Query 011434
Match_columns 486
No_of_seqs 256 out of 1829
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 1.1E-54 3.6E-59 429.9 24.4 256 219-481 3-259 (260)
2 2b9r_A Human cyclin B1; cell c 100.0 5.6E-54 1.9E-58 427.0 20.3 254 217-479 1-256 (269)
3 1g3n_C V-cyclin; cyclin-depend 100.0 1.4E-49 4.9E-54 392.5 24.1 246 208-457 6-255 (257)
4 2f2c_A Cyclin homolog, V-cycli 100.0 9.7E-49 3.3E-53 385.9 24.8 239 209-451 8-249 (254)
5 1w98_B Cyclin E, G1/S-specific 100.0 3E-47 1E-51 381.4 25.0 253 212-475 7-269 (283)
6 3g33_B CCND3 protein; Ser/Thr 100.0 1.7E-47 5.7E-52 387.4 23.2 236 212-451 29-268 (306)
7 1f5q_B Gamma herpesvirus cycli 100.0 1E-47 3.5E-52 379.2 15.6 233 207-452 8-244 (252)
8 2w96_A G1/S-specific cyclin-D1 100.0 1.3E-45 4.5E-50 366.9 22.9 239 209-451 13-258 (271)
9 2i53_A Cyclin K; cell cycle, t 100.0 5.4E-36 1.8E-40 294.7 13.7 211 240-452 25-253 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 2.3E-35 7.8E-40 290.5 16.7 214 242-464 17-253 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 7.8E-35 2.7E-39 291.7 18.7 206 253-467 40-263 (285)
12 2pk2_A Cyclin-T1, protein TAT; 100.0 1.1E-33 3.7E-38 292.0 12.2 211 243-462 25-258 (358)
13 1zp2_A RNA polymerase II holoe 100.0 3.3E-33 1.1E-37 272.0 13.7 187 256-451 28-221 (235)
14 1jkw_A Cyclin H; cell cycle, c 100.0 1.7E-31 5.8E-36 272.1 21.8 210 253-463 54-277 (323)
15 1c9b_A General transcription f 99.9 1.5E-25 5.2E-30 213.6 19.9 182 255-446 4-185 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 3.1E-21 1E-25 182.7 21.0 184 255-448 8-193 (200)
17 3k7a_M Transcription initiatio 99.7 1.3E-17 4.5E-22 171.1 8.6 182 256-447 126-319 (345)
18 4bbr_M Transcription initiatio 99.2 2.6E-11 8.8E-16 124.4 9.0 179 257-445 127-317 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.3 2.4E-06 8.2E-11 85.1 11.4 106 259-367 77-185 (293)
20 1ais_B TFB TFIIB, protein (tra 96.4 0.011 3.8E-07 54.9 9.0 88 261-351 110-197 (200)
21 1c9b_A General transcription f 93.6 0.18 6E-06 47.0 7.9 86 260-348 103-188 (207)
22 1zp2_A RNA polymerase II holoe 87.2 0.67 2.3E-05 43.9 5.4 84 261-348 136-219 (235)
23 2ivx_A Cyclin-T2; transcriptio 87.0 1.5 5E-05 42.1 7.8 87 261-347 148-238 (257)
24 2i53_A Cyclin K; cell cycle, t 85.3 1.5 5.2E-05 41.8 6.9 88 261-348 153-250 (258)
25 2pk2_A Cyclin-T1, protein TAT; 84.6 1.3 4.6E-05 45.0 6.4 87 262-348 156-246 (358)
26 3rgf_B Cyclin-C; protein kinas 81.7 1.5 5.3E-05 42.9 5.3 81 261-346 159-239 (285)
27 2b9r_A Human cyclin B1; cell c 77.4 2.6 9E-05 40.7 5.4 83 261-346 140-222 (269)
28 1g3n_C V-cyclin; cyclin-depend 77.2 6.4 0.00022 37.6 8.0 86 260-347 152-246 (257)
29 2cch_B Cyclin A2, cyclin-A; co 76.9 4.7 0.00016 38.7 7.0 85 260-347 140-226 (260)
30 4bbr_M Transcription initiatio 76.2 9.5 0.00033 38.4 9.3 69 377-447 145-213 (345)
31 2f2c_A Cyclin homolog, V-cycli 75.4 6.4 0.00022 37.6 7.5 85 261-347 154-246 (254)
32 3k7a_M Transcription initiatio 71.3 0.83 2.8E-05 46.2 0.0 55 261-315 237-291 (345)
33 3g33_B CCND3 protein; Ser/Thr 67.0 13 0.00045 36.6 7.7 88 262-351 174-269 (306)
34 1jkw_A Cyclin H; cell cycle, c 66.8 11 0.00037 37.5 7.1 90 259-348 167-260 (323)
35 3h4c_A Transcription factor TF 62.1 1.1E+02 0.0036 28.9 15.0 88 258-349 14-104 (260)
36 2w96_A G1/S-specific cyclin-D1 58.6 40 0.0014 32.2 9.3 67 379-446 78-146 (271)
37 1w98_B Cyclin E, G1/S-specific 51.7 66 0.0022 31.0 9.6 67 379-446 71-140 (283)
38 2pmi_B PHO85 cyclin PHO80, ami 45.9 72 0.0024 31.5 8.8 85 355-445 76-163 (293)
39 3m03_A ORC6, origin recognitio 32.8 1.4E+02 0.0048 24.5 7.2 78 263-345 6-89 (95)
40 1f5q_B Gamma herpesvirus cycli 31.1 1.8E+02 0.0061 27.5 8.9 63 379-442 70-134 (252)
41 2ast_A S-phase kinase-associat 30.3 91 0.0031 27.3 6.2 77 249-337 47-150 (159)
42 3m03_A ORC6, origin recognitio 26.0 1.1E+02 0.0039 25.0 5.5 51 397-449 42-92 (95)
43 3v7d_A Suppressor of kinetocho 22.7 1.1E+02 0.0039 27.2 5.4 37 299-336 120-156 (169)
44 2p1m_A SKP1-like protein 1A; F 22.4 80 0.0027 27.8 4.3 37 299-336 112-148 (160)
45 2qdj_A Retinoblastoma-associat 21.9 1.2E+02 0.004 30.0 5.7 65 263-328 6-74 (304)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=1.1e-54 Score=429.91 Aligned_cols=256 Identities=42% Similarity=0.697 Sum_probs=242.9
Q ss_pred hhchHHHHHHHHHHHHHhcCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccc
Q 011434 219 CSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRL 298 (486)
Q Consensus 219 ~seY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~l 298 (486)
|++|++|||.||+..|.++.|.++||.. |++|++.||.++||||++|+..|++.++|+++||+|||||++...+.+.++
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~-q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~l 81 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKK-QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL 81 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGG-CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhc-CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 7899999999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcccccHHHH
Q 011434 299 QLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLEL 378 (486)
Q Consensus 299 qLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~el 378 (486)
||+|+||||||||+||.++|.+.+|+.++++.|++++|.+||+.||++|+|++++|||++||.+|+..++.+ ..++
T Consensus 82 qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~----~~~~ 157 (260)
T 2cch_B 82 QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA----NCKV 157 (260)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSC----CHHH
T ss_pred hHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCC----hHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876532 2367
Q ss_pred HHHHHHHHHHHhchhc-ccccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHHHHHHhhcCCCChh
Q 011434 379 EFLANYLAELTLLEYS-FLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLN 457 (486)
Q Consensus 379 ~~lA~yLlelsL~d~~-fl~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~~l~~~~~~~~l~ 457 (486)
..+|+|++++++.|+. |+.|+||.||||||++|+..++. +.|...+.+++||+.++|.+|+..|.+++.+....++.
T Consensus 158 ~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~--~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~ 235 (260)
T 2cch_B 158 ESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG--QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQ 235 (260)
T ss_dssp HHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS--CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCC
T ss_pred HHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC--CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchH
Confidence 8899999999999999 99999999999999999999985 68999999999999999999999999998887777889
Q ss_pred hhHhhhCCcccCceeccCCCcchh
Q 011434 458 AIREKYRQEKFKCVATMTPTERVL 481 (486)
Q Consensus 458 aI~~KY~s~kf~~Vs~~~~P~~~~ 481 (486)
+|++||++++|++||.+++|+.++
T Consensus 236 ~i~~Ky~~~~~~~vs~~~~~~~~~ 259 (260)
T 2cch_B 236 SIREKYKNSKYHGVSLLNPPETLN 259 (260)
T ss_dssp HHHHHHTSGGGTTGGGSCCCSCCC
T ss_pred HHHHHHCcccccceeCCCCcccCC
Confidence 999999999999999999998763
No 2
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=5.6e-54 Score=427.03 Aligned_cols=254 Identities=39% Similarity=0.655 Sum_probs=233.6
Q ss_pred chhhchHHHHHHHHHHHHHhcCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcc
Q 011434 217 QVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQ 296 (486)
Q Consensus 217 ~~~seY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~ 296 (486)
|+|++|++|||+||+..|.++.|.++||++ | +|++.||.++++||++++..|++.++|+++||+|||||++...+.+.
