Query 011433
Match_columns 486
No_of_seqs 272 out of 1780
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 01:18:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1894 NuoF NADH:ubiquinone o 100.0 2E-139 3E-144 1060.1 38.4 418 56-476 4-423 (424)
2 PLN03132 NADH dehydrogenase (u 100.0 2E-133 5E-138 1053.0 47.7 458 27-484 2-459 (461)
3 KOG2658 NADH:ubiquinone oxidor 100.0 3E-131 6E-136 981.9 33.5 453 32-484 23-476 (478)
4 PTZ00304 NADH dehydrogenase [u 100.0 4E-124 8E-129 985.3 45.0 422 55-476 19-441 (461)
5 PRK13596 NADH dehydrogenase I 100.0 1E-120 2E-125 956.8 44.5 421 58-478 2-422 (433)
6 PRK11278 NADH dehydrogenase I 100.0 2E-116 5E-121 926.2 45.1 419 63-483 14-436 (448)
7 TIGR01959 nuoF_fam NADH-quinon 100.0 1E-113 3E-118 901.4 43.7 408 64-473 2-411 (411)
8 PRK05035 electron transport co 100.0 6.6E-62 1.4E-66 537.2 29.6 320 87-473 118-442 (695)
9 TIGR01945 rnfC electron transp 100.0 1.4E-61 3.1E-66 512.9 26.2 316 88-471 113-433 (435)
10 COG4656 RnfC Predicted NADH:ub 100.0 5.6E-57 1.2E-61 473.2 26.0 330 75-472 104-436 (529)
11 PRK05352 Na(+)-translocating N 100.0 1.1E-44 2.3E-49 384.0 20.7 307 89-471 109-446 (448)
12 TIGR01936 nqrA NADH:ubiquinone 100.0 6.9E-43 1.5E-47 369.7 22.0 307 90-470 107-444 (447)
13 PF01512 Complex1_51K: Respira 100.0 4.4E-43 9.4E-48 322.8 15.3 151 103-276 1-151 (151)
14 PF10589 NADH_4Fe-4S: NADH-ubi 99.5 2.2E-15 4.7E-20 112.3 1.1 46 387-432 1-46 (46)
15 PF10531 SLBB: SLBB domain; I 98.4 7.7E-07 1.7E-11 69.4 5.9 50 298-351 1-57 (59)
16 COG1726 NqrA Na+-transporting 97.4 0.0007 1.5E-08 70.1 9.8 195 88-345 107-304 (447)
17 PF05896 NQRA: Na(+)-transloca 96.6 0.0099 2.2E-07 59.7 9.3 172 60-282 82-256 (257)
18 PF11973 NQRA_SLBB: NQRA C-ter 95.1 0.039 8.5E-07 42.2 4.6 46 298-352 1-47 (51)
19 PRK09853 putative selenate red 93.7 0.1 2.2E-06 61.7 6.0 84 361-471 343-429 (1019)
20 TIGR03315 Se_ygfK putative sel 92.8 0.14 3.1E-06 60.6 5.4 66 370-445 350-418 (1012)
21 TIGR03027 pepcterm_export puta 91.8 0.25 5.4E-06 46.2 4.8 36 296-332 78-113 (165)
22 PRK08640 sdhB succinate dehydr 87.2 0.74 1.6E-05 46.2 4.4 77 395-472 147-241 (249)
23 TIGR03028 EpsE polysaccharide 86.4 0.72 1.6E-05 45.7 3.8 36 296-332 78-113 (239)
24 TIGR03028 EpsE polysaccharide 86.4 1 2.2E-05 44.7 4.8 35 298-333 164-198 (239)
25 TIGR00273 iron-sulfur cluster- 86.3 0.44 9.6E-06 51.5 2.3 85 376-470 273-373 (432)
26 COG1596 Wza Periplasmic protei 82.9 1.2 2.6E-05 44.3 3.5 36 296-332 124-160 (239)
27 TIGR03290 CoB_CoM_SS_C CoB--Co 80.8 0.53 1.1E-05 43.0 0.1 68 400-470 2-76 (144)
28 PRK12575 succinate dehydrogena 79.9 1.8 4E-05 43.1 3.6 76 396-472 140-233 (235)
29 PRK15078 polysaccharide export 78.1 3.3 7.2E-05 44.1 5.1 37 296-333 170-207 (379)
30 COG1152 CdhA CO dehydrogenase/ 74.7 1.1 2.4E-05 49.7 0.5 66 400-467 400-465 (772)
31 PRK11274 glcF glycolate oxidas 74.3 1.5 3.3E-05 46.4 1.4 69 400-471 23-104 (407)
32 COG1150 HdrC Heterodisulfide r 73.9 1.4 2.9E-05 42.8 0.7 70 399-471 38-114 (195)
33 PRK12577 succinate dehydrogena 72.8 4.8 0.0001 42.0 4.6 74 396-471 148-240 (329)
34 PRK15078 polysaccharide export 72.7 5.1 0.00011 42.7 4.8 36 296-332 254-290 (379)
35 PRK05950 sdhB succinate dehydr 71.0 4.3 9.4E-05 40.0 3.6 75 396-471 137-229 (232)
36 PRK12576 succinate dehydrogena 68.7 3.3 7.2E-05 42.3 2.3 73 395-468 147-234 (279)
37 TIGR00384 dhsB succinate dehyd 65.3 4.2 9.1E-05 39.8 2.2 68 396-464 134-218 (220)
38 COG0247 GlpC Fe-S oxidoreducta 63.7 7.8 0.00017 40.3 4.0 73 398-472 7-90 (388)
39 PRK13552 frdB fumarate reducta 60.8 12 0.00026 37.4 4.5 75 394-469 143-235 (239)
40 PRK12385 fumarate reductase ir 60.3 14 0.00029 37.1 4.8 77 395-472 142-235 (244)
41 PRK15175 Vi polysaccharide exp 57.5 11 0.00025 39.8 3.9 45 296-341 238-283 (355)
42 PRK12814 putative NADPH-depend 55.8 13 0.00027 42.4 4.1 154 298-469 5-176 (652)
43 TIGR00314 cdhA CO dehydrogenas 53.5 3.7 8E-05 47.5 -0.6 66 399-469 398-466 (784)
44 cd01916 ACS_1 Acetyl-CoA synth 52.9 15 0.00032 42.6 4.0 67 399-470 364-433 (731)
45 PLN00129 succinate dehydrogena 52.3 15 0.00032 37.7 3.5 74 395-469 182-273 (276)
46 COG1139 Uncharacterized conser 50.6 4.4 9.6E-05 43.7 -0.5 88 376-472 287-390 (459)
47 PRK06259 succinate dehydrogena 50.3 7.3 0.00016 42.5 1.1 73 395-469 128-215 (486)
48 PRK15033 tricarballylate utili 49.5 16 0.00035 39.1 3.4 71 386-467 24-100 (389)
49 PRK11168 glpC sn-glycerol-3-ph 47.3 4.7 0.0001 42.4 -0.9 71 399-471 6-85 (396)
50 COG3383 Uncharacterized anaero 44.4 12 0.00026 43.2 1.6 27 399-426 191-217 (978)
51 PRK07570 succinate dehydrogena 43.7 8.1 0.00018 38.9 0.2 74 395-469 152-241 (250)
52 PRK00941 acetyl-CoA decarbonyl 41.6 16 0.00036 42.4 2.2 68 398-470 402-472 (781)
53 KOG2501 Thioredoxin, nucleored 39.4 12 0.00027 35.2 0.6 25 401-425 41-65 (157)
54 PRK12386 fumarate reductase ir 38.0 23 0.00049 35.8 2.3 76 394-472 136-233 (251)
55 PF13183 Fer4_8: 4Fe-4S diclus 35.3 34 0.00074 25.5 2.4 20 400-419 3-22 (57)
56 COG1600 Uncharacterized Fe-S p 35.1 11 0.00025 39.6 -0.4 53 399-455 184-249 (337)
57 TIGR02484 CitB CitB domain pro 34.7 16 0.00035 39.0 0.7 49 400-454 14-62 (372)
58 COG1453 Predicted oxidoreducta 33.0 44 0.00094 35.8 3.5 73 399-472 295-383 (391)
59 COG1166 SpeA Arginine decarbox 31.9 1.7E+02 0.0036 33.2 7.8 105 76-204 105-211 (652)
60 PRK13984 putative oxidoreducta 31.9 31 0.00066 38.6 2.4 34 434-468 180-213 (604)
61 TIGR03379 glycerol3P_GlpC glyc 29.9 6.5 0.00014 41.5 -3.2 70 400-470 5-82 (397)
62 PF13684 Dak1_2: Dihydroxyacet 29.5 4.4E+02 0.0095 27.3 10.2 114 307-442 96-209 (313)
63 PF13534 Fer4_17: 4Fe-4S diclu 28.1 24 0.00051 26.9 0.5 24 402-425 2-32 (61)
64 KOG0910 Thioredoxin-like prote 26.2 45 0.00097 31.2 2.0 19 404-422 72-90 (150)
65 PRK13984 putative oxidoreducta 25.4 40 0.00087 37.7 1.8 49 400-452 185-236 (604)
66 TIGR01723 hmd_TIGR 5,10-methen 25.3 3.1E+02 0.0066 28.7 7.8 97 376-473 143-273 (340)
67 PRK00961 H(2)-dependent methyl 24.6 3.4E+02 0.0073 28.4 7.9 97 376-473 145-275 (342)
68 TIGR00016 ackA acetate kinase. 22.0 1.5E+02 0.0033 32.1 5.3 110 56-192 232-348 (404)
69 TIGR00364 exsB protein. This p 21.5 39 0.00084 32.2 0.7 41 361-410 160-200 (201)
70 PRK06437 hypothetical protein; 21.2 1.7E+02 0.0037 23.2 4.3 41 297-344 3-43 (67)
71 TIGR01318 gltD_gamma_fam gluta 21.0 53 0.0011 35.7 1.7 30 399-428 39-73 (467)
72 COG0282 ackA Acetate kinase [E 21.0 2.3E+02 0.005 30.6 6.2 105 57-188 227-336 (396)
No 1
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-139 Score=1060.06 Aligned_cols=418 Identities=59% Similarity=0.990 Sum_probs=404.0
Q ss_pred cCCCCcce-EEeccccccCCChhHHHhcCCchhcHHHH-hcChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCC
Q 011433 56 GGLKDEDR-IFTNLYGMHDPFLKGAMKRGDWHRTKDLV-LKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRP 133 (486)
Q Consensus 56 ~~~~~~~~-i~~~~~g~~~~~~~~~~~~ggy~~l~~~~-~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~ 133 (486)
+.+++|.| +|.+.....+|+||+|+++|||++|++++ +|+|++||++||+|||||||||||||++||++++++ ....
T Consensus 4 ~~~~~~~r~~~~~~~~~~~~~l~~y~a~ggy~~l~kal~~m~p~~II~~Vk~SGLRGRGGAGFpTGlKWsfm~k~-~~~~ 82 (424)
T COG1894 4 PFLKNQDRITFRNLGDPDPWSLDEYLARGGYEGLRKALTEMGPDEIIEEVKESGLRGRGGAGFPTGLKWSFMPKA-TSDQ 82 (424)
T ss_pred chhhhhhhHHHHhcCCCCcccHHHHHhcCcHHHHHHHHHhcCHHHHHHHHHHcCCCCCCCCCCCCCceeeecccC-CCCc
Confidence 45778888 57676776678999999999999999999 699999999999999999999999999999999884 3344
Q ss_pred cEEEEEccCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCC
Q 011433 134 SYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSG 213 (486)
Q Consensus 134 ~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g 213 (486)
|||||||||+||++||||.||+++||.|||||+|++||+||.++|||||+||+.++++|++||+|||++||||+|||||+
T Consensus 83 kylvcNADE~ePGTfkDR~ime~dPH~LIEGm~IA~yA~gA~~~YiYiRgEy~~a~~~l~~AI~eA~~~GlLGknilGSg 162 (424)
T COG1894 83 KYLVCNADEGEPGTFKDRLIMEGDPHLLIEGMIIAAYAVGATKGYIYIRGEYPEAIERLQKAIEEAYAAGLLGKNILGSG 162 (424)
T ss_pred eEEEEeCCCCCCcccccHHHHhcCcHHHHHHHHHHHHHhccceeEEEEecchHHHHHHHHHHHHHHHHhCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCC
Q 011433 214 YDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNN 293 (486)
Q Consensus 214 ~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~ 293 (486)
|+|||+||.++++|+||||||||+|||||++.||.|||||+..||||+||+||||||+++||.|+++|..||+++|++++
T Consensus 163 fdfdl~vh~GAGAYICGEETALl~SLEGkrg~PR~KPPfPa~~GL~G~PT~INNVET~a~vP~Ii~~G~~wf~~~G~~~s 242 (424)
T COG1894 163 FDFDLYVHHGAGAYICGEETALLESLEGKRGQPRLKPPFPATSGLYGKPTVINNVETLANVPAIIRRGADWFRSIGKPNS 242 (424)
T ss_pred cceEEEEecCCcceecchHHHHHHHhcCCCCCCCCCCCCccccCccCCCceeecchhhhhhHHHHHhhHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCccccccccccccChhHHhhhccccc
Q 011433 294 SGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLG 373 (486)
Q Consensus 294 ~gtk~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d~~~d~d~l~~~g~~~G 373 (486)
+|||+|+|||+|++||+||+|||||++|||+++|||+.+|| ++|+||+||+|+|+++.+.+ |++||||+|+++|+++|
T Consensus 243 ~GTKlf~~sG~V~~pg~~E~pmG~tlrelie~~aGG~r~G~-~lKAv~pGG~s~~~l~~~~~-d~pmDydsl~~~gs~lG 320 (424)
T COG1894 243 RGTKLFSLSGHVKNPGLYEVPMGTTLRELIEDYAGGVRGGW-KLKAVQPGGPSGPCLPEELL-DTPMDYDSLAKAGSMLG 320 (424)
T ss_pred CCceEEEeeccccCCceEEecCCCcHHHHHHHhcCCcCCCc-eeEEEeeCCCCcccCCHHHh-CCCcCHHHHHhcccccC
Confidence 99999999999999999999999999999998999999997 89999999999999996555 79999999999999999
Q ss_pred cceEEeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCcc
Q 011433 374 TAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDA 453 (486)
Q Consensus 374 tg~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~ 453 (486)
||+|||||+++|||+.++++++||++||||||+|||+|+.|++++|+||.+|+++++|+|+|++++++|+++|+|+||++
T Consensus 321 tggiiV~d~~~~mv~~~~~~~~F~~~ESCGkCtPCReGt~w~~~il~ri~~G~~~~~dl~~L~~l~~~i~g~s~CalG~~ 400 (424)
T COG1894 321 TGGIIVMDDSTCMVKAARRLSEFYKHESCGKCTPCREGTGWMVRILERLVRGEGQPEDLDLLEDLCNQIKGKTFCALGDA 400 (424)
T ss_pred cceEEEEeCcccHHHHHHHHHHHhccCcCCCCCCccCCcHHHHHHHHHHHcCCCChHHHHHHHHHHhccCCceeeecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhHHHHHHHHHhc
Q 011433 454 AAWPVQGLIRHFRPELERRIKEH 476 (486)
Q Consensus 454 a~~pv~s~I~~FrdEfe~hi~~~ 476 (486)
+++||+|+|+||||||++||+..
T Consensus 401 a~~Pv~s~lr~Fr~E~~~~i~~~ 423 (424)
T COG1894 401 AAWPVQSALRHFRDEFEAHIKVG 423 (424)
T ss_pred chhHHHHHHHhCHHHHHHhhccC
Confidence 99999999999999999999643
No 2
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=100.00 E-value=2.2e-133 Score=1053.04 Aligned_cols=458 Identities=95% Similarity=1.553 Sum_probs=441.7
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCccccCCCCcceEEeccccccCCChhHHHhcCCchhcHHHHhcChHHHHHHHHHc
Q 011433 27 LRSFSTQGASTASTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKS 106 (486)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~ggy~~l~~~~~~~~e~ii~~i~~s 106 (486)
+|.+++|......++||||++|+++|++|+++..+.+++.+.++.+++++++|+++|||+.+++++.|++++|+++|++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~ggy~~l~~~~~~~p~~ii~~V~~s 81 (461)
T PLN03132 2 LRAFSTQAAATAATPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGPDWIVNEMKKS 81 (461)
T ss_pred ccccccccccccCCCCCcccCCCCcccCCCccccCceeeeeccCCCCCCHHHHHHcCCHHHHHHHHhCCHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccccCCCCCCCCCcEEEEEccCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCH
Q 011433 107 GLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYV 186 (486)
Q Consensus 107 Gl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~ 186 (486)
|||||||||||||+||+++++..+.++|||||||+||||++||||+||+++||+|||||+|+++++||+++|||||+||+
T Consensus 82 GLrGrGGAGFPtg~Kw~~~~~~~~~~~~ylv~NadE~EPg~~kDr~Lm~~~Ph~vieG~~iaa~avgA~~~~IyIr~ey~ 161 (461)
T PLN03132 82 GLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYV 161 (461)
T ss_pred CCCCCCcccchhHHHHHhcccccCCCCCEEEEECCCCCccchhcHHHHhHCHHHHHHHHHHHHHHhCCCEEEEEEccCCH
Confidence 99999999999999999976421346899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCccCccCCCCCCceeEEEEEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceee
Q 011433 187 NERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVT 266 (486)
Q Consensus 187 ~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~ 266 (486)
+++.+|++||++++++||||+||||++|+|+|+|+.++++|||||||+||++|||++++||.|||+|+++|+||+||+||
T Consensus 162 ~~~~~l~~Ai~ea~~~g~lG~nilg~~~~~~I~V~~g~g~Y~~GeEtaLi~sleG~~~~pr~kpp~Pa~~Gl~g~PTvVn 241 (461)
T PLN03132 162 NERLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANVGLYGCPTTVT 241 (461)
T ss_pred HHHHHHHHHHHHHHHcCCccccccCCCCCceEEEEECCCcCcCCHHHHHHHHHhCCccCCCCCCCCCccccccCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHcCchhhhhcCCCCCCCcEEEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCC
Q 011433 267 NVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSS 346 (486)
Q Consensus 267 NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s 346 (486)
||||+++|++|+++|.+||+++|+++++|||+|||||+|++|||||||+|||++|||+++|||+.++|+++++|++||+|
T Consensus 242 NVETla~v~~i~~~G~~~f~~~G~~~~~gtkl~tvSG~V~~Pg~~Evp~Gt~l~eli~~~~GG~~~g~~~~~~vi~GG~s 321 (461)
T PLN03132 242 NVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSS 321 (461)
T ss_pred cHHHHHHHHHHHHhChHHHHhcCCCCCCceEEEEEecccCCCeeEEEeCCCCHHHHHHHHcCCCCCCccccceEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999987899999876679999999999
Q ss_pred CCccccccccccccChhHHhhhccccccceEEeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCC
Q 011433 347 VPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGN 426 (486)
Q Consensus 347 ~p~~~~~~~~d~~~d~d~l~~~g~~~Gtg~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~ 426 (486)
+++++.+.++|++||||+|.++|+++|||+|||||+++|||++++++++|+++||||||+|||+|++|+.++|++|.+|+
T Consensus 322 ~~~l~~~~~~~~~ld~~~l~~~Gs~lGsGgviV~de~~~~v~~~~~~~~F~a~ESCGqCtPCReGt~~l~~iL~ri~~G~ 401 (461)
T PLN03132 322 VPLLPKKICDDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVGN 401 (461)
T ss_pred cccccHHHhCCCCCCHHHHHhcCCCcCcceEEEECCCCCHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHcCC
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhHHHHHHHHHhchhcccccc
Q 011433 427 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERELLEA 484 (486)
Q Consensus 427 ~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe~hi~~~~c~~~~~~ 484 (486)
++++|+|+|+++++.|.++|+|+||+++++||+|+|++|++||++|++++.....+-+
T Consensus 402 g~~~Dld~L~~la~~m~~~s~C~LG~~A~~pv~s~Lk~F~dEfe~hi~~~~~~~~~~~ 459 (461)
T PLN03132 402 AKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKERAERELLAA 459 (461)
T ss_pred CCHHHHHHHHHHHHHhhcCCcCcCcHhhHHHHHHHHHHHHHHHHHHHhccccHhhhhh
Confidence 9999999999999999999999999999999999999999999999987655544433
No 3
>KOG2658 consensus NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit [Energy production and conversion]
Probab=100.00 E-value=2.7e-131 Score=981.89 Aligned_cols=453 Identities=76% Similarity=1.286 Sum_probs=437.8
Q ss_pred ccccCCCCCCCC-CCCCCCCCCccccCCCCcceEEeccccccCCChhHHHhcCCchhcHHHHhcChHHHHHHHHHccccC
Q 011433 32 TQGASTASTPQP-PPPPPPPEKTHFGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRG 110 (486)
Q Consensus 32 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~ggy~~l~~~~~~~~e~ii~~i~~sGl~G 110 (486)
.+.....+.+++ |..+|++.||+|++|++++|||+|+||++||.|++++++|+|..+++++..+++||+++|++|||||
T Consensus 23 ~~~~~~~~~~~~~p~~ppp~~Kt~fG~l~d~dRiFtNLygrhd~rlkgA~~rGdw~~tkEil~kg~~wI~~evk~SgLRG 102 (478)
T KOG2658|consen 23 HVCKLGHTFPPPRPGNPPPQLKTKFGPLADEDRIFTNLYGRHDWRLKGALARGDWHKTKEILLKGPDWIVNEVKTSGLRG 102 (478)
T ss_pred CccccCCCCCCCCCCCCCcccccccCCccchhhhhhhhhhccchhhhhhhhccchHhHHHHHHhCcHHHHHHHHhhcccc
Confidence 333344445555 5567788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCCCCCCCCcEEEEEccCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHH
Q 011433 111 RGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERK 190 (486)
Q Consensus 111 ~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~ 190 (486)
||||||||+.||++++++.++++|||||||||+||++||||.||+|+||++|||++|+++|+||..+|||||++|.++..
