Query 011432
Match_columns 486
No_of_seqs 179 out of 356
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 01:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2674 Cysteine protease requ 100.0 4E-111 8E-116 862.5 29.3 359 68-445 3-373 (409)
2 PF03416 Peptidase_C54: Peptid 100.0 3.2E-99 7E-104 754.8 22.2 274 136-426 2-278 (278)
3 PF07910 Peptidase_C78: Peptid 97.9 1.2E-05 2.5E-10 79.1 4.9 47 327-374 123-185 (218)
4 KOG2433 Uncharacterized conser 96.8 0.0053 1.1E-07 65.2 9.4 69 164-255 402-473 (577)
5 KOG2674 Cysteine protease requ 93.7 0.0062 1.4E-07 64.7 -3.5 132 57-256 75-206 (409)
6 KOG4696 Uncharacterized conser 90.6 0.19 4.1E-06 51.9 2.9 40 148-187 171-214 (393)
7 KOG4696 Uncharacterized conser 76.2 1.4 3E-05 45.8 1.5 22 165-186 124-145 (393)
8 PF13529 Peptidase_C39_2: Pept 42.0 30 0.00065 29.5 3.4 30 340-369 114-144 (144)
9 PF15644 Tox-PL: Papain fold t 37.9 28 0.00061 30.5 2.6 24 346-370 84-107 (111)
10 cd01245 PH_RasGAP_CG5898 RAS G 37.5 1.2E+02 0.0026 26.5 6.4 76 350-427 16-97 (98)
11 cd02549 Peptidase_C39A A sub-f 34.7 62 0.0013 28.1 4.3 26 345-370 89-115 (141)
12 KOG2944 Glyoxalase [Carbohydra 22.7 57 0.0012 31.4 2.0 75 351-428 59-136 (170)
13 cd03073 PDI_b'_ERp72_ERp57 PDI 20.3 1.9E+02 0.0042 25.4 4.8 38 407-444 18-60 (111)
No 1
>KOG2674 consensus Cysteine protease required for autophagy - Apg4p/Aut2p [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-111 Score=862.49 Aligned_cols=359 Identities=42% Similarity=0.792 Sum_probs=323.0
Q ss_pred cccccccCCChhHHHHHHh-hcchHHHHHHHhhCCCCCCCCCCCCcEEEcCeeecCCCcccccccCCCcchHHHHhhccc
Q 011432 68 KKAVHNKSNGWTAAVKRLV-TAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNGLAEFNQDFSS 146 (486)
Q Consensus 68 ~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pvwlLG~~Y~~~~~~~~~~~~~~~~~~~f~~Df~S 146 (486)
++.+++..+.|+.++++++ .++..++++++++.+..++++..+++||+||++|.+..++. ++|++||.|
T Consensus 3 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lg~~y~is~~~~----------e~f~~D~~S 72 (409)
T KOG2674|consen 3 HSIVCTTRQSWTLFVKTLGEASSHIRFLGKTVLFAELENIESGGEDVWILGRRYKISTEES----------EEFLSDVSS 72 (409)
T ss_pred ccchhhhhhhHHHHHHHHHhhhhhhhhhhheecccccccCCCCCcceEEEeeeeeeccCHH----------HHHHHhhhh
Confidence 5667889999999999984 45567777888899999999999999999999999987641 899999999
Q ss_pred cEEEeecCCCCCCCCCcccccCCccccccchhhHHHHHHHHhhhCCCCcCCCCCCCcHHHHHHhhhcCCCCCCCchhhHH
Q 011432 147 RILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNL 226 (486)
Q Consensus 147 riWfTYRk~F~pI~~s~~TSD~GWGCMLRsgQMLLAqAL~~h~LGRdwr~~~~~~~~~e~~~IL~lF~D~~~aPFSIH~i 226 (486)
|||||||++|+||+++++|||+|||||||||||||||||+++||||+|+|+..++.+++|.+||++|.|.|.+|||||||
