEETTTCC------CCHHHH-HTTSCEEEEEESSCGGGSSCH-HHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred -CCcEEEEeChhhhCHHHHHHHHHHH-hcCceEEEecCCCCcccccCH-HHhCceeEEeeCCcCHHHHHHHHHHHHH
Confidence 5678899998742 2333333211 1222223334665543 211 1111224788999999998888876543
No 78
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=91.26 E-value=0.28 Score=53.71 Aligned_cols=59 Identities=8% Similarity=0.132 Sum_probs=51.9
Q ss_pred eeeecc-ccccchhhHHHHHHHhhcCCCeeEEEeecCCCeEEEEee--ccCHHHHHHHhhcccc
Q 011431 385 AIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISFDFKVKKMTVVGD--NFDVLSAGTKLNGLCR 445 (486)
Q Consensus 385 ~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~d~~~~~~~V~G~--~~d~~~~~~~l~k~~~ 445 (486)
+.++++ |+|..|. ..+.+.+.+.+||+++.++...++++|.-+ .+++..+.+.+++.|.
T Consensus 4 ~~l~V~GM~Ca~Ca--~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy 65 (723)
T 3j09_A 4 RTVRVTGMTCAMCV--KSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGY 65 (723)
T ss_dssp EEEEEETCCSHHHH--HHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCC
T ss_pred EEEEeCCCCchHHH--HHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCC
Confidence 455664 9999999 999999999999999999999999999864 3789999999999873
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.65 E-value=1.4 Score=43.19 Aligned_cols=70 Identities=11% Similarity=-0.033 Sum_probs=40.2
Q ss_pred cceeeceecccC--HHHHHHHhcCCCCCCCCCEEEeeCCccc-cccccccCCCceEecCCCCCchhhhhhcccC
Q 011431 308 SAAHPYVEDVID--DAYMEDITDDSSPSLNLSRINSTSRFEQ-LWPETISATDTCTEDVTVDNSPSLNLSSCNS 378 (486)
Q Consensus 308 Kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 378 (486)
++.++|+|++.. ......++...-+-.....+|++|.+.+ +...- ......+++++++.++..+.+...+
T Consensus 108 ~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti-~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL-RSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp SCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH-HTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred CcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH-hhcceeeeCCCCCHHHHHHHHHHhc
Confidence 567888999874 3333444421101123567666665543 43211 1122478999999998887776554
No 80
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.50 E-value=0.53 Score=45.83 Aligned_cols=47 Identities=6% Similarity=-0.113 Sum_probs=29.4
Q ss_pred CCCCEEEeeCCccccccccc-cCCCceEecCCCCCchhhhhhcccCCC
Q 011431 334 LNLSRINSTSRFEQLWPETI-SATDTCTEDVTVDNSPSLNLSSCNSSS 380 (486)
Q Consensus 334 ~~GSrIIiTTR~~~V~~~~~-~~~~~~y~v~~L~~~es~~LF~~~a~~ 380 (486)
..+..||.||...+-+.... ..-+..+.++..+.++-.++|..++..
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 34566776776544432110 012456788889999999999877654
No 81
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.91 E-value=0.15 Score=44.13 Aligned_cols=22 Identities=0% Similarity=-0.352 Sum_probs=19.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+|.+.|+. |.||||+++.+ ..
T Consensus 2 ~~I~l~G~~-GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMP-GSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCT-TSCHHHHHHHH-HH
T ss_pred cEEEEECCC-CCCHHHHHHHH-HH
Confidence 468899999 99999999999 54
No 82
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.71 E-value=0.62 Score=45.60 Aligned_cols=27 Identities=4% Similarity=-0.167 Sum_probs=22.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..++|+++|.+ |.||||++..+-..+.
T Consensus 104 ~~~vI~ivG~~-G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVN-GTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESST-TSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHHH
Confidence 45789999998 9999999988866543
No 83
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.64 E-value=0.76 Score=48.05 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=21.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+.+-++|.. |+||||||+.+.+.+
T Consensus 77 ~~~lLL~Gpp-GtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPP-GIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECST-TSSHHHHHHHHHHHT
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHc
Confidence 3566789999 999999999998876
No 84
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.22 E-value=0.85 Score=44.60 Aligned_cols=145 Identities=7% Similarity=-0.054 Sum_probs=71.1
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhccccc---cceEEEEeee----ccHHHHHHHHhhhhcccccccccccccccccc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLMDNYE---NSDVTLAKFE----GEVKKLDQRLLRFLESVDKHVASYDRYGSASF 299 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~---~~~~~~v~~~----~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~ 299 (486)
...+-|+|.. |.|||++++.+.+.+..... ...+..+.+. .....+-..|+..|.+.....+ .....
T Consensus 45 ~~~lli~GpP-GTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~-----~~~~~ 118 (318)
T 3te6_A 45 NKLFYITNAD-DSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGD-----ISLEA 118 (318)
T ss_dssp CCEEEEECCC-SHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CC-----CCHHH
T ss_pred CCeEEEECCC-CCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCch-----HHHHH
Confidence 3455689999 99999999999988753221 1112223332 1222345556666644211000 00011
Q ss_pred cccccc-----cCcceeeceecccCH---HHHHHHhcCCCCCCCCCEE--EeeCCcccccccc------ccCCCceEecC
Q 011431 300 EQPRPQ-----TTSAAHPYVEDVIDD---AYMEDITDDSSPSLNLSRI--NSTSRFEQLWPET------ISATDTCTEDV 363 (486)
Q Consensus 300 l~~~L~-----~tKr~LlVLDDVw~~---~~~~~l~~~~~~~~~GSrI--IiTTR~~~V~~~~------~~~~~~~y~v~ 363 (486)
|++++. ..+..+|+||.+..- ..+-.+.. |.....|++ |.++-..+..... +......++.+
T Consensus 119 L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~--~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~ 196 (318)
T 3te6_A 119 LNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEK--WISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLN 196 (318)
T ss_dssp HHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHH--HHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECC
T ss_pred HHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHh--cccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeC
Confidence 222211 225789999998753 22323322 111234433 3334443321100 00011357788
Q ss_pred CCCCchhhhhhcccCC
Q 011431 364 TVDNSPSLNLSSCNSS 379 (486)
Q Consensus 364 ~L~~~es~~LF~~~a~ 379 (486)
+++.+|-.+++...+.
T Consensus 197 pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 197 KVDKNELQQMIITRLK 212 (318)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888887766543
No 85
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.08 E-value=0.18 Score=44.57 Aligned_cols=26 Identities=0% Similarity=-0.156 Sum_probs=22.4
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
-..+.++|.. |.|||||++.+.+.+.
T Consensus 38 g~~~~l~G~~-G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSP-GVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSS-SSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHHH
Confidence 3567899999 9999999999988764
No 86
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.75 E-value=0.38 Score=46.46 Aligned_cols=29 Identities=7% Similarity=-0.380 Sum_probs=24.0
Q ss_pred CCCceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 224 AEGYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 224 ~~~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.....+|+|.|.. |.|||||++.+...+.
T Consensus 28 ~~~~~ii~I~G~s-GsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQ-GSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCT-TSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCC-CCCHHHHHHHHHHHhh
Confidence 3456799999999 9999999998876553
No 87
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.37 E-value=0.44 Score=41.45 Aligned_cols=37 Identities=3% Similarity=-0.051 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCCceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 215 DEVLSLLRNAEGYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 215 ~~v~~ll~~~~~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
+.+...+... ..+.+-++|.. |.||||||+.+.+.+.
T Consensus 32 ~~l~~~l~~~-~~~~~ll~G~~-G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 32 RRTIQVLQRR-TKNNPVLIGEP-GVGKTAIVEGLAQRII 68 (195)
T ss_dssp HHHHHHHTSS-SSCEEEEECCT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCceEEECCC-CCCHHHHHHHHHHHHH
Confidence 3444444332 23445689999 9999999999988653
No 88
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.16 E-value=0.26 Score=42.72 Aligned_cols=25 Identities=8% Similarity=-0.314 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
++|.|.|+. |.||||+++.+-.++.
T Consensus 2 ~~i~l~G~~-GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPD-CCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSS-SSSHHHHHHHHHHHHC
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHhC
Confidence 467899999 9999999999876653
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.05 E-value=0.43 Score=42.75 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=22.8
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDN 255 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~ 255 (486)
+.+-|+|.. |.||||||+++++.....
T Consensus 55 ~~~~l~G~~-GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSF-GVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECST-TSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCC-CCCHHHHHHHHHHHHHHc
Confidence 566799999 999999999999876543
No 90
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=87.71 E-value=0.46 Score=43.00 Aligned_cols=28 Identities=7% Similarity=-0.263 Sum_probs=23.3
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..-.+++|.|-. |-|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~s-GsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAP-GSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCT-TSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCC-CCCHHHHHHHHHHHHh
Confidence 355789999999 9999999999876543
No 91
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.50 E-value=0.87 Score=46.62 Aligned_cols=24 Identities=4% Similarity=-0.227 Sum_probs=20.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+-|-++|.. |.|||+||+++.+..
T Consensus 168 ~~vLL~Gpp-GtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPP-GTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECST-TSSHHHHHHHHHHHC
T ss_pred ceEEEECCC-CCCHHHHHHHHHHHc
Confidence 456689999 999999999998876
No 92
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.20 E-value=0.31 Score=42.63 Aligned_cols=25 Identities=8% Similarity=-0.292 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
++|-+.|+. |.||||+++.+-.++.
T Consensus 4 ~~i~l~G~~-GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGS-SAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHHSS
T ss_pred eEEEEECCC-CCCHHHHHHHHHHhcC
Confidence 357789999 9999999999977653
No 93
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.91 E-value=1.1 Score=44.85 Aligned_cols=27 Identities=4% Similarity=-0.235 Sum_probs=21.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDN 255 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~ 255 (486)
+-+-++|-. |.|||+||+++.+.....
T Consensus 149 ~~vLL~Gpp-GtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 149 RGLLLFGPP-GNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp SEEEEESST-TSCHHHHHHHHHHHTTCE
T ss_pred ceEEEECCC-CCCHHHHHHHHHHhhcCc
Confidence 345689999 999999999998775433
No 94
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.76 E-value=0.33 Score=43.60 Aligned_cols=25 Identities=4% Similarity=-0.320 Sum_probs=21.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..+|.|.|+. |.||||+++.+-..+
T Consensus 25 ~~~i~l~G~~-GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYM-GAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCT-TSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCC-CCCHHHHHHHHHHHc
Confidence 3578899999 999999999997665
No 95
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.63 E-value=0.31 Score=43.14 Aligned_cols=23 Identities=0% Similarity=-0.411 Sum_probs=20.4
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++++|+. |.|||||++.+...
T Consensus 10 ~~i~l~G~~-GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHP-GSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECT-TSCHHHHHHHHHTC
T ss_pred eEEEEECCC-CCCHHHHHHHHHhc
Confidence 578999999 99999999998664
No 96
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.58 E-value=0.69 Score=41.61 Aligned_cols=27 Identities=11% Similarity=-0.107 Sum_probs=22.6
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
....+|+|.|.. |.|||||++.+...+
T Consensus 20 ~~~~~i~i~G~~-GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLS-RSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECT-TSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCC-CCCHHHHHHHHHHHH
Confidence 345789999999 999999999886644
No 97
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=85.98 E-value=0.38 Score=42.92 Aligned_cols=24 Identities=4% Similarity=-0.157 Sum_probs=20.6
Q ss_pred eeeeeeccCccchhHHHHHHHhhhc
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.|.|.|+- |.||||+++.+-..+.
T Consensus 2 ~I~i~G~~-GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTV-GAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCT-TSCHHHHHHHHHHHHC
T ss_pred EEEEECCC-ccCHHHHHHHHHHhcC
Confidence 57899999 9999999999977653
No 98
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.89 E-value=0.37 Score=41.90 Aligned_cols=24 Identities=13% Similarity=-0.194 Sum_probs=20.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|+|.|+. |.|||||++.+-..+
T Consensus 5 ~~i~l~G~~-GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPM-GAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCT-TSCHHHHHHHHHHHT
T ss_pred CeEEEECCC-CCCHHHHHHHHHHHh
Confidence 468899999 999999999986654
No 99
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.64 E-value=0.35 Score=42.75 Aligned_cols=27 Identities=4% Similarity=-0.075 Sum_probs=22.4
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..++++|.|.. |.|||||+..+...+.
T Consensus 3 ~~~~i~i~G~s-GsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYK-HSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCT-TSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCC-CCCHHHHHHHHHHhhH
Confidence 45789999988 9999999999877654
No 100
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.53 E-value=0.69 Score=40.13 Aligned_cols=25 Identities=0% Similarity=-0.231 Sum_probs=20.8
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
+.+-++|.. |.||||||+.+.+...
T Consensus 44 ~~vll~G~~-G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 44 NNPILLGDP-GVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CEEEEESCG-GGCHHHHHHHHHHHHH
T ss_pred CceEEECCC-CCCHHHHHHHHHHHHH
Confidence 345689999 9999999999988753
No 101
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.38 E-value=0.4 Score=42.16 Aligned_cols=25 Identities=0% Similarity=-0.359 Sum_probs=21.0
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+.|.|.|+. |.||||+++.+-..+
T Consensus 11 ~~~i~i~G~~-GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTP-GVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECST-TSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCC-CCCHHHHHHHHHHHh
Confidence 3567799999 999999999987654
No 102
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=85.36 E-value=1.1 Score=35.32 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=43.0
Q ss_pred eeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEe-----ecCCC--eEEEEeeccCHHHHHHHhhccc
Q 011431 383 KEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISF-----DFKVK--KMTVVGDNFDVLSAGTKLNGLC 444 (486)
Q Consensus 383 ~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~-----d~~~~--~~~V~G~~~d~~~~~~~l~k~~ 444 (486)
..+||-|. .|..... ..-+.+++++||+.|.+ |.+.. ++||.|+++|-..+.+.+.+.|
T Consensus 7 RRlVLDVlKPh~P~iv---dlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~G 73 (100)
T 3bpd_A 7 RRLVLDVLKPHEPKTI---VFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMG 73 (100)
T ss_dssp EEEEEEEEEESCSCHH---HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTT
T ss_pred eEEEEEecCCCCCCHH---HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcC
Confidence 45555553 2444443 45566789999999876 44443 7899999999999999999977
No 103
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.33 E-value=0.44 Score=41.95 Aligned_cols=24 Identities=8% Similarity=-0.247 Sum_probs=20.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+.|.+.|+. |.||||+++.+-..+
T Consensus 6 ~~i~l~G~~-GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLM-GAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECST-TSSHHHHHHHHHHHH
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHh
Confidence 467799999 999999999987665
No 104
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.00 E-value=0.39 Score=41.35 Aligned_cols=26 Identities=15% Similarity=-0.038 Sum_probs=22.2
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
-..++|+|-. |.|||||++.+.+...
T Consensus 36 g~~~~l~G~~-G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEE-GAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSS-TTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHHH
Confidence 3568899999 9999999999988654
No 105
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=84.98 E-value=0.39 Score=43.11 Aligned_cols=25 Identities=8% Similarity=-0.295 Sum_probs=21.5
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..+|.|.|+. |.||||+|+.+...+
T Consensus 18 ~~~I~l~G~~-GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVS-GSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECST-TSCHHHHHHHHHHHH
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHh
Confidence 4578899999 999999999987664
No 106
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=84.81 E-value=0.44 Score=42.12 Aligned_cols=24 Identities=0% Similarity=-0.158 Sum_probs=21.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
++++|+|.. |.|||||++.+....
T Consensus 6 ~~i~i~Gps-GsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAH-GVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHHC
T ss_pred CEEEEECCC-CCCHHHHHHHHHhhC
Confidence 578899999 999999999987654
No 107
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=84.62 E-value=0.5 Score=41.61 Aligned_cols=25 Identities=12% Similarity=-0.197 Sum_probs=21.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
++|.|.|+. |.||||+++.+...+.
T Consensus 2 ~~I~i~G~~-GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIP-GVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECT-TSCHHHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHHH
Confidence 467789999 9999999999977654
No 108
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.53 E-value=1.4 Score=43.86 Aligned_cols=26 Identities=12% Similarity=-0.199 Sum_probs=22.2
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
-.+++++|.. |.|||||++.+...+.
T Consensus 157 g~vi~lvG~n-GsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVN-GGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCT-TSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCC-CChHHHHHHHHHhhcc
Confidence 4689999999 9999999999877553
No 109
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=84.48 E-value=0.69 Score=45.92 Aligned_cols=31 Identities=3% Similarity=-0.233 Sum_probs=24.7
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhhcccc
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQLMDNY 256 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F 256 (486)
+....|.++|+. |.||||+++.+...+...|
T Consensus 22 g~~~~i~l~G~~-G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSP-GSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCT-TSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCC-CCcHHHHHHHHHHHhCCCe
Confidence 345568899999 9999999999887765544
No 110
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=84.40 E-value=1.3 Score=42.93 Aligned_cols=26 Identities=12% Similarity=-0.199 Sum_probs=22.1
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
-.+++++|.. |.||||+++.+...+.
T Consensus 100 g~vi~lvG~n-GsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVN-GGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCT-TSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCC-CCCHHHHHHHHHHHHH
Confidence 4689999999 9999999999876543
No 111
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=84.32 E-value=0.49 Score=43.62 Aligned_cols=28 Identities=11% Similarity=-0.167 Sum_probs=22.6
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..++|++++.-||+||||++-++-..+.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la 30 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALS 30 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHH
Confidence 4578999988789999999988755443
No 112
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.27 E-value=0.77 Score=41.68 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=22.1
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
....|.++|-+ |+|||||+..+....
T Consensus 37 ~~~~i~ivG~~-gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAI-GSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEEST-TSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCC-CCCHHHHHHHHHHHh
Confidence 56788899999 999999998887654
No 113
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=84.21 E-value=0.47 Score=41.33 Aligned_cols=22 Identities=0% Similarity=-0.398 Sum_probs=19.3
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.+|.+.|+. |.||||+|+.+-.
T Consensus 3 ~~I~i~G~~-GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCP-GSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHH
T ss_pred eEEEEecCC-CCCHHHHHHHHHh
Confidence 467899999 9999999999865
No 114
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.13 E-value=0.92 Score=41.24 Aligned_cols=122 Identities=8% Similarity=-0.057 Sum_probs=64.1
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHHHHHHHhhhhccccccccccccccccccccccccc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKKLDQRLLRFLESVDKHVASYDRYGSASFEQPRPQT 306 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~l~~~L~~ 306 (486)
.+.+-|+|.. |.||||||+.+.+...... ..+..+.... + .. .....+ +.+ .
T Consensus 52 ~~~~ll~G~~-G~GKT~la~~l~~~~~~~~--~~~~~~~~~~-~-----------~~-----------~~~~~~-~~~-~ 103 (242)
T 3bos_A 52 VQAIYLWGPV-KSGRTHLIHAACARANELE--RRSFYIPLGI-H-----------AS-----------ISTALL-EGL-E 103 (242)
T ss_dssp CSEEEEECST-TSSHHHHHHHHHHHHHHTT--CCEEEEEGGG-G-----------GG-----------SCGGGG-TTG-G
T ss_pred CCeEEEECCC-CCCHHHHHHHHHHHHHHcC--CeEEEEEHHH-H-----------HH-----------HHHHHH-Hhc-c
Confidence 4556699999 9999999999988664331 1112221110 0 00 000011 112 2
Q ss_pred CcceeeceecccCHH--H--HHHHh---cCCCCCCCC-CEEEeeCCcccc-c----ccc--ccCCCceEecCCCCCchhh
Q 011431 307 TSAAHPYVEDVIDDA--Y--MEDIT---DDSSPSLNL-SRINSTSRFEQL-W----PET--ISATDTCTEDVTVDNSPSL 371 (486)
Q Consensus 307 tKr~LlVLDDVw~~~--~--~~~l~---~~~~~~~~G-SrIIiTTR~~~V-~----~~~--~~~~~~~y~v~~L~~~es~ 371 (486)
+..+|++||+.... . ...+. ... ...+ .++|+||+...- + ... .......+++.+++.++..
T Consensus 104 -~~~vliiDe~~~~~~~~~~~~~l~~~l~~~--~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~ 180 (242)
T 3bos_A 104 -QFDLICIDDVDAVAGHPLWEEAIFDLYNRV--AEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKL 180 (242)
T ss_dssp -GSSEEEEETGGGGTTCHHHHHHHHHHHHHH--HHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHH
T ss_pred -CCCEEEEeccccccCCHHHHHHHHHHHHHH--HHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHH
Confidence 45788999987421 1 22222 111 1113 257777764321 1 000 0011257899999999999
Q ss_pred hhhcccCC
Q 011431 372 NLSSCNSS 379 (486)
Q Consensus 372 ~LF~~~a~ 379 (486)
+++...+.
T Consensus 181 ~~l~~~~~ 188 (242)
T 3bos_A 181 AALQRRAA 188 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887653
No 115
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.12 E-value=0.54 Score=40.75 Aligned_cols=26 Identities=4% Similarity=-0.262 Sum_probs=21.1
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..++|+|.|+. |.||||+++.+-.++
T Consensus 6 ~~~~i~l~G~~-GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFM-GSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCT-TSSHHHHHHHHHHHH
T ss_pred ccceEEEECCC-CCCHHHHHHHHHHHh
Confidence 45788999999 999999999986654
No 116
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=84.07 E-value=0.53 Score=41.04 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=21.2
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
-.+|+|.|+. |.||||+++.+....
T Consensus 8 g~~i~l~G~~-GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVS-GSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECST-TSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCC-CCCHHHHHHHHHHhh
Confidence 3578999999 999999999986654
No 117
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.85 E-value=0.48 Score=42.50 Aligned_cols=22 Identities=5% Similarity=-0.370 Sum_probs=19.4
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.+|+|.|+. |.||||+++.+-.
T Consensus 2 ~~i~i~G~~-GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNI-GCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHH
T ss_pred eEEEEECCC-CcCHHHHHHHHHH
Confidence 368999999 9999999999865
No 118
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=83.83 E-value=0.55 Score=41.52 Aligned_cols=26 Identities=12% Similarity=-0.293 Sum_probs=22.1
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
-.+|.+.|+. |.||||+++.+...+.
T Consensus 13 ~~~i~l~G~~-GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLP-GSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCT-TSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCC-CCCHHHHHHHHHHHHH
Confidence 4678899999 9999999999977653
No 119
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=83.69 E-value=0.49 Score=42.31 Aligned_cols=25 Identities=8% Similarity=-0.165 Sum_probs=20.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
++|++++.-||+||||++-++-..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l 26 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL 26 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH
Confidence 5788887777999999998775544
No 120
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=83.42 E-value=0.56 Score=41.28 Aligned_cols=25 Identities=4% Similarity=-0.226 Sum_probs=21.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.+|.|.|+. |.||||+++.+-..+.
T Consensus 4 ~~I~i~G~~-GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVP-GVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCT-TSCHHHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHHH
Confidence 467899999 9999999999877553
No 121
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=83.34 E-value=0.54 Score=42.76 Aligned_cols=26 Identities=4% Similarity=-0.265 Sum_probs=20.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
++|++++.-||+||||++-++-..+.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la 26 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLA 26 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHH
Confidence 36788877779999999988765544
No 122
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=83.33 E-value=0.53 Score=41.68 Aligned_cols=22 Identities=5% Similarity=-0.233 Sum_probs=19.3
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.++++.|.. |.|||||++.+..
T Consensus 3 ~ii~l~G~~-GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPA-GVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECST-TSSHHHHHHHHHH
T ss_pred eEEEEECCC-CCcHHHHHHHHhc
Confidence 467899999 9999999999965
No 123
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=83.24 E-value=0.52 Score=42.51 Aligned_cols=25 Identities=0% Similarity=-0.133 Sum_probs=21.4
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
-++|.+.|+. |.|||||++.+-...
T Consensus 12 ~~~i~l~G~s-GsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPS-GVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCT-TSCHHHHHHHHHHHC
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHhC
Confidence 4578899999 999999999987665
No 124
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.19 E-value=0.6 Score=42.04 Aligned_cols=26 Identities=4% Similarity=-0.277 Sum_probs=21.9
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....+|+|.|.. |.||||+++.+-..