T Consensus 103 RGgaGFpsGlKw~fm~k~sd~rpk~lvVNadEgepGtcKDReilRHdPHKliEG~liagram~a~aayiyIR~efynEa~ 182 (478)
T KOG2658|consen 103 RGGAGFPSGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLIEGCLIAGRAMGASAAYIYIRGEFYNEAC 182 (478)
T ss_pred CCCCCCCccceehhccCCCCCCCcEEEEECCCCCCCccccHHHhccCcHHhhhhhhhhhhhcccceeEEEehhhhHHHHH
Confidence 99999999999999998777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCccCccCCCCCCceeEEEEEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHH
Q 011433 191 NLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVET 270 (486)
Q Consensus 191 ~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET 270 (486)
.||+||.|||++||||||.||++++||+.||+++++|+|||||+||+||+|+.+.||.|||||+++|+||+||+|.||||
T Consensus 183 nlq~ai~eAY~agllGkn~cGtg~~fdv~vhrGagaYicGEEtAlIesLeGk~gkPr~kppf~a~~G~Fg~Pt~V~NvET 262 (478)
T KOG2658|consen 183 NLQKAIIEAYAAGLLGKNACGTGYDFDVFVHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADSGLFGCPTTVTNVET 262 (478)
T ss_pred HHHHHHHHHHHhcccccccccCCcCeeEEEecCCcceeeccHHHHHHHhhccCCCCCCCCCCccccccccCCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhhhhcCCCCCCCcEEEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCcc
Q 011433 271 VAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLL 350 (486)
Q Consensus 271 ~a~v~~iv~~G~~~~~~~G~~~~~gtk~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~ 350 (486)
++++|.|+++|..||+++|++++.|||+|++||+|++|+++|..|.+|++||||+||||+.+||+++.+||+||+|+|++
T Consensus 263 Vav~PtI~rrG~~wfasfGR~~N~GTKLf~iSG~Vn~PctVEeeMSiPlKdLIErhaGGV~GGWdnLlaiiPGG~stpli 342 (478)
T KOG2658|consen 263 VAVSPTICRRGGKWFASFGRPRNRGTKLFCISGHVNNPCTVEEEMSIPLKDLIERHAGGVRGGWDNLLAIIPGGSSTPLI 342 (478)
T ss_pred eecchHHHhccchhhhhcCCCCCCCceEEEeccccCCCcchHHHhCCcHHHHHHHhcCCcccchhheeeeccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccChhHHhhhccccccceEEeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHH
Q 011433 351 PKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLE 430 (486)
Q Consensus 351 ~~~~~~d~~~d~d~l~~~g~~~Gtg~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~ 430 (486)
++.+++++.||||+|.++++++|||+||||++++++++.+.+++.||++|||+||+|||+|+.|+.++|.++.+|++.++
T Consensus 343 ~kn~c~~vlmDFD~L~a~~S~lGtgavIVm~k~tdi~~~iarl~~FykhesC~qCt~CReG~~w~~~im~rfv~G~a~~~ 422 (478)
T KOG2658|consen 343 PKNVCEQVLMDFDSLKAAQSGLGTGAVIVMNKSTDIVKAIARLIKFYKHESCGQCTPCREGVEWLNEIMARFVDGQAHPS 422 (478)
T ss_pred ChhhHhhhhcchHHHHhhhccCCceeEEEEeCCCcHHHHHHHHHHHhccccCCCCCchhhhhhHHHHHHHHHhcCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhHHHHHHHHHhchhcccccc
Q 011433 431 EIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRIKEHAERELLEA 484 (486)
Q Consensus 431 Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe~hi~~~~c~~~~~~ 484 (486)
++|+|.+++++|++.++|+|++++++|++++++|||+|+|+++++....+-..+
T Consensus 423 eid~~~e~~kqieghtiCalgd~aa~~vqgliR~Fr~~ie~R~~~~a~~~~~~~ 476 (478)
T KOG2658|consen 423 EIDMLFEISKQIEGHTICALGDSAAWPVQGLIRHFRPEIEERMKKRAKQHQARA 476 (478)
T ss_pred HHHHHHHHHhccCCceeeeeccccccchHHHHHhCcHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999988777665544
No 4
>PTZ00304 NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Probab=100.00 E-value=3.9e-124 Score=985.27 Aligned_cols=422 Identities=82% Similarity=1.395 Sum_probs=409.3
Q ss_pred ccCCCCcceEEeccccccCCChhHHHhcCCchhcHHHHhcChHHHHHHHHHccccCCCCCCCccccccccCCCCC-CCCC
Q 011433 55 FGGLKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVS-DGRP 133 (486)
Q Consensus 55 ~~~~~~~~~i~~~~~g~~~~~~~~~~~~ggy~~l~~~~~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~-~~~~ 133 (486)
|++|.+.+++|.+.+....|+|++|+++|||++|++++.|+|++|+++|++||||||||||||||+||+++++.. +.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~y~~~ggy~~l~~~~~~~p~~ii~~Vk~aGL~GrGGAGFPT~~Kw~~~~~~~~~~~~ 98 (461)
T PTZ00304 19 HGGLKDQDRIFTNLYRDFDTYIDGALKRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKVKPDGRP 98 (461)
T ss_pred CCCCCccceeecccCCCCCCCHHHHHHcCCHHHHHHHHhcCHHHHHHHHHHhCCCCCCCcCCchHHHhhhhhhcccCCCC
Confidence 778888899999999988889999999999999999999999999999999999999999999999999986421 2468
Q ss_pred cEEEEEccCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCC
Q 011433 134 SYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSG 213 (486)
Q Consensus 134 ~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g 213 (486)
+||||||+||||++||||+||+++||+|||||.|+++++||+++|||||+||++++++|++||++++++||||+|++|++
T Consensus 99 ~ylv~Na~E~EP~~~kDr~Lm~~~P~~vieG~~i~a~a~gA~~~~I~Ir~e~~~~~~~l~~Ai~e~~~~g~lg~n~~~~~ 178 (461)
T PTZ00304 99 SYLVVNADESEPGTCKDREIMRHDPHKLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLGKNACGSG 178 (461)
T ss_pred CEEEEECCCCCccchhcHHHHhHCHHHHHHHHHHHHHHhCCCEEEEEEccCcHHHHHHHHHHHHHHHHcCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCC
Q 011433 214 YDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNN 293 (486)
Q Consensus 214 ~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~ 293 (486)
++++|+|+.++++|||||||+||++|||++++||.|||+|+++|+||+||+||||||+++|++|+++|..||+++|++.+
T Consensus 179 ~~~~i~v~~gag~Y~~GeEtaLi~sleG~~~~pr~kpp~Pa~~Gl~g~PTvVnNVeTla~v~~i~~~G~~w~~~~G~p~~ 258 (461)
T PTZ00304 179 YDFDVYVHRGAGAYICGEETALIESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPNN 258 (461)
T ss_pred CCeEEEEEECCCcCCCCHHHHHHHHHhCCcCCCCCCCCCccccCccCCCCeeecHHHHHHHHHHHHhhHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCccccccccccccChhHHhhhccccc
Q 011433 294 SGTKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLG 373 (486)
Q Consensus 294 ~gtk~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d~~~d~d~l~~~g~~~G 373 (486)
+|||+|||||+|++|+|||||+|||++|||+++|||+.++|+++++||+||+|+|||+.+.+++++||||++.++|+++|
T Consensus 259 ~gtkl~tVSG~V~~Pg~~evp~Gtpl~eli~~~aGG~~~g~~~~~~vi~GG~s~~~l~~~~~~~~~~d~~~l~~~Gs~lG 338 (461)
T PTZ00304 259 AGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLCVIPGGSSVPLIPKEICDNVLMDFDALKEVQSGLG 338 (461)
T ss_pred CceEEEEEecccCCCeeEEEeCCCCHHHHHHHHcCCCCCCCCcccEEEECCCCCCccCHHHhcCCCcChhhHHhcCcccC
Confidence 99999999999999999999999999999987899999886678999999999999999998889999999999999999
Q ss_pred cceEEeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCcc
Q 011433 374 TAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDA 453 (486)
Q Consensus 374 tg~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~ 453 (486)
||+|||||+++|+|+++.++++|+++||||||+|||+||+|++++|++|.+|+++++|+|+|+++++.|.++|+|+||++
T Consensus 339 tGgvIVld~~~~~V~~~~~~~~F~a~ESCGQCtPCReGt~~L~~iL~~i~~G~g~~~Dld~L~~la~~i~g~s~CaLG~~ 418 (461)
T PTZ00304 339 TAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQIEGHTICALGDA 418 (461)
T ss_pred cceEEEECCCCCHHHHHHHHHHHHHhhhCCCCCChHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcCcccHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhHHHHHHHHHhc
Q 011433 454 AAWPVQGLIRHFRPELERRIKEH 476 (486)
Q Consensus 454 a~~pv~s~I~~FrdEfe~hi~~~ 476 (486)
+++||+++|+||+|||++||...
T Consensus 419 A~~pv~s~l~~F~dEfe~~i~~~ 441 (461)
T PTZ00304 419 AAWPVQGLIRHFRPEIEERIERY 441 (461)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999753
No 5
>PRK13596 NADH dehydrogenase I subunit F; Provisional
Probab=100.00 E-value=1e-120 Score=956.75 Aligned_cols=421 Identities=76% Similarity=1.346 Sum_probs=406.0
Q ss_pred CCCcceEEeccccccCCChhHHHhcCCchhcHHHHhcChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCCcEEE
Q 011433 58 LKDEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLV 137 (486)
Q Consensus 58 ~~~~~~i~~~~~g~~~~~~~~~~~~ggy~~l~~~~~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lV 137 (486)
|+++.++|.+.+....+++++|+++|||++|++++.|++++|+++|++||||||||||||||+||+++++..+.+++|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~y~~~ggy~~l~~~~~~~~~~l~~~v~~aGl~GrGGAGFPt~~K~~~~~~~~~~~~~~vv 81 (433)
T PRK13596 2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLV 81 (433)
T ss_pred CCcccchhhccCCCCCCCHHHHHHcCCHHHHHHHHhcCHHHHHHHHHHcCCCCCCCCcchhHHHHHhcccccCCCCCEEE
Confidence 46677888888888888999999999999999999999999999999999999999999999999987642124689999
Q ss_pred EEccCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCcee
Q 011433 138 VNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFD 217 (486)
Q Consensus 138 vNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~ 217 (486)
|||+||||++||||+||+++||+|||||.|+++++||+++|||||++|+++++.|++||++++++|+||+||+|++++|+
T Consensus 82 vNa~E~EP~~~kDr~Lm~~~p~~vieG~~i~a~avgA~~~~I~ir~~~~~~i~~l~~ai~~~~~~~~lg~~i~g~~~~~~ 161 (433)
T PRK13596 82 VNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFD 161 (433)
T ss_pred EECCCCCccchhhHHHHHHCHHHHHHHHHHHHHHhCCCeEEEEECcCCHHHHHHHHHHHHHHHhcCccccccccCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCCCCcE
Q 011433 218 VHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTK 297 (486)
Q Consensus 218 i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk 297 (486)
|+|+.++++||||||++||++|||++++||.|||+|+++|+||+||+||||||+++|++|+++|.+||+++|+++++|||
T Consensus 162 i~v~~~~~~Y~~GeEtaLi~sleG~~~~pr~~Pp~P~~~G~~g~Pt~V~NVeT~a~v~~~v~~G~~~~~~~G~~~~~gtk 241 (433)
T PRK13596 162 IYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTK 241 (433)
T ss_pred EEEEECCCcCCCCHHHHHHHHHcCCcCCCCCCCCCcccccCcCCCceeecHHHHHHHHHHHHhChHHHhhcCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCccccccccccccChhHHhhhccccccceE
Q 011433 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAV 377 (486)
Q Consensus 298 ~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d~~~d~d~l~~~g~~~Gtg~I 377 (486)
+|||||+|++|+|||||+|||++|||+.+|||+.++|+++++|++||+|+|||+.+.+.++++||+++.++|+++|||+|
T Consensus 242 lvtVsG~V~~Pg~~evp~Gt~l~~li~~~~GG~~~g~~~~~~vi~GG~s~~~l~~~~~~~~~~d~~~l~~~Gs~lGtggv 321 (433)
T PRK13596 242 LFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAV 321 (433)
T ss_pred EEEEecccCCCeeEEEeCCCCHHHHHHHHcCCCCCCCccccEEEECCCCCCCcCHHHhCCCCcChhhHHhcCCccccceE
Confidence 99999999999999999999999999877999998766789999999999999999887899999999999999999999
Q ss_pred EeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHH
Q 011433 378 IVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWP 457 (486)
Q Consensus 378 IVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~p 457 (486)
+|||+++|+++.+.++++|+++||||||+|||+|++|+.++|++|.+|+++++|+++|+++++.|.+.|+|+||+++++|
T Consensus 322 iVld~~~~~v~~~~~~~~f~~~ESCGQCtPCR~Gt~~l~~il~~i~~G~g~~~dl~~L~~ia~~m~~~s~C~lG~~a~~p 401 (433)
T PRK13596 322 IVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAWP 401 (433)
T ss_pred EEECCCCCHHHHHHHHHHHHhhhhCCCCCCchhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCcCcccHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHhchh
Q 011433 458 VQGLIRHFRPELERRIKEHAE 478 (486)
Q Consensus 458 v~s~I~~FrdEfe~hi~~~~c 478 (486)
++++|++|++||++|+.++..
T Consensus 402 v~s~l~~F~~efe~hi~~~~~ 422 (433)
T PRK13596 402 IQGLIRHFRPEIEERIDQYTA 422 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999976544
No 6
>PRK11278 NADH dehydrogenase I subunit F; Provisional
Probab=100.00 E-value=2.4e-116 Score=926.17 Aligned_cols=419 Identities=40% Similarity=0.723 Sum_probs=393.6
Q ss_pred eEEeccccccCCChhHHHhcCCchhcHHHH-hcChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCCcEEEEEcc
Q 011433 63 RIFTNLYGMHDPFLKGAMKRGDWHRTKDLV-LKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNAD 141 (486)
Q Consensus 63 ~i~~~~~g~~~~~~~~~~~~ggy~~l~~~~-~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa~ 141 (486)
.++.+.+...+..+++|+++|||.+|++.+ .|++++++++|++||||||||||||||+||+++++....+++||||||+
T Consensus 14 ~~~~~~~~~~~~~l~~y~~~ggy~~~~~~~~~~~~~~li~~v~~aGl~GrGGAgFPt~~K~~~~~~~~~~~~~~vviNg~ 93 (448)
T PRK11278 14 LTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNAD 93 (448)
T ss_pred eEEEecCCCCcccHHHHHhcCCHHHHHHHHHhCCHHHHHHHHHHcCcCcCCCCccchHHHHhhcccccCCCCCEEEEECC
Confidence 344444444445799999999999999988 5999999999999999999999999999998765421126899999999
Q ss_pred CCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEEE
Q 011433 142 ESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIH 221 (486)
Q Consensus 142 E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~ 221 (486)
||||++||||+||+++||+|||||.|+++++||+++|||||+||++++++|++||+|++++||||+||+|++++++|+|+
T Consensus 94 E~EP~~~kDr~Lm~~~p~~vieG~~i~a~a~gA~~~~I~i~~~~~~ai~~l~~Ai~e~~~~g~lg~~i~g~~~~~~i~v~ 173 (448)
T PRK11278 94 EMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVH 173 (448)
T ss_pred CCCCccccCHHHHhHCHHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHHcCcccccccCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCC--CCCCCcEEE
Q 011433 222 YGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGR--KNNSGTKLF 299 (486)
Q Consensus 222 ~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~--~~~~gtk~v 299 (486)
.++++||||||++||++|||++++||.|||+|+++|+||+||+||||||+++|++|+++|.+||+++|+ ++++|||+|
T Consensus 174 ~~~~~Y~~GeEtaLi~sl~G~~~~pr~kpp~P~~~G~~g~PT~V~NVeTla~v~~iv~~G~~~~~~~G~~~~~~~Gtklv 253 (448)
T PRK11278 174 TGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKGKSKDAGTKLM 253 (448)
T ss_pred ECCCCCcCCHHHHHHHHHcCCcCCCCCCCCCcccccCcCCCceeeCHHHHHHHHHHHHhChHHHHhcCcCCCCCCccEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 778999999
Q ss_pred EEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCccccccccccccChhHHhhhccccccceEEe
Q 011433 300 CVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIV 379 (486)
Q Consensus 300 tVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d~~~d~d~l~~~g~~~Gtg~IIV 379 (486)
||||+|++|+|||||+|||++|||+++|||+.++ .++++|++||++++++..+.+ |+++||++|.++|+++|+++|+|
T Consensus 254 tVsG~V~~Pg~~evp~Gt~l~eli~~~~GG~~~~-~~~k~vi~GGp~~g~~~~~~l-d~p~~~~~l~~~gs~lG~g~viV 331 (448)
T PRK11278 254 GFSGRVKNPGLWELPFGTTAREILEDYAGGMRDG-LKFKAWQPGGAGTDFLTEAHL-DLPMEFESIGKAGSRLGTALAMA 331 (448)
T ss_pred EEecccCCCeeEEEeCCCcHHHHHHHHcCCCCCC-CceeEEEECCCccCccCHHHc-CccccHHHHHHhCCCcCceEEEE
Confidence 9999999999999999999999998779999877 468899999988887776555 69999999999999999999999
Q ss_pred ecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhc-cCCCCCCCccchHHH
Q 011433 380 MDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIE-GHTICALGDAAAWPV 458 (486)
Q Consensus 380 ld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i~-~~s~C~lg~~a~~pv 458 (486)
+|++.|++++++++++|+++||||||+|||+||+|++++|++|..|+++++|+++|.++++.|. ++|+|+|++++++|+
T Consensus 332 ~D~~~~~v~~~~~~~~F~A~ESCGQCtPCReGtprl~~il~~i~~G~~~~~dl~~L~~l~~~m~~~~s~C~lg~~A~~pv 411 (448)
T PRK11278 332 VDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGAVEPL 411 (448)
T ss_pred CCCCcCHHHHHHHHHHHhhcccCCCCCChHhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCccCcCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999996 689999999999999
Q ss_pred HHHHHhhHHHHHHHHHhchhccccc
Q 011433 459 QGLIRHFRPELERRIKEHAERELLE 483 (486)
Q Consensus 459 ~s~I~~FrdEfe~hi~~~~c~~~~~ 483 (486)
+++|++|++||++|+..+.|..-+-
T Consensus 412 ~s~l~~F~~ef~~hi~~~~~~~~~~ 436 (448)
T PRK11278 412 QSAIKYFREEFEAGIKQPFSNTHLI 436 (448)
T ss_pred HHHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999888876543
No 7
>TIGR01959 nuoF_fam NADH-quinone oxidoreductase, F subunit. This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2.