T Consensus 73 riw~TYR~~F~pig~t~~ttD~GWGCMlR~gQMllaqaL~~~~lGRdw~w~~~~~~~~~y~~il~~F~D~~~a~~SiHq~ 152 (409)
T KOG2674|consen 73 RLWFTYRRGFSPIGGTGPTTDCGWGCMLRCGQMLLAQALICRHLGRDWRWTDEKRLEEEYLKILNLFEDEPDAPFSIHQI 152 (409)
T ss_pred cceeeccCCCCcccCCCcccCcceeeEEehhHHHHHHHHHHhhcccccccccccccchHHHHHHHhhcCCCccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHcCCCCccccChhHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeeC--------CCCCCCCCCceEecccccccc
Q 011432 227 LQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSG--------DEDGERGGAPVVCIDDASRHC 298 (486)
Q Consensus 227 v~~G~~~gk~pGeWfGPs~~a~~i~~L~~~~~~~~~~~~~~~~l~vyv~s~--------~~dge~g~~~vv~~dd~~~~c 298 (486)
+++|...||++|+||||+++|+++++|.... .+.+.++||+.+ .+...+++.+++++.+..+.|
T Consensus 153 ~~~G~~~~~~~g~WfGP~~~a~~~~~L~~~~--------~~~~~~~~v~~~~~vv~~d~~~~~~~~~~~~~~~~~~~~~~ 224 (409)
T KOG2674|consen 153 VQMGVGEGKAVGSWFGPNTVAQVLKKLARFD--------PWSSLAVYVAMDNAVIIRDIVEKCRRGPLPALTIEDATKQS 224 (409)
T ss_pred HHHHhhccCCCccccCCcHHHHHHHHhhccC--------CCCCccEEEecccceEEeeeehhcccCCcccceecccchhh
Confidence 9999999999999999999999999998753 234556666543 344566778888888888888
Q ss_pred ccccCCCCCCccEEEEEeeeecCCCCCcchHHHHHHHhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcccccccC
Q 011432 299 SVFSKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQPVINIG 378 (486)
Q Consensus 299 ~~~~~~~~~w~plLlLIPlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~SlYFvG~q~d~LiYLDPH~vQ~av~~~ 378 (486)
.++..+..+|+|||||||||||++.|||.|+++||++|++||||||+||||+||+||||||||+|||||||+||++|+++
T Consensus 225 ~~~~~~~~ewkpllLLVPvRLG~~~iNp~Yvp~lk~~f~~~q~lGI~GGkP~~S~YFvGyq~d~l~YLDPH~~Q~~V~vs 304 (409)
T KOG2674|consen 225 LEFSNGITEWKPLLLLIPLRLGITSINPSYVPALKECFEMPQSVGIIGGRPNHSLYFVGYQGDELFYLDPHYTQPAVEVS 304 (409)
T ss_pred cccCCCCCCCcceEEEEEeeecccccChHHHHHHHHHhcchhhceeccCCCCcceEEEEEecceEEEeCCccCccccccc
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCccccCccccccccccCCccEEEEEeCChhhHHHHHHHHHHHHhhcCC---CCcEEEecCCC
Q 011432 379 KDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARASKLAEESNG---APLFTVTQTHK 445 (486)
Q Consensus 379 ~~~~~~~~~SyHc~~~rkm~i~~lDPSmalGFycr~~~Df~df~~~i~~l~~~~~~---~PLF~v~~~~p 445 (486)
. +...+.+||||+.++||++.+|||||||||||++++||++||.+++++...++. +|||+..+.+.
T Consensus 305 ~-~~~~~~esfHC~~~~km~f~~mDPS~alGF~c~~~~dF~~~c~~l~k~~~~s~~~~~~~lf~~~~~h~ 373 (409)
T KOG2674|consen 305 K-AKDVPDETFHCQSLRKMAFEDMDPSLALGFYCKDEDDFDNLCSELKKSLSLSSALEMFELFTRVPSHW 373 (409)
T ss_pred c-cCCCCccccccCchhhcchhhcCcceEEEEEecCHHHHHHHHHHHHHHhccccCcccccceecccccc
Confidence 3 233467899999999999999999999999999999999999999998766665 56666655554
No 2
>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification.; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.