T Consensus 19 ~~~~~i~i~G~~-GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVT-NSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEEST-TSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCC-CCCHHHHHHHHHHh
Confidence 345789999999 99999999988654
No 125
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.17 E-value=0.57 Score=41.59 Aligned_cols=25 Identities=8% Similarity=-0.192 Sum_probs=21.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
+++++.|.. |.|||||++.+.....
T Consensus 2 ~ii~l~Gps-GaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPS-GTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSS-SSSHHHHHHHHHHHCG
T ss_pred CEEEEECCC-CCCHHHHHHHHHhhCC
Confidence 478899999 9999999999976554
No 126
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.15 E-value=0.57 Score=42.05 Aligned_cols=25 Identities=4% Similarity=-0.145 Sum_probs=21.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
-.+|+|.|.. |.|||||++.+...+
T Consensus 29 g~~i~l~G~~-GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVS-GSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCT-TSCHHHHHHHHHHHH
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHhh
Confidence 4688999999 999999999997654
No 127
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=83.01 E-value=0.55 Score=45.87 Aligned_cols=25 Identities=8% Similarity=-0.005 Sum_probs=20.1
Q ss_pred CCceeeeeeeccCccchhHHHHHHHh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.+.++|+|.|=| |+||||.+-++=-
T Consensus 46 ~~aKVIAIaGKG-GVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKG-GIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECST-TSSHHHHHHHHHH
T ss_pred CCceEEEEECCC-ccCHHHHHHHHHH
Confidence 478999999977 9999998776533
No 128
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=83.00 E-value=1.5 Score=34.32 Aligned_cols=58 Identities=10% Similarity=0.198 Sum_probs=42.6
Q ss_pred eeeeec--cccccchhhHHHHHHHhhcCCCeeEEEe-----ecCCC--eEEEEeeccCHHHHHHHhhccc
Q 011431 384 EAIFKL--EIHHDNLEAWRAAFSIVSEFIGITKISF-----DFKVK--KMTVVGDNFDVLSAGTKLNGLC 444 (486)
Q Consensus 384 ~~v~kv--~~~~~~~~~~~~a~k~~~~~~Gv~~v~~-----d~~~~--~~~V~G~~~d~~~~~~~l~k~~ 444 (486)
.+||-| .+|....- ..-+.+++++||+.|.+ |.+.. ++|+.|+++|-..+.+.+.+.|
T Consensus 6 RlVLDVlKP~h~P~iv---d~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~G 72 (96)
T 2x3d_A 6 RLVLDVLKPIRGTSIV---DLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEG 72 (96)
T ss_dssp EEEEEEEEESSSSCHH---HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTT
T ss_pred EEEEEcccCCCCCCHH---HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcC
Confidence 444444 34555553 44566789999999876 44443 7999999999999999999977
No 129
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=82.91 E-value=0.51 Score=42.49 Aligned_cols=23 Identities=0% Similarity=-0.321 Sum_probs=20.1
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+|.|.|.. |.||||+++.+...+
T Consensus 2 ~I~i~G~~-GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVD-GAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEE-EEEHHHHHHHHHHHH
T ss_pred EEEEEcCC-CCCHHHHHHHHHHHH
Confidence 67899999 999999999987655
No 130
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=82.84 E-value=0.93 Score=40.94 Aligned_cols=26 Identities=4% Similarity=-0.027 Sum_probs=22.4
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...+|.++|-+ |.|||||+..+....
T Consensus 29 ~~~~i~i~G~~-g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAI-GSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECT-TSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCC-CCCHHHHHHHHHHHh
Confidence 56789999999 999999998887654
No 131
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=82.81 E-value=0.59 Score=41.77 Aligned_cols=24 Identities=4% Similarity=-0.396 Sum_probs=21.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|.|.. |.|||||++.+....
T Consensus 7 ~~i~l~G~~-GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPS-GVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECST-TSCHHHHHHHHHHCT
T ss_pred CEEEEECCC-CCCHHHHHHHHHHhh
Confidence 578999999 999999999987654
No 132
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=82.80 E-value=0.64 Score=41.39 Aligned_cols=26 Identities=4% Similarity=-0.500 Sum_probs=22.1
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....+|+|.|+. |.||||+++.+-..
T Consensus 6 ~~~~~I~i~G~~-GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNI-GSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECT-TSCHHHHHHHHHHT
T ss_pred cCceEEEEECCC-CCCHHHHHHHHHHC
Confidence 356789999999 99999999988554
No 133
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=82.63 E-value=0.61 Score=41.03 Aligned_cols=24 Identities=8% Similarity=-0.291 Sum_probs=20.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|.|.|+. |.||||+|+.+-..+
T Consensus 3 ~~I~l~G~~-GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLP-GSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECST-TSSHHHHHHHHHHHH
T ss_pred CeEEEECCC-CCCHHHHHHHHHHHc
Confidence 357899999 999999999986654
No 134
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=82.57 E-value=1.8 Score=44.91 Aligned_cols=26 Identities=4% Similarity=-0.258 Sum_probs=22.1
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
-.+++|+|.. |.|||||++.+...+.
T Consensus 293 GeVI~LVGpN-GSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVN-GVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCT-TSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCC-cccHHHHHHHHHHHhh
Confidence 4689999999 9999999999876543
No 135
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.44 E-value=0.66 Score=41.63 Aligned_cols=27 Identities=7% Similarity=-0.301 Sum_probs=22.6
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.-.+|.|.|+. |-|||||++.+-..+.
T Consensus 24 ~g~~i~l~G~s-GsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLS-GSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECST-TSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHHH
Confidence 34688999999 9999999999976653
No 136
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.35 E-value=0.78 Score=41.02 Aligned_cols=27 Identities=4% Similarity=-0.344 Sum_probs=22.6
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
....+|.|.|+. |.||||+++.+.+..
T Consensus 13 ~~~~~I~l~G~~-GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGP-GAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECST-TSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCC-CCCHHHHHHHHHHHc
Confidence 356789999999 999999999887654
No 137
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=82.30 E-value=0.64 Score=40.60 Aligned_cols=23 Identities=4% Similarity=-0.198 Sum_probs=19.9
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.|.|.|+. |.||||+++.+-..+
T Consensus 6 ~i~i~G~~-GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFM-GSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCT-TSCHHHHHHHHHHHH
T ss_pred EEEEEcCC-CCCHHHHHHHHHHHc
Confidence 57789999 999999999987654
No 138
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=82.13 E-value=0.6 Score=41.73 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=20.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|.|.. |.|||||++.+....
T Consensus 8 ~ii~l~Gp~-GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPS-GAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCT-TSCHHHHHHHHHHHS
T ss_pred cEEEEECcC-CCCHHHHHHHHHhhC
Confidence 578999999 999999999987653
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=82.11 E-value=0.67 Score=41.11 Aligned_cols=24 Identities=8% Similarity=-0.213 Sum_probs=20.8
Q ss_pred eeeeeeccCccchhHHHHHHHhhhc
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.++|+|-- |.|||||++.+...+.
T Consensus 2 ~i~l~G~n-GsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEP-GVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCT-TSSHHHHHHHHHHHHG
T ss_pred EEEEECCC-CCCHHHHHHHHHHHhC
Confidence 57899999 9999999999987654
No 140
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.03 E-value=0.78 Score=40.43 Aligned_cols=24 Identities=4% Similarity=-0.327 Sum_probs=20.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|-+.|+. |.||||+++.+-..+
T Consensus 6 ~~I~l~G~~-GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHP-ATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEEST-TSSHHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHc
Confidence 577899999 999999999986654
No 141
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=81.84 E-value=0.69 Score=41.65 Aligned_cols=26 Identities=4% Similarity=-0.342 Sum_probs=22.0
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.-.+|+|.|.. |-|||||++.+...+
T Consensus 5 ~~~~i~i~G~~-GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGT-ASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEEST-TSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCC-CCCHHHHHHHHHHHh
Confidence 34689999999 999999999987654
No 142
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=81.84 E-value=0.65 Score=43.65 Aligned_cols=29 Identities=3% Similarity=-0.286 Sum_probs=23.4
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
...++|.+++.-||+||||+|-++=..+.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS 53 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 46789999988889999999988765554
No 143
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=81.58 E-value=0.68 Score=43.10 Aligned_cols=26 Identities=8% Similarity=-0.290 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
++|++++..||+||||+|-++-..+.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la 28 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLA 28 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 57889888889999999987755443
No 144
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=81.58 E-value=0.78 Score=39.54 Aligned_cols=23 Identities=9% Similarity=-0.243 Sum_probs=19.8
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.|.|.|+. |.||||+++.+-+.+
T Consensus 2 ~I~l~G~~-GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFM-CSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCT-TSCHHHHHHHHHHHH
T ss_pred eEEEECCC-CCCHHHHHHHHHHHh
Confidence 57889999 999999999986654
No 145
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=81.43 E-value=1.6 Score=34.23 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=42.7
Q ss_pred eeeeeecc-ccccchhhHHHHHHHhhcCCCeeEEEe-----ecCCC--eEEEEeeccCHHHHHHHhhccc
Q 011431 383 KEAIFKLE-IHHDNLEAWRAAFSIVSEFIGITKISF-----DFKVK--KMTVVGDNFDVLSAGTKLNGLC 444 (486)
Q Consensus 383 ~~~v~kv~-~~~~~~~~~~~a~k~~~~~~Gv~~v~~-----d~~~~--~~~V~G~~~d~~~~~~~l~k~~ 444 (486)
..+||-|. .|....- ..-+.+++++||+.|.+ |.+.. ++|+.|+++|-..+.+.+.+.|
T Consensus 7 rRlVLDVlKPh~p~i~---d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~G 73 (97)
T 2raq_A 7 IRIVLDILKPHEPIIP---EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYG 73 (97)
T ss_dssp EEEEEEEECCSCSCHH---HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTT
T ss_pred eEEEEEecCCCCCCHH---HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcC
Confidence 44555553 2444443 44456778999988876 55544 7999999999999999999977
No 146
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.42 E-value=0.82 Score=43.93 Aligned_cols=30 Identities=7% Similarity=-0.343 Sum_probs=23.9
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhcccc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLMDNY 256 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F 256 (486)
..+.+-++|.. |.|||+||+++.+.....|
T Consensus 35 ~p~~lLl~Gpp-GtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 35 VPLILGIWGGK-GQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCSEEEEEECT-TSCHHHHHHHHHHHHTCCC
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHhCCCE
Confidence 44566789999 9999999999998874433
No 147
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=81.42 E-value=0.71 Score=39.96 Aligned_cols=24 Identities=8% Similarity=-0.309 Sum_probs=20.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
++|.|.|+. |.||||+++.+-..+
T Consensus 3 ~~I~l~G~~-GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGAR-GCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCT-TSSHHHHHHHHHHHH
T ss_pred ceEEEECCC-CCCHHHHHHHHHHHh
Confidence 367899999 999999999986654
No 148
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.37 E-value=0.79 Score=40.51 Aligned_cols=25 Identities=4% Similarity=-0.423 Sum_probs=21.3
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..+|.+.|+. |.||||+++.+-+.+
T Consensus 9 ~~~I~l~G~~-GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGP-GSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECT-TSSHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHh
Confidence 3578899999 999999999986654
No 149
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=81.22 E-value=0.75 Score=40.52 Aligned_cols=23 Identities=4% Similarity=-0.353 Sum_probs=20.0
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+|++.|+- |.||||+++.+-+.+
T Consensus 2 ~I~l~G~~-GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGID-GSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECST-TSCHHHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHHHHH
Confidence 57889999 999999999987755
No 150
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=81.22 E-value=0.81 Score=40.57 Aligned_cols=24 Identities=4% Similarity=-0.399 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|.+.|+. |.||||+++.+-..+
T Consensus 13 ~~I~l~G~~-GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGP-GSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHHH
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHh
Confidence 578899999 999999999987654
No 151
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=81.17 E-value=0.83 Score=40.21 Aligned_cols=24 Identities=4% Similarity=-0.418 Sum_probs=20.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|.+.|+. |.||||+|+.+-..+
T Consensus 4 ~~I~l~G~~-GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGP-GAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHh
Confidence 468899999 999999999886654
No 152
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.08 E-value=0.68 Score=40.52 Aligned_cols=24 Identities=4% Similarity=-0.298 Sum_probs=16.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|.+.|+. |.||||+|+.+-..+
T Consensus 6 ~~I~l~G~~-GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPF-GVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC-----CHHHHHHHHHS
T ss_pred eEEEEECCC-CCCHHHHHHHHHHhc
Confidence 467899999 999999999986654
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.01 E-value=0.67 Score=44.80 Aligned_cols=26 Identities=4% Similarity=-0.253 Sum_probs=21.7
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.-.+++++|.+ |.||||++..+-..+
T Consensus 104 ~g~vi~lvG~~-GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGST-GAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEEST-TSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCC-CCCHHHHHHHHHHHH
Confidence 34689999999 999999998886544
No 154
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=81.00 E-value=0.75 Score=41.84 Aligned_cols=24 Identities=4% Similarity=-0.330 Sum_probs=20.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|+|.|.. |.||||+++.+-...
T Consensus 6 ~~i~i~G~~-GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPS-GAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHh
Confidence 478999999 999999999886543
No 155
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=80.99 E-value=1.2 Score=44.18 Aligned_cols=29 Identities=3% Similarity=-0.194 Sum_probs=23.9
Q ss_pred cCCCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 223 NAEGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 223 ~~~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
......+|+|.|.+ |.|||||+.++-..+
T Consensus 75 ~~~~~~~I~i~G~~-G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 75 DSGNAHRVGITGVP-GVGKSTAIEALGMHL 103 (355)
T ss_dssp GCCCSEEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred hcCCceEEEEECCC-CCCHHHHHHHHHHHH
Confidence 34567899999999 999999998886544
No 156
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=80.88 E-value=1 Score=42.15 Aligned_cols=26 Identities=0% Similarity=-0.314 Sum_probs=21.7
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...+|.+.|+. |.||||+|+.+-..+
T Consensus 31 ~~~~i~l~G~~-GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQS-GAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCG-GGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHhc
Confidence 34678899999 999999999987654
No 157
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=80.86 E-value=0.73 Score=41.35 Aligned_cols=22 Identities=0% Similarity=-0.487 Sum_probs=19.2
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.+|+|.|+. |-||||+++.+-.
T Consensus 3 ~~i~l~G~~-GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGI-GSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECST-TSCHHHHHHHHHT
T ss_pred cEEEEECCC-CCCHHHHHHHHHH
Confidence 468999999 9999999998844
No 158
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=80.63 E-value=0.77 Score=42.07 Aligned_cols=26 Identities=15% Similarity=-0.244 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
++|.+++..||+||||++-++-..+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la 28 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALG 28 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 57888888789999999988765543
No 159
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=80.55 E-value=1.3 Score=38.76 Aligned_cols=25 Identities=12% Similarity=-0.331 Sum_probs=20.6
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|.. |+|||||+..+.+.
T Consensus 47 ~~~~i~vvG~~-g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQ-NSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCT-TSSHHHHHHHHHHS
T ss_pred CCCEEEEECCC-CCCHHHHHHHHhcC
Confidence 44567899999 99999999988654
No 160
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=80.44 E-value=1.6 Score=39.79 Aligned_cols=40 Identities=10% Similarity=-0.004 Sum_probs=27.6
Q ss_pred hhHHHHHHHhhcCCCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 212 SLLDEVLSLLRNAEGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 212 ~~l~~v~~ll~~~~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.|+..+..++..-...+.+-++|-. |.||||+|.++.+.+
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPP-GtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPA-NTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCG-GGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCC-CCCHHHHHHHHHHHh
Confidence 3455555555432223457799999 999999999887755
No 161
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=80.38 E-value=5.9 Score=38.21 Aligned_cols=135 Identities=13% Similarity=-0.027 Sum_probs=71.2
Q ss_pred HHHhhcCCCceeeeeeeccCccchhHHHHHHHhhhcccc--ccceEEEEeee---ccHHHHHHHHhhhhccccccccccc
Q 011431 218 LSLLRNAEGYRSYRCWLLCPLFSELRVLTNDVHQLMDNY--ENSDVTLAKFE---GEVKKLDQRLLRFLESVDKHVASYD 292 (486)
Q Consensus 218 ~~ll~~~~~~~vi~I~GmGgGvGKTTLa~~vy~~~~~~F--~~~~~~~v~~~---~~l~~lqk~ll~~L~~~d~~~~~~~ 292 (486)
...+...+ ...+=++|-. |.||||+|..+-+... .+ ...++....-. ..+..++ .+...+..
T Consensus 10 ~~~i~~~~-~~~~Lf~Gp~-G~GKtt~a~~la~~~~-~~~~~~~d~~~l~~~~~~~~id~ir-~li~~~~~--------- 76 (305)
T 2gno_A 10 KRIIEKSE-GISILINGED-LSYPREVSLELPEYVE-KFPPKASDVLEIDPEGENIGIDDIR-TIKDFLNY--------- 76 (305)
T ss_dssp HHHHHTCS-SEEEEEECSS-SSHHHHHHHHHHHHHH-TSCCCTTTEEEECCSSSCBCHHHHH-HHHHHHTS---------
T ss_pred HHHHHCCC-CcEEEEECCC-CCCHHHHHHHHHHhCc-hhhccCCCEEEEcCCcCCCCHHHHH-HHHHHHhh---------
Confidence 33344333 5566689999 9999999998865421 11 11122222211 2222222 12222210
Q ss_pred ccccccccccccccCcceeeceecccC--HHHHHHHhcCCCCCCCCCEEEeeCCcc-ccccccccCCCceEecCCCCCch
Q 011431 293 RYGSASFEQPRPQTTSAAHPYVEDVID--DAYMEDITDDSSPSLNLSRINSTSRFE-QLWPETISATDTCTEDVTVDNSP 369 (486)
Q Consensus 293 ~~g~~s~l~~~L~~tKr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIIiTTR~~-~V~~~~~~~~~~~y~v~~L~~~e 369 (486)
. .... ++.++++|++.. ....+.++...-+..+.+++|++|.+. .+... .... ++++++|++++
T Consensus 77 --~-------p~~~-~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~t--I~SR-~~~f~~l~~~~ 143 (305)
T 2gno_A 77 --S-------PELY-TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPT--IKSR-VFRVVVNVPKE 143 (305)
T ss_dssp --C-------CSSS-SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHH--HHTT-SEEEECCCCHH
T ss_pred --c-------cccC-CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHH--HHce-eEeCCCCCHHH
Confidence 0 1112 467788999874 344444442110112467777766443 45422 1223 89999999999
Q ss_pred hhhhhcccC
Q 011431 370 SLNLSSCNS 378 (486)
Q Consensus 370 s~~LF~~~a 378 (486)
..+.+...+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988887654
No 162
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=80.35 E-value=0.82 Score=41.38 Aligned_cols=26 Identities=4% Similarity=-0.438 Sum_probs=22.1
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
-.+++|.|.. |.|||||++.+.....
T Consensus 8 g~~i~l~Gps-GsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPS-GVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCT-TSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcC-CCCHHHHHHHHHhhCC
Confidence 3578899999 9999999999977653
No 163
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=80.31 E-value=1.4 Score=45.04 Aligned_cols=27 Identities=7% Similarity=-0.367 Sum_probs=21.8
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..++|.++|.| |.||||++-++-..+.
T Consensus 99 ~~~vI~ivG~~-GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQ-GAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECST-TSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHHH
Confidence 46799999998 9999999887765443
No 164
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=80.25 E-value=0.73 Score=40.34 Aligned_cols=21 Identities=0% Similarity=-0.357 Sum_probs=18.3
Q ss_pred eeeeeeeccCccchhHHHHHHH
Q 011431 228 RSYRCWLLCPLFSELRVLTNDV 249 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy 249 (486)
.+++++|.. |-|||||++..+
T Consensus 10 ei~~l~G~n-GsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSS-GSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCT-TSCHHHHHHHHS
T ss_pred EEEEEECCC-CCCHHHHHHHHc
Confidence 578899999 999999999644
No 165
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=80.22 E-value=0.77 Score=41.29 Aligned_cols=24 Identities=8% Similarity=-0.178 Sum_probs=20.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
++++|+|.. |.|||||++.+....
T Consensus 5 ~~i~lvGps-GaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPS-GAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCT-TSSHHHHHHHHHHHH
T ss_pred CEEEEECCC-CCCHHHHHHHHHhhC
Confidence 578899999 999999999987643
No 166
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=80.18 E-value=0.94 Score=39.73 Aligned_cols=24 Identities=4% Similarity=-0.272 Sum_probs=20.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..|.+.|+. |.||||+++.+-+.+
T Consensus 5 ~~I~l~G~~-GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPP-GAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCT-TSCHHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHh
Confidence 467899999 999999999986654
No 167
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=80.15 E-value=0.97 Score=39.67 Aligned_cols=25 Identities=8% Similarity=-0.348 Sum_probs=21.1
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..+|.+.|+. |.||||+++.+-..+
T Consensus 6 ~~~I~l~G~~-GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGP-GSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEEST-TSSHHHHHHHHHHHH
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHh
Confidence 3578899999 999999999886654
No 168
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=80.03 E-value=0.92 Score=42.37 Aligned_cols=28 Identities=11% Similarity=-0.306 Sum_probs=22.7
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
....+|+|.|.. |.||||+|+.+-..+.
T Consensus 20 ~~~~iI~I~G~~-GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGT-ASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECST-TSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCC-CCCHHHHHHHHHHHhh
Confidence 356789999999 9999999998866543
No 169
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=79.79 E-value=0.86 Score=43.42 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=19.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.++|+|.|-| |+||||+|-++-..+
T Consensus 2 MkvIavs~KG-GvGKTT~a~nLA~~L 26 (289)
T 2afh_E 2 MRQCAIYGKG-GIGKSTTTQNLVAAL 26 (289)
T ss_dssp CEEEEEEECT-TSSHHHHHHHHHHHH
T ss_pred ceEEEEeCCC-cCcHHHHHHHHHHHH
Confidence 4678888877 999999998775444
No 170
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=79.76 E-value=1.1 Score=45.83 Aligned_cols=25 Identities=0% Similarity=-0.296 Sum_probs=21.1
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.++|.++|.+ |.||||++.++-...
T Consensus 99 ~~vI~ivG~~-GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQ-GSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCS-SSSTTHHHHHHHHHH
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHH
Confidence 4689999998 999999998876644
No 171
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.73 E-value=0.98 Score=42.41 Aligned_cols=24 Identities=0% Similarity=-0.258 Sum_probs=20.4
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
++|.|.|+. |.||||||+.+-...
T Consensus 2 ~li~I~G~~-GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPT-CSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred eEEEEECCC-CcCHHHHHHHHHhcC
Confidence 367899999 999999999987654
No 172
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=79.69 E-value=0.93 Score=40.51 Aligned_cols=25 Identities=4% Similarity=-0.444 Sum_probs=21.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.+|.|.|+. |.||||+++.+-..+.
T Consensus 5 ~~I~i~G~~-GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGID-GSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCC-CCCHHHHHHHHHHHHh
Confidence 467899999 9999999999977654
No 173
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=79.52 E-value=0.83 Score=40.38 Aligned_cols=24 Identities=0% Similarity=-0.454 Sum_probs=20.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
...|.+.|+. |.||||+++.+-..
T Consensus 10 ~~~I~l~G~~-GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTP-GTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECST-TSSHHHHHHHHHHH
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHh
Confidence 3578899999 99999999988665
No 174
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=79.44 E-value=0.9 Score=42.20 Aligned_cols=25 Identities=4% Similarity=-0.343 Sum_probs=21.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..+|+|+|.. |.|||||++.+...+
T Consensus 27 ~~~i~l~G~~-GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPP-GSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHh
Confidence 4689999999 999999999997544
No 175
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=79.36 E-value=1.5 Score=42.23 Aligned_cols=25 Identities=8% Similarity=-0.123 Sum_probs=21.4
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..+-|+|.. |.||||||+.+.+...