Probab=100.00 E-value=1.2e-113 Score=901.44 Aligned_cols=408 Identities=62% Similarity=1.047 Sum_probs=390.2
Q ss_pred EEeccccccCCChhHHHhcCCchhcHHHHh-cChHHHHHHHHHccccCCCCCCCccccccccCCCCCC-CCCcEEEEEcc
Q 011433 64 IFTNLYGMHDPFLKGAMKRGDWHRTKDLVL-KGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSD-GRPSYLVVNAD 141 (486)
Q Consensus 64 i~~~~~g~~~~~~~~~~~~ggy~~l~~~~~-~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~-~~~~~lVvNa~ 141 (486)
+|.+.....++++++|+++|||.+|++++. +++++++++|++||||||||||||||+||+.+++. . .+++||||||+
T Consensus 2 ~~~~~~~~~~~~~~~y~~~ggy~~l~~~~~~~~~~~i~~~i~~aGl~G~GGAgFPt~~K~~~~~~~-~~~~~~~vvvN~~ 80 (411)
T TIGR01959 2 LTTNLDNPESWTLEEYEKRGGYDALRKALEEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKD-DSPKPKYLVCNAD 80 (411)
T ss_pred cccCCCCCCccCHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHcCCCcCCCCCCchhhHHHhcccc-cCCCCCEEEEECc
Confidence 355555566669999999999999999997 99999999999999999999999999999876542 2 36899999999
Q ss_pred CCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEEE
Q 011433 142 ESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIH 221 (486)
Q Consensus 142 E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~ 221 (486)
||||++|+|++||+++||+||||+.|+++++||+++|||||++|+++++.|++||++++++||||+||+|++++++|.++
T Consensus 81 E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~i~i~~~~~~~i~~l~~ai~~~~~~~llg~~i~g~~~~~~i~~~ 160 (411)
T TIGR01959 81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160 (411)
T ss_pred CCCccchhhHHHHHHCHHHHHHHHHHHHHHhCCCEEEEEEccCCHHHHHHHHHHHHHHHHcCCccccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCCCCcEEEEE
Q 011433 222 YGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCV 301 (486)
Q Consensus 222 ~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk~vtV 301 (486)
.++++||||||++||++++|++++||.+||+|+++|+||+||+||||||+++|++|+++|.|||+++|+++++|||+|||
T Consensus 161 ~~~~~Y~~Gee~~Li~~l~G~~~~p~~~pp~p~~~G~~g~Pt~V~NveT~~~v~~~v~~G~~~~~~~g~~~~~gtr~vtV 240 (411)
T TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240 (411)
T ss_pred ECCCcCCCCHHHHHHHHHcCCcCCCCCCCCCchhccCcCCCceeecHHHHHHHHHHHHhCHHHHHhcCCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCccccccccccccChhHHhhhccccccceEEeec
Q 011433 302 SGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMD 381 (486)
Q Consensus 302 sG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d~~~d~d~l~~~g~~~Gtg~IIVld 381 (486)
||+|++|+|||||+|||++|||+++|||+++++ ++++|++||+++++++++...|.++|||++.++|+++|||+|+|||
T Consensus 241 sG~V~~Pg~~evp~Gt~l~~li~~~~GG~~~~~-~~~~vi~GGp~~g~~~~~~~~~~~ld~d~l~~~gs~lGtggiiVl~ 319 (411)
T TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319 (411)
T ss_pred ecccCCCceEEEeCCCCHHHHHHHHcCCCCCCC-cceEEEECCCCCCcccHHHhcCCccCHHHHHhcCCccCceeEEEEC
Confidence 999999999999999999999986799999873 6899999999999888665557999999999999999999999999
Q ss_pred CCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHH
Q 011433 382 KSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGL 461 (486)
Q Consensus 382 ~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~ 461 (486)
+++|++++++++++|+++||||||+|||+||++++++|+++.+|+++++|+++|+++++.|..+|+|+||+++++|++++
T Consensus 320 ~d~~~v~~~~~~~~f~a~eSCGqC~PCr~Gt~~l~~~l~~i~~G~~~~~dl~~L~~la~~m~~~s~C~lg~~a~~pv~s~ 399 (411)
T TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQSA 399 (411)
T ss_pred CcchHHHHHHHHHHHHhCccCCCCcCchhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHH
Q 011433 462 IRHFRPELERRI 473 (486)
Q Consensus 462 I~~FrdEfe~hi 473 (486)
|++|+|||++|+
T Consensus 400 l~~F~de~~~hi 411 (411)
T TIGR01959 400 IKHFRDEFEAHI 411 (411)
T ss_pred HHHHHHHHHhhC
Confidence 999999999996
No 8
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=100.00 E-value=6.6e-62 Score=537.21 Aligned_cols=320 Identities=22% Similarity=0.302 Sum_probs=272.6
Q ss_pred hcHHHHhcChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCCcEEEEEccCCCCcchhhhHHhhcChHHHHHHHH
Q 011433 87 RTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCL 166 (486)
Q Consensus 87 ~l~~~~~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~ 166 (486)
.+.++..+++++|++.|++|||+|+||||||||+||+... .+++||||||+|||||+++|++||+++|++||+|+.
T Consensus 118 ~~~d~~~~~~e~l~~~i~~aGIvG~GGAgFPt~~Kl~~~~----~~~~~lIiNg~EcEP~~t~D~~Lm~e~~~~ii~Gi~ 193 (695)
T PRK05035 118 PWADYRQLSPEELIERIRQAGIAGLGGAGFPTAVKLQPGG----DKIETLIINGAECEPYITADDRLMRERADEIIEGIR 193 (695)
T ss_pred cccchhhCCHHHHHHHHHHcCCCCCCCCcCcchhhhcCCC----CCCCEEEEECCCCCCCCcchHHHHhHhHHHHHHHHH
Confidence 3445667899999999999999999999999999998642 468999999999999999999999999999999999
Q ss_pred HHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEEEEccCcCcCccHHHHHHHHcCCCCCC
Q 011433 167 IAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKP 246 (486)
Q Consensus 167 i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~p 246 (486)
|+++++|++++||+|+++++++++.|++++.+. .+|+|+.+++.||+|+|++||++|+|+++++
T Consensus 194 il~~~~~a~~~~I~Ie~nkp~ai~~l~~a~~~~----------------~~i~V~~~p~~YP~G~ek~LI~~ltGr~vP~ 257 (695)
T PRK05035 194 ILAHLLQPKEVLIGIEDNKPEAIAALRAALAGA----------------DDIRVRVIPTKYPSGGEKQLIQILTGKEVPS 257 (695)
T ss_pred HHHHHhCCCEEEEEEeCCCHHHHHHHHHHHhcC----------------CCEEEEECCCCCCCCcHHHHHHHHhCCcCCC
Confidence 999999999999999999999999999998651 3688999999999999999999999999876
Q ss_pred CCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCCCCcEEEEEEcc-CCCceeEEEeCCCCHHHHHHH
Q 011433 247 RLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGH-VNKPCTVEEEMSIPLKELIDR 325 (486)
Q Consensus 247 r~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk~vtVsG~-V~~Pg~~evpiGtpl~eli~~ 325 (486)
. ++|++.|+ +|+||+|+++|++++++|.||+ +|+|||+|+ |++|+|||||+||||++||+
T Consensus 258 g---~~P~~~Gv-----vV~NV~T~~aI~~av~~G~Pl~----------~RiVTVtG~~v~~P~nv~v~iGTpv~~Ll~- 318 (695)
T PRK05035 258 G---GRPADIGV-----LMQNVGTAYAIKRAVIDGEPLI----------ERVVTLTGEAVARPGNVWARLGTPVRHLLN- 318 (695)
T ss_pred C---CCCCcCCe-----EEEcHHHHHHHHHHHHcCCcce----------EEEEEEECcccCCCceEEEeCCCCHHHHHH-
Confidence 5 68999999 9999999999999999999998 899999998 99999999999999999998
Q ss_pred ccCCCcCCCCcccEEecCCCCCCccccccccccccChhHHhhhccccccceEEeecCCccHHHHHHHHhhhhccCcCCCC
Q 011433 326 HCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQC 405 (486)
Q Consensus 326 ~~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d~~~d~d~l~~~g~~~Gtg~IIVld~~~ciV~~~~~~~~F~~~ESCGqC 405 (486)
++||..+ ...+||+|| ||||.... ++| .+++++|++|+|++.+.- .....+..|.+|
T Consensus 319 ~~G~~~~---~~~rvI~GG---PmmG~~~~-----~~d----~pv~K~t~~il~~~~~~~--------~~~~~e~~CI~C 375 (695)
T PRK05035 319 QAGFKPD---ADQRVIMGG---PMMGFTLP-----SLD----VPVVKTTNCLLAPSATEL--------PPPPPEQPCIRC 375 (695)
T ss_pred hcCCCCC---CCceEEECC---CCcCcccc-----cCC----CCeecceeEEEecccccc--------cCCCchhhcCCc
Confidence 6888764 246899999 99998654 333 478999999999876431 112356899999
Q ss_pred ccchhhHHHHH--HHHHHHHcCCCCHHhHHHHH--HHHHHhccCCCCCCCccchHHHHHHHHhhHHHHHHHH
Q 011433 406 TPCREGTGWLW--MIMERLKVGNAKLEEIDMLQ--EVTKQIEGHTICALGDAAAWPVQGLIRHFRPELERRI 473 (486)
Q Consensus 406 ~PCReG~~~l~--~iL~ri~~G~~~~~Dld~L~--ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe~hi 473 (486)
+-|.+.||.-. ..|.+.... .|++.+. .+.+|+ +|+.|.+.|++.+|+.+++++.+.++.+.-
T Consensus 376 G~Cv~aCP~~llP~~l~~~~~~----~d~~~~~~~~~~~Ci-eCG~C~~vCPs~Iplv~~~r~aK~~i~~~~ 442 (695)
T PRK05035 376 GACADACPASLLPQQLYWFAKA----EEHDKAQEYNLFDCI-ECGACAYVCPSNIPLVQYYRQAKAEIRAIE 442 (695)
T ss_pred ccHHHHCCccchhhhHHHhhhc----cccchhhhcChhhcc-ccCcccccCCCCCcHHHHHHHHHHHHHHhh
Confidence 99999999522 122222221 2333332 345677 599999999999999999999988876654
No 9
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=100.00 E-value=1.4e-61 Score=512.89 Aligned_cols=316 Identities=22% Similarity=0.349 Sum_probs=269.3
Q ss_pred cHHHHhcChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCCcEEEEEccCCCCcchhhhHHhhcChHHHHHHHHH
Q 011433 88 TKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLI 167 (486)
Q Consensus 88 l~~~~~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i 167 (486)
..++..+++++|++.|++|||||+||||||||+||...+ ..+++||||||+||||++++|++||+++||+|++|+.+
T Consensus 113 ~~~~~~~~~e~~~~~i~~aGl~G~GGAgfPt~~K~~~~~---~~~~~~liiN~~E~EP~~~~D~~lm~~~~~~i~~G~~~ 189 (435)
T TIGR01945 113 IPDFENLSPEEILEKIRAAGIVGLGGATFPTHVKLNPPP---EKKIETLIINGAECEPYLTCDDRLMRERAEEIIGGIRI 189 (435)
T ss_pred ccChhhCCHHHHHHHHHHcCCCCCCccccchhhhccCCC---CCCCCEEEEeCCCCCcchhhhHHHHhHCHHHHHHHHHH
Confidence 345667999999999999999999999999999998643 35689999999999999999999999999999999999
Q ss_pred HHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEEEEccCcCcCccHHHHHHHHcCCCCCCC
Q 011433 168 AGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPR 247 (486)
Q Consensus 168 ~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr 247 (486)
+++++||+++||||+++|+++++.|++++++. +++|+.++++||||+|++||++|+|++.+++
T Consensus 190 ~~~~~~a~~~~i~i~~~~~~~i~~l~~~~~~~-----------------~i~v~~~~~~Yp~G~e~~li~~l~G~~~p~~ 252 (435)
T TIGR01945 190 LLKILGVKKVVIGIEDNKPEAIAALKKALGGY-----------------NIKVRVLPTKYPQGGEKQLIYALTGREVPSG 252 (435)
T ss_pred HHHHhCCCEEEEEEeCCCHHHHHHHHHHHhhC-----------------CeEEEECCCcccCCHHHHHHHHHhCCccCCC
Confidence 99999999999999999999999999988652 4789999999999999999999999997543
Q ss_pred CCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCCCCcEEEEEEcc-CCCceeEEEeCCCCHHHHHHHc
Q 011433 248 LKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGH-VNKPCTVEEEMSIPLKELIDRH 326 (486)
Q Consensus 248 ~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk~vtVsG~-V~~Pg~~evpiGtpl~eli~~~ 326 (486)
++|++.|+ +|+||||+++|++++++|.||+ +|+|||||+ |++|+||+||+|||++|||+ +
T Consensus 253 ---~~p~~~G~-----~V~Nv~T~~~i~~~~~~G~p~~----------~r~vtVsG~~v~~p~~~~v~iGt~~~~li~-~ 313 (435)
T TIGR01945 253 ---GLPADIGV-----VVQNVGTAFAIYEAVVNGKPLI----------ERVVTVTGDAIRRPKNLWVLIGTPVSDILA-F 313 (435)
T ss_pred ---CCchhcCe-----EEEcHHHHHHHHHHHHcCcccE----------EEEEEEeCCccCCCceEEEeCCCCHHHHHH-H
Confidence 79999999 9999999999999999999998 899999998 99999999999999999998 7
Q ss_pred cCCCcCCCCcccEEecCCCCCCccccccccccccChhHHhhhccccccceEEeecCCccHHHHHHHHhhhhccCcCCCCc
Q 011433 327 CGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCT 406 (486)
Q Consensus 327 ~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d~~~d~d~l~~~g~~~Gtg~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~ 406 (486)
+||+.++ ..+||+|| ||||.... |+ +.++++++++++|++.+.. .-.....|.+|+
T Consensus 314 ~gg~~~~---~~~vi~GG---pm~G~~~~-----~~----d~pv~k~t~giLv~~~~~~---------~~~~~~~Ci~Cg 369 (435)
T TIGR01945 314 CGGFREK---PERLIMGG---PMMGLALP-----SL----DVPVTKGTSGILALDKEET---------PESPEKPCIRCG 369 (435)
T ss_pred cCCCCCC---CcEEEECC---CCCccchh-----hh----ccccccCCCceEeeccccc---------ccccCCcCcCcc
Confidence 9998753 46899999 99988643 23 2567899999999998632 115678999999
Q ss_pred cchhhHHHH--HHHHHHHHcCCCCHHhHHHHHH--HHHHhccCCCCCCCccchHHHHHHHHhhHHHHHH
Q 011433 407 PCREGTGWL--WMIMERLKVGNAKLEEIDMLQE--VTKQIEGHTICALGDAAAWPVQGLIRHFRPELER 471 (486)
Q Consensus 407 PCReG~~~l--~~iL~ri~~G~~~~~Dld~L~e--la~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe~ 471 (486)
.|.+.||.- ...+.+... ..+++.+.+ +.+|+ +|+.|.+.|++.+++.++|+.+++++.+
T Consensus 370 ~C~~vCP~~l~p~~l~~~~~----~~~~~~~~~~~~~~C~-~Cg~C~~vCP~~i~l~~~ir~~k~~l~~ 433 (435)
T TIGR01945 370 KCVQVCPMNLLPQQLNWLAL----ADEFDEAEEHNLMDCI-ECGCCSYVCPSNIPLVQYIRQAKAKLRA 433 (435)
T ss_pred chhhhCccchhhHHHHHHhh----hcccchhhcCCCCcCC-cCCCcccccCCCCCHHHHHHHHHHHHHh
Confidence 999999852 222222111 123333322 23455 5999999999999999999999998854
No 10
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=100.00 E-value=5.6e-57 Score=473.15 Aligned_cols=330 Identities=22% Similarity=0.334 Sum_probs=284.5
Q ss_pred ChhHHHhcCCchhcHHHHhcChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCCcEEEEEccCCCCcchhhhHHh
Q 011433 75 FLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIM 154 (486)
Q Consensus 75 ~~~~~~~~ggy~~l~~~~~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa~E~EP~~~~D~~lm 154 (486)
.+|+|... ++.+++..+++++|++.|+++||+|.|||||||++|+... ..++++||+||+|||||+..|.+||
T Consensus 104 ~~~~w~e~---~p~~~~~~~s~e~LLe~I~qAGIvg~gga~fpT~~Kl~~~----~~ki~~LIinaaecEp~~~~d~~LM 176 (529)
T COG4656 104 GLDQWIEL---QPIEDFEGASPEELLEKIKQAGIVGLGGAGFPTAVKLQAG----CKKIETLIINAAECEPYITADDRLM 176 (529)
T ss_pred chhhheec---CCCcchhhCCHHHHHHHHHHcCccccCCCCCcchhhhccc----ccceeeeeeehhccCccccHhHHHH
Confidence 46777655 4556667899999999999999999999999999999874 3568999999999999999999999
Q ss_pred hcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEEEEccCcCcCccHHH
Q 011433 155 RHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETA 234 (486)
Q Consensus 155 ~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~~~~~~Yp~GeE~a 234 (486)
++++++|++|++|+++++++++++|+|+++++++++.++.++.+. -+|.|+.++++||.|.|++
T Consensus 177 ~e~a~eI~~Gi~il~~i~~~~~vvIaied~kp~ai~~l~~a~~~~----------------~~i~I~~lp~kYP~g~~k~ 240 (529)
T COG4656 177 REHAEEIVKGIQILRKILKPKEVVIAIEDNKPEAIAALRAALFGD----------------RDIKIHVLPTKYPSGGEKQ 240 (529)
T ss_pred HHHHHHHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHhccC----------------CceEEEEcCCCCCCchHHH
Confidence 999999999999999999999999999999999999999998652 2588999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCCCCcEEEEEEcc-CCCceeEEE
Q 011433 235 LLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGH-VNKPCTVEE 313 (486)
Q Consensus 235 Li~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk~vtVsG~-V~~Pg~~ev 313 (486)
|+..++|+++++. .+|.++|+ +|+||+|+++|++++.+|.|+. +|+|||+|+ |++|+|++|
T Consensus 241 li~~ltgr~vP~g---~lp~~vgv-----lv~NV~T~~aV~~AIv~~~Pli----------er~vTltG~av~~p~nv~V 302 (529)
T COG4656 241 LIKILTGREVPKG---GLPSDVGV-----LVQNVGTAYAVKRAIVDGKPLI----------ERVVTLTGDAVKRPKNVWV 302 (529)
T ss_pred HHHHHhCCcCCCC---CCCccccE-----EEechHHHHHHHHHHhcCCCeE----------EEEEEeecccccCCccEEE
Confidence 9999999999886 57999999 9999999999999999999997 899999995 999999999
Q ss_pred eCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCccccccccccccChhHHhhhccccccceEEeecCCccHHHHHHHH
Q 011433 314 EMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDVVDAIARL 393 (486)
Q Consensus 314 piGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d~~~d~d~l~~~g~~~Gtg~IIVld~~~ciV~~~~~~ 393 (486)
++|||+++||+ .|||..+ +...||+|| ||||.... ++| ++++++|++++|+++...