Probab=100.00 E-value=3.2e-99 Score=754.81 Aligned_cols=274 Identities=48% Similarity=0.917 Sum_probs=213.0
Q ss_pred chHHHHhhccccEEEeecCCCCCCCCCcccccCCccccccchhhHHHHHHHHhhhCCCCcCCCCCCCcHHHHHHhhhcCC
Q 011432 136 GLAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGD 215 (486)
Q Consensus 136 ~~~~f~~Df~SriWfTYRk~F~pI~~s~~TSD~GWGCMLRsgQMLLAqAL~~h~LGRdwr~~~~~~~~~e~~~IL~lF~D 215 (486)
+.++|++||+||||||||+||+||+++++|||+|||||||||||||||||++|++||+|++....+.++.+.+||+||.|
T Consensus 2 ~~~~~~~d~~s~iwfTYR~~F~~i~~s~~tSD~GWGCmlRs~QMlLAqaL~~~~lgr~~~~~~~~~~~~~~~~il~~F~D 81 (278)
T PF03416_consen 2 NKEEFLKDFSSRIWFTYRKGFPPIPGSGLTSDCGWGCMLRSGQMLLAQALLRHHLGRDWRWPDNSDNNEEYRRILSLFQD 81 (278)
T ss_dssp THHHHHHHHHCSB---EEESS--TTTTS-SB-TTT-HHHHHHHHHHHHHHHHHHC-TT--TTTTSS--HHHHHHHHTTSS
T ss_pred cHHHHHHHHhhheEEeccCCCCCCCCCCcccCCCcccccchhHHHHHHHHHHHhhcccccccccccCcHHHHHHHHhcCC
Confidence 46899999999999999999999999999999999999999999999999999999999998775667789999999999
Q ss_pred CCCCCchhhHHHHHHHHc-CCCCccccChhHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeeCCCCCCCCCCceEecccc
Q 011432 216 SETSPFSIHNLLQAGKAY-GLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDA 294 (486)
Q Consensus 216 ~~~aPFSIH~iv~~G~~~-gk~pGeWfGPs~~a~~i~~L~~~~~~~~~~~~~~~~l~vyv~s~~~dge~g~~~vv~~dd~ 294 (486)
.++||||||||+++|.++ ||+||+||||+++|++|++|++.+ ...+++|||++++ +++.+|+
T Consensus 82 ~~~apfSIh~i~~~g~~~~g~~~G~W~gPs~~~~~l~~l~~~~--------~~~~l~v~v~~d~---------~i~~~d~ 144 (278)
T PF03416_consen 82 SPSAPFSIHNIVQEGKSEFGKKPGEWFGPSTIAQALKKLVNEA--------DLSGLRVYVSSDG---------TIYYDDV 144 (278)
T ss_dssp STTSTTSHHHHHHHHHTT-T--TTS-B-HHHHHHHHHHHHCC---------TTT--EEEE-BTT---------EEEHHHH
T ss_pred CCCCcchHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHhc--------cccCceEEEeecc---------ccchhHH
Confidence 999999999999999987 999999999999999999999743 3346899998754 6788888
Q ss_pred ccccccc--cCCCCCCccEEEEEeeeecCCCCCcchHHHHHHHhCCCceeEEecCCCCceEEEEEEecCceEeeCCCCcc
Q 011432 295 SRHCSVF--SKGQADWTPILLLVPLVLGLEKVNPRYIPTLRLTFTFPQSLGIVGGKPGASTYIVGVQEESAIYLDPHDVQ 372 (486)
Q Consensus 295 ~~~c~~~--~~~~~~w~plLlLIPlRLGld~iNp~Y~~~Lk~~f~lpqsvGIiGGkP~~SlYFvG~q~d~LiYLDPH~vQ 372 (486)
.+.|... ......|+|||||||+|||+|++||+|++.|+++|++|||||||||||++|+||||+|+|+|||||||+||
T Consensus 145 ~~~~~~~~~~~~~~~~~~vLlliplrLGl~~in~~Y~~~l~~~l~~pq~vGiiGG~p~~a~YfvG~~~d~liYLDPH~~Q 224 (278)
T PF03416_consen 145 EELCSNSNPTKQSSWWKPVLLLIPLRLGLDKINPKYIPSLKSLLSLPQSVGIIGGRPNSALYFVGFQGDQLIYLDPHYVQ 224 (278)
T ss_dssp HHHHCCS-S-----CE--EEEEEEEE-SSSS--GGGHHHHHHHCCSTTEEEEEEEETTEEEEEEEEETTEEEEE---SEE
T ss_pred HHHHhhhccccccccCceEEEEEEeecCCCCCCHHHHHHHHHHhCCcccceeeccCCCceEEEEEEccCeEEEECCCCCe
