Query 011435
Match_columns 486
No_of_seqs 308 out of 1748
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 01:19:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 99.7 4.7E-16 1E-20 181.1 20.2 142 74-221 739-889 (1057)
2 PLN02919 haloacid dehalogenase 99.7 3.2E-15 7E-20 174.2 21.2 143 74-223 567-716 (1057)
3 PF08450 SGL: SMP-30/Gluconola 99.5 1.6E-12 3.4E-17 127.1 17.9 116 73-222 84-215 (246)
4 KOG4659 Uncharacterized conser 99.4 3.2E-12 6.8E-17 144.6 17.0 209 50-265 373-612 (1899)
5 KOG4659 Uncharacterized conser 99.3 2.1E-11 4.5E-16 138.1 13.2 139 75-220 533-691 (1899)
6 PF08450 SGL: SMP-30/Gluconola 99.2 3.6E-10 7.8E-15 110.4 18.0 152 77-266 42-204 (246)
7 COG3386 Gluconolactonase [Carb 99.0 1.3E-08 2.7E-13 104.3 18.5 123 74-222 110-245 (307)
8 TIGR02604 Piru_Ver_Nterm putat 99.0 3.4E-08 7.4E-13 103.1 19.6 162 61-266 1-204 (367)
9 COG3391 Uncharacterized conser 98.7 1.8E-06 3.9E-11 90.8 20.0 119 75-222 116-241 (381)
10 COG4257 Vgb Streptogramin lyas 98.6 6E-07 1.3E-11 89.6 14.6 143 76-265 63-208 (353)
11 COG3386 Gluconolactonase [Carb 98.6 1.7E-06 3.7E-11 88.8 18.3 129 50-211 140-277 (307)
12 TIGR02604 Piru_Ver_Nterm putat 98.6 1.3E-06 2.7E-11 91.4 15.3 124 65-219 65-212 (367)
13 KOG1520 Predicted alkaloid syn 98.5 4.7E-07 1E-11 94.0 11.2 148 75-263 115-282 (376)
14 PF01436 NHL: NHL repeat; Int 98.5 1.4E-07 3.1E-12 62.8 3.9 28 134-161 1-28 (28)
15 COG4257 Vgb Streptogramin lyas 98.4 1.2E-05 2.5E-10 80.6 16.3 168 74-268 103-298 (353)
16 PF10282 Lactonase: Lactonase, 98.4 3.2E-05 7E-10 80.0 19.6 127 74-221 191-323 (345)
17 PF03088 Str_synth: Strictosid 98.4 1.5E-06 3.2E-11 73.6 7.8 69 78-165 1-88 (89)
18 COG3391 Uncharacterized conser 98.3 1.9E-05 4.1E-10 83.1 16.7 139 54-222 143-285 (381)
19 PF10282 Lactonase: Lactonase, 98.3 1.5E-05 3.3E-10 82.4 15.1 125 74-221 143-276 (345)
20 KOG1214 Nidogen and related ba 98.3 4.7E-06 1E-10 92.5 10.8 117 74-222 1067-1188(1289)
21 PF03088 Str_synth: Strictosid 98.2 6.6E-06 1.4E-10 69.7 7.5 68 138-221 1-88 (89)
22 PRK11028 6-phosphogluconolacto 98.1 0.00016 3.5E-09 73.5 18.0 125 75-220 126-258 (330)
23 PF01436 NHL: NHL repeat; Int 98.1 4.6E-06 9.9E-11 55.5 4.4 27 75-101 2-28 (28)
24 PRK11028 6-phosphogluconolacto 98.1 6.6E-05 1.4E-09 76.4 14.0 121 75-220 80-205 (330)
25 KOG1214 Nidogen and related ba 98.0 9.7E-05 2.1E-09 82.4 14.7 115 74-224 1110-1230(1289)
26 KOG1520 Predicted alkaloid syn 97.9 0.00026 5.7E-09 73.9 15.2 98 135-257 115-232 (376)
27 TIGR03866 PQQ_ABC_repeats PQQ- 97.7 0.004 8.7E-08 60.4 19.6 119 76-222 158-281 (300)
28 TIGR03606 non_repeat_PQQ dehyd 97.7 0.0042 9.2E-08 67.1 21.0 93 57-163 15-123 (454)
29 PF02239 Cytochrom_D1: Cytochr 97.7 0.0029 6.3E-08 66.6 18.7 136 54-221 19-159 (369)
30 PF07995 GSDH: Glucose / Sorbo 97.4 0.0017 3.6E-08 67.3 12.4 163 75-265 2-201 (331)
31 COG2706 3-carboxymuconate cycl 97.4 0.0079 1.7E-07 62.2 16.9 147 73-252 189-343 (346)
32 KOG4499 Ca2+-binding protein R 97.3 0.0017 3.7E-08 64.1 10.3 81 76-165 159-242 (310)
33 TIGR03866 PQQ_ABC_repeats PQQ- 97.3 0.015 3.3E-07 56.4 17.2 125 56-221 16-146 (300)
34 PF06977 SdiA-regulated: SdiA- 97.3 0.00073 1.6E-08 67.5 7.8 76 75-161 171-247 (248)
35 PF06977 SdiA-regulated: SdiA- 97.1 0.0046 9.9E-08 61.9 11.7 121 77-217 120-247 (248)
36 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.0076 1.6E-07 63.2 13.5 111 86-222 13-138 (352)
37 TIGR03118 PEPCTERM_chp_1 conse 97.1 0.019 4.2E-07 58.8 15.7 116 78-220 141-279 (336)
38 PF05787 DUF839: Bacterial pro 97.0 0.0093 2E-07 65.7 13.9 85 70-154 345-455 (524)
39 TIGR02658 TTQ_MADH_Hv methylam 97.0 0.016 3.5E-07 60.8 14.6 99 51-165 27-137 (352)
40 PF07995 GSDH: Glucose / Sorbo 97.0 0.0069 1.5E-07 62.7 11.7 122 76-212 50-203 (331)
41 TIGR03606 non_repeat_PQQ dehyd 96.9 0.033 7.1E-07 60.4 16.7 118 76-212 80-251 (454)
42 PF13449 Phytase-like: Esteras 96.9 0.014 2.9E-07 60.4 12.9 134 75-221 85-252 (326)
43 PF03022 MRJP: Major royal jel 96.8 0.028 6E-07 57.3 13.8 60 136-209 187-254 (287)
44 KOG4499 Ca2+-binding protein R 96.5 0.028 6E-07 55.8 11.2 79 133-221 156-242 (310)
45 PF02239 Cytochrom_D1: Cytochr 96.5 0.22 4.8E-06 52.5 19.0 136 53-222 60-204 (369)
46 PRK02888 nitrous-oxide reducta 96.4 0.068 1.5E-06 59.7 14.8 89 135-228 321-412 (635)
47 COG2133 Glucose/sorbosone dehy 96.4 0.053 1.1E-06 57.8 13.2 133 75-221 239-398 (399)
48 PF05787 DUF839: Bacterial pro 96.3 0.045 9.7E-07 60.4 13.1 92 131-223 346-471 (524)
49 COG2706 3-carboxymuconate cycl 96.3 0.17 3.7E-06 52.6 16.0 122 77-221 147-275 (346)
50 COG3211 PhoX Predicted phospha 95.9 0.1 2.2E-06 57.4 12.6 81 74-154 416-519 (616)
51 PF00058 Ldl_recept_b: Low-den 95.5 0.048 1E-06 39.5 5.9 41 86-144 1-42 (42)
52 TIGR03118 PEPCTERM_chp_1 conse 95.5 0.84 1.8E-05 47.1 16.7 134 74-222 22-172 (336)
53 COG2133 Glucose/sorbosone dehy 95.3 0.53 1.1E-05 50.3 15.5 131 78-222 180-352 (399)
54 smart00135 LY Low-density lipo 95.3 0.037 8E-07 38.8 4.8 33 133-165 7-40 (43)
55 PF03022 MRJP: Major royal jel 95.3 0.056 1.2E-06 55.1 7.8 70 76-161 187-259 (287)
56 PF05096 Glu_cyclase_2: Glutam 95.1 0.87 1.9E-05 46.1 15.3 107 76-220 46-157 (264)
57 PF05096 Glu_cyclase_2: Glutam 95.0 0.87 1.9E-05 46.1 15.1 112 75-221 90-204 (264)
58 PF13449 Phytase-like: Esteras 94.9 0.67 1.5E-05 47.9 14.7 30 136-165 86-121 (326)
59 PF01731 Arylesterase: Arylest 94.9 0.087 1.9E-06 44.4 6.5 29 134-162 53-82 (86)
60 COG3204 Uncharacterized protei 94.6 1.3 2.8E-05 45.5 15.2 148 59-220 115-312 (316)
61 COG3204 Uncharacterized protei 94.6 0.1 2.2E-06 53.3 7.3 75 78-163 236-311 (316)
62 KOG1215 Low-density lipoprotei 93.8 0.32 6.9E-06 56.8 10.4 117 75-224 480-602 (877)
63 TIGR03032 conserved hypothetic 93.7 2.4 5.2E-05 44.1 15.2 121 76-222 104-234 (335)
64 smart00135 LY Low-density lipo 93.5 0.23 4.9E-06 34.7 5.3 35 188-222 7-41 (43)
65 TIGR03032 conserved hypothetic 93.3 0.3 6.5E-06 50.5 7.9 72 52-151 186-257 (335)
66 PRK02888 nitrous-oxide reducta 93.1 0.29 6.3E-06 54.8 8.1 84 75-171 321-412 (635)
67 KOG0266 WD40 repeat-containing 92.9 2.3 4.9E-05 46.0 14.5 113 77-223 206-321 (456)
68 PF01731 Arylesterase: Arylest 92.4 1 2.3E-05 38.0 8.7 32 189-220 53-84 (86)
69 PF02333 Phytase: Phytase; In 91.9 2.6 5.6E-05 44.9 13.0 79 75-165 208-291 (381)
70 KOG0318 WD40 repeat stress pro 91.9 8.9 0.00019 42.2 16.9 110 76-222 365-475 (603)
71 COG3211 PhoX Predicted phospha 91.5 2.6 5.7E-05 46.7 12.7 80 131-212 413-521 (616)
72 PF14269 Arylsulfotran_2: Aryl 90.7 6.2 0.00014 40.5 14.1 130 76-222 145-291 (299)
73 PF00058 Ldl_recept_b: Low-den 90.6 0.57 1.2E-05 33.9 4.6 38 146-199 1-41 (42)
74 KOG0266 WD40 repeat-containing 90.0 31 0.00068 37.3 20.3 131 56-222 230-366 (456)
75 TIGR02276 beta_rpt_yvtn 40-res 89.8 1.1 2.3E-05 31.3 5.4 21 85-105 2-23 (42)
76 PRK03629 tolB translocation pr 89.7 19 0.0004 38.6 17.3 73 78-169 202-282 (429)
77 PF14517 Tachylectin: Tachylec 89.6 1.4 3.1E-05 43.7 7.9 112 78-222 84-208 (229)
78 cd00200 WD40 WD40 domain, foun 89.4 17 0.00037 33.4 16.5 110 76-221 95-208 (289)
79 PF06739 SBBP: Beta-propeller 89.4 0.3 6.4E-06 34.8 2.3 19 136-154 14-32 (38)
80 PF02333 Phytase: Phytase; In 88.1 6.3 0.00014 42.0 12.1 75 136-222 209-292 (381)
81 smart00284 OLF Olfactomedin-li 87.3 8.2 0.00018 39.0 11.8 81 79-165 78-162 (255)
82 PRK04792 tolB translocation pr 87.0 32 0.00069 37.1 17.1 69 78-165 221-295 (448)
83 PF06739 SBBP: Beta-propeller 86.5 1.1 2.3E-05 32.0 3.6 22 75-96 13-34 (38)
84 cd00200 WD40 WD40 domain, foun 86.4 26 0.00057 32.1 17.1 108 78-220 55-165 (289)
85 PF14517 Tachylectin: Tachylec 86.3 9.3 0.0002 38.0 11.4 110 78-221 37-160 (229)
86 PRK01742 tolB translocation pr 86.2 18 0.0004 38.5 14.6 74 78-170 207-288 (429)
87 PF05935 Arylsulfotrans: Aryls 85.9 16 0.00034 40.0 14.1 123 80-220 153-301 (477)
88 KOG1446 Histone H3 (Lys4) meth 84.4 44 0.00095 34.7 15.3 87 54-163 83-169 (311)
89 PRK02889 tolB translocation pr 84.0 48 0.001 35.3 16.5 68 79-165 200-273 (427)
90 TIGR02800 propeller_TolB tol-p 83.7 41 0.00088 35.0 15.6 69 78-165 237-311 (417)
91 KOG0291 WD40-repeat-containing 83.7 11 0.00023 43.3 11.5 111 76-220 352-466 (893)
92 KOG1215 Low-density lipoprotei 83.4 11 0.00025 44.0 12.4 114 75-222 523-641 (877)
93 PTZ00421 coronin; Provisional 82.6 83 0.0018 34.7 18.1 111 78-221 79-199 (493)
94 PRK03629 tolB translocation pr 82.3 60 0.0013 34.7 16.5 68 79-165 247-320 (429)
95 PRK11138 outer membrane biogen 82.2 40 0.00087 35.3 14.9 24 139-164 115-138 (394)
96 TIGR02800 propeller_TolB tol-p 81.8 35 0.00076 35.5 14.2 69 78-165 193-267 (417)
97 PRK05137 tolB translocation pr 81.7 36 0.00078 36.3 14.5 84 60-165 190-279 (435)
98 PRK04792 tolB translocation pr 81.6 23 0.00049 38.2 13.0 68 79-165 266-339 (448)
99 PRK04922 tolB translocation pr 81.6 50 0.0011 35.2 15.5 69 78-165 295-369 (433)
100 COG3823 Glutamine cyclotransfe 80.6 3.8 8.3E-05 40.4 5.9 62 85-153 185-248 (262)
101 KOG0291 WD40-repeat-containing 80.5 36 0.00079 39.2 14.1 110 77-220 395-508 (893)
102 PRK00178 tolB translocation pr 80.3 83 0.0018 33.2 17.4 69 78-165 202-276 (430)
103 PRK05137 tolB translocation pr 80.2 57 0.0012 34.7 15.4 69 78-165 293-367 (435)
104 PRK04043 tolB translocation pr 80.1 56 0.0012 35.1 15.3 67 80-165 238-310 (419)
105 KOG0318 WD40 repeat stress pro 79.8 35 0.00076 37.8 13.3 115 72-222 403-519 (603)
106 PRK04922 tolB translocation pr 79.8 78 0.0017 33.7 16.3 69 78-165 207-281 (433)
107 PRK01029 tolB translocation pr 79.1 56 0.0012 35.1 15.0 71 78-165 284-360 (428)
108 KOG0289 mRNA splicing factor [ 78.6 53 0.0011 35.7 13.9 95 57-170 331-428 (506)
109 PRK02889 tolB translocation pr 78.5 53 0.0012 35.0 14.5 69 78-165 243-317 (427)
110 PF06433 Me-amine-dh_H: Methyl 77.6 7.6 0.00016 40.8 7.4 110 87-222 4-128 (342)
111 PF07433 DUF1513: Protein of u 77.2 33 0.00073 35.6 11.9 56 141-210 57-119 (305)
112 PRK04043 tolB translocation pr 76.7 66 0.0014 34.6 14.6 68 79-165 192-266 (419)
113 PF02191 OLF: Olfactomedin-lik 76.2 38 0.00083 34.0 11.8 82 78-165 72-157 (250)
114 COG1520 FOG: WD40-like repeat 75.6 46 0.001 34.6 12.8 67 81-165 64-131 (370)
115 KOG0282 mRNA splicing factor [ 75.6 30 0.00065 37.8 11.2 134 50-221 277-416 (503)
116 KOG0271 Notchless-like WD40 re 75.3 48 0.001 35.5 12.4 119 78-226 119-241 (480)
117 PF05935 Arylsulfotrans: Aryls 74.9 28 0.0006 38.1 11.3 92 77-172 192-311 (477)
118 PF14269 Arylsulfotran_2: Aryl 74.7 1.1E+02 0.0023 31.5 18.2 86 133-222 142-242 (299)
119 PRK00178 tolB translocation pr 72.7 82 0.0018 33.2 14.0 68 79-165 247-320 (430)
120 KOG3567 Peptidylglycine alpha- 72.0 9 0.00019 41.6 6.4 127 75-220 168-298 (501)
121 KOG0272 U4/U6 small nuclear ri 71.7 33 0.00071 37.0 10.3 112 76-221 305-419 (459)
122 TIGR02276 beta_rpt_yvtn 40-res 71.4 19 0.00041 24.8 6.1 22 200-221 2-23 (42)
123 KOG1446 Histone H3 (Lys4) meth 71.1 1.4E+02 0.0029 31.2 14.8 118 76-220 142-262 (311)
124 KOG3567 Peptidylglycine alpha- 70.5 6.5 0.00014 42.7 5.0 35 131-165 463-497 (501)
125 COG3823 Glutamine cyclotransfe 69.3 38 0.00082 33.7 9.4 71 145-219 185-258 (262)
126 KOG0281 Beta-TrCP (transducin 68.6 41 0.00088 35.7 10.0 64 145-227 329-395 (499)
127 PRK11138 outer membrane biogen 68.5 71 0.0015 33.4 12.3 27 137-165 287-313 (394)
128 PF13360 PQQ_2: PQQ-like domai 68.4 1.1E+02 0.0023 28.9 16.0 88 56-165 8-96 (238)
129 KOG0293 WD40 repeat-containing 68.1 1.2E+02 0.0027 32.9 13.6 127 57-222 297-427 (519)
130 PTZ00420 coronin; Provisional 65.6 2.4E+02 0.0052 31.9 17.4 118 77-222 170-295 (568)
131 PLN00181 protein SPA1-RELATED; 65.0 1.8E+02 0.0039 33.7 15.7 117 77-222 486-608 (793)
132 PRK01742 tolB translocation pr 64.2 1.3E+02 0.0029 32.0 13.5 68 79-165 252-325 (429)
133 KOG0271 Notchless-like WD40 re 61.0 2E+02 0.0044 31.0 13.5 112 75-221 158-277 (480)
134 smart00108 B_lectin Bulb-type 60.9 53 0.0012 28.3 8.1 54 77-158 55-108 (114)
135 KOG0973 Histone transcription 60.8 74 0.0016 37.8 11.3 77 77-171 132-211 (942)
136 KOG0315 G-protein beta subunit 60.3 2.1E+02 0.0045 29.4 13.1 69 138-223 219-291 (311)
137 KOG2055 WD40 repeat protein [G 59.7 2.3E+02 0.0049 31.3 13.8 27 139-165 308-334 (514)
138 PTZ00420 coronin; Provisional 59.6 3E+02 0.0066 31.1 17.8 112 77-222 77-199 (568)
139 KOG3545 Olfactomedin and relat 59.4 44 0.00094 33.7 8.0 66 85-165 77-156 (249)
140 KOG0268 Sof1-like rRNA process 58.3 35 0.00076 36.3 7.4 94 51-165 208-303 (433)
141 KOG0263 Transcription initiati 58.3 79 0.0017 36.3 10.7 68 138-222 581-651 (707)
142 KOG0308 Conserved WD40 repeat- 56.8 3.2E+02 0.007 31.3 14.8 160 76-268 119-288 (735)
143 PF08662 eIF2A: Eukaryotic tra 55.8 1.9E+02 0.0041 27.5 13.9 96 77-209 62-162 (194)
144 TIGR03300 assembly_YfgL outer 55.6 1.7E+02 0.0036 30.2 12.2 58 85-165 241-298 (377)
145 KOG1274 WD40 repeat protein [G 55.3 2.9E+02 0.0063 32.8 14.6 100 86-221 66-169 (933)
146 PF07433 DUF1513: Protein of u 55.2 2.7E+02 0.0058 29.1 16.5 145 56-221 82-248 (305)
147 cd00028 B_lectin Bulb-type man 54.7 72 0.0016 27.6 7.9 56 76-159 55-110 (116)
148 KOG1274 WD40 repeat protein [G 54.6 2E+02 0.0043 34.1 13.1 70 78-165 100-169 (933)
149 TIGR03300 assembly_YfgL outer 54.1 2.6E+02 0.0057 28.7 15.9 65 79-165 60-125 (377)
150 KOG3881 Uncharacterized conser 53.3 1.5E+02 0.0033 31.8 11.2 116 75-221 203-321 (412)
151 KOG0303 Actin-binding protein 53.0 3E+02 0.0066 29.8 13.3 114 78-222 177-296 (472)
152 KOG0278 Serine/threonine kinas 53.0 2.7E+02 0.0059 28.5 13.9 124 54-220 168-297 (334)
153 KOG0272 U4/U6 small nuclear ri 52.7 2.3E+02 0.0049 30.9 12.3 79 76-172 347-429 (459)
154 KOG2055 WD40 repeat protein [G 52.6 2.7E+02 0.0058 30.7 13.0 40 179-219 472-511 (514)
155 KOG0263 Transcription initiati 52.4 88 0.0019 36.0 9.8 89 56-165 562-650 (707)
156 PTZ00421 coronin; Provisional 52.3 3.6E+02 0.0079 29.7 19.7 71 77-165 128-199 (493)
157 COG4247 Phy 3-phytase (myo-ino 52.0 2.9E+02 0.0062 28.5 12.4 82 75-165 205-289 (364)
158 KOG0316 Conserved WD40 repeat- 51.4 2.8E+02 0.0061 28.2 13.7 161 51-220 79-268 (307)
159 KOG0772 Uncharacterized conser 50.7 1.5E+02 0.0032 33.1 10.8 75 78-165 171-245 (641)
160 PRK01029 tolB translocation pr 50.5 3.5E+02 0.0075 29.0 17.0 27 138-164 284-313 (428)
161 KOG0283 WD40 repeat-containing 49.7 2.6E+02 0.0057 32.4 13.1 130 76-231 411-545 (712)
162 KOG4649 PQQ (pyrrolo-quinoline 49.0 3.2E+02 0.007 28.2 13.9 75 141-222 142-219 (354)
163 PF15492 Nbas_N: Neuroblastoma 48.8 1.3E+02 0.0028 30.9 9.6 87 140-236 3-90 (282)
164 COG4946 Uncharacterized protei 48.8 3.8E+02 0.0083 29.9 13.4 18 203-220 470-487 (668)
165 COG4946 Uncharacterized protei 48.3 2.7E+02 0.0059 31.0 12.2 27 195-221 416-442 (668)
166 KOG0319 WD40-repeat-containing 47.1 2.1E+02 0.0045 33.2 11.6 113 80-225 25-140 (775)
167 smart00108 B_lectin Bulb-type 46.9 1.5E+02 0.0032 25.5 8.6 54 137-214 55-108 (114)
168 PF14870 PSII_BNR: Photosynthe 46.8 3.5E+02 0.0076 28.0 12.8 76 136-215 188-266 (302)
169 PRK13861 type IV secretion sys 46.5 31 0.00066 35.6 4.8 19 54-72 55-73 (292)
170 KOG0301 Phospholipase A2-activ 45.8 2.9E+02 0.0063 31.8 12.4 69 77-165 182-250 (745)
171 COG4247 Phy 3-phytase (myo-ino 45.5 2.5E+02 0.0054 29.0 10.8 27 137-164 207-234 (364)
172 PLN00181 protein SPA1-RELATED; 45.3 5.4E+02 0.012 29.8 16.9 109 78-221 536-649 (793)
173 PF15416 DUF4623: Domain of un 45.2 1.2E+02 0.0026 32.1 8.8 82 72-165 180-272 (442)
174 KOG4378 Nuclear protein COP1 [ 44.8 1.2E+02 0.0027 33.6 9.1 67 138-222 212-282 (673)
175 cd00028 B_lectin Bulb-type man 44.7 1.1E+02 0.0024 26.4 7.5 56 136-215 55-110 (116)
176 COG2834 LolA Outer membrane li 44.1 32 0.00069 33.4 4.3 20 84-103 85-105 (211)
177 PF05586 Ant_C: Anthrax recept 43.6 24 0.00052 30.1 2.9 38 343-386 20-57 (95)
178 KOG0279 G protein beta subunit 40.8 4.4E+02 0.0095 27.4 14.1 113 77-221 66-181 (315)
179 KOG2096 WD40 repeat protein [G 40.2 4.8E+02 0.01 27.7 13.5 73 76-162 88-161 (420)
180 KOG0289 mRNA splicing factor [ 40.0 3.8E+02 0.0082 29.4 11.7 67 138-221 351-420 (506)
181 PF13360 PQQ_2: PQQ-like domai 39.8 3.2E+02 0.0069 25.5 14.6 63 142-222 170-232 (238)
182 KOG0640 mRNA cleavage stimulat 39.4 1.9E+02 0.0042 30.4 9.2 116 78-221 176-292 (430)
183 KOG1539 WD repeat protein [Gen 39.2 2.7E+02 0.0059 32.8 11.1 109 77-221 496-607 (910)
184 PRK13616 lipoprotein LpqB; Pro 38.2 6.4E+02 0.014 28.6 16.7 76 136-225 449-532 (591)
185 PF05694 SBP56: 56kDa selenium 37.6 1.3E+02 0.0029 32.9 8.1 30 136-165 313-343 (461)
186 KOG0285 Pleiotropic regulator 37.4 3E+02 0.0065 29.5 10.3 111 76-221 153-266 (460)
187 KOG1408 WD40 repeat protein [F 37.1 3E+02 0.0065 32.2 10.8 111 77-220 599-713 (1080)
188 KOG0973 Histone transcription 36.9 5.2E+02 0.011 31.1 13.1 65 138-219 133-200 (942)
189 COG3490 Uncharacterized protei 36.0 5.4E+02 0.012 27.0 15.3 48 56-107 53-102 (366)
190 COG0823 TolB Periplasmic compo 35.8 6E+02 0.013 27.5 13.3 22 203-224 307-328 (425)
191 PF07494 Reg_prop: Two compone 35.6 42 0.00091 21.2 2.5 17 136-152 6-22 (24)
192 KOG0308 Conserved WD40 repeat- 35.3 3.2E+02 0.007 31.4 10.7 77 77-171 174-253 (735)
193 KOG1273 WD40 repeat protein [G 35.2 3.7E+02 0.008 28.5 10.4 69 77-163 26-94 (405)
194 TIGR02608 delta_60_rpt delta-6 34.9 60 0.0013 25.1 3.7 30 78-107 4-40 (55)
195 KOG0772 Uncharacterized conser 34.7 1.1E+02 0.0024 34.1 6.9 130 75-221 318-457 (641)
196 KOG1273 WD40 repeat protein [G 34.1 5.4E+02 0.012 27.3 11.4 115 78-224 69-187 (405)
197 COG4314 NosL Predicted lipopro 33.9 1.3E+02 0.0027 28.5 6.2 9 1-9 1-9 (176)
198 KOG0321 WD40 repeat-containing 32.9 5.1E+02 0.011 29.7 11.7 28 79-107 105-133 (720)
199 TIGR00547 lolA periplasmic cha 32.6 63 0.0014 31.4 4.4 29 75-105 64-95 (204)
200 PF11768 DUF3312: Protein of u 32.4 4E+02 0.0087 30.0 10.9 71 75-165 260-330 (545)
201 PF10647 Gmad1: Lipoprotein Lp 32.3 3.7E+02 0.008 26.6 9.9 64 76-161 25-92 (253)
202 COG4246 Uncharacterized protei 32.0 5.9E+02 0.013 26.3 12.7 26 137-163 137-162 (340)
203 KOG3881 Uncharacterized conser 31.7 1.5E+02 0.0034 31.8 7.2 69 78-165 251-321 (412)
204 PF06433 Me-amine-dh_H: Methyl 30.3 6.9E+02 0.015 26.5 13.1 94 56-165 22-127 (342)
205 KOG2110 Uncharacterized conser 30.2 6E+02 0.013 27.3 11.2 70 78-164 177-248 (391)
206 KOG0646 WD40 repeat protein [G 30.1 7.8E+02 0.017 27.1 12.5 85 136-222 219-309 (476)
207 COG1520 FOG: WD40-like repeat 29.7 6.4E+02 0.014 26.0 15.9 68 141-222 64-132 (370)
208 KOG0279 G protein beta subunit 29.6 6.6E+02 0.014 26.1 16.3 93 137-252 151-251 (315)
209 KOG4378 Nuclear protein COP1 [ 28.8 2.7E+02 0.0058 31.1 8.5 68 78-165 212-281 (673)
210 KOG2096 WD40 repeat protein [G 27.7 1.8E+02 0.0039 30.7 6.8 76 136-220 88-163 (420)
211 PF00400 WD40: WD domain, G-be 27.7 1E+02 0.0022 20.5 3.6 26 77-102 14-39 (39)
212 KOG0278 Serine/threonine kinas 27.6 5.3E+02 0.012 26.5 9.8 69 76-161 223-294 (334)
213 PF00930 DPPIV_N: Dipeptidyl p 27.1 85 0.0018 32.5 4.5 108 86-219 23-130 (353)
214 PF05694 SBP56: 56kDa selenium 26.7 1.7E+02 0.0036 32.2 6.6 75 77-154 314-394 (461)
215 TIGR02781 VirB9 P-type conjuga 26.5 1.3E+02 0.0028 30.0 5.5 17 55-71 52-68 (243)
216 COG3292 Predicted periplasmic 25.8 5E+02 0.011 29.6 10.1 27 136-164 291-317 (671)
217 PF14583 Pectate_lyase22: Olig 25.8 3.9E+02 0.0084 28.8 9.1 90 56-165 15-111 (386)
218 PF01453 B_lectin: D-mannose b 25.6 3.2E+02 0.0069 23.7 7.2 58 77-160 20-77 (114)
219 PF09826 Beta_propel: Beta pro 25.5 9.7E+02 0.021 26.7 14.9 32 239-272 328-362 (521)
220 KOG0286 G-protein beta subunit 25.4 8E+02 0.017 25.7 14.5 110 78-220 190-303 (343)
221 smart00284 OLF Olfactomedin-li 25.1 3.4E+02 0.0074 27.5 8.2 26 139-165 78-103 (255)
222 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.0 9.8E+02 0.021 26.6 16.0 18 138-155 390-407 (527)
223 PF13570 PQQ_3: PQQ-like domai 24.9 1.2E+02 0.0026 21.0 3.6 25 78-104 15-39 (40)
224 KOG2139 WD40 repeat protein [G 24.8 7.9E+02 0.017 26.6 10.9 125 78-221 284-432 (445)
225 PF11153 DUF2931: Protein of u 24.2 2.4E+02 0.0051 27.3 6.8 15 81-95 49-63 (216)
226 KOG1009 Chromatin assembly com 24.1 6.2E+02 0.014 27.5 10.1 30 136-165 125-154 (434)
227 KOG0640 mRNA cleavage stimulat 23.1 3.5E+02 0.0077 28.6 7.8 26 137-162 264-289 (430)
228 KOG1310 WD40 repeat protein [G 22.8 7.3E+02 0.016 28.3 10.5 118 78-221 54-179 (758)
229 KOG0268 Sof1-like rRNA process 22.5 5.2E+02 0.011 27.8 9.1 74 136-222 231-304 (433)
230 KOG2919 Guanine nucleotide-bin 22.5 6.8E+02 0.015 26.7 9.8 27 76-103 160-186 (406)
231 KOG0319 WD40-repeat-containing 22.5 7.1E+02 0.015 29.1 10.6 78 76-171 64-145 (775)
232 COG0823 TolB Periplasmic compo 22.2 7.5E+02 0.016 26.8 10.7 25 141-165 288-315 (425)
233 PRK10626 hypothetical protein; 22.2 2.6E+02 0.0056 28.2 6.6 11 80-90 48-58 (239)
234 KOG1963 WD40 repeat protein [G 22.0 1.1E+03 0.025 27.7 12.3 84 133-222 290-377 (792)
235 KOG0292 Vesicle coat complex C 21.9 1.3E+03 0.029 27.9 12.8 87 61-165 195-281 (1202)
236 KOG0265 U5 snRNP-specific prot 21.7 9.5E+02 0.021 25.2 11.6 71 78-165 51-121 (338)
237 KOG1407 WD40 repeat protein [F 21.4 9.2E+02 0.02 25.0 13.3 113 78-226 110-225 (313)
238 PRK12694 flgG flagellar basal 21.0 4.1E+02 0.0089 26.7 7.9 29 75-105 90-118 (260)
239 KOG2110 Uncharacterized conser 20.9 1.1E+03 0.023 25.5 12.6 70 138-222 177-250 (391)
240 KOG0275 Conserved WD40 repeat- 20.9 1E+03 0.022 25.3 11.3 77 137-219 351-432 (508)
241 KOG0639 Transducin-like enhanc 20.3 1.8E+02 0.0038 32.5 5.3 69 78-165 513-582 (705)
242 PF05567 Neisseria_PilC: Neiss 20.0 2.8E+02 0.0062 28.9 6.8 30 135-165 208-240 (335)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.70 E-value=4.7e-16 Score=181.13 Aligned_cols=142 Identities=34% Similarity=0.465 Sum_probs=117.6
Q ss_pred CccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEeccc------CCccccCCCCccccccCCcceEEEcCCC
Q 011435 74 GVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSF------QGYTGHVDGKPNEARFNHPKGVTMDDKG 146 (486)
Q Consensus 74 ~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~------~G~~G~~dG~~~~a~Ln~P~GIavD~dG 146 (486)
+..|.||+++++|+ |||+|..+++|++++.++. ...+++|.. ....|..+|....+.|++|.||++|++|
T Consensus 739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg---~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG 815 (1057)
T PLN02919 739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTG---GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG 815 (1057)
T ss_pred ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC---cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC
Confidence 46899999999987 9999999999999998743 234444421 1123434555556789999999999999
Q ss_pred CEEEEeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 147 NLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 147 ~LYVAD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
+|||||..|++|++||.++ +.+++|. +..||.||....+.|+.|.+|+ ++++|+|||+|.+|++|++|+++.
T Consensus 816 ~LYVADs~N~rIrviD~~tg~v~tiaG~--G~~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 816 QIYVADSYNHKIKKLDPATKRVTTLAGT--GKAGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred cEEEEECCCCEEEEEECCCCeEEEEecc--CCcCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCC
Confidence 9999999999999999876 7888875 5568888888889999999998 788999999999999999999975
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.66 E-value=3.2e-15 Score=174.22 Aligned_cols=143 Identities=27% Similarity=0.401 Sum_probs=112.9
Q ss_pred CccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435 74 GVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA 151 (486)
Q Consensus 74 ~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA 151 (486)
+.+|.||++|. +|+|||+|..+++|++++.+|. ....+|. .|..|..+|.+..+.|+.|.||++|++|+ ||||
T Consensus 567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~----~i~~ig~-~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVa 641 (1057)
T PLN02919 567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGN----FIVQIGS-TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVA 641 (1057)
T ss_pred CCCCceEEEECCCCeEEEEECCCCeEEEEeCCCC----EEEEEcc-CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEE
Confidence 36899999997 5789999999999999999853 3444443 35567778888889999999999999877 9999
Q ss_pred eCCCCEEEEEcCCC--ceEEcCCCCCCCC--cCCC-CccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 011435 152 DTLNLAIRKIGDAG--VTTIAGGKSNVAG--FRDG-PSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDD 223 (486)
Q Consensus 152 D~~n~rIrkid~~G--v~tiaGg~~g~~G--~~DG-~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~ 223 (486)
|+.|++|++||..+ +++++|.+ ..| +.+| ......|+.|++|++...++.|||+|.++++|++++.....
T Consensus 642 Dt~n~~Ir~id~~~~~V~tlag~G--~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 642 DTENHALREIDFVNETVRTLAGNG--TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred eCCCceEEEEecCCCEEEEEeccC--cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 99999999999765 78888752 222 2222 22234589999998544489999999999999999987543
No 3
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.48 E-value=1.6e-12 Score=127.08 Aligned_cols=116 Identities=22% Similarity=0.305 Sum_probs=88.1
Q ss_pred cCccceeEEEccCCeEEEEECCC--------CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC
Q 011435 73 IGVVPYKIRVSEDGELFAVDEVN--------SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD 144 (486)
Q Consensus 73 ~~~~P~GlAVd~dG~LYVaD~~n--------~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~ 144 (486)
....|+++++|++|+|||+|... ++|+++++++ ....+.. .|..|+||++++
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~----~~~~~~~----------------~~~~pNGi~~s~ 143 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG----KVTVVAD----------------GLGFPNGIAFSP 143 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS----EEEEEEE----------------EESSEEEEEEET
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC----eEEEEec----------------CcccccceEECC
Confidence 56789999999999999999865 5799999873 2333332 266899999999
Q ss_pred CCC-EEEEeCCCCEEEEEcCCC----c---eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEE
Q 011435 145 KGN-LYVADTLNLAIRKIGDAG----V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQ 216 (486)
Q Consensus 145 dG~-LYVAD~~n~rIrkid~~G----v---~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~ 216 (486)
+|+ |||+|+.+++|++++.+. + ..++... .....|.|++ +|.+|+|||++.++++|.+
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~g~pDG~~-vD~~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-------------GGPGYPDGLA-VDSDGNLWVADWGGGRIVV 209 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S-------------SSSCEEEEEE-EBTTS-EEEEEETTTEEEE
T ss_pred cchheeecccccceeEEEeccccccceeeeeeEEEcC-------------CCCcCCCcce-EcCCCCEEEEEcCCCEEEE
Confidence 997 999999999999998642 2 2222110 0013488897 8999999999999999999
Q ss_pred EECCCC
Q 011435 217 ISLNQD 222 (486)
Q Consensus 217 id~~G~ 222 (486)
++++|.
T Consensus 210 ~~p~G~ 215 (246)
T PF08450_consen 210 FDPDGK 215 (246)
T ss_dssp EETTSC
T ss_pred ECCCcc
Confidence 999986
No 4
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.42 E-value=3.2e-12 Score=144.60 Aligned_cols=209 Identities=23% Similarity=0.339 Sum_probs=137.3
Q ss_pred CCCCcEEEccCCcEEEEEecCc---------ccCccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCc--ccccEEEecc
Q 011435 50 QADGNVLQFENGYLVETVIEGN---------EIGVVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQ--YSRGRLVAGS 117 (486)
Q Consensus 50 ~~~gsvv~~~~G~~vetv~~G~---------~~~~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~--~~~~~~vaG~ 117 (486)
..+|+++.-+-+|+.+...+|+ ..-..-+-||+|| ||.|||+|+..++|+|+..-... -....+++|.
T Consensus 373 a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~ 452 (1899)
T KOG4659|consen 373 APDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD 452 (1899)
T ss_pred cCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc
Confidence 3456665444444444443433 2224557899998 99999999999999999642111 1235678886
Q ss_pred c------CCccccCCCC-ccccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC-ceEEcCCCCCC--C-CcCCC-Ccc
Q 011435 118 F------QGYTGHVDGK-PNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAGGKSNV--A-GFRDG-PSE 185 (486)
Q Consensus 118 ~------~G~~G~~dG~-~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G-v~tiaGg~~g~--~-G~~DG-~~~ 185 (486)
. ...|| ||. +.+|+|..|.||++|.+|+||+||. .+||+||.+| |+++.|..... + .+..+ ...
T Consensus 453 Ge~Clp~desCG--DGalA~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~ 528 (1899)
T KOG4659|consen 453 GEVCLPADESCG--DGALAQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLV 528 (1899)
T ss_pred CcCccccccccC--cchhcccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchh
Confidence 3 22366 565 6899999999999999999999995 7899999999 88888764322 0 11111 245
Q ss_pred ccccCCCceeEEEcCCCeEEEEeCC-------CCeEEEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCcc
Q 011435 186 DAKFSNDFDVVYVRPTCSLLVIDRG-------NAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGP 258 (486)
Q Consensus 186 ~a~f~~P~gIa~vd~~G~LYVaD~g-------n~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~ 258 (486)
+.+|..|+++|+.+-++.|||.|.. +++|+.|.-....|...+...... -.....++...-.+++ +..|-
T Consensus 529 ~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~s-kla~H~tl~~~r~Iav--g~~G~ 605 (1899)
T KOG4659|consen 529 DLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANATSSAS-KLADHRTLLIQRDIAV--GTDGA 605 (1899)
T ss_pred heeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCchhhh-hhhhhhhhhhhhceee--cCCce
Confidence 6688999999977778999999954 677776666666777765433222 2223334444444444 34444
Q ss_pred eEEeecC
Q 011435 259 FFFSRTQ 265 (486)
Q Consensus 259 ~~~a~~~ 265 (486)
++++.++
T Consensus 606 lyvaEsD 612 (1899)
T KOG4659|consen 606 LYVAESD 612 (1899)
T ss_pred EEEEecc
Confidence 4444443
No 5
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.29 E-value=2.1e-11 Score=138.13 Aligned_cols=139 Identities=24% Similarity=0.446 Sum_probs=112.2
Q ss_pred ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccC-----CccccCCCCccccccCCcceEEEcCCCCE
Q 011435 75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQ-----GYTGHVDGKPNEARFNHPKGVTMDDKGNL 148 (486)
Q Consensus 75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~-----G~~G~~dG~~~~a~Ln~P~GIavD~dG~L 148 (486)
-+|..||||| |+.|||.| +|-|++|+.+ .++++++|.+. +........+.++.+-.|..|||..+|.|
T Consensus 533 eWPT~LaV~Pmdnsl~Vld--~nvvlrit~~----~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~l 606 (1899)
T KOG4659|consen 533 EWPTSLAVDPMDNSLLVLD--TNVVLRITVV----HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGAL 606 (1899)
T ss_pred ecccceeecCCCCeEEEee--cceEEEEccC----ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceE
Confidence 6999999998 88899999 6899999998 56788888741 11112222346777888999999999999
Q ss_pred EEEeCCC---CEEEEEcCCC-ceEEcCCCCCCC--------CcC--CCCccccccCCCceeEEEcCCCeEEEEeCCCCeE
Q 011435 149 YVADTLN---LAIRKIGDAG-VTTIAGGKSNVA--------GFR--DGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAAL 214 (486)
Q Consensus 149 YVAD~~n---~rIrkid~~G-v~tiaGg~~g~~--------G~~--DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rI 214 (486)
|||+++. ||||++..+| +..+||..+.+. .|+ |..+.+|+|+.|..+| |.++|.|||||.+|-||
T Consensus 607 yvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~ala-VsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 607 YVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALA-VSPDGDVIIADSGNSRI 685 (1899)
T ss_pred EEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEE-ECCCCcEEEecCCchhh
Confidence 9999875 6789999999 899999865321 121 4578999999999998 89999999999999999
Q ss_pred EEEECC
Q 011435 215 RQISLN 220 (486)
Q Consensus 215 r~id~~ 220 (486)
+++...