T Consensus 303 rIGTP~~~lL~-~~G~~~~---~~~~vi~gG---PmmG~~l~-----~ld----~PVtK~t~~Ll~~~~~e~-------- 358 (529)
T COG4656 303 RIGTPVSQLLN-EAGGIDT---KPYRVIMGG---PMMGFKLP-----TLD----APVTKTTNGLLALTKKEL-------- 358 (529)
T ss_pred ECCCcHHHHHH-HcCCCCC---CCceEEeCC---Cccccccc-----ccC----CceecccceEEecCcccc--------
Confidence 99999999999 6999885 356799999 99997553 333 689999999999999643
Q ss_pred hhhhccCcCCCCccchhhHHH--HHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhHHHHHH
Q 011433 394 SYFYKHESCGQCTPCREGTGW--LWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELER 471 (486)
Q Consensus 394 ~~F~~~ESCGqC~PCReG~~~--l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe~ 471 (486)
.+-....||.+|+.|.+.||. +-..|.++..+ +..|-.....+.+|| +|+.|++.|++.+|+.+++++.+.++.+
T Consensus 359 ~~~~~~~sCi~C~~C~d~CP~~Llp~ql~~~a~~--~~~~e~~~~~l~dCI-ECg~Ca~vCPs~iplvq~~r~~Ka~i~~ 435 (529)
T COG4656 359 LEPIKEQSCIRCSLCADACPVNLLPQQLYWFAKG--EQHDEEEEHNLLDCI-ECGACAYVCPSNIPLVQYFRQEKAEILA 435 (529)
T ss_pred ccchhhhccccHHHHHHhCccccCHHHhhHHhhh--hhhhHHHHHHhhhhh-hhCcchhcCCCCCCHHHHHHHHHHHHHH
Confidence 333344599999999999995 34556666554 334455667788999 6999999999999977766666666544
Q ss_pred H
Q 011433 472 R 472 (486)
Q Consensus 472 h 472 (486)
-
T Consensus 436 ~ 436 (529)
T COG4656 436 Q 436 (529)
T ss_pred h
Confidence 3
No 11
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=100.00 E-value=1.1e-44 Score=383.98 Aligned_cols=307 Identities=15% Similarity=0.134 Sum_probs=239.9
Q ss_pred HHHHhcChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCCcEEEEEccCCCCcchhhhHHhhcChHHHHHHHHHH
Q 011433 89 KDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIA 168 (486)
Q Consensus 89 ~~~~~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~ 168 (486)
+++..+++++|++.|++|||+|+| ++|||+.... .+.++++|||||+||||++..|+++|+++++++++|+.++
T Consensus 109 ~~~~~~~~e~l~~~i~~aGivg~g-~~fP~~~~~~-----~~~~~~~liINgaEceP~l~~d~~lm~~~~~~i~~Gi~~l 182 (448)
T PRK05352 109 KDLASLSREQVKENLLESGLWTAL-RTRPFSKVPA-----PDSTPRAIFVTAMDTNPLAADPEVIIAEQEEAFQAGLTVL 182 (448)
T ss_pred cChhhCCHHHHHHHHHHcCccccc-cCCCccccCC-----CCCCCCEEEEECccCCcccCChHHHHHHhHHHHHHHHHHH
Confidence 344568999999999999999999 8999954332 1357899999999999999999999999999999999999
Q ss_pred HHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEEEEccCcCcCccHHHHHHHHcCCCCCCCC
Q 011433 169 GVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRL 248 (486)
Q Consensus 169 ~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr~ 248 (486)
++++|++ ++|+|+++ ++++ .. + .-+|+|+..++.||+|.|+.||+.++
T Consensus 183 ~kl~~~~-~~I~ie~~--~ai~-------~~---~-----------~~~i~v~~~~~~YP~G~e~~lI~~l~-------- 230 (448)
T PRK05352 183 SRLTDGK-VHVCKAPG--ASLP-------GE---N-----------LKNVEVHTFSGPHPAGLVGTHIHFLD-------- 230 (448)
T ss_pred HHHhCCc-EEEEECcc--cccc-------cc---c-----------CCCEEEEECCCCCCCCchHhheEEec--------
Confidence 9999997 99999986 2221 00 0 12599999999999999999999983
Q ss_pred CCCCCcccCCcCCCcee--ecHHHHHHHHHHHHcCchhhhhcCCCCCCCcEEEEEEcc-CCCceeEEEeCCCCHHHHHHH
Q 011433 249 KPPFPANAGLYGCPTTV--TNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGH-VNKPCTVEEEMSIPLKELIDR 325 (486)
Q Consensus 249 kpp~pa~~G~~g~PTvV--~NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk~vtVsG~-V~~Pg~~evpiGtpl~eli~~ 325 (486)
|.+.|. +| +||+|+++|++++.+|.|.. +|+|||+|+ |++|+||+||+|||++|||+
T Consensus 231 ----P~~~G~-----vV~~~nv~tv~aI~~a~~~G~p~~----------eR~VTVtG~~v~~p~nv~v~iGTpi~~ll~- 290 (448)
T PRK05352 231 ----PVSAGK-----TVWTIGYQDVIAIGKLFLTGELYT----------ERVVALAGPAVKKPRLVRTRLGASLSELTA- 290 (448)
T ss_pred ----CCCCCc-----EEEEeCHHHHHHHHHHHHcCCCce----------eEEEEEECcccCCCceEEEeCCCCHHHHHh-
Confidence 568887 66 99999999999999999986 999999995 99999999999999999998
Q ss_pred ccCCCcCCCCcccEEecCCCCCCccccccccc-c-----ccCh----------------hHHhhhccccccceEEeecCC
Q 011433 326 HCGGVRGGWDNLLAVIPGGSSVPLLPKHICDD-V-----LMDY----------------DALKAVQSGLGTAAVIVMDKS 383 (486)
Q Consensus 326 ~~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d-~-----~~d~----------------d~l~~~g~~~Gtg~IIVld~~ 383 (486)
.+ ... +..+||.|| ||||....+. . ..++ ....+.++++++.++++..+.
T Consensus 291 ~~--~~~---~~~rvI~GG---PMmG~~~~~~~~~l~~~~~~~~vip~~~~~~~~g~~~~~~~~~~v~k~t~~~l~~~~~ 362 (448)
T PRK05352 291 GE--LKA---GDNRVISGS---VLTGRTAKGPHAYLGRYHNQVSVLPEGRERELFGWLRPGFNKFSVTRTYLSHLFKKKL 362 (448)
T ss_pred cc--ccC---CCCEEEECC---CCcCcCcCCCccccccccCcceEeccCccccccccccccccccccccceeeeeccccc
Confidence 34 232 235899999 9999876210 0 0111 111235667788888886332
Q ss_pred ccHHHHHHHHhhhhccCcCCCCccchhhHHH---HHHHHHHHHcCCCCHHhHHHH--HHHHHHhc-cCCCCCCCccchHH
Q 011433 384 TDVVDAIARLSYFYKHESCGQCTPCREGTGW---LWMIMERLKVGNAKLEEIDML--QEVTKQIE-GHTICALGDAAAWP 457 (486)
Q Consensus 384 ~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~---l~~iL~ri~~G~~~~~Dld~L--~ela~~i~-~~s~C~lg~~a~~p 457 (486)
-. .+ ......+..|++|+.|.+.||. ..++++.+..++ +|.+ ..+.+|+. +|++|.|.|++.+|
T Consensus 363 ~~-~~----~~~~~~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~~d-----~~~~e~~~~~~C~EedCG~CsyVCPskip 432 (448)
T PRK05352 363 FN-FT----TNTNGSERAMVPIGNYERVMPLDILPTQLLRALIVGD-----TDEAQALGALELDEEDLALCTFVCPGKYE 432 (448)
T ss_pred cC-cc----ccCCCCCcceeecCcHhhcCCCCCCHHHHHHHHHcCC-----HHHHHHcCchhcCccccCCCccCCCCCch
Confidence 10 00 0112356799999999999994 777888776654 3333 33556772 39999999999999
Q ss_pred HHHHHHhhHHHHHH
Q 011433 458 VQGLIRHFRPELER 471 (486)
Q Consensus 458 v~s~I~~FrdEfe~ 471 (486)
+.++||+-++.++.
T Consensus 433 L~q~iR~~k~~~~~ 446 (448)
T PRK05352 433 YGPILRDGLDRIEK 446 (448)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887764
No 12
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=100.00 E-value=6.9e-43 Score=369.66 Aligned_cols=307 Identities=14% Similarity=0.110 Sum_probs=237.8
Q ss_pred HHHhcChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCCcEEEEEccCCCCcchhhhHHhhcChHHHHHHHHHHH
Q 011433 90 DLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAG 169 (486)
Q Consensus 90 ~~~~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~ 169 (486)
++..+++++|++.+++|||+|.+| .||++++... +.++++|+|||.|||||++.|.++|+++++++++|+.+++
T Consensus 107 d~~~~~~e~l~~~i~~aGivg~~~-~~P~~~~~~~-----~~~~~~iiINg~EceP~~t~d~~lm~e~~~~~~~Gi~il~ 180 (447)
T TIGR01936 107 DLQTLSAEQIKENLLESGLWTAIK-QRPFDIVATP-----DSSPRDIFITAADTRPLAPDPEVVLAEFSSAFVVGLDALA 180 (447)
T ss_pred ChhhCCHHHHHHHHHHcCcccccc-CCCCCcCCCC-----CCCCCEEEEECCcCCcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 444689999999999999999999 7999995432 4579999999999999999999999999999999999999
Q ss_pred HhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEEEEccCcCcCccHHHHHHHHcCCCCCCCCC
Q 011433 170 VGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLK 249 (486)
Q Consensus 170 ~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr~k 249 (486)
++++ ++++|+|+++. +.++++ .-+|+|+..++.||+|.|+.||+.|+
T Consensus 181 kl~~-~kv~i~ie~n~----~~~~~~-------------------~~~i~v~~~~~~YP~G~ek~lI~~l~--------- 227 (447)
T TIGR01936 181 KLFT-GKVHVCKKDRL----SLPTQL-------------------LSNAEIHTFSGPHPAGLPGTHIHFIA--------- 227 (447)
T ss_pred HHhC-CcEEEEEcCCh----hhhhhc-------------------cCCcEEEECCCCCCCCChhhhheEec---------
Confidence 9999 99999999883 112211 01588999999999999999999995
Q ss_pred CCCCcccCCcCCCceee--cHHHHHHHHHHHHcCchhhhhcCCCCCCCcEEEEEEcc-CCCceeEEEeCCCCHHHHHHHc
Q 011433 250 PPFPANAGLYGCPTTVT--NVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGH-VNKPCTVEEEMSIPLKELIDRH 326 (486)
Q Consensus 250 pp~pa~~G~~g~PTvV~--NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk~vtVsG~-V~~Pg~~evpiGtpl~eli~~~ 326 (486)
|++.|. +|. ||+|++++++++.+|.|++ +|+|||||+ |++|+||+||+|||++|||+ .
T Consensus 228 ---P~~~G~-----iV~~inv~tv~aI~~a~~~G~pl~----------eRvVTVtG~~v~~P~nv~v~iGTpi~~ll~-~ 288 (447)
T TIGR01936 228 ---PIGNGK-----VVWTLNYQDVIAIGHLFLTGELLT----------ERVIALAGPAVKKPRYVRTTKGANLSQLFP-G 288 (447)
T ss_pred ---CCCCCc-----EEEeCCHHHHHHHHHHHHcCCCcc----------eEEEEEECcccCCCCcEEEECCCcHHHHHh-h
Confidence 679998 999 9999999999999999997 999999997 99999999999999999998 3
Q ss_pred cCCCcCCCCcccEEecCCCCCCccccccccc------cccChhHHhh----------------hccccccceEEeecCCc
Q 011433 327 CGGVRGGWDNLLAVIPGGSSVPLLPKHICDD------VLMDYDALKA----------------VQSGLGTAAVIVMDKST 384 (486)
Q Consensus 327 ~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d------~~~d~d~l~~----------------~g~~~Gtg~IIVld~~~ 384 (486)
+ +... +..+||.|| ||||....++ -.+|...++. .-+++++.++++..++.
T Consensus 289 ~-~~~~---~~~riI~GG---pMmG~~~~~~~~~lg~~~~~vpVik~~~~~~~~g~~~p~~~~~s~~k~~~s~l~~~~~~ 361 (447)
T TIGR01936 289 E-LTSE---GENRLISGS---VLTGRKAKKEEAYLGRRDLQISVLPEGDVRELFGWLRPGLNKYSVTRTYLSGLFKKRKE 361 (447)
T ss_pred c-CcCC---CCCeEEECC---CCcCcCcCCcccccCcccccceeeccCCcccccccccccccccccccceeeeecccccc
Confidence 4 3331 346899999 9999877321 0122211110 11334444555532111
Q ss_pred cHHHHHHHHhhhhccCcCCCCccchhhHHH---HHHHHHHHHcCCCCHHhHHHHHHHH--HHhc-cCCCCCCCccchHHH
Q 011433 385 DVVDAIARLSYFYKHESCGQCTPCREGTGW---LWMIMERLKVGNAKLEEIDMLQEVT--KQIE-GHTICALGDAAAWPV 458 (486)
Q Consensus 385 ciV~~~~~~~~F~~~ESCGqC~PCReG~~~---l~~iL~ri~~G~~~~~Dld~L~ela--~~i~-~~s~C~lg~~a~~pv 458 (486)
--. .......+..|++|+.|-+.||. ..++++.+.. +|+|.++++. +++. +|++|+|.|++.+|+
T Consensus 362 ~~~----~~~~~~~~~aCI~CG~C~~vCPm~L~P~~L~~a~~~-----~d~d~a~~lg~~ecieedCG~CsyVCPSki~l 432 (447)
T TIGR01936 362 YNM----DTNTNGGERAMIPIGIYERVMPLDIPPTLLLKALIA-----GDFDKAQRLGALEVDEEDFALCTFVDPSKYEY 432 (447)
T ss_pred cCc----cccCCCCccceeECChHhhcCCCCCCHHHHHHHHHc-----CCHHHHHHCCCcccCccccccCceECCCCchH
Confidence 000 00112356789999999999994 5566665544 4677777754 6774 599999999999998
Q ss_pred HHHHHhhHHHHH
Q 011433 459 QGLIRHFRPELE 470 (486)
Q Consensus 459 ~s~I~~FrdEfe 470 (486)
.++||.--+.++
T Consensus 433 ~q~iR~~l~~~~ 444 (447)
T TIGR01936 433 GSIVRESLDRIE 444 (447)
T ss_pred HHHHHHHHHHHH
Confidence 888887766654
No 13
>PF01512 Complex1_51K: Respiratory-chain NADH dehydrogenase 51 Kd subunit; InterPro: IPR011538 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Thie entry represents the 51 kDa subunit from NADH:ubiquinone oxidoreductase []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 51 kDa (in mammals), which is the second largest subunit of complex I and is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind to NAD, FMN, and a 2Fe-2S cluster. The 51 kDa subunit and the bacterial hydrogenase alpha subunit contain three regions of sequence similarities. The first one most probably corresponds to the NAD-binding site, the second to the FMN-binding site, and the third one, which contains three cysteines, to the iron-sulphur binding region.; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0051539 4 iron, 4 sulfur cluster binding; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=100.00 E-value=4.4e-43 Score=322.76 Aligned_cols=151 Identities=40% Similarity=0.582 Sum_probs=120.4
Q ss_pred HHHccccCCCCCCCccccccccCCCCCCCCCcEEEEEccCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEc
Q 011433 103 VKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIR 182 (486)
Q Consensus 103 i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~ 182 (486)
|++|||||+||||||||.||+... + +++||||||+||||++++|++||+++||+|++|+.|+++++||++++|+|+
T Consensus 1 i~~aGlvG~GGagfPt~~K~~~~~---~-~~~~lIvNa~E~EP~~~~D~~Lm~~~~~~il~G~~i~~~a~ga~~~iI~i~ 76 (151)
T PF01512_consen 1 IREAGLVGRGGAGFPTHVKLRPAK---D-KIDTLIVNAAECEPYLTKDRRLMREHPHEILEGIKIAAKALGAKKIIIAIE 76 (151)
T ss_dssp HHTTT-B-TTTT--BHHHHHTTS----S-SSEEEEEEE---STT--SHHHHHHH-HHHHHHHHHHHHHHTTESEEEEEE-
T ss_pred CchhcccCCCCCcchHhHHhcCcc---c-CCcEEEEeeecCCchhHHHHHHHHHhHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence 689999999999999999999753 2 579999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEEEEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCC
Q 011433 183 GEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCP 262 (486)
Q Consensus 183 ~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~P 262 (486)
++++++++.|++|+++....|+ ++|+|+.++++||+|+|++||++++|++.+++ ..|.++|+
T Consensus 77 ~~~~~~~~~l~~al~~~~~~~~-----------~~i~v~~~~~~Yp~G~e~~Li~~l~G~~~p~~---~~P~~~G~---- 138 (151)
T PF01512_consen 77 ENKPEAIEALREALAEARNAGL-----------FDIEVVAVPDRYPQGEEKALIRALTGREVPRG---RLPADVGV---- 138 (151)
T ss_dssp TT-HHHHHHHHHHHHHHHHTTS-----------BEEEEEE--S-GGGGSHHHHHHHHTTS--------SSSTTSBG----
T ss_pred cCcHHHHHHHHHHHHHHHhcCC-----------CeEEEEECcCcccCChHHHHHHHHhCCCCCCC---cCCCCCCe----
Confidence 9999999999999999877654 57999999999999999999999999977655 36699999
Q ss_pred ceeecHHHHHHHHH
Q 011433 263 TTVTNVETVAVSPT 276 (486)
Q Consensus 263 TvV~NVET~a~v~~ 276 (486)
+|+||||+++|++
T Consensus 139 -~v~NveT~~~v~~ 151 (151)
T PF01512_consen 139 -LVNNVETLAAVYR 151 (151)
T ss_dssp -EEEEHHHHHHH--
T ss_pred -EEECHHHHHHhcC
Confidence 9999999999974
No 14
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=99.52 E-value=2.2e-15 Score=112.34 Aligned_cols=46 Identities=43% Similarity=0.821 Sum_probs=37.4
Q ss_pred HHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhH
Q 011433 387 VDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEI 432 (486)
Q Consensus 387 V~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dl 432 (486)
|++++++++|+++||||||+|||+|++|+.++|++|.+|+++++||
T Consensus 1 V~~~~~~~~f~~~ESCGkC~PCR~Gt~~l~~~l~~i~~G~~~~~Dl 46 (46)
T PF10589_consen 1 VAVARNYMEFFAHESCGKCTPCREGTRQLAEILEKIVRGEGTPEDL 46 (46)
T ss_dssp HHHHHHHHHHHHHH--S--HHHHCCCCHHHHHHHHHTBT---HHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCcHhHHHHHHHHHHHHHcCCCCcccC
Confidence 6889999999999999999999999999999999999999999886
No 15
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=98.37 E-value=7.7e-07 Score=69.44 Aligned_cols=50 Identities=36% Similarity=0.513 Sum_probs=37.0
Q ss_pred EEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCC-------cccEEecCCCCCCccc
Q 011433 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWD-------NLLAVIPGGSSVPLLP 351 (486)
Q Consensus 298 ~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~-------~~~~vi~GG~s~p~~~ 351 (486)
+|+|+|+|++||+|+++.|+++.|+|+ .|||+...-. +.+.|++|| ++++
T Consensus 1 ~V~V~G~V~~PG~~~~~~g~tl~~~i~-~AGG~~~~a~~~~i~v~R~~~vi~gG---~~~~ 57 (59)
T PF10531_consen 1 TVTVSGEVNRPGTYELPPGTTLSDAIA-QAGGLTPRADLRRIEVIRKNPVIDGG---PMMG 57 (59)
T ss_dssp EEEEECSBSS-EEEEEETT-BHHHHHH-CTTSBBTTBETTSEEEEESSEEE-SS---SSS-
T ss_pred CEEEEEEeCCCEEEEECCCCcHHHHHH-HhCCCCCCcccccccccccceecCCC---ccCC
Confidence 589999999999999999999999998 6999876411 123477798 6654
No 16
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=97.44 E-value=0.0007 Score=70.10 Aligned_cols=195 Identities=17% Similarity=0.214 Sum_probs=139.3
Q ss_pred cHHHHhcChHHHHHHHHHccccCCCCCCCccccccccCCC--CCCCCCcEEEEEccCCCCcchhhhHHhhcChHHHHHHH
Q 011433 88 TKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPK--VSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGC 165 (486)
Q Consensus 88 l~~~~~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~--~~~~~~~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~ 165 (486)
++.+-.++.+++-+.+.+|||- |..|-+...+ +.+..++-+.||+.+..|++-.-..++.++.+.+.-|+
T Consensus 107 ~~~L~~l~~eeV~~~l~~sGLw--------talrtRPFsk~p~p~s~p~~iFvnamDt~Plaadp~v~i~~~s~~F~~Gl 178 (447)
T COG1726 107 LEQLAQLSLEEVRKNLIESGLW--------TALRTRPFSKVPAPDSTPRAIFVNAMDTNPLAADPEVVIAEFSEAFVVGL 178 (447)
T ss_pred HHHHhhccHHHHHHHHHhhhHH--------HHHhcCCCCCCCCCCCChhhheeecccCCCCCCChHhHHHHHHHHHHHHH
Confidence 4555568999999999999982 3333333211 12456788999999999999988999999999999999
Q ss_pred HHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEEEEccCcCcCccHHHHHHHHcCCCCC
Q 011433 166 LIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGK 245 (486)
Q Consensus 166 ~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~ 245 (486)
..+++..+-+ ++..++.-... =+.. .-.+++|.-.|-+|+|--..=|..|.=
T Consensus 179 ~vlsrL~~~k--~~vcka~~~~~---~~~~-------------------~~~~~~h~f~GPhPaGl~gtHIHfi~p---- 230 (447)
T COG1726 179 TVLSRLFGLK--HHVCKAAGTLP---PQEL-------------------LSNAHLHEFSGPHPAGLPGTHIHFIAP---- 230 (447)
T ss_pred HHHHHHhCce--EEEEcccCCCC---Chhh-------------------ccceeeeeccCCCCCCCCcceeEEecc----
Confidence 9999999987 33444322100 0010 124777888889999865544444321
Q ss_pred CCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCCCCcEEEEEEcc-CCCceeEEEeCCCCHHHHHH
Q 011433 246 PRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFCVSGH-VNKPCTVEEEMSIPLKELID 324 (486)
Q Consensus 246 pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk~vtVsG~-V~~Pg~~evpiGtpl~eli~ 324 (486)
.-+..=+| -.|-+.+.+|.+..-+|.-| ++|++++.|. |++|..+.-.+|.++.+|+.