Confidence 8776432 12345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCccccCccccccccccCCccEEEEEeCChhhHHHHHHHHH
Q 011432 373 PVINIGKDDLEADTSTYHSDVIRHIHLDSIDPSLAIGFYCRDKDDFDDFCARAS 426 (486)
Q Consensus 373 ~av~~~~~~~~~~~~SyHc~~~rkm~i~~lDPSmalGFycr~~~Df~df~~~i~ 426 (486)
+|++....+.+.+.+||||..+++|++++|||||+|||||+|++||++||++++
T Consensus 225 ~a~~~~~~~~~~~~~s~h~~~~~~~~~~~lDPS~~lgF~~~~~~d~~~~~~~i~ 278 (278)
T PF03416_consen 225 PAVDSQNNNFELDDSSYHCSSPRKMPISKLDPSMALGFYCRNEEDFEDFCKRIQ 278 (278)
T ss_dssp E-----TTS-----GGGC-SSSEEEEGGGS-SEEEEEEEESSHHHHHHHHHHHH
T ss_pred eCCccCCCCCcCCCCceecCCcccCcHhhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 999877655554568999999999999999999999999999999999999985
No 3
>PF07910 Peptidase_C78: Peptidase family C78; InterPro: IPR012462 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry contains UfSP1 and UfSP2, which are cysteine peptidases required for the processing and activation of Ubiquitin fold modifier 1 (Ufm1, IPR005375 from INTERPRO) and for its release from conjugated cellular proteins. UfSP1 and UfSP2 are 217 aa and 461 aa respectively [, ]. The peptidases belong to MEROPS peptidase family C78, clan CA. The UfSP2 family have an N-terminal extension with one or more zinc finger domains of the C2H2 type (IPR007087 from INTERPRO), which have been shown to be involved in protein:protein interaction. UfSP2 is present in most, if not all, multi-cellular organisms including plants, nematodes, flies, and mammals, whereas UfSP1 is not present in plants and nematodes []. ; PDB: 3OQC_B 2Z84_A.
Probab=97.91 E-value=1.2e-05 Score=79.10 Aligned_cols=47 Identities=23% Similarity=0.231 Sum_probs=29.1
Q ss_pred chHHHHHHHhCCC-c----------eeEEecCCCCceEEEEEEec-----CceEeeCCCCcccc
Q 011432 327 RYIPTLRLTFTFP-Q----------SLGIVGGKPGASTYIVGVQE-----ESAIYLDPHDVQPV 374 (486)
Q Consensus 327 ~Y~~~Lk~~f~lp-q----------svGIiGGkP~~SlYFvG~q~-----d~LiYLDPH~vQ~a 374 (486)
..++.|.+-|+-. . .--++|| ..||.=+||+.- -+|+.||||++-.+
T Consensus 123 ~l~~~v~~yF~~~~~~~~~~~~t~~~Piylqh-~ghS~TIvGie~~~~g~~~LLVlDP~~~~~~ 185 (218)
T PF07910_consen 123 RLLDWVWNYFESGCGSPSQSRQTNKPPIYLQH-DGHSRTIVGIERNKDGEVNLLVLDPHYTGSD 185 (218)
T ss_dssp CGHHHHHHHHCCT--------------EEEEE-TTEEEEEEEEEE-TT--EEEEEE-TT--S-S
T ss_pred HHHHHHHHHhhcCCCccccccccCCCCeEeCc-cccceEEEEEEECCCCCEEEEEECCCCCCHH
Confidence 3445555555544 2 3345666 999999999975 47999999997764
No 4
>KOG2433 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.0053 Score=65.15 Aligned_cols=69 Identities=26% Similarity=0.462 Sum_probs=41.8
Q ss_pred ccccCCccccccchhhHHHHHHHHhhhCCCCcCCCCCCCcHHHHHHhhhcCC---CCCCCchhhHHHHHHHHcCCCCccc
Q 011432 164 ITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGD---SETSPFSIHNLLQAGKAYGLAAGSW 240 (486)