T Consensus 39 ~~vll~G~~-GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPP-GLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCT-TCCCHHHHHHHHHHHT
T ss_pred CcEEEECCC-CCCHHHHHHHHHHHhC
Confidence 456689999 9999999999988764
No 176
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=79.03 E-value=0.87 Score=44.34 Aligned_cols=28 Identities=4% Similarity=-0.397 Sum_probs=23.3
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..-.++||.|-. |.|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~s-GsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSV-AVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCT-TSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCC-CchHHHHHHHHHhhcc
Confidence 345789999999 9999999999876543
No 177
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.81 E-value=0.99 Score=44.19 Aligned_cols=28 Identities=4% Similarity=-0.306 Sum_probs=23.3
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhcc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLMD 254 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~~ 254 (486)
....+.++|-. |.||||||+.+.+.+..
T Consensus 50 ~~~~~ll~Gp~-G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 50 VLDHVLLAGPP-GLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCCCEEEESST-TSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEECCC-CCcHHHHHHHHHHHhCC
Confidence 34678899999 99999999999887643
No 178
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=78.81 E-value=1 Score=39.85 Aligned_cols=26 Identities=8% Similarity=-0.118 Sum_probs=22.0
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..+++|.|.. |.|||||+..+...+.
T Consensus 6 ~~~i~i~G~s-GsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWS-GTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCT-TSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCC-CCCHHHHHHHHHHhcc
Confidence 5678899998 9999999999877643
No 179
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=78.78 E-value=1 Score=42.94 Aligned_cols=24 Identities=8% Similarity=-0.200 Sum_probs=20.9
Q ss_pred CCceeeeeeeccCccchhHHHHHHH
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDV 249 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy 249 (486)
....+|+|.|+. |.||||+|+.+-
T Consensus 73 ~~~~iI~I~G~~-GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGIS-GSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECT-TSCHHHHHHHHH
T ss_pred CCCEEEEEECCC-CCCHHHHHHHHH
Confidence 346789999999 999999999885
No 180
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=78.53 E-value=1.1 Score=40.70 Aligned_cols=24 Identities=4% Similarity=-0.385 Sum_probs=20.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..|.+.|+. |.||||+++.+-..+
T Consensus 5 ~~I~l~G~~-GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPP-GAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHc
Confidence 567899999 999999999986654
No 181
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=78.43 E-value=0.83 Score=42.76 Aligned_cols=28 Identities=11% Similarity=-0.216 Sum_probs=22.1
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..++|++++.-||+||||++.++-..+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la 32 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLA 32 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 4578999977779999999988755443
No 182
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=78.43 E-value=0.99 Score=43.78 Aligned_cols=27 Identities=4% Similarity=-0.257 Sum_probs=22.6
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.-.+++|+|.+ |.|||||++.+.....
T Consensus 101 ~g~vi~lvG~n-GsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVN-GVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECST-TSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCcHHHHHHHHHHHHH
Confidence 35699999999 9999999999876543
No 183
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=78.34 E-value=0.96 Score=42.13 Aligned_cols=27 Identities=4% Similarity=-0.370 Sum_probs=21.1
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
...++.+.|-| |+|||||+.++-..+.
T Consensus 13 ~~~i~~~~Gkg-GvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTA-GSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECST-TSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 34567788999 9999999998865443
No 184
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=78.30 E-value=1.1 Score=39.95 Aligned_cols=26 Identities=4% Similarity=-0.363 Sum_probs=21.4
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...+|.+.|+. |.||||+|+.+-..+
T Consensus 19 ~~~~I~l~G~~-GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPP-GAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHh
Confidence 34578899999 999999999886654
No 185
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=78.24 E-value=1.1 Score=37.70 Aligned_cols=23 Identities=0% Similarity=-0.213 Sum_probs=19.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
+.|.++|.. |+|||||+..+.+.
T Consensus 2 ~ki~v~G~~-~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRP-NVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHC
T ss_pred CEEEEECCC-CCCHHHHHHHHhCC
Confidence 356789999 99999999988754
No 186
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=78.24 E-value=1 Score=37.90 Aligned_cols=21 Identities=0% Similarity=-0.251 Sum_probs=18.1
Q ss_pred eeeeeccCccchhHHHHHHHhh
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~ 251 (486)
|.++|-+ |.|||||+..+.+.
T Consensus 6 i~v~G~~-~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAG-GVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEST-TSSHHHHHHHHHHS
T ss_pred EEEECCC-CCCHHHHHHHHHhC
Confidence 6789998 99999999988754
No 187
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=78.17 E-value=1.1 Score=40.24 Aligned_cols=25 Identities=8% Similarity=-0.296 Sum_probs=21.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.+|.|.|+. |.||||+++.+-+.+.
T Consensus 10 ~~I~l~G~~-GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVD-RAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEEST-TSSHHHHHHHHHHHHH
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHHH
Confidence 578899999 9999999999877654
No 188
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=78.14 E-value=1 Score=43.39 Aligned_cols=27 Identities=7% Similarity=0.017 Sum_probs=21.0
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...++|.++|=| |+||||+|-++-..+
T Consensus 39 ~~~~vI~v~~KG-GvGKTT~a~nLA~~L 65 (307)
T 3end_A 39 TGAKVFAVYGKG-GIGKSTTSSNLSAAF 65 (307)
T ss_dssp -CCEEEEEECST-TSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCC-CccHHHHHHHHHHHH
Confidence 467899999866 999999998775544
No 189
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=78.07 E-value=1.1 Score=41.95 Aligned_cols=25 Identities=4% Similarity=-0.339 Sum_probs=21.7
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
-.+|+|.|.. |-|||||++.+-.++
T Consensus 27 g~~I~I~G~~-GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPS-GAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCT-TSSHHHHHHHHHHHT
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHhc
Confidence 3589999999 999999999997654
No 190
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=78.07 E-value=1.1 Score=40.15 Aligned_cols=26 Identities=12% Similarity=-0.342 Sum_probs=21.7
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
-.+|.+.|+- |.||||+++.+-..+.
T Consensus 10 ~~~I~l~G~~-GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLD-RSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEEST-TSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCC-CCCHHHHHHHHHHHHH
Confidence 3578899999 9999999999876553
No 191
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=77.83 E-value=1.1 Score=39.60 Aligned_cols=24 Identities=4% Similarity=-0.245 Sum_probs=20.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
...|+++|-. |.|||||++.+...
T Consensus 29 ~~kv~lvG~~-g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDS-GVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECT-TSSHHHHHHHHHHS
T ss_pred ceEEEEECcC-CCCHHHHHHHHhcC
Confidence 4568899999 99999999988764
No 192
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.77 E-value=1.1 Score=42.28 Aligned_cols=25 Identities=16% Similarity=-0.185 Sum_probs=21.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..|.|.|+. |.||||+++.+-..+.
T Consensus 49 ~~i~l~G~~-GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMM-GSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECST-TSCHHHHHHHHHHHHT
T ss_pred CEEEEECCC-CCCHHHHHHHHHHhcC
Confidence 468899999 9999999999976553
No 193
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=77.76 E-value=1 Score=40.33 Aligned_cols=23 Identities=4% Similarity=-0.240 Sum_probs=20.1
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+++|+|.. |.|||||++.+....
T Consensus 3 ~i~i~G~n-G~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPP-GVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCC-SSCHHHHHHHHHHHH
T ss_pred EEEEECCC-CChHHHHHHHHHhhc
Confidence 57899999 999999999987654
No 194
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=77.57 E-value=1.1 Score=39.48 Aligned_cols=23 Identities=4% Similarity=-0.338 Sum_probs=19.9
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+|++.|.- |.||||+++.+.+.+
T Consensus 2 ~I~l~G~~-GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGID-GSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECST-TSSHHHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHHHHH
Confidence 57888998 999999999987765
No 195
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=77.54 E-value=1.1 Score=42.07 Aligned_cols=25 Identities=12% Similarity=-0.083 Sum_probs=19.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
++|+|.|=| |+||||++-++=..+.
T Consensus 2 ~vI~vs~KG-GvGKTT~a~nLA~~la 26 (269)
T 1cp2_A 2 RQVAIYGKG-GIGKSTTTQNLTSGLH 26 (269)
T ss_dssp EEEEEEECT-TSSHHHHHHHHHHHHH
T ss_pred cEEEEecCC-CCcHHHHHHHHHHHHH
Confidence 577888866 9999999987755443
No 196
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=77.49 E-value=1.1 Score=40.07 Aligned_cols=28 Identities=7% Similarity=-0.109 Sum_probs=21.5
Q ss_pred eeeeeeccCccchhHHHHHHHhhhccccc
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQLMDNYE 257 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~~~~F~ 257 (486)
.|-|.|.. |.|||||++.+..+....|.
T Consensus 3 pIVi~GPS-G~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 3 PIVISGPS-GTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CEEEECCT-TSSHHHHHHHHHHHCTTTEE
T ss_pred EEEEECCC-CCCHHHHHHHHHHhCCCCeE
Confidence 35588888 99999999999776544443
No 197
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=77.44 E-value=1 Score=40.60 Aligned_cols=24 Identities=8% Similarity=-0.146 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-. |-|||||++.+....
T Consensus 21 ei~~l~Gpn-GsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPS-AVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECST-TSSHHHHHHHHHHHS
T ss_pred CEEEEECCC-CCCHHHHHHHHHhhC
Confidence 578999999 999999999987644
No 198
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.37 E-value=1.9 Score=42.32 Aligned_cols=26 Identities=4% Similarity=-0.270 Sum_probs=22.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.-.+++++|.. |.||||+++.+...+
T Consensus 128 ~g~vi~lvG~n-GaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFN-GSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHH
Confidence 45799999999 999999999887644
No 199
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=77.36 E-value=1.2 Score=40.23 Aligned_cols=25 Identities=16% Similarity=-0.113 Sum_probs=21.4
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
-.+|.+.|+. |.||||+++.+...+
T Consensus 25 ~~~i~~~G~~-GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLS-ASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECST-TSSHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHHh
Confidence 3578899999 999999999987665
No 200
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=77.35 E-value=2.2 Score=41.39 Aligned_cols=28 Identities=4% Similarity=-0.212 Sum_probs=22.3
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhccc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLMDN 255 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~~~ 255 (486)
...+-|+|.. |.||||||+.+.+.....
T Consensus 55 ~~~vll~G~~-GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 55 LDHILFSGPA-GLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CCCEEEECST-TSSHHHHHHHHHHHTTCC
T ss_pred CCeEEEECcC-CCCHHHHHHHHHHHhCCC
Confidence 3456689999 999999999998775443
No 201
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=77.31 E-value=1.1 Score=39.29 Aligned_cols=22 Identities=0% Similarity=-0.238 Sum_probs=18.7
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.|.++|.+ |+|||||+..+.+.
T Consensus 23 ki~vvG~~-~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAG-GVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECST-TSSHHHHHHHHHHS
T ss_pred EEEEECcC-CCCHHHHHHHHHcC
Confidence 46689998 99999999988754
No 202
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=77.24 E-value=1.1 Score=42.21 Aligned_cols=25 Identities=12% Similarity=-0.269 Sum_probs=21.0
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..+|-+.|+. |.||||+|+.+...+
T Consensus 4 ~~lIvl~G~p-GSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLP-GVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCC-CCCHHHHHHHHHHHH
Confidence 3567899999 999999999987653
No 203
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.06 E-value=1.2 Score=41.45 Aligned_cols=23 Identities=0% Similarity=-0.372 Sum_probs=20.3
Q ss_pred eeeeeccCccchhHHHHHHHhhhc
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
+.++|-. |.|||||++.+.+...
T Consensus 52 ~ll~G~~-G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPP-GVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCT-TSSHHHHHHHHHHHTT
T ss_pred EEEECCC-CCCHHHHHHHHHHHhC
Confidence 7799999 9999999999987654
No 204
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=77.01 E-value=1 Score=41.23 Aligned_cols=24 Identities=0% Similarity=-0.153 Sum_probs=20.8
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-. |.|||||++.+....
T Consensus 24 ~~~~lvGps-GsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPS-GVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECST-TSSHHHHHHHHHHHS
T ss_pred CEEEEECCC-CCCHHHHHHHHHhhC
Confidence 578999999 999999999987644
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=76.93 E-value=1.3 Score=38.73 Aligned_cols=24 Identities=13% Similarity=-0.248 Sum_probs=20.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|++.|+- |.||||+++.+...+
T Consensus 6 ~~i~l~G~~-GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLS-GAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHH
Confidence 567899999 999999999987654
No 206
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=76.93 E-value=1.2 Score=38.24 Aligned_cols=22 Identities=0% Similarity=-0.306 Sum_probs=19.1
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
..|+++|.. |+|||||++.+.+
T Consensus 4 ~~v~lvG~~-gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNP-NVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECST-TSSHHHHHHHHHC
T ss_pred cEEEEECCC-CCCHHHHHHHHhC
Confidence 357899999 9999999998865
No 207
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=76.91 E-value=2.2 Score=41.61 Aligned_cols=28 Identities=4% Similarity=-0.395 Sum_probs=23.0
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
....+|||.|-. |.|||||++.+...+.
T Consensus 90 ~~p~iigI~Gps-GSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSV-AVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCT-TSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCC-CCCHHHHHHHHHHHhc
Confidence 456689999999 9999999999865543
No 208
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=76.67 E-value=1.3 Score=40.03 Aligned_cols=27 Identities=7% Similarity=-0.129 Sum_probs=22.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.-+++.|+|.. |.|||||++.+.....
T Consensus 18 ~g~~ivl~GPS-GaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGAS-GVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCT-TSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcC-CCCHHHHHHHHHhhCC
Confidence 34678899999 9999999999876543
No 209
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=76.57 E-value=1.3 Score=38.70 Aligned_cols=27 Identities=7% Similarity=-0.150 Sum_probs=21.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDN 255 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~ 255 (486)
.-|.++|.. |+|||||++.+.+.....
T Consensus 15 ~ki~vvG~~-~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 15 FKIVYYGPG-LSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEEECST-TSSHHHHHHHHHHTSCGG
T ss_pred cEEEEECCC-CCCHHHHHHHHHhhcccc
Confidence 346799999 999999998887655444
No 210
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=76.54 E-value=1.3 Score=41.43 Aligned_cols=26 Identities=12% Similarity=-0.198 Sum_probs=20.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
++|.+++..||+||||++-++-..+.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la 28 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALA 28 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 57888887779999999988765443
No 211
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=76.47 E-value=1.3 Score=44.02 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=34.4
Q ss_pred cCccCcChHHHHHHHHhcC-C----CeEEEeCCcCCCCCchHHHHHHHhhccceEEEeecccccChh
Q 011431 30 GEDIRENFGSYLFAALFRE-S----VKTFRDEQIRRGDEIMPALLQAIEESKISLVIFSKRFAFSRW 91 (486)
Q Consensus 30 ~~D~~~~f~~~L~~~L~~~-g----i~~~~d~~~~~g~~i~~~i~~~I~~s~~~ivv~S~~y~~S~w 91 (486)
..| ..++..|...|.++ + +.+|.| .+.+.+.+++-++-|++++++|....|
T Consensus 28 d~d--~~Y~~~l~~y~~~~~~~~~~v~~ft~---------~e~~~~~~~~~~~dilli~e~~~~~~~ 83 (373)
T 3fkq_A 28 DKD--KEYLDRLTGVFNTKYADKLEVYSFTD---------EKNAIESVKEYRIDVLIAEEDFNIDKS 83 (373)
T ss_dssp CSC--HHHHHHHHHHHHHHTTTTEEEEEESC---------HHHHHHHHHHHTCSEEEEETTCCCCGG
T ss_pred eCC--HHHHHHHHHHHhhccCCceEEEEECC---------HHHHHHHHhcCCCCEEEEcchhhhhhh
Confidence 455 46788888888754 2 334444 235566677778889999999876544
No 212
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=76.45 E-value=1.2 Score=42.60 Aligned_cols=26 Identities=12% Similarity=-0.148 Sum_probs=20.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
++|.|++.-||+||||++.++-..+.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La 30 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALL 30 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 57888877779999999988765443
No 213
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=76.44 E-value=1.2 Score=40.00 Aligned_cols=26 Identities=4% Similarity=-0.381 Sum_probs=21.8
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-.+|||.|+- |-||||+++.+-..
T Consensus 10 ~~~~iIgltG~~-GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKI-GTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECST-TSSHHHHHHHHHHH
T ss_pred ccceEEEEECCC-CCCHHHHHHHHHHh
Confidence 355789999999 99999999988554
No 214
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=76.36 E-value=1.2 Score=38.91 Aligned_cols=23 Identities=0% Similarity=-0.268 Sum_probs=19.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..|.++|.. |+|||||++.+.+.
T Consensus 8 ~~i~lvG~~-gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNP-NVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECST-TSSHHHHHHHHHTT
T ss_pred CEEEEECCC-CCCHHHHHHHHhCC
Confidence 467899999 99999999988763
No 215
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=76.28 E-value=1.1 Score=41.53 Aligned_cols=25 Identities=8% Similarity=-0.319 Sum_probs=21.2
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
-.+|||.|-. |-|||||++.+...+
T Consensus 25 g~iigI~G~~-GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGT-ASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECST-TSSHHHHHHHHHHHH
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHHh
Confidence 3689999999 999999999886643
No 216
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.17 E-value=1.3 Score=41.30 Aligned_cols=23 Identities=0% Similarity=-0.441 Sum_probs=19.9
Q ss_pred eeeeeccCccchhHHHHHHHhhhc
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
+-++|.. |.||||||+.+.+...
T Consensus 48 vll~G~~-GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPP-GTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCT-TSCHHHHHHHHHHHHT
T ss_pred EEEECcC-CCCHHHHHHHHHHHcC
Confidence 5689999 9999999999987653
No 217
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=76.16 E-value=1.4 Score=40.29 Aligned_cols=24 Identities=4% Similarity=-0.349 Sum_probs=20.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..|.+.|+. |.||||+++.+-..+
T Consensus 8 ~~I~l~G~~-GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAP-GSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHHS
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHc
Confidence 568899999 999999999886654
No 218
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=76.02 E-value=1.2 Score=37.67 Aligned_cols=22 Identities=0% Similarity=-0.215 Sum_probs=18.8
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.|.++|.. |+|||||+..+.+.
T Consensus 7 ~i~v~G~~-~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNG-AVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECST-TSSHHHHHHHHHHC
T ss_pred EEEEECcC-CCCHHHHHHHHHcC
Confidence 46789999 99999999988764
No 219
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=76.01 E-value=1.2 Score=41.72 Aligned_cols=27 Identities=4% Similarity=-0.369 Sum_probs=21.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..++|.+.+--||+||||+|-++-..+
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~l 43 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHY 43 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 456888887777999999998775544
No 220
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=76.00 E-value=1.1 Score=39.57 Aligned_cols=24 Identities=8% Similarity=-0.180 Sum_probs=20.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-. |.|||||++.+....
T Consensus 3 ~~v~IvG~S-GsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTS-DSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESC-HHHHHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHh
Confidence 578999988 999999999987654
No 221
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=75.98 E-value=1.3 Score=39.33 Aligned_cols=24 Identities=8% Similarity=-0.240 Sum_probs=20.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|.+.|+- |.||||+++.+-+.+
T Consensus 5 ~~I~l~G~~-GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLD-KSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHTS
T ss_pred cEEEEEcCC-CCCHHHHHHHHHHHH
Confidence 468899999 999999999987665
No 222
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=75.94 E-value=1.2 Score=39.53 Aligned_cols=23 Identities=4% Similarity=-0.256 Sum_probs=19.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..|+++|-. |.|||||++.+...
T Consensus 6 ~kv~lvG~~-g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDS-GVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESST-TSSHHHHHHHHHHS
T ss_pred EEEEEECcC-CCCHHHHHHHHhcC
Confidence 457899999 99999999988764
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=75.79 E-value=2.2 Score=43.57 Aligned_cols=26 Identities=0% Similarity=-0.525 Sum_probs=21.7
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...+|.++|.+ |.||||++..+-..+
T Consensus 96 ~~~vI~lvG~~-GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQ-GSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCT-TSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHH
Confidence 36789999999 999999998876544
No 224
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=75.67 E-value=2.1 Score=44.53 Aligned_cols=26 Identities=4% Similarity=-0.332 Sum_probs=20.7
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..++|.++|.+ |.||||++.++-..+
T Consensus 100 ~~~vI~ivG~~-GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQ-GSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECST-TSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHH
Confidence 46789999999 999999998886544
No 225
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=75.57 E-value=1.5 Score=39.09 Aligned_cols=23 Identities=9% Similarity=-0.260 Sum_probs=20.2
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+|+|.|.. |.||||+++.+-..+
T Consensus 4 ~i~i~G~~-GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPS-ASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECST-TSSHHHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHHHhc
Confidence 78899999 999999999986654
No 226
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=75.50 E-value=1.3 Score=40.08 Aligned_cols=22 Identities=5% Similarity=-0.446 Sum_probs=19.5
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.+|+|.|+- |.||||+++.+-.
T Consensus 5 ~~I~i~G~~-GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGI-GSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCT-TSCHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHH
Confidence 578999999 9999999998844
No 227
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=75.16 E-value=1.3 Score=42.77 Aligned_cols=28 Identities=4% Similarity=-0.396 Sum_probs=23.1
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
....+|||.|.. |-|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~-GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSV-AVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECT-TSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCC-CCCHHHHHHHHHHHHh
Confidence 345789999999 9999999999876543
No 228
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=75.15 E-value=1.4 Score=37.28 Aligned_cols=23 Identities=0% Similarity=-0.351 Sum_probs=19.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-|.++|.. |.|||||+..+.+.
T Consensus 5 ~~i~v~G~~-~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSG-GVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECST-TSSHHHHHHHHHHS
T ss_pred EEEEEECCC-CCCHHHHHHHHHhC
Confidence 346789999 99999999988753
No 229
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=75.14 E-value=1.7 Score=41.54 Aligned_cols=25 Identities=0% Similarity=-0.305 Sum_probs=20.8
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..+|-+.|+. |.||||+++.+....
T Consensus 33 ~~livl~G~s-GsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQP-GSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCT-TSCTHHHHHHHHHHT
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHh
Confidence 4567789999 999999999997654
No 230
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=75.12 E-value=2.4 Score=35.71 Aligned_cols=22 Identities=0% Similarity=-0.449 Sum_probs=18.9
Q ss_pred eeeeeccCccchhHHHHHHHhhh
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
|=|+|-. |.|||++|+.+++..
T Consensus 27 vll~G~~-GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 27 VWLYGAP-GTGRMTGARYLHQFG 48 (145)
T ss_dssp EEEESST-TSSHHHHHHHHHHSS
T ss_pred EEEECCC-CCCHHHHHHHHHHhC
Confidence 3489999 999999999998754
No 231
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=74.90 E-value=1.1 Score=43.60 Aligned_cols=28 Identities=4% Similarity=-0.156 Sum_probs=18.8
Q ss_pred CCCceeeeeeeccCccchhHHHHHHHhh
Q 011431 224 AEGYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 224 ~~~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..+.++|.+++--||+||||+|-++=..
T Consensus 10 ~~gm~~i~v~sgKGGvGKTTvA~~LA~~ 37 (324)
T 3zq6_A 10 NKGKTTFVFIGGKGGVGKTTISAATALW 37 (324)
T ss_dssp BTTBCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHH
Confidence 3454566666544599999999776443
No 232
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=74.81 E-value=1.5 Score=39.72 Aligned_cols=25 Identities=4% Similarity=-0.194 Sum_probs=20.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
++|.|.+-.||+||||++-++-..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~l 26 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAA 26 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5688888877999999998776544
No 233
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=74.70 E-value=23 Score=33.44 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=31.0
Q ss_pred hHHHHHHHhhccceEEEeecccccChhhHHHHHHHHHHhcCCCEEEEEEeeecC
Q 011431 65 MPALLQAIEESKISLVIFSKRFAFSRWCLEELVKIIECNKLYQTVIPVFYKVLP 118 (486)
Q Consensus 65 ~~~i~~~I~~s~~~ivv~S~~y~~S~wcl~El~~i~~~~~~~~~v~Pify~v~~ 118 (486)
...+.+.++++.+.|.|+.-+-..+..|. ++...+ .+..++-|+-+.+.