T Consensus 231 ------v~~~k~Vw-----~inyQDViaIG~LF~tG~l~----------~erVvaLAGp~v~~prlvrT~~GAsls~L~~ 289 (447)
T COG1726 231 ------VGATKVVW-----TINYQDVIAIGKLFLTGELL----------TERVVALAGPQVNKPRLVRTVLGASLSQLTA 289 (447)
T ss_pred ------ccCceEEE-----Eeehhhhhhhhhhhhcceee----------hhhheecccCCCCCceEEEEeccCCHHHhcc
Confidence 11222232 46888899999999999877 4899999996 99999999999999999996
Q ss_pred HccCCCcCCCCcccEEecCCC
Q 011433 325 RHCGGVRGGWDNLLAVIPGGS 345 (486)
Q Consensus 325 ~~~GG~~~g~~~~~~vi~GG~ 345 (486)
|-...+ + ..+|.|-+
T Consensus 290 ---~~l~~g--~-nrlISGsv 304 (447)
T COG1726 290 ---GELKSG--E-NRLISGSV 304 (447)
T ss_pred ---ccccCC--C-ceEEecCc
Confidence 334443 2 37888873
No 17
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=96.63 E-value=0.0099 Score=59.71 Aligned_cols=172 Identities=14% Similarity=0.154 Sum_probs=119.1
Q ss_pred CcceEEeccccccCCChhHHHhcCCchhcHHHHhcChHHHHHHHHHccccCCCCCCCcccccccc---CCCCCCCCCcEE
Q 011433 60 DEDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSF---MPKVSDGRPSYL 136 (486)
Q Consensus 60 ~~~~i~~~~~g~~~~~~~~~~~~ggy~~l~~~~~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~---~~~~~~~~~~~l 136 (486)
...|.+.++--..|. +++..-..|. ..++..+++|++.+.+.+||+=.. ++-+. ++. .+..++.+
T Consensus 82 G~rR~l~svvI~~d~--~~~~~f~~~~-~~~l~~l~~e~v~~~Ll~sGlW~~--------irqRPy~~va~-p~~~P~aI 149 (257)
T PF05896_consen 82 GERRKLLSVVIEADG--DEEQEFEDFG-AKDLASLSREEVKEQLLESGLWTA--------IRQRPYSKVAN-PDSTPKAI 149 (257)
T ss_pred CCCceEEEEEEEecC--CcceeeccCC-hhhhhhCCHHHHHHHHHHcCCchh--------hccCCCCCCCC-CCCCCceE
Confidence 445555555444442 2333333333 235567999999999999998321 22211 122 34678999
Q ss_pred EEEccCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCce
Q 011433 137 VVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDF 216 (486)
Q Consensus 137 VvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~ 216 (486)
.|||.+..|+.-.=.++++.+...+-.|+.++++... .++|+.+..+..... .+ .-
T Consensus 150 FVsa~dt~PLA~dp~~il~~~~~~F~~Gl~~LskLt~-gkv~v~~~~~~~~~~-------~~----------------~~ 205 (257)
T PF05896_consen 150 FVSAMDTNPLAPDPEFILKGNEEAFQAGLTALSKLTD-GKVHVCVAPGSSSPL-------AD----------------LK 205 (257)
T ss_pred EEEcccCCCCCCCHHHHHhhhHHHHHHHHHHHHHHcC-CCEEEEECCCCCCCc-------cC----------------cC
Confidence 9999999999988899999999999999999999985 689999987643100 00 12
Q ss_pred eEEEEEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCc
Q 011433 217 DVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGP 282 (486)
Q Consensus 217 ~i~V~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~ 282 (486)
+++++.-.|-||+|.--..|+.|.- .....=+| -.|.+.+.+|.+.+..|.
T Consensus 206 ~v~~~~f~GpHPAG~vGthIh~l~P----------v~~~~~VW-----ti~~qdVi~IG~lf~tG~ 256 (257)
T PF05896_consen 206 GVEVHTFSGPHPAGNVGTHIHHLDP----------VNKGETVW-----TIGYQDVIAIGRLFLTGK 256 (257)
T ss_pred CeEEEEeCCCCCCCCccccceeecC----------CCCCceEE-----EecHHHHHHHHHHHhccc
Confidence 5889999999999988877766643 22333344 468889999988887764
No 18
>PF11973 NQRA_SLBB: NQRA C-terminal domain; InterPro: IPR022615 This domain is found in bacterial Na(+)-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na(+)-translocating NADH: ubiquinone oxidoreductase (Na(+)-NQR) generates an electrochemical Na(+) potential driven by aerobic respiration []. The function of this domain has not been characterised.; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=95.14 E-value=0.039 Score=42.21 Aligned_cols=46 Identities=20% Similarity=0.468 Sum_probs=37.1
Q ss_pred EEEEEcc-CCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCcccc
Q 011433 298 LFCVSGH-VNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPK 352 (486)
Q Consensus 298 ~vtVsG~-V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~ 352 (486)
+++|+|. |++|+.+++.+|+++.+|+. |-...+ ..+||.|. ++.+.
T Consensus 1 vIAlaG~~v~~p~y~rt~~Ga~i~~l~~---g~~~~~---~~RiIsG~---vLtG~ 47 (51)
T PF11973_consen 1 VIALAGPGVKNPRYVRTRIGASISDLLA---GNLKED---NVRIISGS---VLTGR 47 (51)
T ss_pred CEEecCccCCcccEEEEeCCcCHHHHhC---cccCCC---CcEEEEcC---CCCCe
Confidence 4789996 99999999999999999997 234432 45899998 66665
No 19
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=93.68 E-value=0.1 Score=61.69 Aligned_cols=84 Identities=7% Similarity=-0.044 Sum_probs=69.7
Q ss_pred ChhHHhhhccccccceEE---eecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHH
Q 011433 361 DYDALKAVQSGLGTAAVI---VMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQE 437 (486)
Q Consensus 361 d~d~l~~~g~~~Gtg~II---Vld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~e 437 (486)
+||.-..+-.+.|...+. +++...|+|+++..+++....+ |+.++.+.|+++..|+++..|++.|++
T Consensus 343 ~f~g~l~is~~~g~~~~~~~~~~~~gi~pv~~a~~~lk~~~~~----------~~~~l~~~l~~~~~~~~~~~~~~~~~~ 412 (1019)
T PRK09853 343 EFDGKLPISYSGGADQFNIRDIFDTGIRPITMATTLLKPGGYL----------RLTQCARELEGSDAWGFDGVDVEKLNR 412 (1019)
T ss_pred hhCCCCceeEEeccceeehhhccCCCCCHHHHHHHHHHHHhhc----------cHHHHHHHHHHHhcCCCCcccHHHHHH
Confidence 444322233456778888 9999999999999999865544 999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCccchHHHHHHHHhhHHHHHH
Q 011433 438 VTKQIEGHTICALGDAAAWPVQGLIRHFRPELER 471 (486)
Q Consensus 438 la~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe~ 471 (486)
|++.+... +||+++|+.
T Consensus 413 la~~~~~~-----------------~~~~~~~~~ 429 (1019)
T PRK09853 413 LAADALTM-----------------EYTQKHWKP 429 (1019)
T ss_pred HHHHHhhC-----------------hhhhhhhhc
Confidence 99988644 899999887
No 20
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.77 E-value=0.14 Score=60.59 Aligned_cols=66 Identities=9% Similarity=-0.088 Sum_probs=57.9
Q ss_pred cccccceE---EeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhccC
Q 011433 370 SGLGTAAV---IVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGH 445 (486)
Q Consensus 370 ~~~Gtg~I---IVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~ 445 (486)
.+.|...+ .+++...|+|+++..+++... |.|+.++.+.|+++..|+++..|++.|++|++.+...
T Consensus 350 ~~~g~~~~n~~~~~~~gi~pv~~a~~~lk~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~la~~~~~~ 418 (1012)
T TIGR03315 350 YSGGADIFNIKEIFDTGIWPITMATTLLKPGG----------YLRLNQCANELETSEYWGMGHVDLDKLAQLAAKALTD 418 (1012)
T ss_pred EEeccccccHHhhcCCCCCHHHHHHHHHHHHh----------hccHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhcC
Confidence 34566677 899999999999999997433 9999999999999999999999999999999888643
No 21
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=91.80 E-value=0.25 Score=46.15 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=33.3
Q ss_pred cEEEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcC
Q 011433 296 TKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRG 332 (486)
Q Consensus 296 tk~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~ 332 (486)
.+.|+|.|.|++||.|...-++++.|+|. .|||+..
T Consensus 78 ~~~V~V~GeV~~PG~y~~~~~~tl~~ai~-~AGG~~~ 113 (165)
T TIGR03027 78 SEQIRVVGAAANPQALPYREGMTLLDVMI-AVGGLTD 113 (165)
T ss_pred CcEEEEEEEeCCCceeeeCCCCcHHHHHH-HcCCCCc
Confidence 46899999999999999999999999998 6999985
No 22
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=87.24 E-value=0.74 Score=46.20 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=47.5
Q ss_pred hhhccCcCCCCccchhhHHHHHH---------H--HHHHHcCC-CCHHhHHHHHHH------HHHhccCCCCCCCccchH
Q 011433 395 YFYKHESCGQCTPCREGTGWLWM---------I--MERLKVGN-AKLEEIDMLQEV------TKQIEGHTICALGDAAAW 456 (486)
Q Consensus 395 ~F~~~ESCGqC~PCReG~~~l~~---------i--L~ri~~G~-~~~~Dld~L~el------a~~i~~~s~C~lg~~a~~ 456 (486)
.+.....|++|+-|+..||.... + +.++.... +..+.-+.++.+ -.+. .|..|...|+..+
T Consensus 147 ~~~~~~~CI~CG~C~saCP~~~~~~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~-~Cg~C~~vCPkgI 225 (249)
T PRK08640 147 WAYELSKCMTCGCCLEACPNVNEKSDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCG-NAQNCVRVCPKGI 225 (249)
T ss_pred HHhhhhhccCcCcccccCCCCccCCCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCc-CcCcccccCCCCC
Confidence 44556899999999999994321 1 11221111 211122334444 2233 4668999999999
Q ss_pred HHHHHHHhhHHHHHHH
Q 011433 457 PVQGLIRHFRPELERR 472 (486)
Q Consensus 457 pv~s~I~~FrdEfe~h 472 (486)
|+...|+..|.++..+
T Consensus 226 ~~~~~I~~lr~~~~~~ 241 (249)
T PRK08640 226 PLTTSIAAMNRETTKQ 241 (249)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999888776544
No 23
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.41 E-value=0.72 Score=45.69 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=33.0
Q ss_pred cEEEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcC
Q 011433 296 TKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRG 332 (486)
Q Consensus 296 tk~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~ 332 (486)
..-|+|+|.|++||.|.+.-+++|-|+|. .+||+..
T Consensus 78 ~~~V~V~GeV~~PG~~~l~~~~tl~~ai~-~AGG~~~ 113 (239)
T TIGR03028 78 GQQVSVLGQVNRPGRYPLETAGRVSDVLA-LAGGVTP 113 (239)
T ss_pred ceEEEEEEEecCCceEEcCCCCcHHHHHH-HcCCCCc
Confidence 46789999999999999999999999998 6999875
No 24
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.37 E-value=1 Score=44.66 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=31.5
Q ss_pred EEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCC
Q 011433 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGG 333 (486)
Q Consensus 298 ~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g 333 (486)
.|.|.|.|++||.|+.+-++++.++|. .+||+...
T Consensus 164 ~v~v~G~V~~pg~~~~~~~~tl~~al~-~aGG~~~~ 198 (239)
T TIGR03028 164 VFYIYGEVQRPGAYRLERNMTVMQALA-QGGGLTPR 198 (239)
T ss_pred cEEEEeEccCCeEEEeCCCCCHHHHHH-hcCCCCcc
Confidence 368999999999999999999999998 69998753
No 25
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=86.28 E-value=0.44 Score=51.54 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=53.7
Q ss_pred eEEeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHH----------------HHHHHHHcCCCCHHhHHHHHHHH
Q 011433 376 AVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLW----------------MIMERLKVGNAKLEEIDMLQEVT 439 (486)
Q Consensus 376 ~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~----------------~iL~ri~~G~~~~~Dld~L~ela 439 (486)
-+|++|+...=+ .+. +|.....|.+|+-|...||... .++..+..|.. ...++.
T Consensus 273 hvilldngr~~~--~~~--~~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~------~~~~~~ 342 (432)
T TIGR00273 273 HLILLDNGRSNI--LAT--EFREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYT------DYKHLP 342 (432)
T ss_pred EEEEeCCCcchh--hhh--hhhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHHHhcccc------cccccC
Confidence 456667654311 111 3667889999999999999532 22333333311 111222
Q ss_pred HHhccCCCCCCCccchHHHHHHHHhhHHHHH
Q 011433 440 KQIEGHTICALGDAAAWPVQGLIRHFRPELE 470 (486)
Q Consensus 440 ~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe 470 (486)
..-..|+.|.-.|+..+++..+|...|.+..
T Consensus 343 ~~C~~Cg~C~~vCP~gI~~~~li~~~R~~~~ 373 (432)
T TIGR00273 343 YLSSLCGACREVCPVKIPLPELIREHRSDKV 373 (432)
T ss_pred ccchhhhhhhccCCCCCcHHHHHHHHHHHHH
Confidence 2223688899999999999999999888765
No 26
>COG1596 Wza Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]
Probab=82.87 E-value=1.2 Score=44.35 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=32.3
Q ss_pred cEEEEEEccCCCceeEEEeC-CCCHHHHHHHccCCCcC
Q 011433 296 TKLFCVSGHVNKPCTVEEEM-SIPLKELIDRHCGGVRG 332 (486)
Q Consensus 296 tk~vtVsG~V~~Pg~~evpi-Gtpl~eli~~~~GG~~~ 332 (486)
.+-|.|+|+|++||.|.... |.++.+.|. .+||+..
T Consensus 124 p~~v~V~GeV~~PG~y~~~~~~~tv~~ai~-~AGG~~~ 160 (239)
T COG1596 124 PQKVFVSGEVKTPGQYPLTPRGLTVLDAIA-LAGGLTP 160 (239)
T ss_pred CcEEEEeeecCCCceEEecCCccHHHHHHH-HcCCCCc
Confidence 45589999999999998888 999999998 6999976
No 27
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=80.78 E-value=0.53 Score=43.03 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=43.5
Q ss_pred CcCCCCccchhhHHHH-------HHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhHHHHH
Q 011433 400 ESCGQCTPCREGTGWL-------WMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELE 470 (486)
Q Consensus 400 ESCGqC~PCReG~~~l-------~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe 470 (486)
..|.||+.|...||.. ..++.+...|.... +..-..+-.+. .|+.|...|+..+++...++..|....
T Consensus 2 ~~Ci~CG~C~~~CP~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~C~-~Cg~C~~~CP~~i~~~~~i~~~R~~~~ 76 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRRTSYRTRLIIRKALLGLKDE--VISDDDLWMCT-TCYTCQERCPRDVKITDIIKALRNLAA 76 (144)
T ss_pred ccccCCCCCcCcCCCccccCCCHHHHHHHHHccchhh--hccCCCCCcCc-CcCchhhhcCCCCCHHHHHHHHHHHHH
Confidence 5799999999999942 24555555552110 00001121233 578888888888898899988886654
No 28
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=79.89 E-value=1.8 Score=43.09 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=49.9
Q ss_pred hhccCcCCCCccchhhHHH-------------HHHHHHHHHcCCCC--HHhHHHHHH---HHHHhccCCCCCCCccchHH
Q 011433 396 FYKHESCGQCTPCREGTGW-------------LWMIMERLKVGNAK--LEEIDMLQE---VTKQIEGHTICALGDAAAWP 457 (486)
Q Consensus 396 F~~~ESCGqC~PCReG~~~-------------l~~iL~ri~~G~~~--~~Dld~L~e---la~~i~~~s~C~lg~~a~~p 457 (486)
+..-..|.+|+-|...||. +...++.+.+++.. .+.++.+.+ +-.+. .|..|...|+...+
T Consensus 140 ~~~~~~CI~CG~C~s~CP~~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~-~C~~C~~vCPkgI~ 218 (235)
T PRK12575 140 LDGLYECILCACCSTACPSYWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCR-TIMNCVDVCPKGLN 218 (235)
T ss_pred HHhhhhCcccccccccccCccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCccccc-CcchhccccCCCCc
Confidence 3455789999999999994 33445555566432 222322221 22333 57888889999899
Q ss_pred HHHHHHhhHHHHHHH
Q 011433 458 VQGLIRHFRPELERR 472 (486)
Q Consensus 458 v~s~I~~FrdEfe~h 472 (486)
+..+|...|.++..+
T Consensus 219 ~~~~I~~lR~~~~~~ 233 (235)
T PRK12575 219 PARAIGQIRTMLARR 233 (235)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999888776554
No 29
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=78.14 E-value=3.3 Score=44.06 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=32.3
Q ss_pred cEEEEEEccCCCceeEEEe-CCCCHHHHHHHccCCCcCC
Q 011433 296 TKLFCVSGHVNKPCTVEEE-MSIPLKELIDRHCGGVRGG 333 (486)
Q Consensus 296 tk~vtVsG~V~~Pg~~evp-iGtpl~eli~~~~GG~~~g 333 (486)
++-|+|.|.|++||.|.+. .+++|-|+|. .+||+...
T Consensus 170 s~~V~V~GeV~~PG~~~l~~~~~tlldaIa-~AGG~~~~ 207 (379)
T PRK15078 170 SQKAYVTGEVNKSGQQAITNVPLTILDAIN-AAGGLTDD 207 (379)
T ss_pred ceEEEEEceecCCeEEEecCCCccHHHHHH-HccCCCcc
Confidence 5678999999999999986 4899999998 69999754
No 30
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=74.67 E-value=1.1 Score=49.70 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=50.6
Q ss_pred CcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhHH
Q 011433 400 ESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRP 467 (486)
Q Consensus 400 ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~Frd 467 (486)
..|-+|+-|...||.-.++.+.+.. +...|+..|+++-+.--+|..|.-.|+--+||++.+++-..