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~~~~~y~~~-q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~ 78 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEAAQAVRPKYLLG-R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKK 78 (269)
T ss_dssp ------CCTTTTTHHHHHHTTCCCTTTTSS-S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCcccccC-C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHH
Confidence 589999999999999999999999999986 6 99999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcccccHH
Q 011434 297 RLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCL 376 (486)
Q Consensus 297 ~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~ 376 (486)
++||+|+||||||||+||..+|.+.+|+.++++.|++++|.+||+.||++|+|+++.|||++||++|+...+. +.
T Consensus 79 ~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~-----~~ 153 (269)
T 2b9r_A 79 MLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEV-----DV 153 (269)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCC-----CH
T ss_pred HhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCC-----CH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876432 34
Q ss_pred HHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHHHHHHhhcC--CC
Q 011434 377 ELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTD--GC 454 (486)
Q Consensus 377 el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~~l~~~~~--~~ 454 (486)
+++.+|+||+++++.++.|+.|+||.||||||++|+..++. +.|.+.|.+++||+.++|.+|+..|.+++.... ..
T Consensus 154 ~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~--~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~ 231 (269)
T 2b9r_A 154 EQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDN--GEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLT 231 (269)
T ss_dssp HHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTC--CCSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCC--CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 67889999999999999999999999999999999999986 479999999999999999999999999876543 35
Q ss_pred ChhhhHhhhCCcccCceeccCCCcc
Q 011434 455 SLNAIREKYRQEKFKCVATMTPTER 479 (486)
Q Consensus 455 ~l~aI~~KY~s~kf~~Vs~~~~P~~ 479 (486)
++.+|++||++++|++||.++.++.
T Consensus 232 ~~~ai~~Ky~~~~~~~vs~~~~~~~ 256 (269)
T 2b9r_A 232 KHMTVKNKYATSKHAKISTLPQLNS 256 (269)
T ss_dssp SCCHHHHHTTSGGGTTGGGSSCCSG
T ss_pred chHHHHHHhcchhhCcccCCCCCCh
Confidence 8899999999999999999988763
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.4e-49 Score=392.51 Aligned_cols=246 Identities=22% Similarity=0.303 Sum_probs=216.1
Q ss_pred CCCCCCCCcchhhchHHHHHHHHHHHHHhcCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhh
Q 011434 208 NIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRF 287 (486)
Q Consensus 208 did~d~~dp~~~seY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRf 287 (486)
.+|.+..||++|.+ +||| +|+..|.++.|.++||...|++|++.||.++|+||++|+..|++.++|+|+||+|||||
T Consensus 6 ~~~~~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRf 82 (257)
T 1g3n_C 6 NPPSGLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRL 82 (257)
T ss_dssp ----------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCccCCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 36678899999997 9999 99999999999999997779999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHH
Q 011434 288 LSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAA 367 (486)
Q Consensus 288 Ls~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~ 367 (486)
++...+.+.++||+|+||||||||+||.++|.+.+|++++++.|++++|++||+.||++|+|+++.|||++||++|+..+
T Consensus 83 ls~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~ 162 (257)
T 1g3n_C 83 LLIKQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKL 162 (257)
T ss_dssp TTTCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhcccccHHHHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCCC----CCCCchhhHHhcCCChhhHHHHHHH
Q 011434 368 QASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQS----EHPWNSTLEHYTSYKASELKCTVLA 443 (486)
Q Consensus 368 ~~~~~~~~~el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~~----~~~W~~~L~~~tgY~~~dL~~~v~~ 443 (486)
+.+.+. ...+..+|++++++++.|+.|+.|+||.||||||++|+..++.. .+.|...|.+++||+.++|.+|+..
T Consensus 163 ~~~~~~-~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~ 241 (257)
T 1g3n_C 163 VGGSQH-LDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQ 241 (257)
T ss_dssp SCSSTT-HHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCChhH-HHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHH
Confidence 643321 23456789999999999999999999999999999999998742 1579999999999999999999999
Q ss_pred HHHHHhhcCCCChh
Q 011434 444 LEDLQLNTDGCSLN 457 (486)
Q Consensus 444 L~~l~~~~~~~~l~ 457 (486)
|.+++.+.....++
T Consensus 242 i~~l~~~~~~~~l~ 255 (257)
T 1g3n_C 242 ILTSVSDFDLRILD 255 (257)
T ss_dssp HHHHHHHCCCCC--
T ss_pred HHHHHHHCCHHhhc
Confidence 99988766544443
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=9.7e-49 Score=385.94 Aligned_cols=239 Identities=19% Similarity=0.306 Sum_probs=215.9
Q ss_pred CCCCCCCcchhhchHHHHHHHHHHHHHhcCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhh
Q 011434 209 IDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFL 288 (486)
Q Consensus 209 id~d~~dp~~~seY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfL 288 (486)
++.+..||++|++ +|||. |+..|.++.|.++||...|++|++.||.++||||++|+..|++.++|+|+||+|+||||
T Consensus 8 ~~~~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfl 84 (254)
T 2f2c_A 8 LNRAKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYL 84 (254)
T ss_dssp CCBCCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHT
T ss_pred CCCCCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 4457889999998 99999 99999999999999986799999999999999999999999999999999999999999
Q ss_pred hcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHh
Q 011434 289 SQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQ 368 (486)
Q Consensus 289 s~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~ 368 (486)
+...+.+.++||+|+||||||||+||..+|.+++|++++++.|++++|++||+.||++|+|+++.|||++||++|+..++
T Consensus 85 s~~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~ 164 (254)
T 2f2c_A 85 CKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALK 164 (254)
T ss_dssp TTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTT
T ss_pred ccCCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hcccccHHHHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCCCCCCC---chhhHHhcCCChhhHHHHHHHHH
Q 011434 369 ASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPW---NSTLEHYTSYKASELKCTVLALE 445 (486)
Q Consensus 369 ~~~~~~~~el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W---~~~L~~~tgY~~~dL~~~v~~L~ 445 (486)
.+.+. ...+..+|+||+++++.|+.|+.|+||.||||||++|+..++.....| ...|.+++||+.++|.+|+..|.
T Consensus 165 ~~~~~-~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~ 243 (254)
T 2f2c_A 165 IPEDL-WPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVS 243 (254)
T ss_dssp CCGGG-HHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CChhh-HHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 43321 223567899999999999999999999999999999999863322246 88999999999999999999999
Q ss_pred HHHhhc
Q 011434 446 DLQLNT 451 (486)
Q Consensus 446 ~l~~~~ 451 (486)
+++.+.
T Consensus 244 ~~~~~~ 249 (254)
T 2f2c_A 244 EAFSLY 249 (254)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 987654
No 5
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=3e-47 Score=381.45 Aligned_cols=253 Identities=25% Similarity=0.425 Sum_probs=225.9
Q ss_pred CCCCcchhhchHHHHHHHHHHHHHhcCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhc-
Q 011434 212 NLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQ- 290 (486)
Q Consensus 212 d~~dp~~~seY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~- 290 (486)
...||.+|.+|.+|||.+|+..|.++.|.++||.. |++|++.||.++|+||++++.+|++.++|+++||+|||||++.
T Consensus 7 ~~~~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~-q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~ 85 (283)
T 1w98_B 7 GSPLPVLSWANREEVWKIMLNKEKTYLRDQHFLEQ-HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQ 85 (283)
T ss_dssp -CCSCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGG-CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcchhhcCHHHHHHHHHHHHHHhCCCchhhcc-CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999986 8999999999999999999999999999999999999999998
Q ss_pred CCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhc
Q 011434 291 NHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQAS 370 (486)
Q Consensus 291 ~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~ 370 (486)
..+.+.++||+|+||||||||+||..+|.+.+|++++++.|++++|++||+.||++|+|++++|||++||++|+..++..
T Consensus 86 ~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~ 165 (283)
T 1w98_B 86 ENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLN 165 (283)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred cccc------HHHHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHH
Q 011434 371 HKVS------CLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLAL 444 (486)
Q Consensus 371 ~~~~------~~el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L 444 (486)
.... .......+.+++++++.|+.|+.|+||.||||||++|+ |.+.+.+++||++++|.+|+..|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~---------~~~~l~~~tg~~~~~i~~c~~~l 236 (283)
T 1w98_B 166 DLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS---------SSELMQKVSGYQWCDIENCVKWM 236 (283)
T ss_dssp SSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS---------CHHHHHHHSCCCHHHHHHHHHHH
T ss_pred chhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH---------ChHHHHHHhCCCHHHHHHHHHHH
Confidence 2210 11223357789999999999999999999999999974 67889999999999999999999
Q ss_pred HHHHhhc---CCCChhhhHhhhCCcccCceeccC
Q 011434 445 EDLQLNT---DGCSLNAIREKYRQEKFKCVATMT 475 (486)
Q Consensus 445 ~~l~~~~---~~~~l~aI~~KY~s~kf~~Vs~~~ 475 (486)
..++... ...++.. ++||+++.|+.|+...
T Consensus 237 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 269 (283)
T 1w98_B 237 VPFAMVIRETGSSKLKH-FRGVADEDAHNIQTHR 269 (283)
T ss_dssp HHHHHHHHHHCCCCCCC-CTTSCGGGGGGBCCCC
T ss_pred HHHHHHHHhcChHhhcc-hhccCHHhccCcccCc
Confidence 8765432 3345554 6799999999999863
No 6
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-47 Score=387.45 Aligned_cols=236 Identities=25% Similarity=0.369 Sum_probs=210.7
Q ss_pred CCCCcchhhchHHHHHHHHHHHHHhcCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcC
Q 011434 212 NLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQN 291 (486)
Q Consensus 212 d~~dp~~~seY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~ 291 (486)
...||.++ |.+|||++|+..|.++.|.++|++++|++|++.||.++|+||++|+..|+|.++|+|+||+||||||+..