T Consensus 14 ~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-~l~~~l----~~kp~ilVlNK~DL 62 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDARIPMSSRNP-MIEDIL----KNKPRIMLLNKADK 62 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEETTSTTTTSCH-HHHHHC----SSSCEEEEEECGGG
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCccCCH-HHHHHH----CCCCEEEEEECccc
Confidence 35778889999999999987776666662 333333 23334445545443
No 234
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=74.66 E-value=1.4 Score=37.25 Aligned_cols=22 Identities=5% Similarity=-0.242 Sum_probs=18.6
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
-|.++|.. |+|||||+..+.+.
T Consensus 5 ki~v~G~~-~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSG-GVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECST-TSSHHHHHHHHHHC
T ss_pred EEEEECCC-CCCHHHHHHHHHcC
Confidence 36789999 99999999988763
No 235
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=74.65 E-value=1.5 Score=40.30 Aligned_cols=25 Identities=4% Similarity=-0.161 Sum_probs=21.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.+++|+|-. |.|||||++.+.....
T Consensus 17 ~ii~l~Gps-GsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPS-GAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCT-TSCHHHHHHHHHHHSC
T ss_pred cEEEEECCC-CCCHHHHHHHHhccCC
Confidence 578899999 9999999999977553
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.57 E-value=1.5 Score=42.52 Aligned_cols=27 Identities=0% Similarity=-0.346 Sum_probs=22.4
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
...++.++|.+ |.||||++..+-..+.
T Consensus 103 ~~~vi~ivG~~-GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVN-GTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCT-TSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCC-CChHHHHHHHHHHHHH
Confidence 45789999998 9999999998876543
No 237
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=74.56 E-value=2.8 Score=42.84 Aligned_cols=27 Identities=0% Similarity=-0.290 Sum_probs=21.9
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
...+|.++|.+ |.||||++.++-..+.
T Consensus 99 ~p~vIlivG~~-G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQ-GSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCT-TSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcC-CCCHHHHHHHHHHHHH
Confidence 36799999998 9999999887765443
No 238
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=74.53 E-value=1.4 Score=42.46 Aligned_cols=27 Identities=4% Similarity=-0.309 Sum_probs=22.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.-.+++++|.+ |.||||++..+...+.
T Consensus 97 ~~~~i~i~g~~-G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQ-GSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCT-TTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHHH
Confidence 34689999998 9999999998876543
No 239
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=74.52 E-value=1.7 Score=38.05 Aligned_cols=25 Identities=4% Similarity=-0.057 Sum_probs=20.9
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
+...|.++|.. |+|||||+..+.+.
T Consensus 22 ~~~~i~v~G~~-~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRS-NVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBT-TSSHHHHHHHHHTC
T ss_pred CCCEEEEECCC-CCCHHHHHHHHhCC
Confidence 45667899999 99999999988654
No 240
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=74.42 E-value=1.5 Score=41.67 Aligned_cols=25 Identities=0% Similarity=-0.269 Sum_probs=21.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
+.+-++|.. |.||||||+.+.+...
T Consensus 55 ~~vll~Gp~-GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 55 KGLLLFGPP-GNGKTLLARAVATECS 79 (297)
T ss_dssp SEEEEESSS-SSCHHHHHHHHHHHTT
T ss_pred CeEEEECcC-CCCHHHHHHHHHHHhC
Confidence 456689999 9999999999988764
No 241
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=74.31 E-value=1.7 Score=37.66 Aligned_cols=24 Identities=0% Similarity=-0.355 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.++++.|-- |-|||||++.+...+
T Consensus 34 e~v~L~G~n-GaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDL-GAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECST-TSSHHHHHHHHHHHT
T ss_pred CEEEEECCC-CCCHHHHHHHHHHhC
Confidence 578899999 999999999997654
No 242
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=74.12 E-value=1.6 Score=39.38 Aligned_cols=23 Identities=4% Similarity=-0.263 Sum_probs=18.9
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.|.|.|+. |.||||+|+.+-...
T Consensus 2 ~I~l~G~~-GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLP-GAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECST-TSSHHHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHHHHh
Confidence 46788998 999999999886543
No 243
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=74.08 E-value=1.1 Score=40.99 Aligned_cols=23 Identities=9% Similarity=-0.220 Sum_probs=15.2
Q ss_pred eeeeeeeccCccchhHHHHHHH-hh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDV-HQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy-~~ 251 (486)
.+++|.|.- |.|||||++.+. ..
T Consensus 28 ~ii~l~Gp~-GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPS-GCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSC-C----CHHHHHHC--
T ss_pred CEEEEECCC-CCCHHHHHHHHHhcC
Confidence 578999999 999999999987 44
No 244
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=74.04 E-value=1.3 Score=38.65 Aligned_cols=21 Identities=5% Similarity=-0.244 Sum_probs=18.0
Q ss_pred eeeeeeccCccchhHHHHHHHh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.|.++|-. |+|||||++.+.+
T Consensus 4 kv~ivG~~-gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNT-GSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCT-TSSHHHHHHHHTC
T ss_pred EEEEECCC-CCCHHHHHHHHhc
Confidence 36799999 9999999988765
No 245
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=73.92 E-value=1.6 Score=39.40 Aligned_cols=23 Identities=9% Similarity=-0.301 Sum_probs=18.9
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.|.|.|+. |.||||+|+.+-...
T Consensus 2 ~I~l~G~~-GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLP-GAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECST-TSSHHHHHHHHHHHS
T ss_pred EEEEECCC-CCCHHHHHHHHHHHh
Confidence 46788998 999999999886543
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=73.72 E-value=1.6 Score=41.25 Aligned_cols=23 Identities=0% Similarity=-0.372 Sum_probs=20.4
Q ss_pred eeeeeccCccchhHHHHHHHhhhc
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
+.|+|-. |.|||||++.+.+...
T Consensus 76 vll~Gp~-GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPP-GVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCT-TSSHHHHHHHHHHHTT
T ss_pred EEEECCC-cChHHHHHHHHHHHcC
Confidence 7799999 9999999999987664
No 247
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=73.71 E-value=1.6 Score=37.49 Aligned_cols=25 Identities=0% Similarity=-0.292 Sum_probs=20.5
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
...-|.++|.. |+|||||+..+.+.
T Consensus 8 ~~~~i~v~G~~-~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGG-GVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECT-TSSHHHHHHHHHHS
T ss_pred CceEEEEECCC-CCCHHHHHHHHHhC
Confidence 34557799999 99999999988764
No 248
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=73.60 E-value=1.5 Score=40.31 Aligned_cols=21 Identities=0% Similarity=-0.377 Sum_probs=19.0
Q ss_pred eeeeeeeccCccchhHHHHHHH
Q 011431 228 RSYRCWLLCPLFSELRVLTNDV 249 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy 249 (486)
.+++|+|-. |.|||||++.+.
T Consensus 31 ~~~~l~Gpn-GsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGT-GTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCT-TSSHHHHHHHHH
T ss_pred cEEEEEeCC-CCCHHHHHHHHH
Confidence 578899999 999999999886
No 249
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=73.57 E-value=1.5 Score=37.15 Aligned_cols=21 Identities=5% Similarity=-0.137 Sum_probs=18.1
Q ss_pred eeeeeeccCccchhHHHHHHHh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
-|.++|.. |+|||||+..+.+
T Consensus 5 ~i~v~G~~-~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAG-GVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCT-TSSHHHHHHHHHT
T ss_pred EEEEECCC-CCCHHHHHHHHHc
Confidence 35689999 9999999998875
No 250
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=73.41 E-value=1.6 Score=38.65 Aligned_cols=24 Identities=8% Similarity=-0.175 Sum_probs=19.2
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.+ |+|||||++.+.++
T Consensus 20 ~~ki~~vG~~-~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLR-RSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEEST-TSSHHHHHHHHHSC
T ss_pred ceEEEEECCC-CCCHHHHHHHHHhc
Confidence 3446699999 99999999877664
No 251
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=73.36 E-value=1.6 Score=37.10 Aligned_cols=23 Identities=0% Similarity=-0.257 Sum_probs=19.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 7 ~~i~v~G~~-~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEG-CVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCT-TSCHHHHHHHHHHC
T ss_pred eEEEEECcC-CCCHHHHHHHHHcC
Confidence 346789999 99999999888653
No 252
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=73.16 E-value=1.7 Score=39.36 Aligned_cols=23 Identities=0% Similarity=-0.283 Sum_probs=20.4
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-. |.|||||++.+...
T Consensus 26 ~~~~l~G~n-GsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEF-GSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEEST-TSSHHHHHHHHHHH
T ss_pred cEEEEECCC-CCCHHHHHHHHHHH
Confidence 588899999 99999999999753
No 253
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=73.08 E-value=1.4 Score=42.33 Aligned_cols=26 Identities=4% Similarity=-0.382 Sum_probs=18.5
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...+|+|-|.. |.||||+++.+-+.+
T Consensus 4 ~~~iIgItG~s-GSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSS-GAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC----CCTHHHHHHHHH
T ss_pred CceEEEEECCC-CCCHHHHHHHHHHHH
Confidence 45689999998 999999999886543
No 254
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=73.01 E-value=1.5 Score=37.46 Aligned_cols=23 Identities=0% Similarity=-0.405 Sum_probs=18.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 5 ~ki~i~G~~-~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDP-GVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHCC
T ss_pred EEEEEECCC-CccHHHHHHHHhcC
Confidence 346799999 99999999887653
No 255
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=72.93 E-value=1.7 Score=36.92 Aligned_cols=22 Identities=5% Similarity=-0.245 Sum_probs=18.7
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
-|.++|.. |+|||||++.+.+.
T Consensus 8 ~i~v~G~~-~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDT-GVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCT-TSSHHHHHHHHHHS
T ss_pred EEEEECcC-CCCHHHHHHHHHcC
Confidence 46789999 99999999988764
No 256
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=72.89 E-value=1.7 Score=36.85 Aligned_cols=21 Identities=5% Similarity=-0.146 Sum_probs=17.9
Q ss_pred eeeeeccCccchhHHHHHHHhh
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~ 251 (486)
|.++|.. |+|||||+..+.+.
T Consensus 6 i~v~G~~-~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEA-AVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECST-TSSHHHHHHHHHHS
T ss_pred EEEECCC-CCCHHHHHHHHhcC
Confidence 5688998 99999999888753
No 257
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=72.86 E-value=1.8 Score=36.77 Aligned_cols=21 Identities=0% Similarity=-0.442 Sum_probs=17.9
Q ss_pred eeeeeeccCccchhHHHHHHHh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
-|.++|.. |+|||||+..+.+
T Consensus 4 ki~ivG~~-~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGES-GVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECST-TSSHHHHHHHHHC
T ss_pred EEEEECCC-CCCHHHHHHHHHh
Confidence 46799999 9999999988753
No 258
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=72.86 E-value=1.7 Score=37.89 Aligned_cols=23 Identities=4% Similarity=-0.257 Sum_probs=19.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-|.++|.. |+|||||+..+.+.
T Consensus 8 ~ki~v~G~~-~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDS-QCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEST-TSSHHHHHHHHHHS
T ss_pred EEEEEECCC-CCCHHHHHHHHhcC
Confidence 346799999 99999999988653
No 259
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=72.82 E-value=1.7 Score=41.34 Aligned_cols=44 Identities=9% Similarity=-0.081 Sum_probs=29.7
Q ss_pred CCCEEEeeCCcccccccccc---CCCceEecCCCCCchhhhhhcccC
Q 011431 335 NLSRINSTSRFEQLWPETIS---ATDTCTEDVTVDNSPSLNLSSCNS 378 (486)
Q Consensus 335 ~GSrIIiTTR~~~V~~~~~~---~~~~~y~v~~L~~~es~~LF~~~a 378 (486)
...-++.+|..-+++..... .-+..+++...+.++-.++|..+.
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 35567777877777632211 245677899999888888887655
No 260
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=72.81 E-value=1.8 Score=42.66 Aligned_cols=24 Identities=0% Similarity=-0.287 Sum_probs=21.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|+|.|.. |.||||||..+...+
T Consensus 8 ~lI~I~Gpt-gSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPT-ASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECST-TSSHHHHHHHHHHHT
T ss_pred ceEEEECCC-cCcHHHHHHHHHHHc
Confidence 478999999 999999999987765
No 261
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=72.79 E-value=1.8 Score=39.35 Aligned_cols=25 Identities=0% Similarity=-0.481 Sum_probs=20.8
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..|-+.|+. |.||||+++.+-..+.
T Consensus 6 ~~I~l~G~~-GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAP-ASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEEST-TSSHHHHHHHHHHHHC
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHhC
Confidence 467789999 9999999999876653
No 262
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=72.78 E-value=2.1 Score=37.29 Aligned_cols=25 Identities=4% Similarity=-0.233 Sum_probs=20.7
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|.. |+|||||+..+.+.
T Consensus 22 ~~~~i~v~G~~-~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRS-NVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBT-TSSHHHHHHHHHTS
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHcC
Confidence 34567899999 99999999988764
No 263
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=72.72 E-value=2.1 Score=37.32 Aligned_cols=26 Identities=8% Similarity=-0.162 Sum_probs=20.8
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.....|.++|.. |+|||||++.+.+.
T Consensus 14 ~~~~ki~ivG~~-~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLD-NAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEEST-TSSHHHHHHHHCCS
T ss_pred CCceEEEEECCC-CCCHHHHHHHHhcC
Confidence 344567899999 99999999887654
No 264
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=72.61 E-value=1.7 Score=37.23 Aligned_cols=25 Identities=8% Similarity=-0.237 Sum_probs=20.4
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|.. |+|||||+..+.+.
T Consensus 14 ~~~~i~v~G~~-~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDM-GVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECST-TSSHHHHHHHHHHS
T ss_pred cceEEEEECCC-CCCHHHHHHHHHcC
Confidence 34557799999 99999999988754
No 265
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=72.30 E-value=1.8 Score=37.55 Aligned_cols=22 Identities=5% Similarity=-0.318 Sum_probs=18.9
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.|.++|.. |+|||||++.+...
T Consensus 6 ki~ivG~~-g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRP-NAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEST-TSSHHHHHHHHHTS
T ss_pred EEEEECCC-CCCHHHHHHHHhCC
Confidence 46799999 99999999988754
No 266
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=72.27 E-value=1.7 Score=36.84 Aligned_cols=21 Identities=0% Similarity=-0.490 Sum_probs=17.5
Q ss_pred eeeeeeccCccchhHHHHHHHh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
-|.++|.. |+|||||++.+.+
T Consensus 4 ki~~vG~~-~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAP-GVGKSALARIFGG 24 (166)
T ss_dssp EEEEEEST-TSSHHHHHHHHCC
T ss_pred EEEEECCC-CCCHHHHHHHHcC
Confidence 35789999 9999999987753
No 267
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=72.04 E-value=2.9 Score=41.86 Aligned_cols=29 Identities=10% Similarity=-0.231 Sum_probs=22.3
Q ss_pred CCCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 224 AEGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 224 ~~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
....++|.+++.-||+||||++-++=..+
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~L 133 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAM 133 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHH
Confidence 34578999997777999999887774443
No 268
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=72.01 E-value=1.4 Score=41.13 Aligned_cols=25 Identities=0% Similarity=-0.451 Sum_probs=20.4
Q ss_pred eeeeeccCccchhHHHHHHHhhhccc
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQLMDN 255 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~~~~ 255 (486)
+-++|.. |.||||||+++.+.....
T Consensus 47 vll~G~~-GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 47 VLLVGPP-GTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp CCCBCSS-CSSHHHHHHHHHHHHTCC
T ss_pred EEEECCC-CCcHHHHHHHHHHHhCCC
Confidence 4488998 999999999998876433
No 269
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=71.90 E-value=1.8 Score=39.83 Aligned_cols=23 Identities=4% Similarity=-0.426 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 31 e~~~iiG~n-GsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGAS-GSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECT-TSCHHHHHHHHTTS
T ss_pred CEEEEECCC-CCCHHHHHHHHhcC
Confidence 478899999 99999999998653
No 270
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=71.82 E-value=2.2 Score=36.58 Aligned_cols=24 Identities=8% Similarity=-0.191 Sum_probs=20.1
Q ss_pred CceeeeeeeccCccchhHHHHHHHh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
....|.++|.. |+|||||+..+.+
T Consensus 7 ~~~~i~v~G~~-~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHV-DHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCT-TTTHHHHHHHHHT
T ss_pred CCCEEEEECCC-CCCHHHHHHHHhC
Confidence 44567899999 9999999998865
No 271
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=71.81 E-value=1.7 Score=41.98 Aligned_cols=25 Identities=0% Similarity=-0.451 Sum_probs=21.1
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..++.++|.+ |.||||++..+-..+
T Consensus 98 ~~vi~i~G~~-G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQ-GTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSS-CSSTTHHHHHHHHHH
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHH
Confidence 5688999998 999999998886544
No 272
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=71.81 E-value=1.8 Score=37.15 Aligned_cols=25 Identities=4% Similarity=-0.169 Sum_probs=20.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|.. |.|||||+..+.+.
T Consensus 7 ~~~~i~v~G~~-~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDS-GVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCT-TSSHHHHHHHHHHS
T ss_pred ceEEEEEECCC-CCCHHHHHHHHHhC
Confidence 34557799999 99999999888653
No 273
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=71.76 E-value=1.8 Score=37.60 Aligned_cols=22 Identities=0% Similarity=-0.254 Sum_probs=18.4
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
-|.++|.. |+|||||+..+.+.
T Consensus 3 ki~v~G~~-~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRS-NVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBT-TSSHHHHHHHHHSC
T ss_pred EEEEECCC-CCCHHHHHHHHhCc
Confidence 36789999 99999999988653
No 274
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=71.75 E-value=1.8 Score=36.37 Aligned_cols=22 Identities=5% Similarity=-0.281 Sum_probs=18.2
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
-|.++|.. |+|||||+..+.+.
T Consensus 5 ~i~v~G~~-~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSG-GVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCT-TSSHHHHHHHHHHS
T ss_pred EEEEECCC-CCCHHHHHHHHHcC
Confidence 36789999 99999999887653
No 275
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.68 E-value=2.8 Score=40.69 Aligned_cols=70 Identities=6% Similarity=-0.032 Sum_probs=37.7
Q ss_pred cceeeceecccC--HHHHHHHhcCCCCCCCCCEEEeeCCccc-cccccccCCCceEecCCCCCchhhhhhcccC
Q 011431 308 SAAHPYVEDVID--DAYMEDITDDSSPSLNLSRINSTSRFEQ-LWPETISATDTCTEDVTVDNSPSLNLSSCNS 378 (486)
Q Consensus 308 Kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a 378 (486)
+..+|++|++.. ......++...-+.....++|++|.... +..... .....+++.+++.++....+...+
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~-sR~~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA-SQCSKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH-HHSEEEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh-ccCceEEeCCCCHHHHHHHHHHHH
Confidence 456889999763 2333333311101123466777664333 321100 012368899999999888877654
No 276
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=71.64 E-value=1.8 Score=37.95 Aligned_cols=23 Identities=0% Similarity=-0.291 Sum_probs=18.8
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 22 ~ki~vvG~~-~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRR-GAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHS
T ss_pred EEEEEECCC-CCcHHHHHHHHHhC
Confidence 346699999 99999999887653
No 277
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=71.62 E-value=1.8 Score=37.41 Aligned_cols=24 Identities=0% Similarity=-0.345 Sum_probs=19.9
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
...|.++|.. |+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~-~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDG-GVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECST-TSSHHHHHHHHHHS
T ss_pred ceEEEEECCC-CCCHHHHHHHHHhC
Confidence 3456799999 99999999988764
No 278
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=71.50 E-value=2 Score=36.85 Aligned_cols=23 Identities=4% Similarity=-0.288 Sum_probs=18.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 7 ~ki~v~G~~-~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDG-ASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHGG
T ss_pred EEEEEECcC-CCCHHHHHHHHHhC
Confidence 346799999 99999999988653
No 279
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=71.43 E-value=1.9 Score=36.37 Aligned_cols=21 Identities=10% Similarity=-0.251 Sum_probs=17.9
Q ss_pred eeeeeccCccchhHHHHHHHhh
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~ 251 (486)
|.++|.. |+|||||+..+.+.
T Consensus 3 i~~~G~~-~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLD-AAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECST-TSSHHHHHHHHHHH
T ss_pred EEEECCC-CCCHHHHHHHHHcC
Confidence 5689999 99999999988653
No 280
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=71.38 E-value=1.8 Score=37.19 Aligned_cols=22 Identities=0% Similarity=-0.223 Sum_probs=18.5
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
-|.++|.. |+|||||+..+.+.
T Consensus 9 ki~~vG~~-~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDA-RSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCG-GGCHHHHHHHHHHS
T ss_pred EEEEECCC-CCCHHHHHHHHHhC
Confidence 46689999 99999999887653
No 281
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=71.36 E-value=1.9 Score=36.47 Aligned_cols=22 Identities=9% Similarity=-0.226 Sum_probs=18.5
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
-|.++|.. |+|||||+..+.+.
T Consensus 5 ~i~v~G~~-~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDS-GVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEST-TSSHHHHHHHHHHC
T ss_pred EEEEECcC-CCCHHHHHHHHHhC
Confidence 46789999 99999999888653
No 282
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=71.23 E-value=1.9 Score=36.42 Aligned_cols=22 Identities=5% Similarity=-0.177 Sum_probs=18.5
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
-|.++|.. |+|||||+..+.+.
T Consensus 8 ~i~v~G~~-~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGES-AVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECST-TSSHHHHHHHHHHS
T ss_pred EEEEECCC-CCCHHHHHHHHHcC
Confidence 46789999 99999999888753
No 283
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=71.17 E-value=3.3 Score=36.72 Aligned_cols=22 Identities=9% Similarity=-0.227 Sum_probs=18.8
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
..|.++|.+ |+|||||++.+.+
T Consensus 26 ~ki~lvG~~-~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLD-NAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEET-TSSHHHHHHHHSC
T ss_pred cEEEEECCC-CCCHHHHHHHHhc
Confidence 357799999 9999999998754
No 284
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=71.08 E-value=2.2 Score=38.29 Aligned_cols=26 Identities=12% Similarity=-0.345 Sum_probs=21.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
....|.++|.. |+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~-g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQ-NSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECST-TSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCC-CCCHHHHHHHHhcCC
Confidence 44567799999 999999999887643
No 285
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=71.08 E-value=2 Score=37.24 Aligned_cols=24 Identities=4% Similarity=-0.157 Sum_probs=19.7
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 10 ~~ki~v~G~~-~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNA-GTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEST-TSSHHHHHHHHHHS
T ss_pred ceEEEEECCC-CCCHHHHHHHHHcC
Confidence 3456799999 99999999988754
No 286
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=71.06 E-value=2 Score=40.08 Aligned_cols=23 Identities=4% Similarity=-0.421 Sum_probs=20.8
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 25 e~~~liG~n-GsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPT-GAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCT-TSSHHHHHHHHHTS
T ss_pred EEEEEECCC-CCCHHHHHHHHhCC
Confidence 789999999 99999999998754
No 287
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=71.03 E-value=1.8 Score=39.45 Aligned_cols=23 Identities=4% Similarity=-0.328 Sum_probs=19.8
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+...
T Consensus 23 e~~~liG~n-GsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPA-GSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCT-TSSTTHHHHHHHHH
T ss_pred CEEEEECCC-CCCHHHHHHHHhcC
Confidence 468899999 99999999998654
No 288
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=70.98 E-value=1.9 Score=37.77 Aligned_cols=23 Identities=0% Similarity=-0.308 Sum_probs=18.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 21 ~ki~ivG~~-~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNL-SSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCT-TSCHHHHHHHHHHS
T ss_pred eEEEEECCC-CCCHHHHHHHHhcC
Confidence 346689999 99999999776553
No 289
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=70.90 E-value=1.5 Score=43.39 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=19.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
++|++++.-||+||||+|-++=..+
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~L 26 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYF 26 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6788887666999999998764433
No 290
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=70.86 E-value=3.7 Score=37.98 Aligned_cols=26 Identities=8% Similarity=-0.362 Sum_probs=21.6
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
....|.|.|.. |.||||+++.+-+..
