BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011435
(486 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2
SV=1
Length = 727
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF 134
+ P K+ V + GE + + + + +T G+++ +G DG+ +EA F
Sbjct: 219 LFPGKVTVDKSGERLVIADTGHHRILVT-----LKNGQILHTIGGPNSGRKDGRFSEAAF 273
Query: 135 NHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAG-GKSNVAGFRDGPSEDAKFSN 191
N P+GV + + +YVADT N IRKI VTT+AG G V E+ S+
Sbjct: 274 NSPQGVAIKNN-VIYVADTENHLIRKIDLELEIVTTVAGIGIQGVDKEGGAKGEEQPISS 332
Query: 192 DFDVVY 197
+DVV+
Sbjct: 333 PWDVVF 338
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 123 GHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIR----KIGDAGVTTIAGGKSNVA 177
G VDG A+ HP G+T D K LYVAD+ N I+ K+ + G SNV
Sbjct: 458 GDVDGAGINAKLQHPLGITWDKKRKLLYVADSYNHKIKVVDPKMKNCATLAGTGEASNVV 517
Query: 178 G 178
G
Sbjct: 518 G 518
>sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2 OS=Bos taurus GN=NHLRC2 PE=2 SV=1
Length = 726
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 123 GHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIG--DAGVTTIA--GGKSNVA 177
G VDG AR HP GVT D K N LYVAD+ N I+ + TT+A G SN+
Sbjct: 463 GDVDGVGINARLQHPLGVTWDQKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTGNASNMI 522
Query: 178 G 178
G
Sbjct: 523 G 523
Score = 38.9 bits (89), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 22/148 (14%)
Query: 68 IEGNEIGVVPYKIRVSEDGELF----AVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTG 123
I N+IG+ YK + LF VD V++ +V ++ R++ G
Sbjct: 204 IRANKIGIKLYKDSLPPSPLLFPGKITVDHVSNRLV-----IADTGHHRILVVWKNGQIQ 258
Query: 124 HVDGKPN---------EARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAGG 172
+ G PN E+ FN P+GV + + +YVADT N IRKI V+T+AG
Sbjct: 259 YSIGGPNPGRKDGIFSESSFNSPQGVAIMNN-IIYVADTENHLIRKIDLEAEMVSTVAGI 317
Query: 173 KSNVAGFRDGPSEDAK-FSNDFDVVYVR 199
G D + S+ +DVV+ R
Sbjct: 318 GIQGTDKEGGAKGDEQPISSPWDVVFGR 345
>sp|Q8BZW8|NHLC2_MOUSE NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1
Length = 725
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 123 GHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAG 171
G DG +E+ FN P+GV + D +YVADT N IRKI VTT+AG
Sbjct: 267 GRKDGMFSESSFNSPQGVAIADN-VIYVADTENHLIRKIDLEAEKVTTVAG 316
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 123 GHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIG--DAGVTTIAG 171
G VDG A+ HP GV D++ LYVAD+ N I+ + G TT+AG
Sbjct: 463 GDVDGAGINAKLQHPLGVAWDEERQVLYVADSYNHKIKVVDPKTKGCTTLAG 514
>sp|Q8NBF2|NHLC2_HUMAN NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1
Length = 726
Score = 39.3 bits (90), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 123 GHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNLAIRKIG--DAGVTTIAG-GKSN 175
G VDG A+ HP GVT D K N LYVAD+ N I+ + TT+AG G +N
Sbjct: 463 GDVDGVGINAKLQHPLGVTWDKKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTGDTN 519
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 28/149 (18%)
Query: 68 IEGNEIGVVPYKIRVSEDGELF----AVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTG 123
I N+IG+ YK + LF VD+V +V ++ R++ G
Sbjct: 204 IRDNKIGIKLYKDSLPPSPLLFPGKVTVDQVTDRLV-----IADTGHHRILVVWKNGQIQ 258
Query: 124 HVDGKPN---------EARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG--VTTIAG- 171