T Consensus 29 a~~dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~ 106 (306)
T 3g33_B 29 AGPDPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCV 106 (306)
T ss_dssp ----------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHC
T ss_pred cCCCCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcC
Confidence 57789887 9999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcc
Q 011434 292 HIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASH 371 (486)
Q Consensus 292 ~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~ 371 (486)
.+.+.++||+|+||||||||+||..+|.+++|++++++.|++++|++||+.||++|+|++++|||++||++|+..+....
T Consensus 107 ~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~ 186 (306)
T 3g33_B 107 PTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPR 186 (306)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCT
T ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred cccHHHHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCCCCCCC----chhhHHhcCCChhhHHHHHHHHHHH
Q 011434 372 KVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPW----NSTLEHYTSYKASELKCTVLALEDL 447 (486)
Q Consensus 372 ~~~~~el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W----~~~L~~~tgY~~~dL~~~v~~L~~l 447 (486)
+ ....+...|+||+++++.++.|+.|+||+||||||++|+..++.. +.| ...|.+++||+.++|.+|+..|.++
T Consensus 187 ~-~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~-~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 187 D-RQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGAC-SMSGDELTELLAGITGTEVDCLRACQEQIEAA 264 (306)
T ss_dssp T-THHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC----CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCC-CCchhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 223356789999999999999999999999999999999999854 445 6888999999999999999999998
Q ss_pred Hhhc
Q 011434 448 QLNT 451 (486)
Q Consensus 448 ~~~~ 451 (486)
+.+.
T Consensus 265 ~~~~ 268 (306)
T 3g33_B 265 LRES 268 (306)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8754
No 7
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1e-47 Score=379.18 Aligned_cols=233 Identities=17% Similarity=0.238 Sum_probs=206.9
Q ss_pred cCCCCCCCCcchhhchHHHHHHHHHHHHHhcCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHh
Q 011434 207 VNIDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDR 286 (486)
Q Consensus 207 ~did~d~~dp~~~seY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDR 286 (486)
..+|.+..||++|++ +||.+|+..|.++.| + .+|++|++.||.++||||++|+..|++.++|+|+||+|+||
T Consensus 8 ~~~~~~~~dp~l~~d---~i~~~l~~~E~~~~p----~-~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDR 79 (252)
T 1f5q_B 8 GFLDSSLLNEEDCRQ---MIYRSEREHDARMVG----V-NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDE 79 (252)
T ss_dssp SSCSCTTCCHHHHHH---HHHHHHHHHHHHHSS----S-SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCCCcCcCCHHHhHH---HHHHHHHHHHHHhCc----C-ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 346778899999965 999999999999887 2 34788999999999999999999999999999999999999
Q ss_pred hhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHH
Q 011434 287 FLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQA 366 (486)
Q Consensus 287 fLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~ 366 (486)
||+...+.+.++||+|+||||||||+||..+|.+++|++++++.|+.++|++||+.||++|+|+++.|||++||++|++.
T Consensus 80 fLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~ 159 (252)
T 1f5q_B 80 LFLSTRIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHI 159 (252)
T ss_dssp HHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhcccccHHHHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCCCCCCC----chhhHHhcCCChhhHHHHHH
Q 011434 367 AQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPW----NSTLEHYTSYKASELKCTVL 442 (486)
Q Consensus 367 ~~~~~~~~~~el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W----~~~L~~~tgY~~~dL~~~v~ 442 (486)
++...+. ...+..+|.|++++++.|+.|+.|+||+|||||+.++ ++.. ..| .+.|.+++||+.++|.+|+.
T Consensus 160 ~~~~~~~-~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~---l~~~-~~~~~~~~~~L~~~t~~~~~~l~~C~~ 234 (252)
T 1f5q_B 160 MHAPRED-YLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLT---MNQK-YDYYENRIDGVCKSLYITKEELHQCCD 234 (252)
T ss_dssp TTCCHHH-HHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHH---HTTT-CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCcch-HHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHH---hccC-CCchhhHHHHHHHHHCcCHHHHHHHHH
Confidence 6532211 2246678999999999999999999999999996554 3432 334 67899999999999999999
Q ss_pred HHHHHHhhcC
Q 011434 443 ALEDLQLNTD 452 (486)
Q Consensus 443 ~L~~l~~~~~ 452 (486)
.|.+++.+..
T Consensus 235 ~i~~~l~~~~ 244 (252)
T 1f5q_B 235 LVDIAIVSFD 244 (252)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhC
Confidence 9998876543
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=1.3e-45 Score=366.87 Aligned_cols=239 Identities=29% Similarity=0.435 Sum_probs=206.6
Q ss_pred CCCCCCCcchhhchHHHHHHHHHHHHHhcCCCcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhh
Q 011434 209 IDSNLEDPQVCSLYAPDIYNNIRVTELDQRPSTTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFL 288 (486)
Q Consensus 209 id~d~~dp~~~seY~~dI~~~L~~~E~~~~p~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfL 288 (486)
++.+..||.++ .+|||.+|+..|.++.|.++|+...|++|++.||.++|+||++++.+|++.++|+++||+|||||+
T Consensus 13 ~~~~~~dp~~~---~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl 89 (271)
T 2w96_A 13 IRRAYPDANLL---NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFL 89 (271)
T ss_dssp C--------------CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred cccCCCCCccc---HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhC
Confidence 44578889988 679999999999999999999988899999999999999999999999999999999999999999
Q ss_pred hcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHh
Q 011434 289 SQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQ 368 (486)
Q Consensus 289 s~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~ 368 (486)
+...+.+.++||+|+||||||||+||..+|.+++|++++++.|++++|++||+.||++|+|++++|||++||.+|+..++
T Consensus 90 s~~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~ 169 (271)
T 2w96_A 90 SLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMP 169 (271)
T ss_dssp TTSCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSC
T ss_pred CcCCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred hcccccHHHHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCC---CCCCCc----hhhHHhcCCChhhHHHHH
Q 011434 369 ASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQ---SEHPWN----STLEHYTSYKASELKCTV 441 (486)
Q Consensus 369 ~~~~~~~~el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~---~~~~W~----~~L~~~tgY~~~dL~~~v 441 (486)
...+. ...+...|++++++++.|+.|+.|+||.||||||++|+..++. ..+.|. ..|.+++||+.++|++|+
T Consensus 170 ~~~~~-~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~ 248 (271)
T 2w96_A 170 EAEEN-KQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQ 248 (271)
T ss_dssp CCHHH-HHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHH
T ss_pred CCchH-HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHH
Confidence 32111 1123457899999999999999999999999999999998863 123454 578999999999999999
Q ss_pred HHHHHHHhhc
Q 011434 442 LALEDLQLNT 451 (486)
Q Consensus 442 ~~L~~l~~~~ 451 (486)
..|.+++.+.
T Consensus 249 ~~i~~l~~~~ 258 (271)
T 2w96_A 249 EQIEALLESS 258 (271)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=5.4e-36 Score=294.71 Aligned_cols=211 Identities=19% Similarity=0.287 Sum_probs=181.8
Q ss_pred CcchhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccC
Q 011434 240 STTYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPR 319 (486)
Q Consensus 240 ~~~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~ 319 (486)
.|++.+++++++...||..+++||.+++..|+|+++|+++|++|||||++.+.+.+.++|++|+||||||||+||. ++.
T Consensus 25 ~ps~~~~~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE~-~~~ 103 (258)
T 2i53_A 25 TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEET-PKK 103 (258)
T ss_dssp CHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCC
T ss_pred CchhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHccccc-ccc
Confidence 4566677777888899999999999999999999999999999999999999999999999999999999999994 889
Q ss_pred HHHHHhhh-----cCCC------CHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Q 011434 320 LEEFCFIT-----DNTY------TREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAEL 388 (486)
Q Consensus 320 i~dl~~is-----~~~y------t~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~el~~lA~yLlel 388 (486)
+.+|+..+ ++.| ++++|++||+.||++|+|++.+|||++||.+|+..++.+.. ...++..+|++|++.
T Consensus 104 l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~-~~~~~~~~A~~l~~~ 182 (258)
T 2i53_A 104 CKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKN-KIQKLVQMAWTFVND 182 (258)
T ss_dssp HHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHH
Confidence 99998643 3444 48899999999999999999999999999999986643211 112578899999999
Q ss_pred HhchhcccccCHHHHHHHHHHHHHHHhCCCCCCCchh------hH-HhcCCChhhHHHHHHHHHHHHhhcC
Q 011434 389 TLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNST------LE-HYTSYKASELKCTVLALEDLQLNTD 452 (486)
Q Consensus 389 sL~d~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W~~~------L~-~~tgY~~~dL~~~v~~L~~l~~~~~ 452 (486)
++.++.++.|+||.||+|||++|..+++...+.|+.. +. .++||+.++|.+|+..|.+++.+..