T Consensus 28 ~~~~I~l~G~~-GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAP-GSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCC-CCCHHHHHHHHHHHh
Confidence 45678899999 999999999886543
No 291
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=70.81 E-value=1.9 Score=38.75 Aligned_cols=22 Identities=0% Similarity=-0.250 Sum_probs=19.4
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.++.|.|-. |.|||||+..+..
T Consensus 21 ~~~~i~G~~-GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPY-ASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECST-TSSHHHHHHHHHH
T ss_pred EEEEEECCC-CCCHHHHHHHHHH
Confidence 477899999 9999999998865
No 292
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=70.74 E-value=2 Score=37.24 Aligned_cols=22 Identities=0% Similarity=-0.256 Sum_probs=18.6
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
-|.++|.. |+|||||+..+.+.
T Consensus 6 ki~v~G~~-~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGAD-GVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCT-TSSHHHHHHHHHHS
T ss_pred EEEEECCC-CCCHHHHHHHHHhC
Confidence 35689999 99999999988753
No 293
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=70.70 E-value=2.1 Score=40.64 Aligned_cols=23 Identities=0% Similarity=-0.188 Sum_probs=20.0
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.++++|-. |.|||||++.++...
T Consensus 4 ~v~lvG~n-GaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQS-GLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESS-SSSHHHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHhCCC
Confidence 46899999 999999999998754
No 294
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=70.54 E-value=2 Score=36.78 Aligned_cols=23 Identities=4% Similarity=-0.255 Sum_probs=19.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-|.++|.. |+|||||+..+.+.
T Consensus 8 ~~i~v~G~~-~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDG-GVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHS
T ss_pred eEEEEECCC-CCCHHHHHHHHHcC
Confidence 456789999 99999999988653
No 295
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=70.40 E-value=2 Score=37.03 Aligned_cols=24 Identities=0% Similarity=-0.337 Sum_probs=19.5
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~-~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSG-GVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECST-TSSHHHHHHHHHHS
T ss_pred ceEEEEECCC-CCCHHHHHHHHhhC
Confidence 3456789999 99999999988753
No 296
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=70.21 E-value=2.1 Score=36.90 Aligned_cols=23 Identities=9% Similarity=-0.136 Sum_probs=19.3
Q ss_pred ceeeeeeeccCccchhHHHHHHHh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
...|.++|.. |+|||||+..+.+
T Consensus 6 ~~ki~~~G~~-~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYR-SVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEST-TSSHHHHHHHHHH
T ss_pred eEEEEEECcC-CCCHHHHHHHHHc
Confidence 3457799999 9999999988874
No 297
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=70.17 E-value=1.8 Score=39.75 Aligned_cols=23 Identities=4% Similarity=-0.197 Sum_probs=17.6
Q ss_pred eeeeeccCccchhHHHHHHHhhhc
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
|++.|-| |+||||++-++=..+.
T Consensus 3 I~vs~kG-GvGKTt~a~~LA~~la 25 (254)
T 3kjh_A 3 LAVAGKG-GVGKTTVAAGLIKIMA 25 (254)
T ss_dssp EEEECSS-SHHHHHHHHHHHHHHT
T ss_pred EEEecCC-CCCHHHHHHHHHHHHH
Confidence 5677866 9999999988755443
No 298
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=70.09 E-value=2 Score=39.91 Aligned_cols=24 Identities=4% Similarity=-0.141 Sum_probs=20.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-- |-|||||++.+..-.
T Consensus 32 e~~~i~G~n-GsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQV-GCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECST-TSSHHHHHHHHTTCS
T ss_pred CEEEEECCC-CCCHHHHHHHHhcCC
Confidence 478999999 999999999997643
No 299
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=70.06 E-value=2.1 Score=36.36 Aligned_cols=23 Identities=9% Similarity=-0.283 Sum_probs=19.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..|.++|.. |+|||||+..+.+.
T Consensus 8 ~~i~v~G~~-~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLD-GAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECST-TSSHHHHHHHHHHS
T ss_pred cEEEEECCC-CCCHHHHHHHHhcC
Confidence 456799999 99999999988653
No 300
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=69.94 E-value=2 Score=39.82 Aligned_cols=23 Identities=4% Similarity=-0.387 Sum_probs=20.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 32 e~~~iiG~n-GsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPS-GSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECST-TSSHHHHHHHHTTS
T ss_pred CEEEEECCC-CCcHHHHHHHHhcC
Confidence 578999999 99999999998653
No 301
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=69.88 E-value=2.1 Score=36.80 Aligned_cols=23 Identities=4% Similarity=-0.250 Sum_probs=19.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-|.++|.. |+|||||+..+...
T Consensus 13 ~ki~v~G~~-~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDV-GAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCT-TSCHHHHHHHHHHC
T ss_pred eEEEEECcC-CCCHHHHHHHHHcC
Confidence 346789999 99999999888653
No 302
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=69.84 E-value=2.4 Score=39.11 Aligned_cols=24 Identities=4% Similarity=-0.216 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+.|.|.|.- |.||||+++.+.+.+
T Consensus 3 ~~i~~~G~~-g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNI-AVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECT-TSSHHHHHHHHHHHC
T ss_pred eEEEEEcCC-CCCHHHHHHHHHHHc
Confidence 467889998 999999999998765
No 303
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=69.78 E-value=2.3 Score=38.84 Aligned_cols=23 Identities=0% Similarity=-0.421 Sum_probs=19.3
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.|.+.|+. |.||||+++.+-..+
T Consensus 2 ~I~l~G~~-GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPN-GSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCT-TSCHHHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHHHHh
Confidence 46788999 999999999986654
No 304
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=69.78 E-value=2 Score=41.41 Aligned_cols=21 Identities=0% Similarity=-0.224 Sum_probs=18.0
Q ss_pred eeeeeccCccchhHHHHHHHhh
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~ 251 (486)
|+++|-. |.|||||++.++..
T Consensus 21 I~lvG~n-G~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGES-GLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEET-TSSHHHHHHHHHC-
T ss_pred EEEECCC-CCCHHHHHHHHhCC
Confidence 4899999 99999999998753
No 305
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=69.75 E-value=3.3 Score=40.62 Aligned_cols=27 Identities=7% Similarity=-0.347 Sum_probs=22.5
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
....++++.|.+ |.|||||+..+...+
T Consensus 54 ~~~~~i~i~G~~-g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTP-GAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECT-TSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCC-CCCHHHHHHHHHHHH
Confidence 456789999998 999999999886543
No 306
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=69.73 E-value=2.1 Score=37.77 Aligned_cols=24 Identities=0% Similarity=-0.337 Sum_probs=19.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 14 ~~ki~v~G~~-~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSG-GVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECST-TSSHHHHHHHHHHS
T ss_pred eEEEEEECCC-CCCHHHHHHHHHhC
Confidence 4457799999 99999999888653
No 307
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=69.73 E-value=2.1 Score=37.69 Aligned_cols=23 Identities=0% Similarity=-0.129 Sum_probs=19.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-|.++|.. |+|||||+..+.+.
T Consensus 29 ~ki~v~G~~-~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRA-GVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHS
T ss_pred eEEEEECCC-CCCHHHHHHHHHhC
Confidence 346799999 99999999888653
No 308
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=69.68 E-value=2.1 Score=37.85 Aligned_cols=25 Identities=4% Similarity=-0.185 Sum_probs=20.3
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|.. |+|||||+..+.+.
T Consensus 7 ~~~ki~v~G~~-~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDS-GVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCT-TSSHHHHHHHHHHS
T ss_pred cceEEEEECcC-CCCHHHHHHHHHcC
Confidence 34557799999 99999999988654
No 309
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=69.64 E-value=2.1 Score=40.01 Aligned_cols=23 Identities=0% Similarity=-0.452 Sum_probs=20.4
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 30 e~~~l~G~n-GsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPN-GAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECST-TSSHHHHHHHHHTC
T ss_pred CEEEEECCC-CCCHHHHHHHHhCC
Confidence 478999999 99999999999764
No 310
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=69.64 E-value=2.1 Score=36.78 Aligned_cols=22 Identities=5% Similarity=-0.225 Sum_probs=18.3
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
-|.++|.. |+|||||+..+.+.
T Consensus 10 ki~v~G~~-~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDG-AVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECST-TSSHHHHHHHHHHS
T ss_pred EEEEECCC-CCCHHHHHHHHhcC
Confidence 46689999 99999999887653
No 311
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=69.62 E-value=2 Score=40.51 Aligned_cols=23 Identities=4% Similarity=-0.359 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 33 e~~~liG~n-GsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSS-GSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCT-TSSHHHHHHHHTTS
T ss_pred CEEEEECCC-CCCHHHHHHHHhcC
Confidence 578999999 99999999998653
No 312
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=69.58 E-value=2.1 Score=37.48 Aligned_cols=24 Identities=4% Similarity=-0.233 Sum_probs=19.8
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 25 ~~ki~v~G~~-~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGES-GVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESST-TSSHHHHHHHHHHS
T ss_pred ceEEEEECcC-CCCHHHHHHHHhcC
Confidence 3457799999 99999999988763
No 313
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=69.52 E-value=2.3 Score=36.40 Aligned_cols=24 Identities=4% Similarity=-0.303 Sum_probs=19.9
Q ss_pred CceeeeeeeccCccchhHHHHHHHh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
...-|.++|.. |+|||||+..+.+
T Consensus 8 ~~~~i~v~G~~-~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDS-GVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCT-TSCHHHHHHHHCS
T ss_pred cceEEEEECCC-CCCHHHHHHHHhc
Confidence 44557799999 9999999988865
No 314
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=69.35 E-value=2.2 Score=37.42 Aligned_cols=24 Identities=4% Similarity=-0.254 Sum_probs=19.8
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 23 ~~ki~vvG~~-~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDT-GVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECT-TSSHHHHHHHHHHC
T ss_pred ceEEEEECcC-CCCHHHHHHHHhcC
Confidence 3457799999 99999999988754
No 315
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=69.26 E-value=4.4 Score=38.73 Aligned_cols=29 Identities=10% Similarity=-0.096 Sum_probs=23.1
Q ss_pred CCCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 224 AEGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 224 ~~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
....++|.|.+..||.||||+|-++=..+
T Consensus 89 ~~~~kvI~vts~kgG~GKTtva~nLA~~l 117 (286)
T 3la6_A 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVI 117 (286)
T ss_dssp TTTCCEEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 34678999999888999999998774443
No 316
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=69.25 E-value=1.7 Score=40.00 Aligned_cols=25 Identities=4% Similarity=-0.436 Sum_probs=21.1
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-.+|+|.|.- |-|||||++.+...
T Consensus 19 ~g~~i~i~G~~-GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNI-GSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECST-TSCHHHHHHTTGGG
T ss_pred CceEEEEECCC-CCCHHHHHHHHHhc
Confidence 34689999999 99999999988654
No 317
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=69.24 E-value=2.3 Score=37.24 Aligned_cols=23 Identities=4% Similarity=-0.237 Sum_probs=19.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 24 ~ki~v~G~~-~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNS-SVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEEST-TSSHHHHHHHHHHH
T ss_pred eEEEEECCC-CcCHHHHHHHHhcC
Confidence 346799999 99999999988764
No 318
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.21 E-value=2.1 Score=39.78 Aligned_cols=23 Identities=4% Similarity=-0.292 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 33 e~~~l~G~n-GsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGAN-GAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECST-TSSHHHHHHHHTTS
T ss_pred CEEEEECCC-CCCHHHHHHHHhCC
Confidence 478899999 99999999998654
No 319
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=69.14 E-value=2.5 Score=38.15 Aligned_cols=23 Identities=0% Similarity=-0.341 Sum_probs=19.2
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.|.+.|+. |.||||+++.+-..+
T Consensus 2 ~I~l~G~~-GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAP-VAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEEST-TSSHHHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHHHHh
Confidence 36788999 999999999886654
No 320
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=69.11 E-value=2.7 Score=38.62 Aligned_cols=26 Identities=4% Similarity=-0.321 Sum_probs=21.8
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...+|+|.|+. |.||||+++.+-..+
T Consensus 15 ~~~~i~i~G~~-gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPA-SSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSS-CSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCC-CCCHHHHHHHHHHHc
Confidence 45678999999 999999999886654
No 321
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=69.10 E-value=2.3 Score=37.66 Aligned_cols=24 Identities=13% Similarity=-0.010 Sum_probs=19.9
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 24 ~~ki~vvG~~-~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYR-CVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEEST-TSSHHHHHHHHHHS
T ss_pred cEEEEEECCC-CcCHHHHHHHHHhC
Confidence 4456799999 99999999988764
No 322
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=69.10 E-value=2.6 Score=38.18 Aligned_cols=24 Identities=0% Similarity=-0.447 Sum_probs=20.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..|.+.|+. |.||||+++.+-..+
T Consensus 6 ~~I~l~G~~-GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAP-GSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHh
Confidence 457788999 999999999986654
No 323
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=69.04 E-value=2.2 Score=36.74 Aligned_cols=21 Identities=5% Similarity=-0.241 Sum_probs=17.9
Q ss_pred eeeeeeccCccchhHHHHHHHh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
-|.++|.. |+|||||+..+.+
T Consensus 7 ~i~~~G~~-~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDG-AVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECST-TSSHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHHc
Confidence 46789999 9999999988764
No 324
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=69.01 E-value=2.3 Score=37.39 Aligned_cols=23 Identities=9% Similarity=-0.195 Sum_probs=19.4
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..|.++|-. |+|||||++.+.+.
T Consensus 24 ~ki~~vG~~-~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLD-NAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEEST-TSSHHHHHHHHHHS
T ss_pred cEEEEECCC-CCCHHHHHHHHhcC
Confidence 356799999 99999999988753
No 325
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=68.99 E-value=2.3 Score=36.92 Aligned_cols=24 Identities=8% Similarity=-0.126 Sum_probs=19.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 11 ~~ki~v~G~~-~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDS-GVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECST-TSSHHHHHHHHHHS
T ss_pred eEEEEEECCC-CCCHHHHHHHHhcC
Confidence 3456789999 99999999988753
No 326
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=68.95 E-value=2.3 Score=37.21 Aligned_cols=22 Identities=5% Similarity=-0.179 Sum_probs=18.9
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.-|.++|.. |+|||||+..+.+
T Consensus 9 ~ki~vvG~~-~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAG-GVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECT-TSSHHHHHHHHHH
T ss_pred eEEEEECCC-CCcHHHHHHHHHc
Confidence 456799999 9999999998865
No 327
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=68.69 E-value=1.8 Score=38.45 Aligned_cols=23 Identities=4% Similarity=-0.344 Sum_probs=19.0
Q ss_pred CceeeeeeeccCccchhHHHHHHH
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDV 249 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy 249 (486)
....|.++|.+ |+|||||++.+.
T Consensus 22 ~~~ki~vvG~~-~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGES-GVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECST-TSSHHHHHHHTC
T ss_pred cEEEEEEECCC-CCCHHHHHHHHH
Confidence 44567799999 999999998763
No 328
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=68.65 E-value=2.2 Score=40.12 Aligned_cols=24 Identities=4% Similarity=-0.352 Sum_probs=20.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-- |-|||||++.+..-+
T Consensus 34 e~~~liG~n-GsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPN-GSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECST-TSSHHHHHHHHTTSS
T ss_pred CEEEEECCC-CCCHHHHHHHHhCCC
Confidence 478899999 999999999986543
No 329
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=68.64 E-value=2.6 Score=38.69 Aligned_cols=24 Identities=0% Similarity=-0.420 Sum_probs=20.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..|.+.|+- |.||||+++.+-+.+
T Consensus 17 ~~I~l~G~~-GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPP-GAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHh
Confidence 467788998 999999999987664
No 330
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=68.63 E-value=2.2 Score=38.43 Aligned_cols=24 Identities=0% Similarity=-0.531 Sum_probs=20.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.++.|.|-. |.|||||++.+....
T Consensus 24 ~~~~i~G~~-GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEP-GTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECST-TSSHHHHHHHHHHHH
T ss_pred CEEEEEcCC-CCCHHHHHHHHHHHH
Confidence 577899999 999999999987544
No 331
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.59 E-value=2.6 Score=41.06 Aligned_cols=71 Identities=6% Similarity=-0.099 Sum_probs=40.9
Q ss_pred cceeeceecccC--HHHHHHHhcCCCCCCCCCEEEeeCCccc-cccccccCCCceEecCCCCCchhhhhhcccCC
Q 011431 308 SAAHPYVEDVID--DAYMEDITDDSSPSLNLSRINSTSRFEQ-LWPETISATDTCTEDVTVDNSPSLNLSSCNSS 379 (486)
Q Consensus 308 Kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-V~~~~~~~~~~~y~v~~L~~~es~~LF~~~a~ 379 (486)
+..++++|++.. ......+....-+...+.++|+||.+.+ +... .......+++++++.++....+...+.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~-l~sR~~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP-IKSQCLLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHH-HHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHH-HHhhceEEecCCcCHHHHHHHHHHHHH
Confidence 566899999874 2222333311101123677777776543 3211 111225789999999999888876653
No 332
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=68.58 E-value=2.2 Score=39.28 Aligned_cols=24 Identities=8% Similarity=-0.182 Sum_probs=20.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-- |-|||||++.+....
T Consensus 35 e~~~i~G~n-GsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGST-GAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCT-TSSHHHHHHHHTTSS
T ss_pred CEEEEECCC-CCCHHHHHHHHhCCC
Confidence 478899999 999999999997643
No 333
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=68.52 E-value=4.2 Score=39.75 Aligned_cols=26 Identities=8% Similarity=-0.235 Sum_probs=21.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhcc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMD 254 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~ 254 (486)
+.+-++|.. |.|||+||+.+.+.+..
T Consensus 71 ~~vLl~Gpp-GtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQP-GTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CEEEEEEST-TSSHHHHHHHHHHHHCS
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHhcc
Confidence 456689999 99999999999887653
No 334
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=68.45 E-value=2.4 Score=36.44 Aligned_cols=24 Identities=4% Similarity=-0.377 Sum_probs=19.5
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 10 ~~~i~v~G~~-~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDS-GVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECST-TSSHHHHHHHHHHS
T ss_pred ceEEEEECcC-CCCHHHHHHHHHhC
Confidence 3456789999 99999999988653
No 335
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=68.24 E-value=2.2 Score=39.07 Aligned_cols=23 Identities=4% Similarity=-0.218 Sum_probs=20.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+...
T Consensus 36 e~~~iiG~N-GsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPN-GIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCT-TSSHHHHHHHHTTS
T ss_pred CEEEEECCC-CCCHHHHHHHHhcC
Confidence 478899999 99999999998764
No 336
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=68.20 E-value=2.3 Score=40.27 Aligned_cols=23 Identities=4% Similarity=-0.396 Sum_probs=20.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 51 ei~~liG~N-GsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPS-GSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCT-TSSHHHHHHHHTTS
T ss_pred CEEEEEcCC-CCcHHHHHHHHHcC
Confidence 578999999 99999999998654
No 337
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=68.18 E-value=2.5 Score=36.11 Aligned_cols=21 Identities=5% Similarity=-0.197 Sum_probs=18.0
Q ss_pred eeeeeeccCccchhHHHHHHHh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
-|.++|.. |+|||||+..+.+
T Consensus 16 ~i~v~G~~-~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQ-SVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEST-TSSHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHHc
Confidence 46789999 9999999998864
No 338
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=68.16 E-value=2.4 Score=37.01 Aligned_cols=23 Identities=0% Similarity=-0.231 Sum_probs=19.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 8 ~ki~v~G~~-~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGES-SVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHS
T ss_pred eEEEEECCC-CCCHHHHHHHHHhC
Confidence 346799999 99999999988764
No 339
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=68.07 E-value=2.7 Score=39.04 Aligned_cols=25 Identities=8% Similarity=-0.310 Sum_probs=21.2
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..+|.|.|.. |.||||+++.+-..+
T Consensus 9 ~~~i~i~G~~-GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPA-GTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHh
Confidence 3578899999 999999999986654
No 340
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=68.05 E-value=2.4 Score=39.41 Aligned_cols=23 Identities=0% Similarity=-0.415 Sum_probs=20.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 29 e~~~i~G~n-GsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPS-GGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCT-TSSHHHHHHHHTTS
T ss_pred CEEEEECCC-CCCHHHHHHHHhcC
Confidence 578999999 99999999998654
No 341
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=67.99 E-value=5.1 Score=37.39 Aligned_cols=25 Identities=0% Similarity=-0.218 Sum_probs=20.8
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|-. |.|||||+..+...
T Consensus 35 ~~~~I~lvG~~-g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKG-GVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECT-TSSHHHHHHHHHTS
T ss_pred CCcEEEEECCC-CCCHHHHHHHHhCC
Confidence 34567899999 99999999998764
No 342
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=67.98 E-value=2.5 Score=37.90 Aligned_cols=24 Identities=4% Similarity=-0.276 Sum_probs=19.7
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 28 ~~ki~vvG~~-~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDS-QCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEEST-TSSHHHHHHHHHHS
T ss_pred eeEEEEECCC-CCCHHHHHHHHhcC
Confidence 3456799999 99999999988763
No 343
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.97 E-value=4.1 Score=41.85 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 214 LDEVLSLLRNAEGYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 214 l~~v~~ll~~~~~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
+..+...+.......+ =++|-. |+|||+||+.+.+.+.
T Consensus 189 i~~l~~~l~r~~~~~~-LL~G~p-G~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 189 IQRVIEVLSRRTKNNP-VLIGEP-GVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHHHHHHCSSSCEE-EEESCT-TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCe-EEECCC-CCCHHHHHHHHHHHHH
Confidence 3445555543222233 488999 9999999999988763
No 344
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=67.93 E-value=2.3 Score=40.01 Aligned_cols=23 Identities=4% Similarity=-0.307 Sum_probs=20.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 42 ei~~l~G~N-GsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPN-GAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCT-TSSHHHHHHHHTTS
T ss_pred cEEEEECCC-CCCHHHHHHHHhcC
Confidence 478999999 99999999998754
No 345
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=67.91 E-value=2.4 Score=37.86 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=19.3
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
...|.++|.+ |+|||||+..+.+.
T Consensus 7 ~~ki~vvG~~-~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLC-DSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECST-TSSHHHHHHHHHHS
T ss_pred CCEEEEECCC-CCCHHHHHHHHhCC
Confidence 3456799999 99999999988653
No 346
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=67.89 E-value=2.4 Score=40.08 Aligned_cols=23 Identities=0% Similarity=-0.357 Sum_probs=20.4
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 47 e~~~l~G~N-GsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPN-GSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHTC
T ss_pred CEEEEECCC-CCCHHHHHHHHhCC
Confidence 478899999 99999999999764
No 347
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=67.85 E-value=5 Score=38.49 Aligned_cols=29 Identities=7% Similarity=-0.208 Sum_probs=22.9
Q ss_pred CCCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 224 AEGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 224 ~~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
....++|.|.+..||.||||+|.++-..+
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~l 129 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVI 129 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence 34668999999877999999998775443
No 348
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=67.76 E-value=2.5 Score=37.01 Aligned_cols=24 Identities=4% Similarity=-0.256 Sum_probs=19.5
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 22 ~~ki~v~G~~-~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQ-YSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECST-TSSHHHHHHHHHHS
T ss_pred ccEEEEECCC-CCCHHHHHHHHHcC
Confidence 3456799999 99999999988753
No 349
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=67.69 E-value=2.7 Score=38.55 Aligned_cols=25 Identities=0% Similarity=-0.399 Sum_probs=21.0
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|+++|.. |+|||||+..+...
T Consensus 28 ~~~~i~lvG~~-g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKT-GAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCT-TSSHHHHHHHHHTS
T ss_pred CceEEEEECCC-CCCHHHHHHHHcCC
Confidence 45667899999 99999999988763
No 350
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=67.69 E-value=2.3 Score=40.45 Aligned_cols=26 Identities=4% Similarity=-0.271 Sum_probs=18.8
Q ss_pred ceeeeeee--ccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWL--LCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~G--mGgGvGKTTLa~~vy~~~ 252 (486)
-++|.|++ .-||+||||++-++-..+
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 35778887 334999999998775443
No 351
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=67.59 E-value=2.5 Score=36.93 Aligned_cols=25 Identities=4% Similarity=-0.346 Sum_probs=20.4
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
...-|.++|.. |+|||||+..+.+.