+ G PN E+ FN P+GV + + +YVADT N IRKI V+T+AG
Sbjct: 259 YSIGGPNPGRKDGIFSESTFNSPQGVAIMNN-IIYVADTENHLIRKIDLEAEKVSTVAGI 317
Query: 172 ---GKSNVAGFRDGPSEDAKFSNDFDVVY 197
G G + E S+ +DVV+
Sbjct: 318 GIQGTDKEGGAK---GEQQPISSPWDVVF 343
>sp|Q9W6V6|TEN1_CHICK Teneurin-1 OS=Gallus gallus GN=TENM1 PE=1 SV=1
Length = 2705
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 127 GKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAG 171
GK +EA N P+G+T+D G +Y D IRKI + G +TTI G
Sbjct: 1278 GKASEASLNSPRGITIDKHGFIYFVD--GTMIRKIDENGMITTIIG 1321
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 121 YTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155
+ GH G A+FN+P GV +DD G++YVAD N
Sbjct: 795 FGGHGQGN---AKFNNPWGVAVDDLGSIYVADKDN 826
>sp|Q9WTS4|TEN1_MOUSE Teneurin-1 OS=Mus musculus GN=Tenm1 PE=1 SV=1
Length = 2731
Score = 35.8 bits (81), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 127 GKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIG-DAGVTTIAG 171
GK +EA N P+G+T+D G +Y D IR+I +A +TT+ G
Sbjct: 1304 GKASEASLNSPRGITVDRHGFIYFVD--GTMIRRIDENAVITTVIG 1347
>sp|Q9UKZ4|TEN1_HUMAN Teneurin-1 OS=Homo sapiens GN=TENM1 PE=1 SV=2
Length = 2725
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 127 GKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIG-DAGVTTIAG 171
G+ +EA N P+G+T+D G +Y D IRKI +A +TT+ G
Sbjct: 1298 GRASEASLNSPRGITVDRHGFIYFVD--GTMIRKIDENAVITTVIG 1341
>sp|Q9W7R4|TEN3_DANRE Teneurin-3 OS=Danio rerio GN=tenm3 PE=2 SV=1
Length = 2590
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 126 DGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI 161
DG +AR N P + + G LYVAD N+ IR I
Sbjct: 1353 DGYAKDARLNAPSSLVVSPDGTLYVADLGNIRIRAI 1388
>sp|F6QEU4|LIN41_XENTR E3 ubiquitin-protein ligase TRIM71 OS=Xenopus tropicalis GN=trim71
PE=3 SV=1
Length = 814
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
P + S+DG L D N ++ I P + F G G +G+ F
Sbjct: 696 PRGVAFSQDGYLVVTDFNNHRLLIIKPDCQ--------SAHFLGTEGTGNGQ-----FLR 742
Query: 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIA-GGKSNVAGFRDGPSEDAKFSNDFDV 195
P+GV +D +G + VAD+ N ++ G G + + G D PS
Sbjct: 743 PQGVAVDQEGRIIVADSRNHRVQIFEPNGSFLCKFGTQGSGFGQMDRPSG---------- 792
Query: 196 VYVRPTCSLLVIDRGN 211
+ V P +++V+D GN
Sbjct: 793 IAVTPDGTIVVVDFGN 808
>sp|P34611|NCL1_CAEEL B-box type zinc finger protein ncl-1 OS=Caenorhabditis elegans
GN=ncl-1 PE=1 SV=1
Length = 851
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 14/124 (11%)
Query: 103 PPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIG 162
P SQ R +++ G G ++G+ F P GV ++ +G++ VADT N I+
Sbjct: 560 PSRSQIKRQKMIYHCKFGEFGVMEGQ-----FTEPSGVAVNGQGDIVVADTNNHRIQVFD 614
Query: 163 DAGVTTIAGGKSNVAGFRDG----PSEDA--KFSNDFDVVYVRPTCSLLVIDRGNAALRQ 216
G G+ G RDG P+ A + + DF V PT + V ++ LR+
Sbjct: 615 KEGRFKFQFGE---CGKRDGQLLYPNRVAVNRTTGDFVVTERSPTHQIQVYNQYGQFLRK 671
Query: 217 ISLN 220
N
Sbjct: 672 FGAN 675
>sp|Q6N022|TEN4_HUMAN Teneurin-4 OS=Homo sapiens GN=TENM4 PE=1 SV=2
Length = 2769
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 127 GKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFR 180
GK EA +P+G+T+D G +Y D IR+I G+ + G +++ R
Sbjct: 1340 GKATEATLTNPRGITVDKFGLIYFVD--GTMIRRIDQNGIISTLLGSNDLTSAR 1391
