Query 011433
Match_columns 486
No_of_seqs 272 out of 1780
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:02:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_1 NADH-quinone oxidoreduc 100.0 5E-123 2E-127 973.8 40.7 412 63-479 15-431 (438)
2 2j58_A WZA, outer membrane lip 90.2 0.48 1.6E-05 48.4 7.0 37 296-333 150-187 (359)
3 3vr8_B Iron-sulfur subunit of 80.8 1.2 4E-05 44.2 4.1 77 396-473 176-270 (282)
4 2j58_A WZA, outer membrane lip 71.0 3.2 0.00011 42.3 4.3 45 296-341 234-279 (359)
5 2h88_B Succinate dehydrogenase 63.0 1.5 5.3E-05 42.1 0.0 76 396-472 152-245 (252)
6 3p42_A Predicted protein; beta 50.7 17 0.0006 34.7 5.1 48 296-344 127-175 (236)
7 2bs2_B Quinol-fumarate reducta 49.5 4.6 0.00016 38.2 0.8 73 397-469 146-235 (241)
8 1kf6_B Fumarate reductase iron 48.8 3.2 0.00011 39.3 -0.4 76 396-472 142-234 (243)
9 2wdq_B Succinate dehydrogenase 45.9 7.5 0.00026 36.6 1.7 73 396-470 143-234 (238)
10 2qgv_A Hydrogenase-1 operon pr 33.9 12 0.00042 33.0 1.0 39 404-443 47-88 (140)
11 3cf4_A Acetyl-COA decarboxylas 27.4 12 0.0004 42.3 -0.3 68 399-471 414-484 (807)
12 2l32_A Small archaeal modifier 23.3 89 0.003 24.2 4.2 39 308-354 12-50 (74)
No 1
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_1* 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=100.00 E-value=5.2e-123 Score=973.76 Aligned_cols=412 Identities=47% Similarity=0.856 Sum_probs=396.6
Q ss_pred eEEeccccccC-CChhHHHhcCCchhcHHHHh-cChHHHHHHHHHccccCCCCCCCccccccccCCCCCCCCCcEEEEEc
Q 011433 63 RIFTNLYGMHD-PFLKGAMKRGDWHRTKDLVL-KGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNA 140 (486)
Q Consensus 63 ~i~~~~~g~~~-~~~~~~~~~ggy~~l~~~~~-~~~e~ii~~i~~sGl~G~GGAGFPT~~K~~~~~~~~~~~~~~lVvNa 140 (486)
++.+..++.++ +++|+|+++|||++|++++. +++++|+++|++||||||||||||||+||+++++ .+.+++||||||
T Consensus 15 ~~~~~~~~~~~~~~l~~y~~~ggy~~l~~~l~~~~~~~ii~~ik~sGl~GrGGAGFPT~~Kw~~~~~-~~~~~~~li~Na 93 (438)
T 3i9v_1 15 RTLYAHVGKEGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPK-DDGKQHYLICNA 93 (438)
T ss_dssp CCSTTSTTSTTTTSHHHHHHTTCTHHHHHHHHSSCHHHHHHHHHTTTCBCTTTTCCBHHHHHTTSCS-SCSCCCEEEEEC
T ss_pred cchhhcCCCCCccCHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHcCCcCCCCCCCchHHHHhcccc-cCCCCCEEEEEc
Confidence 35566677666 49999999999999999997 9999999999999999999999999999998765 246789999999
Q ss_pred cCCCCcchhhhHHhhcChHHHHHHHHHHHHhhCCCEEEEEEcCCCHHHHHHHHHHHHHHHHcCccCccCCCCCCceeEEE
Q 011433 141 DESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHI 220 (486)
Q Consensus 141 ~E~EP~~~~D~~lm~~~p~~vieG~~i~~~a~gA~~~~I~I~~~~~~a~~~l~~Ai~ea~~~g~lg~~~~g~g~~~~i~V 220 (486)
+|||||+|+|++||+++||+|||||.|+++++||+++|||||+||++++++|++||++++++||||+||||++|+++|+|
T Consensus 94 ~E~EPg~~~Dr~lm~~~p~~vieG~~i~~~a~ga~~~~I~ir~e~~~ai~~l~~Ai~~a~~~g~lg~~i~gs~~~~~i~v 173 (438)
T 3i9v_1 94 DESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHV 173 (438)
T ss_dssp CCCSTTCCSHHHHHHHCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTSSBTTGGGSSCCBEEEE
T ss_pred cCCCccchhhHHHHHHCHHHHHHHHHHHHHHhCCCEEEEEEccCcHHHHHHHHHHHHHHHHcCCCcccccCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCcCcCccHHHHHHHHcCCCCCCCCCCCCCcccCCcCCCceeecHHHHHHHHHHHHcCchhhhhcCCCCCCCcEEEE