T Consensus 15 ~~~ki~v~G~~-~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDS-GVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECST-TSSHHHHHHHHHHS
T ss_pred cceEEEEECcC-CCCHHHHHHHHHcC
Confidence 34457799999 99999999988764
No 352
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=67.56 E-value=2.4 Score=37.43 Aligned_cols=23 Identities=4% Similarity=-0.247 Sum_probs=19.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-|.++|.. |+|||||+..+.+.
T Consensus 9 ~ki~v~G~~-~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNS-SVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECST-TSSHHHHHHHHHTC
T ss_pred eEEEEECCC-CCCHHHHHHHHhcC
Confidence 456799999 99999999988653
No 353
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=67.54 E-value=4.8 Score=38.03 Aligned_cols=29 Identities=10% Similarity=-0.092 Sum_probs=22.6
Q ss_pred CCCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 224 AEGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 224 ~~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..+.++|.|.+..||.||||++-++=..+
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~l 107 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAY 107 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 34678999998866999999998775443
No 354
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=67.52 E-value=2.5 Score=37.07 Aligned_cols=23 Identities=4% Similarity=-0.322 Sum_probs=19.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 24 ~ki~~vG~~-~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDG-AVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECST-TSSHHHHHHHHHHS
T ss_pred eEEEEECcC-CCCHHHHHHHHhcC
Confidence 446689999 99999999988764
No 355
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=67.51 E-value=2.4 Score=37.59 Aligned_cols=24 Identities=4% Similarity=-0.237 Sum_probs=19.6
Q ss_pred CceeeeeeeccCccchhHHHHHHHh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
...-|.++|.. |+|||||+..+.+
T Consensus 24 ~~~ki~v~G~~-~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSA-GTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEEST-TSSHHHHHHHHHC
T ss_pred cceEEEEECcC-CCCHHHHHHHHHh
Confidence 34456799999 9999999988864
No 356
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=67.43 E-value=2.4 Score=39.95 Aligned_cols=24 Identities=0% Similarity=-0.367 Sum_probs=20.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-- |-|||||++.+..-.
T Consensus 47 e~~~i~G~n-GsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHT-GSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECST-TSSHHHHHHHHTTSS
T ss_pred CEEEEECCC-CCCHHHHHHHHhccC
Confidence 478999999 999999999997643
No 357
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=67.39 E-value=2.4 Score=40.39 Aligned_cols=23 Identities=4% Similarity=-0.328 Sum_probs=20.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 35 e~~~iiGpn-GsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGN-GVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCT-TSSHHHHHHHHTTS
T ss_pred CEEEEECCC-CCCHHHHHHHHHcC
Confidence 478899999 99999999998653
No 358
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=67.37 E-value=2.6 Score=36.50 Aligned_cols=23 Identities=9% Similarity=-0.221 Sum_probs=19.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..|.++|.. |+|||||+..+.+.
T Consensus 22 ~~i~v~G~~-~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLD-NAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEET-TSSHHHHHHHHHTT
T ss_pred eEEEEECCC-CCCHHHHHHHHhcC
Confidence 446799999 99999999988754
No 359
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=67.37 E-value=6.2 Score=40.67 Aligned_cols=23 Identities=9% Similarity=-0.224 Sum_probs=18.5
Q ss_pred CceeeeeeeccCccchhHHHHHHHh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
+++ |.|+|.. |+|||||+..+.+
T Consensus 233 ~~k-V~ivG~~-nvGKSSLln~L~~ 255 (476)
T 3gee_A 233 GVS-TVIAGKP-NAGKSTLLNTLLG 255 (476)
T ss_dssp CEE-EEEECCT-TSSHHHHHHHCC-
T ss_pred CCE-EEEECCC-CCCHHHHHHHHhC
Confidence 454 7799999 9999999987754
No 360
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=67.31 E-value=2.6 Score=37.63 Aligned_cols=25 Identities=0% Similarity=-0.370 Sum_probs=20.1
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
...-|.++|.. |+|||||+..+.+.
T Consensus 25 ~~~ki~lvG~~-~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNA-GVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEEST-TSSHHHHHHHHHHS
T ss_pred cceEEEEECcC-CCCHHHHHHHHHhC
Confidence 34457799999 99999999987653
No 361
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=67.26 E-value=2.5 Score=37.00 Aligned_cols=23 Identities=9% Similarity=-0.198 Sum_probs=18.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 22 ~ki~v~G~~-~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDT-GVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESST-TSSHHHHHHHHHHS
T ss_pred eEEEEECcC-CCCHHHHHHHHhcC
Confidence 346789999 99999999888653
No 362
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=67.21 E-value=2.4 Score=37.40 Aligned_cols=23 Identities=0% Similarity=-0.255 Sum_probs=18.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-|.++|.. |+|||||+..+.+.
T Consensus 21 ~ki~~~G~~-~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDG-AVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECST-TSSHHHHHHHHHC-
T ss_pred eEEEEECCC-CCCHHHHHHHHHhC
Confidence 446699999 99999999888653
No 363
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=67.18 E-value=1.6 Score=38.80 Aligned_cols=22 Identities=5% Similarity=-0.277 Sum_probs=18.7
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
..|+++|-. |.|||||++.+..
T Consensus 27 ~~v~lvG~~-g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRS-NAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECT-TSSHHHHHTTTCC
T ss_pred cEEEEECCC-CCCHHHHHHHHhC
Confidence 568899999 9999999987643
No 364
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=67.16 E-value=2.5 Score=40.07 Aligned_cols=23 Identities=4% Similarity=-0.373 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 38 e~~~liG~n-GsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPN-GAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCT-TSCHHHHHHHHTSS
T ss_pred CEEEEECCC-CCcHHHHHHHHhcC
Confidence 578899999 99999999998653
No 365
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=67.09 E-value=2.5 Score=39.63 Aligned_cols=24 Identities=4% Similarity=-0.284 Sum_probs=20.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-- |-|||||++.+...+
T Consensus 27 e~~~liG~N-GsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPN-GAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCT-TSSHHHHHHHHTTSS
T ss_pred CEEEEECCC-CCcHHHHHHHHhCCC
Confidence 478899999 999999999987644
No 366
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=67.06 E-value=2.5 Score=40.17 Aligned_cols=24 Identities=4% Similarity=-0.377 Sum_probs=20.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-- |-|||||++.+..-+
T Consensus 46 e~~~i~G~n-GsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPN-GSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECST-TSSHHHHHHHHTTSS
T ss_pred CEEEEECCC-CCCHHHHHHHHhcCC
Confidence 478999999 999999999997643
No 367
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=67.03 E-value=2.5 Score=40.00 Aligned_cols=23 Identities=4% Similarity=-0.343 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 34 e~~~liG~n-GsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNT-GSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECST-TSSHHHHHHHHTTS
T ss_pred CEEEEECCC-CCcHHHHHHHHhCC
Confidence 478899999 99999999998754
No 368
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=67.00 E-value=2.7 Score=40.76 Aligned_cols=25 Identities=4% Similarity=-0.207 Sum_probs=21.6
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+.++.|.|.- |-|||||++.+...
T Consensus 3 ~i~v~~i~G~~-GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFL-GAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESS-SSSCHHHHHHHHHS
T ss_pred cccEEEEEecC-CCCHHHHHHHHHhh
Confidence 46788999999 99999999998754
No 369
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=66.93 E-value=5.5 Score=37.33 Aligned_cols=25 Identities=0% Similarity=-0.221 Sum_probs=20.7
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|-. |+|||||...+.+.
T Consensus 38 ~~~~I~vvG~~-g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKG-GVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEEST-TSSHHHHHHHHHTS
T ss_pred CCeEEEEECCC-CCCHHHHHHHHhCC
Confidence 34567799999 99999999998764
No 370
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=66.89 E-value=2.5 Score=39.49 Aligned_cols=23 Identities=0% Similarity=-0.432 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+..-
T Consensus 36 e~~~i~G~n-GsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRS-GSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECST-TSSHHHHHHHHTTS
T ss_pred CEEEEECCC-CCCHHHHHHHHhcC
Confidence 478899999 99999999998654
No 371
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=66.86 E-value=2.6 Score=36.74 Aligned_cols=24 Identities=4% Similarity=-0.236 Sum_probs=19.8
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|-. |+|||||+..+.+.
T Consensus 22 ~~ki~vvG~~-~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNS-SVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECST-TSSHHHHHHHHHHS
T ss_pred eeEEEEECCC-CCCHHHHHHHHHcC
Confidence 4457799999 99999999988653
No 372
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=66.67 E-value=2.5 Score=38.50 Aligned_cols=23 Identities=0% Similarity=-0.221 Sum_probs=19.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.++.|.|-. |.|||||+..+...
T Consensus 25 ~~~~i~G~~-GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEF-RTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCT-TSSHHHHHHHHHHH
T ss_pred eEEEEECCC-CCcHHHHHHHHHHH
Confidence 478899999 99999999998764
No 373
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=66.63 E-value=2.8 Score=36.51 Aligned_cols=23 Identities=9% Similarity=-0.271 Sum_probs=19.3
Q ss_pred ceeeeeeeccCccchhHHHHHHHh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
...|.++|.. |+|||||+..+.+
T Consensus 16 ~~~i~v~G~~-~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLD-NAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEEST-TSSHHHHHHHHHT
T ss_pred ccEEEEECCC-CCCHHHHHHHHhc
Confidence 3456799999 9999999998874
No 374
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=66.62 E-value=2.7 Score=36.62 Aligned_cols=23 Identities=4% Similarity=-0.263 Sum_probs=19.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..|.++|.. |+|||||+..+.+.
T Consensus 16 ~~i~v~G~~-~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGES-GVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECST-TSSHHHHHHHHHHS
T ss_pred eEEEEECCC-CCCHHHHHHHHHcC
Confidence 356789999 99999999988764
No 375
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=66.61 E-value=2.8 Score=40.69 Aligned_cols=24 Identities=4% Similarity=-0.227 Sum_probs=20.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+-+-++|.. |.|||+||+++.+..
T Consensus 46 ~~iLL~Gpp-GtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPP-GTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSS-SSCHHHHHHHHHHHT
T ss_pred ceEEEECCC-CccHHHHHHHHHHHc
Confidence 445688999 999999999998876
No 376
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=66.58 E-value=2.6 Score=39.86 Aligned_cols=24 Identities=4% Similarity=-0.335 Sum_probs=20.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.++.|+|-. |.|||||+..+...+
T Consensus 31 ~i~~i~G~~-GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPG-GAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEEST-TSSHHHHHHHHHHHH
T ss_pred CEEEEEcCC-CCCHHHHHHHHHHHH
Confidence 577899999 999999999887544
No 377
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=66.46 E-value=2.3 Score=38.26 Aligned_cols=25 Identities=4% Similarity=-0.300 Sum_probs=20.9
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|.. |.|||||+..+.+.
T Consensus 28 ~~~~i~v~G~~-~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRS-NAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESC-HHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCC-CCCHHHHHHHHhCC
Confidence 45667899999 99999999888654
No 378
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=66.42 E-value=8.7 Score=38.60 Aligned_cols=44 Identities=7% Similarity=-0.075 Sum_probs=29.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHH
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKK 272 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~ 272 (486)
..++|+|-. |.|||||++.+-+.+..+.....++.+.+.+....
T Consensus 175 Qr~~IvG~s-G~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~E 218 (422)
T 3ice_A 175 QRGLIVAPP-KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 218 (422)
T ss_dssp CEEEEECCS-SSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHH
T ss_pred cEEEEecCC-CCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHH
Confidence 467899999 99999999988766544332222344556655443
No 379
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=66.41 E-value=2.8 Score=41.32 Aligned_cols=26 Identities=4% Similarity=-0.367 Sum_probs=21.4
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.+-+-++|.. |.||||||+++.+...
T Consensus 117 ~~~vLl~Gpp-GtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 117 PKGILLFGPP-GTGKTLIGKCIASQSG 142 (357)
T ss_dssp CSEEEEESST-TSSHHHHHHHHHHHTT
T ss_pred CceEEEECCC-CCCHHHHHHHHHHHcC
Confidence 3456689999 9999999999988753
No 380
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=66.37 E-value=2.6 Score=37.17 Aligned_cols=25 Identities=4% Similarity=-0.282 Sum_probs=19.8
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
...-|.++|.. |+|||||+..+.+.
T Consensus 27 ~~~ki~v~G~~-~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDA-AVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESST-TSSHHHHHHHHHHC
T ss_pred CCeEEEEECcC-CCCHHHHHHHHHhC
Confidence 34556799999 99999999988653
No 381
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=66.28 E-value=2.7 Score=36.61 Aligned_cols=24 Identities=0% Similarity=-0.402 Sum_probs=19.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 20 ~~ki~v~G~~-~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDS-NVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCT-TSSHHHHHHHHHHS
T ss_pred eEEEEEECCC-CCCHHHHHHHHHcC
Confidence 3457799999 99999999988653
No 382
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=66.28 E-value=2.6 Score=39.50 Aligned_cols=23 Identities=4% Similarity=-0.283 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-. |-|||||++.+..-
T Consensus 32 e~~~l~G~n-GsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQN-GCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCS-SSSHHHHHHHHTTS
T ss_pred CEEEEECCC-CCCHHHHHHHHhCC
Confidence 478899999 99999999998764
No 383
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=66.19 E-value=2.6 Score=37.82 Aligned_cols=22 Identities=5% Similarity=-0.384 Sum_probs=18.8
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.-|.++|.. |+|||||+..+.+
T Consensus 35 ~ki~vvG~~-~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDG-GCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECT-TSSHHHHHHHHHC
T ss_pred EEEEEECcC-CCCHHHHHHHHHc
Confidence 456799999 9999999988865
No 384
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=66.15 E-value=2.8 Score=41.41 Aligned_cols=25 Identities=0% Similarity=-0.297 Sum_probs=20.7
Q ss_pred eeeeeeccCccchhHHHHHHHhhhcc
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQLMD 254 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~~~ 254 (486)
-|-++|.. |.|||+||+++.+....
T Consensus 86 ~iLL~Gpp-GtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 86 GILLYGPP-GTGKSYLAKAVATEANS 110 (355)
T ss_dssp CEEEECST-TSCHHHHHHHHHHHHTC
T ss_pred eEEEECCC-CCcHHHHHHHHHHHhCC
Confidence 35588998 99999999999887643
No 385
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=66.10 E-value=2.9 Score=36.61 Aligned_cols=23 Identities=4% Similarity=-0.216 Sum_probs=19.4
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-|.++|.. |+|||||+..+.+.
T Consensus 19 ~ki~v~G~~-~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDG-AVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECT-TSSHHHHHHHHHHS
T ss_pred EEEEEECCC-CCCHHHHHHHHhcC
Confidence 456789999 99999999988764
No 386
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=65.97 E-value=2.8 Score=39.95 Aligned_cols=23 Identities=0% Similarity=-0.359 Sum_probs=19.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+|-+.|+. |.||||+++.+-.+
T Consensus 3 ~~I~l~G~~-GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCP-GSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHHh
Confidence 467789999 99999999998663
No 387
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=65.97 E-value=3.1 Score=39.10 Aligned_cols=23 Identities=0% Similarity=-0.237 Sum_probs=19.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..|+++|-. |.|||||+..+...
T Consensus 4 ~~i~lvG~~-g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNP-NVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECS-SSSHHHHHHHHHTT
T ss_pred eEEEEECCC-CCCHHHHHHHHhCC
Confidence 467899999 99999999988654
No 388
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=65.86 E-value=2.7 Score=40.12 Aligned_cols=24 Identities=8% Similarity=-0.173 Sum_probs=20.4
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-- |-|||||++.+...+
T Consensus 48 e~~~liG~N-GsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLN-GAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCT-TSSHHHHHHHHTTSS
T ss_pred CEEEEECCC-CCcHHHHHHHHhCCC
Confidence 478899999 999999999987543
No 389
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=65.80 E-value=2.9 Score=37.19 Aligned_cols=23 Identities=4% Similarity=-0.244 Sum_probs=19.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-|.++|.. |+|||||+..+.+.
T Consensus 26 ~ki~vvG~~-~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDG-ACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECT-TSSHHHHHHHHHHS
T ss_pred cEEEEECcC-CCCHHHHHHHHhcC
Confidence 357799999 99999999888653
No 390
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=65.73 E-value=2.8 Score=39.95 Aligned_cols=25 Identities=4% Similarity=-0.215 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.+++|.|-. |.|||||++.+...+.
T Consensus 36 ~~~~i~G~~-G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 36 EVIMVTSGS-GMGKSTFVRQQALQWG 60 (296)
T ss_dssp CEEEEEEST-TSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCC-CCCHHHHHHHHHHHHH
Confidence 478899999 9999999998876543
No 391
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.72 E-value=2.3 Score=36.69 Aligned_cols=24 Identities=8% Similarity=-0.320 Sum_probs=19.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
....|.++|.. |+|||||+..+.+
T Consensus 17 ~~~~i~v~G~~-~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLD-GAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEET-TSSHHHHHHHTCC
T ss_pred CccEEEEECCC-CCCHHHHHHHHhc
Confidence 34566799999 9999999987753
No 392
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=65.52 E-value=1.7 Score=36.62 Aligned_cols=22 Identities=5% Similarity=-0.582 Sum_probs=18.8
Q ss_pred eeeeeccCccchhHHHHHHHhhh
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
|=|+|-. |.|||++|+.+++..
T Consensus 30 vll~G~~-GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEA-GSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEET-TCCHHHHHGGGCCTT
T ss_pred EEEECCC-CccHHHHHHHHHHhC
Confidence 4489999 999999999997754
No 393
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=65.43 E-value=2.8 Score=42.63 Aligned_cols=27 Identities=4% Similarity=-0.309 Sum_probs=22.1
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhhc
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
...++.++|.+ |.||||++..+-..+.
T Consensus 97 ~~~vi~i~G~~-GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQ-GSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCT-TSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCC-CCCHHHHHHHHHHHHH
Confidence 35689999998 9999999988866543
No 394
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.42 E-value=5.4 Score=38.72 Aligned_cols=25 Identities=0% Similarity=-0.165 Sum_probs=20.8
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+..+.++|-. |.||||+|+.+.+.+
T Consensus 46 ~~~~ll~Gp~-G~GKTtla~~la~~l 70 (340)
T 1sxj_C 46 LPHLLFYGPP-GTGKTSTIVALAREI 70 (340)
T ss_dssp CCCEEEECSS-SSSHHHHHHHHHHHH
T ss_pred CceEEEECCC-CCCHHHHHHHHHHHH
Confidence 3337799999 999999999998765
No 395
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=65.31 E-value=3 Score=36.95 Aligned_cols=24 Identities=4% Similarity=-0.306 Sum_probs=19.5
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|-. |+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~-~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNS-GVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEST-TSSHHHHHHHHHHC
T ss_pred ceEEEEECCC-CCCHHHHHHHHhcC
Confidence 3456789999 99999999888653
No 396
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=65.29 E-value=3.2 Score=37.62 Aligned_cols=25 Identities=0% Similarity=-0.295 Sum_probs=20.5
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|.. |+|||||+..+.+.
T Consensus 28 ~~~kI~vvG~~-~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAP-NVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECST-TSSHHHHHHHHTTT
T ss_pred CCCEEEEECCC-CCCHHHHHHHHhCC
Confidence 44567899999 99999999888653
No 397
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=65.28 E-value=3.1 Score=41.00 Aligned_cols=26 Identities=4% Similarity=-0.469 Sum_probs=22.4
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+..+|+|+|.. |.|||||...+....
T Consensus 73 ~~~~v~lvG~p-gaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPP-GAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCT-TSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCC-CCCHHHHHHHHHHHh
Confidence 46789999999 999999999887643
No 398
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=65.20 E-value=2.7 Score=36.74 Aligned_cols=24 Identities=4% Similarity=-0.248 Sum_probs=20.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
....|.++|.. |+|||||+..+.+
T Consensus 16 ~~~ki~v~G~~-~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLD-NSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCT-TSCHHHHHHHHSC
T ss_pred CCcEEEEECCC-CCCHHHHHHHHhc
Confidence 45567899999 9999999988765
No 399
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=64.86 E-value=6 Score=37.31 Aligned_cols=25 Identities=16% Similarity=-0.140 Sum_probs=21.0
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|-. |+|||||+..+...
T Consensus 25 ~~~~i~vvG~~-~~GKSSLln~l~g~ 49 (299)
T 2aka_B 25 DLPQIAVVGGQ-SAGKSSVLENFVGR 49 (299)
T ss_dssp CCCEEEEEEBT-TSCHHHHHHHHHTS
T ss_pred CCCeEEEEeCC-CCCHHHHHHHHHCC
Confidence 45578899999 99999999988653
No 400
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=64.68 E-value=2.7 Score=36.47 Aligned_cols=25 Identities=8% Similarity=-0.225 Sum_probs=20.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
....|.++|.. |+|||||+..+.+.
T Consensus 17 ~~~~i~v~G~~-~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLD-NAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECST-TSSHHHHHHHHTTC
T ss_pred CeeEEEEECCC-CCCHHHHHHHHhcC
Confidence 34456799999 99999999988754
No 401
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=64.61 E-value=3.1 Score=36.99 Aligned_cols=23 Identities=4% Similarity=-0.292 Sum_probs=18.8
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 10 ~ki~i~G~~-~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDG-AVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEST-TSSHHHHHHHHHHS
T ss_pred EEEEEECCC-CCCHHHHHHHHhcC
Confidence 346799999 99999999887653
No 402
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=64.48 E-value=3.3 Score=40.43 Aligned_cols=24 Identities=4% Similarity=-0.231 Sum_probs=20.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
++|.|+|.- |.|||||+..+-.++
T Consensus 6 ~~i~i~Gpt-GsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPT-AAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCT-TSCHHHHHHHHHHHS
T ss_pred cEEEEECCC-CCCHHHHHHHHHHHc
Confidence 467899999 999999999987664
No 403
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=64.41 E-value=3.8 Score=38.98 Aligned_cols=25 Identities=8% Similarity=-0.109 Sum_probs=21.5
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...+.++|-. |.||||+|+.+.+..
T Consensus 47 ~~~~ll~G~~-GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPT-GVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCS-SSSHHHHHHHHHHHH
T ss_pred ceEEEEECCC-CcCHHHHHHHHHHHH
Confidence 3467899999 999999999998865
No 404
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=64.32 E-value=3.2 Score=36.80 Aligned_cols=24 Identities=4% Similarity=-0.316 Sum_probs=19.7
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+.+.
T Consensus 29 ~~ki~vvG~~-~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDA-SVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECT-TSSHHHHHHHHHHS
T ss_pred ceEEEEECcC-CCCHHHHHHHHhhC
Confidence 4457799999 99999999888653
No 405
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=64.26 E-value=3.3 Score=36.67 Aligned_cols=23 Identities=4% Similarity=-0.260 Sum_probs=19.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.-|.++|.. |+|||||+..+.+.
T Consensus 26 ~ki~vvG~~-~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDG-ACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEST-TSSHHHHHHHHHHS
T ss_pred eEEEEECCC-CCCHHHHHHHHHhC
Confidence 356799999 99999999888653
No 406
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=64.19 E-value=3.5 Score=38.12 Aligned_cols=23 Identities=4% Similarity=-0.171 Sum_probs=17.1
Q ss_pred eeeeeccCccchhHHHHHHHhhhc
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
|-+.|-| |+||||++-++-..+.
T Consensus 9 I~~~~kg-GvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 9 VFLGAAP-GVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEESST-TSSHHHHHHHHHHHHH
T ss_pred EEEECCC-CCcHHHHHHHHHHHHH
Confidence 4466777 9999999877765543
No 407
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=63.99 E-value=3.1 Score=36.64 Aligned_cols=22 Identities=9% Similarity=-0.253 Sum_probs=18.4
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.-|.++|.. |+|||||+..+.+
T Consensus 30 ~ki~v~G~~-~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 30 MRILMVGLD-AAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEEEST-TSSHHHHHHHHCS
T ss_pred cEEEEECCC-CCCHHHHHHHHHh
Confidence 446799999 9999999998754
No 408
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=63.90 E-value=3.1 Score=40.16 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=21.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.-+-++|-. |.|||+||.++.+...