T Consensus 400 ~kc~~cG~C~~~CP~~l~i~eam~~--A~~Gd~~~l~~l~d~C~~C~rCEq~Cpk~ipi~nm~~~a~~ 465 (772)
T COG1152 400 RKCTYCGNCMRACPNELDIPEAMEY--AAKGDFSKLEDLHDVCIGCGRCEQVCPKNIPILNMIEKAAQ 465 (772)
T ss_pred HhcccccchhccCCcccchHHHHHH--hhcCChHHHHHHHHHhhhhhhhhhhCcccCchhhHHHHHHH
Confidence 4699999999999976666555433 23356777777776666899999999999999999876543
No 31
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=74.31 E-value=1.5 Score=46.40 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=45.9
Q ss_pred CcCCCCccchhhHHH-------------HHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhH
Q 011433 400 ESCGQCTPCREGTGW-------------LWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFR 466 (486)
Q Consensus 400 ESCGqC~PCReG~~~-------------l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~Fr 466 (486)
+.|.+|+.|+..||. -..+++.+..|..... +....+-.+. .|..|...|+...++-.+|..+|
T Consensus 23 ~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~--~~~~~~~~C~-~C~~C~~~CP~~v~~~~li~~~r 99 (407)
T PRK11274 23 RKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVTE--KTQLHLDRCL-TCRNCETTCPSGVQYGRLLDIGR 99 (407)
T ss_pred HhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccch--hhccccccCc-cccchhhhCCCCCCHHHHHHHHH
Confidence 589999999999993 2234666666642111 1111232344 67888888888889999998888
Q ss_pred HHHHH
Q 011433 467 PELER 471 (486)
Q Consensus 467 dEfe~ 471 (486)
..+.+
T Consensus 100 ~~~~~ 104 (407)
T PRK11274 100 KVVEE 104 (407)
T ss_pred HHHHH
Confidence 87654
No 32
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=73.85 E-value=1.4 Score=42.81 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=46.3
Q ss_pred cCcCCCCccchhhHHH-------HHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhHHHHHH
Q 011433 399 HESCGQCTPCREGTGW-------LWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELER 471 (486)
Q Consensus 399 ~ESCGqC~PCReG~~~-------l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe~ 471 (486)
-+.|-|||.|+-+||. .-++++++..|.-+ +.+..+--..-..|--|-.-|+--+.+..+++.+|+.-..
T Consensus 38 l~~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~~d---~il~~~~lW~C~tCytC~eRCPr~v~i~~vv~~lR~~a~k 114 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGLVD---LILSSESLWACVTCYTCTERCPRGVKIVEVVKALRNIAVK 114 (195)
T ss_pred HhHhhccCcccCCCCCcccCCCCHHHHHHHHHcccHH---HHhcCCcceeeeechhhhhhCCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999993 55788887776532 2222222222235777788888877788887777765433
No 33
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=72.81 E-value=4.8 Score=42.01 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=46.0
Q ss_pred hhccCcCCCCccchhhHHH------------HHHHHHHHHcCCCCHHhHHHHHHH-------HHHhccCCCCCCCccchH
Q 011433 396 FYKHESCGQCTPCREGTGW------------LWMIMERLKVGNAKLEEIDMLQEV-------TKQIEGHTICALGDAAAW 456 (486)
Q Consensus 396 F~~~ESCGqC~PCReG~~~------------l~~iL~ri~~G~~~~~Dld~L~el-------a~~i~~~s~C~lg~~a~~ 456 (486)
+..-..|.+|+-|...||. +.++++.+.++..... -+.|+.+ -.+. .|..|...|+...
T Consensus 148 ~~~~~~Ci~CG~C~s~CP~~~~~~~f~GP~~~~~a~r~~~d~rd~~~-~~~l~~~~~~~~giw~C~-~C~~C~~~CPk~I 225 (329)
T PRK12577 148 LDQTGNCILCGACYSECNAREVNPEFVGPHALAKAQRMVADSRDTAT-EQRLELYNQGTAGVWGCT-RCYYCNSVCPMEV 225 (329)
T ss_pred HHHhhhCcccCcccccCCCCCcCcCcCCHHHHHHHHHHhhCCcchhH-HHHHHHHhcCCCccccCc-ChhhhhhhCCCCC
Confidence 3345789999999999973 2234444445533211 1233332 2344 4777888888888
Q ss_pred HHHHHHHhhHHHHHH
Q 011433 457 PVQGLIRHFRPELER 471 (486)
Q Consensus 457 pv~s~I~~FrdEfe~ 471 (486)
++...|...|.++..
T Consensus 226 ~~~~~I~~lr~~~~~ 240 (329)
T PRK12577 226 APLDQITKIKQEILA 240 (329)
T ss_pred chHHHHHHHHHHHHH
Confidence 888888888776643
No 34
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=72.67 E-value=5.1 Score=42.66 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=31.5
Q ss_pred cEEEEEEccCCCceeEEEe-CCCCHHHHHHHccCCCcC
Q 011433 296 TKLFCVSGHVNKPCTVEEE-MSIPLKELIDRHCGGVRG 332 (486)
Q Consensus 296 tk~vtVsG~V~~Pg~~evp-iGtpl~eli~~~~GG~~~ 332 (486)
..-|+|.|.|++||.|+.+ -++||.|.|. .+||+..
T Consensus 254 ~~~v~V~GeV~~Pg~~~~~~~~~TL~~Al~-~AGGl~~ 290 (379)
T PRK15078 254 DLKVFVMGEVKKQSTLKMDRSGMTLTEALG-NAEGIDQ 290 (379)
T ss_pred CcEEEEeeecccceEEecCCCCCCHHHHHH-hcCCCCc
Confidence 4568999999999999996 5899999998 5899874
No 35
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=71.02 E-value=4.3 Score=40.03 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=44.5
Q ss_pred hhccCcCCCCccchhhHHHH-------------HHHHHHHHcCCCCH--HhHHHHH---HHHHHhccCCCCCCCccchHH
Q 011433 396 FYKHESCGQCTPCREGTGWL-------------WMIMERLKVGNAKL--EEIDMLQ---EVTKQIEGHTICALGDAAAWP 457 (486)
Q Consensus 396 F~~~ESCGqC~PCReG~~~l-------------~~iL~ri~~G~~~~--~Dld~L~---ela~~i~~~s~C~lg~~a~~p 457 (486)
+..-..|.+|+-|...||.. ..+++.+.++.... ..++.+. .+-.+. .|..|...|+...+
T Consensus 137 ~~~~~~Ci~Cg~C~~~CP~~~~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~-~Cg~C~~~CP~gi~ 215 (232)
T PRK05950 137 LDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCH-TIMNCVEVCPKGLN 215 (232)
T ss_pred HHhHHhccccccccccCCccccCCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhhcccccccCc-CcCCcCccccCCCC
Confidence 34557999999999999943 22223333343211 1111111 111222 57778888888888
Q ss_pred HHHHHHhhHHHHHH
Q 011433 458 VQGLIRHFRPELER 471 (486)
Q Consensus 458 v~s~I~~FrdEfe~ 471 (486)
+..+|..-|..+..
T Consensus 216 ~~~~I~~lR~~~~~ 229 (232)
T PRK05950 216 PTKAIGEIKRMLLE 229 (232)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888776543
No 36
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=68.73 E-value=3.3 Score=42.25 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=43.6
Q ss_pred hhhccCcCCCCccchhhHHHH------------HHHHHHHHcCCCC--HHhHHHHHH-HHHHhccCCCCCCCccchHHHH
Q 011433 395 YFYKHESCGQCTPCREGTGWL------------WMIMERLKVGNAK--LEEIDMLQE-VTKQIEGHTICALGDAAAWPVQ 459 (486)
Q Consensus 395 ~F~~~ESCGqC~PCReG~~~l------------~~iL~ri~~G~~~--~~Dld~L~e-la~~i~~~s~C~lg~~a~~pv~ 459 (486)
.+.....|.+|+-|...||.. .+.++.+.+++.. .+.++.+.+ +-.++ .|..|...|+..+++.
T Consensus 147 ~~~~~~~CI~CG~C~~~CP~~~~~~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~i~~C~-~Cg~C~~~CP~~I~~~ 225 (279)
T PRK12576 147 ELWKFAQCIWCGLCVSACPVVAIDPEFLGPAAHAKGYRFLADPRDTITEERMKILIDSSWRCT-YCYSCSNVCPRDIEPV 225 (279)
T ss_pred HhhcchhCcccCcccccCCCccccCCcCCHHHHHHHHHHhcCccccchHHHHHHHcCcCCccc-CcccchhhCCCCCcHH
Confidence 445568999999999999942 2333333343322 222222211 22333 5777888888888887
Q ss_pred HHHHhhHHH
Q 011433 460 GLIRHFRPE 468 (486)
Q Consensus 460 s~I~~FrdE 468 (486)
.+|..-|..
T Consensus 226 ~~I~~lR~~ 234 (279)
T PRK12576 226 TAIKKTRSF 234 (279)
T ss_pred HHHHHHHHH
Confidence 777776654
No 37
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=65.29 E-value=4.2 Score=39.75 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=39.6
Q ss_pred hhccCcCCCCccchhhHHHH------------HHHHHHHHcCCC--CHHhHHHHH---HHHHHhccCCCCCCCccchHHH
Q 011433 396 FYKHESCGQCTPCREGTGWL------------WMIMERLKVGNA--KLEEIDMLQ---EVTKQIEGHTICALGDAAAWPV 458 (486)
Q Consensus 396 F~~~ESCGqC~PCReG~~~l------------~~iL~ri~~G~~--~~~Dld~L~---ela~~i~~~s~C~lg~~a~~pv 458 (486)
+..-..|.+|+-|...||.. ..+++.+..+.. ..+.++.+. .+..++ .|+.|...|+...++
T Consensus 134 ~~~~~~Ci~CG~C~~~CP~~~~~~~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~-~Cg~C~~~CP~~I~~ 212 (220)
T TIGR00384 134 LDQLSGCILCGCCYSSCPAFWWNPEFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCT-TCMNCSEVCPKGVNP 212 (220)
T ss_pred HhhhhhccccccccccCCCCccCCCCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCc-cccccccccCCCCCH
Confidence 44568999999999999942 122233333322 222222222 122233 577788888888887
Q ss_pred HHHHHh
Q 011433 459 QGLIRH 464 (486)
Q Consensus 459 ~s~I~~ 464 (486)
..+|..
T Consensus 213 ~~~I~~ 218 (220)
T TIGR00384 213 ARAIEK 218 (220)
T ss_pred HHHHHH
Confidence 777654
No 38
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=63.75 E-value=7.8 Score=40.32 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=49.4
Q ss_pred ccCcCCCCccchhhHHHH-----------HHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhH
Q 011433 398 KHESCGQCTPCREGTGWL-----------WMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFR 466 (486)
Q Consensus 398 ~~ESCGqC~PCReG~~~l-----------~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~Fr 466 (486)
.-.+|-+|+.|...||.. ..+++.+.++... .+ +...+..+....|..|...|+..++...++..+|
T Consensus 7 ~~~~Cv~Cg~C~~~CP~~~~~~~~sPrgr~~~~r~~~~~~~~-~~-~~~~~~~~~C~~C~~C~~~CP~~i~~~~~~~~~r 84 (388)
T COG0247 7 SLDKCVHCGFCTNVCPSYRATEALSPRGRIVLVREVLRGKAP-GD-EEVYEALDTCLACGACATACPSGIDIGDLIREAR 84 (388)
T ss_pred HHHhcCCCCcccCcCCCccccCCCCCchHHHHHHHHHhCCCc-ch-hhhHHHHHhCcCccchHhhCCCCCcHHHHHHHHH
Confidence 357899999999999942 2345555555443 12 2223333333468889999999999999999888
Q ss_pred HHHHHH
Q 011433 467 PELERR 472 (486)
Q Consensus 467 dEfe~h 472 (486)
..+..-
T Consensus 85 ~~~~~~ 90 (388)
T COG0247 85 RKLAKG 90 (388)
T ss_pred HHHHHh
Confidence 877553
No 39
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=60.77 E-value=12 Score=37.36 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=45.0
Q ss_pred hhhhccCcCCCCccchhhHHH------------HHHHHHHHHcCCCCHHhHHHHHHHH---HHhc---cCCCCCCCccch
Q 011433 394 SYFYKHESCGQCTPCREGTGW------------LWMIMERLKVGNAKLEEIDMLQEVT---KQIE---GHTICALGDAAA 455 (486)
Q Consensus 394 ~~F~~~ESCGqC~PCReG~~~------------l~~iL~ri~~G~~~~~Dld~L~ela---~~i~---~~s~C~lg~~a~ 455 (486)
.+++.-..|++|+-|...||. +.++.+.+.+++.... -+.++++. +-+- .|..|.-.|+.-
T Consensus 143 ~~~~~~~~CI~Cg~C~saCP~~~~~~~f~GP~~~~~a~r~~~d~rd~~~-~~~~~~~l~~~~gi~~C~~C~~C~~vCPk~ 221 (239)
T PRK13552 143 DEIYELDRCIECGCCVAACGTKQMREDFVGAVGLNRIARFELDPRDERT-DEDFYELIGNDDGVFGCMSLLGCEDNCPKD 221 (239)
T ss_pred HHhhchhhccccchhHhhCCCCccCCCccChHHHHHHHHHhhCCCcchh-HHHHHHHhccCCCcCCCcCcCccchhCCCC
Confidence 356677899999999999993 2344444455543221 12232221 1222 355577778887
Q ss_pred HHHHHHHHhhHHHH
Q 011433 456 WPVQGLIRHFRPEL 469 (486)
Q Consensus 456 ~pv~s~I~~FrdEf 469 (486)
+++...|...|..+
T Consensus 222 I~~~~~I~~lr~~~ 235 (239)
T PRK13552 222 LPLQQQIAYLRRKM 235 (239)
T ss_pred CcHHHHHHHHHHHH
Confidence 88888888776554
No 40
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=60.27 E-value=14 Score=37.05 Aligned_cols=77 Identities=14% Similarity=0.153 Sum_probs=47.4
Q ss_pred hhhccCcCCCCccchhhHHHH---------H--HHHHHHHcCC---CCHHhHHHH---HHHHHHhccCCCCCCCccchHH
Q 011433 395 YFYKHESCGQCTPCREGTGWL---------W--MIMERLKVGN---AKLEEIDML---QEVTKQIEGHTICALGDAAAWP 457 (486)
Q Consensus 395 ~F~~~ESCGqC~PCReG~~~l---------~--~iL~ri~~G~---~~~~Dld~L---~ela~~i~~~s~C~lg~~a~~p 457 (486)
++..-.+|.+|+-|...||.. . ....++.... +....++.+ ..+-.+. .|..|...|+..++
T Consensus 142 ~~~~~~~CI~Cg~C~saCP~~~~~~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~-~C~~C~~vCP~~I~ 220 (244)
T PRK12385 142 KYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCT-FVGYCSEVCPKHVD 220 (244)
T ss_pred HHHHHHhcCcCccccCcCcCcccCCCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCc-CcccccccCCCCCC
Confidence 344567999999999999952 1 1223333221 122222222 1122333 57888888999999
Q ss_pred HHHHHHhhHHHHHHH
Q 011433 458 VQGLIRHFRPELERR 472 (486)
Q Consensus 458 v~s~I~~FrdEfe~h 472 (486)
+..+|+.-|.....+
T Consensus 221 ~~~~I~~~r~~~~~~ 235 (244)
T PRK12385 221 PAAAIQQGKVESAKD 235 (244)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999887766655
No 41
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=57.47 E-value=11 Score=39.80 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=35.4
Q ss_pred cEEEEEEccCCCceeEE-EeCCCCHHHHHHHccCCCcCCCCcccEEe
Q 011433 296 TKLFCVSGHVNKPCTVE-EEMSIPLKELIDRHCGGVRGGWDNLLAVI 341 (486)
Q Consensus 296 tk~vtVsG~V~~Pg~~e-vpiGtpl~eli~~~~GG~~~g~~~~~~vi 341 (486)
.+.|+|.|.|++|+.++ ..-++|+.|.|. .+||+.+...+.+.|+
T Consensus 238 ~~~v~V~Gavg~p~~~~~~~~~lTL~eALa-~aGGl~~~~Ad~~~V~ 283 (355)
T PRK15175 238 TEYVNVLGAAGVQGKHALVQRHSSVVDALA-LAKGLNDNLADPQAIF 283 (355)
T ss_pred CCEEEEEEeecCccccccCCCCCCHHHHHH-HcCCCCccccCccceE
Confidence 46799999999999987 578899999998 6999876423444444
No 42
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=55.78 E-value=13 Score=42.35 Aligned_cols=154 Identities=13% Similarity=0.186 Sum_probs=82.2
Q ss_pred EEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCccccc-cccccccChh-HHhhhccccccc
Q 011433 298 LFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKH-ICDDVLMDYD-ALKAVQSGLGTA 375 (486)
Q Consensus 298 ~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~~-~~~d~~~d~d-~l~~~g~~~Gtg 375 (486)
-|+|.|. -|++|-|.||-+.+.. +| +.-. .+ .. .+ .-..++.- .| -+.+|=. .+..+=.+.=..
T Consensus 5 ~~~idg~-----~~~~~~g~ti~~a~~~-~g-~~ip--~~-c~--~~-~~~~~g~C~~C-~V~v~g~~~~~~aC~t~~~~ 70 (652)
T PRK12814 5 SLTINGR-----SVTAAPGTSILEAAAS-AG-ITIP--TL-CF--HQ-ELEATGSCWMC-IVEIKGKNRFVPACSTAVSE 70 (652)
T ss_pred EEEECCE-----EEEeCCcCcHHHHHHH-cC-Cccc--cc-cC--CC-CCCCcccccee-EEEECCCcceecCcCCCCCC
Confidence 3677775 5899999999999984 54 2210 00 00 00 00011111 11 0111100 000011122345
Q ss_pred eEEeecCCccHHHHHHHHhhhhccCcCCCCc-cchhhHHH---HHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCC
Q 011433 376 AVIVMDKSTDVVDAIARLSYFYKHESCGQCT-PCREGTGW---LWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALG 451 (486)
Q Consensus 376 ~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~-PCReG~~~---l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg 451 (486)
++.|..++..+.++-+..++++...-|+.|. ||+.+||. +.+.++.+.+|+-.. -++.+ .+...--+.||..
T Consensus 71 Gm~v~t~~~~~~~~r~~~le~l~~~~c~~C~~pC~~~CP~~~~~~~~~~~~~~g~~~~-a~~~~---~~~~p~p~~~grv 146 (652)
T PRK12814 71 GMVIETENAELHAMRRQSLERLIEQHCGDCLGPCELACPAGCNIPGFIAAIARGDDRE-AIRII---KETIPLPGILGRI 146 (652)
T ss_pred CCEEEeCcHHHHHHHHHHHHHHHhhcccccCCccccCCCCCCcHHHHHHHHHCCCHHH-HHHHH---HhhCCccceeeCC
Confidence 6677777666665555677888888899998 99999994 677888888876332 23333 3333334555554
Q ss_pred ccc-----------hHHH-HHHHHhhHHHH
Q 011433 452 DAA-----------AWPV-QGLIRHFRPEL 469 (486)
Q Consensus 452 ~~a-----------~~pv-~s~I~~FrdEf 469 (486)
|+. -.|| ...|+.|--+.