Q 011433 221 HYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKNNSGTKLFC 300 (486)
Q Consensus 221 ~~~~~~Yp~GeE~aLi~sl~G~~~~pr~kpp~pa~~G~~g~PTvV~NVET~a~v~~iv~~G~~~~~~~G~~~~~gtk~vt 300 (486)
+.++++|||||||+||++||||+++||.|||+|+++|+||+||+||||||+++|++|+++|.+||+++|+++++|||+||
T Consensus 174 ~~~~g~Yp~GeEtaLi~sleGk~~~Pr~~Pp~Pa~~Gl~g~PtvV~NVeTla~v~~iv~~G~~~~~~~G~~~~~gtk~~t 253 (438)
T 3i9v_1 174 HRGAGAYICGEETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLYQ 253 (438)
T ss_dssp EECCSCGGGGSHHHHHHHHTTSCCCCCCCSSCTTTSCGGGSCEEEEEHHHHHTHHHHHHSCHHHHHTBBCSSSBSEEEEE
T ss_pred EEcCCcCCCChHHHHHHHHhCCccCCCCCCCCchhcCCcCCceEEECHHHHHHHHHHHHhCcHHHHhcCCCCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCcc--ccccccccccChhHHhhhccccccceEE
Q 011433 301 VSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLL--PKHICDDVLMDYDALKAVQSGLGTAAVI 378 (486)
Q Consensus 301 VsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~--~~~~~~d~~~d~d~l~~~g~~~Gtg~II 378 (486)
|||+|++|+|||||+|||++|||+++|||+. .++++||+||+|+||| +.+.+ |+++|||++.++|+++|||+|+
T Consensus 254 vsG~V~~pg~~evp~Gt~l~eli~~~~GG~~---~~~~~vi~GG~sg~~~g~~~~~l-d~p~d~~~l~~~gs~~Gtggii 329 (438)
T 3i9v_1 254 ISGPVKRPGVYELPMGTTFRELIYEWAGGPL---EPIQAIIPGGSSTPPLPFTEEVL-DTPMSYEHLQAKGSMLGTGGVI 329 (438)
T ss_dssp EESSBSSCEEEEEETTCBHHHHHHTTTCCBS---SCEEEEECSSSSSCCEESCHHHH-TSBCSTTTTGGGSSCCSSSEEE
T ss_pred EeCccCCCceEEEeCCCCHHHHHHHHcCCcc---ccCCEEEECCCCCccccCCHHHc-CCccChHHHHhhccccCCceEE
Confidence 9999999999999999999999955899998 3689999999999999 55666 6999999999999999999999
Q ss_pred eecCCccHHHHHHHHhhhhccCcCCCCccchhhHH-HHHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHH
Q 011433 379 VMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTG-WLWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWP 457 (486)
Q Consensus 379 Vld~~~ciV~~~~~~~~F~~~ESCGqC~PCReG~~-~l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~p 457 (486)
|||+++|||++++++++|+++||||||+|||+||+ |+.++|++|.+|+++++|+|+|++|+++|+++|+|+|++++++|
T Consensus 330 V~~~~~~~v~~a~~~~~f~~~ESCgqCtpCr~Gt~~~l~~lL~ri~~G~g~~~dld~L~~l~~~i~~~s~C~lg~~A~~P 409 (438)
T 3i9v_1 330 LIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWP 409 (438)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHCCSCCHHHHTTTTTHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTCCSSTHHHHHHHH
T ss_pred EecCccHHHHHHHHHHHHhhhhhCCCCccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccCCCCcCcHhHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHhchhc
Q 011433 458 VQGLIRHFRPELERRIKEHAER 479 (486)
Q Consensus 458 v~s~I~~FrdEfe~hi~~~~c~ 479 (486)
|+++|+|||+||++||++++|+
T Consensus 410 v~s~l~~Fr~E~eahi~~~~C~ 431 (438)
T 3i9v_1 410 VKGSLRHFKDQYLALAREKRPV 431 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998
No 2
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=90.17 E-value=0.48 Score=48.42 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=32.8
Q ss_pred cEEEEEEccCCCceeEEEeC-CCCHHHHHHHccCCCcCC
Q 011433 296 TKLFCVSGHVNKPCTVEEEM-SIPLKELIDRHCGGVRGG 333 (486)
Q Consensus 296 tk~vtVsG~V~~Pg~~evpi-Gtpl~eli~~~~GG~~~g 333 (486)
+..|+|.|.|++||.|.+.- +++|-|.|. .+||+...