T Consensus 183 s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~~ 253 (258)
T 2i53_A 183 SLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGK 253 (258)
T ss_dssp HTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSSC
T ss_pred HHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999998644556542 12 2579999999999999998876554
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=2.3e-35 Score=290.48 Aligned_cols=214 Identities=18% Similarity=0.233 Sum_probs=183.3
Q ss_pred chhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHH
Q 011434 242 TYMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLE 321 (486)
Q Consensus 242 ~yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~ 321 (486)
....+++++....||..+++||.+++..|+|+++|+++|++|||||++.+.+.+.++|++|+||||||||+||. ++.+.
T Consensus 17 s~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~ 95 (257)
T 2ivx_A 17 SRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLE 95 (257)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHH
Confidence 33444445556699999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHhhh--------------cCCCC--HHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 011434 322 EFCFIT--------------DNTYT--REEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYL 385 (486)
Q Consensus 322 dl~~is--------------~~~yt--~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~el~~lA~yL 385 (486)
+|+.++ ++.|+ +++|++||+.||++|+|++.+|||+.||.+|+..++. ..++..+|++|
T Consensus 96 d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~-----~~~~~~~A~~~ 170 (257)
T 2ivx_A 96 HVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRA-----SKDLAQTSYFM 170 (257)
T ss_dssp HHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCC-----CcHHHHHHHHH
Confidence 998654 44566 8999999999999999999999999999999987753 24677899999
Q ss_pred HHHHhc-hhcccccCHHHHHHHHHHHHHHHhCCCC------CCCchhhHHhcCCChhhHHHHHHHHHHHHhhcCCCChhh
Q 011434 386 AELTLL-EYSFLRFRPSLVAASAVFLAKWTLNQSE------HPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNA 458 (486)
Q Consensus 386 lelsL~-d~~fl~y~PS~IAaAaI~LA~~~l~~~~------~~W~~~L~~~tgY~~~dL~~~v~~L~~l~~~~~~~~l~a 458 (486)
++.++. +..++.|+||.||+|||++|...++... ..|...+ ..||+.++|.+|+..|.+++.... ..+..
T Consensus 171 ~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~~-~~l~~ 247 (257)
T 2ivx_A 171 ATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKTP-NRLKK 247 (257)
T ss_dssp HHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTSH-HHHHH
T ss_pred HHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhCh-HHhhH
Confidence 999986 4448999999999999999999987432 3576543 468999999999999999886543 46778
Q ss_pred hHhhhC
Q 011434 459 IREKYR 464 (486)
Q Consensus 459 I~~KY~ 464 (486)
|+.++.
T Consensus 248 ~~~~~~ 253 (257)
T 2ivx_A 248 IRNWRA 253 (257)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 888775
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=291.72 Aligned_cols=206 Identities=17% Similarity=0.153 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhc----
Q 011434 253 PNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITD---- 328 (486)
Q Consensus 253 ~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~---- 328 (486)
..+|..+++||.+++..|+|+++|+++|++|||||++.+.+.+.++|+||+||||||||+||...|.+.+++.++.
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k 119 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLK 119 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999999999999999999999999999999999998889999887652
Q ss_pred ----------CCCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhchhccccc
Q 011434 329 ----------NTYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRF 398 (486)
Q Consensus 329 ----------~~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~el~~lA~yLlelsL~d~~fl~y 398 (486)
..|++++|++||+.||++|+|++.++||++||.+|+..++. ..++..+|++|++.++.++.++.|
T Consensus 120 ~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~-----~~~~~~~A~~~l~~sl~t~~~l~~ 194 (285)
T 3rgf_B 120 TRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQ-----EDMLLPLAWRIVNDTYRTDLCLLY 194 (285)
T ss_dssp HHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHTTSSHHHHS
T ss_pred ccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHccChhhcc
Confidence 24789999999999999999999999999999999998863 346788999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHHHHHHhhcC----CCChhhhHhhhCCcc
Q 011434 399 RPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNTD----GCSLNAIREKYRQEK 467 (486)
Q Consensus 399 ~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~~l~~~~~----~~~l~aI~~KY~s~k 467 (486)
+||.||+|||++|..+++...+.|. ...||+.++|.+|+..|.+++.+.. ...+..+..||..++
T Consensus 195 ~Ps~IAaAaiylA~~~~~~~~~~W~----~~~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~ 263 (285)
T 3rgf_B 195 PPFMIALACLHVACVVQQKDARQWF----AELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPK 263 (285)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHH----HTSCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHHHHHHHcCCChhhHH----HHHCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCC
Confidence 9999999999999999986544553 4569999999999999999986532 234678889988776
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=1.1e-33 Score=292.02 Aligned_cols=211 Identities=18% Similarity=0.211 Sum_probs=178.7
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHH
Q 011434 243 YMEKLQQDITPNMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEE 322 (486)
Q Consensus 243 yl~~~Q~~It~~~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~d 322 (486)
...+++.+....||..+++||.+|+..|+|+++|+++|++|||||++.+.+.+.++|+||+||||||||+||. ++.+.+
T Consensus 25 ~~dgi~~~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d 103 (358)
T 2pk2_A 25 RRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEH 103 (358)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHH
T ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHH
Confidence 3444455556789999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred HHhhh--------------cCCCC--HHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcccccHHHHHHHHHHHH
Q 011434 323 FCFIT--------------DNTYT--REEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLA 386 (486)
Q Consensus 323 l~~is--------------~~~yt--~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~el~~lA~yLl 386 (486)
|+.++ ++.|+ +++|++||+.||++|+|+|.+|||+.||.+|+..+.. ..++..+|++|+
T Consensus 104 ~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~-----~~~l~~~A~~ll 178 (358)
T 2pk2_A 104 VIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRA-----SKDLAQTSYFMA 178 (358)
T ss_dssp HHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCC-----CHHHHHHHHHHH
Confidence 98654 34565 8999999999999999999999999999999987653 246788999999
Q ss_pred HHHhchhc-ccccCHHHHHHHHHHHHHHHhCCC------CCCCchhhHHhcCCChhhHHHHHHHHHHHHhhcCCCChhhh
Q 011434 387 ELTLLEYS-FLRFRPSLVAASAVFLAKWTLNQS------EHPWNSTLEHYTSYKASELKCTVLALEDLQLNTDGCSLNAI 459 (486)
Q Consensus 387 elsL~d~~-fl~y~PS~IAaAaI~LA~~~l~~~------~~~W~~~L~~~tgY~~~dL~~~v~~L~~l~~~~~~~~l~aI 459 (486)
+.++.++. ++.|+||.||+|||++|..+++.. ...|...+ ..+|+.++|.+|+..|.+++.... ..++.|
T Consensus 179 ~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~~-~~L~~i 255 (358)
T 2pk2_A 179 TNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKTP-NRLKRI 255 (358)
T ss_dssp HHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTCT-THHHHH
T ss_pred HHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhCc-ccccch
Confidence 99996444 799999999999999999998742 13576544 458999999999999998875443 345555
Q ss_pred Hhh
Q 011434 460 REK 462 (486)
Q Consensus 460 ~~K 462 (486)
..-
T Consensus 256 ~~~ 258 (358)
T 2pk2_A 256 WNW 258 (358)
T ss_dssp HHT
T ss_pred hcc
Confidence 543
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-33 Score=271.97 Aligned_cols=187 Identities=14% Similarity=0.147 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCc-ccchhhhhhhhhhhhccccccccCHHHHHhhhcC-----
Q 011434 256 RGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPK-QRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDN----- 329 (486)
Q Consensus 256 R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~-~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~----- 329 (486)
|..+++||.+++..|+|+++|+++|++|||||++.+.+.+ .++|+||+||||||||+||. ++.+.+|+.++++
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 99999999999999999995 7899999998865
Q ss_pred -CCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhchhcccccCHHHHHHHHH
Q 011434 330 -TYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAV 408 (486)
Q Consensus 330 -~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI 408 (486)
.+++++|++||+.||++|+|++.++||+.||.+|+..++. ..++..+|++|++.++.++.++.|+||.||+|||
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~-----~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai 181 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGII-----NQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAAL 181 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSS-----CHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHH
Confidence 6899999999999999999999999999999999985432 3457789999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHHHHHHhhc
Q 011434 409 FLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQLNT 451 (486)
Q Consensus 409 ~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~~l~~~~ 451 (486)
++|..+++...+.|.+.++ ||+.++|.+|+..|.+++...