T Consensus 686 r~Vs~~ 691 (1899)
T KOG4659|consen 686 RKVSAR 691 (1899)
T ss_pred hhhhhc
Confidence 988644
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.24 E-value=3.6e-10 Score=110.44 Aligned_cols=152 Identities=22% Similarity=0.312 Sum_probs=100.4
Q ss_pred ceeEEEc-cCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 77 PYKIRVS-EDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 77 P~GlAVd-~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
|.|++++ ++|.|||++..+ +.+++..+. ....++.... ....++.|+++++|++|+|||+|...
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g---~~~~~~~~~~----------~~~~~~~~ND~~vd~~G~ly~t~~~~ 106 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG--IAVVDPDTG---KVTVLADLPD----------GGVPFNRPNDVAVDPDGNLYVTDSGG 106 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC--EEEEETTTT---EEEEEEEEET----------TCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred CceEEEEccCCEEEEEEcCc--eEEEecCCC---cEEEEeeccC----------CCcccCCCceEEEcCCCCEEEEecCC
Confidence 9999999 789999999754 444476543 3454444211 01257889999999999999999865
Q ss_pred --------CEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 011435 156 --------LAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEY 226 (486)
Q Consensus 156 --------~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~ 226 (486)
++|+++++++ +..+.. .+..|+||++..+...|||+|+.+++|++++.+......
T Consensus 107 ~~~~~~~~g~v~~~~~~~~~~~~~~----------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~ 170 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPDGKVTVVAD----------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL 170 (246)
T ss_dssp BCTTCGGSEEEEEEETTSEEEEEEE----------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE
T ss_pred CccccccccceEEECCCCeEEEEec----------------CcccccceEECCcchheeecccccceeEEEeccccccce
Confidence 5799999997 555443 267899999655444799999999999999997431111
Q ss_pred cccCCCCcceEEE-EeeeeecceEeeeccCCcceEEeecCC
Q 011435 227 QYNSISPTDILMV-VGAVLVGYVTCMLQQGFGPFFFSRTQQ 266 (486)
Q Consensus 227 ~~~~~~~~~i~t~-~g~~~~Gy~l~l~~~~~g~~~~a~~~~ 266 (486)
. ....+ -.....|+...+..+..|+++++....
T Consensus 171 ~-------~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 171 S-------NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp E-------EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred e-------eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 0 01111 111112455555567888999987643
No 7
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.3e-08 Score=104.34 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=85.8
Q ss_pred CccceeEEEccCCeEEEEECC-----------CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEE
Q 011435 74 GVVPYKIRVSEDGELFAVDEV-----------NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTM 142 (486)
Q Consensus 74 ~~~P~GlAVd~dG~LYVaD~~-----------n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIav 142 (486)
.+.|+++.++++|.+||.|.. .+.|+++++.+.. .+.+.+ .+..|||||+
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~---~~l~~~----------------~~~~~NGla~ 170 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV---VRLLDD----------------DLTIPNGLAF 170 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE---EEeecC----------------cEEecCceEE
Confidence 488999999999999999987 2469999986432 333333 2568999999
Q ss_pred cCCCC-EEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-CeEEEEECC
Q 011435 143 DDKGN-LYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQISLN 220 (486)
Q Consensus 143 D~dG~-LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-~rIr~id~~ 220 (486)
++||. |||+|+..++|++++-+-. .+...+...+.+-. ..=..|-|++ +|.+|+||++...+ .+|.+++++
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~---~g~~~~~~~~~~~~---~~~G~PDG~~-vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPA---TGPIGGRRGFVDFD---EEPGLPDGMA-VDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcc---cCccCCcceEEEcc---CCCCCCCceE-EeCCCCEEEecccCCceEEEECCC
Confidence 99995 9999999999999976520 00000000110000 0012477887 89999999755555 499999999
Q ss_pred CC
Q 011435 221 QD 222 (486)
Q Consensus 221 G~ 222 (486)
|.
T Consensus 244 G~ 245 (307)
T COG3386 244 GK 245 (307)
T ss_pred Cc
Confidence 86
No 8
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.98 E-value=3.4e-08 Score=103.08 Aligned_cols=162 Identities=17% Similarity=0.233 Sum_probs=101.8
Q ss_pred CcEEEEEecCcccCccceeEEEccCCeEEEEECCC------------CEEEEEcC-CCC-cccccEEEecccCCccccCC
Q 011435 61 GYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVN------------SNIVKITP-PLS-QYSRGRLVAGSFQGYTGHVD 126 (486)
Q Consensus 61 G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n------------~rI~kid~-~g~-~~~~~~~vaG~~~G~~G~~d 126 (486)
|+.++.++++.. ...|.+|++|++|+|||++..+ ++|++++. ++. ...+.++++.
T Consensus 1 Gf~~~l~A~~p~-~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---------- 69 (367)
T TIGR02604 1 GFKVTLFAAEPL-LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---------- 69 (367)
T ss_pred CcEEEEEECCCc-cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec----------
Confidence 455666665533 4689999999999999998522 48888864 211 1112334443
Q ss_pred CCccccccCCcceEEEcCCCCEEEEeCCCCEEEEE-cCCC-------ceEEcCCCCCCCCcCCCCccccccCCCceeEEE
Q 011435 127 GKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKI-GDAG-------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV 198 (486)
Q Consensus 127 G~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrki-d~~G-------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v 198 (486)
.++.|+||++.++| |||++. .+|+++ +.++ .+.++.+.. .+. ......+++++ +
T Consensus 70 ------~l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~------~~~--~~~~~~~~~l~-~ 131 (367)
T TIGR02604 70 ------ELSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFG------GQI--NNHHHSLNSLA-W 131 (367)
T ss_pred ------CCCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccC------CCC--CcccccccCce-E
Confidence 26789999999998 999985 578888 4433 223332211 000 00123477887 7
Q ss_pred cCCCeEEEEeCCC-------------------CeEEEEECCCCceeecccCCCCcceEEEEeee-eecceEeeeccCCcc
Q 011435 199 RPTCSLLVIDRGN-------------------AALRQISLNQDDCEYQYNSISPTDILMVVGAV-LVGYVTCMLQQGFGP 258 (486)
Q Consensus 199 d~~G~LYVaD~gn-------------------~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~-~~Gy~l~l~~~~~g~ 258 (486)
+++|.|||++..+ +.|.++++++.. ..+.+.+ -.++++++. ..|.
T Consensus 132 gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-------------~e~~a~G~rnp~Gl~~d--~~G~ 196 (367)
T TIGR02604 132 GPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK-------------LRVVAHGFQNPYGHSVD--SWGD 196 (367)
T ss_pred CCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe-------------EEEEecCcCCCccceEC--CCCC
Confidence 8999999988732 467777777642 2233333 345777774 5678
Q ss_pred eEEeecCC
Q 011435 259 FFFSRTQQ 266 (486)
Q Consensus 259 ~~~a~~~~ 266 (486)
+++++.+.
T Consensus 197 l~~tdn~~ 204 (367)
T TIGR02604 197 VFFCDNDD 204 (367)
T ss_pred EEEEccCC
Confidence 88876643
No 9
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.8e-06 Score=90.83 Aligned_cols=119 Identities=20% Similarity=0.360 Sum_probs=89.3
Q ss_pred ccceeEEEccCC-eEEEEEC--CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEE
Q 011435 75 VVPYKIRVSEDG-ELFAVDE--VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV 150 (486)
Q Consensus 75 ~~P~GlAVd~dG-~LYVaD~--~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV 150 (486)
..|.+++++++| .+||+|. .++.|.+||..+...... ...|. .|.|+++|++|+ +||
T Consensus 116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~------------------~P~~~a~~p~g~~vyv 176 (381)
T COG3391 116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGN------------------TPTGVAVDPDGNKVYV 176 (381)
T ss_pred cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCC------------------CcceEEECCCCCeEEE
Confidence 369999999988 5999999 579999999875432111 22221 689999999999 999
Q ss_pred EeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-EEEEeCCC--CeEEEEECCCC
Q 011435 151 ADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDRGN--AALRQISLNQD 222 (486)
Q Consensus 151 AD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gn--~rIr~id~~G~ 222 (486)
+|..+++|..||..+....-+.. ......+..|.+++ ++++|. +||++..+ ++|.+++....
T Consensus 177 ~~~~~~~v~vi~~~~~~v~~~~~---------~~~~~~~~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 177 TNSDDNTVSVIDTSGNSVVRGSV---------GSLVGVGTGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred EecCCCeEEEEeCCCcceecccc---------ccccccCCCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 99999999999988733321110 01123467899998 677775 99999998 79999998864
No 10
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.64 E-value=6e-07 Score=89.62 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=97.3
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEe-cccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVA-GSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL 154 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~va-G~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 154 (486)
.|+.|+.++||.||+++...+.|-++|+.++ ++.++. |. | .+|.||.+++||+.||+|++
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tG---ev~~ypLg~-----G-----------a~Phgiv~gpdg~~Witd~~ 123 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATG---EVETYPLGS-----G-----------ASPHGIVVGPDGSAWITDTG 123 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCC---ceEEEecCC-----C-----------CCCceEEECCCCCeeEecCc
Confidence 4999999999999999999999999999864 344443 32 1 27999999999999999998
Q ss_pred CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceeecccCCC
Q 011435 155 NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEYQYNSIS 232 (486)
Q Consensus 155 n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~~~~~~~ 232 (486)
+ .|.|+|+.. ++++--.. ...++.|+.+ +.|+.|+||++... +---++|+...+.
T Consensus 124 ~-aI~R~dpkt~evt~f~lp~---------~~a~~nlet~----vfD~~G~lWFt~q~-G~yGrLdPa~~~i-------- 180 (353)
T COG4257 124 L-AIGRLDPKTLEVTRFPLPL---------EHADANLETA----VFDPWGNLWFTGQI-GAYGRLDPARNVI-------- 180 (353)
T ss_pred c-eeEEecCcccceEEeeccc---------ccCCCcccce----eeCCCccEEEeecc-ccceecCcccCce--------
Confidence 7 999999865 66663321 1122334332 47999999999863 3333455443211
Q ss_pred CcceEEEEeeeeecceEeeeccCCcceEEeecC
Q 011435 233 PTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQ 265 (486)
Q Consensus 233 ~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~ 265 (486)
-+..+--+.-+|++|.. -.|.++.+.+.
T Consensus 181 ---~vfpaPqG~gpyGi~at--pdGsvwyasla 208 (353)
T COG4257 181 ---SVFPAPQGGGPYGICAT--PDGSVWYASLA 208 (353)
T ss_pred ---eeeccCCCCCCcceEEC--CCCcEEEEecc
Confidence 11112223345888884 56777777664
No 11
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1.7e-06 Score=88.78 Aligned_cols=129 Identities=17% Similarity=0.251 Sum_probs=83.8
Q ss_pred CCCCcEEEccCCcEEEEEecCcccCccceeEEEccCC-eEEEEECCCCEEEEEcCC---CCccccc-EEEecccCCcccc
Q 011435 50 QADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDG-ELFAVDEVNSNIVKITPP---LSQYSRG-RLVAGSFQGYTGH 124 (486)
Q Consensus 50 ~~~gsvv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG-~LYVaD~~n~rI~kid~~---g~~~~~~-~~vaG~~~G~~G~ 124 (486)
...++++.+..+..++++..+. ...|+|||+++|| .||++|+..++|++++.+ +...+.. .+... ...
T Consensus 140 ~~~G~lyr~~p~g~~~~l~~~~--~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~---~~~-- 212 (307)
T COG3386 140 RPTGSLYRVDPDGGVVRLLDDD--LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFD---EEP-- 212 (307)
T ss_pred CCcceEEEEcCCCCEEEeecCc--EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEcc---CCC--
Confidence 3456788877444444444442 2359999999999 599999999999999876 2221111 11111 011
Q ss_pred CCCCccccccCCcceEEEcCCCCEEEEeCCC-CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCC
Q 011435 125 VDGKPNEARFNHPKGVTMDDKGNLYVADTLN-LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPT 201 (486)
Q Consensus 125 ~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n-~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~ 201 (486)
-.|.|+++|.+|+||++-..+ .+|.+++++| +..+.-- -..|..+++-.++
T Consensus 213 ----------G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP----------------~~~~t~~~FgG~~ 266 (307)
T COG3386 213 ----------GLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLP----------------VKRPTNPAFGGPD 266 (307)
T ss_pred ----------CCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECC----------------CCCCccceEeCCC
Confidence 269999999999999655444 4999999999 4444321 1245566655543
Q ss_pred -CeEEEEeCCC
Q 011435 202 -CSLLVIDRGN 211 (486)
Q Consensus 202 -G~LYVaD~gn 211 (486)
+.|||+-...
T Consensus 267 ~~~L~iTs~~~ 277 (307)
T COG3386 267 LNTLYITSARS 277 (307)
T ss_pred cCEEEEEecCC
Confidence 4788887655
No 12
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.57 E-value=1.3e-06 Score=91.39 Aligned_cols=124 Identities=14% Similarity=0.225 Sum_probs=83.9
Q ss_pred EEEecCcccCccceeEEEccCCeEEEEECCCCEEEEE-cCCCC--cccccEEEecccCCccccCCCCccccccCCcceEE
Q 011435 65 ETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKI-TPPLS--QYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVT 141 (486)
Q Consensus 65 etv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~ki-d~~g~--~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIa 141 (486)
+.+.++ +..|.||++.++| |||++. .+|+++ +.++. ..+..++++....... ......+++++
T Consensus 65 ~vfa~~---l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~--------~~~~~~~~~l~ 130 (367)
T TIGR02604 65 NVFAEE---LSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQI--------NNHHHSLNSLA 130 (367)
T ss_pred EEeecC---CCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCC--------CcccccccCce
Confidence 444444 3469999999998 999974 478888 44432 2223344443211100 00134689999
Q ss_pred EcCCCCEEEEeCCC-------------------CEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcC
Q 011435 142 MDDKGNLYVADTLN-------------------LAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP 200 (486)
Q Consensus 142 vD~dG~LYVAD~~n-------------------~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~ 200 (486)
+++||.|||++..+ +.|++++++| +..++.+ +.+|+|++ .++
T Consensus 131 ~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G----------------~rnp~Gl~-~d~ 193 (367)
T TIGR02604 131 WGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG----------------FQNPYGHS-VDS 193 (367)
T ss_pred ECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC----------------cCCCccce-ECC
Confidence 99999999988732 5689999887 5555543 67899998 688
Q ss_pred CCeEEEEeCCCCeEEEEEC
Q 011435 201 TCSLLVIDRGNAALRQISL 219 (486)
Q Consensus 201 ~G~LYVaD~gn~rIr~id~ 219 (486)
+|+||++|.++....++..
T Consensus 194 ~G~l~~tdn~~~~~~~i~~ 212 (367)
T TIGR02604 194 WGDVFFCDNDDPPLCRVTP 212 (367)
T ss_pred CCCEEEEccCCCceeEEcc
Confidence 9999999987766555553
No 13
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.54 E-value=4.7e-07 Score=93.98 Aligned_cols=148 Identities=18% Similarity=0.281 Sum_probs=102.0
Q ss_pred ccceeEEEccCC-eEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435 75 VVPYKIRVSEDG-ELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT 153 (486)
Q Consensus 75 ~~P~GlAVd~dG-~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~ 153 (486)
-.|-||+++..| +|||||..- -+++|++.|.. ...+++.. +| ..+...+++.||++|.||++|+
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~---a~~l~~~~-------~G----~~~kf~N~ldI~~~g~vyFTDS 179 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGL---AELLADEA-------EG----KPFKFLNDLDIDPEGVVYFTDS 179 (376)
T ss_pred CCcceEEeccCCCeEEEEecce-eeEEECCCCCc---ceeccccc-------cC----eeeeecCceeEcCCCeEEEecc
Confidence 479999999876 899999765 58999998754 44555432 22 2456678999999999999998
Q ss_pred C-----------------CCEEEEEcCCC-c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeE
Q 011435 154 L-----------------NLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAAL 214 (486)
Q Consensus 154 ~-----------------n~rIrkid~~G-v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rI 214 (486)
. ++|+.++|+.. + +.+. ..|..|+|+++..+...|.|++....||
T Consensus 180 Ssk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl----------------d~L~F~NGlaLS~d~sfvl~~Et~~~ri 243 (376)
T KOG1520|consen 180 SSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL----------------DGLYFPNGLALSPDGSFVLVAETTTARI 243 (376)
T ss_pred ccccchhheEEeeecCCCccceEEecCcccchhhhh----------------hcccccccccCCCCCCEEEEEeecccee
Confidence 5 34555665554 2 2222 2377899999666666899999999999
Q ss_pred EEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCcceEEee
Q 011435 215 RQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSR 263 (486)
Q Consensus 215 r~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~ 263 (486)
.++-+.|.... -..+...++.||...+-.+.-|..+++-
T Consensus 244 ~rywi~g~k~g----------t~EvFa~~LPG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 244 KRYWIKGPKAG----------TSEVFAEGLPGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred eeeEecCCccC----------chhhHhhcCCCCCcceeECCCCCEEEEE
Confidence 99999985220 0123333456666555555555555543
No 14
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.50 E-value=1.4e-07 Score=62.78 Aligned_cols=28 Identities=46% Similarity=0.815 Sum_probs=26.4
Q ss_pred cCCcceEEEcCCCCEEEEeCCCCEEEEE
Q 011435 134 FNHPKGVTMDDKGNLYVADTLNLAIRKI 161 (486)
Q Consensus 134 Ln~P~GIavD~dG~LYVAD~~n~rIrki 161 (486)
|+.|.|||+|++|+|||||+.|+||++|
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5789999999999999999999999986
No 15
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.40 E-value=1.2e-05 Score=80.63 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=103.2
Q ss_pred CccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEE---------------------EecccCCccccCCCCc---
Q 011435 74 GVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRL---------------------VAGSFQGYTGHVDGKP--- 129 (486)
Q Consensus 74 ~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~---------------------vaG~~~G~~G~~dG~~--- 129 (486)
+..|+||.+++||..||+|..+ .|.|+++......+..+ +.|+ .|..|.-|=..
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i 180 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVI 180 (353)
T ss_pred CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccceecCcccCce
Confidence 3579999999999999999987 89999985432111111 0111 12222111000
Q ss_pred ---cccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEE
Q 011435 130 ---NEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLL 205 (486)
Q Consensus 130 ---~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LY 205 (486)
...+=..|+|||+.+||.+|++....+.|.+||+-. ...+.-..+ + .-+.-..| .+|+.|.+|
T Consensus 181 ~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~-------~-----~~~gsRri-wsdpig~~w 247 (353)
T COG4257 181 SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPN-------A-----LKAGSRRI-WSDPIGRAW 247 (353)
T ss_pred eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCC-------c-----cccccccc-ccCccCcEE
Confidence 011123689999999999999999999999999754 211111100 0 00011234 489999999
Q ss_pred EEeCCCCeEEEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCcceEEeecCCCC
Q 011435 206 VIDRGNAALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPS 268 (486)
Q Consensus 206 VaD~gn~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~~~~ 268 (486)
+++.+++++.+|++.-.. .+-.-+-|...-+|.+-+ |..|-+++++.+...
T Consensus 248 ittwg~g~l~rfdPs~~s----------W~eypLPgs~arpys~rV--D~~grVW~sea~aga 298 (353)
T COG4257 248 ITTWGTGSLHRFDPSVTS----------WIEYPLPGSKARPYSMRV--DRHGRVWLSEADAGA 298 (353)
T ss_pred EeccCCceeeEeCccccc----------ceeeeCCCCCCCcceeee--ccCCcEEeeccccCc
Confidence 999999999999987431 111122334445566444 777778877776533
No 16
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.36 E-value=3.2e-05 Score=79.98 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=81.8
Q ss_pred CccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435 74 GVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA 151 (486)
Q Consensus 74 ~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA 151 (486)
+..|..|++++||. +||++...+.|.+++.+... +..+.+........+. . .-+.|.+|++++||+ |||+
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~-~------~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGF-T------GENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTS-C------SSSSEEEEEE-TTSSEEEEE
T ss_pred CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccc-c------ccCCceeEEEecCCCEEEEE
Confidence 46799999999987 99999999999888765211 1222211110000010 1 124799999999998 9999
Q ss_pred eCCCCEEEEEcCC---C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 152 DTLNLAIRKIGDA---G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 152 D~~n~rIrkid~~---G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
+.+.+.|..|+.+ | ++.+.--. ..-..|.++++..+...|||++...+.|..|+.+.
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~-------------~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVP-------------TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEE-------------ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred eccCCEEEEEEEecCCCceEEEEEEe-------------CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 9999998887642 3 33321100 00135899985444457999999999999988764
No 17
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.36 E-value=1.5e-06 Score=73.59 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=52.6
Q ss_pred eeEEEccC-CeEEEEEC-----------------CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcce
Q 011435 78 YKIRVSED-GELFAVDE-----------------VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKG 139 (486)
Q Consensus 78 ~GlAVd~d-G~LYVaD~-----------------~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~G 139 (486)
++|+|+.+ |.|||+|+ .++|++++++.+. +.++++.. |..|+|
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~---~~~vl~~~----------------L~fpNG 61 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK---ETTVLLDG----------------LYFPNG 61 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT---EEEEEEEE----------------ESSEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC---eEEEehhC----------------CCccCe
Confidence 47899998 99999996 3479999999864 35666653 778999
Q ss_pred EEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 011435 140 VTMDDKGN-LYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 140 IavD~dG~-LYVAD~~n~rIrkid~~G 165 (486)
|++++|+. |+||++..+||.|+-..|
T Consensus 62 Vals~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 62 VALSPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred EEEcCCCCEEEEEeccCceEEEEEEeC
Confidence 99999999 999999999999986544
No 18
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=1.9e-05 Score=83.14 Aligned_cols=139 Identities=20% Similarity=0.230 Sum_probs=98.9
Q ss_pred cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccc
Q 011435 54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEA 132 (486)
Q Consensus 54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a 132 (486)
++++...+.+..++..|. .|.+++++++|+ +|++|..+++|..|+.++.. +.-+... ....
T Consensus 143 svid~~t~~~~~~~~vG~----~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~-----v~~~~~~---------~~~~ 204 (381)
T COG3391 143 SVIDAATNKVTATIPVGN----TPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS-----VVRGSVG---------SLVG 204 (381)
T ss_pred EEEeCCCCeEEEEEecCC----CcceEEECCCCCeEEEEecCCCeEEEEeCCCcc-----eeccccc---------cccc
Confidence 446666677777766665 489999999999 99999999999999976422 1102100 0123
Q ss_pred ccCCcceEEEcCCCC-EEEEeCCC--CEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435 133 RFNHPKGVTMDDKGN-LYVADTLN--LAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR 209 (486)
Q Consensus 133 ~Ln~P~GIavD~dG~-LYVAD~~n--~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~ 209 (486)
.+..|.+++++++|+ +||++..+ +.|.++|...-..++... ....+ .|.++++.+....+||++.
T Consensus 205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~-----------~~~~~-~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL-----------PVGSG-APRGVAVDPAGKAAYVANS 272 (381)
T ss_pred cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc-----------ccccC-CCCceeECCCCCEEEEEec
Confidence 466899999999999 99999987 699999977621111110 11234 6888886555558999999
Q ss_pred CCCeEEEEECCCC
Q 011435 210 GNAALRQISLNQD 222 (486)
Q Consensus 210 gn~rIr~id~~G~ 222 (486)
..+.+..++....
T Consensus 273 ~~~~V~vid~~~~ 285 (381)
T COG3391 273 QGGTVSVIDGATD 285 (381)
T ss_pred CCCeEEEEeCCCC
Confidence 9899999998753
No 19
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.29 E-value=1.5e-05 Score=82.44 Aligned_cols=125 Identities=19% Similarity=0.271 Sum_probs=81.6
Q ss_pred CccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435 74 GVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA 151 (486)
Q Consensus 74 ~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA 151 (486)
...|+.+.+++||+ |||+|.+.++|++++.+... +.... .....-..| ..|..|+++++|+ +||+
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~-~~l~~-~~~~~~~~G-----------~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT-GKLTP-VDSIKVPPG-----------SGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEE-EEEEECSTT-----------SSEEEEEE-TTSSEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC-ceEEE-eeccccccC-----------CCCcEEEEcCCcCEEEEe
Confidence 35789999999987 99999999999998876432 11111 111000111 2699999999998 9999
Q ss_pred eCCCCEEEEEcCC---C-ce---EEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 152 DTLNLAIRKIGDA---G-VT---TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 152 D~~n~rIrkid~~---G-v~---tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
+...+.|..++.+ | ++ ++.-.. .++. .-+.|.+|++..+...|||++++.+.|..|+++.
T Consensus 210 ~e~s~~v~v~~~~~~~g~~~~~~~~~~~~---~~~~-------~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 210 NELSNTVSVFDYDPSDGSLTEIQTISTLP---EGFT-------GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEEESCE---TTSC-------SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred cCCCCcEEEEeecccCCceeEEEEeeecc---cccc-------ccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 9999999888644 3 22 222110 0111 1136889985444447999999999999999864
No 20
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.25 E-value=4.7e-06 Score=92.48 Aligned_cols=117 Identities=19% Similarity=0.166 Sum_probs=90.5
Q ss_pred CccceeEEEccCC-eEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEE
Q 011435 74 GVVPYKIRVSEDG-ELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVA 151 (486)
Q Consensus 74 ~~~P~GlAVd~dG-~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVA 151 (486)
+.+|+|||||--+ ++|.+|+.+.+|-+-.++|+. .++.+.. .|-+|.+|++|+ .|+||-+
T Consensus 1067 L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~-rkvLf~t-----------------dLVNPR~iv~D~~rgnLYwt 1128 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE-RKVLFYT-----------------DLVNPRAIVVDPIRGNLYWT 1128 (1289)
T ss_pred CCCccceeeeeccceeeeeccccchhheeecCCce-eeEEEee-----------------cccCcceEEeecccCceeec
Confidence 4689999999654 599999999999988888764 2222222 266899999999 8899999
Q ss_pred eCC--CCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 152 DTL--NLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 152 D~~--n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
|+. |-.|-..+.|| -..|.-. ..+..|+|+.+..-...|-.+|.+|+|+.-+..+|.
T Consensus 1129 DWnRenPkIets~mDG~NrRilin--------------~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~ 1188 (1289)
T KOG1214|consen 1129 DWNRENPKIETSSMDGENRRILIN--------------TDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT 1188 (1289)
T ss_pred cccccCCcceeeccCCccceEEee--------------cccCCCCCceeCcccceeeEEecCCcceeEecCCCC
Confidence 986 66788888888 3333221 225569999976667788899999999999999974
No 21
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.16 E-value=6.6e-06 Score=69.67 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=51.6
Q ss_pred ceEEEcCC-CCEEEEeCC-----------------CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEE
Q 011435 138 KGVTMDDK-GNLYVADTL-----------------NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVY 197 (486)
Q Consensus 138 ~GIavD~d-G~LYVAD~~-----------------n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~ 197 (486)
++|+|+.+ |.||++|.. ++|+.++|+.. ++.++.+ |..|+||++
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~----------------L~fpNGVal 64 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG----------------LYFPNGVAL 64 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE----------------ESSEEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC----------------CCccCeEEE
Confidence 58999998 999999984 57999999988 5566654 778999995
Q ss_pred EcCCCeEEEEeCCCCeEEEEECCC
Q 011435 198 VRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 198 vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
..+...|+|++...+||.|+-+.|
T Consensus 65 s~d~~~vlv~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 65 SPDESFVLVAETGRYRILRYWLKG 88 (89)
T ss_dssp -TTSSEEEEEEGGGTEEEEEESSS
T ss_pred cCCCCEEEEEeccCceEEEEEEeC
Confidence 444446999999999999999876
No 22
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.11 E-value=0.00016 Score=73.54 Aligned_cols=125 Identities=13% Similarity=0.101 Sum_probs=78.2
Q ss_pred ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecc-cCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435 75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGS-FQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA 151 (486)
Q Consensus 75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~-~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA 151 (486)
..|++++++++|+ |||++...+.|..++.+.. +........ .....| ..|.+++++++|. |||+
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~--g~l~~~~~~~~~~~~g-----------~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD--GHLVAQEPAEVTTVEG-----------AGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC--CcccccCCCceecCCC-----------CCCceEEECCCCCEEEEE
Confidence 4689999999986 8999999999999987531 111000000 000001 2599999999998 8999
Q ss_pred eCCCCEEEEEcCC---C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECC
Q 011435 152 DTLNLAIRKIGDA---G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLN 220 (486)
Q Consensus 152 D~~n~rIrkid~~---G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~ 220 (486)
+...+.|..++.+ | ++.+ ......+ ... ..-..|.++++ +++| .|||+++..+.|..|+.+
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~-~~~~~~p---~~~---~~~~~~~~i~~-~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECV-QTLDMMP---ADF---SDTRWAADIHI-TPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEE-EEEecCC---CcC---CCCccceeEEE-CCCCCEEEEecCCCCeEEEEEEe
Confidence 9988999887753 3 2221 1100000 000 00124556774 4555 699999999999998875
No 23
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.11 E-value=4.6e-06 Score=55.51 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=25.2
Q ss_pred ccceeEEEccCCeEEEEECCCCEEEEE
Q 011435 75 VVPYKIRVSEDGELFAVDEVNSNIVKI 101 (486)
Q Consensus 75 ~~P~GlAVd~dG~LYVaD~~n~rI~ki 101 (486)
..|.||+++++|+|||+|.+||||.++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 469999999999999999999999885
No 24
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.06 E-value=6.6e-05 Score=76.38 Aligned_cols=121 Identities=12% Similarity=0.068 Sum_probs=79.8
Q ss_pred ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435 75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD 152 (486)
Q Consensus 75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD 152 (486)
..|.+|+++++|+ ||++....+.|..++.+.. +......... .....|.+++++++|+ |||++
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~~~-------------~~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKD--GIPVAPIQII-------------EGLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCC--CCCCCceeec-------------cCCCcccEeEeCCCCCEEEEee
Confidence 3699999999997 8999888888888876421 1111111110 0124689999999987 89999
Q ss_pred CCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435 153 TLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220 (486)
Q Consensus 153 ~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~ 220 (486)
.+.+.|..+|.+. +....... .. . ..=..|.++++......|||++...+.|..++.+
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~--~~-~-------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAE--VT-T-------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCc--ee-c-------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 9999999987543 21100000 00 0 0013488898654445799999999999999986
No 25
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.01 E-value=9.7e-05 Score=82.44 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=90.0
Q ss_pred CccceeEEEcc-CCeEEEEECC--CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EE
Q 011435 74 GVVPYKIRVSE-DGELFAVDEV--NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LY 149 (486)
Q Consensus 74 ~~~P~GlAVd~-dG~LYVaD~~--n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY 149 (486)
+.+|.+|++|+ .|+||.+|+. |-.|-+.++||.. -++++.. .+.-|+||++|+.-. |-
T Consensus 1110 LVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~N---rRilin~---------------DigLPNGLtfdpfs~~LC 1171 (1289)
T KOG1214|consen 1110 LVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGEN---RRILINT---------------DIGLPNGLTFDPFSKLLC 1171 (1289)
T ss_pred ccCcceEEeecccCceeeccccccCCcceeeccCCcc---ceEEeec---------------ccCCCCCceeCcccceee
Confidence 56899999998 7889999984 5569999998753 3444442 245799999999765 88
Q ss_pred EEeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 011435 150 VADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDC 224 (486)
Q Consensus 150 VAD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~ 224 (486)
-+|.+++|+--+.++| -.++. ..|.+|++|+ .+. .++|.+|+..++|.-+++.+...
T Consensus 1172 WvDAGt~rleC~~p~g~gRR~i~----------------~~LqYPF~it-sy~-~~fY~TDWk~n~vvsv~~~~~~~ 1230 (1289)
T KOG1214|consen 1172 WVDAGTKRLECTLPDGTGRRVIQ----------------NNLQYPFSIT-SYA-DHFYHTDWKRNGVVSVNKHSGQF 1230 (1289)
T ss_pred EEecCCcceeEecCCCCcchhhh----------------hcccCceeee-ecc-ccceeeccccCceEEeecccccc
Confidence 9999999999999998 23332 2378999997 444 45999999999999999987533
No 26
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=97.92 E-value=0.00026 Score=73.90 Aligned_cols=98 Identities=22% Similarity=0.341 Sum_probs=66.1
Q ss_pred CCcceEEEcCCC-CEEEEeCCCCEEEEEcCCC-c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC
Q 011435 135 NHPKGVTMDDKG-NLYVADTLNLAIRKIGDAG-V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN 211 (486)
Q Consensus 135 n~P~GIavD~dG-~LYVAD~~n~rIrkid~~G-v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn 211 (486)
.+|.||+++..| +|||||.+ --+.+|++.| . +.++... ....+...+++. ++++|.||++|+..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~-----------~G~~~kf~N~ld-I~~~g~vyFTDSSs 181 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEA-----------EGKPFKFLNDLD-IDPEGVVYFTDSSS 181 (376)
T ss_pred CCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccc-----------cCeeeeecCcee-EcCCCeEEEecccc
Confidence 389999999987 89999986 5688999988 4 3333321 224466677887 56799999999764
Q ss_pred -----------------CeEEEEECCCCceeecccCCCCcceEEEEeeeeecceEeeeccCCc
Q 011435 212 -----------------AALRQISLNQDDCEYQYNSISPTDILMVVGAVLVGYVTCMLQQGFG 257 (486)
Q Consensus 212 -----------------~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g 257 (486)
+|+.++|+... ....+...+.|..++++..++--
T Consensus 182 k~~~rd~~~a~l~g~~~GRl~~YD~~tK------------~~~VLld~L~F~NGlaLS~d~sf 232 (376)
T KOG1520|consen 182 KYDRRDFVFAALEGDPTGRLFRYDPSTK------------VTKVLLDGLYFPNGLALSPDGSF 232 (376)
T ss_pred ccchhheEEeeecCCCccceEEecCccc------------chhhhhhcccccccccCCCCCCE
Confidence 44444444432 11234555678888888765543
No 27
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.74 E-value=0.004 Score=60.40 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=75.8
Q ss_pred cceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435 76 VPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT 153 (486)
Q Consensus 76 ~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~ 153 (486)
.|..++++++|. ||++....+.|..++..... ....+.... .+. ...-..|.+|+++++|+ +|++..
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--~~~~~~~~~---~~~------~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--VIKKITFEI---PGV------HPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--eeeeeeecc---ccc------ccccCCccceEECCCCCEEEEEcC
Confidence 578899999998 56665557789999986432 011111100 000 00112588999999998 689887
Q ss_pred CCCEEEEEcCCC--ce-EEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 154 LNLAIRKIGDAG--VT-TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 154 ~n~rIrkid~~G--v~-tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
.+++|.++|... +. .+..+ ..+.++++......||++...++.|.+++....
T Consensus 227 ~~~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 227 PANRVAVVDAKTYEVLDYLLVG-----------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CCCeEEEEECCCCcEEEEEEeC-----------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 788999998765 22 22111 135678754444467777777889999999864
No 28
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.72 E-value=0.0042 Score=67.13 Aligned_cols=93 Identities=15% Similarity=0.248 Sum_probs=61.8
Q ss_pred EccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCC
Q 011435 57 QFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136 (486)
Q Consensus 57 ~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~ 136 (486)
....++.++++++| +..|.+|++.+||+|||+....++|++++.++. ....+.+.. .. ........
T Consensus 15 ~~p~~f~~~~va~G---L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~---~~~~~~~l~-~v-------~~~~ge~G 80 (454)
T TIGR03606 15 AASENFDKKVLLSG---LNKPWALLWGPDNQLWVTERATGKILRVNPETG---EVKVVFTLP-EI-------VNDAQHNG 80 (454)
T ss_pred cCCCCcEEEEEECC---CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC---ceeeeecCC-ce-------eccCCCCc
Confidence 34567788888876 457999999999999999987789999986542 122333321 00 00011346
Q ss_pred cceEEEcCCC-------CEEEEeCC---------CCEEEEEcC
Q 011435 137 PKGVTMDDKG-------NLYVADTL---------NLAIRKIGD 163 (486)
Q Consensus 137 P~GIavD~dG-------~LYVAD~~---------n~rIrkid~ 163 (486)
+.|||++++- .|||+-+. ..+|.|+..
T Consensus 81 Llglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l 123 (454)
T TIGR03606 81 LLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTY 123 (454)
T ss_pred eeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEe
Confidence 7899998753 59998421 467877753
No 29
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.67 E-value=0.0029 Score=66.62 Aligned_cols=136 Identities=18% Similarity=0.276 Sum_probs=82.0
Q ss_pred cEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccc
Q 011435 54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEA 132 (486)
Q Consensus 54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a 132 (486)
.+++......+.++..|.. -+.++++.+||. +||++. .+.|.+||+..... ..++-+|.
T Consensus 19 ~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~-v~~i~~G~--------------- 78 (369)
T PF02239_consen 19 AVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKV-VATIKVGG--------------- 78 (369)
T ss_dssp EEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSE-EEEEE-SS---------------
T ss_pred EEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcC-CCeEEEEECCcccE-EEEEecCC---------------
Confidence 4567777778888776543 156688889997 999975 57999999975431 11222332
Q ss_pred ccCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEe
Q 011435 133 RFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVID 208 (486)
Q Consensus 133 ~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD 208 (486)
.|.||++++||+ |||++...+.|..+|... +.+|..+... . ++ .-++..+|.........+|+-
T Consensus 79 ---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~--~--~~-----~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 79 ---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP--V--DG-----PESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp ---EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE---T--TT-----S---EEEEEE-SSSSEEEEEE
T ss_pred ---CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccc--c--cc-----cCCCceeEEecCCCCEEEEEE
Confidence 589999999998 999999999999999776 4555332100 0 00 112344564333333455556
Q ss_pred CCCCeEEEEECCC
Q 011435 209 RGNAALRQISLNQ 221 (486)
Q Consensus 209 ~gn~rIr~id~~G 221 (486)
...++|+.++...
T Consensus 147 kd~~~I~vVdy~d 159 (369)
T PF02239_consen 147 KDTGEIWVVDYSD 159 (369)
T ss_dssp TTTTEEEEEETTT
T ss_pred ccCCeEEEEEecc
Confidence 7778899888653
No 30
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.41 E-value=0.0017 Score=67.30 Aligned_cols=163 Identities=13% Similarity=0.062 Sum_probs=88.0
Q ss_pred ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCC----CCEEE
Q 011435 75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK----GNLYV 150 (486)
Q Consensus 75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d----G~LYV 150 (486)
..|.+|++.+||.|||++. .++|++++.++.. ...+..... . .........|||++++ +.|||
T Consensus 2 ~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~---~~~v~~~~~-v--------~~~~~~gllgia~~p~f~~n~~lYv 68 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSL---KTPVADLPE-V--------FADGERGLLGIAFHPDFASNGYLYV 68 (331)
T ss_dssp SSEEEEEEETTSCEEEEET-TTEEEEEETTTEE---CEEEEE-TT-T--------BTSTTBSEEEEEE-TTCCCC-EEEE
T ss_pred CCceEEEEeCCCcEEEEeC-CceEEEEeCCCcC---cceeccccc-c--------cccccCCcccceeccccCCCCEEEE
Confidence 4699999999999999998 8899999976532 122322110 0 0111235789999994 78999
Q ss_pred EeCCC--------CEEEEEcC--CC-----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC------
Q 011435 151 ADTLN--------LAIRKIGD--AG-----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR------ 209 (486)
Q Consensus 151 AD~~n--------~rIrkid~--~G-----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~------ 209 (486)
+-+.. .+|.++.. +. .+++....... ....-.-..|+ ++++|.|||+--
T Consensus 69 ~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~---------~~~~H~g~~l~-fgpDG~LYvs~G~~~~~~ 138 (331)
T PF07995_consen 69 YYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDT---------SSGNHNGGGLA-FGPDGKLYVSVGDGGNDD 138 (331)
T ss_dssp EEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES----------CSSSS-EEEEE-E-TTSEEEEEEB-TTTGG
T ss_pred EEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCC---------CCCCCCCcccc-CCCCCcEEEEeCCCCCcc
Confidence 98742 46766643 21 12222111100 00011123465 789999999852
Q ss_pred -------CCCeEEEEECCCCceee---cccCCCCcceEEEEeeee-ecceEeeeccCC-cceEEeecC
Q 011435 210 -------GNAALRQISLNQDDCEY---QYNSISPTDILMVVGAVL-VGYVTCMLQQGF-GPFFFSRTQ 265 (486)
Q Consensus 210 -------gn~rIr~id~~G~~~~~---~~~~~~~~~i~t~~g~~~-~Gy~l~l~~~~~-g~~~~a~~~ 265 (486)
..+.|.+|+.+|..-.- .+...... .+.+.++ ..+.+++ +.. |.+++++..