T Consensus 150 ~~~V~V~GeV~~PG~y~l~~~~~tl~~ai~-~AGG~t~~ 187 (359)
T 2j58_A 150 SQKVYVTGEVANSGKQAITNIPLTVMDAIN-AAGGLAAD 187 (359)
T ss_dssp SCEEEEEESBSSCEEEECCSSCCBHHHHHH-HTTSBCTT
T ss_pred ceEEEEEceecCCeEEEeCCCCCcHHHHHH-HcCCCCcc
Confidence 35789999999999999998 999999998 69998753
No 3
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=80.79 E-value=1.2 Score=44.21 Aligned_cols=77 Identities=12% Similarity=0.060 Sum_probs=50.3
Q ss_pred hhccCcCCCCccchhhHHHH-------------HHHHHHHHcCCC--CHHhHHHHHH---HHHHhccCCCCCCCccchHH
Q 011433 396 FYKHESCGQCTPCREGTGWL-------------WMIMERLKVGNA--KLEEIDMLQE---VTKQIEGHTICALGDAAAWP 457 (486)
Q Consensus 396 F~~~ESCGqC~PCReG~~~l-------------~~iL~ri~~G~~--~~~Dld~L~e---la~~i~~~s~C~lg~~a~~p 457 (486)
+..-..|.+|+-|...||.. ..+++.+.++.. +.+.++.+.+ +-.+. .|..|...|+..++
T Consensus 176 ~~~~~~CI~CG~C~~aCP~~~~~~~~~lGP~~li~a~r~~~d~rd~~~~erl~~l~~~~~l~~C~-~Cg~C~~vCP~gI~ 254 (282)
T 3vr8_B 176 LDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCH-TIMNCTKTCPKHLN 254 (282)
T ss_pred HHhhhhCcccCcCcccCCceeccCCcCCCHHHHHHHHHHHhCCcccchHHHHHHHhhcCCcccCh-hhCCccccCcCCCC
Confidence 33446799999999999832 233344444332 2333433321 22333 58889999999999
Q ss_pred HHHHHHhhHHHHHHHH
Q 011433 458 VQGLIRHFRPELERRI 473 (486)
Q Consensus 458 v~s~I~~FrdEfe~hi 473 (486)
+..+|...|..+.+.-
T Consensus 255 ~~~~I~~lR~~l~~~~ 270 (282)
T 3vr8_B 255 PARAIGEIKMLLTKMK 270 (282)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998776554
No 4
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=70.99 E-value=3.2 Score=42.29 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=34.7
Q ss_pred cEEEEEEccCCCceeEEEe-CCCCHHHHHHHccCCCcCCCCcccEEe
Q 011433 296 TKLFCVSGHVNKPCTVEEE-MSIPLKELIDRHCGGVRGGWDNLLAVI 341 (486)
Q Consensus 296 tk~vtVsG~V~~Pg~~evp-iGtpl~eli~~~~GG~~~g~~~~~~vi 341 (486)
...|+|.|.|++|+.|+++ -++++.|+|. .+||+.....+.+.|+
T Consensus 234 ~~~v~V~GeV~~pg~~~l~~~~~tl~eal~-~AGGi~~~~A~~~~I~ 279 (359)
T 2j58_A 234 DLKVFVMGEVGKQSTLKMDRSGMTLAEALG-NAEGISQEMSDATGIF 279 (359)
T ss_dssp GCEEEEEESBSSCEEEECBTTBCBHHHHHH-HTTCBCTTTEEEEEEE
T ss_pred eeeEEeeccccCcceEeecCCCCCHHHHHH-hCCCCCcccCCcceEE
Confidence 3458999999999999996 6999999998 6899976212334444
No 5
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=63.04 E-value=1.5 Score=42.07 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=43.6