T Consensus 182 ~lA~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~i~~ly~~~ 221 (235)
T 1zp2_A 182 LISCCNDENTIPKLLDLIK---STDAFKVILCVQRIISIYYFE 221 (235)
T ss_dssp HHHHTSCTTHHHHHHHHCC---HHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcCCCCCCCcchhh---cCCHHHHHHHHHHHHHHHhhC
Confidence 9999887643223555443 899999999999999988654
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.98 E-value=1.7e-31 Score=272.06 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHhhhcC--cchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcC-
Q 011434 253 PNMRGILIDWLVEVSEEYK--LVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDN- 329 (486)
Q Consensus 253 ~~~R~~LVdWL~eV~~~l~--L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~- 329 (486)
..+|...++||.++|..|+ |+++|+++|++|||||++.+.+.+.++|+||+||||||||+||. ++.+.+|+..+.+
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccC
Confidence 3689999999999999999 99999999999999999999999999999999999999999998 6789999986643
Q ss_pred ----CCCHHHHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHhchhcccccCHHHH
Q 011434 330 ----TYTREEVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASH--KVSCLELEFLANYLAELTLLEYSFLRFRPSLV 403 (486)
Q Consensus 330 ----~yt~~eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~--~~~~~el~~lA~yLlelsL~d~~fl~y~PS~I 403 (486)
.|++++|++||+.||++|+|++.++||+.||.+|+..++... ......+..+|+++++.++.++.++.|+||.|
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~I 212 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQI 212 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHH
Confidence 377899999999999999999999999999999998764311 11234677899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCchhhHHh--cCCChhhHHHHHHHHHHHHhhcCCC---ChhhhHhhh
Q 011434 404 AASAVFLAKWTLNQSEHPWNSTLEHY--TSYKASELKCTVLALEDLQLNTDGC---SLNAIREKY 463 (486)
Q Consensus 404 AaAaI~LA~~~l~~~~~~W~~~L~~~--tgY~~~dL~~~v~~L~~l~~~~~~~---~l~aI~~KY 463 (486)
|+|||++|...++..-+.|...+.++ ++|+.++|.+++..|.+++.+.... ...+|.+|.
T Consensus 213 AaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~~~~~~~~~k~i~~KL 277 (323)
T 1jkw_A 213 ALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKL 277 (323)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 99999999999987657899988776 8899999999999999988765322 346677774
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.94 E-value=1.5e-25 Score=213.61 Aligned_cols=182 Identities=15% Similarity=0.195 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHH
Q 011434 255 MRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTRE 334 (486)
Q Consensus 255 ~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~ 334 (486)
......+||.+++..++|++.|+.+|+.|+|||+..+.+...+++++++||||||||+||. ++++.|++.+++ ++..
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~--~~~~ 80 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR--ISKK 80 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC--CCHH
Confidence 4567789999999999999999999999999999999999999999999999999999998 889999999887 8999
Q ss_pred HHHHHHHHHHHHcCCcccCCCchHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHH
Q 011434 335 EVLKMESQVLNFLHFQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWT 414 (486)
Q Consensus 335 eIl~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~~~~~~~~~~el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~ 414 (486)
+|.++|+.||+.|+|++.+++|+.|+.+|...++. ..++..+|+++++.++.+.-++.|+|+.||+||||+|...
T Consensus 81 ~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l-----~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~ 155 (207)
T 1c9b_A 81 EIGRCFKLILKALETSVDLITTGDFMSRFCSNLCL-----PKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQA 155 (207)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987754 2356789999999999888888999999999999999999
Q ss_pred hCCCCCCCchhhHHhcCCChhhHHHHHHHHHH
Q 011434 415 LNQSEHPWNSTLEHYTSYKASELKCTVLALED 446 (486)
Q Consensus 415 l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~~ 446 (486)
++. +.|...+.+++|++..+|+.++..|.+
T Consensus 156 ~~~--~~~~~~i~~~~~v~~~tI~~~~~~l~~ 185 (207)
T 1c9b_A 156 SAE--KRTQKEIGDIAGVADVTIRQSYRLIYP 185 (207)
T ss_dssp SSS--CCCHHHHHHHHTCCHHHHHHHHHHHGG
T ss_pred HCC--CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 875 578889999999999999999998865
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.88 E-value=3.1e-21 Score=182.72 Aligned_cols=184 Identities=11% Similarity=0.098 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHH
Q 011434 255 MRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTRE 334 (486)
Q Consensus 255 ~R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~ 334 (486)
......+||.+++..++|++.+...|..|++||+....+.....+.++++|||+|||.|+ .+.++.|++.+++ ++..
T Consensus 8 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~--v~~~ 84 (200)
T 1ais_B 8 NLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR--VDKK 84 (200)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT--SCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC--CCHH
Confidence 355789999999999999999999999999999999989888999999999999999999 5889999999876 8999
Q ss_pred HHHHHHHHHHHHcCCcccC--CCchHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHH
Q 011434 335 EVLKMESQVLNFLHFQLSV--PTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAK 412 (486)
Q Consensus 335 eIl~mE~~IL~~L~f~L~~--pTp~~FL~~fl~~~~~~~~~~~~el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~ 412 (486)
+|.++++.|++.|+|++.. ++|+.|+.+|...++.+ .++...|++|++.+..+.-+.+++|+.|||||||+|.
T Consensus 85 ~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~-----~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~ 159 (200)
T 1ais_B 85 EIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLS-----EKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIAS 159 (200)
T ss_dssp HHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCC-----HHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999988642 3567899999999999888899999999999999999
Q ss_pred HHhCCCCCCCchhhHHhcCCChhhHHHHHHHHHHHH
Q 011434 413 WTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQ 448 (486)
Q Consensus 413 ~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~~l~ 448 (486)
...+. +.|...+..++|++..+|..++..|.+.+
T Consensus 160 ~~~~~--~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 160 LLEGE--KRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHTTC--CCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHhCC--CCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 98875 57999999999999999999999887753
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.3e-17 Score=171.06 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHH
Q 011434 256 RGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREE 335 (486)
Q Consensus 256 R~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~e 335 (486)
.......|..++..++|+..+.-.|..||.+|+....+.....+.|+++|||||||.|+. |.++.||+.+++ ++..+
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~--v~~ke 202 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKE 202 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS--CCSHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC--CCHHH
Confidence 456789999999999999999999999999999999999999999999999999999887 889999999876 89999
Q ss_pred HHHHHHHHHHHcC------------CcccCCCchHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhchhcccccCHHHH
Q 011434 336 VLKMESQVLNFLH------------FQLSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLV 403 (486)
Q Consensus 336 Il~mE~~IL~~L~------------f~L~~pTp~~FL~~fl~~~~~~~~~~~~el~~lA~yLlelsL~d~~fl~y~PS~I 403 (486)
|.++++.|++.|+ |++..++|..|+.+|...++.+ .++...|++|++.++.+.-+..++|+.|
T Consensus 203 Igr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~-----~~v~~~A~~i~~~~~~~~l~~Gr~P~~I 277 (345)
T 3k7a_M 203 FGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP-----MQVTTSAEYTAKKCKEIKEIAGKSPITI 277 (345)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHhchhcCCCHHHH
Confidence 9999999999999 9999999999999999987643 3567889999999998888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHHHHH
Q 011434 404 AASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDL 447 (486)
Q Consensus 404 AaAaI~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~~l 447 (486)
||||||+|..+++. ..|...+...+|++...|+.+++.|.+.
T Consensus 278 AaAaIylAa~~~~~--~~t~~eIa~~~~Vse~TIr~~ykel~~~ 319 (345)
T 3k7a_M 278 AVVSIYLNILLFQI--PITAAKVGQTLQVTEGTIKSGYKILYEH 319 (345)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999998875 4688899999999999999888877654
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.20 E-value=2.6e-11 Score=124.37 Aligned_cols=179 Identities=12% Similarity=0.094 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHH
Q 011434 257 GILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEV 336 (486)
Q Consensus 257 ~~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eI 336 (486)
......|.+++..++|+..+.-.|..|+.+++....+.......++++||||||+.++. |-++.|++.+++ .+..+|
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~--v~~kei 203 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH--VKTKEF 203 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT--CCTTHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhC--CCHHHH
Confidence 34567889999999999999999999999999998888888999999999999999885 778999998876 689999
Q ss_pred HHHHHHHHHHcCCc------------ccCCCchHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhchhcccccCHHHHH
Q 011434 337 LKMESQVLNFLHFQ------------LSVPTTKSFLRRFIQAAQASHKVSCLELEFLANYLAELTLLEYSFLRFRPSLVA 404 (486)
Q Consensus 337 l~mE~~IL~~L~f~------------L~~pTp~~FL~~fl~~~~~~~~~~~~el~~lA~yLlelsL~d~~fl~y~PS~IA 404 (486)
.+..+.|.+.|+.. +....|.+|+.+|...++.+ .++...|..|++.+..+.-....+|+.||
T Consensus 204 gr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~-----~~v~~~A~~i~~~~~~~~i~~GR~P~~IA 278 (345)
T 4bbr_M 204 GKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP-----MQVTTSAEYTAKKCKEIKEIAGKSPITIA 278 (345)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHhcccccCCChHHHH
Confidence 99999999999974 67778999999999887653 34567888898887776666789999999
Q ss_pred HHHHHHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHHH
Q 011434 405 ASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALE 445 (486)
Q Consensus 405 aAaI~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~ 445 (486)
|||||+|..+.+.. .-...+...+|.+..-|+..+..|.
T Consensus 279 AAaIylAa~l~g~~--~t~~eIa~v~~Vse~TIr~rykel~ 317 (345)
T 4bbr_M 279 VVSIYLNILLFQIP--ITAAKVGQTLQVTEGTIKSGYKILY 317 (345)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHhCCC--CCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999887642 2223466666777666665555554
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.33 E-value=2.4e-06 Score=85.12 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=89.0
Q ss_pred HHHHHHHHhhhcCcchHHHHHHHHHHHhhhhcC---CCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHH
Q 011434 259 LIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQN---HIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREE 335 (486)
Q Consensus 259 LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~---~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~e 335 (486)
+-+||..+....+++.+++-+|+.|+||+.... .+...+..-+-++||.+|+|+-+.....-..+..+ ++++..|
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--gGisl~E 154 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--GGVRCHE 154 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH--HTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc--cCcCHHH
Confidence 567899999999999999999999999998753 34566788888999999999977777788888887 4589999
Q ss_pred HHHHHHHHHHHcCCcccCCCchHHHHHHHHHH
Q 011434 336 VLKMESQVLNFLHFQLSVPTTKSFLRRFIQAA 367 (486)
Q Consensus 336 Il~mE~~IL~~L~f~L~~pTp~~FL~~fl~~~ 367 (486)
+-.||+..|..|+|+|.+. ...|..+++...