T Consensus 139 ~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~---~i~A~GlRN~~~~~~--d~~tg~l~~~d~G 201 (331)
T PF07995_consen 139 NAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADS---EIYAYGLRNPFGLAF--DPNTGRLWAADNG 201 (331)
T ss_dssp GGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTT---TEEEE--SEEEEEEE--ETTTTEEEEEEE-
T ss_pred cccccccccceEEEecccCcCCCCCccccCCCceE---EEEEeCCCccccEEE--ECCCCcEEEEccC
Confidence 24679999998851110 00001111 2233333 4466666 444 888887653
No 31
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.40 E-value=0.0079 Score=62.24 Aligned_cols=147 Identities=16% Similarity=0.261 Sum_probs=87.9
Q ss_pred cCccceeEEEccCCe-EEEEECCCCEEEEEcCCC--CcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E
Q 011435 73 IGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPL--SQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L 148 (486)
Q Consensus 73 ~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g--~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L 148 (486)
.+..|.-|++-++|. .|+..--++.|.++.-+. ..+....++.--...+.| -+.-..|.+++||. |
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g----------~~~~aaIhis~dGrFL 258 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG----------TNWAAAIHISPDGRFL 258 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC----------CCceeEEEECCCCCEE
Confidence 346799999999999 799888888877665543 221122222221222222 23446899999999 9
Q ss_pred EEEeCCCCEEE--EEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 011435 149 YVADTLNLAIR--KIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCE 225 (486)
Q Consensus 149 YVAD~~n~rIr--kid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~ 225 (486)
|++|++-+.|. ++|+++ ...+.+.-+ ..+ ..|.+..+.....-|+++....+.|.+|..+..
T Consensus 259 YasNRg~dsI~~f~V~~~~g~L~~~~~~~----------teg--~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~--- 323 (346)
T COG2706 259 YASNRGHDSIAVFSVDPDGGKLELVGITP----------TEG--QFPRDFNINPSGRFLIAANQKSDNITVFERDKE--- 323 (346)
T ss_pred EEecCCCCeEEEEEEcCCCCEEEEEEEec----------cCC--cCCccceeCCCCCEEEEEccCCCcEEEEEEcCC---
Confidence 99999988766 456765 322222110 111 236666644555567777777777888777653
Q ss_pred ecccCCCCcceEEEEee-eeecceEeee
Q 011435 226 YQYNSISPTDILMVVGA-VLVGYVTCML 252 (486)
Q Consensus 226 ~~~~~~~~~~i~t~~g~-~~~Gy~l~l~ 252 (486)
.+-.+..+. ...+..+|+.
T Consensus 324 --------TG~L~~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 324 --------TGRLTLLGRYAVVPEPVCVK 343 (346)
T ss_pred --------CceEEecccccCCCCcEEEE
Confidence 122233333 4466777774
No 32
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.31 E-value=0.0017 Score=64.13 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=58.7
Q ss_pred cceeEEEccCCe-EEEEECCCCEE--EEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe
Q 011435 76 VPYKIRVSEDGE-LFAVDEVNSNI--VKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD 152 (486)
Q Consensus 76 ~P~GlAVd~dG~-LYVaD~~n~rI--~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD 152 (486)
=|+||++|.|-. .|+.|+.|..| +.+|..++.....+++..--... .-.--.|.|+++|.+|+||||-
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~---------~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ---------PFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC---------CcCCCCCCcceEccCCcEEEEE
Confidence 489999997655 89999999999 44446655444444444321000 0012258999999999999999
Q ss_pred CCCCEEEEEcCCC
Q 011435 153 TLNLAIRKIGDAG 165 (486)
Q Consensus 153 ~~n~rIrkid~~G 165 (486)
...++|+++|+..
T Consensus 230 ~ng~~V~~~dp~t 242 (310)
T KOG4499|consen 230 FNGGTVQKVDPTT 242 (310)
T ss_pred ecCcEEEEECCCC
Confidence 9999999999865
No 33
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.30 E-value=0.015 Score=56.37 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=77.9
Q ss_pred EEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccccc
Q 011435 56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF 134 (486)
Q Consensus 56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~L 134 (486)
++...+..+.++..+ ..|.+++++++|. ||++....+.|+.++..+.. .....- .+
T Consensus 16 ~d~~t~~~~~~~~~~----~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~-----~~----------- 72 (300)
T TIGR03866 16 IDTATLEVTRTFPVG----QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---VIGTLP-----SG----------- 72 (300)
T ss_pred EECCCCceEEEEECC----CCCCceEECCCCCEEEEEECCCCeEEEEECCCCc---EEEecc-----CC-----------
Confidence 445556655555432 2378999999987 78888888899999976421 111110 00
Q ss_pred CCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC-
Q 011435 135 NHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR- 209 (486)
Q Consensus 135 n~P~GIavD~dG~-LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~- 209 (486)
..|..++++++|+ ||++....+.|+.+|... +..+..+ ..|.+++ .+++|.++++..
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-----------------~~~~~~~-~~~dg~~l~~~~~ 134 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-----------------VEPEGMA-VSPDGKIVVNTSE 134 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-----------------CCcceEE-ECCCCCEEEEEec
Confidence 1366889999988 788877778999999765 2222111 1356776 566676555444
Q ss_pred CCCeEEEEECCC
Q 011435 210 GNAALRQISLNQ 221 (486)
Q Consensus 210 gn~rIr~id~~G 221 (486)
....+..++...
T Consensus 135 ~~~~~~~~d~~~ 146 (300)
T TIGR03866 135 TTNMAHFIDTKT 146 (300)
T ss_pred CCCeEEEEeCCC
Confidence 344566667654
No 34
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.29 E-value=0.00073 Score=67.54 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=45.8
Q ss_pred ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435 75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT 153 (486)
Q Consensus 75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~ 153 (486)
..|.++++++ .|+|||....+.+|+.+|.+|...+...+.. |..| ....+.+|.|||+|++|+|||+..
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~----g~~g------l~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR----GFHG------LSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST----TGGG-------SS---SEEEEEE-TT--EEEEET
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC----cccC------cccccCCccEEEECCCCCEEEEcC
Confidence 5799999997 6889999999999999998865322111111 2222 234688999999999999999986
Q ss_pred CCCEEEEE
Q 011435 154 LNLAIRKI 161 (486)
Q Consensus 154 ~n~rIrki 161 (486)
- |..++|
T Consensus 241 p-Nlfy~f 247 (248)
T PF06977_consen 241 P-NLFYRF 247 (248)
T ss_dssp T-TEEEEE
T ss_pred C-ceEEEe
Confidence 4 466665
No 35
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.14 E-value=0.0046 Score=61.85 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=65.4
Q ss_pred ceeEEEccC-CeEEEEECCCC-EEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEeC
Q 011435 77 PYKIRVSED-GELFAVDEVNS-NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVADT 153 (486)
Q Consensus 77 P~GlAVd~d-G~LYVaD~~n~-rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~ 153 (486)
-+|||+|+. +.||++--..- +|+.+...... ......... ...+ ....+..|.+|++|+ .|+|||-..
T Consensus 120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~~~~~~~-----~~~~---~~~~~~d~S~l~~~p~t~~lliLS~ 190 (248)
T PF06977_consen 120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDLFVSDDQ-----DLDD---DKLFVRDLSGLSYDPRTGHLLILSD 190 (248)
T ss_dssp -EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S--EEEE-H-----HHH----HT--SS---EEEEETTTTEEEEEET
T ss_pred eEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cceeecccc-----cccc---ccceeccccceEEcCCCCeEEEEEC
Confidence 589999985 55888754433 57777641100 011111110 0000 122456799999999 667999999
Q ss_pred CCCEEEEEcCCC-c-eEE--cCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEE
Q 011435 154 LNLAIRKIGDAG-V-TTI--AGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQI 217 (486)
Q Consensus 154 ~n~rIrkid~~G-v-~ti--aGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~i 217 (486)
.+.+|..+|.+| + ..+ ..+.. .....+..|-||| .|++|+|||+...| +..+|
T Consensus 191 es~~l~~~d~~G~~~~~~~L~~g~~---------gl~~~~~QpEGIa-~d~~G~LYIvsEpN-lfy~f 247 (248)
T PF06977_consen 191 ESRLLLELDRQGRVVSSLSLDRGFH---------GLSKDIPQPEGIA-FDPDGNLYIVSEPN-LFYRF 247 (248)
T ss_dssp TTTEEEEE-TT--EEEEEE-STTGG---------G-SS---SEEEEE-E-TT--EEEEETTT-EEEEE
T ss_pred CCCeEEEECCCCCEEEEEEeCCccc---------CcccccCCccEEE-ECCCCCEEEEcCCc-eEEEe
Confidence 999999999999 3 322 22110 1224577899998 68999999999866 55555
No 36
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.12 E-value=0.0076 Score=63.23 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=72.7
Q ss_pred CeEEEEECC----CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC-------
Q 011435 86 GELFAVDEV----NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT------- 153 (486)
Q Consensus 86 G~LYVaD~~----n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~------- 153 (486)
..+||.|.. .++|.+||.+... +.|... .| ..|.|+ +++||. ||||.+
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~------v~g~i~--~G-----------~~P~~~-~spDg~~lyva~~~~~R~~~ 72 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGR------VLGMTD--GG-----------FLPNPV-VASDGSFFAHASTVYSRIAR 72 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCE------EEEEEE--cc-----------CCCcee-ECCCCCEEEEEecccccccc
Confidence 359999987 3899999987432 222211 11 168997 999988 999999
Q ss_pred --CCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCC-CCeEEEEECCCC
Q 011435 154 --LNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRG-NAALRQISLNQD 222 (486)
Q Consensus 154 --~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-n~rIr~id~~G~ 222 (486)
..+.|.+||......++.-..+ ..........|..+++..++..|||++.. .+.|.+||+...
T Consensus 73 G~~~d~V~v~D~~t~~~~~~i~~p------~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 73 GKRTDYVEVIDPQTHLPIADIELP------EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred CCCCCEEEEEECccCcEEeEEccC------CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 8899999998773332211000 00011124467778744444479999966 899999998864
No 37
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.10 E-value=0.019 Score=58.79 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=78.6
Q ss_pred eeEEEccC---CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC-
Q 011435 78 YKIRVSED---GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT- 153 (486)
Q Consensus 78 ~GlAVd~d---G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~- 153 (486)
.|+|+-.. ..||.+|..+++|-++|..-. .+ .+.|.+ .|=. ..+. ..|.+|..- .|+|||+=.
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~---~~-~~~g~F------~DP~-iPag-yAPFnIqni-g~~lyVtYA~ 207 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR---PP-PLPGSF------IDPA-LPAG-YAPFNVQNL-GGTLYVTYAQ 207 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCccc---cc-cCCCCc------cCCC-CCCC-CCCcceEEE-CCeEEEEEEe
Confidence 56776532 359999999999999986521 11 222321 1111 1112 258888765 578999732
Q ss_pred ------------CCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEc-----CCCeEEEEeCCCCeE
Q 011435 154 ------------LNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR-----PTCSLLVIDRGNAAL 214 (486)
Q Consensus 154 ------------~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd-----~~G~LYVaD~gn~rI 214 (486)
+.+-|-+||.+| +.+++.+ ..|+.|+||+... -.|.|+|.+-+.++|
T Consensus 208 qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~--------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~I 273 (336)
T TIGR03118 208 QDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS--------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTI 273 (336)
T ss_pred cCCcccccccCCCcceEEEEcCCCcEEEEeccC--------------CcccCCceeeeChhhhCCCCCCeEEeecCCcee
Confidence 245788888888 5667544 4599999998422 367899999999999
Q ss_pred EEEECC
Q 011435 215 RQISLN 220 (486)
Q Consensus 215 r~id~~ 220 (486)
-.||..
T Consensus 274 naFD~~ 279 (336)
T TIGR03118 274 NAYDPQ 279 (336)
T ss_pred EEecCC
Confidence 999986
No 38
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.03 E-value=0.0093 Score=65.74 Aligned_cols=85 Identities=26% Similarity=0.333 Sum_probs=55.1
Q ss_pred CcccCccceeEEEcc-CCeEEEEECCCC-------------------EEEEEcCCCCc------ccccEEEecccCCccc
Q 011435 70 GNEIGVVPYKIRVSE-DGELFAVDEVNS-------------------NIVKITPPLSQ------YSRGRLVAGSFQGYTG 123 (486)
Q Consensus 70 G~~~~~~P~GlAVd~-dG~LYVaD~~n~-------------------rI~kid~~g~~------~~~~~~vaG~~~G~~G 123 (486)
|...+..|+||++++ +|.|||+-+.++ .|+++.+++.. .....+++|.......
T Consensus 345 GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~ 424 (524)
T PF05787_consen 345 GATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASG 424 (524)
T ss_pred ccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccc
Confidence 334457899999997 688999987666 79999887541 0112233333111111
Q ss_pred cCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435 124 HVDGKPNEARFNHPKGVTMDDKGNLYVADTL 154 (486)
Q Consensus 124 ~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 154 (486)
...+......|+.|.+|++|++|+|||+.-.
T Consensus 425 ~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~ 455 (524)
T PF05787_consen 425 NGSNKCDDNGFASPDNLAFDPDGNLWIQEDG 455 (524)
T ss_pred cccCcccCCCcCCCCceEECCCCCEEEEeCC
Confidence 1112224567999999999999999998643
No 39
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.99 E-value=0.016 Score=60.77 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCCcEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEEC---------CCCEEEEEcCCCCcccccEEEecccCC
Q 011435 51 ADGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDE---------VNSNIVKITPPLSQYSRGRLVAGSFQG 120 (486)
Q Consensus 51 ~~gsvv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~---------~n~rI~kid~~g~~~~~~~~vaG~~~G 120 (486)
+.-.|++...+.++.++..|.. |.++ +++||. ||||.+ ..+.|.++|..+... ..++..+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~--- 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPE--- 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCC---
Confidence 3445688888888888887754 9997 999987 999999 888999999874321 11122221
Q ss_pred ccccCCCCccccccCCcceEEEcCCCC-EEEEeCC-CCEEEEEcCCC
Q 011435 121 YTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTL-NLAIRKIGDAG 165 (486)
Q Consensus 121 ~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~-n~rIrkid~~G 165 (486)
+........|..+++++||+ |||++.. .+.|-++|...
T Consensus 98 -------~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~ 137 (352)
T TIGR02658 98 -------GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG 137 (352)
T ss_pred -------CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC
Confidence 00111245788999999998 9999976 89999999776
No 40
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.97 E-value=0.0069 Score=62.69 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=65.7
Q ss_pred cceeEEEccC----CeEEEEECCC--------CEEEEEcCCCC--cccccEEEe-cccCCccccCCCCccccccCCcceE
Q 011435 76 VPYKIRVSED----GELFAVDEVN--------SNIVKITPPLS--QYSRGRLVA-GSFQGYTGHVDGKPNEARFNHPKGV 140 (486)
Q Consensus 76 ~P~GlAVd~d----G~LYVaD~~n--------~rI~kid~~g~--~~~~~~~va-G~~~G~~G~~dG~~~~a~Ln~P~GI 140 (486)
...|||++++ +.|||+-+.. ++|.++..+.. .....++++ +... . ......-.+|
T Consensus 50 gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~-~---------~~~~H~g~~l 119 (331)
T PF07995_consen 50 GLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD-T---------SSGNHNGGGL 119 (331)
T ss_dssp SEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEE
T ss_pred CcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCC-C---------CCCCCCCccc
Confidence 4789999984 8899987632 47877765432 112222332 3211 0 0112244679
Q ss_pred EEcCCCCEEEEeCC-------------CCEEEEEcCCCceEEcCCCCCCCCcC----CCCccccccCCCceeEEEcCCCe
Q 011435 141 TMDDKGNLYVADTL-------------NLAIRKIGDAGVTTIAGGKSNVAGFR----DGPSEDAKFSNDFDVVYVRPTCS 203 (486)
Q Consensus 141 avD~dG~LYVAD~~-------------n~rIrkid~~Gv~tiaGg~~g~~G~~----DG~~~~a~f~~P~gIa~vd~~G~ 203 (486)
++++||.|||+=.. .+.|.+|+++|. +.... +-+. +...-..-|.+|.++++...+|+
T Consensus 120 ~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~--~p~dn---P~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~ 194 (331)
T PF07995_consen 120 AFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGS--IPADN---PFVGDDGADSEIYAYGLRNPFGLAFDPNTGR 194 (331)
T ss_dssp EE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSS--B-TTS---TTTTSTTSTTTEEEE--SEEEEEEEETTTTE
T ss_pred cCCCCCcEEEEeCCCCCcccccccccccceEEEecccCc--CCCCC---ccccCCCceEEEEEeCCCccccEEEECCCCc
Confidence 99999999998432 357889988872 11100 0000 00001123678999995444499
Q ss_pred EEEEeCCCC
Q 011435 204 LLVIDRGNA 212 (486)
Q Consensus 204 LYVaD~gn~ 212 (486)
||++|.+..
T Consensus 195 l~~~d~G~~ 203 (331)
T PF07995_consen 195 LWAADNGPD 203 (331)
T ss_dssp EEEEEE-SS
T ss_pred EEEEccCCC
Confidence 999997754
No 41
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.94 E-value=0.033 Score=60.37 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=66.4
Q ss_pred cceeEEEccC-------CeEEEEEC---------CCCEEEEEcCCC--CcccccE-EEecccCCccccCCCCccccccCC
Q 011435 76 VPYKIRVSED-------GELFAVDE---------VNSNIVKITPPL--SQYSRGR-LVAGSFQGYTGHVDGKPNEARFNH 136 (486)
Q Consensus 76 ~P~GlAVd~d-------G~LYVaD~---------~n~rI~kid~~g--~~~~~~~-~vaG~~~G~~G~~dG~~~~a~Ln~ 136 (486)
.+.|||++|+ +.|||+-+ ...+|.|+..+. ....... ++.+.. .... +.
T Consensus 80 GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP-~~~~-----------H~ 147 (454)
T TIGR03606 80 GLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLP-AGND-----------HN 147 (454)
T ss_pred ceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCC-CCCC-----------cC
Confidence 4689999865 35999842 246888887542 1111222 333321 1111 12
Q ss_pred cceEEEcCCCCEEEEeCCC--------------------------------CEEEEEcCCCceEEcCCCCCCCCcCCCC-
Q 011435 137 PKGVTMDDKGNLYVADTLN--------------------------------LAIRKIGDAGVTTIAGGKSNVAGFRDGP- 183 (486)
Q Consensus 137 P~GIavD~dG~LYVAD~~n--------------------------------~rIrkid~~Gv~tiaGg~~g~~G~~DG~- 183 (486)
=..|++++||.|||+--.. +.|.||+++|- +..+.. |.++.
T Consensus 148 GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGs--iP~dNP----f~~g~~ 221 (454)
T TIGR03606 148 GGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGS--IPKDNP----SINGVV 221 (454)
T ss_pred CceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCC--CCCCCC----ccCCCc
Confidence 3478899999999963322 25777777761 110000 11110
Q ss_pred --ccccccCCCceeEEEcCCCeEEEEeCCCC
Q 011435 184 --SEDAKFSNDFDVVYVRPTCSLLVIDRGNA 212 (486)
Q Consensus 184 --~~~a~f~~P~gIa~vd~~G~LYVaD~gn~ 212 (486)
.-.--+.+|.+++ .+++|.||++|.+-.
T Consensus 222 ~eIyA~G~RNp~Gla-~dp~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 222 SHIFTYGHRNPQGLA-FTPDGTLYASEQGPN 251 (454)
T ss_pred ceEEEEeccccceeE-ECCCCCEEEEecCCC
Confidence 0011267899998 577999999998753
No 42
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.88 E-value=0.014 Score=60.38 Aligned_cols=134 Identities=22% Similarity=0.285 Sum_probs=78.7
Q ss_pred ccceeEEEccCCeEEEEECCC------CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-
Q 011435 75 VVPYKIRVSEDGELFAVDEVN------SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN- 147 (486)
Q Consensus 75 ~~P~GlAVd~dG~LYVaD~~n------~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~- 147 (486)
..++||+++++|.+||++-+. ++|++++.+|.......+-..-.....+. .+ ...=....|||+.++|.
T Consensus 85 ~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~-~~---~~~N~G~E~la~~~dG~~ 160 (326)
T PF13449_consen 85 LDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGT-SG---RRNNRGFEGLAVSPDGRT 160 (326)
T ss_pred CChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCcc-cc---ccCCCCeEEEEECCCCCE
Confidence 378999998899999999999 99999999865421111111100000000 00 00011457999999999
Q ss_pred EEEEeCCC---------------CEEEEEcCC--C--ceEEcCCCCCCCCcC-CCCccccccCCCceeEEEcCCCeEEEE
Q 011435 148 LYVADTLN---------------LAIRKIGDA--G--VTTIAGGKSNVAGFR-DGPSEDAKFSNDFDVVYVRPTCSLLVI 207 (486)
Q Consensus 148 LYVAD~~n---------------~rIrkid~~--G--v~tiaGg~~g~~G~~-DG~~~~a~f~~P~gIa~vd~~G~LYVa 207 (486)
||++-... .||.++|.. + ...++ |. |.......-..+.++++ -+++.|+|.
T Consensus 161 l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~--------y~ld~~~~~~~~~~isd~~a-l~d~~lLvL 231 (326)
T PF13449_consen 161 LFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYA--------YPLDPPPTAPGDNGISDIAA-LPDGRLLVL 231 (326)
T ss_pred EEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEE--------EeCCccccccCCCCceeEEE-ECCCcEEEE
Confidence 88875432 466677654 2 22221 11 11111112345678875 456779999
Q ss_pred eCC-------CCeEEEEECCC
Q 011435 208 DRG-------NAALRQISLNQ 221 (486)
Q Consensus 208 D~g-------n~rIr~id~~G 221 (486)
++. ..+|+++++.+
T Consensus 232 ER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 232 ERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred EccCCCCccceEEEEEEEccc
Confidence 988 35688888764
No 43
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.75 E-value=0.028 Score=57.31 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=46.1
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCCC------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcC--CCeEEEE
Q 011435 136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRP--TCSLLVI 207 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~--~G~LYVa 207 (486)
.-.|+++|++|+||++|...++|.+.++++ +.+++-. ...|..|.++. ++. +|.|||.
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d-------------~~~l~~pd~~~-i~~~~~g~L~v~ 252 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD-------------PRTLQWPDGLK-IDPEGDGYLWVL 252 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE--------------CC-GSSEEEEE-E-T--TS-EEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc-------------Cceeeccceee-eccccCceEEEE
Confidence 347999999999999999999999999987 3455432 13488999997 678 8999998
Q ss_pred eC
Q 011435 208 DR 209 (486)
Q Consensus 208 D~ 209 (486)
-.
T Consensus 253 sn 254 (287)
T PF03022_consen 253 SN 254 (287)
T ss_dssp E-
T ss_pred EC
Confidence 73
No 44
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.51 E-value=0.028 Score=55.85 Aligned_cols=79 Identities=13% Similarity=0.206 Sum_probs=55.5
Q ss_pred ccCCcceEEEcCCCC-EEEEeCCCCEEEEEc--C-CC-c---eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeE
Q 011435 133 RFNHPKGVTMDDKGN-LYVADTLNLAIRKIG--D-AG-V---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSL 204 (486)
Q Consensus 133 ~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid--~-~G-v---~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~L 204 (486)
.+.-|+||++|.+-. .|+.|+.|..|-.+| - .| + ..+..-.. . ....-..|.|++ +|.+|+|
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk-------~--~~~e~~~PDGm~-ID~eG~L 225 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRK-------S--QPFESLEPDGMT-IDTEGNL 225 (310)
T ss_pred hccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEecc-------C--CCcCCCCCCcce-EccCCcE
Confidence 456799999998766 899999999995555 2 23 2 11211100 0 001112488997 7999999
Q ss_pred EEEeCCCCeEEEEECCC
Q 011435 205 LVIDRGNAALRQISLNQ 221 (486)
Q Consensus 205 YVaD~gn~rIr~id~~G 221 (486)
||+-...++|.++++..
T Consensus 226 ~Va~~ng~~V~~~dp~t 242 (310)
T KOG4499|consen 226 YVATFNGGTVQKVDPTT 242 (310)
T ss_pred EEEEecCcEEEEECCCC
Confidence 99999999999999875
No 45
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.51 E-value=0.22 Score=52.52 Aligned_cols=136 Identities=21% Similarity=0.247 Sum_probs=83.9
Q ss_pred CcEEEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEE-ecccCCccccCCCCcc
Q 011435 53 GNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLV-AGSFQGYTGHVDGKPN 130 (486)
Q Consensus 53 gsvv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~v-aG~~~G~~G~~dG~~~ 130 (486)
-+++++..+.++.++..|.. |.|+++++||+ ||+++...+.|..+|..+.. ....+ .+. ..+ ++
T Consensus 60 vsviD~~~~~~v~~i~~G~~----~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~~~~---~~~--~~--- 125 (369)
T PF02239_consen 60 VSVIDLATGKVVATIKVGGN----PRGIAVSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIPTGG---MPV--DG--- 125 (369)
T ss_dssp EEEEETTSSSEEEEEE-SSE----EEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--E---E-T--TT---
T ss_pred EEEEECCcccEEEEEecCCC----cceEEEcCCCCEEEEEecCCCceeEecccccc--ceeeccccc---ccc--cc---
Confidence 35588888888888877655 99999999998 89999999999999976432 12222 121 000 00
Q ss_pred ccccCCcceEEEcCCCCEEE-EeCCCCEEEEEcCCC-----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-
Q 011435 131 EARFNHPKGVTMDDKGNLYV-ADTLNLAIRKIGDAG-----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS- 203 (486)
Q Consensus 131 ~a~Ln~P~GIavD~dG~LYV-AD~~n~rIrkid~~G-----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~- 203 (486)
.-.+..+|...+....|| +-...++|+.+|... ++.+.-+ ..|.|.. .+++|+
T Consensus 126 --~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-----------------~~~~D~~-~dpdgry 185 (369)
T PF02239_consen 126 --PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-----------------RFPHDGG-FDPDGRY 185 (369)
T ss_dssp --S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------------------TTEEEEE-E-TTSSE
T ss_pred --cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-----------------ccccccc-cCcccce
Confidence 112456787777777554 556678999998543 2233211 2477876 577764
Q ss_pred EEEEeCCCCeEEEEECCCC
Q 011435 204 LLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 204 LYVaD~gn~rIr~id~~G~ 222 (486)
++++....+.|..+|....
T Consensus 186 ~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEEEGGGTEEEEEETTTT
T ss_pred eeecccccceeEEEeeccc
Confidence 6777777888999997754
No 46
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.40 E-value=0.068 Score=59.74 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=60.3
Q ss_pred CCcceEEEcCCCC-EEEEeCCCCEEEEEcCCCce-EEcCCCCCCCCcCCCCcccc-ccCCCceeEEEcCCCeEEEEeCCC
Q 011435 135 NHPKGVTMDDKGN-LYVADTLNLAIRKIGDAGVT-TIAGGKSNVAGFRDGPSEDA-KFSNDFDVVYVRPTCSLLVIDRGN 211 (486)
Q Consensus 135 n~P~GIavD~dG~-LYVAD~~n~rIrkid~~Gv~-tiaGg~~g~~G~~DG~~~~a-~f~~P~gIa~vd~~G~LYVaD~gn 211 (486)
++|.||++++||. +||+....+.|-+||...+. .|++.. .+.+-...+. .=..|...+ .|.+|+.|++-.-.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~----~~~~~vvaevevGlGPLHTa-FDg~G~aytslf~d 395 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI----KPRDAVVAEPELGLGPLHTA-FDGRGNAYTTLFLD 395 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC----CccceEEEeeccCCCcceEE-ECCCCCEEEeEeec
Confidence 5899999999999 99999989999999976622 222210 0000000000 012477887 58889999999999
Q ss_pred CeEEEEECCCCceeecc
Q 011435 212 AALRQISLNQDDCEYQY 228 (486)
Q Consensus 212 ~rIr~id~~G~~~~~~~ 228 (486)
.+|.+++++.....+.+
T Consensus 396 sqv~kwn~~~a~~~~~g 412 (635)
T PRK02888 396 SQIVKWNIEAAIRAYKG 412 (635)
T ss_pred ceeEEEehHHHHHHhcc
Confidence 99999998865444433
No 47
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.053 Score=57.79 Aligned_cols=133 Identities=22% Similarity=0.327 Sum_probs=82.7
Q ss_pred ccceeEEEccC-CeEEEEECCCCEE------EEEcCCCCcccccEEEecccCCccccC--CCCc----c-----ccccCC
Q 011435 75 VVPYKIRVSED-GELFAVDEVNSNI------VKITPPLSQYSRGRLVAGSFQGYTGHV--DGKP----N-----EARFNH 136 (486)
Q Consensus 75 ~~P~GlAVd~d-G~LYVaD~~n~rI------~kid~~g~~~~~~~~vaG~~~G~~G~~--dG~~----~-----~a~Ln~ 136 (486)
.+|.|+++++. |.||++|.+...+ -.+ ..|..|+......|. ...|.. ++.. . -+.--.
T Consensus 239 RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i-~~G~nYGWP~~~~G~--~~~g~~~~~~~~~~~~~~p~~~~~~h~A 315 (399)
T COG2133 239 RNPQGLAWHPVTGALWTTEHGPDALRGPDELNSI-RPGKNYGWPYAYFGQ--NYDGRAIPDGTVVAGAIQPVYTWAPHIA 315 (399)
T ss_pred CCccceeecCCCCcEEEEecCCCcccCccccccc-ccCCccCCceeccCc--ccCccccCCCcccccccCCceeeccccc
Confidence 48999999996 9999999876333 222 334445555444442 111110 1111 0 111134
Q ss_pred cceEEEcC-C------CCEEEEeCCCCEEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEe
Q 011435 137 PKGVTMDD-K------GNLYVADTLNLAIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVID 208 (486)
Q Consensus 137 P~GIavD~-d------G~LYVAD~~n~rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD 208 (486)
|.||++-. + |.++|+....-.+.+.+++| ...+..+ +..+ ..-.+|-||+ +.+||.|||+|
T Consensus 316 psGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~------fl~~----d~~gR~~dV~-v~~DGallv~~ 384 (399)
T COG2133 316 PSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTG------FLSG----DLGGRPRDVA-VAPDGALLVLT 384 (399)
T ss_pred cceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEE------EEec----CCCCcccceE-ECCCCeEEEee
Confidence 68999984 2 68999998777777788887 2222211 1000 0014789997 89999999999
Q ss_pred CC-CCeEEEEECCC
Q 011435 209 RG-NAALRQISLNQ 221 (486)
Q Consensus 209 ~g-n~rIr~id~~G 221 (486)
.. +++|+|+...+
T Consensus 385 D~~~g~i~Rv~~~~ 398 (399)
T COG2133 385 DQGDGRILRVSYAG 398 (399)
T ss_pred cCCCCeEEEecCCC
Confidence 87 77999998764
No 48
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.34 E-value=0.045 Score=60.42 Aligned_cols=92 Identities=21% Similarity=0.411 Sum_probs=59.6
Q ss_pred ccccCCcceEEEcC-CCCEEEEeCCCC-------------------EEEEEcCCC---------c--eEEcCCCCCCCCc
Q 011435 131 EARFNHPKGVTMDD-KGNLYVADTLNL-------------------AIRKIGDAG---------V--TTIAGGKSNVAGF 179 (486)
Q Consensus 131 ~a~Ln~P~GIavD~-dG~LYVAD~~n~-------------------rIrkid~~G---------v--~tiaGg~~g~~G~ 179 (486)
...|++|.||++++ +|.||||-+.+. +|+++++++ . ..++|........
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 45799999999999 678999988766 788887653 1 1122211101111
Q ss_pred CCCCccccccCCCceeEEEcCCCeEEEEeCCCCe---EEEEECCCCc
Q 011435 180 RDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA---LRQISLNQDD 223 (486)
Q Consensus 180 ~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r---Ir~id~~G~~ 223 (486)
..+......|++|-+|+ ++++|+|||++-++.. |.-...+|..
T Consensus 426 ~~~~~~~~~f~sPDNL~-~d~~G~LwI~eD~~~~~~~l~g~t~~G~~ 471 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLA-FDPDGNLWIQEDGGGSNNNLPGVTPDGEV 471 (524)
T ss_pred ccCcccCCCcCCCCceE-ECCCCCEEEEeCCCCCCcccccccccCce
Confidence 12233456799999998 6889999999865443 4455555543
No 49
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.29 E-value=0.17 Score=52.64 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=76.8
Q ss_pred ceeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCC
Q 011435 77 PYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTL 154 (486)
Q Consensus 77 P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~ 154 (486)
++..-++|+|+ |+++|-+..+|..++.+-+ .... +....-..| ..|.-|++.++|. .|+....
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg---~L~~-~~~~~v~~G-----------~GPRHi~FHpn~k~aY~v~EL 211 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDG---KLTP-ADPAEVKPG-----------AGPRHIVFHPNGKYAYLVNEL 211 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccC---cccc-ccccccCCC-----------CCcceEEEcCCCcEEEEEecc
Confidence 56677889996 8999999999999887621 1111 111001112 1599999999999 7999988
Q ss_pred CCEEEEE--cCC-C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 011435 155 NLAIRKI--GDA-G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 155 n~rIrki--d~~-G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G 221 (486)
|+.|.++ ++. | +..+---...-..|.+ -+.-..|. +.++| .||++|++.+.|..|..+.
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g-------~~~~aaIh-is~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTLPEDFTG-------TNWAAAIH-ISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccCccccCC-------CCceeEEE-ECCCCCEEEEecCCCCeEEEEEEcC
Confidence 9988765 443 3 3332111111112221 11223566 45555 7999999999998888764
No 50
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=95.87 E-value=0.1 Score=57.37 Aligned_cols=81 Identities=23% Similarity=0.259 Sum_probs=51.3
Q ss_pred CccceeEEEcc-CCeEEEEECCCC----------------EEEEEcCCCCc------ccccEEEecccCCccccCCCCcc
Q 011435 74 GVVPYKIRVSE-DGELFAVDEVNS----------------NIVKITPPLSQ------YSRGRLVAGSFQGYTGHVDGKPN 130 (486)
Q Consensus 74 ~~~P~GlAVd~-dG~LYVaD~~n~----------------rI~kid~~g~~------~~~~~~vaG~~~G~~G~~dG~~~ 130 (486)
...|++|++.+ .|+||++.+.|. .|+|+-+.+.- ....-+.+|...-..+.......
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 47899999997 578999988765 47777665320 11122334432111111111123
Q ss_pred ccccCCcceEEEcCCCCEEEEeCC
Q 011435 131 EARFNHPKGVTMDDKGNLYVADTL 154 (486)
Q Consensus 131 ~a~Ln~P~GIavD~dG~LYVAD~~ 154 (486)
...|+.|.+|++|+.|+|||+.-+
T Consensus 496 ~~~f~~PDnl~fD~~GrLWi~TDg 519 (616)
T COG3211 496 ANWFNSPDNLAFDPWGRLWIQTDG 519 (616)
T ss_pred cccccCCCceEECCCCCEEEEecC
Confidence 367999999999999999998643
No 51
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.49 E-value=0.048 Score=39.53 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=32.4
Q ss_pred CeEEEEECCCC-EEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC
Q 011435 86 GELFAVDEVNS-NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD 144 (486)
Q Consensus 86 G~LYVaD~~n~-rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~ 144 (486)
|.||.+|...+ .|.+.+.+|+. .++++.. .+.+|.|||||.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~---------------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSN---RRTVISD---------------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTS---EEEEEES---------------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCC---eEEEEEC---------------CCCCcCEEEECC
Confidence 57999999999 99999999864 3444432 277999999984
No 52
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.47 E-value=0.84 Score=47.15 Aligned_cols=134 Identities=7% Similarity=0.006 Sum_probs=71.2
Q ss_pred CccceeEEEccCCeEEEEECCCCEEEEEcCC-----CCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCE
Q 011435 74 GVVPYKIRVSEDGELFAVDEVNSNIVKITPP-----LSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNL 148 (486)
Q Consensus 74 ~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~-----g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~L 148 (486)
+.+|.||++.+.|.+||+|...+....++.+ +.....+.++-+ ..| ...-..|+||++......
T Consensus 22 L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~----~~~-------~~~~~~PTGiVfN~~~~F 90 (336)
T TIGR03118 22 LRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPA----PPP-------LAAEGTPTGQVFNGSDTF 90 (336)
T ss_pred ccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecC----CCC-------CCCCCCccEEEEeCCCce
Confidence 5689999999999999999999988888876 322111111111 111 011225999999865443
Q ss_pred EEEeCCC---CEEEEEcCCC-ceEEcCCCCCC---CC---cCCCCccccccCCCceeEEE--cCCCeEEEEeCCCCeEEE
Q 011435 149 YVADTLN---LAIRKIGDAG-VTTIAGGKSNV---AG---FRDGPSEDAKFSNDFDVVYV--RPTCSLLVIDRGNAALRQ 216 (486)
Q Consensus 149 YVAD~~n---~rIrkid~~G-v~tiaGg~~g~---~G---~~DG~~~~a~f~~P~gIa~v--d~~G~LYVaD~gn~rIr~ 216 (486)
-|..... .+-.....+| |+-........ .. +.++. ..+.+ .|+|+. ...+.||.+|-.+++|.+
T Consensus 91 ~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~gavY---kGLAi~~~~~~~~LYaadF~~g~IDV 166 (336)
T TIGR03118 91 VVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QGNVY---KGLAVGPTGGGDYLYAANFRQGRIDV 166 (336)
T ss_pred EEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCC-Cccee---eeeEEeecCCCceEEEeccCCCceEE
Confidence 3443221 1112223444 43333211100 00 00110 00110 245532 224689999999999999
Q ss_pred EECCCC
Q 011435 217 ISLNQD 222 (486)
Q Consensus 217 id~~G~ 222 (486)
||..-.
T Consensus 167 Fd~~f~ 172 (336)
T TIGR03118 167 FKGSFR 172 (336)
T ss_pred ecCccc
Confidence 987654
No 53
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=95.35 E-value=0.53 Score=50.34 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=73.9
Q ss_pred eeEEEccCCeEEEEECCC-------------CEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC
Q 011435 78 YKIRVSEDGELFAVDEVN-------------SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD 144 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n-------------~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~ 144 (486)
..|++++||.|||+=..+ +.|++++.++. ...+. ++. ......-.+++|.|+++++
T Consensus 180 ~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~------~~~d~-p~~----~~~i~s~G~RN~qGl~w~P 248 (399)
T COG2133 180 GRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGI------IPADN-PFP----NSEIWSYGHRNPQGLAWHP 248 (399)
T ss_pred ccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcc------cccCC-CCC----CcceEEeccCCccceeecC
Confidence 358889999999874333 34555555421 11111 000 0111233478999999999
Q ss_pred C-CCEEEEeCCCCEEEEEcCCCceEEcCCCC----------CCCCcC--CCCccccc----------cCCCceeEEEcCC
Q 011435 145 K-GNLYVADTLNLAIRKIGDAGVTTIAGGKS----------NVAGFR--DGPSEDAK----------FSNDFDVVYVRPT 201 (486)
Q Consensus 145 d-G~LYVAD~~n~rIrkid~~Gv~tiaGg~~----------g~~G~~--DG~~~~a~----------f~~P~gIa~vd~~ 201 (486)
. |.||++|.+...+ +-.|.++.+.-++. ...+.. ++. ..+. -..|.|+++.+.+
T Consensus 249 ~tg~Lw~~e~g~d~~--~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~-~~~~~~~p~~~~~~h~ApsGmaFy~G~ 325 (399)
T COG2133 249 VTGALWTTEHGPDAL--RGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGT-VVAGAIQPVYTWAPHIAPSGMAFYTGD 325 (399)
T ss_pred CCCcEEEEecCCCcc--cCcccccccccCCccCCceeccCcccCccccCCCc-ccccccCCceeeccccccceeEEecCC
Confidence 5 8999999887655 22222222211100 000110 110 0011 1236889876654
Q ss_pred ------CeEEEEeCCCCeEEEEECCCC
Q 011435 202 ------CSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 202 ------G~LYVaD~gn~rIr~id~~G~ 222 (486)
+.|+|+.-+...+.+++++|.