Q Consensus 164 ~TSD~GWGCMLRsgQMLLAqAL~~h~LGRdwr~~~~~~~~~e~~~IL~lF~D---~~~aPFSIH~iv~~G~~~gk~pGeW 240 (486)
-.-|.||||..||=|-+-.--.+. |-. ....| .+++|-+...| .|. .| +---+|
T Consensus 402 ~idD~GWGCAYRSlQTIcSWFilq---GYT---~~pIP---tHrEiQqaLvdi~DKpA-~F-------------VGSrQW 458 (577)
T KOG2433|consen 402 GIDDSGWGCAYRSLQTICSWFILQ---GYT---DKPIP---THREIQQALVDIQDKPA-KF-------------VGSRQW 458 (577)
T ss_pred ccccCCcchhhHhHHHHHHHHHHc---Ccc---CCCCC---cHHHHHHHHHhccCccc-ce-------------ecccce
Confidence 357999999999998876554432 211 11112 34444444333 331 11 112379
Q ss_pred cChhHHHHHHHHHHH
Q 011432 241 VGPYAMCRSWEALAR 255 (486)
Q Consensus 241 fGPs~~a~~i~~L~~ 255 (486)
.|-+.+..++..|++
T Consensus 459 IGStEis~vLn~ll~ 473 (577)
T KOG2433|consen 459 IGSTEISFVLNELLK 473 (577)
T ss_pred ecchhHHHHHHHHhc
Confidence 999999999999886
No 5
>KOG2674 consensus Cysteine protease required for autophagy - Apg4p/Aut2p [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=0.0062 Score=64.70 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=90.1
Q ss_pred ccccccccccccccccccCCChhHHHHHHhhcchHHHHHHHhhCCCCCCCCCCCCcEEEcCeeecCCCcccccccCCCcc
Q 011432 57 FETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQDEALGDAAGNNG 136 (486)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvwlLG~~Y~~~~~~~~~~~~~~~~ 136 (486)
-=||+.-=+.-.....+.+.||+|++|. |.|.-.|-.+.. -||+-+....+..
T Consensus 75 w~TYR~~F~pig~t~~ttD~GWGCMlR~----gQMllaqaL~~~--------------~lGRdw~w~~~~~--------- 127 (409)
T KOG2674|consen 75 WFTYRRGFSPIGGTGPTTDCGWGCMLRC----GQMLLAQALICR--------------HLGRDWRWTDEKR--------- 127 (409)
T ss_pred eeeccCCCCcccCCCcccCcceeeEEeh----hHHHHHHHHHHh--------------hcccccccccccc---------
Confidence 3466665544555558999999999988 666555433221 1344333322211
Q ss_pred hHHHHhhccccEEEeecCCCCCCCCCcccccCCccccccchhhHHHHHHHHhhhCCCCcCCCCCCCcHHHHHHhhhcCCC
Q 011432 137 LAEFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDS 216 (486)
Q Consensus 137 ~~~f~~Df~SriWfTYRk~F~pI~~s~~TSD~GWGCMLRsgQMLLAqAL~~h~LGRdwr~~~~~~~~~e~~~IL~lF~D~ 216 (486)
.+ .+|++ -++.+.+|+|+.+|.++|++.+...+ +.|-+||+++
T Consensus 128 -----~~------~~y~~--------il~~F~D~~~a~~SiHq~~~~G~~~~------------------~~~g~WfGP~ 170 (409)
T KOG2674|consen 128 -----LE------EEYLK--------ILNLFEDEPDAPFSIHQIVQMGVGEG------------------KAVGSWFGPN 170 (409)
T ss_pred -----cc------hHHHH--------HHHhhcCCCccccCHHHHHHHHhhcc------------------CCCccccCCc
Confidence 00 12222 57889999999999999999998753 2467899998
Q ss_pred CCCCchhhHHHHHHHHcCCCCccccChhHHHHHHHHHHHH
Q 011432 217 ETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARC 256 (486)
Q Consensus 217 ~~aPFSIH~iv~~G~~~gk~pGeWfGPs~~a~~i~~L~~~ 256 (486)
+.|.+ +...+...++.++.|+++-..+.+|+.....