T Consensus 153 ~~lll~G~~-GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDM-GIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECST-TSSHHHHHHHHHHHHH
T ss_pred ceEEEECCC-CCCHHHHHHHHHHHHH
Confidence 455689998 9999999999998765
No 409
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=63.84 E-value=3.3 Score=36.82 Aligned_cols=22 Identities=5% Similarity=-0.266 Sum_probs=18.4
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
-.|.++|.. |+|||||+..+.+
T Consensus 31 ~ki~vvG~~-~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDG-AVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEEST-TSSHHHHHHHHHH
T ss_pred EEEEEECcC-CCCHHHHHHHHHh
Confidence 445799999 9999999987764
No 410
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=63.74 E-value=6.3 Score=39.33 Aligned_cols=26 Identities=4% Similarity=-0.270 Sum_probs=22.0
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.-++++|+|.. |.|||||++.+....
T Consensus 168 ~~~~i~l~G~~-GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPI-DSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECST-TSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCC-CCCHHHHHHHHHhhc
Confidence 34688999999 999999999997653
No 411
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=63.74 E-value=3 Score=36.59 Aligned_cols=22 Identities=0% Similarity=-0.309 Sum_probs=18.5
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.-|.++|.. |+|||||+..+.+
T Consensus 27 ~ki~vvG~~-~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSR-GVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECST-TSSHHHHHHHHCC
T ss_pred eEEEEECCC-CCCHHHHHHHHhc
Confidence 346789999 9999999988864
No 412
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=63.72 E-value=2.4 Score=37.07 Aligned_cols=23 Identities=9% Similarity=-0.047 Sum_probs=19.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..|.++|.. |+|||||+..+.+.
T Consensus 22 ~ki~v~G~~-~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLD-NSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECT-TSSHHHHHHHTSCG
T ss_pred cEEEEECCC-CCCHHHHHHHHhcC
Confidence 446799999 99999999887654
No 413
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=63.72 E-value=3.3 Score=36.53 Aligned_cols=22 Identities=0% Similarity=-0.458 Sum_probs=18.1
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
--|.++|-+ |+|||||+....+
T Consensus 7 ~kv~lvG~~-~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQ-GVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECST-TSSHHHHHHHHHH
T ss_pred EEEEEECCC-CCCHHHHHHHHhc
Confidence 346799999 9999999987653
No 414
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=63.64 E-value=3.5 Score=37.08 Aligned_cols=24 Identities=4% Similarity=-0.204 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|+|.|+- |.||||+++.+-..+
T Consensus 4 ~~i~i~G~~-gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPA-AAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCT-TSSHHHHHHHHHHHT
T ss_pred eEEEEECCC-CCCHHHHHHHHHHhc
Confidence 468899999 999999999886544
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=63.43 E-value=3.8 Score=37.70 Aligned_cols=27 Identities=11% Similarity=-0.132 Sum_probs=22.5
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhcc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLMD 254 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~~ 254 (486)
-.+|.|.|.- |.||||+++.+.+.+..
T Consensus 26 g~~i~i~G~~-GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPE-GSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCT-TSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCC-CCCHHHHHHHHHHHHhc
Confidence 3577899999 99999999999877643
No 416
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=63.35 E-value=3.6 Score=38.72 Aligned_cols=24 Identities=0% Similarity=-0.256 Sum_probs=20.8
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-- |-|||||++.+...+
T Consensus 26 ~~v~i~Gp~-GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPT-GSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECST-TCSHHHHHHHHHHHH
T ss_pred CEEEEECCC-CccHHHHHHHHHHhC
Confidence 578899999 999999999987644
No 417
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=63.35 E-value=3.3 Score=36.71 Aligned_cols=24 Identities=8% Similarity=-0.240 Sum_probs=19.6
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|.. |+|||||+..+...
T Consensus 20 ~~~i~v~G~~-~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDS-GVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECST-TSSHHHHHHHHHHC
T ss_pred ceEEEEECCC-CCCHHHHHHHHHhC
Confidence 3456799999 99999999988753
No 418
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=63.25 E-value=3.5 Score=39.03 Aligned_cols=24 Identities=0% Similarity=-0.299 Sum_probs=19.9
Q ss_pred eeeeeeccCccchhHHHHHHHhhhc
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
-+-++|-. |.|||+||+.+.+...
T Consensus 52 ~vll~G~~-GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 52 NILMIGPT-GVGKTEIARRLAKLAN 75 (310)
T ss_dssp CEEEECCT-TSSHHHHHHHHHHHHT
T ss_pred eEEEECCC-CCCHHHHHHHHHHHhC
Confidence 34488998 9999999999987663
No 419
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=63.23 E-value=3.2 Score=39.18 Aligned_cols=23 Identities=4% Similarity=-0.328 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-- |-|||||++.+...
T Consensus 31 e~~~i~G~N-GsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPN-GSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCT-TSSHHHHHHHHTTS
T ss_pred EEEEEECCC-CCCHHHHHHHHhCC
Confidence 478899999 99999999999754
No 420
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=63.19 E-value=4.5 Score=40.94 Aligned_cols=24 Identities=0% Similarity=-0.361 Sum_probs=21.3
Q ss_pred CceeeeeeeccCccchhHHHHHHHh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
...+++|+|-- |.|||||++.+..
T Consensus 68 ~~~~valvG~n-GaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGET-GSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECT-TSSHHHHHHHHHT
T ss_pred CCeEEEEECCC-CCcHHHHHHHHhC
Confidence 44589999999 9999999999987
No 421
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=63.11 E-value=9.7 Score=36.71 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=32.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHHHHHHHhhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKKLDQRLLRFLE 282 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~lqk~ll~~L~ 282 (486)
.++-|.|-. |+|||||+.++-.....+ ...+...+.......+..+++....
T Consensus 69 ~l~li~G~p-G~GKTtl~l~ia~~~a~~--g~~vl~~slE~s~~~l~~R~~~~~~ 120 (315)
T 3bh0_A 69 NFVLIAARP-SMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRLIVTAG 120 (315)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHHHHHTT--TCEEEEEESSSCHHHHHHHHHHHHT
T ss_pred cEEEEEeCC-CCCHHHHHHHHHHHHHHc--CCeEEEEECCCCHHHHHHHHHHHHc
Confidence 355578888 999999998876443222 1234555555555556666665443
No 422
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=63.07 E-value=3.5 Score=39.60 Aligned_cols=23 Identities=9% Similarity=-0.227 Sum_probs=20.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..|+|+|-. |.|||||+..+...
T Consensus 9 ~~VaIvG~~-nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRP-NVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSS-SSSHHHHHHHHHTC
T ss_pred CEEEEECCC-CCCHHHHHHHHHCC
Confidence 478999999 99999999998754
No 423
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=62.92 E-value=5.7 Score=39.04 Aligned_cols=26 Identities=4% Similarity=-0.222 Sum_probs=17.2
Q ss_pred CCceeeeeeeccCccchhHHHHHHHh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
+..++|.+.+--||+||||+|-++=.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~ 48 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGV 48 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHH
Confidence 34455666544449999999877643
No 424
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=62.84 E-value=8.8 Score=37.63 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=32.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHHHHHHHhhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKKLDQRLLRFLE 282 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~lqk~ll~~L~ 282 (486)
.++-|.|-. |+||||||.++-..... ....+...+.......+..+++....
T Consensus 47 ~LiiIaG~p-G~GKTt~al~ia~~~a~--~g~~Vl~fSlEms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 47 SLVIIGARP-SMGKTSLMMNMVLSALN--DDRGVAVFSLEMSAEQLALRALSDLT 98 (338)
T ss_dssp CEEEEEECT-TSCHHHHHHHHHHHHHH--TTCEEEEEESSSCHHHHHHHHHHHHH
T ss_pred cEEEEEeCC-CCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHHHHHHhh
Confidence 355577887 99999999888654432 22334555555555556666655443
No 425
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=62.60 E-value=2.3 Score=36.78 Aligned_cols=23 Identities=9% Similarity=-0.325 Sum_probs=9.5
Q ss_pred ceeeeeeeccCccchhHHHHHHHh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
..-|.++|.. |+|||||+..+.+
T Consensus 8 ~~ki~v~G~~-~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDS-GVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCC-CC-----------
T ss_pred ceEEEEECCC-CCCHHHHHHHHHh
Confidence 3457799999 9999999987754
No 426
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=62.58 E-value=3.2 Score=37.10 Aligned_cols=23 Identities=4% Similarity=-0.244 Sum_probs=19.1
Q ss_pred ceeeeeeeccCccchhHHHHHHHh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
..-|.++|.. |+|||||+..+.+
T Consensus 25 ~~ki~vvG~~-~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDS-GVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCT-TSSHHHHHHHHHC
T ss_pred eEEEEEECcC-CCCHHHHHHHHhc
Confidence 3456789999 9999999988865
No 427
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=62.39 E-value=6.7 Score=37.41 Aligned_cols=24 Identities=17% Similarity=-0.151 Sum_probs=20.9
Q ss_pred CceeeeeeeccCccchhHHHHHHHh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
....|+|+|.. |.|||||...+..
T Consensus 23 ~~~~I~vvG~~-~~GKSTlln~l~g 46 (315)
T 1jwy_B 23 DLPQIVVVGSQ-SSGKSSVLENIVG 46 (315)
T ss_dssp CCCEEEEEECS-SSSHHHHHHHHHT
T ss_pred CCCeEEEEcCC-CCCHHHHHHHHHC
Confidence 56678999999 9999999998865
No 428
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=62.25 E-value=3.9 Score=35.52 Aligned_cols=23 Identities=4% Similarity=-0.359 Sum_probs=19.7
Q ss_pred eeeeeeccCccchhHHHHHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+..|+|-- |-|||||+.+++--+
T Consensus 28 ~~~i~G~N-GsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGAN-GSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECT-TSSHHHHHHHHHHHT
T ss_pred cEEEECCC-CCCHHHHHHHHHHHH
Confidence 67799999 999999999996543
No 429
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=62.16 E-value=3.5 Score=39.51 Aligned_cols=24 Identities=8% Similarity=-0.182 Sum_probs=20.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-- |-|||||++.+....
T Consensus 65 e~~~i~G~N-GsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGST-GAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEEST-TSSHHHHHHHHTTSS
T ss_pred CEEEEECCC-CCcHHHHHHHHhcCC
Confidence 578999999 999999999997643
No 430
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=61.94 E-value=3.6 Score=36.96 Aligned_cols=22 Identities=5% Similarity=-0.241 Sum_probs=18.3
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
-|.++|.. |+|||||+..+.+.
T Consensus 29 ki~vvG~~-~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDV-QCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECST-TSSHHHHHHHHHHS
T ss_pred EEEEECcC-CCCHHHHHHHHhcC
Confidence 45689999 99999999887653
No 431
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=61.89 E-value=8.3 Score=34.96 Aligned_cols=23 Identities=0% Similarity=-0.482 Sum_probs=18.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.++.|.|-. |.|||||+.++...
T Consensus 24 ~~~~i~G~~-GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 24 NVVLLSGGP-GTGKTIFSQQFLWN 46 (247)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHH
T ss_pred cEEEEECCC-CCCHHHHHHHHHHH
Confidence 467789999 99999998877543
No 432
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=61.76 E-value=4 Score=40.26 Aligned_cols=25 Identities=4% Similarity=-0.158 Sum_probs=21.6
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.+++|+|-- |.|||||++.+.+...
T Consensus 72 q~~gIiG~n-GaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 72 QRIGIFAGS-GVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHHSC
T ss_pred CEEEEECCC-CCCHHHHHHHHhcCCC
Confidence 478899999 9999999999987653
No 433
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=61.76 E-value=23 Score=35.77 Aligned_cols=54 Identities=7% Similarity=-0.112 Sum_probs=33.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHHHHHHHhhhhcc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKKLDQRLLRFLES 283 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~lqk~ll~~L~~ 283 (486)
.++-|.|-. |+|||||+.++........ ...+.+.+.......+..+++....+
T Consensus 201 ~l~ii~G~p-g~GKT~lal~ia~~~a~~~-g~~vl~~slE~~~~~l~~R~~~~~~~ 254 (444)
T 2q6t_A 201 SLNIIAARP-AMGKTAFALTIAQNAALKE-GVGVGIYSLEMPAAQLTLRMMCSEAR 254 (444)
T ss_dssp CEEEEEECT-TSCHHHHHHHHHHHHHHTT-CCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred cEEEEEeCC-CCCHHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHHHcC
Confidence 356678888 9999999988765543221 22345555555555566676654443
No 434
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=61.62 E-value=4.3 Score=37.66 Aligned_cols=24 Identities=0% Similarity=-0.425 Sum_probs=20.2
Q ss_pred CceeeeeeeccCccchhHHHHHHHh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
....|+++|.. |.|||||...+..
T Consensus 21 ~~~~I~lvG~~-g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKT-GTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECT-TSCHHHHHHHHHT
T ss_pred CceEEEEECCC-CCCHHHHHHHHhC
Confidence 44567899999 9999999988864
No 435
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=61.58 E-value=4 Score=39.37 Aligned_cols=26 Identities=8% Similarity=-0.243 Sum_probs=22.2
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.....|+|+|.. |+|||||...+...
T Consensus 8 ~~~g~v~ivG~~-nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKP-NVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECST-TSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCC-CCcHHHHHHHHhCC
Confidence 456789999999 99999999988763
No 436
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=61.50 E-value=3 Score=39.29 Aligned_cols=21 Identities=0% Similarity=-0.200 Sum_probs=18.3
Q ss_pred eeeeeeccCccchhHHHHHHHh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
-|.++|-. |.|||||+..++.
T Consensus 10 ~I~vvG~~-g~GKSTLin~L~~ 30 (274)
T 3t5d_A 10 TLMVVGES-GLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEECT-TSSHHHHHHHHSS
T ss_pred EEEEECCC-CCCHHHHHHHHhC
Confidence 36799999 9999999998865
No 437
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=61.40 E-value=3.9 Score=40.38 Aligned_cols=25 Identities=4% Similarity=-0.338 Sum_probs=20.7
Q ss_pred eeeeeeccCccchhHHHHHHHhhhcc
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQLMD 254 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~~~ 254 (486)
.+-++|.. |.||||+|+.+.+.+..
T Consensus 74 ~ill~Gp~-GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 74 NILLIGPT-GSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CEEEECCT-TSSHHHHHHHHHHHTTC
T ss_pred CEEEECCC-CCCHHHHHHHHHHHhCC
Confidence 45589999 99999999999887643
No 438
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=61.33 E-value=3.9 Score=39.58 Aligned_cols=24 Identities=8% Similarity=-0.161 Sum_probs=21.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-. |-|||||++.+..-.
T Consensus 127 e~vaIvGps-GsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPP-NTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSS-SSSHHHHHHHHHHHH
T ss_pred CEEEEECCC-CCcHHHHHHHHhhhc
Confidence 578999999 999999999987654
No 439
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=61.02 E-value=2.9 Score=41.98 Aligned_cols=28 Identities=14% Similarity=-0.167 Sum_probs=14.1
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...++|.+++.-||+||||++-++=..+
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~L 136 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHAL 136 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHH
Confidence 4678999996666999999887764433
No 440
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=60.71 E-value=4.4 Score=40.95 Aligned_cols=26 Identities=0% Similarity=-0.233 Sum_probs=21.9
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...+|-++|+. |.||||+|+.+..+.
T Consensus 257 ~~~lIil~G~p-GSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFP-GAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCT-TSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCC-CCCHHHHHHHHHHhc
Confidence 45678899999 999999999987654
No 441
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=60.53 E-value=6.1 Score=38.67 Aligned_cols=27 Identities=4% Similarity=-0.325 Sum_probs=22.5
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..-.+++|+|.. |.|||||++.+...+
T Consensus 53 ~~g~~v~i~G~~-GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVP-GVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCT-TSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCC-CCCHHHHHHHHHHhh
Confidence 345789999999 999999999987543
No 442
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=60.52 E-value=2.8 Score=40.63 Aligned_cols=46 Identities=13% Similarity=-0.036 Sum_probs=28.8
Q ss_pred HHhhccceEEEeecccccChhhHHHHHHHHHH-hcCCCEEEEEEeeecC
Q 011431 71 AIEESKISLVIFSKRFAFSRWCLEELVKIIEC-NKLYQTVIPVFYKVLP 118 (486)
Q Consensus 71 ~I~~s~~~ivv~S~~y~~S~wcl~El~~i~~~-~~~~~~v~Pify~v~~ 118 (486)
++.+....++|++-+....... .|...+-. +..+..++-|+-+.|.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~~~~~~~vivlnK~DL 129 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVEANDIQPIICITKMDL 129 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH--HHHHHHHHHHTTTCEEEEEEECGGG
T ss_pred HHHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHHHCCCCEEEEEECCcc
Confidence 5889999999999875444333 34444433 4455566666655553
No 443
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=60.48 E-value=4.1 Score=42.77 Aligned_cols=28 Identities=4% Similarity=-0.333 Sum_probs=22.9
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhccc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLMDN 255 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~~~ 255 (486)
-..+.++|-. |.||||||+.+.+.....
T Consensus 108 g~~vll~Gp~-GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 108 GPILCLAGPP-GVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp SCEEEEESSS-SSSHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCC-CCCHHHHHHHHHHhcCCC
Confidence 4567899999 999999999998876433
No 444
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=60.37 E-value=3.4 Score=40.01 Aligned_cols=23 Identities=4% Similarity=-0.253 Sum_probs=20.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-. |-|||||++.+..-
T Consensus 81 e~vaivG~s-GsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPS-GAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSS-CHHHHHHHHHHTTS
T ss_pred CEEEEECCC-CchHHHHHHHHHcC
Confidence 578999999 99999999998653
No 445
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=59.88 E-value=4 Score=39.31 Aligned_cols=21 Identities=5% Similarity=-0.309 Sum_probs=18.7
Q ss_pred eeeeeeeccCccchhHHHHHHH
Q 011431 228 RSYRCWLLCPLFSELRVLTNDV 249 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy 249 (486)
.+++++|.. |.|||||++.+.
T Consensus 166 ~i~~l~G~s-G~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPS-GVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECST-TSSHHHHHHHHH
T ss_pred cEEEEECCC-CCCHHHHHHHHH
Confidence 467899999 999999999986
No 446
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=59.68 E-value=3 Score=39.04 Aligned_cols=26 Identities=0% Similarity=-0.328 Sum_probs=21.5
Q ss_pred CceeeeeeeccCccchhHHHHHHHhhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
....|.|-|.- |.||||+++.+-+.+
T Consensus 23 ~~~~I~ieG~~-GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNI-AAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECST-TSSHHHHHTTTGGGC
T ss_pred CceEEEEECCC-CCCHHHHHHHHHHhc
Confidence 44678899999 999999998886654
No 447
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=59.50 E-value=4.1 Score=40.25 Aligned_cols=25 Identities=0% Similarity=-0.263 Sum_probs=20.8
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...++|+|-. |-|||||++.+....
T Consensus 170 g~k~~IvG~n-GsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGE-SSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCT-TSHHHHHHHHHHHHT
T ss_pred hCeEEEECCC-CCCHHHHHHHHHHHh
Confidence 3578899999 999999999886543
No 448
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=59.43 E-value=6.1 Score=39.08 Aligned_cols=110 Identities=8% Similarity=-0.064 Sum_probs=57.9
Q ss_pred eeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHHHHHHHhhhhcccccccccccccccccccccccccCc
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKKLDQRLLRFLESVDKHVASYDRYGSASFEQPRPQTTS 308 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~lqk~ll~~L~~~d~~~~~~~~~g~~s~l~~~L~~tK 308 (486)
+++|.|-- |-|||||++.+.+.+....... +. .....+..........+.... ... .......-|...|.. .
T Consensus 125 ~i~I~Gpt-GSGKTTlL~~l~g~~~~~~~~~-i~--t~ed~~e~~~~~~~~~v~q~~--~~~-~~~~~~~~La~aL~~-~ 196 (356)
T 3jvv_A 125 LVLVTGPT-GSGKSTTLAAMLDYLNNTKYHH-IL--TIEDPIEFVHESKKCLVNQRE--VHR-DTLGFSEALRSALRE-D 196 (356)
T ss_dssp EEEEECST-TSCHHHHHHHHHHHHHHHCCCE-EE--EEESSCCSCCCCSSSEEEEEE--BTT-TBSCHHHHHHHHTTS-C
T ss_pred EEEEECCC-CCCHHHHHHHHHhcccCCCCcE-EE--EccCcHHhhhhccccceeeee--ecc-ccCCHHHHHHHHhhh-C
Confidence 88899999 9999999999876543221111 11 111111000000000000000 000 011122345566666 6
Q ss_pred ceeeceecccCHHHHHHHhcCCCCCCCCCEEEeeCCccccc
Q 011431 309 AAHPYVEDVIDDAYMEDITDDSSPSLNLSRINSTSRFEQLW 349 (486)
Q Consensus 309 r~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIIiTTR~~~V~ 349 (486)
--+|++|..-+...+..+... ...|--||+||-+.+.+
T Consensus 197 PdvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred cCEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 778899999887776655432 12366799999887765
No 449
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=59.37 E-value=4.5 Score=39.76 Aligned_cols=25 Identities=4% Similarity=-0.326 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
..+-++|-. |.|||++|+++.+...
T Consensus 52 ~~vll~Gpp-GtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 52 SNILLIGPT-GSGKTLLAETLARLLD 76 (363)
T ss_dssp CCEEEECCT-TSSHHHHHHHHHHHTT
T ss_pred CeEEEECCC-CCCHHHHHHHHHHHcC
Confidence 346689999 9999999999988763
No 450
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=59.30 E-value=4.5 Score=38.90 Aligned_cols=23 Identities=9% Similarity=-0.249 Sum_probs=19.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..|+|+|-. |+|||||+..+...
T Consensus 8 g~V~ivG~~-nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKP-NVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECST-TSSHHHHHHHHHTS
T ss_pred CEEEEECCC-CCCHHHHHHHHhCC
Confidence 458899999 99999999998763
No 451
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=59.17 E-value=4 Score=36.93 Aligned_cols=21 Identities=0% Similarity=-0.458 Sum_probs=17.8
Q ss_pred eeeeeeeccCccchhHHHHHHH
Q 011431 228 RSYRCWLLCPLFSELRVLTNDV 249 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy 249 (486)
..|.++|-+ |+|||||+....
T Consensus 38 ~kVvlvG~~-~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQ-GVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCT-TSSHHHHHHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHH
Confidence 457799999 999999998764
No 452
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=59.16 E-value=3.6 Score=36.94 Aligned_cols=23 Identities=0% Similarity=-0.395 Sum_probs=18.3
Q ss_pred eeeeeeeccCccchhHHHHH-HHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTN-DVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~-vy~~ 251 (486)
--|.++|.. |+|||||+.. +.+.
T Consensus 16 ~ki~v~G~~-~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 16 FKLVLVGDG-GTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEEECT-TSSHHHHHTTBHHHH
T ss_pred eEEEEECCC-CCCHHHHHHHHHcCC
Confidence 346799999 9999999988 4444
No 453
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=59.14 E-value=4.1 Score=37.80 Aligned_cols=25 Identities=8% Similarity=-0.291 Sum_probs=20.3
Q ss_pred CceeeeeeeccCccchhHHHHHHHhh
Q 011431 226 GYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 226 ~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
...-|.++|.. |+|||||+..+...
T Consensus 20 ~~l~I~lvG~~-g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRT-GAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESST-TSSHHHHHHHHHTS
T ss_pred CceEEEEECCC-CCcHHHHHHHHhCC
Confidence 34456799999 99999999988753
No 454
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=59.00 E-value=3.6 Score=35.79 Aligned_cols=23 Identities=9% Similarity=-0.298 Sum_probs=18.8
Q ss_pred ceeeeeeeccCccchhHHHHHHHh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
..-|.++|.. |+|||||+..+.+
T Consensus 22 ~~~i~v~G~~-~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLD-NAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEET-TSSHHHHHHHTCC
T ss_pred ceEEEEECCC-CCCHHHHHHHHHc
Confidence 3457799999 9999999988743
No 455
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=58.99 E-value=4.5 Score=41.75 Aligned_cols=24 Identities=0% Similarity=-0.468 Sum_probs=20.4
Q ss_pred eeeeeccCccchhHHHHHHHhhhcc
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQLMD 254 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~~~ 254 (486)
+-++|.. |.||||||+++.+....