T Consensus 326 ~fP~~r~~lfV~~hgsw~~~~~~~~g~ 352 (399)
T COG2133 326 LFPAYRGDLFVGAHGSWPVLRLRPDGN 352 (399)
T ss_pred cCccccCcEEEEeecceeEEEeccCCC
Confidence 789999999988888888875
No 54
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=95.34 E-value=0.037 Score=38.76 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=28.7
Q ss_pred ccCCcceEEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 011435 133 RFNHPKGVTMDDKGN-LYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 133 ~Ln~P~GIavD~dG~-LYVAD~~n~rIrkid~~G 165 (486)
.+..|+|||+|+.+. ||.+|...+.|.+.+.+|
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 367899999999654 999999999999998776
No 55
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.28 E-value=0.056 Score=55.09 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=49.0
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCccc-ccEEEecccCCccccCCCCccccccCCcceEEEcC--CCCEEEEe
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYS-RGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD--KGNLYVAD 152 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~-~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYVAD 152 (486)
.-.|+++|++|+||+++...+.|.++++++.... ...+++-. ...|..|.+++++. +|.|||.-
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d-------------~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD-------------PRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE--------------CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc-------------CceeeccceeeeccccCceEEEEE
Confidence 3579999999999999999999999999863211 23445532 22388999999999 99999986
Q ss_pred CCCCEEEEE
Q 011435 153 TLNLAIRKI 161 (486)
Q Consensus 153 ~~n~rIrki 161 (486)
+++.++
T Consensus 254 ---nrl~~~ 259 (287)
T PF03022_consen 254 ---NRLQRF 259 (287)
T ss_dssp ----S--SS
T ss_pred ---CcchHh
Confidence 444443
No 56
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.06 E-value=0.87 Score=46.10 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=68.6
Q ss_pred cceeEEEccCCeEEEEECCCC--EEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeC
Q 011435 76 VPYKIRVSEDGELFAVDEVNS--NIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADT 153 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~--rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~ 153 (486)
+..|+.++.+|.||.+....+ +|+++++++.. +....--....+ -.||++- ++.||.--+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~---~~~~~~l~~~~F--------------gEGit~~-~d~l~qLTW 107 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK---VLQSVPLPPRYF--------------GEGITIL-GDKLYQLTW 107 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS---EEEEEE-TTT----------------EEEEEEE-TTEEEEEES
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc---EEEEEECCcccc--------------ceeEEEE-CCEEEEEEe
Confidence 578999988999999986544 79999988643 221111111122 2699998 457999999
Q ss_pred CCCEEEEEcCCCc---eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435 154 LNLAIRKIGDAGV---TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220 (486)
Q Consensus 154 ~n~rIrkid~~Gv---~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~ 220 (486)
.++...++|.+.+ .++.-. ...+|++ . .+..||++| |+.+|+.+|+.
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~-----------------~EGWGLt-~-dg~~Li~SD-GS~~L~~~dP~ 157 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP-----------------GEGWGLT-S-DGKRLIMSD-GSSRLYFLDPE 157 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S-----------------SS--EEE-E-CSSCEEEE--SSSEEEEE-TT
T ss_pred cCCeEEEEccccceEEEEEecC-----------------CcceEEE-c-CCCEEEEEC-CccceEEECCc
Confidence 9999999999884 333211 0235776 2 345677777 46788888875
No 57
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.01 E-value=0.87 Score=46.10 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=70.8
Q ss_pred ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435 75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL 154 (486)
Q Consensus 75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 154 (486)
.+-+||++- ++.||..-+.++...++|+++- . ..+++. +.| ..-|||.|. ..||++|.
T Consensus 90 ~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl-----~-~~~~~~-y~~------------EGWGLt~dg-~~Li~SDG- 147 (264)
T PF05096_consen 90 YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL-----K-KIGTFP-YPG------------EGWGLTSDG-KRLIMSDG- 147 (264)
T ss_dssp --EEEEEEE-TTEEEEEESSSSEEEEEETTTT-----E-EEEEEE--SS------------S--EEEECS-SCEEEE-S-
T ss_pred ccceeEEEE-CCEEEEEEecCCeEEEEccccc-----e-EEEEEe-cCC------------cceEEEcCC-CEEEEECC-
Confidence 357899986 5589999999999999998732 1 112210 011 234999773 46999995
Q ss_pred CCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 155 NLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 155 n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
.++|+.+|+.. +.++.... +| ..+..=+.+-++ +|.||---..+.+|.+||+..
T Consensus 148 S~~L~~~dP~~f~~~~~i~V~~-------~g----~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 148 SSRLYFLDPETFKEVRTIQVTD-------NG----RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp SSEEEEE-TTT-SEEEEEE-EE-------TT----EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT
T ss_pred ccceEEECCcccceEEEEEEEE-------CC----EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC
Confidence 78999999987 23332210 11 112334556665 688999889999999999885
No 58
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.95 E-value=0.67 Score=47.87 Aligned_cols=30 Identities=20% Similarity=0.515 Sum_probs=28.6
Q ss_pred CcceEEEcCCCCEEEEeCCC------CEEEEEcCCC
Q 011435 136 HPKGVTMDDKGNLYVADTLN------LAIRKIGDAG 165 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n------~rIrkid~~G 165 (486)
.+.||+++++|.+||++.+. ++|++++.+|
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G 121 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDG 121 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCC
Confidence 68999998899999999999 9999999998
No 59
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.90 E-value=0.087 Score=44.45 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=26.4
Q ss_pred cCCcceEEEcCCCC-EEEEeCCCCEEEEEc
Q 011435 134 FNHPKGVTMDDKGN-LYVADTLNLAIRKIG 162 (486)
Q Consensus 134 Ln~P~GIavD~dG~-LYVAD~~n~rIrkid 162 (486)
|..|+||++|++++ ||||+...+.|+++.
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 77899999999887 999999999998875
No 60
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.60 E-value=1.3 Score=45.48 Aligned_cols=148 Identities=15% Similarity=0.216 Sum_probs=78.3
Q ss_pred cCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCC--cc--cccEEEecccCC-ccccCCCCc----
Q 011435 59 ENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLS--QY--SRGRLVAGSFQG-YTGHVDGKP---- 129 (486)
Q Consensus 59 ~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~--~~--~~~~~vaG~~~G-~~G~~dG~~---- 129 (486)
-.|.++.++.--. ...|++|+.-.+|..-++|-...+++++..+-. .. ....+-.|...+ .+|+ .|-+
T Consensus 115 ~~GdlirtiPL~g--~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~Gf-EGlA~d~~ 191 (316)
T COG3204 115 KEGDLIRTIPLTG--FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGF-EGLAWDPV 191 (316)
T ss_pred cCCceEEEecccc--cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCc-eeeecCCC
Confidence 3455555554211 357999999888888889998888877765421 10 000122232221 2332 1111
Q ss_pred ----cccc--------------------------------cCCcceEEEcC-CCCEEEEeCCCCEEEEEcCCC-c-e--E
Q 011435 130 ----NEAR--------------------------------FNHPKGVTMDD-KGNLYVADTLNLAIRKIGDAG-V-T--T 168 (486)
Q Consensus 130 ----~~a~--------------------------------Ln~P~GIavD~-dG~LYVAD~~n~rIrkid~~G-v-~--t 168 (486)
--++ ++.=.|+.+|+ +|+|+|--...+++..+|.+| + . .
T Consensus 192 ~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 192 DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLS 271 (316)
T ss_pred CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEE
Confidence 0000 12223445554 444555554556777777777 2 2 1
Q ss_pred EcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435 169 IAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220 (486)
Q Consensus 169 iaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~ 220 (486)
+.++.. | -...+..+-||| .|++|+|||+-.-| .-.+|..+
T Consensus 272 L~~g~~---g------L~~dipqaEGia-mDd~g~lYIvSEPn-lfy~F~~~ 312 (316)
T COG3204 272 LTKGNH---G------LSSDIPQAEGIA-MDDDGNLYIVSEPN-LFYRFTPQ 312 (316)
T ss_pred eccCCC---C------CcccCCCcceeE-ECCCCCEEEEecCC-cceecccC
Confidence 222211 1 123355788998 79999999988665 34455443
No 61
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.60 E-value=0.1 Score=53.33 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=48.7
Q ss_pred eeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 78 YKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 78 ~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
.|+.+|+ .|+|+|.....++|+.++.+|...+...... |.+|. ....-+|.|||+|++|+|||+-.- +
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~----g~~gL------~~dipqaEGiamDd~g~lYIvSEP-n 304 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK----GNHGL------SSDIPQAEGIAMDDDGNLYIVSEP-N 304 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc----CCCCC------cccCCCcceeEECCCCCEEEEecC-C
Confidence 3566664 5678887778888999998865422222222 33442 234568999999999999998643 3
Q ss_pred EEEEEcC
Q 011435 157 AIRKIGD 163 (486)
Q Consensus 157 rIrkid~ 163 (486)
.-++|.+
T Consensus 305 lfy~F~~ 311 (316)
T COG3204 305 LFYRFTP 311 (316)
T ss_pred cceeccc
Confidence 4445543
No 62
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=93.84 E-value=0.32 Score=56.81 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=89.9
Q ss_pred ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEe
Q 011435 75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVAD 152 (486)
Q Consensus 75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD 152 (486)
..|.|+++|- .+++|.+|..+..|.+.+.+++. ..+++.. .+..|..+++++ .|.+|.+|
T Consensus 480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~---~~vl~~~---------------~l~~~r~~~v~p~~g~~~wtd 541 (877)
T KOG1215|consen 480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS---RKVLVSK---------------DLDLPRSIAVDPEKGLMFWTD 541 (877)
T ss_pred cccCcEEEEeccCCceecccCCceeEEEEccCCc---eeEEEec---------------CCCCccceeeccccCeeEEec
Confidence 4699999996 66799999999999999877542 3344442 135799999999 77799999
Q ss_pred CC-CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCC-eEEEEECCCCce
Q 011435 153 TL-NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNA-ALRQISLNQDDC 224 (486)
Q Consensus 153 ~~-n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~-rIr~id~~G~~~ 224 (486)
++ ..+|.+-..+| ...+... .+..|+++++.-.+..+|.+|.... .|.+++.+|...
T Consensus 542 ~~~~~~i~ra~~dg~~~~~l~~~---------------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r 602 (877)
T KOG1215|consen 542 WGQPPRIERASLDGSERAVLVTN---------------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNR 602 (877)
T ss_pred CCCCchhhhhcCCCCCceEEEeC---------------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCce
Confidence 98 45787777888 3333221 1457999998778889999999888 799999998644
No 63
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=93.73 E-value=2.4 Score=44.05 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=69.7
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCccccc--EEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEe
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRG--RLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVAD 152 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~--~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD 152 (486)
+-+.|++ .++.+|++.+.-+.+-.+++.-+..-.. ..+..-.+ ...+.| ||+|++ ||. -||+-
T Consensus 104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~---------eDRCHL---NGlA~~-~g~p~yVTa 169 (335)
T TIGR03032 104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAP---------EDRCHL---NGMALD-DGEPRYVTA 169 (335)
T ss_pred chhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCc---------cCceee---cceeee-CCeEEEEEE
Confidence 4588999 6789999999999999999875431111 11111000 011234 599998 566 78764
Q ss_pred CCCC---EEEEEc-CC-C-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC-CC
Q 011435 153 TLNL---AIRKIG-DA-G-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN-QD 222 (486)
Q Consensus 153 ~~n~---rIrkid-~~-G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~-G~ 222 (486)
.+.. .=+|-+ .+ | +.-+..+. ....-|..|.+--+ -+|+|||+|.+.+.|.++|++ |.
T Consensus 170 ~~~sD~~~gWR~~~~~gG~vidv~s~e----------vl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~ 234 (335)
T TIGR03032 170 LSQSDVADGWREGRRDGGCVIDIPSGE----------VVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGK 234 (335)
T ss_pred eeccCCcccccccccCCeEEEEeCCCC----------EEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCc
Confidence 3211 111111 11 2 22222110 00112566766654 368999999999999999997 53
No 64
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.45 E-value=0.23 Score=34.65 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=30.8
Q ss_pred ccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 188 KFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 188 ~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
.+..|+++++....+.||.+|...+.|.+.+.+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 36779999977777899999999999999999974
No 65
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=93.28 E-value=0.3 Score=50.53 Aligned_cols=72 Identities=21% Similarity=0.350 Sum_probs=48.9
Q ss_pred CCcEEEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccc
Q 011435 52 DGNVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNE 131 (486)
Q Consensus 52 ~gsvv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~ 131 (486)
.|.+++..++.++ .+| +..|++.-+ .+|.|||+|++.+.|.++|++++ +...++-- .|
T Consensus 186 gG~vidv~s~evl---~~G---LsmPhSPRW-hdgrLwvldsgtGev~~vD~~~G---~~e~Va~v----pG-------- 243 (335)
T TIGR03032 186 GGCVIDIPSGEVV---ASG---LSMPHSPRW-YQGKLWLLNSGRGELGYVDPQAG---KFQPVAFL----PG-------- 243 (335)
T ss_pred CeEEEEeCCCCEE---EcC---ccCCcCCcE-eCCeEEEEECCCCEEEEEcCCCC---cEEEEEEC----CC--------
Confidence 3444566555333 233 346888888 68999999999999999999732 34444432 22
Q ss_pred cccCCcceEEEcCCCCEEEE
Q 011435 132 ARFNHPKGVTMDDKGNLYVA 151 (486)
Q Consensus 132 a~Ln~P~GIavD~dG~LYVA 151 (486)
.|.||++. |++.|.
T Consensus 244 ----~~rGL~f~--G~llvV 257 (335)
T TIGR03032 244 ----FTRGLAFA--GDFAFV 257 (335)
T ss_pred ----CCccccee--CCEEEE
Confidence 58999998 776655
No 66
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.11 E-value=0.29 Score=54.84 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=60.0
Q ss_pred ccceeEEEccCCe-EEEEECCCCEEEEEcCCCCcc------cccEEEecccCCccccCCCCccccccCCcceEEEcCCCC
Q 011435 75 VVPYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQY------SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN 147 (486)
Q Consensus 75 ~~P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~------~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~ 147 (486)
.+|+||+++|||. +|++.-..+.|.+||...-.. .--.+++++.. -| ..|...++|++|+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vG-----------lGPLHTaFDg~G~ 387 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LG-----------LGPLHTAFDGRGN 387 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cC-----------CCcceEEECCCCC
Confidence 4699999999998 899988888999999763210 00012333211 11 2699999999999
Q ss_pred EEEEeCCCCEEEEEcCCC-ceEEcC
Q 011435 148 LYVADTLNLAIRKIGDAG-VTTIAG 171 (486)
Q Consensus 148 LYVAD~~n~rIrkid~~G-v~tiaG 171 (486)
.|++=.....|.+.|.+. +..+.|
T Consensus 388 aytslf~dsqv~kwn~~~a~~~~~g 412 (635)
T PRK02888 388 AYTTLFLDSQIVKWNIEAAIRAYKG 412 (635)
T ss_pred EEEeEeecceeEEEehHHHHHHhcc
Confidence 999988889999998765 444443
No 67
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.91 E-value=2.3 Score=46.03 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=80.0
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
-.++++.+||.+.++-.....|..+|..... ...+++.|. -+.-+.++++++|+++++=...+
T Consensus 206 v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH----------------~~~v~~~~f~p~g~~i~Sgs~D~ 268 (456)
T KOG0266|consen 206 VSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-RNLKTLKGH----------------STYVTSVAFSPDGNLLVSGSDDG 268 (456)
T ss_pred eeeeEECCCCcEEEEecCCceEEEeeccCCC-eEEEEecCC----------------CCceEEEEecCCCCEEEEecCCC
Confidence 4678898999988888888888888872110 123444443 22458999999999888888889
Q ss_pred EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCc
Q 011435 157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDD 223 (486)
Q Consensus 157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~ 223 (486)
.|+..|..+ +..+.+.. + .-.+++ ...+|+++++-..++.|+.+|.....
T Consensus 269 tvriWd~~~~~~~~~l~~hs-------~---------~is~~~-f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 269 TVRIWDVRTGECVRKLKGHS-------D---------GISGLA-FSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred cEEEEeccCCeEEEeeeccC-------C---------ceEEEE-ECCCCCEEEEcCCCccEEEEECCCCc
Confidence 999988765 44444321 1 123455 67888888888889999999998765
No 68
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=92.44 E-value=1 Score=37.95 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=27.3
Q ss_pred cCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435 189 FSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220 (486)
Q Consensus 189 f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~ 220 (486)
|..|+||++......|||++...+.|.++..+
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 78899999655567999999999999998765
No 69
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.93 E-value=2.6 Score=44.90 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=49.7
Q ss_pred ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEE--cC--CCCEE
Q 011435 75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTM--DD--KGNLY 149 (486)
Q Consensus 75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIav--D~--dG~LY 149 (486)
..++|+++|. .|.|||++-. .-|++++.+-......+.++-. .+ .+ ......||++ .. +|.|+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~-~g-~~---------l~aDvEGlaly~~~~g~gYLi 275 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASA-DG-DG---------LVADVEGLALYYGSDGKGYLI 275 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEB-SS-SS---------B-S-EEEEEEEE-CCC-EEEE
T ss_pred CcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecc-cc-cc---------cccCccceEEEecCCCCeEEE
Confidence 5799999996 6889999965 5899998763321122333211 01 01 1224678888 33 45699
Q ss_pred EEeCCCCEEEEEcCCC
Q 011435 150 VADTLNLAIRKIGDAG 165 (486)
Q Consensus 150 VAD~~n~rIrkid~~G 165 (486)
|++.+++...+++..+
T Consensus 276 vSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 276 VSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEGGGTEEEEEESST
T ss_pred EEcCCCCeEEEEecCC
Confidence 9999999999998765
No 70
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=91.88 E-value=8.9 Score=42.21 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=69.0
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
.-.+|+.+..|+|+.+.+.+ .+.+++..++.+..-.++ ..=.+|.|+|+.++|.+.|.-...
T Consensus 365 qI~~~~~~~~~~~~t~g~Dd-~l~~~~~~~~~~t~~~~~-----------------~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 365 QIKGMAASESGELFTIGWDD-TLRVISLKDNGYTKSEVV-----------------KLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred eEEEEeecCCCcEEEEecCC-eEEEEecccCccccccee-----------------ecCCCceeEEEcCCCCEEEEEecC
Confidence 35688888778888887654 788887653322111100 011389999999998744443333
Q ss_pred CEEEEEc-CCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 156 LAIRKIG-DAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 156 ~rIrkid-~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
.|..+. ..+++++--+ ..|..+| +.++++..+.--..+.|..+.+.|.
T Consensus 427 -~iv~l~~~~~~~~~~~~-----------------y~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~ 475 (603)
T KOG0318|consen 427 -DIVLLQDQTKVSSIPIG-----------------YESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGD 475 (603)
T ss_pred -cEEEEecCCcceeeccc-----------------cccceEE-EcCCCCEEEEecccceEEEEEecCC
Confidence 344444 4445555322 1355676 6788877777777788999998885
No 71
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=91.49 E-value=2.6 Score=46.72 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=52.2
Q ss_pred ccccCCcceEEEcC-CCCEEEEeCCCC----------------EEEEEcCCC-----------ceEEcCCCCCCC-CcCC
Q 011435 131 EARFNHPKGVTMDD-KGNLYVADTLNL----------------AIRKIGDAG-----------VTTIAGGKSNVA-GFRD 181 (486)
Q Consensus 131 ~a~Ln~P~GIavD~-dG~LYVAD~~n~----------------rIrkid~~G-----------v~tiaGg~~g~~-G~~D 181 (486)
...|.+|.+|++.+ .|.+|++.+.|. +|.++-+.+ +...+|...... +++.
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~ 492 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA 492 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence 55689999999998 667999999876 355553321 223333322111 1211
Q ss_pred CCccccccCCCceeEEEcCCCeEEEEeCCCC
Q 011435 182 GPSEDAKFSNDFDVVYVRPTCSLLVIDRGNA 212 (486)
Q Consensus 182 G~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~ 212 (486)
.... .-|++|.+|+ +|+.|+|||+.-++.
T Consensus 493 ~~~~-~~f~~PDnl~-fD~~GrLWi~TDg~~ 521 (616)
T COG3211 493 NINA-NWFNSPDNLA-FDPWGRLWIQTDGSG 521 (616)
T ss_pred Cccc-ccccCCCceE-ECCCCCEEEEecCCC
Confidence 1112 5699999997 799999999986654
No 72
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=90.67 E-value=6.2 Score=40.54 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=73.9
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEc----CCCCEEEE
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMD----DKGNLYVA 151 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD----~dG~LYVA 151 (486)
.-+.|..+.+|+++|+-...+.|++|++.++ ++.-..|...+ + |=.+....|..-.+..+- .++.|-|-
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG---~I~W~lgG~~~--~--df~~~~~~f~~QHdar~~~~~~~~~~IslF 217 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTG---KIIWRLGGKRN--S--DFTLPATNFSWQHDARFLNESNDDGTISLF 217 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCC---cEEEEeCCCCC--C--cccccCCcEeeccCCEEeccCCCCCEEEEE
Confidence 3467888899999999999999999996542 23323332101 1 101122234433444443 45666666
Q ss_pred eC----------CCCEEEEEcCCC--ceEEcCCC-CCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEE
Q 011435 152 DT----------LNLAIRKIGDAG--VTTIAGGK-SNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQIS 218 (486)
Q Consensus 152 D~----------~n~rIrkid~~G--v~tiaGg~-~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id 218 (486)
|. ..++|..+|+.. ++.+..-. ....-++. -.|-+=.=++|+++|.....+++..++
T Consensus 218 DN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~----------~~G~~Q~L~nGn~li~~g~~g~~~E~~ 287 (299)
T PF14269_consen 218 DNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSP----------SQGSAQRLPNGNVLIGWGNNGRISEFT 287 (299)
T ss_pred cCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCccccc----------CCCcceECCCCCEEEecCCCceEEEEC
Confidence 65 345777888766 22222110 00000100 011111336799999999999999999
Q ss_pred CCCC
Q 011435 219 LNQD 222 (486)
Q Consensus 219 ~~G~ 222 (486)
.+|+
T Consensus 288 ~~G~ 291 (299)
T PF14269_consen 288 PDGE 291 (299)
T ss_pred CCCC
Confidence 9996
No 73
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=90.57 E-value=0.57 Score=33.88 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCEEEEeCCCC-EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEc
Q 011435 146 GNLYVADTLNL-AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVR 199 (486)
Q Consensus 146 G~LYVAD~~n~-rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd 199 (486)
|+||.+|...+ +|.+.+.+| ..++... .+..|.+|| +|
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~---------------~l~~P~gia-VD 41 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD---------------DLQHPEGIA-VD 41 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES---------------STSSEEEEE-EE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC---------------CCCCcCEEE-EC
Confidence 57999999999 999999999 4555432 278899998 54
No 74
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.02 E-value=31 Score=37.26 Aligned_cols=131 Identities=18% Similarity=0.240 Sum_probs=83.8
Q ss_pred EEc-cCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCcccccc
Q 011435 56 LQF-ENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARF 134 (486)
Q Consensus 56 v~~-~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~L 134 (486)
.+. .++..+.++. |... .-+++++.++|+++++-...+.|+..+..+.. -...+.+. .+
T Consensus 230 wd~~~~~~~~~~l~-gH~~--~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~h-------s~-------- 289 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLK-GHST--YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGH-------SD-------- 289 (456)
T ss_pred eeccCCCeEEEEec-CCCC--ceEEEEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeecc-------CC--------
Confidence 444 3334444444 4332 35899999999999998888999999886421 12233332 11
Q ss_pred CCcceEEEcCCCCEEEEeCCCCEEEEEcCCC-ce----EEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435 135 NHPKGVTMDDKGNLYVADTLNLAIRKIGDAG-VT----TIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR 209 (486)
Q Consensus 135 n~P~GIavD~dG~LYVAD~~n~rIrkid~~G-v~----tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~ 209 (486)
.=+++++.++|+++++-..++.|+.+|..+ .. ++.+.. .-. |.--+...+++...++-.
T Consensus 290 -~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--------------~~~-~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 290 -GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE--------------NSA-PVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred -ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC--------------CCC-ceeEEEECCCCcEEEEec
Confidence 236889999999777767789999999776 31 232221 011 333334677887777777
Q ss_pred CCCeEEEEECCCC
Q 011435 210 GNAALRQISLNQD 222 (486)
Q Consensus 210 gn~rIr~id~~G~ 222 (486)
.++.++.+++...
T Consensus 354 ~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 354 LDRTLKLWDLRSG 366 (456)
T ss_pred CCCeEEEEEccCC
Confidence 7778888777754
No 75
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.78 E-value=1.1 Score=31.33 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=17.6
Q ss_pred CC-eEEEEECCCCEEEEEcCCC
Q 011435 85 DG-ELFAVDEVNSNIVKITPPL 105 (486)
Q Consensus 85 dG-~LYVaD~~n~rI~kid~~g 105 (486)
+| .|||++...+.|..||...
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCC
Confidence 44 4999999999999999853
No 76
>PRK03629 tolB translocation protein TolB; Provisional
Probab=89.70 E-value=19 Score=38.61 Aligned_cols=73 Identities=23% Similarity=0.190 Sum_probs=41.9
Q ss_pred eeEEEccCCe-E-EEEEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e
Q 011435 78 YKIRVSEDGE-L-FAVDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D 152 (486)
Q Consensus 78 ~GlAVd~dG~-L-YVaD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D 152 (486)
..+++++||+ | |+++. +...|+.++.+++. .+.+... .+ .-..+++++||. |+++ +
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---~~~l~~~----~~------------~~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VRQVASF----PR------------HNGAPAFSPDGSKLAFALS 262 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---eEEccCC----CC------------CcCCeEECCCCCEEEEEEc
Confidence 5678999997 4 44432 34568888876432 2222211 01 112468999997 6655 3
Q ss_pred C-CCCEEEEEcCCC--ceEE
Q 011435 153 T-LNLAIRKIGDAG--VTTI 169 (486)
Q Consensus 153 ~-~n~rIrkid~~G--v~ti 169 (486)
. ++..|+.+|.++ +..+
T Consensus 263 ~~g~~~I~~~d~~tg~~~~l 282 (429)
T PRK03629 263 KTGSLNLYVMDLASGQIRQV 282 (429)
T ss_pred CCCCcEEEEEECCCCCEEEc
Confidence 2 345788888765 4444
No 77
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=89.62 E-value=1.4 Score=43.71 Aligned_cols=112 Identities=20% Similarity=0.339 Sum_probs=59.2
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCc---c--cccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQ---Y--SRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD 152 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~---~--~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD 152 (486)
..|++|+.|.||.++. ++.|+|....... + +..+.+.+ ...+...-|..+++|.||+.+
T Consensus 84 ~~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~---------------~GW~~f~~vfa~~~GvLY~i~ 147 (229)
T PF14517_consen 84 KFIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGG---------------TGWNDFDAVFAGPNGVLYAIT 147 (229)
T ss_dssp SEEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE----------------SSGGGEEEEEE-TTS-EEEEE
T ss_pred eEEEecCCccEEEecc-ccceeeccCCCccCcchhhccceeccc---------------CCCccceEEEeCCCccEEEEc
Confidence 4799999999999886 5688888764321 0 01122222 124556789999999999999
Q ss_pred CCCCEEEEE-cCCC-------ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 153 TLNLAIRKI-GDAG-------VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 153 ~~n~rIrki-d~~G-------v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
.+. ++.+. .+++ .+++.++. + +..+.-| ...++|+||.+ ..++.|.|......
T Consensus 148 ~dg-~~~~~~~p~~~~~~W~~~s~~v~~~----g----------w~~~~~i-~~~~~g~L~~V-~~~G~lyr~~~p~~ 208 (229)
T PF14517_consen 148 PDG-RLYRRYRPDGGSDRWLSGSGLVGGG----G----------WDSFHFI-FFSPDGNLWAV-KSNGKLYRGRPPQN 208 (229)
T ss_dssp TTE--EEEE---SSTT--HHHH-EEEESS----S----------GGGEEEE-EE-TTS-EEEE--ETTEEEEES---S
T ss_pred CCC-ceEEeCCCCCCCCccccccceeccC----C----------cccceEE-eeCCCCcEEEE-ecCCEEeccCCccc
Confidence 654 77766 3333 23333321 1 2223445 47889999999 56688888776653
No 78
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=89.42 E-value=17 Score=33.37 Aligned_cols=110 Identities=15% Similarity=0.187 Sum_probs=66.5
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
....+.+++++.++++...++.|..++..... ....+.+ .-.....+++++++.++++-..+
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGK--CLTTLRG----------------HTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcE--EEEEecc----------------CCCcEEEEEEcCcCCEEEEEcCC
Confidence 35778888888888877767888888875211 1111111 01246789999988877766657
Q ss_pred CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 011435 156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G 221 (486)
+.|+.+|... +..+.... .....++ ..+++ .|+++.. ++.|+.++...
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~----------------~~i~~~~-~~~~~~~l~~~~~-~~~i~i~d~~~ 208 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHT----------------GEVNSVA-FSPDGEKLLSSSS-DGTIKLWDLST 208 (289)
T ss_pred CcEEEEEccccccceeEecCc----------------cccceEE-ECCCcCEEEEecC-CCcEEEEECCC
Confidence 8888888753 33332210 1234555 45555 4544444 77788888764
No 79
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=89.39 E-value=0.3 Score=34.80 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=16.6
Q ss_pred CcceEEEcCCCCEEEEeCC
Q 011435 136 HPKGVTMDDKGNLYVADTL 154 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~ 154 (486)
.+.+|++|++|||||+=..
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 6899999999999998543
No 80
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.12 E-value=6.3 Score=42.04 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=47.9
Q ss_pred CcceEEEcC-CCCEEEEeCCCCEEEEEcCC--C--c-eEEcCCCCCCCCcCCCCccccccCCCceeEEE---cCCCeEEE
Q 011435 136 HPKGVTMDD-KGNLYVADTLNLAIRKIGDA--G--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV---RPTCSLLV 206 (486)
Q Consensus 136 ~P~GIavD~-dG~LYVAD~~n~rIrkid~~--G--v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v---d~~G~LYV 206 (486)
.|.|+++|. .|.|||++.. ..||+++.+ + . +.++... + ++.. .-.-||++. +..|.|+|
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~-g-----~~l~-----aDvEGlaly~~~~g~gYLiv 276 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASAD-G-----DGLV-----ADVEGLALYYGSDGKGYLIV 276 (381)
T ss_dssp -EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBS-S-----SSB------S-EEEEEEEE-CCC-EEEEE
T ss_pred cceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeeccc-c-----cccc-----cCccceEEEecCCCCeEEEE
Confidence 789999998 6679999974 789999754 2 1 2221110 0 0110 112456653 33568999
Q ss_pred EeCCCCeEEEEECCCC
Q 011435 207 IDRGNAALRQISLNQD 222 (486)
Q Consensus 207 aD~gn~rIr~id~~G~ 222 (486)
++-+++...+++..+.
T Consensus 277 SsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 277 SSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEGGGTEEEEEESSTT
T ss_pred EcCCCCeEEEEecCCC
Confidence 9999999999998864
No 81
>smart00284 OLF Olfactomedin-like domains.
Probab=87.32 E-value=8.2 Score=39.01 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=44.8
Q ss_pred eEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC--EEEEeCCCC
Q 011435 79 KIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN--LYVADTLNL 156 (486)
Q Consensus 79 GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~--LYVAD~~n~ 156 (486)
|-+| -+|.||.--.....|.|+|..+........+-+ .|+.+--.-.-.=..=.++|+|.+|- ||-+...++
T Consensus 78 G~VV-YngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~-----a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g 151 (255)
T smart00284 78 GVVV-YNGSLYFNKFNSHDICRFDLTTETYQKEPLLNG-----AGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG 151 (255)
T ss_pred cEEE-ECceEEEEecCCccEEEEECCCCcEEEEEecCc-----cccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence 4444 468999988788899999997543211111111 11100000000001235899999886 666655444
Q ss_pred E--EEEEcCCC
Q 011435 157 A--IRKIGDAG 165 (486)
Q Consensus 157 r--Irkid~~G 165 (486)
. |-|+|+..
T Consensus 152 ~ivvSkLnp~t 162 (255)
T smart00284 152 KIVISKLNPAT 162 (255)
T ss_pred CEEEEeeCccc
Confidence 4 45999887
No 82
>PRK04792 tolB translocation protein TolB; Provisional
Probab=87.00 E-value=32 Score=37.12 Aligned_cols=69 Identities=17% Similarity=0.082 Sum_probs=39.6
Q ss_pred eeEEEccCCe-E-EEEEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e
Q 011435 78 YKIRVSEDGE-L-FAVDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D 152 (486)
Q Consensus 78 ~GlAVd~dG~-L-YVaD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D 152 (486)
...++++||+ | |+++. +...|+.++.+++. ...+... .| .-...++++||+ |+++ +
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~---~~~lt~~----~g------------~~~~~~wSPDG~~La~~~~ 281 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---REKVTSF----PG------------INGAPRFSPDGKKLALVLS 281 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCC---eEEecCC----CC------------CcCCeeECCCCCEEEEEEe
Confidence 3567889987 4 44443 34478888876532 2222211 01 012468889988 6554 3
Q ss_pred C-CCCEEEEEcCCC
Q 011435 153 T-LNLAIRKIGDAG 165 (486)
Q Consensus 153 ~-~n~rIrkid~~G 165 (486)
. ++..|+++|.++
T Consensus 282 ~~g~~~Iy~~dl~t 295 (448)
T PRK04792 282 KDGQPEIYVVDIAT 295 (448)
T ss_pred CCCCeEEEEEECCC
Confidence 3 234688888765
No 83
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=86.53 E-value=1.1 Score=31.96 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.4
Q ss_pred ccceeEEEccCCeEEEEECCCC
Q 011435 75 VVPYKIRVSEDGELFAVDEVNS 96 (486)
Q Consensus 75 ~~P~GlAVd~dG~LYVaD~~n~ 96 (486)
..+.+|++|++|++||+-..++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 4689999999999999876543
No 84
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.41 E-value=26 Score=32.10 Aligned_cols=108 Identities=15% Similarity=0.185 Sum_probs=64.9
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA 157 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r 157 (486)
..+.+.++++.+++-..++.|..++..... ....+.+. -.....++++++++++++...++.
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~~~~~~~~~~~~ 116 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGE--CVRTLTGH----------------TSYVSSVAFSPDGRILSSSSRDKT 116 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCccc--ceEEEecc----------------CCcEEEEEEcCCCCEEEEecCCCe
Confidence 478888888655555557788888876321 11222211 114678899988888888776788
Q ss_pred EEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435 158 IRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220 (486)
Q Consensus 158 Irkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~ 220 (486)
|..++... +..+.+. -.....++ ..+++.++++-..++.|+.++..
T Consensus 117 i~~~~~~~~~~~~~~~~~----------------~~~i~~~~-~~~~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 117 IKVWDVETGKCLTTLRGH----------------TDWVNSVA-FSPDGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred EEEEECCCcEEEEEeccC----------------CCcEEEEE-EcCcCCEEEEEcCCCcEEEEEcc
Confidence 99998763 3333211 01234454 34445555555556677777765
No 85
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=86.31 E-value=9.3 Score=38.00 Aligned_cols=110 Identities=23% Similarity=0.412 Sum_probs=55.4
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCC---CCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPP---LSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL 154 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~---g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 154 (486)
.-|+..|+|.||... ++.+++.++. +.........+|. .| -..|. .|++|++|.||..+.
T Consensus 37 ~~i~~~P~g~lY~I~--~~~lY~~~~~~~~~~~~~~~~~~Ig~----g~-------W~~F~---~i~~d~~G~LYaV~~- 99 (229)
T PF14517_consen 37 RDIAAGPNGRLYAIR--NDGLYRGSPSSSGGNTWDSGSKQIGD----GG-------WNSFK---FIFFDPTGVLYAVTP- 99 (229)
T ss_dssp SEEEE-TTS-EEEEE--TTEEEEES---STT--HHHH-EEEE-----S--------GGG-S---EEEE-TTS-EEEEET-
T ss_pred ceEEEcCCceEEEEE--CCceEEecCCccCcccccccCccccc----Cc-------cccee---EEEecCCccEEEecc-
Confidence 456778999999998 4488888432 1111122233332 11 12344 999999999998886
Q ss_pred CCEEEEEcCC---C---c----eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEE-ECCC
Q 011435 155 NLAIRKIGDA---G---V----TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQI-SLNQ 221 (486)
Q Consensus 155 n~rIrkid~~---G---v----~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~i-d~~G 221 (486)
++.+.+...- + . +.|.+ .|+.| ...++.+++|.||..+.+. ++.+. .+.+
T Consensus 100 ~G~lyR~~~~~~~~~~W~~~~~~~iG~-----~GW~~-----------f~~vfa~~~GvLY~i~~dg-~~~~~~~p~~ 160 (229)
T PF14517_consen 100 DGKLYRHPRPTNGSDNWIGGSGKKIGG-----TGWND-----------FDAVFAGPNGVLYAITPDG-RLYRRYRPDG 160 (229)
T ss_dssp T-EEEEES---STT--HHH-HSEEEE------SSGGG-----------EEEEEE-TTS-EEEEETTE--EEEE---SS
T ss_pred ccceeeccCCCccCcchhhccceeccc-----CCCcc-----------ceEEEeCCCccEEEEcCCC-ceEEeCCCCC
Confidence 5677776532 1 1 22211 22222 2345689999999999665 66666 4444
No 86
>PRK01742 tolB translocation protein TolB; Provisional
Probab=86.16 E-value=18 Score=38.50 Aligned_cols=74 Identities=24% Similarity=0.274 Sum_probs=41.8
Q ss_pred eeEEEccCCe-E-EEEEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e
Q 011435 78 YKIRVSEDGE-L-FAVDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D 152 (486)
Q Consensus 78 ~GlAVd~dG~-L-YVaD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D 152 (486)
..+++++||+ | |+++. .+..|+.++..++. ...+... .| +-..+++++||+ |+++ +
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~---~~~l~~~----~g------------~~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA---RKVVASF----RG------------HNGAPAFSPDGSRLAFASS 267 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc---eEEEecC----CC------------ccCceeECCCCCEEEEEEe
Confidence 5678999997 4 44432 33578888876432 2223221 11 112478999998 5554 3
Q ss_pred -CCCCEEEEEcCCC--ceEEc
Q 011435 153 -TLNLAIRKIGDAG--VTTIA 170 (486)
Q Consensus 153 -~~n~rIrkid~~G--v~tia 170 (486)
.++-.|+.+|.++ +..+.
T Consensus 268 ~~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 268 KDGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred cCCcEEEEEEECCCCCeEeec
Confidence 2334678888665 44443
No 87
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.95 E-value=16 Score=40.04 Aligned_cols=123 Identities=18% Similarity=0.183 Sum_probs=58.7
Q ss_pred EEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEE-Ee------
Q 011435 80 IRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYV-AD------ 152 (486)
Q Consensus 80 lAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYV-AD------ 152 (486)
+-..++|+|++... +++..+|..|..... ..+.+ + ...|+ .++...++|++++ +.
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~-~~l~~---~----------~~~~H--HD~~~l~nGn~L~l~~~~~~~~ 214 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGKVIWE-YDLPG---G----------YYDFH--HDIDELPNGNLLILASETKYVD 214 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT--EEEE-EE--T---T----------EE-B---S-EEE-TTS-EEEEEEETTEE-
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCCEEEe-eecCC---c----------ccccc--cccEECCCCCEEEEEeeccccc
Confidence 45567888777664 688888887542111 11111 0 01233 4888999999443 33
Q ss_pred ------CCCCEEEEEcCCC-c-eEEcCCCCC---CC------CcCC--CCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435 153 ------TLNLAIRKIGDAG-V-TTIAGGKSN---VA------GFRD--GPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA 213 (486)
Q Consensus 153 ------~~n~rIrkid~~G-v-~tiaGg~~g---~~------G~~D--G~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r 213 (486)
.....|..+|.+| + ...--.... .. .+.+ +........+-+.|.+...+++|+|+-+....
T Consensus 215 ~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~ 294 (477)
T PF05935_consen 215 EDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSA 294 (477)
T ss_dssp TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-E
T ss_pred CCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceE
Confidence 1146788999888 3 222111000 00 0011 11122233456788877779999999999999
Q ss_pred EEEEECC
Q 011435 214 LRQISLN 220 (486)
Q Consensus 214 Ir~id~~ 220 (486)
|.+|+..
T Consensus 295 V~~Id~~ 301 (477)
T PF05935_consen 295 VIKIDYR 301 (477)
T ss_dssp EEEEE-T
T ss_pred EEEEECC
Confidence 9999944
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=84.41 E-value=44 Score=34.65 Aligned_cols=87 Identities=9% Similarity=0.099 Sum_probs=58.0
Q ss_pred cEEEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccc
Q 011435 54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEAR 133 (486)
Q Consensus 54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~ 133 (486)
..+.+.+..-++.+. |... .=..|.+.|-++.|++-+....|+.+|..... ...+ -.
T Consensus 83 ryLsl~dNkylRYF~-GH~~--~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~---cqg~-----------------l~ 139 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFP-GHKK--RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK---CQGL-----------------LN 139 (311)
T ss_pred EEEEeecCceEEEcC-CCCc--eEEEEEecCCCCeEEecccCCeEEeeEecCCC---CceE-----------------Ee
Confidence 335566665555444 3322 24788899988999998888889888875221 0001 11
Q ss_pred cCCcceEEEcCCCCEEEEeCCCCEEEEEcC
Q 011435 134 FNHPKGVTMDDKGNLYVADTLNLAIRKIGD 163 (486)
Q Consensus 134 Ln~P~GIavD~dG~LYVAD~~n~rIrkid~ 163 (486)
+..+.-+|+|++|.|+.+=.++..|..+|.