Q ss_pred hhccCcCCCCccchhhHHHHHH----------H---HHHHHcCCCC--HHhHHHHH---HHHHHhccCCCCCCCccchHH
Q 011433 396 FYKHESCGQCTPCREGTGWLWM----------I---MERLKVGNAK--LEEIDMLQ---EVTKQIEGHTICALGDAAAWP 457 (486)
Q Consensus 396 F~~~ESCGqC~PCReG~~~l~~----------i---L~ri~~G~~~--~~Dld~L~---ela~~i~~~s~C~lg~~a~~p 457 (486)
+.....|.+|+-|...||.... + ++.+.++... .+.++.+. .+..++ .|+.|...|+...+
T Consensus 152 ~~~~~~Ci~CG~C~~~CP~~~~~~~~~lgP~~~~~~~r~~~~~r~~~~~~r~~~~~~~~~~~~C~-~Cg~C~~~CP~~i~ 230 (252)
T 2h88_B 152 LDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCH-TIMNCTRTCPKGLN 230 (252)
T ss_dssp TTTTTTCCCCCTTGGGCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCC-CCCHHHHHCTTCCC
T ss_pred hHhHHhchhhCcchhhCCCCccCCCCcCCHHHHHHHHHHhhCCcccchHHHHHHHhcccCCCcCc-cccchhhhcCCCCC
Confidence 4456799999999999996431 1 1122233221 11112111 111222 45566666777888
Q ss_pred HHHHHHhhHHHHHHH
Q 011433 458 VQGLIRHFRPELERR 472 (486)
Q Consensus 458 v~s~I~~FrdEfe~h 472 (486)
+...|...|.++..+
T Consensus 231 ~~~~i~~lr~~~~~~ 245 (252)
T 2h88_B 231 PGKAIAEIKKMMATY 245 (252)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHc
Confidence 889999888776543
No 6
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=50.72 E-value=17 Score=34.72 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=37.0
Q ss_pred cEEEEEEccCCCceeEEEeCCCCHHHHHHHccCCCcCCC-CcccEEecCC
Q 011433 296 TKLFCVSGHVNKPCTVEEEMSIPLKELIDRHCGGVRGGW-DNLLAVIPGG 344 (486)
Q Consensus 296 tk~vtVsG~V~~Pg~~evpiGtpl~eli~~~~GG~~~g~-~~~~~vi~GG 344 (486)
...|+|.|.|..|+.+.-.-|.+++|-|+ .+||+.... ...--|.+.|
T Consensus 127 ~~tV~V~G~V~~p~~v~~~~g~~~~dYi~-~agg~~~Ad~~~v~VI~~nG 175 (236)
T 3p42_A 127 PVTITLLGAVSGAGQLPWLAGRSVTDYLQ-DHPRLAGADKNNVMVITPEG 175 (236)
T ss_dssp CSEEEEEESBTTCEEEECCTTCCHHHHHT-TSCBCTTBCSSEEEEECTTS
T ss_pred CCEEEEEeecCCcCeEeecCCCCHHHHHH-hCCCCCCCCCccEEEEeCCC
Confidence 45699999999999999999999999998 689986431 1223344666
No 7
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=49.53 E-value=4.6 Score=38.23 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=40.5
Q ss_pred hccCcCCCCccchhhHHHHHH---------HHH--H-HHcCCCCHHhHHHHHHH--HHHhccCC---CCCCCccchHHHH
Q 011433 397 YKHESCGQCTPCREGTGWLWM---------IME--R-LKVGNAKLEEIDMLQEV--TKQIEGHT---ICALGDAAAWPVQ 459 (486)
Q Consensus 397 ~~~ESCGqC~PCReG~~~l~~---------iL~--r-i~~G~~~~~Dld~L~el--a~~i~~~s---~C~lg~~a~~pv~ 459 (486)
.....|++|+-|...||.-.- ++. + +..++.....-+.+..+ ...+..|. .|...|+...++.