T Consensus 147 C~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~ 176 (652)
T PRK12814 147 CPAPCEEACRRHGVDEPVSICALKRYAADR 176 (652)
T ss_pred cCchhhHHHcCCCCCCCcchhHHHHHHHHH
Confidence 443 1233 45566665544
No 43
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=53.55 E-value=3.7 Score=47.50 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=44.6
Q ss_pred cCcCCCCccchhhHHHH---HHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhHHHH
Q 011433 399 HESCGQCTPCREGTGWL---WMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPEL 469 (486)
Q Consensus 399 ~ESCGqC~PCReG~~~l---~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEf 469 (486)
...|.+|+.|...||.- .+.+.....|.-. .+..+.+ .|+ .|..|.-.|+...|+.++++..+.++
T Consensus 398 ~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~--~l~~~~d--~C~-~CG~C~evCP~gIpIvemI~~Ar~~~ 466 (784)
T TIGR00314 398 ANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLS--KLEQLEE--QCY-ACGRCEQACPKNIPIISMITKAGEDR 466 (784)
T ss_pred cccCCCcccchhhCCCCcchHHHHHHHhcCCcc--ccccCHh--hhh-hhhHHhccCCCCCCHHHHHHHHHHHH
Confidence 57999999999999953 2344444444321 1111222 344 68999999999999999999987753
No 44
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=52.85 E-value=15 Score=42.55 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=43.6
Q ss_pred cCcCCCCccchhhHHHH---HHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhHHHHH
Q 011433 399 HESCGQCTPCREGTGWL---WMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELE 470 (486)
Q Consensus 399 ~ESCGqC~PCReG~~~l---~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe 470 (486)
...|.+|+.|...||.. .+.+..+..|.. +.+.++...-..|..|.-.|+.-.|+.++++..+.++-
T Consensus 364 ~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~-----~~l~~~~~~Ct~CG~C~evCP~gIpi~~mi~~a~~~~v 433 (731)
T cd01916 364 AAKCTDCGWCTRACPNSLRIKEAMEAAKEGDF-----SGLADLFDQCVGCGRCEQECPKEIPIINMIEKAARERI 433 (731)
T ss_pred hhcCCCCCcccccCCCCCcHHHHHHHHhcCCh-----hhhhhhHhhhhhhhHHhhhCCCCCChHHHHHHHHHHHH
Confidence 56899999999999964 233444444332 22223222223688888889998888888887666543
No 45
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=52.28 E-value=15 Score=37.69 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=41.0
Q ss_pred hhhccCcCCCCccchhhHHHH----------HHHHH--HHHcC---CCCHHhHHHHHH---HHHHhccCCCCCCCccchH
Q 011433 395 YFYKHESCGQCTPCREGTGWL----------WMIME--RLKVG---NAKLEEIDMLQE---VTKQIEGHTICALGDAAAW 456 (486)
Q Consensus 395 ~F~~~ESCGqC~PCReG~~~l----------~~iL~--ri~~G---~~~~~Dld~L~e---la~~i~~~s~C~lg~~a~~ 456 (486)
++..-..|.+|+-|...||.. .-++. ++..+ ....+.++.+.+ +-.+. .|..|.-.|+...
T Consensus 182 ~~~~~~~CI~CG~C~saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~~~~erl~~l~~~~gl~~C~-~C~~C~~vCPkgI 260 (276)
T PLN00129 182 KLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDEYTKERLEALDDEFKLYRCH-TIRNCSNACPKGL 260 (276)
T ss_pred HHhhhhhCccccccccccCCCcccCcccccHHHHHHHHHhcCCccccchHHHHHHHHhcCCCCcCc-ChhhccccCCCCC
Confidence 444557899999999999932 11222 22122 112222222221 11222 4666777788877
Q ss_pred HHHHHHHhhHHHH
Q 011433 457 PVQGLIRHFRPEL 469 (486)
Q Consensus 457 pv~s~I~~FrdEf 469 (486)
++...|...|.+.
T Consensus 261 ~p~~~I~~lR~~~ 273 (276)
T PLN00129 261 NPAKAIAKIKQLL 273 (276)
T ss_pred CHHHHHHHHHHHH
Confidence 7777888776654
No 46
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=50.62 E-value=4.4 Score=43.75 Aligned_cols=88 Identities=14% Similarity=0.191 Sum_probs=55.5
Q ss_pred eEEeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHH----------------HHHHHHHcCCCCHHhHHHHHHHH
Q 011433 376 AVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLW----------------MIMERLKVGNAKLEEIDMLQEVT 439 (486)
Q Consensus 376 ~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~----------------~iL~ri~~G~~~~~Dld~L~ela 439 (486)
=+|++|+...=+ ..--.|.+.-.|++|+-|...||.-. .++.-+..|... -.++.
T Consensus 287 HlVlvDNGRs~~---~~~~~~re~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~------~~~~~ 357 (459)
T COG1139 287 HLVLVDNGRSEA---LADEEFREALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDA------AGDLP 357 (459)
T ss_pred EEEEEeCCchhh---ccChHHHHHHHhhcchHhhhcChhhhhccCeecccccCCcccceecchhcchhh------ccccc
Confidence 466677664210 11113555679999999999999422 233344444322 22333
Q ss_pred HHhccCCCCCCCccchHHHHHHHHhhHHHHHHH
Q 011433 440 KQIEGHTICALGDAAAWPVQGLIRHFRPELERR 472 (486)
Q Consensus 440 ~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe~h 472 (486)
..-..|+.|.-.|+..+|+..+|++-|..+...
T Consensus 358 ~~c~lcg~C~evCPv~Ipl~eli~~lR~~~~~~ 390 (459)
T COG1139 358 YACSLCGACTEVCPVKIPLPELIRKLRRVAAES 390 (459)
T ss_pred hhhccccCCCCcCCCCCCHHHHHHHHHHHHhhc
Confidence 333468888889999999999999988766543
No 47
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=50.28 E-value=7.3 Score=42.45 Aligned_cols=73 Identities=12% Similarity=0.078 Sum_probs=38.5
Q ss_pred hhhccCcCCCCccchhhHHHHH-------HHHHHH----HcCCCCHHhHHHHHHHHHHhc---cCCCCCCCccchHHH-H
Q 011433 395 YFYKHESCGQCTPCREGTGWLW-------MIMERL----KVGNAKLEEIDMLQEVTKQIE---GHTICALGDAAAWPV-Q 459 (486)
Q Consensus 395 ~F~~~ESCGqC~PCReG~~~l~-------~iL~ri----~~G~~~~~Dld~L~ela~~i~---~~s~C~lg~~a~~pv-~ 459 (486)
.+..-..|.+|+.|...||... ..+.++ ..+....+ .+...+.+.+- .|..|...|+....+ .
T Consensus 128 ~~~~~~~Ci~CG~C~~~CP~~~~~~~~gp~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~C~~C~~C~~~CP~gi~~~~ 205 (486)
T PRK06259 128 DIKKLRGCIECLSCVSTCPARKVSDYPGPTFMRQLARFAFDPRDEGD--REKEAFDEGLYNCTTCGKCVEVCPKEIDIPG 205 (486)
T ss_pred HHhCchhcccCccccccCCCCccccCcCHHHHHHHHHHhhCCcchhh--HHHHHhcCCCcCCCCcCcccCcCCCCCCchH
Confidence 4445689999999999999431 222222 22222111 11122222232 455677777776555 5
Q ss_pred HHHHhhHHHH
Q 011433 460 GLIRHFRPEL 469 (486)
Q Consensus 460 s~I~~FrdEf 469 (486)
..|...|..+
T Consensus 206 ~~i~~~R~~~ 215 (486)
T PRK06259 206 KAIEKLRALA 215 (486)
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 48
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=49.47 E-value=16 Score=39.13 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccc------hHHHH
Q 011433 386 VVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAA------AWPVQ 459 (486)
Q Consensus 386 iV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a------~~pv~ 459 (486)
+.+.+++.+ +.|-+|+.|.--|+.-.++-+++.- +..|++.+ ++.-.+|..|-..|+- ...+-
T Consensus 24 ~~~e~~r~~-----~iC~~Cr~C~~~CpvfP~l~~r~~~---~~~d~~~~---a~~C~~Cg~C~~~CP~apPhef~i~ip 92 (389)
T PRK15033 24 PEAEVARQM-----QICNACRYCEGFCAVFPAMTRRLEF---GKADIHYL---ANLCHNCGACLHACQYAPPHEFAVNVP 92 (389)
T ss_pred HHHHHHHHh-----HhCCCCCCccccCCCchhhhhhhcC---ChhhhHHH---HHhCcCcccccccCcCCCCcccCCCHH
Confidence 344455544 7899999999999976666555532 33454444 4434578888777776 33344
Q ss_pred HHHHhhHH
Q 011433 460 GLIRHFRP 467 (486)
Q Consensus 460 s~I~~Frd 467 (486)
+.+..-|.
T Consensus 93 ~~l~~~r~ 100 (389)
T PRK15033 93 KAMAQVRL 100 (389)
T ss_pred HHHHHHHH
Confidence 45554443
No 49
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=47.32 E-value=4.7 Score=42.43 Aligned_cols=71 Identities=11% Similarity=0.204 Sum_probs=41.8
Q ss_pred cCcCCCCccchhhHHHHHHH---H--HHHHcCCCCHHhH---HHHH-HHHHHhccCCCCCCCccchHHHHHHHHhhHHHH
Q 011433 399 HESCGQCTPCREGTGWLWMI---M--ERLKVGNAKLEEI---DMLQ-EVTKQIEGHTICALGDAAAWPVQGLIRHFRPEL 469 (486)
Q Consensus 399 ~ESCGqC~PCReG~~~l~~i---L--~ri~~G~~~~~Dl---d~L~-ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEf 469 (486)
-+.|.+|+.|...||.-... . +.+ ...+..-.+ +... .+..++ .|..|...|++.+++..+|...|.++
T Consensus 6 ~~~Ci~Cg~C~~~CP~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~C~-~C~~C~~~CP~~i~~~~~i~~~r~~~ 83 (396)
T PRK11168 6 FDSCIKCTVCTTACPVARVNPLYPGPKQA-GPDGERLRLKDGALYDESLKYCS-NCKRCEVACPSGVKIGDIIQRARAKY 83 (396)
T ss_pred hhhcCCCCCCCccCCCcccCCCCCChhhh-ccHHHHHhccchhhcCCCCCcCc-CcCccCcccCCCCCHHHHHHHHHHHH
Confidence 36799999999999953210 0 000 000000000 0111 122333 68888899999999999999998876
Q ss_pred HH
Q 011433 470 ER 471 (486)
Q Consensus 470 e~ 471 (486)
..
T Consensus 84 ~~ 85 (396)
T PRK11168 84 VT 85 (396)
T ss_pred HH
Confidence 53
No 50
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=44.35 E-value=12 Score=43.22 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=18.7
Q ss_pred cCcCCCCccchhhHHHHHHHHHHHHcCC
Q 011433 399 HESCGQCTPCREGTGWLWMIMERLKVGN 426 (486)
Q Consensus 399 ~ESCGqC~PCReG~~~l~~iL~ri~~G~ 426 (486)
..||-+|+.|...||- ..+|++-..|+
T Consensus 191 ~SSCVsCG~CvtVCP~-nALmek~m~g~ 217 (978)
T COG3383 191 ESSCVSCGACVTVCPV-NALMEKSMLGE 217 (978)
T ss_pred cccccccCccceecch-hhhhhhhhhcc
Confidence 6799999999999994 22444433433
No 51
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=43.68 E-value=8.1 Score=38.89 Aligned_cols=74 Identities=14% Similarity=0.192 Sum_probs=39.9
Q ss_pred hhhccCcCCCCccchhhHHHHHH--H----HHH--HH-cCCCCH-HhHH----HHHH--HHHHhccCCCCCCCccchHHH
Q 011433 395 YFYKHESCGQCTPCREGTGWLWM--I----MER--LK-VGNAKL-EEID----MLQE--VTKQIEGHTICALGDAAAWPV 458 (486)
Q Consensus 395 ~F~~~ESCGqC~PCReG~~~l~~--i----L~r--i~-~G~~~~-~Dld----~L~e--la~~i~~~s~C~lg~~a~~pv 458 (486)
+++..+.|++|+-|...||.... . +.+ +. .++... +.++ .+.+ +..++ .|..|...|+..+|+
T Consensus 152 ~~~~~~~CI~CG~C~saCP~~~~~~f~Gp~~~~~~l~p~~~~~r~~~~~~~~~~~~~~gv~~C~-~Cg~Cs~VCPk~I~~ 230 (250)
T PRK07570 152 RAFDAAACIGCGACVAACPNGSAMLFTGAKVSHLALLPQGQPERARRVRAMVAQMDEEGFGNCT-NTGECEAVCPKGISL 230 (250)
T ss_pred hhhCccccCCCcccccccCCcccccccchhhhhhhhCcccchhHHHHHHHHHHHHhccCcccCc-ccCccccccCCCCCH
Confidence 45567899999999999997421 0 011 11 111111 1111 1111 22344 578888999998887
Q ss_pred HHHHHhhHHHH
Q 011433 459 QGLIRHFRPEL 469 (486)
Q Consensus 459 ~s~I~~FrdEf 469 (486)
.++++.=+..+
T Consensus 231 ~~I~~l~r~~~ 241 (250)
T PRK07570 231 ENIARMNREYL 241 (250)
T ss_pred HHHHHHHHHHH
Confidence 64444434333
No 52
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=41.62 E-value=16 Score=42.40 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=44.0
Q ss_pred ccCcCCCCccchhhHHHHH---HHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhHHHHH
Q 011433 398 KHESCGQCTPCREGTGWLW---MIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELE 470 (486)
Q Consensus 398 ~~ESCGqC~PCReG~~~l~---~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe 470 (486)
....|.+|+.|...||.-. +.+....+|... .+..+ ...++ .|..|.-.|+.-.|+.+++...+.+.-
T Consensus 402 eadrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~--~l~~l--~~~Ct-~CG~CeeVCPtgIpi~emi~~Ar~~~V 472 (781)
T PRK00941 402 LAKKCTECGWCVRVCPNELPIPEAMEAAAKGDLS--KLEDL--YDKCI-GCGRCEQVCPKNIPIVSMIEKAAQHRI 472 (781)
T ss_pred hhhhCcCCCCccccCCCCcchhHHHHHHhcCChh--hhhhh--hhhcc-chhHHhhhCCCCCChHHHHHHHHHHHH
Confidence 3468999999999999632 334333343211 11112 22344 688888899999999999988776644
No 53
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=39.42 E-value=12 Score=35.18 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=21.1
Q ss_pred cCCCCccchhhHHHHHHHHHHHHcC
Q 011433 401 SCGQCTPCREGTGWLWMIMERLKVG 425 (486)
Q Consensus 401 SCGqC~PCReG~~~l~~iL~ri~~G 425 (486)
|-+.|.|||+-+|.+.+.++.+.+-
T Consensus 41 sA~wC~pCR~FTP~Lk~fYe~l~~~ 65 (157)
T KOG2501|consen 41 SAHWCPPCRDFTPILKDFYEELKDN 65 (157)
T ss_pred EEEECCchhhCCchHHHHHHHHHhc
Confidence 4557779999999999999988764
No 54
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=37.96 E-value=23 Score=35.76 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=41.7
Q ss_pred hhhhccCcCCCCccchhhHHHHH------------HHHHHH----HcCCCCHHhHHHHHHHH--HHhc---cCCCCCCCc
Q 011433 394 SYFYKHESCGQCTPCREGTGWLW------------MIMERL----KVGNAKLEEIDMLQEVT--KQIE---GHTICALGD 452 (486)
Q Consensus 394 ~~F~~~ESCGqC~PCReG~~~l~------------~iL~ri----~~G~~~~~Dld~L~ela--~~i~---~~s~C~lg~ 452 (486)
-++..-..|.+|+-|...||... ..+.++ .+-+... +.+..+. ..+. .|..|.-.|
T Consensus 136 ~~~~~~~~CI~CG~C~s~CPv~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~~---~rl~~~~~~~gl~~C~~C~~C~~vC 212 (251)
T PRK12386 136 ERSQEFRKCIECFLCQNVCHVVRDHEENKPAFAGPRFLMRIAELEMHPLDTA---DRRAEAQEEHGLGYCNITKCCTEVC 212 (251)
T ss_pred HHHhchhhcccCCcccCcCCcccccCCCcccccCHHHHHHHHHhhcCccchH---HHHHHhhcccCcccCcCCCCcCCcC
Confidence 35667789999999999999542 122221 1111111 2222221 1122 355677778
Q ss_pred cchHHHH-HHHHhhHHHHHHH
Q 011433 453 AAAWPVQ-GLIRHFRPELERR 472 (486)
Q Consensus 453 ~a~~pv~-s~I~~FrdEfe~h 472 (486)
+...++. .+|..-+.....+
T Consensus 213 PkgI~~~~~~I~~lr~~~~~~ 233 (251)
T PRK12386 213 PEHIKITDNALIPMKERVVDR 233 (251)
T ss_pred CCCcChhHHHHHHHHHHHHHh
Confidence 8877765 4676666554433
No 55
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=35.27 E-value=34 Score=25.46 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=13.5
Q ss_pred CcCCCCccchhhHHHHHHHH
Q 011433 400 ESCGQCTPCREGTGWLWMIM 419 (486)
Q Consensus 400 ESCGqC~PCReG~~~l~~iL 419 (486)
+.|.+|+-|...+|.....-
T Consensus 3 ~~Ci~Cg~C~~~CP~~~~~~ 22 (57)
T PF13183_consen 3 SKCIRCGACTSVCPVYRNTG 22 (57)
T ss_dssp HC--S-SHHHHCSHHHHHHH
T ss_pred HHccCccChHHHChhhhccc
Confidence 57999999999999655554
No 56
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=35.08 E-value=11 Score=39.57 Aligned_cols=53 Identities=26% Similarity=0.450 Sum_probs=33.9
Q ss_pred cCcCCCCccchhhHHH-------------HHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccch
Q 011433 399 HESCGQCTPCREGTGW-------------LWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAA 455 (486)
Q Consensus 399 ~ESCGqC~PCReG~~~-------------l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~ 455 (486)
++.||.|+.|.+.||. -...|. +.++-. +.++..+ +...+.+|.+|...|+--
T Consensus 184 ~~~Cg~C~~CldaCPt~Al~~~~~~~~~~cis~lt-~~~~~~-p~e~r~~--~~n~iygCd~C~~vCPwn 249 (337)
T COG1600 184 EDHCGSCTRCLDACPTGALVAPYTVDARRCISYLT-IEKGGA-PEEFRPL--IGNRIYGCDICQKVCPWN 249 (337)
T ss_pred CccChhhHHHHhhCCcccccCCCccchhHHhhhhh-hhccCC-cHHHHHh--ccCceecCchHHHhCCcc
Confidence 3899999999999993 112332 333333 3443333 556677888888888654
No 57
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=34.73 E-value=16 Score=38.96 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=30.2
Q ss_pred CcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccc
Q 011433 400 ESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAA 454 (486)
Q Consensus 400 ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a 454 (486)
+.|-+|+.|..-|+.-..+-++. +-+..|++.+-++| ..|..|-..|+-
T Consensus 14 ~iC~~C~~C~~~CpvfPa~~~~~---~~~~~d~~~la~lC---hnC~~C~~~CPy 62 (372)
T TIGR02484 14 NLCNSCGYCTGLCAVFPAAQGRP---DLTRGDLRHLAHLC---HDCQSCWHDCQY 62 (372)
T ss_pred HhCcCcCCccccCCCcccccccc---ccCHHHHHHHHHHC---cCcccccccCcC
Confidence 78999999999999654443322 11345555554443 556666555554
No 58
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=32.96 E-value=44 Score=35.76 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=45.6
Q ss_pred cCcCCCCccchhh--HHHHHHHHHHHHcCCCCHH---hHHHHHH-----------HHHHhccCCCCCCCccchHHHHHHH
Q 011433 399 HESCGQCTPCREG--TGWLWMIMERLKVGNAKLE---EIDMLQE-----------VTKQIEGHTICALGDAAAWPVQGLI 462 (486)
Q Consensus 399 ~ESCGqC~PCReG--~~~l~~iL~ri~~G~~~~~---Dld~L~e-----------la~~i~~~s~C~lg~~a~~pv~s~I 462 (486)
...|..|.||-.| .|...++++......-... .+.++.. -++++ +|+.|-=-|+-...|.++|
T Consensus 295 Ct~C~yC~PCP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~g~as~Ci-eCgqCl~~CPq~l~Ip~~L 373 (391)
T COG1453 295 CTGCRYCLPCPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLENGGHWFPGPKGKASDCI-ECGQCLEKCPQHLDIPELL 373 (391)
T ss_pred CccccccCcCCCCCChHHHHHHHHHHHhhccchhhHHHHHHHhccCccCCCCcccccccc-hhhhhhhcCCCcCcHHHHH
Confidence 4567777788888 4456666666555332222 2333333 22334 5777777788888888999
Q ss_pred HhhHHHHHHH
Q 011433 463 RHFRPELERR 472 (486)
Q Consensus 463 ~~FrdEfe~h 472 (486)
+.-.++|+..