T Consensus 140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 140 LSGRPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred cCCCcceeECCCCcEEEEecCCCeEEEEEe
Confidence 334667899999988887777778988884
No 89
>PRK02889 tolB translocation protein TolB; Provisional
Probab=83.99 E-value=48 Score=35.35 Aligned_cols=68 Identities=24% Similarity=0.187 Sum_probs=39.3
Q ss_pred eEEEccCCe-EEEEEC--CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e-
Q 011435 79 KIRVSEDGE-LFAVDE--VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D- 152 (486)
Q Consensus 79 GlAVd~dG~-LYVaD~--~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D- 152 (486)
.+++++||+ |+++.. .+..|+.++..++. ...+... .| .-...++++||+ |+++ +
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---~~~l~~~----~g------------~~~~~~~SPDG~~la~~~~~ 260 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---RRVVANF----KG------------SNSAPAWSPDGRTLAVALSR 260 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCC---EEEeecC----CC------------CccceEECCCCCEEEEEEcc
Confidence 567888987 544432 23568888876432 2333321 01 113578888887 5543 3
Q ss_pred CCCCEEEEEcCCC
Q 011435 153 TLNLAIRKIGDAG 165 (486)
Q Consensus 153 ~~n~rIrkid~~G 165 (486)
.++.+|+.+|.++
T Consensus 261 ~g~~~Iy~~d~~~ 273 (427)
T PRK02889 261 DGNSQIYTVNADG 273 (427)
T ss_pred CCCceEEEEECCC
Confidence 3456788888765
No 90
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=83.73 E-value=41 Score=35.02 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=38.3
Q ss_pred eeEEEccCCe-EEEEECC--CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EE-EEe
Q 011435 78 YKIRVSEDGE-LFAVDEV--NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LY-VAD 152 (486)
Q Consensus 78 ~GlAVd~dG~-LYVaD~~--n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY-VAD 152 (486)
..+++++||+ |+++... +..|+.++.++.. ...+... .+ .....+++++|. |+ ++|
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~~l~~~----~~------------~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LTRLTNG----PG------------IDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCC---EEECCCC----CC------------CCCCEEECCCCCEEEEEEC
Confidence 4578889986 6665432 3468888876432 2222211 00 112346777887 43 444
Q ss_pred CC-CCEEEEEcCCC
Q 011435 153 TL-NLAIRKIGDAG 165 (486)
Q Consensus 153 ~~-n~rIrkid~~G 165 (486)
.. ...|++++.++
T Consensus 298 ~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 298 RGGSPQIYMMDADG 311 (417)
T ss_pred CCCCceEEEEECCC
Confidence 33 34788888765
No 91
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=83.67 E-value=11 Score=43.25 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=74.6
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
.-..++..+||.+.++-...+.|.+.+...+.. ..++... -+.-+++.+..+|+..++-...
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--~vTFteH----------------ts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--FVTFTEH----------------TSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceE--EEEeccC----------------CCceEEEEEEecCCEEEEeecC
Confidence 347889999999999999999999998763321 1111111 1124689999999999999999
Q ss_pred CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC-CeEEEEECC
Q 011435 156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQISLN 220 (486)
Q Consensus 156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-~rIr~id~~ 220 (486)
++||.+|... ..|+..-. ..+| ..++ +|+.|.|.++-..+ -.|.+++..
T Consensus 414 GtVRAwDlkRYrNfRTft~P~------------p~Qf---scva-vD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPE------------PIQF---SCVA-VDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred CeEEeeeecccceeeeecCCC------------ceee---eEEE-EcCCCCEEEeeccceEEEEEEEee
Confidence 9999999765 55654321 1222 2455 78888877776543 345555543
No 92
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=83.42 E-value=11 Score=44.05 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=80.8
Q ss_pred ccceeEEEcc-CCeEEEEECC-CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCC-CCEEEE
Q 011435 75 VVPYKIRVSE-DGELFAVDEV-NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDK-GNLYVA 151 (486)
Q Consensus 75 ~~P~GlAVd~-dG~LYVaD~~-n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~d-G~LYVA 151 (486)
..|..+++++ .|.+|.+|++ ..+|.+-.++|.. ..++.. ..+..|+||++|-. ..+|-+
T Consensus 523 ~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~---~~~l~~---------------~~~~~p~glt~d~~~~~~yw~ 584 (877)
T KOG1215|consen 523 DLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSE---RAVLVT---------------NGILWPNGLTIDYETDRLYWA 584 (877)
T ss_pred CCccceeeccccCeeEEecCCCCchhhhhcCCCCC---ceEEEe---------------CCccCCCcceEEeecceeEEE
Confidence 4699999997 6779999987 4578887777653 222221 11457999999984 459999
Q ss_pred eCCCC-EEEEEcCCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 152 DTLNL-AIRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 152 D~~n~-rIrkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
|.... .|.+++.+| ...+.. ...+..|.+++. -.+.+|..|..+..+.+......
T Consensus 585 d~~~~~~i~~~~~~g~~r~~~~--------------~~~~~~p~~~~~--~~~~iyw~d~~~~~~~~~~~~~~ 641 (877)
T KOG1215|consen 585 DAKLDYTIESANMDGQNRRVVD--------------SEDLPHPFGLSV--FEDYIYWTDWSNRAISRAEKHKG 641 (877)
T ss_pred cccCCcceeeeecCCCceEEec--------------cccCCCceEEEE--ecceeEEeeccccceEeeecccC
Confidence 99887 788888888 222211 133567888874 45789999999987777776643
No 93
>PTZ00421 coronin; Provisional
Probab=82.56 E-value=83 Score=34.69 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=65.2
Q ss_pred eeEEEcc-CCeEEEEECCCCEEEEEcCCCCccc-----ccEEEecccCCccccCCCCccccccCCcceEEEcCCC-CEEE
Q 011435 78 YKIRVSE-DGELFAVDEVNSNIVKITPPLSQYS-----RGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKG-NLYV 150 (486)
Q Consensus 78 ~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~-----~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG-~LYV 150 (486)
.++++++ +++++++-..++.|..++....... ....+.| + -..-..|++++++ ++++
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-------H---------~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-------H---------TKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-------C---------CCcEEEEEeCcCCCCEEE
Confidence 6888988 7887777777888888876422100 0111111 1 1134578898865 5666
Q ss_pred EeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 151 ADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 151 AD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
+=..++.|+..|... +.++.+.. + .-..++ ..++|.++++-..++.|+.+|+..
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h~-------~---------~V~sla-~spdG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCHS-------D---------QITSLE-WNLDGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCCC-------C---------ceEEEE-EECCCCEEEEecCCCEEEEEECCC
Confidence 655678888888654 33432210 0 123454 345666666666677777777653
No 94
>PRK03629 tolB translocation protein TolB; Provisional
Probab=82.35 E-value=60 Score=34.74 Aligned_cols=68 Identities=21% Similarity=0.151 Sum_probs=41.4
Q ss_pred eEEEccCCe-EEEEEC--CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E-EEEeC
Q 011435 79 KIRVSEDGE-LFAVDE--VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L-YVADT 153 (486)
Q Consensus 79 GlAVd~dG~-LYVaD~--~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L-YVAD~ 153 (486)
.+++++||+ |+++.. ++..|+.++.++.. .+.+... . ......++++||+ | |++|.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---~~~lt~~--------~--------~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDG--------R--------SNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEccCC--------C--------CCcCceEECCCCCEEEEEeCC
Confidence 468889997 665532 33468888886532 2222211 0 0234678899998 4 66664
Q ss_pred C-CCEEEEEcCCC
Q 011435 154 L-NLAIRKIGDAG 165 (486)
Q Consensus 154 ~-n~rIrkid~~G 165 (486)
. ..+|++++.++
T Consensus 308 ~g~~~Iy~~d~~~ 320 (429)
T PRK03629 308 AGRPQVYKVNING 320 (429)
T ss_pred CCCceEEEEECCC
Confidence 3 45788888765
No 95
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.17 E-value=40 Score=35.30 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=17.5
Q ss_pred eEEEcCCCCEEEEeCCCCEEEEEcCC
Q 011435 139 GVTMDDKGNLYVADTLNLAIRKIGDA 164 (486)
Q Consensus 139 GIavD~dG~LYVAD~~n~rIrkid~~ 164 (486)
+++++ +|.|||.+. ++.++.+|.+
T Consensus 115 ~~~v~-~~~v~v~~~-~g~l~ald~~ 138 (394)
T PRK11138 115 GVTVA-GGKVYIGSE-KGQVYALNAE 138 (394)
T ss_pred ccEEE-CCEEEEEcC-CCEEEEEECC
Confidence 45666 567999874 5788999864
No 96
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=81.85 E-value=35 Score=35.52 Aligned_cols=69 Identities=23% Similarity=0.131 Sum_probs=39.5
Q ss_pred eeEEEccCCe-EEEEECC--CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435 78 YKIRVSEDGE-LFAVDEV--NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT 153 (486)
Q Consensus 78 ~GlAVd~dG~-LYVaD~~--n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~ 153 (486)
...++++||+ |+++... .+.|++++..+.. ...+... .+ ....+++++||+ |+++..
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~~~~~~~----~~------------~~~~~~~spDg~~l~~~~~ 253 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---REKVASF----PG------------MNGAPAFSPDGSKLAVSLS 253 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---EEEeecC----CC------------CccceEECCCCCEEEEEEC
Confidence 3456888987 5444433 3578888876432 2222211 01 123468888887 665533
Q ss_pred --CCCEEEEEcCCC
Q 011435 154 --LNLAIRKIGDAG 165 (486)
Q Consensus 154 --~n~rIrkid~~G 165 (486)
++..|+.++.++
T Consensus 254 ~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 254 KDGNPDIYVMDLDG 267 (417)
T ss_pred CCCCccEEEEECCC
Confidence 245688888765
No 97
>PRK05137 tolB translocation protein TolB; Provisional
Probab=81.72 E-value=36 Score=36.30 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=45.9
Q ss_pred CCcEEEEEecCcccCccceeEEEccCCe-E-EEEEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCC
Q 011435 60 NGYLVETVIEGNEIGVVPYKIRVSEDGE-L-FAVDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136 (486)
Q Consensus 60 ~G~~vetv~~G~~~~~~P~GlAVd~dG~-L-YVaD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~ 136 (486)
+|.....+..+... -..+++.+||+ | |+++. ++..|+.++..++. ...+... .| .
T Consensus 190 dg~~~~~lt~~~~~---v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---~~~l~~~----~g------------~ 247 (435)
T PRK05137 190 DGANVRYLTDGSSL---VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---RELVGNF----PG------------M 247 (435)
T ss_pred CCCCcEEEecCCCC---eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---EEEeecC----CC------------c
Confidence 44444444443321 24577889997 4 44443 34679999986532 2333321 01 1
Q ss_pred cceEEEcCCCC-EEEE-eC-CCCEEEEEcCCC
Q 011435 137 PKGVTMDDKGN-LYVA-DT-LNLAIRKIGDAG 165 (486)
Q Consensus 137 P~GIavD~dG~-LYVA-D~-~n~rIrkid~~G 165 (486)
-...++++||+ |+++ +. ++..|+.+|.++
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence 12557788887 4443 32 345688888665
No 98
>PRK04792 tolB translocation protein TolB; Provisional
Probab=81.63 E-value=23 Score=38.24 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=38.8
Q ss_pred eEEEccCCe-EEEE-EC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E-EEEeC
Q 011435 79 KIRVSEDGE-LFAV-DE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L-YVADT 153 (486)
Q Consensus 79 GlAVd~dG~-LYVa-D~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L-YVAD~ 153 (486)
.+++++||+ |+++ +. ++..|+.++.++.. .+.+... .......++++||. | |.++.
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~lt~~----------------~~~~~~p~wSpDG~~I~f~s~~ 326 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTRITRH----------------RAIDTEPSWHPDGKSLIFTSER 326 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEECccC----------------CCCccceEECCCCCEEEEEECC
Confidence 567888887 6554 32 23368888876432 2222211 01234567888887 4 44443
Q ss_pred -CCCEEEEEcCCC
Q 011435 154 -LNLAIRKIGDAG 165 (486)
Q Consensus 154 -~n~rIrkid~~G 165 (486)
++..|+++|.++
T Consensus 327 ~g~~~Iy~~dl~~ 339 (448)
T PRK04792 327 GGKPQIYRVNLAS 339 (448)
T ss_pred CCCceEEEEECCC
Confidence 345788888764
No 99
>PRK04922 tolB translocation protein TolB; Provisional
Probab=81.57 E-value=50 Score=35.23 Aligned_cols=69 Identities=12% Similarity=0.165 Sum_probs=38.5
Q ss_pred eeEEEccCCe-EEE-EECC-CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435 78 YKIRVSEDGE-LFA-VDEV-NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT 153 (486)
Q Consensus 78 ~GlAVd~dG~-LYV-aD~~-n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~ 153 (486)
..+++++||. |++ +|.. ...|+.++.++.. ...+.-. | .....++++++|+ |+++..
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt~~-----g-----------~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLTFQ-----G-----------NYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEeecC-----C-----------CCccCEEECCCCCEEEEEEC
Confidence 4567888887 444 4432 3358888765432 2222210 0 0123578899998 666543
Q ss_pred C--CCEEEEEcCCC
Q 011435 154 L--NLAIRKIGDAG 165 (486)
Q Consensus 154 ~--n~rIrkid~~G 165 (486)
. ...|..+|.++
T Consensus 356 ~~~~~~I~v~d~~~ 369 (433)
T PRK04922 356 SGGQYRIAVMDLST 369 (433)
T ss_pred CCCceeEEEEECCC
Confidence 3 34688888655
No 100
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.64 E-value=3.8 Score=40.43 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=36.4
Q ss_pred CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCcccc-CCCCccccccCCcceEEEcCCC-CEEEEeC
Q 011435 85 DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGH-VDGKPNEARFNHPKGVTMDDKG-NLYVADT 153 (486)
Q Consensus 85 dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~-~dG~~~~a~Ln~P~GIavD~dG-~LYVAD~ 153 (486)
||.||.-=+...+|.||+++.+ ++...+.- +|. ..-.+.....|-++|||.|+++ .+|++-.
T Consensus 185 dG~lyANVw~t~~I~rI~p~sG---rV~~widl----S~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSG---RVVAWIDL----SGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCC---cEEEEEEc----cCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 3555554455678999999853 34444332 110 0111123346789999999977 4888743
No 101
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=80.45 E-value=36 Score=39.21 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=69.3
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe-CCC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD-TLN 155 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD-~~n 155 (486)
-.++.+..+|++.++-+-.++|+.+|..- |...+++..- ...+| .-||+|+.|.|.+|- ...
T Consensus 395 Vt~v~f~~~g~~llssSLDGtVRAwDlkR--YrNfRTft~P------------~p~Qf---scvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 395 VTAVQFTARGNVLLSSSLDGTVRAWDLKR--YRNFRTFTSP------------EPIQF---SCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred eEEEEEEecCCEEEEeecCCeEEeeeecc--cceeeeecCC------------Cceee---eEEEEcCCCCEEEeeccce
Confidence 46788888999999988899999998752 2334444431 11122 379999999966654 445
Q ss_pred CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435 156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220 (486)
Q Consensus 156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~ 220 (486)
-.|.+.+... +..+.|-. |+ -.++. .++.|++.++-+....||..+.=
T Consensus 458 F~IfvWS~qTGqllDiLsGHE--------gP--------Vs~l~-f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHE--------GP--------VSGLS-FSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred EEEEEEEeecCeeeehhcCCC--------Cc--------ceeeE-EccccCeEEeccccceEEEEEee
Confidence 6777777543 34444421 11 12344 56677777777777777776643
No 102
>PRK00178 tolB translocation protein TolB; Provisional
Probab=80.27 E-value=83 Score=33.21 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=39.4
Q ss_pred eeEEEccCCe-E-EEEEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEE-Ee
Q 011435 78 YKIRVSEDGE-L-FAVDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV-AD 152 (486)
Q Consensus 78 ~GlAVd~dG~-L-YVaD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD 152 (486)
...++++||+ | |+++. .+..|++++.+++. ...+... .| .-...++++||+ |++ ++
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---~~~l~~~----~g------------~~~~~~~SpDG~~la~~~~ 262 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---REQITNF----EG------------LNGAPAWSPDGSKLAFVLS 262 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---EEEccCC----CC------------CcCCeEECCCCCEEEEEEc
Confidence 5567889987 5 55543 23578888876432 2222211 01 112467888887 544 33
Q ss_pred C-CCCEEEEEcCCC
Q 011435 153 T-LNLAIRKIGDAG 165 (486)
Q Consensus 153 ~-~n~rIrkid~~G 165 (486)
. ++..|+++|.++
T Consensus 263 ~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 263 KDGNPEIYVMDLAS 276 (430)
T ss_pred cCCCceEEEEECCC
Confidence 2 345788888765
No 103
>PRK05137 tolB translocation protein TolB; Provisional
Probab=80.15 E-value=57 Score=34.74 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=38.3
Q ss_pred eeEEEccCCe-EEE-EEC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435 78 YKIRVSEDGE-LFA-VDE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT 153 (486)
Q Consensus 78 ~GlAVd~dG~-LYV-aD~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~ 153 (486)
...++++||+ |++ +|. +...|++++.++.. .+.+... .+ .-...+++++|+ |+++..
T Consensus 293 ~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~--------~~--------~~~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 293 TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---PRRISFG--------GG--------RYSTPVWSPRGDLIAFTKQ 353 (435)
T ss_pred CceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---eEEeecC--------CC--------cccCeEECCCCCEEEEEEc
Confidence 3467788887 444 432 23468888876532 2222210 00 112456888887 555543
Q ss_pred C--CCEEEEEcCCC
Q 011435 154 L--NLAIRKIGDAG 165 (486)
Q Consensus 154 ~--n~rIrkid~~G 165 (486)
. ..+|..++.++
T Consensus 354 ~~~~~~i~~~d~~~ 367 (435)
T PRK05137 354 GGGQFSIGVMKPDG 367 (435)
T ss_pred CCCceEEEEEECCC
Confidence 2 35788888766
No 104
>PRK04043 tolB translocation protein TolB; Provisional
Probab=80.12 E-value=56 Score=35.08 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=37.0
Q ss_pred EEEccCCe-EEEEEC--CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEE-EeCC
Q 011435 80 IRVSEDGE-LFAVDE--VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV-ADTL 154 (486)
Q Consensus 80 lAVd~dG~-LYVaD~--~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD~~ 154 (486)
..+++||. |+++.. ++..|+.++.++.. .+.+... .+ .-....+++||+ ||+ +|..
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~----~~------------~d~~p~~SPDG~~I~F~Sdr~ 298 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNY----PG------------IDVNGNFVEDDKRIVFVSDRL 298 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccC----CC------------ccCccEECCCCCEEEEEECCC
Confidence 46788886 554432 34578888876532 2222211 00 001236888887 544 4433
Q ss_pred -CCEEEEEcCCC
Q 011435 155 -NLAIRKIGDAG 165 (486)
Q Consensus 155 -n~rIrkid~~G 165 (486)
...|+++|.++
T Consensus 299 g~~~Iy~~dl~~ 310 (419)
T PRK04043 299 GYPNIFMKKLNS 310 (419)
T ss_pred CCceEEEEECCC
Confidence 34788888776
No 105
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=79.84 E-value=35 Score=37.78 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=65.0
Q ss_pred ccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEE
Q 011435 72 EIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVA 151 (486)
Q Consensus 72 ~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA 151 (486)
+++..|.|+|+++||.+.|+-...+ |+.+...+. ....-. + ..|.++|+.++|+..+.
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~-iv~l~~~~~---~~~~~~-------~-----------y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISD-IVLLQDQTK---VSSIPI-------G-----------YESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCc-EEEEecCCc---ceeecc-------c-----------cccceEEEcCCCCEEEE
Confidence 4557899999999986444333333 444432110 011111 1 26889999999986666
Q ss_pred eCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 152 DTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 152 D~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
-...+.|+.+...| ....+-. .....-+..|++ .+++..+++--.++.|..++....
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~-------------~~h~a~iT~vay-Spd~~yla~~Da~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKL-------------LEHRAAITDVAY-SPDGAYLAAGDASRKVVLYDVASR 519 (603)
T ss_pred ecccceEEEEEecCCcccceeee-------------ecccCCceEEEE-CCCCcEEEEeccCCcEEEEEcccC
Confidence 55566677776655 2111110 001123567774 566665555556677888887643
No 106
>PRK04922 tolB translocation protein TolB; Provisional
Probab=79.82 E-value=78 Score=33.75 Aligned_cols=69 Identities=23% Similarity=0.126 Sum_probs=39.3
Q ss_pred eeEEEccCCe-EEEEEC--CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e
Q 011435 78 YKIRVSEDGE-LFAVDE--VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D 152 (486)
Q Consensus 78 ~GlAVd~dG~-LYVaD~--~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D 152 (486)
..+++++||+ |+++.. ....|++++.+++. ...+... .| .-..+++++||+ |+++ +
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---~~~l~~~----~g------------~~~~~~~SpDG~~l~~~~s 267 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---RELVASF----RG------------INGAPSFSPDGRRLALTLS 267 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---EEEeccC----CC------------CccCceECCCCCEEEEEEe
Confidence 4567888987 554432 23468888876432 2333321 11 112567888887 5443 3
Q ss_pred C-CCCEEEEEcCCC
Q 011435 153 T-LNLAIRKIGDAG 165 (486)
Q Consensus 153 ~-~n~rIrkid~~G 165 (486)
. ++..|+++|.++
T Consensus 268 ~~g~~~Iy~~d~~~ 281 (433)
T PRK04922 268 RDGNPEIYVMDLGS 281 (433)
T ss_pred CCCCceEEEEECCC
Confidence 3 345788888765
No 107
>PRK01029 tolB translocation protein TolB; Provisional
Probab=79.13 E-value=56 Score=35.07 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=38.5
Q ss_pred eeEEEccCCe-E-EEEECC-CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e
Q 011435 78 YKIRVSEDGE-L-FAVDEV-NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D 152 (486)
Q Consensus 78 ~GlAVd~dG~-L-YVaD~~-n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D 152 (486)
...++++||. | |++|.. ..+|++++.++.. +..+.+... ...-...++++||+ |+++ +
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~----------------~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKK----------------YRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccC----------------CCCccceeECCCCCEEEEEEc
Confidence 3468889997 4 445432 3468877654211 112222211 01123567889998 5444 3
Q ss_pred C-CCCEEEEEcCCC
Q 011435 153 T-LNLAIRKIGDAG 165 (486)
Q Consensus 153 ~-~n~rIrkid~~G 165 (486)
. +..+|+++|.++
T Consensus 347 ~~g~~~I~v~dl~~ 360 (428)
T PRK01029 347 IKGVRQICVYDLAT 360 (428)
T ss_pred CCCCcEEEEEECCC
Confidence 2 235788888765
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=78.60 E-value=53 Score=35.69 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=59.4
Q ss_pred EccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCC
Q 011435 57 QFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136 (486)
Q Consensus 57 ~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~ 136 (486)
+..+|+.+..+-+. .....=...++-|||.||.+-..++.|..+|.... ..++ .++|..| -
T Consensus 331 d~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-----~~~a-~Fpght~------------~ 391 (506)
T KOG0289|consen 331 DISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-----TNVA-KFPGHTG------------P 391 (506)
T ss_pred EccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-----cccc-cCCCCCC------------c
Confidence 44566665555542 11122466788899999999888888887876521 1222 2222222 2
Q ss_pred cceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEc
Q 011435 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIA 170 (486)
Q Consensus 137 P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tia 170 (486)
-..|++..||.-.++......|..+|..- +.++.
T Consensus 392 vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred eeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 35899999998767667777788888654 44543
No 109
>PRK02889 tolB translocation protein TolB; Provisional
Probab=78.46 E-value=53 Score=35.01 Aligned_cols=69 Identities=22% Similarity=0.230 Sum_probs=38.7
Q ss_pred eeEEEccCCe-EEEE-E-CCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E-EEEe
Q 011435 78 YKIRVSEDGE-LFAV-D-EVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L-YVAD 152 (486)
Q Consensus 78 ~GlAVd~dG~-LYVa-D-~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L-YVAD 152 (486)
..+++++||. |+++ + .++..|+.++.++.. .+.+... .+ .-...++++||. | |++|
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~----~~------------~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQS----SG------------IDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCCC----CC------------CCcCeEEcCCCCEEEEEec
Confidence 3578889986 5543 3 234568888876432 2222110 00 123457889997 4 4555
Q ss_pred C-CCCEEEEEcCCC
Q 011435 153 T-LNLAIRKIGDAG 165 (486)
Q Consensus 153 ~-~n~rIrkid~~G 165 (486)
. ++..|++++.++
T Consensus 304 ~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 304 RGGAPQIYRMPASG 317 (427)
T ss_pred CCCCcEEEEEECCC
Confidence 3 345788887654
No 110
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=77.59 E-value=7.6 Score=40.81 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=59.7
Q ss_pred eEEEEEC----CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCC------
Q 011435 87 ELFAVDE----VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLN------ 155 (486)
Q Consensus 87 ~LYVaD~----~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n------ 155 (486)
.|||.|. ..+||++||.+... +.|.. .+.|. | .++++++|+ +|+|++.-
T Consensus 4 rvyV~D~~~~~~~~rv~viD~d~~k------~lGmi------------~~g~~-~-~~~~spdgk~~y~a~T~~sR~~rG 63 (342)
T PF06433_consen 4 RVYVQDPVFFHMTSRVYVIDADSGK------LLGMI------------DTGFL-G-NVALSPDGKTIYVAETFYSRGTRG 63 (342)
T ss_dssp EEEEEE-GGGGSSEEEEEEETTTTE------EEEEE------------EEESS-E-EEEE-TTSSEEEEEEEEEEETTEE
T ss_pred EEEEECCccccccceEEEEECCCCc------EEEEe------------ecccC-C-ceeECCCCCEEEEEEEEEeccccc
Confidence 5888886 33588888876322 22321 11122 2 377889888 99999752
Q ss_pred ---CEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC-CCCeEEEEECCCC
Q 011435 156 ---LAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR-GNAALRQISLNQD 222 (486)
Q Consensus 156 ---~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~-gn~rIr~id~~G~ 222 (486)
.-|..+|...+...+.- ..+ .++ ....+..++.+++.+++..+||.+. -...|.+||+...
T Consensus 64 ~RtDvv~~~D~~TL~~~~EI--~iP---~k~-R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~ 128 (342)
T PF06433_consen 64 ERTDVVEIWDTQTLSPTGEI--EIP---PKP-RAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK 128 (342)
T ss_dssp EEEEEEEEEETTTTEEEEEE--EET---TS--B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT
T ss_pred cceeEEEEEecCcCcccceE--ecC---Ccc-hheecccccceEEccCCcEEEEEccCCCCeEEEEECCCC
Confidence 34667777663222110 000 000 1122456777776677778999884 4567888887764
No 111
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.24 E-value=33 Score=35.57 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=35.1
Q ss_pred EEcCCCC-EEEEeC----CCCEEEEEcCC-CceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCC
Q 011435 141 TMDDKGN-LYVADT----LNLAIRKIGDA-GVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRG 210 (486)
Q Consensus 141 avD~dG~-LYVAD~----~n~rIrkid~~-Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~g 210 (486)
++++||+ ||.++. +.++|-++|.. +...+..-.+ .| -.|..|. ..++| .|.|++-+
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s------~G-------IGPHel~-l~pDG~tLvVANGG 119 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS------HG-------IGPHELL-LMPDGETLVVANGG 119 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC------CC-------cChhhEE-EcCCCCEEEEEcCC
Confidence 6677888 888864 35678888877 4333321000 01 1488887 56667 88888855
No 112
>PRK04043 tolB translocation protein TolB; Provisional
Probab=76.71 E-value=66 Score=34.57 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=38.4
Q ss_pred eEEEccCCe--EEEEECC--CCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE-e
Q 011435 79 KIRVSEDGE--LFAVDEV--NSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA-D 152 (486)
Q Consensus 79 GlAVd~dG~--LYVaD~~--n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA-D 152 (486)
...+.+||+ +|++... +..|++++..++ ..+.++.. .+. .....+++||. |+++ +
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~~lt~~-~g~---------------~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KKEKIASS-QGM---------------LVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cEEEEecC-CCc---------------EEeeEECCCCCEEEEEEc
Confidence 456788886 6665544 467999988653 23344321 010 11235777886 4443 3
Q ss_pred -CCCCEEEEEcCCC
Q 011435 153 -TLNLAIRKIGDAG 165 (486)
Q Consensus 153 -~~n~rIrkid~~G 165 (486)
.++..|+.++.++
T Consensus 253 ~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 253 PKGQPDIYLYDTNT 266 (419)
T ss_pred cCCCcEEEEEECCC
Confidence 2346788888655
No 113
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=76.18 E-value=38 Score=34.01 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=45.1
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC--EEEEeCCC
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN--LYVADTLN 155 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~--LYVAD~~n 155 (486)
.|-+| -+|.||.--...+.|.|+|...........+-+. +..+-..-...=..=.++|+|.+|- ||-+...+
T Consensus 72 tG~vV-YngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A-----~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 72 TGHVV-YNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGA-----GYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN 145 (250)
T ss_pred CCeEE-ECCcEEEEecCCceEEEEECcCCcEEEEEECCcc-----ccccccceecCCCceEEEEEcCCCEEEEEecCCCC
Confidence 34445 5788998888888999999985432211122111 1100000000001125899998885 55555543
Q ss_pred --CEEEEEcCCC
Q 011435 156 --LAIRKIGDAG 165 (486)
Q Consensus 156 --~rIrkid~~G 165 (486)
-.|-|+|++.
T Consensus 146 g~ivvskld~~t 157 (250)
T PF02191_consen 146 GNIVVSKLDPET 157 (250)
T ss_pred CcEEEEeeCccc
Confidence 4567889877
No 114
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=75.57 E-value=46 Score=34.58 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=41.7
Q ss_pred EEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCEEEE
Q 011435 81 RVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRK 160 (486)
Q Consensus 81 AVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrk 160 (486)
.++.||.+|+. ..+++|..+++++.. ........+ ....++.|..++ +|.|||.+... .++.
T Consensus 64 ~~~~dg~v~~~-~~~G~i~A~d~~~g~----~~W~~~~~~---------~~~~~~~~~~~~---~G~i~~g~~~g-~~y~ 125 (370)
T COG1520 64 PADGDGTVYVG-TRDGNIFALNPDTGL----VKWSYPLLG---------AVAQLSGPILGS---DGKIYVGSWDG-KLYA 125 (370)
T ss_pred cEeeCCeEEEe-cCCCcEEEEeCCCCc----EEecccCcC---------cceeccCceEEe---CCeEEEecccc-eEEE
Confidence 36788999998 345589999987532 011110000 012344444444 89999999754 8999
Q ss_pred EcC-CC
Q 011435 161 IGD-AG 165 (486)
Q Consensus 161 id~-~G 165 (486)
+|. +|
T Consensus 126 ld~~~G 131 (370)
T COG1520 126 LDASTG 131 (370)
T ss_pred EECCCC
Confidence 998 67
No 115
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=75.56 E-value=30 Score=37.80 Aligned_cols=134 Identities=13% Similarity=0.187 Sum_probs=92.3
Q ss_pred CCCCcE--EEccCCcEEEEEecCcccCccceeEEEccCC-eEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCC
Q 011435 50 QADGNV--LQFENGYLVETVIEGNEIGVVPYKIRVSEDG-ELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVD 126 (486)
Q Consensus 50 ~~~gsv--v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG-~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~d 126 (486)
.-++.+ .+++.|.....+-.+.. |+.+-+.+|+ ++|++-..+.+|+.+|...+. ++...
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~~----~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k------vvqeY-------- 338 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDKV----PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK------VVQEY-------- 338 (503)
T ss_pred ecceeeeeeccccceEEEEEecCCC----ceeeecCCCCCcEEEEecCCCcEEEEeccchH------HHHHH--------
Confidence 334444 67888888888777665 8999999988 799999999999999975321 11110
Q ss_pred CCccccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe
Q 011435 127 GKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS 203 (486)
Q Consensus 127 G~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~ 203 (486)
...|..=+.|.+=++|.-+|+-.....|++.+-.- +..++.. +..+.|. +. +.+++.
T Consensus 339 ----d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~--------------~~hsmP~-~~-~~P~~~ 398 (503)
T KOG0282|consen 339 ----DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP--------------EMHTMPC-LT-LHPNGK 398 (503)
T ss_pred ----HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch--------------hhccCcc-ee-cCCCCC
Confidence 12344556888888888788777666666665433 3333321 3345564 44 678899
Q ss_pred EEEEeCCCCeEEEEECCC
Q 011435 204 LLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 204 LYVaD~gn~rIr~id~~G 221 (486)
.+++.+-.++|..+...-
T Consensus 399 ~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 399 WFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred eehhhccCceEEEEeccc
Confidence 999999999999888653
No 116
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=75.31 E-value=48 Score=35.53 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=77.9
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA 157 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r 157 (486)
-.+.+.|+|..+++..+...++..|.++.. -..+.-|. -+--.-|++.|||..+.+-..++.
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH----------------~~WVlcvawsPDgk~iASG~~dg~ 180 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGH----------------KNWVLCVAWSPDGKKIASGSKDGS 180 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCCC--cceeecCC----------------ccEEEEEEECCCcchhhccccCCe
Confidence 467788999999999999899999987532 01122221 234458999999999999999999
Q ss_pred EEEEcCCC----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 011435 158 IRKIGDAG----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEY 226 (486)
Q Consensus 158 Irkid~~G----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~ 226 (486)
|+..|+.. ..++.|-. ... .+.--.|..+ ++.++++.+.+..+.|+..+.....|.+
T Consensus 181 I~lwdpktg~~~g~~l~gH~-------K~I--t~Lawep~hl---~p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRGHK-------KWI--TALAWEPLHL---VPPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred EEEecCCCCCcccccccCcc-------cce--eEEeeccccc---CCCccceecccCCCCEEEEEccCceEEE
Confidence 99999654 23333321 100 0011124333 3566677777778888888888765554
No 117
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=74.95 E-value=28 Score=38.11 Aligned_cols=92 Identities=20% Similarity=0.251 Sum_probs=46.6
Q ss_pred ceeEEEccCCeEEEEEC-------------CCCEEEEEcCCCCcccccEEEecc---c-CCc--------cccCCCCccc
Q 011435 77 PYKIRVSEDGELFAVDE-------------VNSNIVKITPPLSQYSRGRLVAGS---F-QGY--------TGHVDGKPNE 131 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~-------------~n~rI~kid~~g~~~~~~~~vaG~---~-~G~--------~G~~dG~~~~ 131 (486)
-+++...++|++++.-. -...|+.|+.+|.. .-...- . ... .+...+....
T Consensus 192 HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~v----v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~ 267 (477)
T PF05935_consen 192 HHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEV----VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG 267 (477)
T ss_dssp -S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-E----EEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred ccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCE----EEEEehHHhCCcccccccccccccccccCCCC
Confidence 57888889999555332 24578999966432 221111 0 000 0101111122
Q ss_pred cccCCcceEEEcC-CCCEEEEeCCCCEEEEEc-CCC-ceEEcCC
Q 011435 132 ARFNHPKGVTMDD-KGNLYVADTLNLAIRKIG-DAG-VTTIAGG 172 (486)
Q Consensus 132 a~Ln~P~GIavD~-dG~LYVAD~~n~rIrkid-~~G-v~tiaGg 172 (486)
.---|-++|..|+ +++|+|+=+..+.|.+|| ..+ +.=+.|.
T Consensus 268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 268 RDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp SBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 2345678999999 667999988888999999 555 6555554
No 118
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=74.66 E-value=1.1e+02 Score=31.52 Aligned_cols=86 Identities=21% Similarity=0.345 Sum_probs=55.9
Q ss_pred ccCCcceEEEcCCCCEEEEeCCCCEEEEEc-CCC-ceEEcCCCCCCCCcCCCCccccccCCCceeEEE---cCCCeEEEE
Q 011435 133 RFNHPKGVTMDDKGNLYVADTLNLAIRKIG-DAG-VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYV---RPTCSLLVI 207 (486)
Q Consensus 133 ~Ln~P~GIavD~dG~LYVAD~~n~rIrkid-~~G-v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~v---d~~G~LYVa 207 (486)
-.-+-+.|..+.+|+++|+=+..+.|.+|+ .+| |.=..|+..+ ..|.. ....|..-.+..+. +.++.|-|-
T Consensus 142 D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~-~df~~---~~~~f~~QHdar~~~~~~~~~~IslF 217 (299)
T PF14269_consen 142 DYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN-SDFTL---PATNFSWQHDARFLNESNDDGTISLF 217 (299)
T ss_pred CccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC-Ccccc---cCCcEeeccCCEEeccCCCCCEEEEE
Confidence 355778999999999999999999999999 555 4333343211 12222 33446655565544 356777777
Q ss_pred eC----------CCCeEEEEECCCC
Q 011435 208 DR----------GNAALRQISLNQD 222 (486)
Q Consensus 208 D~----------gn~rIr~id~~G~ 222 (486)
|. ..++|..++....
T Consensus 218 DN~~~~~~~~~~s~~~v~~ld~~~~ 242 (299)
T PF14269_consen 218 DNANSDFNGTEPSRGLVLELDPETM 242 (299)
T ss_pred cCCCCCCCCCcCCCceEEEEECCCC
Confidence 76 3456777776654
No 119
>PRK00178 tolB translocation protein TolB; Provisional
Probab=72.71 E-value=82 Score=33.24 Aligned_cols=68 Identities=24% Similarity=0.180 Sum_probs=37.7
Q ss_pred eEEEccCCe-EEEE-EC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EE-EEeC
Q 011435 79 KIRVSEDGE-LFAV-DE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LY-VADT 153 (486)
Q Consensus 79 GlAVd~dG~-LYVa-D~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LY-VAD~ 153 (486)
.+++++||+ |+++ +. ++..|++++.++.. .+.+... .+ .....++++||+ || .+|.
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~----~~------------~~~~~~~spDg~~i~f~s~~ 307 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSRVTNH----PA------------IDTEPFWGKDGRTLYFTSDR 307 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEEcccC----CC------------CcCCeEECCCCCEEEEEECC
Confidence 467888886 5443 32 33478888876532 2222221 00 123457888887 44 4443
Q ss_pred C-CCEEEEEcCCC
Q 011435 154 L-NLAIRKIGDAG 165 (486)
Q Consensus 154 ~-n~rIrkid~~G 165 (486)
. +..|++++.++
T Consensus 308 ~g~~~iy~~d~~~ 320 (430)
T PRK00178 308 GGKPQIYKVNVNG 320 (430)
T ss_pred CCCceEEEEECCC
Confidence 3 45788888654
No 120
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=71.96 E-value=9 Score=41.64 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=77.9
Q ss_pred ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435 75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL 154 (486)
Q Consensus 75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 154 (486)
.-|+|+.+|.+|+.|++|-.-|.+.++.+.. +..-+..|.. -..| .....|..|+.+++-.+|-|.|+|..
T Consensus 168 qvhyg~t~df~~~~d~TgV~mH~t~kp~pkl---a~~~L~l~~~-tvp~-----~~~~~f~~~tsc~v~~n~~ihvfa~r 238 (501)
T KOG3567|consen 168 QVHYGLTIDFDGNYDVTGVGMHQTEKPQPKL---AKTMLLLGDG-TVPG-----EGTKHFETPTSCAVEENGPIHVFAYR 238 (501)
T ss_pred EeccccccCCCCCcccccceeeeeccCCchh---hceEEeecCC-ccCC-----CCccccCCCceEEEecCcceeeEEee
Confidence 5688999999999999999989899888763 2233333310 0011 12456888999999999999999976
Q ss_pred -CCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEE-EcCCCeEEEEeCCCCeEEEEECC
Q 011435 155 -NLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVY-VRPTCSLLVIDRGNAALRQISLN 220 (486)
Q Consensus 155 -n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~-vd~~G~LYVaD~gn~rIr~id~~ 220 (486)
+.+|...+..| +.....+ -|.+-... .|.-.-+ .+-+.-+=|+|..|.|++.+-..
T Consensus 239 ~hTh~Lgk~vsG~lv~q~~~g-----~w~~ig~r-----~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s 298 (501)
T KOG3567|consen 239 CHTHILGKVVSGYLVAQKHEG-----HWTLIGRR-----DPQLPQLFEPVNHIVCVADGDNQRVRCFFQS 298 (501)
T ss_pred eeehhhcceeeeeEeeeccCc-----ceeecccc-----CCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence 44566666666 2211111 11111001 2222212 23333677889999999988755
No 121
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=71.74 E-value=33 Score=37.01 Aligned_cols=112 Identities=15% Similarity=0.058 Sum_probs=74.6
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
.=+++++.+||.|..+....+-=++.|..+.. ..-+++|. +..-.+|+++|||....+-...
T Consensus 305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr--~im~L~gH----------------~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR--CIMFLAGH----------------IKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred ccceeEecCCCceeeccCccchhheeecccCc--EEEEeccc----------------ccceeeEeECCCceEEeecCCC
Confidence 34678999999998775543322334443211 12233332 3355799999999988888888
Q ss_pred CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
+.+++.|..+ +.+|.+- -+--.+|.+....|...++....+.+......+
T Consensus 367 nt~kVWDLR~r~~ly~ipAH----------------~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAH----------------SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred CcEEEeeecccccceecccc----------------cchhhheEecccCCeEEEEcccCcceeeecCCC
Confidence 8888888666 5666543 122346776556788889999999999888775
No 122
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=71.37 E-value=19 Score=24.79 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=18.7
Q ss_pred CCCeEEEEeCCCCeEEEEECCC
Q 011435 200 PTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 200 ~~G~LYVaD~gn~rIr~id~~G 221 (486)
..+.|||++.+.+.|..||...
