BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011434
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 158/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 8 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 127 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 182
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++AA+A LA +T+ W +L T Y LK +L L L + +IR
Sbjct: 183 SVIAAAAFHLALYTVTGQS--WPESLIRKTGYTLESLKPMLLDLHQTYLKAPQHAQQSIR 240
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 241 EKYKNSKYHGVSLLNPPE 258
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 158/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 8 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 182
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++AA+A LA +T+ W +L T Y LK +L L L + +IR
Sbjct: 183 SVIAAAAFHLALYTVTGQS--WPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIR 240
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 241 EKYKNSKYHGVSLLNPPE 258
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 159/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 8 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 182
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++AA+A LA +T+ + W +L T Y LK +L L L + +IR
Sbjct: 183 SVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIR 240
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 241 EKYKNSKYHGVSLLNPPE 258
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 159/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 8 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 182
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++AA+A LA +T+ + W +L T Y LK +L L L + +IR
Sbjct: 183 SVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIR 240
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 241 EKYKNSKYHGVSLLNPPE 258
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 159/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 8 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 182
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++AA+A LA +T+ + W +L T Y LK +L L L + +IR
Sbjct: 183 SVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIR 240
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 241 EKYKNSKYHGVSLLNPPE 258
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 159/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 8 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 182
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++AA+A LA +T+ + W +L T Y LK +L L L + +IR
Sbjct: 183 SVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIR 240
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 241 EKYKNSKYHGVSLLNPPE 258
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 159/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 8 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 127 LVLKVLAFDLAAPTINQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 182
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++AA+A LA +T+ + W +L T Y LK +L L L + +IR
Sbjct: 183 SVIAAAAFHLALYTV--TGQSWPESLVQKTGYTLETLKPCLLDLHQTYLRAPQHAQQSIR 240
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 241 EKYKNSKYHGVSLLNPPE 258
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 159/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 8 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 127 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 182
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++AA+A LA +T+ + W +L T Y LK ++ L L + +IR
Sbjct: 183 SVIAAAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIR 240
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 241 EKYKNSKYHGVSLLNPPE 258
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 157/258 (60%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM++ Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 7 YQEDIHTYLREMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 65
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TY++++VL+ME
Sbjct: 66 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEH 125
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 126 LVLKVLAFDLAAPTVNQFLTQYFLHLQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 181
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
SL+A +A LA +T+ W +L T Y LK ++ L L + +IR
Sbjct: 182 SLIAGAAFHLALYTVTGQS--WPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIR 239
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 240 EKYKHSKYHSVSLLNPPE 257
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 157/258 (60%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM++ Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 4 YQEDIHTYLREMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TY++++VL+ME
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEH 122
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 123 LVLKVLAFDLAAPTVNQFLTQYFLHLQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 178
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
SL+A +A LA +T+ W +L T Y LK ++ L L + +IR
Sbjct: 179 SLIAGAAFHLALYTVTGQS--WPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIR 236
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 237 EKYKHSKYHSVSLLNPPE 254
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 157/258 (60%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM++ Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 4 YQEDIHTYLREMEVKCKPKVGYMKR-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TY++++VL+ME
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEH 122