T Consensus 374 k~v~~~leg~ 383 (391)
T COG1453 374 KEVHEELEGE 383 (391)
T ss_pred HHHHHHhcch
Confidence 8888877643
No 59
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=31.92 E-value=1.7e+02 Score=33.16 Aligned_cols=105 Identities=24% Similarity=0.333 Sum_probs=62.6
Q ss_pred hhHHHhcCCchhcHHHHhcChHHHHHHHHHccccCCCCCCCccccccccCCC--CCCCCCcEEEEEccCCCCcchhhhHH
Q 011433 76 LKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPK--VSDGRPSYLVVNADESEPGTCKDREI 153 (486)
Q Consensus 76 ~~~~~~~ggy~~l~~~~~~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~--~~~~~~~~lVvNa~E~EP~~~~D~~l 153 (486)
+++|-=.|+|.++--+.--....+++.+-.+| .|- .-|.=+|-|=+.+.. ....+--.+|||| +|||..
T Consensus 105 i~ey~Y~g~Y~~VyPIKvNQ~r~vVe~Lv~~g-~~~-~~GLEAGSK~ELm~vLA~~~~~~~~IvCNG-------yKDrEy 175 (652)
T COG1166 105 IEEYGYPGGYFAVYPIKVNQHRRVVESLVASG-KGY-PLGLEAGSKAELMAVLAHAGNPGSLIVCNG-------YKDREY 175 (652)
T ss_pred HHHhCCCCceeEEEEeeecchHHHHHHHHhcc-CCC-CCcccCCCHHHHHHHHHhcCCCCCeEEecC-------cccHHH
Confidence 34444557787654443345567888888876 111 223444555443210 0112335699999 799855
Q ss_pred hhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCc
Q 011433 154 MRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGL 204 (486)
Q Consensus 154 m~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~ 204 (486)
++ +.++++-+| .+++|.|+.- ..|+..|++|.+.|.
T Consensus 176 I~---------lAlig~kLG-h~v~ivIEkl-----sEl~~VleeA~~lgv 211 (652)
T COG1166 176 IR---------LALIGEKLG-HKVYIVIEKL-----SELDLVLEEAKQLGV 211 (652)
T ss_pred HH---------HHHHHHHhC-CceEEEEech-----HHHHHHHHHHHHcCC
Confidence 54 344556666 7999999863 456777888876543
No 60
>PRK13984 putative oxidoreductase; Provisional
Probab=31.86 E-value=31 Score=38.63 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=24.9
Q ss_pred HHHHHHHHhccCCCCCCCccchHHHHHHHHhhHHH
Q 011433 434 MLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPE 468 (486)
Q Consensus 434 ~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdE 468 (486)
.+.+...|+ .|+.|...|+..+++...++.-++.
T Consensus 180 ~~~~~~~C~-~Cg~C~~~CP~~~~i~~~~~~i~~~ 213 (604)
T PRK13984 180 AMQEAARCV-ECGICTDTCPAHMDIPQYIKAIYKD 213 (604)
T ss_pred HHHhhhhhc-CCCcccccCCCCCCHHHHHHHHHcC
Confidence 344555677 5888999999888888887766654
No 61
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=29.87 E-value=6.5 Score=41.52 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=41.2
Q ss_pred CcCCCCccchhhHHHHHHHHHHHH--cCCCCHHhHHH------HHHHHHHhccCCCCCCCccchHHHHHHHHhhHHHHH
Q 011433 400 ESCGQCTPCREGTGWLWMIMERLK--VGNAKLEEIDM------LQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELE 470 (486)
Q Consensus 400 ESCGqC~PCReG~~~l~~iL~ri~--~G~~~~~Dld~------L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe 470 (486)
+.|.+|+.|...||.-... ..+. .+.+....... ..+..+.-..|..|.-.|+..+++..+|..+|.++.
T Consensus 5 ~~Ci~Cg~C~~~Cp~~~~~-~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~i~~~~~i~~~R~~~~ 82 (397)
T TIGR03379 5 ESCIKCTVCTVYCPVAKAN-PLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSDVKIGDIIARARNKYQ 82 (397)
T ss_pred hhCCCCCCCcccCcCcccc-CCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCCCCHHHHHHHHHHHHH
Confidence 6899999999999953211 0000 00111110111 111122223577788888899999999999999875
No 62
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=29.52 E-value=4.4e+02 Score=27.33 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=75.1
Q ss_pred CceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCccccccccccccChhHHhhhccccccceEEeecCCccH
Q 011433 307 KPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHICDDVLMDYDALKAVQSGLGTAAVIVMDKSTDV 386 (486)
Q Consensus 307 ~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~~~~~d~~~d~d~l~~~g~~~Gtg~IIVld~~~ci 386 (486)
..+++=|-.|--+.++++. .| ...|+.|| .=|.++.- |-+.++ ...+..-|+||+++..+
T Consensus 96 ~~~vVAv~~g~g~~~lf~~-~G--------v~~vi~gg---qt~nPS~~-------dl~~Ai-~~~~a~~VivLPNn~ni 155 (313)
T PF13684_consen 96 DRGVVAVAPGEGLAELFRS-LG--------VDVVISGG---QTMNPSTE-------DLLNAI-EKVGADEVIVLPNNKNI 155 (313)
T ss_pred CeEEEEEecCccHHHHHHh-CC--------CeEEEeCC---CCCCCCHH-------HHHHHH-HhCCCCeEEEEeCCchH
Confidence 3478888889999999974 43 23689999 33444321 222222 23478899999999999
Q ss_pred HHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHHcCCCCHHhHHHHHHHHHHh
Q 011433 387 VDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLKVGNAKLEEIDMLQEVTKQI 442 (486)
Q Consensus 387 V~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~~G~~~~~Dld~L~ela~~i 442 (486)
+-.+....+...... ....||+.-..-+.-++..- ......++...|.+.+..+
T Consensus 156 ~~aa~qa~~~~~~~~-v~VipTks~~qGlaAl~~~d-p~~~~~~n~~~M~ea~~~v 209 (313)
T PF13684_consen 156 ILAAEQAARLSEDKN-VVVIPTKSIPQGLAALLVFD-PEADLEENVEAMTEAAARV 209 (313)
T ss_pred HHHHHHHHHHhcCCC-EEEEecCCHHHHHHHHHHhC-ccCChHHHHHHHHHHHhhC
Confidence 988888887764443 66778888877666665432 2233345666666665554
No 63
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=28.06 E-value=24 Score=26.85 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=12.8
Q ss_pred CCCCccchhhHHH-------HHHHHHHHHcC
Q 011433 402 CGQCTPCREGTGW-------LWMIMERLKVG 425 (486)
Q Consensus 402 CGqC~PCReG~~~-------l~~iL~ri~~G 425 (486)
|.+|+.|+..||. ...+++++..+
T Consensus 2 C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~ 32 (61)
T PF13534_consen 2 CTQCGYCVPACPSYIATPDEPRSPMRAIYLG 32 (61)
T ss_dssp ----STTGGGSHHHHHCTTTHHHHHHHHHHC
T ss_pred CCCCCcCcccCCCccccCccHHHHHHHHHHh
Confidence 6778888887774 33566666553
No 64
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.21 E-value=45 Score=31.24 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=17.1
Q ss_pred CCccchhhHHHHHHHHHHH
Q 011433 404 QCTPCREGTGWLWMIMERL 422 (486)
Q Consensus 404 qC~PCReG~~~l~~iL~ri 422 (486)
+|+||+...|.+.++....
T Consensus 72 WCgPCk~l~P~l~~~~~~~ 90 (150)
T KOG0910|consen 72 WCGPCKMLGPILEELVSEY 90 (150)
T ss_pred cCccHhHhhHHHHHHHHhh
Confidence 8899999999999988876
No 65
>PRK13984 putative oxidoreductase; Provisional
Probab=25.40 E-value=40 Score=37.71 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=29.9
Q ss_pred CcCCCCccchhhHHH---HHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCc
Q 011433 400 ESCGQCTPCREGTGW---LWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGD 452 (486)
Q Consensus 400 ESCGqC~PCReG~~~---l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~ 452 (486)
..|-.|++|...||. +.+.++.+.+|.-... ++.+.+...-..+|+..|
T Consensus 185 ~~C~~Cg~C~~~CP~~~~i~~~~~~i~~~~~~~a----~~~~~~~np~~~~~g~vC 236 (604)
T PRK13984 185 ARCVECGICTDTCPAHMDIPQYIKAIYKDDLEEG----LRWLYKTNPLSMVCGRVC 236 (604)
T ss_pred hhhcCCCcccccCCCCCCHHHHHHHHHcCCHHHH----HHHHHhcCCccchhhCcC
Confidence 469999999999994 6667777766643332 222222222345566555
No 66
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=25.29 E-value=3.1e+02 Score=28.71 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=74.8
Q ss_pred eEEeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHH------------------------cCCCCHHh
Q 011433 376 AVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLK------------------------VGNAKLEE 431 (486)
Q Consensus 376 ~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~------------------------~G~~~~~D 431 (486)
.|+.++....-.+.+++++.- -.|.+.=|..|..-++.++++|+.+- +|.++++.
T Consensus 143 ~I~ftPfG~~q~~Iikkii~~-lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaVPgt~~q~Yi~egyAtEEq 221 (340)
T TIGR01723 143 IITWLPKGNKQPDIIKKFIDD-IPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGCVPEMKGQVYIAEGYASEEA 221 (340)
T ss_pred EEEEcCCCCCchHHHHHHHhh-CCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCCCCCCCCceEeecccCCHHH
Confidence 556666666667888888753 36888999999999999999998743 35578899
Q ss_pred HHHHHHHHHHhcc----------CCCCCCCccchHHHHHHHHhhHHHHHHHH
Q 011433 432 IDMLQEVTKQIEG----------HTICALGDAAAWPVQGLIRHFRPELERRI 473 (486)
Q Consensus 432 ld~L~ela~~i~~----------~s~C~lg~~a~~pv~s~I~~FrdEfe~hi 473 (486)
++.+.+|++.+++ ...|-.|.....++++.|-.||+--..-+
T Consensus 222 I~klveL~~sa~k~ay~~PA~LvspV~DMgS~VTAv~~aGiL~Y~~~~t~Il 273 (340)
T TIGR01723 222 VNKLYELGKKARGKAFKMPANLLGPVCDMCSAVTAIVYAGLLAYRDAVTKIL 273 (340)
T ss_pred HHHHHHHHHHhCCCeeecchhhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988753 45688888888888888888887655544
No 67
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=24.59 E-value=3.4e+02 Score=28.39 Aligned_cols=97 Identities=21% Similarity=0.227 Sum_probs=74.6
Q ss_pred eEEeecCCccHHHHHHHHhhhhccCcCCCCccchhhHHHHHHHHHHHH------------------------cCCCCHHh
Q 011433 376 AVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWMIMERLK------------------------VGNAKLEE 431 (486)
Q Consensus 376 ~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~~l~~iL~ri~------------------------~G~~~~~D 431 (486)
.|+.++....-.+.+++++.- -.|.+.=|..|..-++.++++|+.+- +|.++++.
T Consensus 145 ~I~ftPfG~~t~~Iikki~~~-ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaVPgt~Gq~~i~egyAtEEq 223 (342)
T PRK00961 145 VITWLPKGGMQPDIIEKFADD-IKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGAVPEMKGQVYIAEGYADEEA 223 (342)
T ss_pred EEEecCCCCCchHHHHHHHhh-CCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCCCCCCCCceecccccCCHHH
Confidence 556666666667888887753 36888999999999999999998643 34578899
Q ss_pred HHHHHHHHHHhcc----------CCCCCCCccchHHHHHHHHhhHHHHHHHH
Q 011433 432 IDMLQEVTKQIEG----------HTICALGDAAAWPVQGLIRHFRPELERRI 473 (486)
Q Consensus 432 ld~L~ela~~i~~----------~s~C~lg~~a~~pv~s~I~~FrdEfe~hi 473 (486)
++.+.+|++.+++ ...|-.|.....++++.|-.||+--..-+
T Consensus 224 I~klveL~~sa~k~ay~~PA~lvspV~DMgS~VTAv~~aGiL~Y~~~~tqIl 275 (342)
T PRK00961 224 VEKLYEIGKKARGNAFKMPANLIGPVCDMCSAVTAIVYAGILAYRDAVTQIL 275 (342)
T ss_pred HHHHHHHHHHhCCCeeecchhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988753 35688888888888888888887655544
No 68
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=21.97 E-value=1.5e+02 Score=32.11 Aligned_cols=110 Identities=19% Similarity=0.122 Sum_probs=68.1
Q ss_pred cCCCC-cceEEeccccccCCChhHH-HhcCCchhcHHHHhcChHHHHHHH-HHccccCCCCCCCccccccccCCCCCCCC
Q 011433 56 GGLKD-EDRIFTNLYGMHDPFLKGA-MKRGDWHRTKDLVLKGADWIVNEV-KKSGLRGRGGAGFPSGLKWSFMPKVSDGR 132 (486)
Q Consensus 56 ~~~~~-~~~i~~~~~g~~~~~~~~~-~~~ggy~~l~~~~~~~~e~ii~~i-~~sGl~G~GGAGFPT~~K~~~~~~~~~~~ 132 (486)
|.++. +.-+-...+|.+|+.+=-| +..++| +++++.+.+ ++|||.|.-| + ..+
T Consensus 232 mG~tpLeGl~mgtRsG~lDp~~~~~l~~~~~~---------s~~e~~~~Ln~~SGLlg~sG--------~-------s~D 287 (404)
T TIGR00016 232 MGFTPLEGLMMGTRSGDIDPAIISYLAETLGM---------SADDIENTLNKKSGLLGISG--------L-------SSD 287 (404)
T ss_pred CCCCCccCCCCCCCCCCCChHHHHHHHHhcCC---------CHHHHHHHHhhcccceEecC--------C-------CCC
Confidence 44555 5566667899999954444 455554 566776554 7899999766 1 122
Q ss_pred CcEEEEEccCCCCcchhhhHHhhcChHHHHHHHHHHHHhhC--CCEEEE--EEcCCCHHHHHHH
Q 011433 133 PSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMR--ASAAYI--YIRGEYVNERKNL 192 (486)
Q Consensus 133 ~~~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~g--A~~~~I--~I~~~~~~a~~~l 192 (486)
.+.|.-.+.|++| +=+..++-+-++|..-+--.+-++| .+..++ .|-++.+...+.+
T Consensus 288 ~Rel~~~~~~gd~---~A~lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i 348 (404)
T TIGR00016 288 LRDIEDAYAEGNE---QAQLAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELV 348 (404)
T ss_pred HHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHH
Confidence 3444444455555 3346777777888888877777777 555555 5555655443333
No 69
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=21.47 E-value=39 Score=32.17 Aligned_cols=41 Identities=17% Similarity=0.385 Sum_probs=24.3
Q ss_pred ChhHHhhhccccccceEEeecCCccHHHHHHHHhhhhccCcCCCCccchh
Q 011433 361 DYDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCRE 410 (486)
Q Consensus 361 d~d~l~~~g~~~Gtg~IIVld~~~ciV~~~~~~~~F~~~ESCGqC~PCRe 410 (486)
+-..+.+....+|+..+..-....|... ..+.||+|.+|.+
T Consensus 160 ~K~eI~~la~~~g~~~~~~~~t~sC~~~---------~~~~CG~C~~C~~ 200 (201)
T TIGR00364 160 TKAEIVQLADELGVLDLVIKLTYSCYAG---------GGEGCGKCPSCML 200 (201)
T ss_pred CHHHHHHHHHHcCCccccHhhCCcCCCc---------CCCCCCCChhhhc
Confidence 4455555555666554444444455332 2469999999974
No 70
>PRK06437 hypothetical protein; Provisional
Probab=21.17 E-value=1.7e+02 Score=23.19 Aligned_cols=41 Identities=29% Similarity=0.548 Sum_probs=29.7
Q ss_pred EEEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCC
Q 011433 297 KLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGG 344 (486)
Q Consensus 297 k~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG 344 (486)
-+++|.|..++ .++++-++++.||++. -| +.. +-.+|...|
T Consensus 3 ~~~~v~g~~~~--~~~i~~~~tv~dLL~~-Lg-i~~---~~vaV~vNg 43 (67)
T PRK06437 3 AMIRVKGHINK--TIEIDHELTVNDIIKD-LG-LDE---EEYVVIVNG 43 (67)
T ss_pred ceEEecCCcce--EEEcCCCCcHHHHHHH-cC-CCC---ccEEEEECC
Confidence 36788887554 4788899999999995 44 543 234788888
No 71
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=21.01 E-value=53 Score=35.70 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=23.4
Q ss_pred cCcCCCCc--cchhhHH---HHHHHHHHHHcCCCC
Q 011433 399 HESCGQCT--PCREGTG---WLWMIMERLKVGNAK 428 (486)
Q Consensus 399 ~ESCGqC~--PCReG~~---~l~~iL~ri~~G~~~ 428 (486)
..-|.+|. ||+.+|| .+.+.++.+.+|+-.
T Consensus 39 ~~~c~~c~~~~C~~~CP~~~~~~~~~~~~~~g~~~ 73 (467)
T TIGR01318 39 ADRCLYCGNPYCEWKCPVHNAIPQWLQLVQEGRID 73 (467)
T ss_pred HHhcccCCCccccccCCCCCcHHHHHHHHHCCCHH
Confidence 35688887 8999999 477788888887743
No 72
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=20.96 E-value=2.3e+02 Score=30.63 Aligned_cols=105 Identities=18% Similarity=0.058 Sum_probs=68.5
Q ss_pred CCCC-cceEEeccccccCCChhHHHhcCCchhcHHHHhcChHHHHHHH-HHccccCCCCCCCccccccccCCCCCCCCCc
Q 011433 57 GLKD-EDRIFTNLYGMHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEV-KKSGLRGRGGAGFPSGLKWSFMPKVSDGRPS 134 (486)
Q Consensus 57 ~~~~-~~~i~~~~~g~~~~~~~~~~~~ggy~~l~~~~~~~~e~ii~~i-~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~ 134 (486)
+++. +.-+.-.++|.+||.+=.|+.+ -..|+.++|.+.+ |+|||.|.-| . ..+.+
T Consensus 227 GfTPLeGl~MGTRsGdiDP~ii~~l~~--------~~~~s~~~i~~~LNkkSGllGlSg--------~-------ssD~R 283 (396)
T COG0282 227 GFTPLEGLMMGTRSGDIDPGIILYLME--------QEGMSAEEIDTLLNKKSGLLGLSG--------L-------SSDMR 283 (396)
T ss_pred CCCcccceeccCCCCCCChHHHHHHHH--------hcCCCHHHHHHHHhhhcccccccc--------c-------cchHH
Confidence 3443 4556778899999988878755 1247888888766 7899999876 1 23456
Q ss_pred EEEEEccCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEE---EEcCCCHHH
Q 011433 135 YLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYI---YIRGEYVNE 188 (486)
Q Consensus 135 ~lVvNa~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I---~I~~~~~~a 188 (486)
+|.-+.+++++ .+.-++-+-|.|-.-+.--+-+++--.++| +|-++.+..
T Consensus 284 ~l~~~~~~g~~----A~lA~~~f~~Ri~kyIg~y~a~L~glDaiVFTaGIGENs~~i 336 (396)
T COG0282 284 DLEEAAAEGNE----AKLALDMFVYRIAKYIGSYAAALGGLDALVFTAGIGENSALV 336 (396)
T ss_pred HHHHHhccCch----HHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCccccCcHHH
Confidence 77777777754 344566666777766655555555444444 456666543
Done!