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~ 23 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTAT 23 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCC
Confidence 3567999999999999999853
No 123
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=71.13 E-value=1.4e+02 Score=31.16 Aligned_cols=118 Identities=10% Similarity=0.043 Sum_probs=71.7
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
.+--.|.||+|-++.+-.+++.|..+|...-.-+=..++. ........=++|-+.+||...+.-+.+
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~-------------i~~~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFS-------------ITDNDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEc-------------cCCCCccceeeeEEcCCCCEEEEEeCC
Confidence 4556789999999888887778888876311000000100 001123344689999999944444556
Q ss_pred CEEEEEcC-CC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435 156 LAIRKIGD-AG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220 (486)
Q Consensus 156 ~rIrkid~-~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~ 220 (486)
+-|..+|. +| ..++.+-.. ..+.|-+ |...+++..+++-.++++|..++.+
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~-------------~~~~~~~-a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPN-------------AGNLPLS-ATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccC-------------CCCccee-EEECCCCcEEEEecCCCcEEEEEcC
Confidence 77888874 55 455544211 1223433 3466788888888888888888876
No 124
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=70.54 E-value=6.5 Score=42.66 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=30.6
Q ss_pred ccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC
Q 011435 131 EARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 131 ~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G 165 (486)
...|.-|.||.+|.||..|++|...+.+.+.++.+
T Consensus 463 ~~~fylphgl~~dkdgf~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 463 KNLFYLPHGLSIDKDGFYWVTDVASHQVFKLKPNN 497 (501)
T ss_pred CCceecCCcceecCCCcEEeecccchhhhhccccc
Confidence 34588999999999999999999999998887654
No 125
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=69.26 E-value=38 Score=33.68 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=42.5
Q ss_pred CCCEEEEeCCCCEEEEEcCCC--ceEEcCCCCCCCCcC-CCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC
Q 011435 145 KGNLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFR-DGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL 219 (486)
Q Consensus 145 dG~LYVAD~~n~rIrkid~~G--v~tiaGg~~g~~G~~-DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~ 219 (486)
+|.||.-=+...+|.+|+++. |.....- ++-. .-.....+.+-++|||+.+..+++|++-..=-.+..+..
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widl----S~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~ 258 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDL----SGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKL 258 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEc----cCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEEe
Confidence 477777777788999999875 4332211 0100 001122235678999988888899998654444444443
No 126
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=68.58 E-value=41 Score=35.67 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=46.2
Q ss_pred CCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 145 KGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 145 dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
+..++|+-.+...|+..+... |.++.|- -.|||+.--+|.+.|+-+..+.||.++.+.
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gH-------------------kRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGH-------------------KRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcc-------------------cccceehhccCeEEEecCCCceEEEEeccc
Confidence 334666666666666666554 5666553 236888888999999999999999999987
Q ss_pred Cceeec
Q 011435 222 DDCEYQ 227 (486)
Q Consensus 222 ~~~~~~ 227 (486)
..|...
T Consensus 390 G~cLRv 395 (499)
T KOG0281|consen 390 GACLRV 395 (499)
T ss_pred cHHHHH
Confidence 666554
No 127
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=68.52 E-value=71 Score=33.44 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=18.6
Q ss_pred cceEEEcCCCCEEEEeCCCCEEEEEcCCC
Q 011435 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 137 P~GIavD~dG~LYVAD~~n~rIrkid~~G 165 (486)
+..++++ +|.||+++. ++.|..+|...
T Consensus 287 ~~~~~~~-~~~vy~~~~-~g~l~ald~~t 313 (394)
T PRK11138 287 VNDFAVD-GGRIYLVDQ-NDRVYALDTRG 313 (394)
T ss_pred ccCcEEE-CCEEEEEcC-CCeEEEEECCC
Confidence 3345554 567999875 57888888754
No 128
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=68.41 E-value=1.1e+02 Score=28.85 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=47.7
Q ss_pred EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccC
Q 011435 56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFN 135 (486)
Q Consensus 56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln 135 (486)
++...|..+-...-+.. ...+...++..+|.||+++ ..+.|+.+|...+ +++.-... .+ .+.
T Consensus 8 ~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG-----~~~W~~~~--~~---------~~~ 69 (238)
T PF13360_consen 8 LDPRTGKELWSYDLGPG-IGGPVATAVPDGGRVYVAS-GDGNLYALDAKTG-----KVLWRFDL--PG---------PIS 69 (238)
T ss_dssp EETTTTEEEEEEECSSS-CSSEEETEEEETTEEEEEE-TTSEEEEEETTTS-----EEEEEEEC--SS---------CGG
T ss_pred EECCCCCEEEEEECCCC-CCCccceEEEeCCEEEEEc-CCCEEEEEECCCC-----CEEEEeec--cc---------ccc
Confidence 45556666555533221 1112222565678899996 5679999997432 12211100 00 011
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEc-CCC
Q 011435 136 HPKGVTMDDKGNLYVADTLNLAIRKIG-DAG 165 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n~rIrkid-~~G 165 (486)
.+ .+++ ++.|||+... ++|+.+| .+|
T Consensus 70 ~~--~~~~-~~~v~v~~~~-~~l~~~d~~tG 96 (238)
T PF13360_consen 70 GA--PVVD-GGRVYVGTSD-GSLYALDAKTG 96 (238)
T ss_dssp SG--EEEE-TTEEEEEETT-SEEEEEETTTS
T ss_pred ce--eeec-ccccccccce-eeeEecccCCc
Confidence 11 2443 5678998854 4999999 666
No 129
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=68.10 E-value=1.2e+02 Score=32.86 Aligned_cols=127 Identities=13% Similarity=0.202 Sum_probs=81.8
Q ss_pred EccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCC
Q 011435 57 QFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNH 136 (486)
Q Consensus 57 ~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~ 136 (486)
++..|........| .+..+...++-|||.=+|+.+....|...+.+|... +.-. | .+--.
T Consensus 297 Dv~tgd~~~~y~~~--~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-------~~W~---g--------vr~~~ 356 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSG--LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-------GNWE---G--------VRDPK 356 (519)
T ss_pred cCCcchhhhhcccC--cCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-------hccc---c--------cccce
Confidence 44444444444333 456788889999999899988888899999986531 1100 1 01112
Q ss_pred cceEEEcCCCC-EEEEeCCCCEEEEEcCCC-ceE-EcCCCCCCCCcCCCCccccccCCC-ceeEEEcCCCeEEEEeCCCC
Q 011435 137 PKGVTMDDKGN-LYVADTLNLAIRKIGDAG-VTT-IAGGKSNVAGFRDGPSEDAKFSND-FDVVYVRPTCSLLVIDRGNA 212 (486)
Q Consensus 137 P~GIavD~dG~-LYVAD~~n~rIrkid~~G-v~t-iaGg~~g~~G~~DG~~~~a~f~~P-~gIa~vd~~G~LYVaD~gn~ 212 (486)
-.+|++.+||. ++..+. ..+|+.++... +.. +.. ...| ..+ .+..+|.+...+-.++
T Consensus 357 v~dlait~Dgk~vl~v~~-d~~i~l~~~e~~~dr~lis-----------------e~~~its~-~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTV-DKKIRLYNREARVDRGLIS-----------------EEQPITSF-SISKDGKLALVNLQDQ 417 (519)
T ss_pred eEEEEEcCCCcEEEEEec-ccceeeechhhhhhhcccc-----------------ccCceeEE-EEcCCCcEEEEEcccC
Confidence 35899999998 666554 56788887654 211 111 0112 223 3678899999999999
Q ss_pred eEEEEECCCC
Q 011435 213 ALRQISLNQD 222 (486)
Q Consensus 213 rIr~id~~G~ 222 (486)
.|+..|+...
T Consensus 418 ei~LWDl~e~ 427 (519)
T KOG0293|consen 418 EIHLWDLEEN 427 (519)
T ss_pred eeEEeecchh
Confidence 9999999854
No 130
>PTZ00420 coronin; Provisional
Probab=65.56 E-value=2.4e+02 Score=31.87 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=62.8
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC-
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN- 155 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n- 155 (486)
...++++++|.++++-...+.|..+|+.... ....+.+. .| +.... .+ .. ..+.++++.+++=..+
T Consensus 170 V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH----~g---~~~s~-~v-~~--~~fs~d~~~IlTtG~d~ 236 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--IASSFHIH----DG---GKNTK-NI-WI--DGLGGDDNYILSTGFSK 236 (568)
T ss_pred EEEEEECCCCCEEEEEecCCEEEEEECCCCc--EEEEEecc----cC---CceeE-EE-Ee--eeEcCCCCEEEEEEcCC
Confidence 5788999999998887777889999986432 11122221 11 00000 00 00 1123566655542222
Q ss_pred ---CEEEEEcCCC----ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 156 ---LAIRKIGDAG----VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 156 ---~rIrkid~~G----v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
..|+.+|... +.++..... ..+---.+..++|.+|++-.+++.|+.++....
T Consensus 237 ~~~R~VkLWDlr~~~~pl~~~~ld~~---------------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 237 NNMREMKLWDLKNTTSALVTMSIDNA---------------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCccEEEEEECCCCCCceEEEEecCC---------------ccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 3577777553 333311100 000001234556889999999999999988643
No 131
>PLN00181 protein SPA1-RELATED; Provisional
Probab=65.02 E-value=1.8e+02 Score=33.72 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=66.8
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcc-cccE-EEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEeC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQY-SRGR-LVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVADT 153 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~-~~~~-~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~ 153 (486)
-.+++++++|+++++-..++.|..++...... +... ..... ..+ -....++++++ .+++.++-.
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~---~~~----------~~~v~~l~~~~~~~~~las~~ 552 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVE---LAS----------RSKLSGICWNSYIKSQVASSN 552 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEE---ecc----------cCceeeEEeccCCCCEEEEEe
Confidence 36789999999888777788888887542100 0000 00000 000 01235778876 355555545
Q ss_pred CCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 154 LNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 154 ~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
.++.|+.+|... +..+.+.. ..-+.+++...++.++++-..++.|+.++....
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~----------------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~ 608 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHE----------------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCC----------------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC
Confidence 578888888654 34443210 012356644456777777777888888887643
No 132
>PRK01742 tolB translocation protein TolB; Provisional
Probab=64.24 E-value=1.3e+02 Score=32.00 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=39.2
Q ss_pred eEEEccCCe-EEEE-EC-CCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEE-EeC
Q 011435 79 KIRVSEDGE-LFAV-DE-VNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYV-ADT 153 (486)
Q Consensus 79 GlAVd~dG~-LYVa-D~-~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYV-AD~ 153 (486)
.+++++||+ |+++ +. ++-.|+.++.++.. .+.+.+. .+ .-...++++||. |++ +|.
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~----~~------------~~~~~~wSpDG~~i~f~s~~ 312 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGT---PSQLTSG----AG------------NNTEPSWSPDGQSILFTSDR 312 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCC---eEeeccC----CC------------CcCCEEECCCCCEEEEEECC
Confidence 578888987 5554 32 22357788876432 2223221 00 234678899998 544 443
Q ss_pred -CCCEEEEEcCCC
Q 011435 154 -LNLAIRKIGDAG 165 (486)
Q Consensus 154 -~n~rIrkid~~G 165 (486)
++-+|+.++.++
T Consensus 313 ~g~~~I~~~~~~~ 325 (429)
T PRK01742 313 SGSPQVYRMSASG 325 (429)
T ss_pred CCCceEEEEECCC
Confidence 345788887766
No 133
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=61.04 E-value=2e+02 Score=31.00 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=63.9
Q ss_pred ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEc-----CCCCEE
Q 011435 75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMD-----DKGNLY 149 (486)
Q Consensus 75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD-----~dG~LY 149 (486)
+.-..|++.|||....+-..++.|...++..+. -.++.+.|. .. .-++|++. +...++
T Consensus 158 ~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-~~g~~l~gH-------~K---------~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 158 NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-QIGRALRGH-------KK---------WITALAWEPLHLVPPCRRL 220 (480)
T ss_pred cEEEEEEECCCcchhhccccCCeEEEecCCCCC-cccccccCc-------cc---------ceeEEeecccccCCCccce
Confidence 345589999999999999999999999986432 112222221 11 12344432 344455
Q ss_pred EEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 150 VADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 150 VAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
++-...+.|++.|..+ +.++.|-- +.-+.|. ...+|-|| +-+..++|++.+...
T Consensus 221 as~skDg~vrIWd~~~~~~~~~lsgHT----------------~~VTCvr-wGG~gliy-SgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCVRTLSGHT----------------ASVTCVR-WGGEGLIY-SGSQDRTIKVWRALD 277 (480)
T ss_pred ecccCCCCEEEEEccCceEEEEeccCc----------------cceEEEE-EcCCceEE-ecCCCceEEEEEccc
Confidence 5555566777777655 45554421 0112232 33344444 456678888888663
No 134
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=60.91 E-value=53 Score=28.27 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=34.2
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
+.-+.++.+|+|++.|..+..|..=... .+ ..+..+.+.++|+|.+-|..+.
T Consensus 55 ~~~l~l~~dGnLvl~~~~g~~vW~S~t~----------~~------------------~~~~~~~L~ddGnlvl~~~~~~ 106 (114)
T smart00108 55 SCTLTLQSDGNLVLYDGDGRVVWSSNTT----------GA------------------NGNYVLVLLDDGNLVIYDSDGN 106 (114)
T ss_pred CEEEEEeCCCCEEEEeCCCCEEEEeccc----------CC------------------CCceEEEEeCCCCEEEECCCCC
Confidence 4677888899999888755444321110 01 1355778888999888886554
Q ss_pred EE
Q 011435 157 AI 158 (486)
Q Consensus 157 rI 158 (486)
.|
T Consensus 107 ~~ 108 (114)
T smart00108 107 FL 108 (114)
T ss_pred EE
Confidence 44
No 135
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=60.82 E-value=74 Score=37.76 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=53.4
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
=.++++++++.++++-...+.|..++..+- ...+++-|. ...+.|+++||-|..+.+..+.+
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~vl~~H----------------~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLKVLRGH----------------QSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccc--eeeeeeecc----------------cccccceEECCccCeeeeecCCc
Confidence 467889999999999988899999986531 233333332 23688999999998887777766
Q ss_pred EEEEEc--CCC-ceEEcC
Q 011435 157 AIRKIG--DAG-VTTIAG 171 (486)
Q Consensus 157 rIrkid--~~G-v~tiaG 171 (486)
.|.+.. .-| ..+|.+
T Consensus 194 tikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 194 TLKVWRTSDWGIEKSITK 211 (942)
T ss_pred eEEEEEcccceeeEeecc
Confidence 655544 444 344443
No 136
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=60.34 E-value=2.1e+02 Score=29.36 Aligned_cols=69 Identities=9% Similarity=0.088 Sum_probs=45.4
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcCCCc----eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435 138 KGVTMDDKGNLYVADTLNLAIRKIGDAGV----TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA 213 (486)
Q Consensus 138 ~GIavD~dG~LYVAD~~n~rIrkid~~Gv----~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r 213 (486)
.-.-++|++...++-.....+.+++.++. ..+-|+ . ..-+|-+ ...+|.-+|+-...+.
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh----~------------rWvWdc~-FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH----Q------------RWVWDCA-FSADGEYLVTASSDHT 281 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC----C------------ceEEeee-eccCccEEEecCCCCc
Confidence 44567788888888877888888888873 122221 0 1234555 5677887888777787
Q ss_pred EEEEECCCCc
Q 011435 214 LRQISLNQDD 223 (486)
Q Consensus 214 Ir~id~~G~~ 223 (486)
++..++....
T Consensus 282 ~rlW~~~~~k 291 (311)
T KOG0315|consen 282 ARLWDLSAGK 291 (311)
T ss_pred eeecccccCc
Confidence 7777776543
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=59.71 E-value=2.3e+02 Score=31.25 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=18.7
Q ss_pred eEEEcCCCCEEEEeCCCCEEEEEcCCC
Q 011435 139 GVTMDDKGNLYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 139 GIavD~dG~LYVAD~~n~rIrkid~~G 165 (486)
-..|.+++++.+....++.|..+....
T Consensus 308 ~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 308 RFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred eeEecCCCCeEEEcccCceEEeehhhh
Confidence 346777888666666778888876543
No 138
>PTZ00420 coronin; Provisional
Probab=59.65 E-value=3e+02 Score=31.08 Aligned_cols=112 Identities=9% Similarity=0.011 Sum_probs=67.2
Q ss_pred ceeEEEccC-CeEEEEECCCCEEEEEcCCCCcc--cc----cEEEecccCCccccCCCCccccccCCcceEEEcCCCC-E
Q 011435 77 PYKIRVSED-GELFAVDEVNSNIVKITPPLSQY--SR----GRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-L 148 (486)
Q Consensus 77 P~GlAVd~d-G~LYVaD~~n~rI~kid~~g~~~--~~----~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-L 148 (486)
-.++++.++ ++++++-...+.|..++...... .. ...+.| + -..-..|++++++. +
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-------H---------~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-------H---------KKKISIIDWNPMNYYI 140 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec-------C---------CCcEEEEEECCCCCeE
Confidence 478888885 77888777788888888642110 00 001111 1 11346889999876 4
Q ss_pred EEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 149 YVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 149 YVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
+++=..++.|+.+|... +..+... .....++ .+++|.++++-...+.|+.+|+...
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~~i~~~-----------------~~V~Sls-wspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAFQINMP-----------------KKLSSLK-WNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecC-----------------CcEEEEE-ECCCCCEEEEEecCCEEEEEECCCC
Confidence 44444567888888654 2222111 0123555 5677888777766778888887754
No 139
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=59.42 E-value=44 Score=33.72 Aligned_cols=66 Identities=26% Similarity=0.364 Sum_probs=39.9
Q ss_pred CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCc----------ceEEEcCCCC--EEEEe
Q 011435 85 DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHP----------KGVTMDDKGN--LYVAD 152 (486)
Q Consensus 85 dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P----------~GIavD~dG~--LYVAD 152 (486)
+|.+|.--.....|+|++... +++++... ...+....+ .++|+|.+|- ||-++
T Consensus 77 nGs~yynk~~t~~ivky~l~~------~~~~~~~~---------lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~ 141 (249)
T KOG3545|consen 77 NGSLYYNKAGTRNIIKYDLET------RTVAGSAA---------LPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATP 141 (249)
T ss_pred cceEEeeccCCcceEEEEeec------ceeeeeee---------ccccccCCCcccccCCCccccceecccceeEEeccc
Confidence 688888777777899999863 22222210 001112222 6899999986 66666
Q ss_pred CCCCEE--EEEcCCC
Q 011435 153 TLNLAI--RKIGDAG 165 (486)
Q Consensus 153 ~~n~rI--rkid~~G 165 (486)
..++.| .++|+..
T Consensus 142 ~~~g~iv~skLdp~t 156 (249)
T KOG3545|consen 142 ENAGTIVLSKLDPET 156 (249)
T ss_pred ccCCcEEeeccCHHH
Confidence 555443 5778754
No 140
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=58.27 E-value=35 Score=36.25 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=64.5
Q ss_pred CCCcE--EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCC
Q 011435 51 ADGNV--LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGK 128 (486)
Q Consensus 51 ~~gsv--v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~ 128 (486)
+++++ ++.-.+..+..+.-+. .+++|+++|++..|++-...+.++.+|.. ....-.+. ..|+
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~m----RTN~IswnPeafnF~~a~ED~nlY~~DmR-----~l~~p~~v---~~dh---- 271 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILTM----RTNTICWNPEAFNFVAANEDHNLYTYDMR-----NLSRPLNV---HKDH---- 271 (433)
T ss_pred cCCceEEEecccCCccceeeeec----cccceecCccccceeeccccccceehhhh-----hhcccchh---hccc----
Confidence 55555 3444555555555544 48999999998899999899999999874 11111121 1111
Q ss_pred ccccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC
Q 011435 129 PNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 129 ~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G 165 (486)
.+.-.++.++|.|.=+|+-.....||.|..+.
T Consensus 272 -----vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 272 -----VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred -----ceeEEEeccCCCcchhccccccceEEEeecCC
Confidence 22346788999999999999999999987654
No 141
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=58.26 E-value=79 Score=36.32 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=45.6
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeE
Q 011435 138 KGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAAL 214 (486)
Q Consensus 138 ~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rI 214 (486)
..|++.++|.-.++=...+.|...|..+ +.++.|- . ..-+.|. ...+|+|+|++.+++.|
T Consensus 581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t---------------~ti~Sls-FS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-T---------------GTIYSLS-FSRDGNVLASGGADNSV 643 (707)
T ss_pred EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-c---------------CceeEEE-EecCCCEEEecCCCCeE
Confidence 5788888887555444456777777544 4444432 1 0112354 47889999999999999
Q ss_pred EEEECCCC
Q 011435 215 RQISLNQD 222 (486)
Q Consensus 215 r~id~~G~ 222 (486)
+..|....
T Consensus 644 ~lWD~~~~ 651 (707)
T KOG0263|consen 644 RLWDLTKV 651 (707)
T ss_pred EEEEchhh
Confidence 99998754
No 142
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.80 E-value=3.2e+02 Score=31.33 Aligned_cols=160 Identities=14% Similarity=0.199 Sum_probs=96.4
Q ss_pred cceeEEE-ccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCC------ccccCCCCccccccCCcceEEEcCCCCE
Q 011435 76 VPYKIRV-SEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQG------YTGHVDGKPNEARFNHPKGVTMDDKGNL 148 (486)
Q Consensus 76 ~P~GlAV-d~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G------~~G~~dG~~~~a~Ln~P~GIavD~dG~L 148 (486)
+=..||+ ..+.+|+++-.-.++|...|.+... .+ ..++++. ..|..+ .-..+|...+|.+
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~---~~-l~~s~n~~t~~sl~sG~k~---------siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGT---AT-LVASFNNVTVNSLGSGPKD---------SIYSLAMNQTGTI 185 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcc---hh-hhhhccccccccCCCCCcc---------ceeeeecCCcceE
Confidence 3456777 5677888888888899999887421 11 1222110 012222 2356788888889
Q ss_pred EEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 011435 149 YVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCE 225 (486)
Q Consensus 149 YVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~ 225 (486)
+|+=..++.||.+|+.. +..+-| +.|. -..+ +++++|+-.++-+..+.|+..++...-|.
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLrG-------HTdN---------Vr~l-l~~dDGt~~ls~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLRG-------HTDN---------VRVL-LVNDDGTRLLSASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred EEecCcccceEEeccccccceeeeec-------cccc---------eEEE-EEcCCCCeEeecCCCceEEeeecccccee
Confidence 99888889999999876 444433 2221 1234 47889988889999999999999987665
Q ss_pred ecccCCCCcceEEEEeeeeecceEeeeccCCcceEEeecCCCC
Q 011435 226 YQYNSISPTDILMVVGAVLVGYVTCMLQQGFGPFFFSRTQQPS 268 (486)
Q Consensus 226 ~~~~~~~~~~i~t~~g~~~~Gy~l~l~~~~~g~~~~a~~~~~~ 268 (486)
.-.....-. +.++...- -+..-...++.|.++-+.+.+|.
T Consensus 249 ~T~~vH~e~-VWaL~~~~--sf~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 249 ATYIVHKEG-VWALQSSP--SFTHVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred eeEEeccCc-eEEEeeCC--CcceEEecCCCCcEEecccCCch
Confidence 543322211 22222221 11122234666777777776654
No 143
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=55.78 E-value=1.9e+02 Score=27.47 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=55.6
Q ss_pred ceeEEEccCCe-EEEE-ECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeC
Q 011435 77 PYKIRVSEDGE-LFAV-DEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADT 153 (486)
Q Consensus 77 P~GlAVd~dG~-LYVa-D~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~ 153 (486)
-..++++|+|+ +.|+ ......|..++.++. ...-.+. ...+.|.++|+|+ |.++..
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~----~i~~~~~-----------------~~~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK----KIFSFGT-----------------QPRNTISWSPDGRFLVLAGF 120 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCccc----EeEeecC-----------------CCceEEEECCCCCEEEEEEc
Confidence 47889999987 4344 233447777777522 1111121 1345799999999 555554
Q ss_pred C--CCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeC
Q 011435 154 L--NLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDR 209 (486)
Q Consensus 154 ~--n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~ 209 (486)
+ ++.|..+|.+....+..... .....++ -+++|+.+++-.
T Consensus 121 ~n~~G~l~~wd~~~~~~i~~~~~---------------~~~t~~~-WsPdGr~~~ta~ 162 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKISTFEH---------------SDATDVE-WSPDGRYLATAT 162 (194)
T ss_pred cCCCcEEEEEECCCCEEeecccc---------------CcEEEEE-EcCCCCEEEEEE
Confidence 4 45788888776444432110 1134565 577777666654
No 144
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=55.58 E-value=1.7e+02 Score=30.18 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=33.0
Q ss_pred CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCC
Q 011435 85 DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDA 164 (486)
Q Consensus 85 dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~ 164 (486)
++.||+++. ++.++.++...+. .+... .+......+++ +|.||+++ .++.|..+|..
T Consensus 241 ~~~vy~~~~-~g~l~a~d~~tG~-----~~W~~---------------~~~~~~~p~~~-~~~vyv~~-~~G~l~~~d~~ 297 (377)
T TIGR03300 241 GGQVYAVSY-QGRVAALDLRSGR-----VLWKR---------------DASSYQGPAVD-DNRLYVTD-ADGVVVALDRR 297 (377)
T ss_pred CCEEEEEEc-CCEEEEEECCCCc-----EEEee---------------ccCCccCceEe-CCEEEEEC-CCCeEEEEECC
Confidence 566777765 4577778764321 11111 01123344554 56799987 46789999874
Q ss_pred C
Q 011435 165 G 165 (486)
Q Consensus 165 G 165 (486)
.
T Consensus 298 t 298 (377)
T TIGR03300 298 S 298 (377)
T ss_pred C
Confidence 3
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=55.34 E-value=2.9e+02 Score=32.80 Aligned_cols=100 Identities=15% Similarity=0.307 Sum_probs=56.4
Q ss_pred CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCc-ceEEEcCCCCEEEEeCCCCEEEEEcCC
Q 011435 86 GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHP-KGVTMDDKGNLYVADTLNLAIRKIGDA 164 (486)
Q Consensus 86 G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P-~GIavD~dG~LYVAD~~n~rIrkid~~ 164 (486)
++.+++-+.++.|.++..+... .++ .-++|.-| +.++|+.+|+..++=...-.|..++.+
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~-----------------~~~--iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~ 126 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGE-----------------EDT--ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD 126 (933)
T ss_pred ccceEEeeccceEEEeeCCCCC-----------------ccc--eeeeeeccceEEEEecCCcEEEeecCceeEEEEecc
Confidence 4466666677777777654211 111 12345555 589999999988887777778777654
Q ss_pred C---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 165 G---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 165 G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
. ...+-|-. ++ -.+|- .++++++..+-..++.|+.+++..
T Consensus 127 D~s~~~~lrgh~--------ap--------Vl~l~-~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 127 DSSQEKVLRGHD--------AP--------VLQLS-YDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred ccchheeecccC--------Cc--------eeeee-EcCCCCEEEEEecCceEEEEEccc
Confidence 3 44443321 11 01232 355555555555555555555543
No 146
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.25 E-value=2.7e+02 Score=29.07 Aligned_cols=145 Identities=11% Similarity=0.075 Sum_probs=70.6
Q ss_pred EEccCCcEEEEEecCcccCccceeEEEccCC-eEEEEECCCCE-----EEEEcCCCCcccccEEEecccCCccccCCCCc
Q 011435 56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDG-ELFAVDEVNSN-----IVKITPPLSQYSRGRLVAGSFQGYTGHVDGKP 129 (486)
Q Consensus 56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG-~LYVaD~~n~r-----I~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~ 129 (486)
.+...++.....+... ++.|+.|.+.+|| .|.|+..+=.. =.+++.+.-. -..++... .+|.+
T Consensus 82 yd~~~~~~ri~E~~s~--GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~--psL~~ld~-------~sG~l 150 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSH--GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQ--PSLVYLDA-------RSGAL 150 (305)
T ss_pred EECcCCcEEEeEecCC--CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcC--CceEEEec-------CCCce
Confidence 4555555544444433 3459999999999 68888642100 0111111100 00111211 02221
Q ss_pred c-------ccccCCcceEEEcCCCCEEEEeCCCCE-------EEEEcCCC-ceEEcCCCCCCCCcCCCCccccccC-CCc
Q 011435 130 N-------EARFNHPKGVTMDDKGNLYVADTLNLA-------IRKIGDAG-VTTIAGGKSNVAGFRDGPSEDAKFS-NDF 193 (486)
Q Consensus 130 ~-------~a~Ln~P~GIavD~dG~LYVAD~~n~r-------Irkid~~G-v~tiaGg~~g~~G~~DG~~~~a~f~-~P~ 193 (486)
. .-..++=.-|+++.+|.++++-...+. |.....++ +..+.... .....|. +--
T Consensus 151 l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~----------~~~~~l~~Y~g 220 (305)
T PF07433_consen 151 LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPE----------EQWRRLNGYIG 220 (305)
T ss_pred eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCCh----------HHHHhhCCceE
Confidence 1 112234568999999999888754332 22222222 22221100 0001121 233
Q ss_pred eeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 194 DVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 194 gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
.|++.++.+.|.++-...+++..++...
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 5764433346778888889999997653
No 147
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=54.69 E-value=72 Score=27.56 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=33.5
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
.+..+.++.||+|++.|..+..|..=... + -..+..+.+.++|+|.+-|..+
T Consensus 55 ~~~~l~l~~dGnLvl~~~~g~~vW~S~~~-----------~-----------------~~~~~~~~L~ddGnlvl~~~~~ 106 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDGSGTVVWSSNTT-----------R-----------------VNGNYVLVLLDDGNLVLYDSDG 106 (116)
T ss_pred CCEEEEEecCCCeEEEcCCCcEEEEeccc-----------C-----------------CCCceEEEEeCCCCEEEECCCC
Confidence 45667788888888888654333221110 0 0134566788899988877654
Q ss_pred CEEE
Q 011435 156 LAIR 159 (486)
Q Consensus 156 ~rIr 159 (486)
..|+
T Consensus 107 ~~~W 110 (116)
T cd00028 107 NFLW 110 (116)
T ss_pred CEEE
Confidence 4444
No 148
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=54.57 E-value=2e+02 Score=34.07 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=46.3
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA 157 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r 157 (486)
..++|+.+|+..++-+..-.|..++.+.+ +..+++.|. ++ .=.+|.+|++|++.++-..++.
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~--s~~~~lrgh--------~a--------pVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDS--SQEKVLRGH--------DA--------PVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEecccc--chheeeccc--------CC--------ceeeeeEcCCCCEEEEEecCce
Confidence 56788888887777666656666665422 123333332 11 1258999999997777677899
Q ss_pred EEEEcCCC
Q 011435 158 IRKIGDAG 165 (486)
Q Consensus 158 Irkid~~G 165 (486)
|+.++...
T Consensus 162 v~iw~~~~ 169 (933)
T KOG1274|consen 162 VQIWDLQD 169 (933)
T ss_pred EEEEEccc
Confidence 99998654
No 149
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=54.10 E-value=2.6e+02 Score=28.71 Aligned_cols=65 Identities=18% Similarity=0.328 Sum_probs=34.9
Q ss_pred eEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCEE
Q 011435 79 KIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAI 158 (486)
Q Consensus 79 GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rI 158 (486)
+++++ +|.||+.+. ++.|+.+|...+ .++.... .+ + .+ -.+++++ ++.+||++. ++.|
T Consensus 60 ~p~v~-~~~v~v~~~-~g~v~a~d~~tG-----~~~W~~~---~~---~-----~~--~~~p~v~-~~~v~v~~~-~g~l 117 (377)
T TIGR03300 60 QPAVA-GGKVYAADA-DGTVVALDAETG-----KRLWRVD---LD---E-----RL--SGGVGAD-GGLVFVGTE-KGEV 117 (377)
T ss_pred ceEEE-CCEEEEECC-CCeEEEEEccCC-----cEeeeec---CC---C-----Cc--ccceEEc-CCEEEEEcC-CCEE
Confidence 34453 567888875 467889986422 1111100 00 0 01 1234555 567888764 5788
Q ss_pred EEEcC-CC
Q 011435 159 RKIGD-AG 165 (486)
Q Consensus 159 rkid~-~G 165 (486)
+.+|. +|
T Consensus 118 ~ald~~tG 125 (377)
T TIGR03300 118 IALDAEDG 125 (377)
T ss_pred EEEECCCC
Confidence 88886 45
No 150
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.29 E-value=1.5e+02 Score=31.76 Aligned_cols=116 Identities=18% Similarity=0.119 Sum_probs=66.0
Q ss_pred ccceeEEEccC--CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEE
Q 011435 75 VVPYKIRVSED--GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVA 151 (486)
Q Consensus 75 ~~P~GlAVd~d--G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVA 151 (486)
.++.++.+-+. ..-|++-+.-|.|+.+|+... -+-|+-. .+ .=+.=..++.+++|+ ||++
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q----RRPV~~f-----d~--------~E~~is~~~l~p~gn~Iy~g 265 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ----RRPVAQF-----DF--------LENPISSTGLTPSGNFIYTG 265 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCccc----CcceeEe-----cc--------ccCcceeeeecCCCcEEEEe
Confidence 46667777654 457777778888888887522 1222211 00 001224778889998 9999
Q ss_pred eCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 152 DTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 152 D~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
|+. +.+..||..+-.++.-+.-+.. .++.+|. ..+.+.+.-+-.-..-||.+|...
T Consensus 266 n~~-g~l~~FD~r~~kl~g~~~kg~t------------Gsirsih-~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 266 NTK-GQLAKFDLRGGKLLGCGLKGIT------------GSIRSIH-CHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ccc-chhheecccCceeeccccCCcc------------CCcceEE-EcCCCceEEeeccceeEEEeeccc
Confidence 975 6788999776222211000111 1245665 455555555444455677777764
No 151
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=53.03 E-value=3e+02 Score=29.82 Aligned_cols=114 Identities=14% Similarity=0.296 Sum_probs=65.6
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC---
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL--- 154 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~--- 154 (486)
+.+.++.||.++++-....+|+++|+.. .+++... .+.-| ...+..|.+ .+|.|+.+-..
T Consensus 177 ~S~sfn~dGs~l~TtckDKkvRv~dpr~-----~~~v~e~-~~heG----------~k~~Raifl-~~g~i~tTGfsr~s 239 (472)
T KOG0303|consen 177 YSMSFNRDGSLLCTTCKDKKVRVIDPRR-----GTVVSEG-VAHEG----------AKPARAIFL-ASGKIFTTGFSRMS 239 (472)
T ss_pred EEEEeccCCceeeeecccceeEEEcCCC-----CcEeeec-ccccC----------CCcceeEEe-ccCceeeecccccc
Confidence 6778889999999999999999999863 3344321 12222 223334444 47775554332
Q ss_pred CCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeE---EEcCCCeEEEEeCCCCeEEEEECCCC
Q 011435 155 NLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVV---YVRPTCSLLVIDRGNAALRQISLNQD 222 (486)
Q Consensus 155 n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa---~vd~~G~LYVaD~gn~rIr~id~~G~ 222 (486)
+..|...|++.+..=.+ ...|..-+|+. +.++.+-||++-.|.+.||-|....+
T Consensus 240 eRq~aLwdp~nl~eP~~--------------~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 240 ERQIALWDPNNLEEPIA--------------LQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ccceeccCcccccCcce--------------eEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 22343445444211000 00111122332 35566789999999999999988765
No 152
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=53.02 E-value=2.7e+02 Score=28.55 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=73.4
Q ss_pred cEEEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccc
Q 011435 54 NVLQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEAR 133 (486)
Q Consensus 54 svv~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~ 133 (486)
.+.+...|..+.++.-. ..+..+.+..||++...-. .+.|.-.|++. ..+ .. .
T Consensus 168 RLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTia~-gssV~Fwdaks-----f~~-lK----------------s 220 (334)
T KOG0278|consen 168 RLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTIAY-GSSVKFWDAKS-----FGL-LK----------------S 220 (334)
T ss_pred EEEEeccCcEEEEEecC----CCCcceeeccCCCEEEEec-CceeEEecccc-----ccc-ee----------------e
Confidence 33555566666665543 2368889999999554332 34566677642 101 11 1
Q ss_pred cCCcceE---EEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEE
Q 011435 134 FNHPKGV---TMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVI 207 (486)
Q Consensus 134 Ln~P~GI---avD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVa 207 (486)
+..|.-| .+.|+-++|||-.....+++||-+. +..+.- +. + .|-.-+-..++|.+|-+
T Consensus 221 ~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk---gh------------~-gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK---GH------------F-GPVHCVRFSPDGELYAS 284 (334)
T ss_pred ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc---CC------------C-CceEEEEECCCCceeec
Confidence 2244443 3456778999988888999999655 222111 11 1 13222236788999988
Q ss_pred eCCCCeEEEEECC
Q 011435 208 DRGNAALRQISLN 220 (486)
Q Consensus 208 D~gn~rIr~id~~ 220 (486)
-+..+.||.....
T Consensus 285 GSEDGTirlWQt~ 297 (334)
T KOG0278|consen 285 GSEDGTIRLWQTT 297 (334)
T ss_pred cCCCceEEEEEec
Confidence 8888877776654
No 153
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=52.69 E-value=2.3e+02 Score=30.88 Aligned_cols=79 Identities=11% Similarity=0.126 Sum_probs=57.6
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEeCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVADTL 154 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~~ 154 (486)
.-.+|+++|+|....+.+..+.+.+.|..... ...++.+ .-|--..+.+++ .|...|+-.+
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~--~ly~ipA----------------H~nlVS~Vk~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRS--ELYTIPA----------------HSNLVSQVKYSPQEGYFLVTASY 408 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecccc--cceeccc----------------ccchhhheEecccCCeEEEEccc
Confidence 34799999999999998888888888876432 2233333 223446888887 7778888888
Q ss_pred CCEEEEEcCCC---ceEEcCC
Q 011435 155 NLAIRKIGDAG---VTTIAGG 172 (486)
Q Consensus 155 n~rIrkid~~G---v~tiaGg 172 (486)
.+.+...+..+ +.+++|-
T Consensus 409 D~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred CcceeeecCCCcccchhhcCC
Confidence 89998888776 6777764
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=52.64 E-value=2.7e+02 Score=30.71 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=25.5
Q ss_pred cCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC
Q 011435 179 FRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL 219 (486)
Q Consensus 179 ~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~ 219 (486)
|++-+..+..+..+..+++....|.+-|.+.. +||..+.+
T Consensus 472 FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~-grv~l~kL 511 (514)
T KOG2055|consen 472 FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA-GRVHLFKL 511 (514)
T ss_pred eccCCCCCCcccceEEEEecCCCceEEeecCC-CceeeEee
Confidence 44445566677788888876656666666543 56665554
No 155
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.37 E-value=88 Score=35.96 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=61.1
Q ss_pred EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccC
Q 011435 56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFN 135 (486)
Q Consensus 56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln 135 (486)
.+...|..++.+ .|... .=..|++.++|.-+++-...++|..+|..++. .+..+.|. .|
T Consensus 562 WDv~~G~~VRiF-~GH~~--~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~--~v~~l~~H----t~------------ 620 (707)
T KOG0263|consen 562 WDVSTGNSVRIF-TGHKG--PVTALAFSPCGRYLASGDEDGLIKIWDLANGS--LVKQLKGH----TG------------ 620 (707)
T ss_pred EEcCCCcEEEEe-cCCCC--ceEEEEEcCCCceEeecccCCcEEEEEcCCCc--chhhhhcc----cC------------
Confidence 666677766654 45332 13789999999988877788889888875421 11112221 11
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCCC
Q 011435 136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G 165 (486)
.-.-|.+..+|++.|++..++.|+..|..-
T Consensus 621 ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 621 TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 235788899999999999999999998544
No 156
>PTZ00421 coronin; Provisional
Probab=52.28 E-value=3.6e+02 Score=29.74 Aligned_cols=71 Identities=6% Similarity=0.029 Sum_probs=46.7
Q ss_pred ceeEEEccCC-eEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 77 PYKIRVSEDG-ELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 77 P~GlAVd~dG-~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
-..|++.+++ +++++-..++.|..+|..... ....+.+. -..-..|++.++|+++++=..+
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h----------------~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCH----------------SDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCC----------------CCceEEEEEECCCCEEEEecCC
Confidence 3567888765 577766667788888875321 11111111 1124689999999988877778
Q ss_pred CEEEEEcCCC
Q 011435 156 LAIRKIGDAG 165 (486)
Q Consensus 156 ~rIrkid~~G 165 (486)
+.|+.+|...