T Consensus 171 ~~a~~----~~~L~~~~~~~~~~~~v~~~~~vv~~d~~~~ 206 (409)
T KOG2674|consen 171 TVAQV----LKKLARFDPWSSLAVYVAMDNAVIIRDIVEK 206 (409)
T ss_pred HHHHH----HHHhhccCCCCCccEEEecccceEEeeeehh
Confidence 87776 6667777889999999998888877766554
No 6
>KOG4696 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.64 E-value=0.19 Score=51.91 Aligned_cols=40 Identities=38% Similarity=0.645 Sum_probs=30.4
Q ss_pred EEEeecCCCCCCCC----CcccccCCccccccchhhHHHHHHHH
Q 011432 148 ILISYRKGFDPIGD----SKITSDVGWGCMLRSSQMLVAQALLF 187 (486)
Q Consensus 148 iWfTYRk~F~pI~~----s~~TSD~GWGCMLRsgQMLLAqAL~~ 187 (486)
+-...-|||.-|+. ...--|.||||..|+.|||++..|..
T Consensus 171 le~awnkGFDi~~ALH~D~R~~G~K~W~~~~~~~qml~s~gl~~ 214 (393)
T KOG4696|consen 171 LESAWNKGFDIIEALHTDVRSLGDKGWGCGYRNFQMLDSEGLAQ 214 (393)
T ss_pred HHHHHhcccchhhhhcccchhcccccccccchhHHHHHHHHHHh
Confidence 34456678886652 23455889999999999999999975
No 7
>KOG4696 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.20 E-value=1.4 Score=45.84 Aligned_cols=22 Identities=41% Similarity=0.786 Sum_probs=19.5
Q ss_pred cccCCccccccchhhHHHHHHH
Q 011432 165 TSDVGWGCMLRSSQMLVAQALL 186 (486)
Q Consensus 165 TSD~GWGCMLRsgQMLLAqAL~ 186 (486)
.=|.||||--|.+||.+|.-|.
T Consensus 124 ~~d~Gwgcgw~niqmq~shll~ 145 (393)
T KOG4696|consen 124 GIDRGWGCGWRNIQMQISHLLY 145 (393)
T ss_pred ccccccCccccchHHHHHHHHh
Confidence 3499999999999999999665
No 8
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=41.96 E-value=30 Score=29.53 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=22.2
Q ss_pred ceeEEecCCCCceEEEEEEecCc-eEeeCCC
Q 011432 340 QSLGIVGGKPGASTYIVGVQEES-AIYLDPH 369 (486)
Q Consensus 340 qsvGIiGGkP~~SlYFvG~q~d~-LiYLDPH 369 (486)
..-+..++...|.+-++|+.++. +++.||+
T Consensus 114 ~~~~~~~~~~~H~vvi~Gy~~~~~~~v~DP~ 144 (144)
T PF13529_consen 114 NGDGYDGTYGGHYVVIIGYDEDGYVYVNDPW 144 (144)
T ss_dssp TTEEEEE-TTEEEEEEEEE-SSE-EEEE-TT
T ss_pred CCCCcCCCcCCEEEEEEEEeCCCEEEEeCCC
Confidence 34456677788999999999999 9999995
No 9
>PF15644 Tox-PL: Papain fold toxin 1; PDB: 3B21_A.
Probab=37.90 E-value=28 Score=30.46 Aligned_cols=24 Identities=38% Similarity=0.772 Sum_probs=17.0
Q ss_pred cCCCCceEEEEEEecCceEeeCCCC
Q 011432 346 GGKPGASTYIVGVQEESAIYLDPHD 370 (486)
Q Consensus 346 GGkP~~SlYFvG~q~d~LiYLDPH~ 370 (486)
||.+.|++..+ +++..+.||||=.