T Consensus 155 LN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~ 185 (293)
T 2pmi_B 155 LNILENDFLKRVNYRIIPR-DHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCceeeC-HHHHHHHHHHHh
Confidence 9999999999999999766 556766665543
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.38 E-value=0.011 Score=54.90 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=76.7
Q ss_pred HHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHH
Q 011434 261 DWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKME 340 (486)
Q Consensus 261 dWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE 340 (486)
++|...+..++++.++...|..++.+.+....+.......++++|+|+||+.... +.+..++..+++ ++...|.+.=
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~--vs~~ti~~~~ 186 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR--VTEVTVRNRY 186 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT--CCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC--CCHHHHHHHH
Confidence 5688888999999999999999999999877777888999999999999998764 457888888776 6899999999
Q ss_pred HHHHHHcCCcc
Q 011434 341 SQVLNFLHFQL 351 (486)
Q Consensus 341 ~~IL~~L~f~L 351 (486)
..+.+.|+..+
T Consensus 187 ~~l~~~l~~~~ 197 (200)
T 1ais_B 187 KELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHTCCC
T ss_pred HHHHHHcCCCC
Confidence 99999998665
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=93.58 E-value=0.18 Score=46.96 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=69.3
Q ss_pred HHHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHH
Q 011434 260 IDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKM 339 (486)
Q Consensus 260 VdWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~m 339 (486)
.++|...+..++++.++..+|..++..-+...-........+|++|+++|++..+. +.+..++...++ ++..+|.+.
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~-~~~~~~i~~~~~--v~~~tI~~~ 179 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE-KRTQKEIGDIAG--VADVTIRQS 179 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSS-CCCHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCC-CCCHHHHHHHhC--CCHHHHHHH
Confidence 46677888899999999999999999988766667788999999999999999764 446677766654 678888888
Q ss_pred HHHHHHHcC
Q 011434 340 ESQVLNFLH 348 (486)
Q Consensus 340 E~~IL~~L~ 348 (486)
=+.|++.++
T Consensus 180 ~~~l~~~l~ 188 (207)
T 1c9b_A 180 YRLIYPRAP 188 (207)
T ss_dssp HHHHGGGHH
T ss_pred HHHHHHHHH
Confidence 777777665
No 22
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=87.18 E-value=0.67 Score=43.94 Aligned_cols=84 Identities=10% Similarity=0.104 Sum_probs=60.4
Q ss_pred HHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHH
Q 011434 261 DWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKME 340 (486)
Q Consensus 261 dWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE 340 (486)
++|......++++.++..+|..++..-+.....-......||++|+++|++......|. +-.... .++.++|..+=
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~--~~~~~~--~~~~~~i~~~~ 211 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPK--LLDLIK--STDAFKVILCV 211 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHH--HHHHCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCC--Ccchhh--cCCHHHHHHHH
Confidence 34555556678899999999999988776666667778899999999999986543221 111221 57888888888
Q ss_pred HHHHHHcC
Q 011434 341 SQVLNFLH 348 (486)
Q Consensus 341 ~~IL~~L~ 348 (486)
..|+....
T Consensus 212 ~~i~~ly~ 219 (235)
T 1zp2_A 212 QRIISIYY 219 (235)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88877543
No 23
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=87.04 E-value=1.5 Score=42.06 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=59.5
Q ss_pred HHHHHHhhhcCcchHHHHHHHHHHHhhh-hcCCCCcccchhhhhhhhhhhhccccccccCHH---HHHhhhcCCCCHHHH
Q 011434 261 DWLVEVSEEYKLVPDTLYLTVNLIDRFL-SQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLE---EFCFITDNTYTREEV 336 (486)
Q Consensus 261 dWL~eV~~~l~L~~eTl~lAV~llDRfL-s~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~---dl~~is~~~yt~~eI 336 (486)
+||......++.+.+...+|..++..-+ .....-......||++|+++|+++-....|... .+....+..++.++|
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 4555666677788888888888875544 233345567889999999999998654333211 122223446899999
Q ss_pred HHHHHHHHHHc
Q 011434 337 LKMESQVLNFL 347 (486)
Q Consensus 337 l~mE~~IL~~L 347 (486)
..+-..|++.+
T Consensus 228 ~~~~~~i~~~~ 238 (257)
T 2ivx_A 228 DELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
No 24
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=85.30 E-value=1.5 Score=41.85 Aligned_cols=88 Identities=9% Similarity=0.129 Sum_probs=63.1
Q ss_pred HHHHHHhhhcCcch----HHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCH------HHHHhhhcCC
Q 011434 261 DWLVEVSEEYKLVP----DTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRL------EEFCFITDNT 330 (486)
Q Consensus 261 dWL~eV~~~l~L~~----eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i------~dl~~is~~~ 330 (486)
+||......++.+. +...+|..+++.-+.....-......||++|+++|+++-....|.. ..........
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 56677777777776 5788899999888776666677889999999999999865432211 1111111236
Q ss_pred CCHHHHHHHHHHHHHHcC
Q 011434 331 YTREEVLKMESQVLNFLH 348 (486)
Q Consensus 331 yt~~eIl~mE~~IL~~L~ 348 (486)
++.++|..+-..|++...
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 899999999999987654
No 25
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=84.58 E-value=1.3 Score=44.96 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=59.2
Q ss_pred HHHHHhhhcCcchHHHHHHHHHHHhhhh-cCCCCcccchhhhhhhhhhhhccccccccCH---HHHHhhhcCCCCHHHHH
Q 011434 262 WLVEVSEEYKLVPDTLYLTVNLIDRFLS-QNHIPKQRLQLVGVTCMLIASKYEEIIAPRL---EEFCFITDNTYTREEVL 337 (486)
Q Consensus 262 WL~eV~~~l~L~~eTl~lAV~llDRfLs-~~~i~~~~lqLva~TCL~IASK~EE~~~P~i---~dl~~is~~~yt~~eIl 337 (486)
||......++.+.+...+|.+++..-+. ....-......||++||++|+++-....|.. ..+....+..++.++|.
T Consensus 156 fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~ 235 (358)
T 2pk2_A 156 HVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLD 235 (358)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHH
Confidence 4555556677788888889888855443 2334556788999999999999865433321 11222334468999999
Q ss_pred HHHHHHHHHcC
Q 011434 338 KMESQVLNFLH 348 (486)
Q Consensus 338 ~mE~~IL~~L~ 348 (486)
.+-..|++.++
T Consensus 236 ~i~~~il~~y~ 246 (358)
T 2pk2_A 236 ELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999987663
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=81.67 E-value=1.5 Score=42.87 Aligned_cols=81 Identities=11% Similarity=0.130 Sum_probs=58.7
Q ss_pred HHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHH
Q 011434 261 DWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKME 340 (486)
Q Consensus 261 dWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE 340 (486)
++|......++++.++..+|..++..-+.....-......||++|+++|++...... ...... -.++.++|..+-
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~--~~~~~~~l~~~~ 233 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA---RQWFAE--LSVDMEKILEII 233 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHT--SCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh---hhHHHH--HCCCHHHHHHHH
Confidence 456666667778888999999999887665555566788999999999999865422 222222 357888888887
Q ss_pred HHHHHH
Q 011434 341 SQVLNF 346 (486)
Q Consensus 341 ~~IL~~ 346 (486)
..|+..
T Consensus 234 ~~il~l 239 (285)
T 3rgf_B 234 RVILKL 239 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=77.40 E-value=2.6 Score=40.74 Aligned_cols=83 Identities=12% Similarity=0.067 Sum_probs=59.2
Q ss_pred HHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHHHHH
Q 011434 261 DWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVLKME 340 (486)
Q Consensus 261 dWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl~mE 340 (486)
+||...+...+++.++..+|-.+++.-+....+-......+|++|+++|++.-+.. +...++..++ +|+.++|...=
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~t--g~~~~~l~~~~ 216 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYL--SYTEESLLPVM 216 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHS--CCCSSTTTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHH--CCCHHHHHHHH
Confidence 56777777888888888899999998877666677778899999999999985542 2233444443 35666666655
Q ss_pred HHHHHH
Q 011434 341 SQVLNF 346 (486)
Q Consensus 341 ~~IL~~ 346 (486)
..|+..