T Consensus 146 ~~~~~Ci~Cg~C~~~CP~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~i~~~ 225 (241)
T 2bs2_B 146 FELDRCIECGCCIAACGTKIMREDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQ 225 (241)
T ss_dssp HHHHTCCCCCHHHHTCHHHHHCTTCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHCSTTTGGGCCCCCHHHHHCTTCCCHH
T ss_pred hhhhhhhccCcCcccCCCCccCCCCCCHHHHHHHHHHhhCccccccHHHHHHHHhcccCcccCcccChhhHhcCCCCChH
Confidence 345789999999999996431 111 1 11220111111222222 12233444 5666677778888
Q ss_pred HHHHhhHHHH
Q 011433 460 GLIRHFRPEL 469 (486)
Q Consensus 460 s~I~~FrdEf 469 (486)
..|...|.++
T Consensus 226 ~~i~~lr~~~ 235 (241)
T 2bs2_B 226 SKIAYLRRKM 235 (241)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8998888765
No 8
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=48.79 E-value=3.2 Score=39.30 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=43.2
Q ss_pred hhccCcCCCCccchhhHHHHHH--------HHH---HHH-cCC--CCHHhHHHHH---HHHHHhccCCCCCCCccchHHH
Q 011433 396 FYKHESCGQCTPCREGTGWLWM--------IME---RLK-VGN--AKLEEIDMLQ---EVTKQIEGHTICALGDAAAWPV 458 (486)
Q Consensus 396 F~~~ESCGqC~PCReG~~~l~~--------iL~---ri~-~G~--~~~~Dld~L~---ela~~i~~~s~C~lg~~a~~pv 458 (486)
++..+.|.+|+-|...||...- .+. +.. +++ +....+..+. ....++ .|+.|...|+...++
T Consensus 142 ~~~~~~Ci~Cg~C~~~CP~~~~~~~~~gP~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~-~Cg~C~~vCP~gi~~ 220 (243)
T 1kf6_B 142 YHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCT-FVGYCSEVCPKHVDP 220 (243)
T ss_dssp TGGGGCCCCCCHHHHHCHHHHHCTTSCCHHHHHHHHHHHTCTTCCCTHHHHHHHHSTTTGGGCC-CCCHHHHHCTTCCCH
T ss_pred hhhhhhccccCccccccCCCcccCCCCCHHHHHHHHHHhhCccccchHHHHHHHhccCCcccCc-ccCCcchhCCCCCCH
Confidence 4567899999999999996431 111 111 211 1111222221 111222 355566667778888
Q ss_pred HHHHHhhHHHHHHH
Q 011433 459 QGLIRHFRPELERR 472 (486)
Q Consensus 459 ~s~I~~FrdEfe~h 472 (486)
..+|...|.++..+
T Consensus 221 ~~~i~~~r~~~~~~ 234 (243)
T 1kf6_B 221 AAAIQQGKVESSKD 234 (243)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 88998888776543
No 9
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=45.86 E-value=7.5 Score=36.62 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=40.8
Q ss_pred hhccCcCCCCccchhhHHHHHH----------HH--HHHH-cCCCCHHhHHHHH------HHHHHhccCCCCCCCccchH
Q 011433 396 FYKHESCGQCTPCREGTGWLWM----------IM--ERLK-VGNAKLEEIDMLQ------EVTKQIEGHTICALGDAAAW 456 (486)
Q Consensus 396 F~~~ESCGqC~PCReG~~~l~~----------iL--~ri~-~G~~~~~Dld~L~------ela~~i~~~s~C~lg~~a~~ 456 (486)
++....|.+|+.|...||.... +. .+.. .++... +-+.+. ....++ .|+.|...|+...
T Consensus 143 ~~~~~~Ci~Cg~C~~~CP~~~~~~~~~~~p~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~C~-~Cg~C~~vCP~gi 220 (238)
T 2wdq_B 143 LDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTE-TDSRLDGLSDAFSVFRCH-SIMNCVSVCPKGL 220 (238)
T ss_dssp TTTTTTCCCCCTTGGGCHHHHHCTTTSCCHHHHHHHHHHHTCTTCCC-HHHHHHTTCSTTTTTTCC-CCCHHHHHCTTCC
T ss_pred HhccccccccCCchhhCcCCccCCCCCCCHHHHHHHHHHHhCCcccc-hHHHHHHHhccCCCCcCc-ccchhhhhcCCCC
Confidence 3456899999999999996431 11 1111 221111 011222 111222 3555656677888
Q ss_pred HHHHHHHhhHHHHH
Q 011433 457 PVQGLIRHFRPELE 470 (486)
Q Consensus 457 pv~s~I~~FrdEfe 470 (486)
++..+|...|.++.