T Consensus 84 gg~~gHa~nvv-~~~G~i~~~D~Q~ 107 (111)
T PF15644_consen 84 GGGPGHAFNVV-NQNGKIVFLDPQS 107 (111)
T ss_dssp ----TTEEEEE-EE-SSEEEEBTTT
T ss_pred ccccceEEEEE-eCCCeEEEEeCCC
Confidence 44458999999 9988899999954
No 10
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=37.48 E-value=1.2e+02 Score=26.48 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=43.9
Q ss_pred CceEEEEEEe---cCceEeeCCCCcccccccCC-CCCCCCCCccccCccc-cccccccCCcc-EEEEEeCChhhHHHHHH
Q 011432 350 GASTYIVGVQ---EESAIYLDPHDVQPVINIGK-DDLEADTSTYHSDVIR-HIHLDSIDPSL-AIGFYCRDKDDFDDFCA 423 (486)
Q Consensus 350 ~~SlYFvG~q---~d~LiYLDPH~vQ~av~~~~-~~~~~~~~SyHc~~~r-km~i~~lDPSm-alGFycr~~~Df~df~~ 423 (486)
-+..||+... +..|+|+.++.-.....+.. .+. .....|-.... ..-+.=..|+- ..-|+|.+.+|-++|.+
T Consensus 16 wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~--~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~~er~~Wi~ 93 (98)
T cd01245 16 WKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA--YLYPVHDSLFGRPNCFQIVERALPTVYYSCRSSEERDKWIE 93 (98)
T ss_pred cceeEEEEecCCCCceEEEEcCCCCCCccceeecccc--EEEEccccccCCCeEEEEecCCCCeEEEEeCCHHHHHHHHH
Confidence 3678998752 48999999887544432211 111 11112211111 12223345665 66799999999999998
Q ss_pred HHHH
Q 011432 424 RASK 427 (486)
Q Consensus 424 ~i~~ 427 (486)
.|++
T Consensus 94 ~l~~ 97 (98)
T cd01245 94 SLQA 97 (98)
T ss_pred HHhc
Confidence 8764
No 11
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=34.66 E-value=62 Score=28.13 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.0
Q ss_pred ecCCCCceEEEEEEe-cCceEeeCCCC
Q 011432 345 VGGKPGASTYIVGVQ-EESAIYLDPHD 370 (486)
Q Consensus 345 iGGkP~~SlYFvG~q-~d~LiYLDPH~ 370 (486)
.++..+|.+-++|+. ++.+++.||..
T Consensus 89 ~~~~~gH~vVv~g~~~~~~~~i~DP~~ 115 (141)
T cd02549 89 SITPSGHAMVVIGYDRKGNVYVNDPGG 115 (141)
T ss_pred ccCCCCeEEEEEEEcCCCCEEEECCCC
Confidence 456678999999999 88999999964
No 12
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=22.69 E-value=57 Score=31.42 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=44.9
Q ss_pred ceEEEEEEecCceEeeCCCCcccccccCCCCCCC--CCCccccCcc-ccccccccCCccEEEEEeCChhhHHHHHHHHHH
Q 011432 351 ASTYIVGVQEESAIYLDPHDVQPVINIGKDDLEA--DTSTYHSDVI-RHIHLDSIDPSLAIGFYCRDKDDFDDFCARASK 427 (486)
Q Consensus 351 ~SlYFvG~q~d~LiYLDPH~vQ~av~~~~~~~~~--~~~SyHc~~~-rkm~i~~lDPSmalGFycr~~~Df~df~~~i~~ 427 (486)
-++||.|++....+-.+||.+-..+...+...|. +..++ +.+ ....-.+=|| =..|=.|=+.+|++.+|.++++
T Consensus 59 Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~Gte--s~~~~~~~ngN~~p-rGfgHIci~V~di~sac~~lke 135 (170)
T KOG2944|consen 59 FSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNWGTE--SPPDQAYLNGNKEP-RGFGHICIEVDDINSACERLKE 135 (170)
T ss_pred hHHHhhcccccccCccCCCCCceEEecccCceeeecCCCCC--CCcchhhcCCCCCC-CccceEEEEeCCHHHHHHHHHH
Confidence 3579999999999999999886554443322221 00011 011 2222234455 3345555566888899999987
Q ss_pred H
Q 011432 428 L 428 (486)
Q Consensus 428 l 428 (486)
.
T Consensus 136 k 136 (170)
T KOG2944|consen 136 K 136 (170)
T ss_pred h
Confidence 5
No 13
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=20.34 E-value=1.9e+02 Score=25.36 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=32.2
Q ss_pred EEEEEeC----ChhhHHHHHHHHHHHHhhcC-CCCcEEEecCC
Q 011432 407 AIGFYCR----DKDDFDDFCARASKLAEESN-GAPLFTVTQTH 444 (486)
Q Consensus 407 alGFycr----~~~Df~df~~~i~~l~~~~~-~~PLF~v~~~~ 444 (486)
++.|||. +.++++.+...++++++... +.=+|-+++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~ 60 (111)
T cd03073 18 VVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKE 60 (111)
T ss_pred EEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHH
Confidence 8899888 78999999999999998877 57778877654
Done!