>sp|O05871|PKND_MYCTU Serine/threonine-protein kinase PknD OS=Mycobacterium tuberculosis
GN=pknD PE=1 SV=1
Length = 664
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
P + V G ++ D N+ +VK L+ S+ + V F G N
Sbjct: 512 PEGLAVDTQGAVYVADRGNNRVVK----LAAGSKTQTVL-PFTG-------------LND 553
Query: 137 PKGVTMDDKGNLYVADTLNLAIRKI 161
P GV +D+ GN+YV DT N + K+
Sbjct: 554 PDGVAVDNSGNVYVTDTDNNRVVKL 578
>sp|P62576|NANA_STRR6 Sialidase A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
GN=nanA PE=1 SV=1
Length = 1035
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 218 SLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETE 277
S+ + C Y +S + M+VGAV+ G + Q+G ++QP +E E
Sbjct: 19 SVQERKCRYSIRKLSVGAVSMIVGAVVFGTSPVLAQEG-------ASEQPLANETQLSGE 71
Query: 278 IKELSNKEKPIPIVES 293
L++ EK P E+
Sbjct: 72 SSTLTDTEKSQPSSET 87
>sp|P62575|NANA_STREE Sialidase A OS=Streptococcus pneumoniae GN=nanA PE=1 SV=1
Length = 1035
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 218 SLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPSESEFNEETE 277
S+ + C Y +S + M+VGAV+ G + Q+G ++QP +E E
Sbjct: 19 SVQERKCRYSIRKLSVGAVSMIVGAVVFGTSPVLAQEG-------ASEQPLANETQLSGE 71
Query: 278 IKELSNKEKPIPIVES 293
L++ EK P E+
Sbjct: 72 SSTLTDTEKSQPSSET 87
>sp|Q3UHK6|TEN4_MOUSE Teneurin-4 OS=Mus musculus GN=Tenm4 PE=1 SV=2
Length = 2771
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 127 GKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFR 180
GK EA +P+G+T+D G +Y D IR++ G+ + G +++ R
Sbjct: 1342 GKATEATLTNPRGITVDKFGLIYFVD--GTMIRRVDQNGIISTLLGSNDLTSAR 1393
>sp|E1BJS7|LIN41_BOVIN E3 ubiquitin-protein ligase TRIM71 OS=Bos taurus GN=TRIM71 PE=3
SV=2
Length = 868
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
P + + +G L D N ++ I P Q +R F G G +G+ F
Sbjct: 750 PRGVAFNHEGHLVVTDFNNHRLLVIHPD-CQSAR-------FLGSEGTGNGQ-----FLR 796
Query: 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIA-GGKSNVAGFRDGPSEDAKFSNDFDV 195
P+GV +D +G + VAD+ N ++ G G + + G D PS
Sbjct: 797 PQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSG---------- 846
Query: 196 VYVRPTCSLLVIDRGN 211
+ V P ++V+D GN
Sbjct: 847 IAVTPDGMIVVVDFGN 862
>sp|Q42884|AROC1_SOLLC Chorismate synthase 1, chloroplastic OS=Solanum lycopersicum GN=CS1
PE=2 SV=1
Length = 440
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 98/247 (39%), Gaps = 43/247 (17%)
Query: 50 QADGNVLQFENGYLVETVIE--GNEIGVV----PYKIRVSEDGELFAVDEVNSNIVKITP 103
QA G+ F N + V T E G +G + P ++ +SE +D +IT
Sbjct: 53 QAAGST--FGNYFRVTTFGESHGGGVGCIIDGCPPRLPLSESDMQVELDRRRPGQSRITT 110
Query: 104 PLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIR-KIG 162
P + ++ +G+ G T G P + + D +GN Y ++LA R
Sbjct: 111 PRKETDTCKISSGTADGLT---TGSPIKVEVPN-----TDQRGNDY--SEMSLAYRPSHA 160
Query: 163 DA------GVTTIAGGKSNVAG---FRDGPSEDAK-----FSNDFDVVYVRPTCSLLV-- 206
DA GV ++ GG + A R AK +S + YV +++
Sbjct: 161 DATYDFKYGVRSVQGGGRSSARETIGRVAAGAVAKKILKLYSGAEVLAYVSQVHQVVLPE 220
Query: 207 --IDRGNAALRQISLNQDDC---EYQYNSISPTDILMVVGAVLVGYVTCM---LQQGFGP 258
ID N L QI N C EY I+ D + V G + G VTC+ L +G G
Sbjct: 221 DLIDHQNVTLEQIESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNLPRGLGT 280
Query: 259 FFFSRTQ 265
F + +
Sbjct: 281 PVFDKLE 287
>sp|Q5JS37|NHLC3_HUMAN NHL repeat-containing protein 3 OS=Homo sapiens GN=NHLRC3 PE=2 SV=1
Length = 347