T Consensus 217 ~~l~~~ 222 (269)
T 2b9r_A 217 QHLAKN 222 (269)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 28
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=77.18 E-value=6.4 Score=37.60 Aligned_cols=86 Identities=9% Similarity=-0.055 Sum_probs=57.4
Q ss_pred HHHHHHHhhhcCcchHH----HHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhcccccc-----ccCHHHHHhhhcCC
Q 011434 260 IDWLVEVSEEYKLVPDT----LYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEII-----APRLEEFCFITDNT 330 (486)
Q Consensus 260 VdWL~eV~~~l~L~~eT----l~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~-----~P~i~dl~~is~~~ 330 (486)
.+||......++++.++ ..+|-.+++.-+....+-......+|++|+++|.+.-... ......+..++ +
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t--~ 229 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL--G 229 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH--T
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH--C
Confidence 45555555666666554 3457778876666566667788999999999999986532 12234454443 4
Q ss_pred CCHHHHHHHHHHHHHHc
Q 011434 331 YTREEVLKMESQVLNFL 347 (486)
Q Consensus 331 yt~~eIl~mE~~IL~~L 347 (486)
|+.++|..+=..|...+
T Consensus 230 ~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 230 CDVSVLQAAVEQILTSV 246 (257)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 78888888877776654
No 29
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=76.94 E-value=4.7 Score=38.65 Aligned_cols=85 Identities=13% Similarity=-0.040 Sum_probs=60.6
Q ss_pred HHHHHHHhhhcCcch-HHHHHHHHHHHhhhhcCC-CCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHH
Q 011434 260 IDWLVEVSEEYKLVP-DTLYLTVNLIDRFLSQNH-IPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVL 337 (486)
Q Consensus 260 VdWL~eV~~~l~L~~-eTl~lAV~llDRfLs~~~-i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl 337 (486)
.+||......++++. .+..+|-.+++.-+.... +-......+|++|+++|++.-+. ++....+..++ +|+.++|.
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~--g~~~~~i~ 216 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKT--GYTLESLK 216 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHh--CcCHHHHH
Confidence 567777788888765 677788888887554444 55667789999999999997554 33344555554 47888988
Q ss_pred HHHHHHHHHc
Q 011434 338 KMESQVLNFL 347 (486)
Q Consensus 338 ~mE~~IL~~L 347 (486)
.+=..|+..+
T Consensus 217 ~~~~~l~~~~ 226 (260)
T 2cch_B 217 PCLMDLHQTY 226 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877777654
No 30
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=76.23 E-value=9.5 Score=38.43 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHHHHH
Q 011434 377 ELEFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDL 447 (486)
Q Consensus 377 el~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~~l 447 (486)
.+...|.+|...++..-.+-..+...|||||||+|++..+. |.--..+..+++.+..+|-.++..|.+.
T Consensus 145 ~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~--prtl~eI~~~~~v~~keigr~~k~l~~~ 213 (345)
T 4bbr_M 145 IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV--ARTFKEIQSLIHVKTKEFGKTLNIMKNI 213 (345)
T ss_dssp HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC--BCCHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC--CccHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45566778887766555455788999999999999998764 3334567778899999999888887653
No 31
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=75.42 E-value=6.4 Score=37.56 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=54.5
Q ss_pred HHHHHHhhhcCcchHHH----HHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccC----HHHHHhhhcCCCC
Q 011434 261 DWLVEVSEEYKLVPDTL----YLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPR----LEEFCFITDNTYT 332 (486)
Q Consensus 261 dWL~eV~~~l~L~~eTl----~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~----i~dl~~is~~~yt 332 (486)
+||......++++.++. ..|.++++.-+....+-......+|++|+++|.+.....+.. ...+..++ +|+
T Consensus 154 ~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t--g~~ 231 (254)
T 2f2c_A 154 DFLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL--NFS 231 (254)
T ss_dssp GSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH--TCC
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH--CcC
Confidence 34444445555555542 356677776555555666778899999999999985222212 45555554 478
Q ss_pred HHHHHHHHHHHHHHc
Q 011434 333 REEVLKMESQVLNFL 347 (486)
Q Consensus 333 ~~eIl~mE~~IL~~L 347 (486)
.++|..+=..|.+.+
T Consensus 232 ~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 232 TNTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899888877776654
No 32
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=71.28 E-value=0.83 Score=46.18 Aligned_cols=55 Identities=7% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHhhhcCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccc
Q 011434 261 DWLVEVSEEYKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEI 315 (486)
Q Consensus 261 dWL~eV~~~l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~ 315 (486)
++|...+..++++.++..+|..|+.+.+...-.......-||++|||||+.+...
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCC
Confidence 7889999999999999999999999988766667778899999999999998654
No 33
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=66.96 E-value=13 Score=36.61 Aligned_cols=88 Identities=11% Similarity=0.000 Sum_probs=54.4
Q ss_pred HHHHHhhhcCcchH----HHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccC----HHHHHhhhcCCCCH
Q 011434 262 WLVEVSEEYKLVPD----TLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPR----LEEFCFITDNTYTR 333 (486)
Q Consensus 262 WL~eV~~~l~L~~e----Tl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~----i~dl~~is~~~yt~ 333 (486)
||......+++..+ ....|-++++.-+....+-......||++|+++|.+.-+..++. ...+..++ .|+.
T Consensus 174 fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~t--g~~~ 251 (306)
T 3g33_B 174 FLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGIT--GTEV 251 (306)
T ss_dssp GHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHH--TCCH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH--CCCH
Confidence 44444444554433 22445666665555555666778899999999999986644433 23344443 4789
Q ss_pred HHHHHHHHHHHHHcCCcc
Q 011434 334 EEVLKMESQVLNFLHFQL 351 (486)
Q Consensus 334 ~eIl~mE~~IL~~L~f~L 351 (486)
++|..+-..|+..+.=.+
T Consensus 252 ~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 252 DCLRACQEQIEAALRESL 269 (306)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988888887766433
No 34
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=66.82 E-value=11 Score=37.51 Aligned_cols=90 Identities=11% Similarity=0.155 Sum_probs=57.3
Q ss_pred HHHHHHHHhhh---cCcchHHHHHHHHHHHhhhhcCCCCcccchhhhhhhhhhhhccccccccC-HHHHHhhhcCCCCHH
Q 011434 259 LIDWLVEVSEE---YKLVPDTLYLTVNLIDRFLSQNHIPKQRLQLVGVTCMLIASKYEEIIAPR-LEEFCFITDNTYTRE 334 (486)
Q Consensus 259 LVdWL~eV~~~---l~L~~eTl~lAV~llDRfLs~~~i~~~~lqLva~TCL~IASK~EE~~~P~-i~dl~~is~~~yt~~ 334 (486)
+..++..+... ++.......+|..++..-+.....-......||++|+++|++......|. ...+....+..++.+
T Consensus 167 L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~ 246 (323)
T 1jkw_A 167 FEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLS 246 (323)
T ss_dssp HHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHH
Confidence 34455555433 23334556778788876555444445667899999999999986654443 333333334567888
Q ss_pred HHHHHHHHHHHHcC
Q 011434 335 EVLKMESQVLNFLH 348 (486)
Q Consensus 335 eIl~mE~~IL~~L~ 348 (486)
+|...=..|+..+.
T Consensus 247 ~l~~~~~~i~~l~~ 260 (323)
T 1jkw_A 247 QLLDIMKSMRNLVK 260 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777776554
No 35
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=62.14 E-value=1.1e+02 Score=28.93 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhhcCcchHHHHHHHHHHHhhhhc---CCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHH
Q 011434 258 ILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQ---NHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTRE 334 (486)
Q Consensus 258 ~LVdWL~eV~~~l~L~~eTl~lAV~llDRfLs~---~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~ 334 (486)
.+.+-|..++.+-+++..++--||.+--.|.-. .+..-.+-+-|+++||+||+---. .|..+.++..+ |....