T Consensus 221 ~~~~~i~~lr~~~~ 234 (238)
T 2wdq_B 221 NPTRAIGHIKSMLL 234 (238)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888887653
No 10
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=33.94 E-value=12 Score=32.99 Aligned_cols=39 Identities=0% Similarity=0.124 Sum_probs=26.5
Q ss_pred CCccchhhHHHHHHHHHHHHcCC-CC--HHhHHHHHHHHHHhc
Q 011433 404 QCTPCREGTGWLWMIMERLKVGN-AK--LEEIDMLQEVTKQIE 443 (486)
Q Consensus 404 qC~PCReG~~~l~~iL~ri~~G~-~~--~~Dld~L~ela~~i~ 443 (486)
||+||+...|.+.++.+.+. |+ -+ .-|.|.-.+++....
T Consensus 47 rCgpCk~iaPvleela~e~~-g~~v~~~KVdvDe~~~lA~~yg 88 (140)
T 2qgv_A 47 RTPEVSDNPVMIGELLHEFP-DYTWQVAIADLEQSEAIGDRFG 88 (140)
T ss_dssp TCTTTTHHHHHHHHHHTTCT-TSCCEEEECCHHHHHHHHHHHT
T ss_pred cCCcHHHHHhHHHHHHHHcC-CCeEEEEEEECCCCHHHHHHcC
Confidence 59999999998887766542 23 11 236777788886653
No 11
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=27.37 E-value=12 Score=42.26 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=43.3
Q ss_pred cCcCCCCccchhhHHH---HHHHHHHHHcCCCCHHhHHHHHHHHHHhccCCCCCCCccchHHHHHHHHhhHHHHHH
Q 011433 399 HESCGQCTPCREGTGW---LWMIMERLKVGNAKLEEIDMLQEVTKQIEGHTICALGDAAAWPVQGLIRHFRPELER 471 (486)
Q Consensus 399 ~ESCGqC~PCReG~~~---l~~iL~ri~~G~~~~~Dld~L~ela~~i~~~s~C~lg~~a~~pv~s~I~~FrdEfe~ 471 (486)
.+.|.+|+.|...||. +.++++.+..|.- . .+....+.-..|+.|.-.|+...++...++..+..+..
T Consensus 414 ~~~Ci~CG~C~~~CP~~~~~~~il~~~~~G~~--~---~~~~~~~~Ci~Cg~C~~vCP~ga~~~~~i~~~r~~l~~ 484 (807)
T 3cf4_A 414 VAKCADCGACLLACPEEIDIPEAMGFAKKGDF--S---YFEEIHDTCIGCRRCEQVCKKEIPILNVIEKIAQKQIA 484 (807)
T ss_dssp HHHCCCCCHHHHHCTTCCCHHHHHHHHHTTCT--H---HHHHHHHHCCCCCHHHHHCTTCCCHHHHHHHHTHHHHH
T ss_pred HHhCCCCCchhhhCCCCCchHHHHHHHHcCCh--h---hhhhchhhccchhhHHHhCCCCCChHHHHHHHHHHHHh
Confidence 4689999999998885 2345555545432 1 12222222236888888888877777777777766543
No 12
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=23.29 E-value=89 Score=24.24 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=27.8
Q ss_pred ceeEEEeCCCCHHHHHHHccCCCcCCCCcccEEecCCCCCCcccccc
Q 011433 308 PCTVEEEMSIPLKELIDRHCGGVRGGWDNLLAVIPGGSSVPLLPKHI 354 (486)
Q Consensus 308 Pg~~evpiGtpl~eli~~~~GG~~~g~~~~~~vi~GG~s~p~~~~~~ 354 (486)
.+.+++|-|+|++|||++ -| +.. +.. .|..+| -+++.+.
T Consensus 12 ~~~~ev~~g~Tv~dLL~~-Lg-l~~--~~V-vV~vNG---~~v~~d~ 50 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVRA-VD-LSP--HEV-TVLVDG---RPVPEDQ 50 (74)
T ss_dssp EEEEECSTTCSHHHHHHT-TC-CCS--SCC-CEECCC---CCCCTTS
T ss_pred ceeEEcCCCCcHHHHHHH-cC-CCc--ceE-EEEECC---EECCHHH
Confidence 445899999999999995 44 554 244 788899 5555543
Done!