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 77 PYKIRVSEDGELFAVDE---VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEAR 133
P ++ V + G+++ VD +N+ ++K LSQ F H + A+
Sbjct: 166 PAELYVEDTGDIYIVDGDGGLNNRLIK----LSQ---------DFMILWLHGENGTGPAK 212
Query: 134 FNHPKGVTMDDKGNLYVADTLNLAIR 159
FN P VT+D G ++VAD N I+
Sbjct: 213 FNIPHSVTLDSAGRVWVADRGNKRIQ 238
>sp|Q5R9V0|NHLC3_PONAB NHL repeat-containing protein 3 OS=Pongo abelii GN=NHLRC3 PE=2 SV=1
Length = 347
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 77 PYKIRVSEDGELFAVDE---VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEAR 133
P ++ V + G+++ VD +N+ ++K LSQ F H + A+
Sbjct: 166 PAELYVEDTGDIYIVDGDGGLNNRLIK----LSQ---------DFMILWLHGENGTGPAK 212
Query: 134 FNHPKGVTMDDKGNLYVADTLNLAIR 159
FN P VT+D G ++VAD N I+
Sbjct: 213 FNIPHSVTLDSAGRVWVADRGNKRIQ 238
>sp|D3ZVM4|LIN41_RAT E3 ubiquitin-protein ligase TRIM71 OS=Rattus norvegicus GN=Trim71
PE=3 SV=1
Length = 855
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
P + + +G L D N ++ I P Q +R F G G +G+ F
Sbjct: 737 PRGVAFNHEGHLVVTDFNNHRLLVIHPD-CQSAR-------FLGSEGTGNGQ-----FLR 783
Query: 137 PKGVTMDDKGNLYVADTLNLAIRKI-GDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDV 195
P+GV +D +G + VAD+ N ++ + G + + G D PS
Sbjct: 784 PQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFGQMDRPSG---------- 833
Query: 196 VYVRPTCSLLVIDRGN 211
+ V P ++V+D GN
Sbjct: 834 IAVTPEGLIVVVDFGN 849
>sp|Q1PSW8|LIN41_MOUSE E3 ubiquitin-protein ligase TRIM71 OS=Mus musculus GN=Trim71 PE=1
SV=1
Length = 855
Score = 32.3 bits (72), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
P + + +G L D N ++ I P Q +R F G G +G+ F
Sbjct: 737 PRGVAFNNEGHLVVTDFNNHRLLVIHPD-CQSAR-------FLGSEGSGNGQ-----FLR 783
Query: 137 PKGVTMDDKGNLYVADTLNLAIRKI-GDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDV 195
P+GV +D +G + VAD+ N ++ + G + + G D PS
Sbjct: 784 PQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFGQMDRPSG---------- 833
Query: 196 VYVRPTCSLLVIDRGN 211
+ V P ++V+D GN
Sbjct: 834 IAVTPDGLIVVVDFGN 849
>sp|Q2Q1W2|LIN41_HUMAN E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1
SV=1
Length = 868
Score = 32.3 bits (72), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 24/136 (17%)
Query: 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136
P + + +G L D N ++ I P Q +R F G G +G+ F
Sbjct: 750 PRGVAFNHEGHLVVTDFNNHRLLVIHPD-CQSAR-------FLGSEGTGNGQ-----FLR 796
Query: 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIA-GGKSNVAGFRDGPSEDAKFSNDFDV 195
P+GV +D +G + VAD+ N ++ G G + + G D PS
Sbjct: 797 PQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSG---------- 846
Query: 196 VYVRPTCSLLVIDRGN 211
+ + P ++V+D GN
Sbjct: 847 IAITPDGMIVVVDFGN 862
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,750,348
Number of Sequences: 539616
Number of extensions: 8433406
Number of successful extensions: 16447
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 16401
Number of HSP's gapped (non-prelim): 88
length of query: 486
length of database: 191,569,459
effective HSP length: 121
effective length of query: 365
effective length of database: 126,275,923
effective search space: 46090711895
effective search space used: 46090711895
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)