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 123 LVLKVLAFDLAAPTVNQFLTQYFLHLQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 178
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
SL+A +A LA +T+ W +L T Y LK ++ L L + +IR
Sbjct: 179 SLIAGAAFHLALYTVTGQS--WPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIR 236
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 237 EKYKHSKYHSVSLLNPPE 254
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 157/258 (60%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 11 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 69
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 70 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 129
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 130 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 185
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++A +A LA +T+ W +L T Y LK ++ L L + +IR
Sbjct: 186 SVIAGAAFHLALYTVTGQS--WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIR 243
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 244 EKYKNSKYHGVSLLNPPE 261
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 191 bits (485), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 157/258 (60%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 4 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 122
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 123 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 178
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++A +A LA +T+ W +L T Y LK ++ L L + +IR
Sbjct: 179 SVIAGAAFHLALYTVTGQS--WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIR 236
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 237 EKYKNSKYHGVSLLNPPE 254
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 191 bits (484), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 157/258 (60%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 5 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 63
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 64 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 123
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 124 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 179
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++A +A LA +T+ W +L T Y LK ++ L L + +IR
Sbjct: 180 SVIAGAAFHLALYTVTGQS--WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIR 237
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 238 EKYKNSKYHGVSLLNPPE 255
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 191 bits (484), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 158/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 6 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 64
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 65 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 124
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 125 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 180
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++A +A LA +T+ + W +L T Y LK ++ L L + +IR
Sbjct: 181 SVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIR 238
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 239 EKYKNSKYHGVSLLNPPE 256
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 157/258 (60%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 6 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 64
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 65 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 124
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 125 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 180
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++A +A LA +T+ W +L T Y LK ++ L L + +IR
Sbjct: 181 SVIAGAAFHLALYTVTGQS--WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIR 238
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 239 EKYKNSKYHGVSLLNPPE 256
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 158/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 7 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 65
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 66 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 125
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 126 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 181
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++A +A LA +T+ + W +L T Y LK ++ L L + +IR
Sbjct: 182 SVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIR 239
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 240 EKYKNSKYHGVSLLNPPE 257
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 158/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 2 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 60
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 61 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 120
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 121 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 176
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++A +A LA +T+ + W +L T Y LK ++ L L + +IR
Sbjct: 177 SVIAGAAFHLALYTV--TGQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIR 234
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 235 EKYKNSKYHGVSLLNPPE 252
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 157/258 (60%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 4 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 62
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 63 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 122
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 123 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 178