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~~~-~PiplaE~r~l-D~sL~-- 89 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEEAQ-QPLPLAEVRCL-DSSLG-- 89 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHH-CTTCC--
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHHcC-CCccHHHHHHH-hhhhh--
Confidence 345666889999999999999999999998754 345556778899999999985322 35556665543 44444
Q ss_pred HHHHHHHHHHHHcCC
Q 011434 335 EVLKMESQVLNFLHF 349 (486)
Q Consensus 335 eIl~mE~~IL~~L~f 349 (486)
||.---.+|++.|+-
T Consensus 90 Dvelrr~Eiv~~l~l 104 (260)
T 3h4c_A 90 DVELRRADIVRELHL 104 (260)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccC
Confidence 333333456666664
No 36
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=58.65 E-value=40 Score=32.21 Aligned_cols=67 Identities=22% Similarity=0.096 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhcC--CChhhHHHHHHHHHH
Q 011434 379 EFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTS--YKASELKCTVLALED 446 (486)
Q Consensus 379 ~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~tg--Y~~~dL~~~v~~L~~ 446 (486)
..+|-.+++-.+....+.....-.+|+||+++|.+.-+.. ++--..+..+++ |+.++|...-..|.+
T Consensus 78 l~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~-p~~~~~~~~~~~~~~~~~eI~~mE~~IL~ 146 (271)
T 2w96_A 78 FPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETI-PLTAEKLCIYTDNSIRPEELLQMELLLVN 146 (271)
T ss_dssp HHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3456666777666666778899999999999999987752 223344555653 888888765544443
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=51.70 E-value=66 Score=31.00 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhch-hcccccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhc--CCChhhHHHHHHHHHH
Q 011434 379 EFLANYLAELTLLE-YSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYT--SYKASELKCTVLALED 446 (486)
Q Consensus 379 ~~lA~yLlelsL~d-~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~t--gY~~~dL~~~v~~L~~ 446 (486)
-.+|-.+++-.+.- ........-.+|+||+++|.+.-+.. ++-...+..++ .|+.++|...-..|.+
T Consensus 71 l~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~-~p~l~~~~~i~~~~~~~~ei~~mE~~IL~ 140 (283)
T 1w98_B 71 FYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIY-PPKLHQFAYVTDGACSGDEILTMELMIMK 140 (283)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSS-CCCHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccC-CCcHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34555566655544 34567888999999999999987653 33334566666 4888888766554444
No 38
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=45.93 E-value=72 Score=31.48 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=55.6
Q ss_pred CchHHHHHHHHHHhhcccccHHHHHHHH-HHHHHHHhchhcc--cccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhcC
Q 011434 355 TTKSFLRRFIQAAQASHKVSCLELEFLA-NYLAELTLLEYSF--LRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTS 431 (486)
Q Consensus 355 Tp~~FL~~fl~~~~~~~~~~~~el~~lA-~yLlelsL~d~~f--l~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~tg 431 (486)
+..+|+.++++....+ .....++ .||-.+......+ ......-+-.+|+.+|.+.++-. ..|+..+..+.|
T Consensus 76 SI~~Yl~RI~k~t~ls-----~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~-~ysN~~wAkVgG 149 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLE-----HCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDS-FSTNAHYAKVGG 149 (293)
T ss_dssp CHHHHHHHHHHTTTCC-----HHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhcccc-ccChhHhhhccC
Confidence 3466777777654321 1222223 3444333333333 35778899999999999999854 678899999999
Q ss_pred CChhhHHHHHHHHH
Q 011434 432 YKASELKCTVLALE 445 (486)
Q Consensus 432 Y~~~dL~~~v~~L~ 445 (486)
++..||...=..+.
T Consensus 150 isl~ELN~LE~eFL 163 (293)
T 2pmi_B 150 VRCHELNILENDFL 163 (293)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999876544443
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=32.80 E-value=1.4e+02 Score=24.48 Aligned_cols=78 Identities=8% Similarity=0.180 Sum_probs=50.5
Q ss_pred HHHHhhhcCcchHHHHHHHHHHHhhhhcC------CCCcccchhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHH
Q 011434 263 LVEVSEEYKLVPDTLYLTVNLIDRFLSQN------HIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEV 336 (486)
Q Consensus 263 L~eV~~~l~L~~eTl~lAV~llDRfLs~~------~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eI 336 (486)
+.++|..|++.. ..-.|-.+|++|=..- .+.-++.+.+ ++|+|.|||.--..+.. ..|+..++ .++.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~-aaA~~~acr~~K~kVdK-~KL~~~s~--lk~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSRPLFT-SAALLSACKILKLKVDK-NKMVATSG--VKKAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHH-HHHHHHHHHHTTCCCCH-HHHHHTTC--BCHHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccccHHH-HHHHHHHHHHHccCCCH-HHHHHHHC--CCHHHH
Confidence 456778888665 7778889999997542 2333455554 58999999997765543 33443333 467777
Q ss_pred HHHHHHHHH
Q 011434 337 LKMESQVLN 345 (486)
Q Consensus 337 l~mE~~IL~ 345 (486)
-..+..+-+
T Consensus 81 ~~l~~~~e~ 89 (95)
T 3m03_A 81 DRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 40
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=31.10 E-value=1.8e+02 Score=27.52 Aligned_cols=63 Identities=19% Similarity=-0.026 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhchhcccccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhc--CCChhhHHHHHH
Q 011434 379 EFLANYLAELTLLEYSFLRFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYT--SYKASELKCTVL 442 (486)
Q Consensus 379 ~~lA~yLlelsL~d~~fl~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~t--gY~~~dL~~~v~ 442 (486)
-.+|-.+++-.+.....-....-.+|++|+++|.+.-+.. ++-...+..++ .|+.++|...=.
T Consensus 70 ~~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~-p~~~~~l~~~~~~~yt~~~i~~mE~ 134 (252)
T 1f5q_B 70 FPLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYM-PIKATQLAYLCGGATTADKLLTLEV 134 (252)
T ss_dssp HHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 4456666666665556667788999999999999987653 33334555566 477787765433
No 41
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=30.29 E-value=91 Score=27.28 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhh------------------------cCcchHHH---HHHHHHHHhhhhcCCCCcccchhh
Q 011434 249 QDITPNMRGILIDWLVEVSEE------------------------YKLVPDTL---YLTVNLIDRFLSQNHIPKQRLQLV 301 (486)
Q Consensus 249 ~~It~~~R~~LVdWL~eV~~~------------------------l~L~~eTl---~lAV~llDRfLs~~~i~~~~lqLv 301 (486)
++|+...=..+|+|+..-... ++++.+++ .+|.+|||- -.|+
T Consensus 47 ~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I-----------~~Ll 115 (159)
T 2ast_A 47 PNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI-----------KGLL 115 (159)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTC-----------HHHH
T ss_pred CCccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhH-----------HHHH
Confidence 456666666677776543311 45666654 345566553 2468
Q ss_pred hhhhhhhhhccccccccCHHHHHhhhcCCCCHHHHH
Q 011434 302 GVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEVL 337 (486)
Q Consensus 302 a~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eIl 337 (486)
-++|-++|..+....+-.++.+..|. +.||.++-.
T Consensus 116 d~~c~~va~~i~gkt~eeir~~f~I~-~d~t~eEe~ 150 (159)
T 2ast_A 116 DVTCKTVANMIKGKTPEEIRKTFNIK-NDFTEEEEA 150 (159)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHTTCC-CCSCTTHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHHH
Confidence 88999999999876555555555553 458877643
No 42
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=25.98 E-value=1.1e+02 Score=25.02 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=38.6
Q ss_pred ccCHHHHHHHHHHHHHHHhCCCCCCCchhhHHhcCCChhhHHHHHHHHHHHHh
Q 011434 397 RFRPSLVAASAVFLAKWTLNQSEHPWNSTLEHYTSYKASELKCTVLALEDLQL 449 (486)
Q Consensus 397 ~y~PS~IAaAaI~LA~~~l~~~~~~W~~~L~~~tgY~~~dL~~~v~~L~~l~~ 449 (486)
.+.--+-++||+|.+.+.+... .--..|...+|.+..++..++..|..+..
T Consensus 42 D~s~P~f~aaA~~~acr~~K~k--VdK~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 42 DLSRPLFTSAALLSACKILKLK--VDKNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp CTTSHHHHHHHHHHHHHHTTCC--CCHHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHccC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3444456777888888877653 33568999999999999999998887643
No 43
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=22.67 E-value=1.1e+02 Score=27.17 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=26.0
Q ss_pred hhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHH
Q 011434 299 QLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEV 336 (486)
Q Consensus 299 qLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eI 336 (486)
.|+-++|-.+|..+....+-.++.+..|. +.||+++-
T Consensus 120 ~Lldl~c~~vA~~ikgktpeeiR~~f~I~-nd~t~eEe 156 (169)
T 3v7d_A 120 PLLDAGCKVVAEMIRGRSPEEIRRTFNIV-NDFTPEEE 156 (169)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCC-CCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHH
Confidence 46788999999998777554555555554 45888764
No 44
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.43 E-value=80 Score=27.80 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=26.4
Q ss_pred hhhhhhhhhhhhccccccccCHHHHHhhhcCCCCHHHH
Q 011434 299 QLVGVTCMLIASKYEEIIAPRLEEFCFITDNTYTREEV 336 (486)
Q Consensus 299 qLva~TCL~IASK~EE~~~P~i~dl~~is~~~yt~~eI 336 (486)
.|+-++|-++|..+....+-.++.+..|. +.||+++-
T Consensus 112 ~Lldl~c~~vA~~ikgkt~eeir~~f~I~-nd~t~eEe 148 (160)
T 2p1m_A 112 NLLDLTCQTVADMIKGKTPEEIRTTFNIK-NDFTPEEE 148 (160)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTTCC-CCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCC-CCCCHHHH
Confidence 46888999999999776555555555553 45888654
No 45
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=21.91 E-value=1.2e+02 Score=30.03 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=45.5
Q ss_pred HHHHhhhcCcchHHHHHHHHHHHhhhhc----CCCCcccchhhhhhhhhhhhccccccccCHHHHHhhhc
Q 011434 263 LVEVSEEYKLVPDTLYLTVNLIDRFLSQ----NHIPKQRLQLVGVTCMLIASKYEEIIAPRLEEFCFITD 328 (486)
Q Consensus 263 L~eV~~~l~L~~eTl~lAV~llDRfLs~----~~i~~~~lqLva~TCL~IASK~EE~~~P~i~dl~~is~ 328 (486)
..++|..++++..|.--|..++.+.-+. .....+. +..-.+|||+|+.-.+....++..+++.++
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~-~~~w~acLY~a~~~~~~n~vsLt~LLr~~~ 74 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKK-KELWGICIFIAAVDLDEMSFTFTELQKNIE 74 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CH-HHHHHHHHHHHHHHHTCCCSCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccch-HHHHHHhHHHHhhccCCCcCcHHHHHHHcC
Confidence 4678999999999999999999996553 1333333 333445699999876666777877777654
Done!