T Consensus 190 g~IrIwD~rs 199 (493)
T PTZ00421 190 KKLNIIDPRD 199 (493)
T ss_pred CEEEEEECCC
Confidence 9999999754
No 157
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=52.05 E-value=2.9e+02 Score=28.51 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=43.4
Q ss_pred ccceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC--EEEE
Q 011435 75 VVPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN--LYVA 151 (486)
Q Consensus 75 ~~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~--LYVA 151 (486)
...+|+..|. -|.|||+.. +-.|+++..+-.. +....++.+..+.....|. + .-.+|.+.++|. |..+
T Consensus 205 tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep~~-G~~g~~idr~~d~~~LtdD------v-EGltiYy~pnGkGYL~aS 275 (364)
T COG4247 205 TQTEGMVADDETGFLYIAEE-DVAIWKYEAEPNR-GNTGRLIDRIKDLSYLTDD------V-EGLTIYYGPNGKGYLLAS 275 (364)
T ss_pred CcccceeeccccceEEEeec-cceeeecccCCCC-CCccchhhhhcCchhhccc------c-cccEEEEcCCCcEEEEEe
Confidence 4668888884 689999985 4579999765221 1111111111110000000 0 113566667665 5556
Q ss_pred eCCCCEEEEEcCCC
Q 011435 152 DTLNLAIRKIGDAG 165 (486)
Q Consensus 152 D~~n~rIrkid~~G 165 (486)
-.+|+.-..+...|
T Consensus 276 SQGnNtya~y~ReG 289 (364)
T COG4247 276 SQGNNTYAAYTREG 289 (364)
T ss_pred cCCCceEEEEEeeC
Confidence 66677766676655
No 158
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=51.43 E-value=2.8e+02 Score=28.23 Aligned_cols=161 Identities=18% Similarity=0.254 Sum_probs=85.1
Q ss_pred CCCcE--EEccCCcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCc------------------ccc
Q 011435 51 ADGNV--LQFENGYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQ------------------YSR 110 (486)
Q Consensus 51 ~~gsv--v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~------------------~~~ 110 (486)
.+..+ .++..|.+.+.+..-.. .-+.+.++.+..+.++-+....|+.+|=.... ...
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~a---qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHLA---QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred CCceEEEEEcccCeeeeecccccc---eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence 34444 67778877777654221 23667776666677766655555555432110 111
Q ss_pred cEEEecccCCcc---ccCCCCccccccCCc-ceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCC
Q 011435 111 GRLVAGSFQGYT---GHVDGKPNEARFNHP-KGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGP 183 (486)
Q Consensus 111 ~~~vaG~~~G~~---G~~dG~~~~a~Ln~P-~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~ 183 (486)
-.+++|+..|.- .-..|.+...-|.+| +.+.+.++|+.-.+-..+..|+.+|.+. +..+.|-.+. .|.
T Consensus 156 heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~--eyk--- 230 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM--EYK--- 230 (307)
T ss_pred cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc--eee---
Confidence 234444432211 112333344456777 6899999999888888889999999765 3444443221 110
Q ss_pred ccccccC-CCceeEEEcCCCeEEEEeCCCC-eEEEEECC
Q 011435 184 SEDAKFS-NDFDVVYVRPTCSLLVIDRGNA-ALRQISLN 220 (486)
Q Consensus 184 ~~~a~f~-~P~gIa~vd~~G~LYVaD~gn~-rIr~id~~ 220 (486)
.+-.|+ +...++--..+|.+|+=|--+. .|.++...
T Consensus 231 -ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~ 268 (307)
T KOG0316|consen 231 -LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV 268 (307)
T ss_pred -eeeeecccceeEEeccCCceEEEEEeccceeeeeeccC
Confidence 111122 2233433445667777775443 34444433
No 159
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=50.68 E-value=1.5e+02 Score=33.13 Aligned_cols=75 Identities=8% Similarity=0.039 Sum_probs=48.1
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA 157 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r 157 (486)
..+++|+.|.=+++.+....|..+|..|-- ...+. ...+..+.-+.-+.+.+...|+.+++=+++..
T Consensus 171 sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd-as~~~------------fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 171 SALAVDPSGARFVSGSLDYTVKFWDFQGMD-ASMRS------------FRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EEeeecCCCceeeeccccceEEEEeccccc-ccchh------------hhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 467888888877777777777777765311 00000 11111222233467888889997777778889
Q ss_pred EEEEcCCC
Q 011435 158 IRKIGDAG 165 (486)
Q Consensus 158 Irkid~~G 165 (486)
+..+|.+|
T Consensus 238 akl~DRdG 245 (641)
T KOG0772|consen 238 AKLLDRDG 245 (641)
T ss_pred eeEEccCC
Confidence 99999999
No 160
>PRK01029 tolB translocation protein TolB; Provisional
Probab=50.53 E-value=3.5e+02 Score=29.03 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=17.4
Q ss_pred ceEEEcCCCC-E-EEEeCC-CCEEEEEcCC
Q 011435 138 KGVTMDDKGN-L-YVADTL-NLAIRKIGDA 164 (486)
Q Consensus 138 ~GIavD~dG~-L-YVAD~~-n~rIrkid~~ 164 (486)
...++++||. | |++|.. +.+|++++.+
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 3568999998 4 555543 3468877653
No 161
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.69 E-value=2.6e+02 Score=32.40 Aligned_cols=130 Identities=10% Similarity=0.003 Sum_probs=75.6
Q ss_pred cceeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435 76 VPYKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL 154 (486)
Q Consensus 76 ~P~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 154 (486)
+=++|++.| |.+.||+-+-.++|+..+..... +.....- + .--+.||+.|||...|.=+.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl---------------~-~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---VVDWNDL---------------R-DLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCe---eEeehhh---------------h-hhheeEEeccCCceEEEEEe
Confidence 357899998 66789998888888887754211 1111110 0 13468999999998888899
Q ss_pred CCEEEEEcCCCceEEcCCC-CCCCCcCCCCccccccCCCceeEEEcCCC-eEEEEeCCCCeEEEEEC--CCCceeecccC
Q 011435 155 NLAIRKIGDAGVTTIAGGK-SNVAGFRDGPSEDAKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISL--NQDDCEYQYNS 230 (486)
Q Consensus 155 n~rIrkid~~Gv~tiaGg~-~g~~G~~DG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~--~G~~~~~~~~~ 230 (486)
++..+.++..|........ .... + ..++=..-+|+-+...+- .|.|+- ...|||.|+. ...++.+-+-.
T Consensus 472 ~G~C~fY~t~~lk~~~~~~I~~~~----~--Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv~KfKG~~ 544 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDFHIRLHN----K--KKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLVHKFKGFR 544 (712)
T ss_pred ccEEEEEEccCCeEEEeeeEeecc----C--ccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhhhhhcccc
Confidence 9999999988822111000 0000 0 001111234555443222 466655 4468999999 44455555443
Q ss_pred C
Q 011435 231 I 231 (486)
Q Consensus 231 ~ 231 (486)
.
T Consensus 545 n 545 (712)
T KOG0283|consen 545 N 545 (712)
T ss_pred c
Confidence 3
No 162
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.98 E-value=3.2e+02 Score=28.23 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=42.3
Q ss_pred EEcC-CCCEEEEeCCCCEEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEE
Q 011435 141 TMDD-KGNLYVADTLNLAIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQI 217 (486)
Q Consensus 141 avD~-dG~LYVAD~~n~rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~i 217 (486)
++++ +|.||+|-+. ++|..++++. .+++.--.-+.+-|.. ..+-.|. +..-.-+|+|.--|.....||++
T Consensus 142 ~i~~g~~sly~a~t~-G~vlavt~~~~~~~~~w~~~~~~PiF~s-----plcv~~s-v~i~~VdG~l~~f~~sG~qvwr~ 214 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITA-GAVLAVTKNPYSSTEFWAATRFGPIFAS-----PLCVGSS-VIITTVDGVLTSFDESGRQVWRP 214 (354)
T ss_pred eecCCCceEEEEecc-ceEEEEccCCCCcceehhhhcCCccccC-----ceeccce-EEEEEeccEEEEEcCCCcEEEee
Confidence 5666 7889999875 7777777665 3333211000111100 0122222 22233468888778777889999
Q ss_pred ECCCC
Q 011435 218 SLNQD 222 (486)
Q Consensus 218 d~~G~ 222 (486)
...|-
T Consensus 215 ~t~Gp 219 (354)
T KOG4649|consen 215 ATKGP 219 (354)
T ss_pred cCCCc
Confidence 88875
No 163
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=48.83 E-value=1.3e+02 Score=30.92 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=48.7
Q ss_pred EEEcCCCCEEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC
Q 011435 140 VTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL 219 (486)
Q Consensus 140 IavD~dG~LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~ 219 (486)
+++.++|+|..+=..+.--.|=..|...++.|.-. . -.| .+..-.-++ -.+||.|.+....++.|+.||+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcq-V--pkD------~~PQWRkl~-WSpD~tlLa~a~S~G~i~vfdl 72 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQ-V--PKD------PNPQWRKLA-WSPDCTLLAYAESTGTIRVFDL 72 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEe-c--CCC------CCchheEEE-ECCCCcEEEEEcCCCeEEEEec
Confidence 56778888554433332222334455555554311 0 001 111123466 5788999999999999999999
Q ss_pred CCCceeecccCC-CCcce
Q 011435 220 NQDDCEYQYNSI-SPTDI 236 (486)
Q Consensus 220 ~G~~~~~~~~~~-~~~~i 236 (486)
.|..+-...... ++++.
T Consensus 73 ~g~~lf~I~p~~~~~~d~ 90 (282)
T PF15492_consen 73 MGSELFVIPPAMSFPGDL 90 (282)
T ss_pred ccceeEEcCcccccCCcc
Confidence 986554443332 34444
No 164
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=48.82 E-value=3.8e+02 Score=29.85 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=10.1
Q ss_pred eEEEEeCCCCeEEEEECC
Q 011435 203 SLLVIDRGNAALRQISLN 220 (486)
Q Consensus 203 ~LYVaD~gn~rIr~id~~ 220 (486)
+|-+.|..++.|..++..
T Consensus 470 ~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 470 SIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred eEEEEecCCCeEEEecCC
Confidence 455556666666555544
No 165
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=48.30 E-value=2.7e+02 Score=30.95 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=21.2
Q ss_pred eEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 195 VVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 195 Ia~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
+++......|||.|-.|+.++.|+...
T Consensus 416 ~vvaNdr~el~vididngnv~~idkS~ 442 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVRLIDKSE 442 (668)
T ss_pred EEEEcCceEEEEEEecCCCeeEecccc
Confidence 444566678999999999999998764
No 166
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=47.11 E-value=2.1e+02 Score=33.18 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=63.2
Q ss_pred EEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCEEE
Q 011435 80 IRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIR 159 (486)
Q Consensus 80 lAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIr 159 (486)
++++++|..+++-. +++|..+|..++. .....|. ......=+.+++++|+++.++=..+..++
T Consensus 25 ~~~s~nG~~L~t~~-~d~Vi~idv~t~~---~~l~s~~-------------~ed~d~ita~~l~~d~~~L~~a~rs~llr 87 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-GDRVIIIDVATGS---IALPSGS-------------NEDEDEITALALTPDEEVLVTASRSQLLR 87 (775)
T ss_pred eeECCCCCEEEEec-CceEEEEEccCCc---eecccCC-------------ccchhhhheeeecCCccEEEEeeccceEE
Confidence 89999999766654 4588888876432 1111121 12233457899999988555544556666
Q ss_pred EEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCcee
Q 011435 160 KIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCE 225 (486)
Q Consensus 160 kid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~ 225 (486)
.++... +...-... ..|.-+..+++.|.|.-+-...++|++.|..+..|+
T Consensus 88 v~~L~tgk~irswKa~H----------------e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 88 VWSLPTGKLIRSWKAIH----------------EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred EEEcccchHhHhHhhcc----------------CCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 666433 22222110 123222235566655555555677777777766544
No 167
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=46.88 E-value=1.5e+02 Score=25.49 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=34.3
Q ss_pred cceEEEcCCCCEEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeE
Q 011435 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAAL 214 (486)
Q Consensus 137 P~GIavD~dG~LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rI 214 (486)
+.-+.++.+|+|++.|..+..|+.=+.. .+ ..+..+ .+.++|+|.+-|..+..|
T Consensus 55 ~~~l~l~~dGnLvl~~~~g~~vW~S~t~-----~~------------------~~~~~~-~L~ddGnlvl~~~~~~~~ 108 (114)
T smart00108 55 SCTLTLQSDGNLVLYDGDGRVVWSSNTT-----GA------------------NGNYVL-VLLDDGNLVIYDSDGNFL 108 (114)
T ss_pred CEEEEEeCCCCEEEEeCCCCEEEEeccc-----CC------------------CCceEE-EEeCCCCEEEECCCCCEE
Confidence 4678899999999999866666542221 01 012233 477889998888755443
No 168
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=46.82 E-value=3.5e+02 Score=28.00 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=33.0
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEc-CCCceEEcCCCCC--CCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCC
Q 011435 136 HPKGVTMDDKGNLYVADTLNLAIRKIG-DAGVTTIAGGKSN--VAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNA 212 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n~rIrkid-~~Gv~tiaGg~~g--~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~ 212 (486)
+=..|.++++|+||++.. .+.|+.-+ .+...+.-..... ..+|. ..+..+..|..+.++..+|.||++.-+..
T Consensus 188 riq~~gf~~~~~lw~~~~-Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~---~ld~a~~~~~~~wa~gg~G~l~~S~DgGk 263 (302)
T PF14870_consen 188 RIQSMGFSPDGNLWMLAR-GGQIQFSDDPDDGETWSEPIIPIKTNGYG---ILDLAYRPPNEIWAVGGSGTLLVSTDGGK 263 (302)
T ss_dssp -EEEEEE-TTS-EEEEET-TTEEEEEE-TTEEEEE---B-TTSS--S----EEEEEESSSS-EEEEESTT-EEEESSTTS
T ss_pred eehhceecCCCCEEEEeC-CcEEEEccCCCCccccccccCCcccCcee---eEEEEecCCCCEEEEeCCccEEEeCCCCc
Confidence 345889999999999884 46666555 2223332211000 11110 01112333445555666666776665544
Q ss_pred eEE
Q 011435 213 ALR 215 (486)
Q Consensus 213 rIr 215 (486)
.-.
T Consensus 264 tW~ 266 (302)
T PF14870_consen 264 TWQ 266 (302)
T ss_dssp S-E
T ss_pred cce
Confidence 433
No 169
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=46.51 E-value=31 Score=35.58 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=12.8
Q ss_pred cEEEccCCcEEEEEecCcc
Q 011435 54 NVLQFENGYLVETVIEGNE 72 (486)
Q Consensus 54 svv~~~~G~~vetv~~G~~ 72 (486)
..+.++.|+.+..+.-|..
T Consensus 55 T~I~f~~gE~I~~va~GDt 73 (292)
T PRK13861 55 LVVTFGANETVTAVAVSNS 73 (292)
T ss_pred EEEEECCCCEEEEeccccc
Confidence 3477788877777766643
No 170
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=45.82 E-value=2.9e+02 Score=31.84 Aligned_cols=69 Identities=13% Similarity=0.054 Sum_probs=42.1
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
=.||++-+++.+.=|+ ..+.|+..+.+|.. ....-|. -+.=.-|....++.++|+-..+.
T Consensus 182 VRgL~vl~~~~flScs-NDg~Ir~w~~~ge~---l~~~~gh----------------tn~vYsis~~~~~~~Ivs~gEDr 241 (745)
T KOG0301|consen 182 VRGLAVLDDSHFLSCS-NDGSIRLWDLDGEV---LLEMHGH----------------TNFVYSISMALSDGLIVSTGEDR 241 (745)
T ss_pred eeeeEEecCCCeEeec-CCceEEEEeccCce---eeeeecc----------------ceEEEEEEecCCCCeEEEecCCc
Confidence 4788988776665554 45678888876532 2333332 11233555555667888877777
Q ss_pred EEEEEcCCC
Q 011435 157 AIRKIGDAG 165 (486)
Q Consensus 157 rIrkid~~G 165 (486)
.++..+.+-
T Consensus 242 tlriW~~~e 250 (745)
T KOG0301|consen 242 TLRIWKKDE 250 (745)
T ss_pred eEEEeecCc
Confidence 777766554
No 171
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=45.47 E-value=2.5e+02 Score=28.97 Aligned_cols=27 Identities=37% Similarity=0.641 Sum_probs=21.1
Q ss_pred cceEEEcC-CCCEEEEeCCCCEEEEEcCC
Q 011435 137 PKGVTMDD-KGNLYVADTLNLAIRKIGDA 164 (486)
Q Consensus 137 P~GIavD~-dG~LYVAD~~n~rIrkid~~ 164 (486)
-.|+..|. .|.|||++. +-.||++..+
T Consensus 207 TEG~VaDdEtG~LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 207 TEGMVADDETGFLYIAEE-DVAIWKYEAE 234 (364)
T ss_pred ccceeeccccceEEEeec-cceeeecccC
Confidence 35888876 788999996 5789999743
No 172
>PLN00181 protein SPA1-RELATED; Provisional
Probab=45.27 E-value=5.4e+02 Score=29.76 Aligned_cols=109 Identities=10% Similarity=-0.023 Sum_probs=60.2
Q ss_pred eeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC-CCCEEEEeCCC
Q 011435 78 YKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD-KGNLYVADTLN 155 (486)
Q Consensus 78 ~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~-dG~LYVAD~~n 155 (486)
.++++++ ++.++++-..++.|..+|..... ....+.+. -..-..|++++ +|+++++=..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H----------------~~~V~~l~~~p~~~~~L~Sgs~D 597 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEH----------------EKRVWSIDYSSADPTLLASGSDD 597 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCC----------------CCCEEEEEEcCCCCCEEEEEcCC
Confidence 4566654 35555555556777777765321 11111111 01235888886 77877776677
Q ss_pred CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
+.|+.+|... +.++.... ....+.+...+|.++++-..++.|+.++...
T Consensus 598 g~v~iWd~~~~~~~~~~~~~~-----------------~v~~v~~~~~~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 598 GSVKLWSINQGVSIGTIKTKA-----------------NICCVQFPSESGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred CEEEEEECCCCcEEEEEecCC-----------------CeEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 8888888654 33332210 1123333345566666666677777777653
No 173
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=45.20 E-value=1.2e+02 Score=32.14 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=54.5
Q ss_pred ccCccceeEEEccCCeEEEEECCCC-----EEEEEcCCCCcccccEEEecc----cCCccccCCCCccccccCCcceEEE
Q 011435 72 EIGVVPYKIRVSEDGELFAVDEVNS-----NIVKITPPLSQYSRGRLVAGS----FQGYTGHVDGKPNEARFNHPKGVTM 142 (486)
Q Consensus 72 ~~~~~P~GlAVd~dG~LYVaD~~n~-----rI~kid~~g~~~~~~~~vaG~----~~G~~G~~dG~~~~a~Ln~P~GIav 142 (486)
..+.+|+.|+.-.+|++|++.-..+ .|+-++..++ ...+++.. ..| .|.+-| .-..+.+
T Consensus 180 tgGTf~yNmgAl~nGH~Y~asLSG~~~SPLKiY~w~tPts---~PevIa~inV~~I~g-Ag~RhG--------Dn~S~nl 247 (442)
T PF15416_consen 180 TGGTFSYNMGALVNGHSYLASLSGGKASPLKIYYWETPTS---APEVIADINVGDIPG-AGNRHG--------DNFSLNL 247 (442)
T ss_pred cCcccccchhhhcCCeEEEEeccCCCCCceEEEEecCCCC---CceEEEeeeeccCcc-cccccC--------cceeEEe
Confidence 3346788999888999999986554 4777776544 35555532 211 111111 2356788
Q ss_pred cCCCC--EEEEeCCCCEEEEEcCCC
Q 011435 143 DDKGN--LYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 143 D~dG~--LYVAD~~n~rIrkid~~G 165 (486)
|.+|| +|+.|.....|.|++-.+
T Consensus 248 D~nGnGyiFFgdnaat~ilR~~vsn 272 (442)
T PF15416_consen 248 DENGNGYIFFGDNAATNILRFTVSN 272 (442)
T ss_pred ccCCceEEEecCCccceEEEEEccC
Confidence 88777 999998888899887655
No 174
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=44.79 E-value=1.2e+02 Score=33.61 Aligned_cols=67 Identities=12% Similarity=0.147 Sum_probs=50.3
Q ss_pred ceEEEcCCC-CEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435 138 KGVTMDDKG-NLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA 213 (486)
Q Consensus 138 ~GIavD~dG-~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r 213 (486)
.||++.+.. .|+|+=.+..+|..+|... ..+++- ..|..-+...++|.++++-..+++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y------------------~~Plstvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY------------------SHPLSTVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceeee------------------cCCcceeeecCCceEEEeecCCce
Confidence 599999944 4888888889999998654 334432 235443346889999999999999
Q ss_pred EEEEECCCC
Q 011435 214 LRQISLNQD 222 (486)
Q Consensus 214 Ir~id~~G~ 222 (486)
|..+|..+.
T Consensus 274 ~i~YD~R~~ 282 (673)
T KOG4378|consen 274 LIAYDMRST 282 (673)
T ss_pred EEEEecccC
Confidence 999999874
No 175
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=44.69 E-value=1.1e+02 Score=26.38 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=34.9
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEE
Q 011435 136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALR 215 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr 215 (486)
.+.-+.++.+|+|++.|..+..|+.=+..+ +. .+. .+.+.++|+|.+-+..+..|+
T Consensus 55 ~~~~l~l~~dGnLvl~~~~g~~vW~S~~~~-----~~------------------~~~-~~~L~ddGnlvl~~~~~~~~W 110 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDGSGTVVWSSNTTR-----VN------------------GNY-VLVLLDDGNLVLYDSDGNFLW 110 (116)
T ss_pred CCEEEEEecCCCeEEEcCCCcEEEEecccC-----CC------------------Cce-EEEEeCCCCEEEECCCCCEEE
Confidence 456788999999999997665555322211 00 112 334678898888887654444
No 176
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=44.11 E-value=32 Score=33.36 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=11.1
Q ss_pred cCCe-EEEEECCCCEEEEEcC
Q 011435 84 EDGE-LFAVDEVNSNIVKITP 103 (486)
Q Consensus 84 ~dG~-LYVaD~~n~rI~kid~ 103 (486)
.||+ +|+-|...+.+.+...
T Consensus 85 sdG~~v~iydp~~~q~~~~~~ 105 (211)
T COG2834 85 SDGKTVWIYDPDLEQVTKTWL 105 (211)
T ss_pred ECCCEEEEECCCCceEEEEec
Confidence 4444 6666666655555544
No 177
>PF05586 Ant_C: Anthrax receptor C-terminus region; InterPro: IPR008399 Anthrax is an acute disease in humans and animals caused by the bacterium Bacillus anthracis, which can be lethal. There are effective vaccines against anthrax, and some forms of the disease respond well to antibiotic treatment. The anthrax bacillus is one of only a few that can form long-lived spores. The anthrax toxin consists of the proteins protective antigen (PA) lethal factor (LF) and oedema factor (EF). The first step of toxin entry into host cells is the recognition by PA of a receptor on the surface of the target cell. The subsequent cleavage of receptor-bound PA enables EF and LF to bind and form a heptameric PA63 pre-pore, which triggers endocytosis. PA has been shown to bind to two cellular receptors: anthrax toxin receptor/tumour endothelial marker 8 and capillary morphogenesis protein 2 (CMG2), which are closely related host cell receptors. Both bind to PA with high affinity and are capable of mediating toxicity [, ], and both are type 1 membrane proteins that include an approximately 200-aa extracellular von Willebrand factor A (VWA) domain with a metal ion-dependent adhesion site (MIDAS) motif []. This region is found in the putatively cytoplasmic C terminus of the anthrax receptor.; GO: 0004872 receptor activity, 0016021 integral to membrane
Probab=43.62 E-value=24 Score=30.06 Aligned_cols=38 Identities=26% Similarity=0.552 Sum_probs=24.9
Q ss_pred cccccCCCCCCCCccccccccCCCCcccccccCCCCCCCCCCCC
Q 011435 343 RDTLRMPEDEAAPPVVQRQKSAVPLSETHQVRTPGTGDKYPDMK 386 (486)
Q Consensus 343 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (486)
.-...|||+|.+|++..+ +|++ ...|.|+++|-|...+
T Consensus 20 NA~V~mpeee~E~~~~~~----~~~~--~~~~~~~~~kWYtPIK 57 (95)
T PF05586_consen 20 NAVVKMPEEEFEPPMIRP----PPKP--PPTHKPPQRKWYTPIK 57 (95)
T ss_pred CceEeCCcccccCccCCC----CCCC--CCCCCCCCCcCccCcc
Confidence 346789988888875542 1221 2447777888888766
No 178
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=40.78 E-value=4.4e+02 Score=27.39 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=75.5
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
-.++++.+||+..++-+-.+.++..|..++. ....+.|.. ..-.++++++|..-.|+-....
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~----------------~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGE--STRRFVGHT----------------KDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCc--EEEEEEecC----------------CceEEEEecCCCceeecCCCcc
Confidence 5788999999999988888888888987643 234455531 1246899999988888888888
Q ss_pred EEEEEcCCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCe-EEEEeCCCCeEEEEECCC
Q 011435 157 AIRKIGDAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCS-LLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 157 rIrkid~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gn~rIr~id~~G 221 (486)
.|...|.-| ..++..... .+ .-+.+.+++...+ ++|.-.....|+..++++
T Consensus 128 Tiklwnt~g~ck~t~~~~~~--~~------------WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 128 TIKLWNTLGVCKYTIHEDSH--RE------------WVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred eeeeeeecccEEEEEecCCC--cC------------cEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 888888777 556654310 11 1235555554434 444444556777777776
No 179
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=40.23 E-value=4.8e+02 Score=27.70 Aligned_cols=73 Identities=12% Similarity=0.034 Sum_probs=46.6
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTL 154 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~ 154 (486)
.-.+|++.+||.-+++-.+...|+.++.+- ...-.-.+ ....-.+.+|+-+++.+|-. +.|+-..
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D-----F~~~eHr~---------~R~nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRD-----FENKEHRC---------IRQNVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecch-----hhhhhhhH---------hhccccCCCceEEEECCCcceEEEEEcc
Confidence 358999999999888877777788777641 10000000 00123456899999999876 6666656
Q ss_pred CCEEEEEc
Q 011435 155 NLAIRKIG 162 (486)
Q Consensus 155 n~rIrkid 162 (486)
.+.++++-
T Consensus 154 g~~l~vyk 161 (420)
T KOG2096|consen 154 GNKLCVYK 161 (420)
T ss_pred CCEEEEEE
Confidence 66666553
No 180
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=40.00 E-value=3.8e+02 Score=29.42 Aligned_cols=67 Identities=12% Similarity=0.196 Sum_probs=46.1
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeE
Q 011435 138 KGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAAL 214 (486)
Q Consensus 138 ~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rI 214 (486)
+.+++++||.|+.+-+.++.|..+|... +..|-|- + |+ -..|. ...+|.-.++....+.|
T Consensus 351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpgh-t-------~~--------vk~i~-FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGH-T-------GP--------VKAIS-FSENGYWLATAADDGSV 413 (506)
T ss_pred EEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCC-C-------Cc--------eeEEE-eccCceEEEEEecCCeE
Confidence 4678999999999999999998888654 3333221 1 10 12355 56777777777777778
Q ss_pred EEEECCC
Q 011435 215 RQISLNQ 221 (486)
Q Consensus 215 r~id~~G 221 (486)
..+|+..
T Consensus 414 ~lwDLRK 420 (506)
T KOG0289|consen 414 KLWDLRK 420 (506)
T ss_pred EEEEehh
Confidence 8888775
No 181
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=39.84 E-value=3.2e+02 Score=25.54 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=35.0
Q ss_pred EcCCCCEEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 142 MDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 142 vD~dG~LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
+-.+|.||++..... +..+|...-..+.-. .+..+..+. ...++.||+.+ ..++|..+|+..
T Consensus 170 ~~~~~~v~~~~~~g~-~~~~d~~tg~~~w~~---------------~~~~~~~~~-~~~~~~l~~~~-~~~~l~~~d~~t 231 (238)
T PF13360_consen 170 VISDGRVYVSSGDGR-VVAVDLATGEKLWSK---------------PISGIYSLP-SVDGGTLYVTS-SDGRLYALDLKT 231 (238)
T ss_dssp ECCTTEEEEECCTSS-EEEEETTTTEEEEEE---------------CSS-ECECE-ECCCTEEEEEE-TTTEEEEEETTT
T ss_pred EEECCEEEEEcCCCe-EEEEECCCCCEEEEe---------------cCCCccCCc-eeeCCEEEEEe-CCCEEEEEECCC
Confidence 333568888886543 555565441111110 011223322 45678888888 678888888775
Q ss_pred C
Q 011435 222 D 222 (486)
Q Consensus 222 ~ 222 (486)
.
T Consensus 232 G 232 (238)
T PF13360_consen 232 G 232 (238)
T ss_dssp T
T ss_pred C
Confidence 3
No 182
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=39.37 E-value=1.9e+02 Score=30.40 Aligned_cols=116 Identities=9% Similarity=0.054 Sum_probs=68.6
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccc-cEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSR-GRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~-~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
+.|.+-|...|+++.+..+.|.-+|-......+ .+++-. -..-..|.+.|.|....+-+.-.
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-----------------~~~vrsiSfHPsGefllvgTdHp 238 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-----------------TEPVRSISFHPSGEFLLVGTDHP 238 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc-----------------cceeeeEeecCCCceEEEecCCC
Confidence 456777777788888877777777753110000 001100 01124789999999666666666
Q ss_pred EEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 157 AIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 157 rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
.++.+|.+...-++...+ ..+. -..-+.+- -.+.|+|||+-+..+.|+.+|--.
T Consensus 239 ~~rlYdv~T~QcfvsanP-d~qh---------t~ai~~V~-Ys~t~~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 239 TLRLYDVNTYQCFVSANP-DDQH---------TGAITQVR-YSSTGSLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred ceeEEeccceeEeeecCc-cccc---------ccceeEEE-ecCCccEEEEeccCCcEEeecccc
Confidence 777788776333332110 0011 11123454 478899999999999999998544
No 183
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=39.20 E-value=2.7e+02 Score=32.79 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=61.4
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
=.|||+|.-+.+.|+-...+-+...+.+.. ++.+... -| ..+.+|.....-.++++-.+.-
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k------~l~~~l~--l~-----------~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKK------VLKKSLR--LG-----------SSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCc------ceeeeec--cC-----------CCcceeeeeehhhhhhhhcCce
Confidence 378999988788887666665665665432 1222100 00 0244555554434444444456
Q ss_pred EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
.|+.+|... +..+.|-. +.-++++ ..++|+=.|+..-.+.||.+|+..
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~----------------nritd~~-FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHG----------------NRITDMT-FSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eEEEEEchhhhhhHHhhccc----------------cceeeeE-eCCCCcEEEEeecCCcEEEEeccC
Confidence 777777655 34444321 1235777 466676556666668899998764
No 184
>PRK13616 lipoprotein LpqB; Provisional
Probab=38.19 E-value=6.4e+02 Score=28.58 Aligned_cols=76 Identities=11% Similarity=0.182 Sum_probs=40.7
Q ss_pred CcceEEEcCCCC--EEEEeCCCCEEEE---Ec-CCCceEEcCCCCCCCCcCCCCccccccCC-CceeEEEcCCCeEEEEe
Q 011435 136 HPKGVTMDDKGN--LYVADTLNLAIRK---IG-DAGVTTIAGGKSNVAGFRDGPSEDAKFSN-DFDVVYVRPTCSLLVID 208 (486)
Q Consensus 136 ~P~GIavD~dG~--LYVAD~~n~rIrk---id-~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~-P~gIa~vd~~G~LYVaD 208 (486)
....+.+.+||. .++++ ++|+. +. .+|...+..-.. -+ ..+.. +..+.+ -.++.|+|.-
T Consensus 449 ~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~--l~--------~~l~~~~~~l~W-~~~~~L~V~~ 514 (591)
T PRK13616 449 PISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQYALTNPRE--VG--------PGLGDTAVSLDW-RTGDSLVVGR 514 (591)
T ss_pred CcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCceeecccEE--ee--------cccCCccccceE-ecCCEEEEEe
Confidence 477899999998 44553 46654 32 334322210000 00 01112 345654 3456677765
Q ss_pred C-CCCeEEEEECCCCcee
Q 011435 209 R-GNAALRQISLNQDDCE 225 (486)
Q Consensus 209 ~-gn~rIr~id~~G~~~~ 225 (486)
. .+..|+.+.++|....
T Consensus 515 ~~~~~~v~~v~vDG~~~~ 532 (591)
T PRK13616 515 SDPEHPVWYVNLDGSNSD 532 (591)
T ss_pred cCCCCceEEEecCCcccc
Confidence 4 4467999999986444
No 185
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=37.61 E-value=1.3e+02 Score=32.87 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=20.5
Q ss_pred CcceEEEcCCCC-EEEEeCCCCEEEEEcCCC
Q 011435 136 HPKGVTMDDKGN-LYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 136 ~P~GIavD~dG~-LYVAD~~n~rIrkid~~G 165 (486)
-+++|.++-|.. |||+.+..+.||.+|-..
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 467888888777 999999999999998543
No 186
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=37.37 E-value=3e+02 Score=29.53 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=64.1
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
.-..|+|||.++-|++.+....|-.+|..+++ -..++.|. ...-.|++|+..--..|+-...
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~--LkltltGh----------------i~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--LKLTLTGH----------------IETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCe--EEEeecch----------------hheeeeeeecccCceEEEecCC
Confidence 45689999975666666666667777876432 11233442 2245689998754455565667
Q ss_pred CEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCC
Q 011435 156 LAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 156 ~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G 221 (486)
..|...|..- |..+-|- |+.-..+. +.+.-.+.++-.....+|+.|...
T Consensus 215 k~VKCwDLe~nkvIR~YhGH----------------lS~V~~L~-lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGH----------------LSGVYCLD-LHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred CeeEEEechhhhhHHHhccc----------------cceeEEEe-ccccceeEEecCCcceEEEeeecc
Confidence 7888888654 3444332 22233443 344445556665555566665554
No 187
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=37.10 E-value=3e+02 Score=32.15 Aligned_cols=111 Identities=20% Similarity=0.278 Sum_probs=62.3
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC-C
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL-N 155 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~-n 155 (486)
-++|+||+.-.+.++-.-..+|..++...++ ..+.+-|. .++ +| .+.-+..||.| ||+|-.. +
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgK--q~k~FKgs----~~~-eG--------~lIKv~lDPSg-iY~atScsd 662 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGK--QVKSFKGS----RDH-EG--------DLIKVILDPSG-IYLATSCSD 662 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccc--eeeeeccc----ccC-CC--------ceEEEEECCCc-cEEEEeecC
Confidence 4789999876655554445567777654322 23344342 221 34 46678889887 5665544 4
Q ss_pred CEEEEEcCC-C--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435 156 LAIRKIGDA-G--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220 (486)
Q Consensus 156 ~rIrkid~~-G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~ 220 (486)
..+-.+|-- | +.+..|-.. --+|+. ...|+.=+|+-++.+.|.+..+.
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE----------------~VTG~k-F~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSE----------------AVTGVK-FLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CceEEEEeccchhhhhhcCcch----------------heeeee-ecccchhheeecCCceEEEEECc
Confidence 445555532 2 544444311 123554 34566666777777777776655
No 188
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=36.89 E-value=5.2e+02 Score=31.08 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=47.3
Q ss_pred ceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeE
Q 011435 138 KGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAAL 214 (486)
Q Consensus 138 ~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rI 214 (486)
.+++.++++.+.|+=...+.|..+|... ++++-|- -..+-|++ .|+-|.-+-+.++.+.|
T Consensus 133 ~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H----------------~s~VKGvs-~DP~Gky~ASqsdDrti 195 (942)
T KOG0973|consen 133 LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH----------------QSLVKGVS-WDPIGKYFASQSDDRTL 195 (942)
T ss_pred ceeccCCCccEEEEecccceEEEEccccceeeeeeecc----------------cccccceE-ECCccCeeeeecCCceE
Confidence 4788999999999988899999998766 3444332 23456776 68888877777777776
Q ss_pred EEEEC
Q 011435 215 RQISL 219 (486)
Q Consensus 215 r~id~ 219 (486)
.+++.
T Consensus 196 kvwrt 200 (942)
T KOG0973|consen 196 KVWRT 200 (942)
T ss_pred EEEEc
Confidence 66663
No 189
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.98 E-value=5.4e+02 Score=27.03 Aligned_cols=48 Identities=13% Similarity=-0.038 Sum_probs=28.2
Q ss_pred EEccCCcEEEEEecCcccCccceeEEEccC-C-eEEEEECCCCEEEEEcCCCCc
Q 011435 56 LQFENGYLVETVIEGNEIGVVPYKIRVSED-G-ELFAVDEVNSNIVKITPPLSQ 107 (486)
Q Consensus 56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~d-G-~LYVaD~~n~rI~kid~~g~~ 107 (486)
..-++|..+..+.--. .-+||++++. . .|.|+-...---+.||+++..
T Consensus 53 ~~~eaGk~v~~~~lpa----R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~ 102 (366)
T COG3490 53 TLSEAGKIVFATALPA----RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQ 102 (366)
T ss_pred EEccCCceeeeeeccc----ccCCeecCCCCcceEEEEecCCceEEEECCCCCc
Confidence 4556676666554322 2477777763 2 266666655566777777543
No 190
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=35.80 E-value=6e+02 Score=27.53 Aligned_cols=22 Identities=5% Similarity=0.226 Sum_probs=14.9
Q ss_pred eEEEEeCCCCeEEEEECCCCce
Q 011435 203 SLLVIDRGNAALRQISLNQDDC 224 (486)
Q Consensus 203 ~LYVaD~gn~rIr~id~~G~~~ 224 (486)
.||+.|.....+++++..+..+
T Consensus 307 ~I~~~~~~g~~~~riT~~~~~~ 328 (425)
T COG0823 307 QIYLYDLEGSQVTRLTFSGGGN 328 (425)
T ss_pred ceEEECCCCCceeEeeccCCCC
Confidence 5777777777777777766433
No 191
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=35.63 E-value=42 Score=21.21 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=13.4
Q ss_pred CcceEEEcCCCCEEEEe
Q 011435 136 HPKGVTMDDKGNLYVAD 152 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD 152 (486)
.-..|+.|++|+|||+-
T Consensus 6 ~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp CEEEEEE-TTSCEEEEE
T ss_pred eEEEEEEcCCcCEEEEe
Confidence 34689999999999985
No 192
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.29 E-value=3.2e+02 Score=31.37 Aligned_cols=77 Identities=13% Similarity=0.211 Sum_probs=53.2
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
-+.+|.++.|.++|+-..+..|+.+|+.+.. +..-+.|. .| +-..|-+++||.=.++-...+
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~--kimkLrGH-------Td---------NVr~ll~~dDGt~~ls~sSDg 235 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK--KIMKLRGH-------TD---------NVRVLLVNDDGTRLLSASSDG 235 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEecccccc--ceeeeecc-------cc---------ceEEEEEcCCCCeEeecCCCc
Confidence 4788888899999988888888888886432 12222232 12 345788888998777777788
Q ss_pred EEEEEcCCC---ceEEcC
Q 011435 157 AIRKIGDAG---VTTIAG 171 (486)
Q Consensus 157 rIrkid~~G---v~tiaG 171 (486)
.|+..|.+. +.|+.-
T Consensus 236 tIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 236 TIRLWDLGQQRCLATYIV 253 (735)
T ss_pred eEEeeeccccceeeeEEe
Confidence 888888765 555543
No 193
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=35.23 E-value=3.7e+02 Score=28.46 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=50.4
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
...+.+++.|.++.+...|++|+.+|.++-. ..+++.+ ...--..|+++++|...++-+..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--iar~lsa----------------H~~pi~sl~WS~dgr~LltsS~D~ 87 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--IARMLSA----------------HVRPITSLCWSRDGRKLLTSSRDW 87 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc--hhhhhhc----------------cccceeEEEecCCCCEeeeecCCc
Confidence 4677888999999999999999999987432 1112111 222336899999999888888788
Q ss_pred EEEEEcC
Q 011435 157 AIRKIGD 163 (486)
Q Consensus 157 rIrkid~ 163 (486)
.|..+|.
T Consensus 88 si~lwDl 94 (405)
T KOG1273|consen 88 SIKLWDL 94 (405)
T ss_pred eeEEEec
Confidence 8888874
No 194
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=34.89 E-value=60 Score=25.15 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=21.9
Q ss_pred eeEEEccCCeEEEEECCC-------CEEEEEcCCCCc
Q 011435 78 YKIRVSEDGELFAVDEVN-------SNIVKITPPLSQ 107 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n-------~rI~kid~~g~~ 107 (486)
+++++.+||.|+++-... ..|.|+.++|+.
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsL 40 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSL 40 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCc
Confidence 678999999998876421 238888887653
No 195
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=34.65 E-value=1.1e+02 Score=34.08 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=74.2
Q ss_pred ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435 75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL 154 (486)
Q Consensus 75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 154 (486)
..|..-++++||.++.+-..++.|..++. ++.+.+....++.. +..| ..-+.|+++.+|++..+-..