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++A +A LA +T+ W +L T Y LK ++ L L + +IR
Sbjct: 179 SVIAGAAFHLALYTVTGQS--WPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIR 236
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 237 EKYKNSKYHGVSLLNPPE 254
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 158/258 (61%), Gaps = 8/258 (3%)
Query: 222 YAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTV 281
Y DI+ +R E+ +P YM+K Q DIT +MR IL+DWLVEV EEYKL +TL+L V
Sbjct: 8 YHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 66
Query: 282 NLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMES 341
N IDRFLS + + +LQLVG ML+ASK+EEI P + EF +ITD+TYT+++VL+ME
Sbjct: 67 NYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEH 126
Query: 342 QVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYS-FLRFRP 400
VL L F L+ PT FL ++ Q + +C ++E LA +L EL+L++ +L++ P
Sbjct: 127 LVLKVLTFDLAAPTVNQFLTQYFLHQQPA---NC-KVESLAMFLGELSLIDADPYLKYLP 182
Query: 401 SLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAIR 460
S++AA+A LA +T+ + W +L T Y K +L L L + +IR
Sbjct: 183 SVIAAAAFHLALYTV--TGQSWPESLIRKTGYTLETSKPCMLDLHQTYLKAPQHAQQSIR 240
Query: 461 EKYRQEKFKCVATMTPTE 478
EKY+ K+ V+ + P E
Sbjct: 241 EKYKNSKYHGVSLLNPPE 258
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/258 (40%), Positives = 152/258 (58%), Gaps = 11/258 (4%)
Query: 219 CSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLY 278
CS Y DIY +R E +Q Y+ L +++T NMR ILIDWLV+V +++L+ +T+Y
Sbjct: 1 CSEYVKDIYAYLRQLEEEQAVRPKYL--LGREVTGNMRAILIDWLVQVQMKFRLLQETMY 58
Query: 279 LTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLK 338
+TV++IDRF+ N +PK+ LQLVGVT M IASKYEE+ P + +F F+TDNTYT+ ++ +
Sbjct: 59 MTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQ 118
Query: 339 MESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRF 398
ME ++L L+F L P FLRR + + +E LA YL ELT+L+Y + F
Sbjct: 119 MEMKILRALNFGLGRPLPLHFLRRASKIGEVD-----VEQHTLAKYLMELTMLDYDMVHF 173
Query: 399 RPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTV--LALEDLQLNTDGCSL 456
PS +AA A LA L+ E W TL+HY SY L + LA + +N
Sbjct: 174 PPSQIAAGAFCLALKILDNGE--WTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKH 231
Query: 457 NAIREKYRQEKFKCVATM 474
++ KY K ++T+
Sbjct: 232 MTVKNKYATSKHAKISTL 249
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/261 (40%), Positives = 154/261 (59%), Gaps = 15/261 (5%)
Query: 218 VCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTL 277
+ S Y DIY +R E Q Y+ L +++T NMR ILIDWLV+V +++L+ +T+
Sbjct: 2 LSSEYVKDIYAYLRQLEAAQAVRPKYL--LGREVTGNMRAILIDWLVQVQMKFRLLQETM 59
Query: 278 YLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVL 337
Y+TV++IDRF+ N +PK+ LQLVGVT M IASKYEE+ P + +F F+TDNTYT+ ++
Sbjct: 60 YMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIR 119
Query: 338 KMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELE--FLANYLAELTLLEYSF 395
+ME ++L L+F L P FLRR + K+ +++E LA YL ELT+L+Y
Sbjct: 120 QMEMKILRALNFGLGRPLPLHFLRR-------ASKIGEVDVEQHTLAKYLMELTMLDYDM 172
Query: 396 LRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTV--LALEDLQLNTDG 453
+ F PS +AA A LA L+ E W TL+HY SY L + LA + +N
Sbjct: 173 VHFPPSQIAAGAFSLALKILDNGE--WTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGL 230
Query: 454 CSLNAIREKYRQEKFKCVATM 474
++ KY K ++T+
Sbjct: 231 TKHMTVKNKYATSKHAKISTL 251
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 19/172 (11%)
Query: 251 ITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLS-QNHIPKQRLQLVGVTCMLIA 309
+ P MR IL+DWL+EV E YKL +T YL + DR+++ Q ++ K LQL+G++ + IA
Sbjct: 45 LQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIA 104
Query: 310 SKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQA 369
+K EEI P+L +F ++TD + +E+L ME ++ L ++LS T S+L ++Q A
Sbjct: 105 AKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYL 164
Query: 370 S--HKVSCLELEFLANY----------LAELTLLEYSFLRFRPSLVAASAVF 409
+ H+V L Y L +L +L+ L F ++AASA++
Sbjct: 165 NDLHEV------LLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALY 210
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 15/248 (6%)
Query: 224 PDIYNNIRVTE----LDQR--PSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTL 277
P + + RV + L++R P +Y + +Q++I P+MR +L W++EV EE + +
Sbjct: 33 PRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVF 92
Query: 278 YLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVL 337
L +N +DR+LS K +LQL+G CML+ASK E +E+ C TD+ + ++
Sbjct: 93 PLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLR 152
Query: 338 KMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLR 397
E VL L + L+ FL + L + +LA L +Y+F
Sbjct: 153 DWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLA-LCATDYTFAM 211
Query: 398 FRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLN 457
+ PS++A ++ A L + E +E+ C E ++
Sbjct: 212 YPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIE--------A 263
Query: 458 AIREKYRQ 465
A+RE R+
Sbjct: 264 ALRESLRE 271
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 78/126 (61%)
Query: 239 PSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRL 298
PS +Y + +Q+++ P+MR I+ W++EV EE K + L +N +DRFLS + K RL
Sbjct: 26 PSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRL 85
Query: 299 QLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKS 358
QL+G TCM +ASK +E I E+ C TDN+ EE+L+ME ++N L + L+ T
Sbjct: 86 QLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHD 145
Query: 359 FLRRFI 364
F+ F+
Sbjct: 146 FIEHFL 151
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 78/126 (61%)