T Consensus 52 vLL~Gpp-GtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 52 ILLVGPP-GTGKTLLARAVAGEANV 75 (476)
T ss_dssp EEEECCT-TSSHHHHHHHHHHHHTC
T ss_pred EEEECCC-CCCHHHHHHHHHHHcCC
Confidence 5589999 99999999999886643
No 456
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=58.90 E-value=4.8 Score=37.68 Aligned_cols=23 Identities=0% Similarity=-0.305 Sum_probs=19.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
+.|.++|-. |.|||||+..+...
T Consensus 2 ~kI~lvG~~-n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNP-NCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEEST-TSSHHHHHHHHHTT
T ss_pred CEEEEECCC-CCCHHHHHHHHHCC
Confidence 457899999 99999999988654
No 457
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=58.87 E-value=4.3 Score=40.40 Aligned_cols=22 Identities=5% Similarity=-0.170 Sum_probs=19.4
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.|+|+|.. |+|||||++.+.+.
T Consensus 3 ~v~IVG~p-nvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLP-NVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCS-SSSHHHHHHHHHHH
T ss_pred EEEEECCC-CCCHHHHHHHHhCC
Confidence 47899999 99999999998764
No 458
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=58.81 E-value=4.7 Score=39.60 Aligned_cols=25 Identities=4% Similarity=-0.197 Sum_probs=21.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
++|-|+|.- |.|||||+..+-.++.
T Consensus 41 ~lIvI~GPT-gsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGAT-GTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECST-TSSHHHHHHHHHTTSC
T ss_pred ceEEEECCC-CCCHHHHHHHHHHHCC
Confidence 477899999 9999999999877653
No 459
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=58.66 E-value=3.6 Score=40.74 Aligned_cols=21 Identities=0% Similarity=-0.224 Sum_probs=18.4
Q ss_pred eeeeeccCccchhHHHHHHHhh
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~ 251 (486)
|.++|-. |+|||||+..++..
T Consensus 40 I~vvG~~-g~GKSTLln~L~~~ 60 (361)
T 2qag_A 40 LMVVGES-GLGKSTLINSLFLT 60 (361)
T ss_dssp EEECCCT-TSCHHHHHHHHTTC
T ss_pred EEEEcCC-CCCHHHHHHHHhCC
Confidence 5799999 99999999998763
No 460
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=58.66 E-value=4.4 Score=40.19 Aligned_cols=26 Identities=4% Similarity=-0.201 Sum_probs=21.3
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.++++|+|+|-. |.|||||.+.+.+.
T Consensus 177 ~~~~~V~lvG~~-naGKSTLln~L~~~ 202 (364)
T 2qtf_A 177 NNIPSIGIVGYT-NSGKTSLFNSLTGL 202 (364)
T ss_dssp --CCEEEEECBT-TSSHHHHHHHHHCC
T ss_pred cCCcEEEEECCC-CCCHHHHHHHHHCC
Confidence 367779999999 99999999988654
No 461
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=58.55 E-value=2.5 Score=37.29 Aligned_cols=23 Identities=0% Similarity=-0.210 Sum_probs=4.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
--|.++|.. |+|||||+..+.+.
T Consensus 21 ~~i~v~G~~-~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEA-TVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC------------------
T ss_pred eEEEEECCC-CCCHHHHHHHHHhC
Confidence 346789999 99999999877543
No 462
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=58.46 E-value=4.4 Score=42.66 Aligned_cols=25 Identities=12% Similarity=-0.168 Sum_probs=21.8
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
.++.+.|+. |-|||||++.+...+.
T Consensus 370 ~iI~LiG~s-GSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLS-GAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESS-CHHHHHHHHHHHHHHH
T ss_pred eEEEEECCC-CChHHHHHHHHHHhhc
Confidence 578899999 9999999999977653
No 463
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=58.23 E-value=4.4 Score=41.16 Aligned_cols=21 Identities=5% Similarity=-0.035 Sum_probs=19.2
Q ss_pred eeeeeccCccchhHHHHHHHhh
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~ 251 (486)
++|+|-. |.|||||++.++..
T Consensus 45 vaLvG~n-GaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGET-GLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECST-TSSSHHHHHHHHTS
T ss_pred EEEECCC-CCCHHHHHHHHhCc
Confidence 8899999 99999999999764
No 464
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=58.10 E-value=4.5 Score=36.42 Aligned_cols=24 Identities=4% Similarity=-0.240 Sum_probs=19.5
Q ss_pred ceeeeeeeccCccchhHHHHHHHhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
..-|.++|-. |+|||||+..+.+.
T Consensus 13 ~~ki~v~G~~-~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDS-GVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCT-TSSHHHHHHHHHHC
T ss_pred eeEEEEECcC-CCCHHHHHHHHhcC
Confidence 3456789999 99999999888653
No 465
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=57.74 E-value=4.9 Score=41.71 Aligned_cols=45 Identities=4% Similarity=-0.069 Sum_probs=29.4
Q ss_pred CCCEEEeeCCcccccccccc---CCCceEecCCCCCchhhhhhcccCC
Q 011431 335 NLSRINSTSRFEQLWPETIS---ATDTCTEDVTVDNSPSLNLSSCNSS 379 (486)
Q Consensus 335 ~GSrIIiTTR~~~V~~~~~~---~~~~~y~v~~L~~~es~~LF~~~a~ 379 (486)
.+..||.||..-+++..... .-+..+++...+.++-.+++..++.
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 35567777777766532211 1345778888888888888877654
No 466
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=57.73 E-value=4.7 Score=37.51 Aligned_cols=23 Identities=0% Similarity=-0.506 Sum_probs=19.3
Q ss_pred eeeeeccCccchhHHHHHHHhhhc
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQLM 253 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~~ 253 (486)
+=|+|-. |.|||+||+.+++...
T Consensus 32 vll~G~~-GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 32 VLIIGER-GTGKELIASRLHYLSS 54 (265)
T ss_dssp EEEECCT-TSCHHHHHHHHHHTST
T ss_pred EEEECCC-CCcHHHHHHHHHHhcC
Confidence 4488998 9999999999987653
No 467
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=57.70 E-value=5 Score=39.58 Aligned_cols=27 Identities=7% Similarity=-0.193 Sum_probs=19.8
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+.+++-+-|-| |+||||+|-++-..+
T Consensus 16 ~~~~i~~~~gkG-GvGKTt~a~~lA~~l 42 (348)
T 3io3_A 16 DSLKWIFVGGKG-GVGKTTTSSSVAVQL 42 (348)
T ss_dssp TTCSEEEEECST-TSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCC-CCcHHHHHHHHHHHH
Confidence 345676677877 999999987765433
No 468
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=57.59 E-value=4.9 Score=39.29 Aligned_cols=22 Identities=0% Similarity=-0.411 Sum_probs=18.5
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
++-|+|.. |.||||||.++-..
T Consensus 125 viLI~GpP-GsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKG-NSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSC-SSSHHHHHHHHHHH
T ss_pred EEEEEcCC-CCCHHHHHHHHHHh
Confidence 44589999 99999999998654
No 469
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=57.20 E-value=4.6 Score=39.98 Aligned_cols=24 Identities=8% Similarity=-0.240 Sum_probs=20.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++++|.. |.|||||++.+....
T Consensus 216 ~~~~lvG~s-G~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQS-GVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCT-TSSHHHHHHHHHCCS
T ss_pred CEEEEECCC-CccHHHHHHHHhccc
Confidence 367899999 999999999886543
No 470
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=56.71 E-value=4.8 Score=40.01 Aligned_cols=22 Identities=5% Similarity=-0.188 Sum_probs=19.8
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
.+++|+|-. |-|||||++.+..
T Consensus 55 ei~~IiGpn-GaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGAS-GAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCT-TSSHHHHHHHHHT
T ss_pred CEEEEEcCC-CchHHHHHHHHhc
Confidence 578999999 9999999999865
No 471
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=56.49 E-value=5.4 Score=40.04 Aligned_cols=23 Identities=0% Similarity=-0.286 Sum_probs=20.5
Q ss_pred ceeeeeeeccCccchhHHHHHHHh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
-..+||+|.. |.|||||.+.+..
T Consensus 20 g~~vgiVG~p-naGKSTL~n~Ltg 42 (392)
T 1ni3_A 20 NLKTGIVGMP-NVGKSTFFRAITK 42 (392)
T ss_dssp CCEEEEEECS-SSSHHHHHHHHHH
T ss_pred CCEEEEECCC-CCCHHHHHHHHHC
Confidence 3578999999 9999999999976
No 472
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=56.29 E-value=5.3 Score=39.33 Aligned_cols=24 Identities=0% Similarity=-0.247 Sum_probs=20.9
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.++.|+|-. |.|||||+..+....
T Consensus 132 ~i~~I~G~~-GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEF-GSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEEST-TSSHHHHHHHHHHHT
T ss_pred eEEEEECCC-CCCHHHHHHHHHHHh
Confidence 688899999 999999999987654
No 473
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=56.01 E-value=5.5 Score=36.86 Aligned_cols=24 Identities=0% Similarity=-0.438 Sum_probs=20.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
..+|+.|+. |.||||+++.+-+..
T Consensus 9 ~~~~~~G~p-GsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAP-GAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCT-TSCHHHHHHHHHHHH
T ss_pred cceeeECCC-CCCHHHHHHHHHHHh
Confidence 457899999 999999999886654
No 474
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=56.00 E-value=5.4 Score=37.75 Aligned_cols=22 Identities=0% Similarity=-0.371 Sum_probs=19.2
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
..|+++|-. |+|||||...+..
T Consensus 4 ~kI~lvG~~-nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNP-NSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHC
T ss_pred eEEEEECCC-CCCHHHHHHHHHC
Confidence 457899999 9999999998865
No 475
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=55.74 E-value=4.5 Score=40.98 Aligned_cols=22 Identities=0% Similarity=-0.274 Sum_probs=19.0
Q ss_pred eeeeeccCccchhHHHHHHHhhh
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
|+|+|-. |.|||||++.+....
T Consensus 34 I~lvG~s-GaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGES-GLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCT-TSSHHHHHHHHTTCC
T ss_pred EEEECCC-CCcHHHHHHHHhCCC
Confidence 4899999 999999999987643
No 476
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=55.36 E-value=5.3 Score=39.65 Aligned_cols=22 Identities=5% Similarity=-0.176 Sum_probs=19.3
Q ss_pred eeeeeeccCccchhHHHHHHHhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.|+|+|.. |+|||||...+.+.
T Consensus 4 kI~IVG~p-nvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLP-NVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCT-TSSHHHHHHHHHHT
T ss_pred EEEEECCC-CCCHHHHHHHHHCC
Confidence 47899999 99999999998763
No 477
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=55.29 E-value=5.1 Score=41.49 Aligned_cols=23 Identities=4% Similarity=-0.275 Sum_probs=18.6
Q ss_pred eeeeeeccCccchhHHH-HHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVL-TNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa-~~vy~~~ 252 (486)
-++|.|-. |+|||+|| ..+.|+.
T Consensus 177 R~~I~g~~-g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 177 RELIIGDR-QTGKTAIAIDTIINQK 200 (515)
T ss_dssp BEEEEEET-TSSHHHHHHHHHHTTT
T ss_pred EEEEEcCC-CCCccHHHHHHHHHhh
Confidence 45799998 99999995 5777765
No 478
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=55.28 E-value=5.8 Score=38.63 Aligned_cols=25 Identities=4% Similarity=-0.310 Sum_probs=16.7
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
+.|.+.+-.||+||||++-++--.+
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~l 43 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQM 43 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 4445554444999999988775444
No 479
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=55.24 E-value=9.6 Score=38.82 Aligned_cols=50 Identities=16% Similarity=0.031 Sum_probs=30.6
Q ss_pred eeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHHHHHHHhhhh
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKKLDQRLLRFL 281 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~lqk~ll~~L 281 (486)
++-|.|-. |+||||||.++......+ ...+...+.......+..+++...
T Consensus 199 liiIaG~p-G~GKTtlal~ia~~~a~~--g~~vl~fSlEms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 199 FVLIAARP-SMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRLIVTA 248 (444)
T ss_dssp EEEEEECS-SSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHHHHHHHHH
T ss_pred EEEEEeCC-CCChHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHHH
Confidence 45577777 999999998886654333 223455555444444556665443
No 480
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=54.98 E-value=5.3 Score=38.53 Aligned_cols=24 Identities=0% Similarity=-0.326 Sum_probs=19.6
Q ss_pred eeeeeccCccchhHHHHHHHhhhcc
Q 011431 230 YRCWLLCPLFSELRVLTNDVHQLMD 254 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~~~~~ 254 (486)
+-++|-. |.|||+||+.+.+.+..
T Consensus 49 vll~G~p-GtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 49 ILLEGVP-GLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp EEEESCC-CHHHHHHHHHHHHHTTC
T ss_pred EEEECCC-CCcHHHHHHHHHHHhCC
Confidence 4478888 99999999999876643
No 481
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=54.92 E-value=5.4 Score=41.22 Aligned_cols=23 Identities=4% Similarity=-0.269 Sum_probs=18.6
Q ss_pred eeeeeeccCccchhHHH-HHHHhhh
Q 011431 229 SYRCWLLCPLFSELRVL-TNDVHQL 252 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa-~~vy~~~ 252 (486)
-++|.|-. |+|||+|| ..+.|+.
T Consensus 164 R~~Ifg~~-g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 164 RELIIGDR-QTGKTTIAIDTIINQK 187 (502)
T ss_dssp BCEEEECS-SSCHHHHHHHHHHGGG
T ss_pred EEEEECCC-CCCchHHHHHHHHHhh
Confidence 45799988 99999994 5777765
No 482
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=54.91 E-value=5.3 Score=38.32 Aligned_cols=23 Identities=9% Similarity=-0.187 Sum_probs=19.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++++|.. |.|||||++.+...
T Consensus 170 eiv~l~G~s-G~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLS-GVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECST-TSSHHHHHHHHSTT
T ss_pred CeEEEECCC-CCcHHHHHHHhccc
Confidence 367899999 99999999988543
No 483
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=54.72 E-value=10 Score=41.44 Aligned_cols=38 Identities=8% Similarity=-0.064 Sum_probs=25.8
Q ss_pred hHHHHHHHhhcCCCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 213 LLDEVLSLLRNAEGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 213 ~l~~v~~ll~~~~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.++.+...+....... +=++|-. |+||||+|+.+.+.+
T Consensus 188 ~i~~l~~~l~~~~~~~-vLL~G~p-GtGKT~la~~la~~l 225 (758)
T 3pxi_A 188 EIQRVIEVLSRRTKNN-PVLIGEP-GVGKTAIAEGLAQQI 225 (758)
T ss_dssp HHHHHHHHHHCSSSCE-EEEESCT-TTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCC-eEEECCC-CCCHHHHHHHHHHHH
Confidence 3444555554332323 3489999 999999999998775
No 484
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=54.71 E-value=6.5 Score=38.24 Aligned_cols=24 Identities=4% Similarity=-0.166 Sum_probs=20.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+|.|.|.- |.|||||+..+...+
T Consensus 4 ~~i~i~Gpt-gsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPT-AVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCT-TSCHHHHHHHHHHTT
T ss_pred cEEEEECCC-cCCHHHHHHHHHHhC
Confidence 467789999 999999999987654
No 485
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=54.68 E-value=5.5 Score=39.35 Aligned_cols=24 Identities=4% Similarity=-0.132 Sum_probs=20.5
Q ss_pred eeeeeeeccCccchhHHHHHHHhhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
.+++|+|-- |-|||||++.+...+
T Consensus 176 ~~i~ivG~s-GsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGET-GSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESS-SSCHHHHHHHHHTTS
T ss_pred CEEEEECCC-CCCHHHHHHHHHhcC
Confidence 468899999 999999999997654
No 486
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=54.14 E-value=6.3 Score=38.74 Aligned_cols=26 Identities=4% Similarity=-0.296 Sum_probs=21.7
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+...++++|.. |+|||||+..+...
T Consensus 165 ~~~~~v~lvG~~-gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHP-NVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECST-TSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCC-CCCHHHHHHHHhCC
Confidence 355678999999 99999999988653
No 487
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=54.01 E-value=5.6 Score=39.33 Aligned_cols=23 Identities=4% Similarity=-0.312 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-. |-|||||++.+..-
T Consensus 42 e~~~llGpn-GsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPS-GSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECST-TSSHHHHHHHHHTS
T ss_pred CEEEEECCC-CCcHHHHHHHHhCC
Confidence 478899999 99999999998753
No 488
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=53.69 E-value=16 Score=36.71 Aligned_cols=44 Identities=5% Similarity=-0.056 Sum_probs=29.0
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhccccccceEEEEeeeccHHH
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMDNYENSDVTLAKFEGEVKK 272 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~~F~~~~~~~v~~~~~l~~ 272 (486)
+.++|+|-. |.|||||+..+-+.+..+.....++.+.+.+....
T Consensus 176 QR~lIfg~~-g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~E 219 (427)
T 3l0o_A 176 QRGMIVAPP-KAGKTTILKEIANGIAENHPDTIRIILLIDERPEE 219 (427)
T ss_dssp CEEEEEECT-TCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHH
T ss_pred ceEEEecCC-CCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcch
Confidence 356799998 99999999988887654333222344555555433
No 489
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=53.36 E-value=7.9 Score=34.89 Aligned_cols=25 Identities=12% Similarity=-0.109 Sum_probs=20.5
Q ss_pred eeeeeeccCccchhHHHHHHHhhhcc
Q 011431 229 SYRCWLLCPLFSELRVLTNDVHQLMD 254 (486)
Q Consensus 229 vi~I~GmGgGvGKTTLa~~vy~~~~~ 254 (486)
.|.+=|.= |.||||+++.+.+.+..
T Consensus 4 FI~~EG~d-GsGKsTq~~~L~~~L~~ 28 (205)
T 4hlc_A 4 FITFEGPE-GSGKTTVINEVYHRLVK 28 (205)
T ss_dssp EEEEECCT-TSCHHHHHHHHHHHHTT
T ss_pred EEEEECCC-CCcHHHHHHHHHHHHHC
Confidence 46677887 99999999999887754
No 490
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=53.24 E-value=7.8 Score=34.73 Aligned_cols=26 Identities=4% Similarity=-0.423 Sum_probs=22.3
Q ss_pred eeeeeeeccCccchhHHHHHHHhhhcc
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQLMD 254 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~~~~ 254 (486)
.+|.|-|+- |-||||+++.+-.++.-
T Consensus 7 ~iI~i~g~~-GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREF-GSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECT-TSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCC-CCCHHHHHHHHHHHhCc
Confidence 589999999 99999999999777643
No 491
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=58.37 E-value=2.8 Score=37.09 Aligned_cols=22 Identities=5% Similarity=-0.266 Sum_probs=17.7
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
--|.++|.. |+|||||+..+.+
T Consensus 31 ~ki~v~G~~-~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDG-AVGKTCLLISYTT 52 (204)
Confidence 345689999 9999999977654
No 492
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=53.04 E-value=6.1 Score=39.12 Aligned_cols=23 Identities=4% Similarity=-0.318 Sum_probs=20.2
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-. |-|||||++.+..-
T Consensus 31 e~~~llGps-GsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGAS-GCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEEST-TSSHHHHHHHHHTS
T ss_pred CEEEEECCC-CchHHHHHHHHhcC
Confidence 578899999 99999999998753
No 493
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=52.96 E-value=6.5 Score=38.77 Aligned_cols=25 Identities=4% Similarity=-0.246 Sum_probs=17.0
Q ss_pred ceeeeee-eccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCW-LLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~-GmGgGvGKTTLa~~vy~~~ 252 (486)
.++|.++ |-| |+||||++-++=-.+
T Consensus 17 ~~~i~v~sgKG-GvGKTTvaanLA~~l 42 (354)
T 2woj_A 17 THKWIFVGGKG-GVGKTTSSCSIAIQM 42 (354)
T ss_dssp SCCEEEEEEST-TSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCC-CCcHHHHHHHHHHHH
Confidence 3455565 555 999999887764443
No 494
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=52.87 E-value=6 Score=39.19 Aligned_cols=23 Identities=4% Similarity=-0.354 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-. |-|||||++.+..-
T Consensus 30 e~~~llGpn-GsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPS-GCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECST-TSSHHHHHHHHHTS
T ss_pred CEEEEEcCC-CchHHHHHHHHHCC
Confidence 478899999 99999999999753
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=52.68 E-value=7.4 Score=35.73 Aligned_cols=27 Identities=4% Similarity=-0.380 Sum_probs=22.4
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhhcc
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQLMD 254 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~~~ 254 (486)
-..|.+-|+- |.||||+++.+.+.+..
T Consensus 21 ~~~i~~~G~~-g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGID-GSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECST-TSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCC-CCCHHHHHHHHHHHHhh
Confidence 3567788999 99999999999877644
No 496
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=52.67 E-value=8.2 Score=35.25 Aligned_cols=27 Identities=4% Similarity=-0.324 Sum_probs=22.1
Q ss_pred CCceeeeeeeccCccchhHHHHHHHhhh
Q 011431 225 EGYRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 225 ~~~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
...++|-|.|.. |.||+|.|+.+-++.
T Consensus 27 ~k~kiI~llGpP-GsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGP-GSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCT-TCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCC-CCCHHHHHHHHHHHH
Confidence 456788888998 999999999886653
No 497
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=52.55 E-value=6.5 Score=35.72 Aligned_cols=20 Identities=5% Similarity=-0.208 Sum_probs=16.3
Q ss_pred eeeeeccCccchhHHHHHHHh
Q 011431 230 YRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 230 i~I~GmGgGvGKTTLa~~vy~ 250 (486)
|-++|-+ |+|||+|+....+
T Consensus 16 ivlvGd~-~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQ-SVGKTSLITRFMY 35 (216)
T ss_dssp EEEECST-TSSHHHHHHHHHH
T ss_pred EEEECcC-CcCHHHHHHHHHh
Confidence 4588999 9999999976543
No 498
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=52.45 E-value=6.4 Score=36.79 Aligned_cols=22 Identities=0% Similarity=-0.328 Sum_probs=19.0
Q ss_pred eeeeeeeccCccchhHHHHHHHh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVH 250 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~ 250 (486)
..|.++|-. |+|||||+..+..
T Consensus 6 ~kI~lvG~~-nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCP-NVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCT-TSSHHHHHHHHHT
T ss_pred eEEEEECCC-CCCHHHHHHHHHC
Confidence 457899999 9999999998865
No 499
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=52.44 E-value=6.1 Score=39.32 Aligned_cols=23 Identities=4% Similarity=-0.344 Sum_probs=20.1
Q ss_pred eeeeeeeccCccchhHHHHHHHhh
Q 011431 228 RSYRCWLLCPLFSELRVLTNDVHQ 251 (486)
Q Consensus 228 ~vi~I~GmGgGvGKTTLa~~vy~~ 251 (486)
.+++|+|-. |-|||||++.+..-
T Consensus 30 e~~~llGpn-GsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPS-GCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECST-TSSHHHHHHHHHTS
T ss_pred CEEEEECCC-CcHHHHHHHHHHcC
Confidence 478899999 99999999998753
No 500
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=52.42 E-value=7.1 Score=38.78 Aligned_cols=25 Identities=0% Similarity=-0.249 Sum_probs=21.2
Q ss_pred ceeeeeeeccCccchhHHHHHHHhhh
Q 011431 227 YRSYRCWLLCPLFSELRVLTNDVHQL 252 (486)
Q Consensus 227 ~~vi~I~GmGgGvGKTTLa~~vy~~~ 252 (486)
-.+++|+|-- |.|||||++.+...+
T Consensus 136 g~~i~ivG~~-GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPT-GSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSS-SSSHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CCCHHHHHHHHHhhc
Confidence 3578899999 999999999987654
Done!