Query: 239 PSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRL 298
PS +Y + +Q+++ P+MR I+ W++EV EE K + L +N +DRFLS + K RL
Sbjct: 40 PSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRL 99
Query: 299 QLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKS 358
QL+G TCM +ASK +E I E+ C TDN+ EE+L+ME ++N L + L+ T
Sbjct: 100 QLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHD 159
Query: 359 FLRRFI 364
F+ F+
Sbjct: 160 FIEHFL 165
>pdb|1JOW|A Chain A, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|A Chain A, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|A Chain A, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 254
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 97/208 (46%), Gaps = 2/208 (0%)
Query: 224 PDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNL 283
P + NN+++ EL P T + ++Q ++T + R IL+ W+ + E ++L L+V++
Sbjct: 21 PRVLNNLKLREL-LLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSI 79
Query: 284 IDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQV 343
+DR+L + K+ LQ +G C+LI SK + + + +++ + +T E++ E +
Sbjct: 80 LDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDI 139
Query: 344 LNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLV 403
L L + FL A + + E + + + L++ + P L+
Sbjct: 140 LEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICK-ALIQPNIALLSPGLI 198
Query: 404 AASAVFLAKWTLNQSEHPWNSTLEHYTS 431
A + T N + PW LE +S
Sbjct: 199 CAGGLLTTIETDNTNCRPWTCYLEDLSS 226
>pdb|1BU2|A Chain A, X-Ray Structure Of A Viral Cyclin From Herpesvirus Saimiri
Length = 229
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 2/206 (0%)
Query: 226 IYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLID 285
+ NN+++ EL P T + ++Q ++T + R IL+ W+ + E ++L L+V+++D
Sbjct: 2 VLNNLKLREL-LLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILD 60
Query: 286 RFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLN 345
R+L + K+ LQ +G C+LI SK + + + +++ + +T E++ E +L
Sbjct: 61 RYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILE 120
Query: 346 FLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAA 405
L + FL A + + E + + + L++ + P L+ A
Sbjct: 121 ALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICK-ALIQPNIALLSPGLICA 179
Query: 406 SAVFLAKWTLNQSEHPWNSTLEHYTS 431
+ T N + PW LE +S
Sbjct: 180 GGLLTTIETDNTNCRPWTCYLEDLSS 205
>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 257
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 7/165 (4%)
Query: 208 NIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVS 267
N S L DP +C I+ NI E S + QQ +T +MR +L W+ V
Sbjct: 6 NPPSGLLDPTLCE---DRIFYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVC 62
Query: 268 EEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFIT 327
+EY L P+ + L +NL+DR L + K+ Q G C+L+ASK + C+
Sbjct: 63 QEYNLEPNVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAA 122
Query: 328 DNTYTREEVLKMESQVLNFLHFQ----LSVPTTKSFLRRFIQAAQ 368
++++R+E++ E ++L L ++ L+ T L + + +Q
Sbjct: 123 ADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQ 167
>pdb|1F5Q|B Chain B, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|D Chain D, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
Length = 252
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 43/103 (41%)
Query: 247 LQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCM 306
+ Q T R +L W+ V ++ + + L V L+D I ++ Q +
Sbjct: 40 VDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRIDRENYQSTAAVAL 99
Query: 307 LIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHF 349
IA K + + + ++ T +++L +E + L+ L +
Sbjct: 100 HIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSW 142
>pdb|2Z5B|B Chain B, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 179
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 36/88 (40%)
Query: 24 PTSRITRAKAKALGTSGGIFPSSKPTFKPDHKHVLRMNSKRGASDENKASVTATSGIQHK 83
P I A LG +GG + + F DH ++ +K G S + K V +
Sbjct: 61 PILDINVPLAGNLGNTGGDYDDEEEEFVRDHLSDYQVVTKLGDSADPKVPVVCVQIAELY 120
Query: 84 RRAVLKDVTNICENSHRNYSSFAKIQTR 111
RR +L +V+ + +S + ++
Sbjct: 121 RRVILPEVSGTMAQDNMQFSLLISMSSK 148
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 31/169 (18%)
Query: 263 LVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEE-------- 314
+ +V L DTL + RF + + + G C+ +A K EE
Sbjct: 48 IFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDI 107
Query: 315 IIAPR--LEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHK 372
I R L + F +EEV+ +E +L + F L V FL ++ + +
Sbjct: 108 IKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGD-- 165
Query: 373 VSCLELEFLANYLAELTLLEYSF----------LRFRPSLVAASAVFLA 411
N + +L + ++F L++ P ++A + ++LA
Sbjct: 166 ---------KNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLA 205
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 191 EENNLCEELQSNGPSIVNIDSNLEDPQVCSLYAPDIYNNIRVTELD 236
+E N ++ +V +DS+ + SLY P + NN RV +D
Sbjct: 159 KEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMD 204
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 263 LVEVSEEYKLVPDTLYLTVNLIDRF-LSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLE 321
L + S++Y+ + +TL + I+ F + IP+ L L +Y + RL
Sbjct: 638 LKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESEL--------LEVDRY---LLNRLR 686
Query: 322 EFCFITDNTYTREEVLKMESQVLNFLHFQLS 352
EF T N Y + L + +V NF++ +LS
Sbjct: 687 EFTASTINNYENFDYLNIYQEVQNFINVELS 717
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,452,048
Number of Sequences: 62578
Number of extensions: 520040
Number of successful extensions: 1284
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 39
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)