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~A-----H~~g-------~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDK-GSRTVRPVMKVKDA-----HLPG-------QDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeec-CCcccccceEeeec-----cCCC-------CceeEEEeccccchhhhccC
Confidence 45777788899999888888888888886 33333444444421 1111 13468999999999988887
Q ss_pred CCEEEEEcCCC----ceEEcCCCC----CCCCcCCC-CccccccCCCceeEEEcCCCeEEEEeCCC-CeEEEEECCC
Q 011435 155 NLAIRKIGDAG----VTTIAGGKS----NVAGFRDG-PSEDAKFSNDFDVVYVRPTCSLLVIDRGN-AALRQISLNQ 221 (486)
Q Consensus 155 n~rIrkid~~G----v~tiaGg~~----g~~G~~DG-~~~~a~f~~P~gIa~vd~~G~LYVaD~gn-~rIr~id~~G 221 (486)
.+.+...|... +.+..|-.+ .-++|+.. -..-.--+.|++. ..|.|||-|+-. ..|.+|+..+
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~----~~g~L~f~d~~t~d~v~ki~i~~ 457 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM----TAGTLFFFDRMTLDTVYKIDIST 457 (641)
T ss_pred CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC----CCceEEEEeccceeeEEEecCCC
Confidence 78777777543 222222111 12333311 0000001224443 245788888754 4677777664
No 196
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=34.10 E-value=5.4e+02 Score=27.30 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=63.9
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcc-eEEEcC-CCCEEEEeCCC
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPK-GVTMDD-KGNLYVADTLN 155 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~-GIavD~-dG~LYVAD~~n 155 (486)
..|++++||..+++.+..+.|..+|.-. |+. +-.-+|+.|- +.-+.+ +-|..||-..+
T Consensus 69 ~sl~WS~dgr~LltsS~D~si~lwDl~~----------gs~----------l~rirf~spv~~~q~hp~k~n~~va~~~~ 128 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRDWSIKLWDLLK----------GSP----------LKRIRFDSPVWGAQWHPRKRNKCVATIME 128 (405)
T ss_pred eEEEecCCCCEeeeecCCceeEEEeccC----------CCc----------eeEEEccCccceeeeccccCCeEEEEEec
Confidence 6799999999999888888888888631 110 0122455563 444444 55666665443
Q ss_pred CEEEEEcCC-CceEEcCCCCCCCCcCCCCccccccC-CCceeEEEcCCCeEEEEeCCCCeEEEEECCCCce
Q 011435 156 LAIRKIGDA-GVTTIAGGKSNVAGFRDGPSEDAKFS-NDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDC 224 (486)
Q Consensus 156 ~rIrkid~~-Gv~tiaGg~~g~~G~~DG~~~~a~f~-~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~ 224 (486)
..-..++-. ++.++.... .|| .++ .+... +.+..|+..++-++.+.+..++.+...|
T Consensus 129 ~sp~vi~~s~~~h~~Lp~d------~d~-----dln~sas~~-~fdr~g~yIitGtsKGkllv~~a~t~e~ 187 (405)
T KOG1273|consen 129 ESPVVIDFSDPKHSVLPKD------DDG-----DLNSSASHG-VFDRRGKYIITGTSKGKLLVYDAETLEC 187 (405)
T ss_pred CCcEEEEecCCceeeccCC------Ccc-----ccccccccc-cccCCCCEEEEecCcceEEEEecchhee
Confidence 332223222 333222210 111 111 12222 3577787777777888888888776433
No 197
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=33.89 E-value=1.3e+02 Score=28.50 Aligned_cols=9 Identities=44% Similarity=0.423 Sum_probs=4.7
Q ss_pred CcchhHHHH
Q 011435 1 MKGTHLLLT 9 (486)
Q Consensus 1 Mkr~~~~ll 9 (486)
|+|.++.++
T Consensus 1 mkr~Lla~l 9 (176)
T COG4314 1 MKRTLLAIL 9 (176)
T ss_pred CchhHHHHH
Confidence 566555444
No 198
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=32.91 E-value=5.1e+02 Score=29.75 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=21.0
Q ss_pred eEEEccCCe-EEEEECCCCEEEEEcCCCCc
Q 011435 79 KIRVSEDGE-LFAVDEVNSNIVKITPPLSQ 107 (486)
Q Consensus 79 GlAVd~dG~-LYVaD~~n~rI~kid~~g~~ 107 (486)
+++.-+ |+ ++|+-.+.++|..+|..++.
T Consensus 105 Dl~wap-ge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 105 DLKWAP-GESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred eeccCC-CceeEEEccCCceeeeeeeccce
Confidence 344445 65 88888999999999987654
No 199
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=32.58 E-value=63 Score=31.36 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=16.9
Q ss_pred ccceeEEEc---cCCeEEEEECCCCEEEEEcCCC
Q 011435 75 VVPYKIRVS---EDGELFAVDEVNSNIVKITPPL 105 (486)
Q Consensus 75 ~~P~GlAVd---~dG~LYVaD~~n~rI~kid~~g 105 (486)
..|.-+-+. |+..++|+|. ..|+.++++.
T Consensus 64 krP~~frW~~~~P~~q~iVsdG--~~vw~Ydp~l 95 (204)
T TIGR00547 64 KRPNLFNMEMKQPDESIIISDG--KTLWFYDPFV 95 (204)
T ss_pred eCCCeEEEEEcCCCceEEEECC--CEEEEECCCC
Confidence 345554443 5566777763 4677777764
No 200
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.37 E-value=4e+02 Score=29.98 Aligned_cols=71 Identities=14% Similarity=0.113 Sum_probs=51.4
Q ss_pred ccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCC
Q 011435 75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTL 154 (486)
Q Consensus 75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~ 154 (486)
..+...+.+++.+.+|.-..++.|..+|.... ++..+- +.| .|+-|++.++|.++++-..
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----~t~~~k---------------a~~-~P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRG----VTLLAK---------------AEF-IPTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCC----eeeeee---------------ecc-cceEEEEcCCCcEEEEEcC
Confidence 35677788887777777777788888887532 233332 112 5999999999998887778
Q ss_pred CCEEEEEcCCC
Q 011435 155 NLAIRKIGDAG 165 (486)
Q Consensus 155 n~rIrkid~~G 165 (486)
.+.|+.||..-
T Consensus 320 qGelQ~FD~AL 330 (545)
T PF11768_consen 320 QGELQCFDMAL 330 (545)
T ss_pred CceEEEEEeec
Confidence 89999999543
No 201
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=32.29 E-value=3.7e+02 Score=26.63 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=39.0
Q ss_pred cceeEEEccCCe-EEEEE--CCCCEEEEEcCCCCcccccEEE-ecccCCccccCCCCccccccCCcceEEEcCCCCEEEE
Q 011435 76 VPYKIRVSEDGE-LFAVD--EVNSNIVKITPPLSQYSRGRLV-AGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVA 151 (486)
Q Consensus 76 ~P~GlAVd~dG~-LYVaD--~~n~rI~kid~~g~~~~~~~~v-aG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVA 151 (486)
.+..+|+.+||. +.++. .....++....++. ...+ .| ..|..| .+|++|.+|++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----~~~~~~g---------------~~l~~P---S~d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----VRPVLTG---------------GSLTRP---SWDPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----ceeeccC---------------Cccccc---cccCCCCEEEE
Confidence 578889999987 43333 34456777665432 1221 11 124444 78888899999
Q ss_pred eCCCCEEEEE
Q 011435 152 DTLNLAIRKI 161 (486)
Q Consensus 152 D~~n~rIrki 161 (486)
+......+.+
T Consensus 83 ~~~~~~~~~~ 92 (253)
T PF10647_consen 83 DDGSGGVRVV 92 (253)
T ss_pred EcCCCceEEE
Confidence 8876655555
No 202
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.00 E-value=5.9e+02 Score=26.34 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=22.3
Q ss_pred cceEEEcCCCCEEEEeCCCCEEEEEcC
Q 011435 137 PKGVTMDDKGNLYVADTLNLAIRKIGD 163 (486)
Q Consensus 137 P~GIavD~dG~LYVAD~~n~rIrkid~ 163 (486)
-.|+|+- ||..+|+=..+|||+.+-.
T Consensus 137 aEGLAvr-dG~~~VsfEr~hRI~iyp~ 162 (340)
T COG4246 137 AEGLAVR-DGDALVSFERDHRIWIYPV 162 (340)
T ss_pred cccceEe-cCceEEEeeccceeEEecc
Confidence 5799998 8999999888999998853
No 203
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.66 E-value=1.5e+02 Score=31.75 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=43.5
Q ss_pred eeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecc-cCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 78 YKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGS-FQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 78 ~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~-~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
..++.+++|+ ||++|.. +.+..||..+. .+.|. ..|..| .+.+|..++.+.+...-...
T Consensus 251 s~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~------kl~g~~~kg~tG------------sirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 251 SSTGLTPSGNFIYTGNTK-GQLAKFDLRGG------KLLGCGLKGITG------------SIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred eeeeecCCCcEEEEeccc-chhheecccCc------eeeccccCCccC------------CcceEEEcCCCceEEeeccc
Confidence 4567778888 8888864 57889997632 23332 233334 68899999876544443334
Q ss_pred CEEEEEcCCC
Q 011435 156 LAIRKIGDAG 165 (486)
Q Consensus 156 ~rIrkid~~G 165 (486)
.-||++|...
T Consensus 312 RyvRIhD~kt 321 (412)
T KOG3881|consen 312 RYVRIHDIKT 321 (412)
T ss_pred eeEEEeeccc
Confidence 4456666554
No 204
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=30.26 E-value=6.9e+02 Score=26.53 Aligned_cols=94 Identities=15% Similarity=0.226 Sum_probs=50.2
Q ss_pred EEccCCcEEEEEecCcccCccceeEEEccCCe-EEEEECCCC---------EEEEEcCCCCcccccEEEecccCCccccC
Q 011435 56 LQFENGYLVETVIEGNEIGVVPYKIRVSEDGE-LFAVDEVNS---------NIVKITPPLSQYSRGRLVAGSFQGYTGHV 125 (486)
Q Consensus 56 v~~~~G~~vetv~~G~~~~~~P~GlAVd~dG~-LYVaD~~n~---------rI~kid~~g~~~~~~~~vaG~~~G~~G~~ 125 (486)
++...+...-.+-.|.. | .+++++||+ +|++++.-. -|..+|..+-.. ...+.+= .+
T Consensus 22 iD~d~~k~lGmi~~g~~----~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-~~EI~iP--~k----- 88 (342)
T PF06433_consen 22 IDADSGKLLGMIDTGFL----G-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-TGEIEIP--PK----- 88 (342)
T ss_dssp EETTTTEEEEEEEEESS----E-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE-EEEEEET--TS-----
T ss_pred EECCCCcEEEEeecccC----C-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc-cceEecC--Cc-----
Confidence 55556655444444432 3 377889887 999886322 255666543210 0111110 00
Q ss_pred CCCccccccCCcceEEEcCCCC-EEEEeCC-CCEEEEEcCCC
Q 011435 126 DGKPNEARFNHPKGVTMDDKGN-LYVADTL-NLAIRKIGDAG 165 (486)
Q Consensus 126 dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~-n~rIrkid~~G 165 (486)
.....+..++-+++..||. +||.+.. ...|-++|...
T Consensus 89 ---~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~ 127 (342)
T PF06433_consen 89 ---PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA 127 (342)
T ss_dssp ----B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT
T ss_pred ---chheecccccceEEccCCcEEEEEccCCCCeEEEEECCC
Confidence 0112346788899998888 9999864 45677888766
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=30.22 E-value=6e+02 Score=27.29 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=45.6
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEc-C-CCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCC
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKIT-P-PLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid-~-~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n 155 (486)
..||++++|.+..+-+..+.|.|+- . +|.. ...+ .-|. ..-+-..|++++++.+..|-..+
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~k---l~eF----------RRG~----~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQK---LYEF----------RRGT----YPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccE---eeee----------eCCc----eeeEEEEEEECCCCCeEEEecCC
Confidence 7899999999999988888876653 2 2211 1000 0110 11123578999999987777777
Q ss_pred CEEEEEcCC
Q 011435 156 LAIRKIGDA 164 (486)
Q Consensus 156 ~rIrkid~~ 164 (486)
..|..|-.+
T Consensus 240 eTVHiFKL~ 248 (391)
T KOG2110|consen 240 ETVHIFKLE 248 (391)
T ss_pred CeEEEEEec
Confidence 887777543
No 206
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=30.13 E-value=7.8e+02 Score=27.15 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=44.5
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcC-CCC---cccccc--CCCceeEEEcCCCeEEEEeC
Q 011435 136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFR-DGP---SEDAKF--SNDFDVVYVRPTCSLLVIDR 209 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~-DG~---~~~a~f--~~P~gIa~vd~~G~LYVaD~ 209 (486)
.++.+++|+.+....+=+..+.|..++..+....--+.. ..++. ++. .....- +.-+.++ +.-||+|.++-.
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLa-is~DgtlLlSGd 296 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN-QKGRHEENTQINVLVGHENESAITCLA-ISTDGTLLLSGD 296 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCccccccc-ccccccccceeeeeccccCCcceeEEE-EecCccEEEeeC
Confidence 457899999877444445567888776433110000000 00000 000 000000 1234566 678888888888
Q ss_pred CCCeEEEEECCCC
Q 011435 210 GNAALRQISLNQD 222 (486)
Q Consensus 210 gn~rIr~id~~G~ 222 (486)
..+.|.+.+....
T Consensus 297 ~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 297 EDGKVCVWDIYSK 309 (476)
T ss_pred CCCCEEEEecchH
Confidence 7788887776654
No 207
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=29.74 E-value=6.4e+02 Score=26.02 Aligned_cols=68 Identities=16% Similarity=0.061 Sum_probs=40.7
Q ss_pred EEcCCCCEEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC-
Q 011435 141 TMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL- 219 (486)
Q Consensus 141 avD~dG~LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~- 219 (486)
.++.+|.+|+. ..++.|..+|+++...+.-... .+ ....++.|..+ .+|.|||.+... .+..++.
T Consensus 64 ~~~~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~------~~--~~~~~~~~~~~----~~G~i~~g~~~g-~~y~ld~~ 129 (370)
T COG1520 64 PADGDGTVYVG-TRDGNIFALNPDTGLVKWSYPL------LG--AVAQLSGPILG----SDGKIYVGSWDG-KLYALDAS 129 (370)
T ss_pred cEeeCCeEEEe-cCCCcEEEEeCCCCcEEecccC------cC--cceeccCceEE----eCCeEEEecccc-eEEEEECC
Confidence 46778999998 3456899999887332211000 00 11234444322 278888888765 7888888
Q ss_pred CCC
Q 011435 220 NQD 222 (486)
Q Consensus 220 ~G~ 222 (486)
+|+
T Consensus 130 ~G~ 132 (370)
T COG1520 130 TGT 132 (370)
T ss_pred CCc
Confidence 565
No 208
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=29.56 E-value=6.6e+02 Score=26.12 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=55.5
Q ss_pred cceEEEcCCC-CEEEEeCC-CCEEEEEcCCC--c-eEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCC
Q 011435 137 PKGVTMDDKG-NLYVADTL-NLAIRKIGDAG--V-TTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGN 211 (486)
Q Consensus 137 P~GIavD~dG-~LYVAD~~-n~rIrkid~~G--v-~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn 211 (486)
-+-+.+.|+. +.|++... ...|...|.++ + .++.|. .+| -+-++ +.+||.|-.+-...
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh----~~~------------v~t~~-vSpDGslcasGgkd 213 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH----SGY------------VNTVT-VSPDGSLCASGGKD 213 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc----ccc------------EEEEE-ECCCCCEEecCCCC
Confidence 3567888864 55555444 55677778887 2 444442 222 23455 78899998887777
Q ss_pred CeEEEEECCCCceeecccCCCCcceEEEEeeeeec---ceEeee
Q 011435 212 AALRQISLNQDDCEYQYNSISPTDILMVVGAVLVG---YVTCML 252 (486)
Q Consensus 212 ~rIr~id~~G~~~~~~~~~~~~~~i~t~~g~~~~G---y~l~l~ 252 (486)
+.+...+++...+.|--. -..++.+.+|+ |.+|..
T Consensus 214 g~~~LwdL~~~k~lysl~------a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 214 GEAMLWDLNEGKNLYSLE------AFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred ceEEEEEccCCceeEecc------CCCeEeeEEecCCceeEeec
Confidence 888888888654433211 11234444554 777764
No 209
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=28.83 E-value=2.7e+02 Score=31.15 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=47.3
Q ss_pred eeEEEccCCe-EEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCc-ceEEEcCCCCEEEEeCCC
Q 011435 78 YKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHP-KGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 78 ~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P-~GIavD~dG~LYVAD~~n 155 (486)
.||++.+..+ |+|+=....+|+.+|..... ..-++... +| ..+++.++|.+.+|-..+
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l~y~-------------------~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRLTYS-------------------HPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred CcceecCCccceEEEecccceEEEeeccccc-ccceeeec-------------------CCcceeeecCCceEEEeecCC
Confidence 5899998666 67766677789888864221 11111111 34 378999999999998889
Q ss_pred CEEEEEcCCC
Q 011435 156 LAIRKIGDAG 165 (486)
Q Consensus 156 ~rIrkid~~G 165 (486)
++|..+|..+
T Consensus 272 G~~i~YD~R~ 281 (673)
T KOG4378|consen 272 GELIAYDMRS 281 (673)
T ss_pred ceEEEEeccc
Confidence 9999998644
No 210
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=27.72 E-value=1.8e+02 Score=30.73 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=47.4
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEE
Q 011435 136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALR 215 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr 215 (486)
.-+++++.+||.-+++-.+...|+.++.+.+..-.-. + ...+..+..|+-+++.++-..+.|+-...+.|+
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr----~-----~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR----C-----IRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhh----H-----hhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4579999999998888888888888887652111000 0 011223457888886444445666666666677
Q ss_pred EEECC
Q 011435 216 QISLN 220 (486)
Q Consensus 216 ~id~~ 220 (486)
++-..
T Consensus 159 vyk~~ 163 (420)
T KOG2096|consen 159 VYKLV 163 (420)
T ss_pred EEEee
Confidence 66544
No 211
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=27.71 E-value=1e+02 Score=20.46 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.0
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEc
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKIT 102 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid 102 (486)
-.+|++.++++++++-..++.|..+|
T Consensus 14 i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 14 INSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEEecccccceeeCCCCEEEEEC
Confidence 58899999999888777777887654
No 212
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=27.64 E-value=5.3e+02 Score=26.54 Aligned_cols=69 Identities=20% Similarity=0.362 Sum_probs=45.5
Q ss_pred cceeEE---EccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEe
Q 011435 76 VPYKIR---VSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVAD 152 (486)
Q Consensus 76 ~P~GlA---Vd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD 152 (486)
-|..|. ..|+-++||+......++++|-+++. -+|.. ..| .+.--..+-+.|+|.+|.+-
T Consensus 223 ~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge------Ei~~~--nkg---------h~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 223 MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE------EIGSY--NKG---------HFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred CccccccccccCCCceEEecCcceEEEEEeccCCc------eeeec--ccC---------CCCceEEEEECCCCceeecc
Confidence 455554 34777899999888899999987532 11111 011 12223578899999999998
Q ss_pred CCCCEEEEE
Q 011435 153 TLNLAIRKI 161 (486)
Q Consensus 153 ~~n~rIrki 161 (486)
+..+.||..
T Consensus 286 SEDGTirlW 294 (334)
T KOG0278|consen 286 SEDGTIRLW 294 (334)
T ss_pred CCCceEEEE
Confidence 777766654
No 213
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=27.11 E-value=85 Score=32.51 Aligned_cols=108 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred CeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCEEEEEcCCC
Q 011435 86 GELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 86 G~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~rIrkid~~G 165 (486)
+.+||.|..++.+..+............--.. .-|++-.++|||+.+...+..+++..+|
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g--------------------~~~~~v~~~nly~~~~~~~~~~~lT~dg 82 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDG--------------------KYIAFVRDNNLYLRDLATGQETQLTTDG 82 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSS--------------------TEEEEEETTEEEEESSTTSEEEESES--
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCC--------------------CeeEEEecCceEEEECCCCCeEEecccc
Q ss_pred ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEEC
Q 011435 166 VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISL 219 (486)
Q Consensus 166 v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~ 219 (486)
...-..|..|-...+..|....++...+++..|.+.-.....|..+..
T Consensus 83 ------~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 83 ------EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp ------TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ------ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
No 214
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=26.72 E-value=1.7e+02 Score=32.16 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=33.1
Q ss_pred ceeEEEccCCe-EEEEECCCCEEEEEcCCCCccc--ccEEEecccCCcc--ccCCCCccccccCCcceEEEcCCCC-EEE
Q 011435 77 PYKIRVSEDGE-LFAVDEVNSNIVKITPPLSQYS--RGRLVAGSFQGYT--GHVDGKPNEARFNHPKGVTMDDKGN-LYV 150 (486)
Q Consensus 77 P~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~~--~~~~vaG~~~G~~--G~~dG~~~~a~Ln~P~GIavD~dG~-LYV 150 (486)
+.+|.++-|.. |||+.+..+.|+.+|..--..- ...+.+|...... -...| ...-..|.=|-++-||. |||
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g---~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKG---KRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS---------S----EEE-TTSSEEEE
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccc---cccCCCCCeEEEccCCeEEEE
Confidence 57788877766 9999999999999986422100 0122333210000 00001 11123688899999998 999
Q ss_pred EeCC
Q 011435 151 ADTL 154 (486)
Q Consensus 151 AD~~ 154 (486)
+.+.
T Consensus 391 TnSL 394 (461)
T PF05694_consen 391 TNSL 394 (461)
T ss_dssp E---
T ss_pred Eeec
Confidence 9863
No 215
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=26.47 E-value=1.3e+02 Score=30.02 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=10.9
Q ss_pred EEEccCCcEEEEEecCc
Q 011435 55 VLQFENGYLVETVIEGN 71 (486)
Q Consensus 55 vv~~~~G~~vetv~~G~ 71 (486)
.+.++.|..+..+.-|.
T Consensus 52 ~I~f~~gE~I~~v~~GD 68 (243)
T TIGR02781 52 TIEFADDETIKTVAVGD 68 (243)
T ss_pred EEEeCCCCEEEEecccC
Confidence 36677777776666554
No 216
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=25.84 E-value=5e+02 Score=29.61 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=20.2
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCC
Q 011435 136 HPKGVTMDDKGNLYVADTLNLAIRKIGDA 164 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~ 164 (486)
.-+++..|.+|+|||.+. ++|.++...
T Consensus 291 ~vnsL~~D~dGsLWv~t~--~giv~~~~a 317 (671)
T COG3292 291 TVNSLWLDTDGSLWVGTY--GGIVRYLTA 317 (671)
T ss_pred cccceeeccCCCEeeecc--CceEEEecc
Confidence 346889999999999984 556666544
No 217
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=25.83 E-value=3.9e+02 Score=28.84 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=39.1
Q ss_pred EEccCCcEEEEEecCcccC--ccceeEEEccCCe--EEEEECCC-CEEEEEcCCCCcccccEEEecccCCccccCCCCcc
Q 011435 56 LQFENGYLVETVIEGNEIG--VVPYKIRVSEDGE--LFAVDEVN-SNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPN 130 (486)
Q Consensus 56 v~~~~G~~vetv~~G~~~~--~~P~GlAVd~dG~--LYVaD~~n-~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~ 130 (486)
.+...|..|..+....... ...+-=++..||+ ||.+|..+ .+++.+|.++.. .+-+... .|
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~---i~QLTdg----~g------- 80 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE---ITQLTDG----PG------- 80 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E---EEE---S----S--------
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE---EEECccC----CC-------
Confidence 4566676666666533211 2233445677886 56667543 458888887532 2222211 01
Q ss_pred ccccCCcceEEEcCCCC-E-EEEeCCCCEEEEEcCCC
Q 011435 131 EARFNHPKGVTMDDKGN-L-YVADTLNLAIRKIGDAG 165 (486)
Q Consensus 131 ~a~Ln~P~GIavD~dG~-L-YVAD~~n~rIrkid~~G 165 (486)
.+ -.|..+.++.+ | ||-+ +..|+++|.++
T Consensus 81 ---~~-~~g~~~s~~~~~~~Yv~~--~~~l~~vdL~T 111 (386)
T PF14583_consen 81 ---DN-TFGGFLSPDDRALYYVKN--GRSLRRVDLDT 111 (386)
T ss_dssp ---B--TTT-EE-TTSSEEEEEET--TTEEEEEETTT
T ss_pred ---CC-ccceEEecCCCeEEEEEC--CCeEEEEECCc
Confidence 11 12455556555 5 5543 46899999877
No 218
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=25.58 E-value=3.2e+02 Score=23.74 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=35.3
Q ss_pred ceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 77 PYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 77 P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
.+-+.+..||+|.+.|..+ ++ ....... .|. -..+.-+.+..+|+|.+-|..+.
T Consensus 20 ~~~L~l~~dGnLvl~~~~~-~~-iWss~~t--------~~~----------------~~~~~~~~L~~~GNlvl~d~~~~ 73 (114)
T PF01453_consen 20 NYTLILQSDGNLVLYDSNG-SV-IWSSNNT--------SGR----------------GNSGCYLVLQDDGNLVLYDSSGN 73 (114)
T ss_dssp TEEEEEETTSEEEEEETTT-EE-EEE--S---------TTS----------------S-SSEEEEEETTSEEEEEETTSE
T ss_pred cccceECCCCeEEEEcCCC-CE-EEEeccc--------CCc----------------cccCeEEEEeCCCCEEEEeecce
Confidence 4667888899999998763 44 2222100 010 00356778888999999996544
Q ss_pred EEEE
Q 011435 157 AIRK 160 (486)
Q Consensus 157 rIrk 160 (486)
.|+.
T Consensus 74 ~lW~ 77 (114)
T PF01453_consen 74 VLWQ 77 (114)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 219
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=25.53 E-value=9.7e+02 Score=26.71 Aligned_cols=32 Identities=16% Similarity=0.499 Sum_probs=22.5
Q ss_pred EEeeeeec---ceEeeeccCCcceEEeecCCCCCCCC
Q 011435 239 VVGAVLVG---YVTCMLQQGFGPFFFSRTQQPSESEF 272 (486)
Q Consensus 239 ~~g~~~~G---y~l~l~~~~~g~~~~a~~~~~~~~~~ 272 (486)
+-++-++| |.+.+ +...|+|+-++..|.....
T Consensus 328 IysvRF~Gd~~Y~VTF--rqvDPLfviDLsdP~~P~v 362 (521)
T PF09826_consen 328 IYSVRFMGDRAYLVTF--RQVDPLFVIDLSDPANPKV 362 (521)
T ss_pred EEEEEEeCCeEEEEEE--eecCceEEEECCCCCCCce
Confidence 44445555 77777 6788999999988776443
No 220
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=25.43 E-value=8e+02 Score=25.73 Aligned_cols=110 Identities=10% Similarity=0.074 Sum_probs=65.1
Q ss_pred eeEEEcc-CCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCC
Q 011435 78 YKIRVSE-DGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNL 156 (486)
Q Consensus 78 ~GlAVd~-dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~ 156 (486)
.+|.+.| +++.||+-.-...-...|.... .-+.++.|. +. .-+.|.+-|+|.-+++-..+.
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~gh--------es--------DINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGH--------ES--------DINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCc--ceeEeeccc--------cc--------ccceEEEccCCCeeeecCCCc
Confidence 4566666 7778887655544444554311 112222222 11 235788889999899988888
Q ss_pred EEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECC
Q 011435 157 AIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLN 220 (486)
Q Consensus 157 rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~ 220 (486)
..|.||... +..+... .....-+.++ ...+|+|.++-..+..+.+.|.-
T Consensus 252 tcRlyDlRaD~~~a~ys~~--------------~~~~gitSv~-FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYSHD--------------SIICGITSVA-FSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred eeEEEeecCCcEEeeeccC--------------cccCCceeEE-EcccccEEEeeecCCceeEeecc
Confidence 889898544 4444321 0011224566 57788888887777677766643
No 221
>smart00284 OLF Olfactomedin-like domains.
Probab=25.12 E-value=3.4e+02 Score=27.53 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=20.7
Q ss_pred eEEEcCCCCEEEEeCCCCEEEEEcCCC
Q 011435 139 GVTMDDKGNLYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 139 GIavD~dG~LYVAD~~n~rIrkid~~G 165 (486)
|-+|= +|.||.--.....|.|+|...
T Consensus 78 G~VVY-ngslYY~~~~s~~iiKydL~t 103 (255)
T smart00284 78 GVVVY-NGSLYFNKFNSHDICRFDLTT 103 (255)
T ss_pred cEEEE-CceEEEEecCCccEEEEECCC
Confidence 44444 589999888888999999876
No 222
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.00 E-value=9.8e+02 Score=26.56 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=10.9
Q ss_pred ceEEEcCCCCEEEEeCCC
Q 011435 138 KGVTMDDKGNLYVADTLN 155 (486)
Q Consensus 138 ~GIavD~dG~LYVAD~~n 155 (486)
.++++|++..|+++-..+
T Consensus 390 ~~~A~Dp~~g~~yvp~~~ 407 (527)
T TIGR03075 390 QPMAYSPKTGLFYVPANE 407 (527)
T ss_pred CCceECCCCCEEEEeccc
Confidence 468899866644444443
No 223
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=24.92 E-value=1.2e+02 Score=20.97 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=16.9
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCC
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPP 104 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~ 104 (486)
.+++++ +|.|||.+. +++|+.+|.+
T Consensus 15 ~~~~v~-~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 15 SSPAVA-GGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp S--EEC-TSEEEEE-T-TSEEEEEETT
T ss_pred cCCEEE-CCEEEEEcC-CCEEEEEeCC
Confidence 344664 678999986 6789999864
No 224
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=24.80 E-value=7.9e+02 Score=26.57 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=67.5
Q ss_pred eeEEEccCCe-EEEEECCCCEEEEEcCCCCcc--------cccEEEecccC--CccccCCCCccccccCCcceEEEcCCC
Q 011435 78 YKIRVSEDGE-LFAVDEVNSNIVKITPPLSQY--------SRGRLVAGSFQ--GYTGHVDGKPNEARFNHPKGVTMDDKG 146 (486)
Q Consensus 78 ~GlAVd~dG~-LYVaD~~n~rI~kid~~g~~~--------~~~~~vaG~~~--G~~G~~dG~~~~a~Ln~P~GIavD~dG 146 (486)
.+-.++++|. |+++-++..+|+.+..++.-- .....++.-.. -..| ..-.=..+.-||.|+.|
T Consensus 284 qtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag------~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 284 QTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG------QRLCCGEAQCLAWDPSG 357 (445)
T ss_pred eeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC------cccccCccceeeECCCC
Confidence 4556789987 788888888999987664310 01111221100 0000 00001146789999999
Q ss_pred C-EEEEeCCCCE-------EEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEE--EcCCCeEEEEeCCCCe
Q 011435 147 N-LYVADTLNLA-------IRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVY--VRPTCSLLVIDRGNAA 213 (486)
Q Consensus 147 ~-LYVAD~~n~r-------Irkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~--vd~~G~LYVaD~gn~r 213 (486)
+ |-|.=.+..+ |.++|..- +.... +|...|. .|.-|.+ .+.+|.|......+++
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~------cg~i~ge-------~P~~IsF~pl~n~g~lLsiaWsTGr 424 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSY------CGMIGGE-------YPAYISFGPLKNEGRLLSIAWSTGR 424 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEe------cccccCC-------CCceEEeeecccCCcEEEEEeccCc
Confidence 7 5554444443 33444322 11111 1121121 1444433 3577889999999999
Q ss_pred EEEEECCC
Q 011435 214 LRQISLNQ 221 (486)
Q Consensus 214 Ir~id~~G 221 (486)
|.++.+.-
T Consensus 425 iq~ypl~f 432 (445)
T KOG2139|consen 425 IQRYPLTF 432 (445)
T ss_pred eEeeeeEE
Confidence 99998764
No 225
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=24.15 E-value=2.4e+02 Score=27.34 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=7.8
Q ss_pred EEccCCeEEEEECCC
Q 011435 81 RVSEDGELFAVDEVN 95 (486)
Q Consensus 81 AVd~dG~LYVaD~~n 95 (486)
.+|.++.+|.-....
T Consensus 49 ~~~~~~~~~~~~~~~ 63 (216)
T PF11153_consen 49 FVDGDGDWYRFPTGD 63 (216)
T ss_pred EEeCCCcEEEEeccc
Confidence 455666665544433
No 226
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=24.06 E-value=6.2e+02 Score=27.49 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=24.2
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCCC
Q 011435 136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~G 165 (486)
.+..+++.++++..++-...+.++.+|...
T Consensus 125 diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred chhhhhccCCCceeeeeeccceEEEEEecc
Confidence 578899999999888888888888887543
No 227
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=23.12 E-value=3.5e+02 Score=28.55 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.6
Q ss_pred cceEEEcCCCCEEEEeCCCCEEEEEc
Q 011435 137 PKGVTMDDKGNLYVADTLNLAIRKIG 162 (486)
Q Consensus 137 P~GIavD~dG~LYVAD~~n~rIrkid 162 (486)
-+.+-..+.|+|||+-...+.|..+|
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeec
Confidence 35677889999999999999999887
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=22.77 E-value=7.3e+02 Score=28.26 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=69.3
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcC--CCCEEEEeCCC
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDD--KGNLYVADTLN 155 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~--dG~LYVAD~~n 155 (486)
+.|++..||.++++.+..-||.+.|+-.. +....+.+ |+ ..+-..+-+-| +..|.++-.+.
T Consensus 54 N~LeWn~dG~lL~SGSDD~r~ivWd~~~~---KllhsI~T-----gH---------taNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 54 NCLEWNADGELLASGSDDTRLIVWDPFEY---KLLHSIST-----GH---------TANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred cceeecCCCCEEeecCCcceEEeecchhc---ceeeeeec-----cc---------ccceeEEeeeccCCCeEEEeccCc
Confidence 67899999999999999999999998522 22333322 11 11112222223 33477777777
Q ss_pred CEEEEEcCCCceEEcCCCCCCCCcCCCCccc-----cccCCCceeEEEcCCC-eEEEEeCCCCeEEEEECCC
Q 011435 156 LAIRKIGDAGVTTIAGGKSNVAGFRDGPSED-----AKFSNDFDVVYVRPTC-SLLVIDRGNAALRQISLNQ 221 (486)
Q Consensus 156 ~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~-----a~f~~P~gIa~vd~~G-~LYVaD~gn~rIr~id~~G 221 (486)
.-|+.+|.+..+ ++ |-.+|.... -.+.+-..|| ..+++ +.+.+....+.||.+|...
T Consensus 117 k~i~lfdl~~~~---~~-----~~d~~~~~~~~~~~cht~rVKria-~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 117 KLIKLFDLDSSK---EG-----GMDHGMEETTRCWSCHTDRVKRIA-TAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ceEEEEeccccc---cc-----ccccCccchhhhhhhhhhhhhhee-cCCCCCceEEEecCCcceeeecccC
Confidence 788888765311 11 001111000 1123334566 56666 7888888889999999875
No 229
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.54 E-value=5.2e+02 Score=27.82 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=49.9
Q ss_pred CcceEEEcCCCCEEEEeCCCCEEEEEcCCCceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEE
Q 011435 136 HPKGVTMDDKGNLYVADTLNLAIRKIGDAGVTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALR 215 (486)
Q Consensus 136 ~P~GIavD~dG~LYVAD~~n~rIrkid~~Gv~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr 215 (486)
.+++|++.|++..||+-...+.++-+|.--+.+-.+- |-| ..+.-.++. ..+.|.=+|+-+....||
T Consensus 231 RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v------~~d------hvsAV~dVd-fsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 231 RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV------HKD------HVSAVMDVD-FSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred cccceecCccccceeeccccccceehhhhhhcccchh------hcc------cceeEEEec-cCCCcchhccccccceEE
Confidence 5899999998888888777888888885442211110 000 011123555 467888889999999999
Q ss_pred EEECCCC
Q 011435 216 QISLNQD 222 (486)
Q Consensus 216 ~id~~G~ 222 (486)
.|..+..
T Consensus 298 If~~~~~ 304 (433)
T KOG0268|consen 298 IFPVNHG 304 (433)
T ss_pred EeecCCC
Confidence 9988753
No 230
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=22.48 E-value=6.8e+02 Score=26.65 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=20.2
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITP 103 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~ 103 (486)
.-..|++.+||+-+++-. ++.|.+++.
T Consensus 160 aAhsL~Fs~DGeqlfaGy-krcirvFdt 186 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGY-KRCIRVFDT 186 (406)
T ss_pred hheeEEecCCCCeEeecc-cceEEEeec
Confidence 457899999999555543 557888876
No 231
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.47 E-value=7.1e+02 Score=29.08 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=47.6
Q ss_pred cceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCc-ceEEEcCCCCEEEEeCC
Q 011435 76 VPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHP-KGVTMDDKGNLYVADTL 154 (486)
Q Consensus 76 ~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P-~GIavD~dG~LYVAD~~ 154 (486)
.=..+++++|++++++=..+..+..++.+.+..-+.-...+. .| ..+++|+.|.|.-+=..
T Consensus 64 ~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He------------------~Pvi~ma~~~~g~LlAtgga 125 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHE------------------APVITMAFDPTGTLLATGGA 125 (775)
T ss_pred hhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccC------------------CCeEEEEEcCCCceEEeccc
Confidence 346788999988766666666666677654321111011111 34 48899998865555445
Q ss_pred CCEEEEEcCCC---ceEEcC
Q 011435 155 NLAIRKIGDAG---VTTIAG 171 (486)
Q Consensus 155 n~rIrkid~~G---v~tiaG 171 (486)
.++|++.|-.+ ...+.|
T Consensus 126 D~~v~VWdi~~~~~th~fkG 145 (775)
T KOG0319|consen 126 DGRVKVWDIKNGYCTHSFKG 145 (775)
T ss_pred cceEEEEEeeCCEEEEEecC
Confidence 68888888665 455655
No 232
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=22.24 E-value=7.5e+02 Score=26.81 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=17.5
Q ss_pred EEcCCCC--EEEEeCC-CCEEEEEcCCC
Q 011435 141 TMDDKGN--LYVADTL-NLAIRKIGDAG 165 (486)
Q Consensus 141 avD~dG~--LYVAD~~-n~rIrkid~~G 165 (486)
.+.+||. +|++|.. .-.|.+++.+|
T Consensus 288 s~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 288 SWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred cCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 3456887 6777765 34688889888
No 233
>PRK10626 hypothetical protein; Provisional
Probab=22.21 E-value=2.6e+02 Score=28.15 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=7.7
Q ss_pred EEEccCCeEEE
Q 011435 80 IRVSEDGELFA 90 (486)
Q Consensus 80 lAVd~dG~LYV 90 (486)
+.+++||+|||
T Consensus 48 l~I~~dg~L~i 58 (239)
T PRK10626 48 LVISPDGNVMR 58 (239)
T ss_pred eEEcCCCCEEE
Confidence 56677777776
No 234
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=21.97 E-value=1.1e+03 Score=27.74 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=50.6
Q ss_pred ccCCc-ceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEe
Q 011435 133 RFNHP-KGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVID 208 (486)
Q Consensus 133 ~Ln~P-~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD 208 (486)
+|+.| .+|.+.+|+++|-.-...+.|..+.... ..+|-|-....+.+.- ..-..+.++. +|+.-+..|-+
T Consensus 290 RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~-----~~~~l~t~~~-idpr~~~~vln 363 (792)
T KOG1963|consen 290 RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKT-----RPQSLTTGVS-IDPRTNSLVLN 363 (792)
T ss_pred ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccc-----cccccceeEE-EcCCCCceeec
Confidence 46666 5999999999888877789999887643 3455443221111100 0112245565 56655556666
Q ss_pred CCCCeEEEEECCCC
Q 011435 209 RGNAALRQISLNQD 222 (486)
Q Consensus 209 ~gn~rIr~id~~G~ 222 (486)
..+++|+.+++-.+
T Consensus 364 ~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 364 GHPGHVQFYDLYTD 377 (792)
T ss_pred CCCceEEEEecccc
Confidence 67777777776543
No 235
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.94 E-value=1.3e+03 Score=27.89 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=50.2
Q ss_pred CcEEEEEecCcccCccceeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceE
Q 011435 61 GYLVETVIEGNEIGVVPYKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGV 140 (486)
Q Consensus 61 G~~vetv~~G~~~~~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GI 140 (486)
+-++.-+.+|...+ -+-+|+-+---|+|+-.....|-....+....+.+.+.-| .+|+-.++
T Consensus 195 DaVVK~VLEGHDRG--VNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrg----------------H~nnVssv 256 (1202)
T KOG0292|consen 195 DAVVKHVLEGHDRG--VNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRG----------------HYNNVSSV 256 (1202)
T ss_pred Ceeeeeeecccccc--cceEEecCCcceEEecCCcceeeEEEeccccceeehhhhc----------------ccCCcceE
Confidence 34566666665544 2334554544566665544333222222111122222222 36677899
Q ss_pred EEcCCCCEEEEeCCCCEEEEEcCCC
Q 011435 141 TMDDKGNLYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 141 avD~dG~LYVAD~~n~rIrkid~~G 165 (486)
-+++.-+|+++......||+.|.+-
T Consensus 257 lfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 257 LFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred EecCccceeEecCCCccEEEEeccc
Confidence 9999889999999888899888654
No 236
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=21.72 E-value=9.5e+02 Score=25.25 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=48.0
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA 157 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r 157 (486)
+-+.++|+|.++++-...+.|+-....+.. ...-+.-| ..| .-.++....||+..++-....+
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN~~~lkg----Hsg------------AVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDC-ENFWVLKG----HSG------------AVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEeccccc-cceeeecc----ccc------------eeEeeeeccCCCEEEEecCCce
Confidence 556788999999998888888877654321 00111111 122 3467888889998888777889
Q ss_pred EEEEcCCC
Q 011435 158 IRKIGDAG 165 (486)
Q Consensus 158 Irkid~~G 165 (486)
|+.+|...
T Consensus 114 v~~wD~~t 121 (338)
T KOG0265|consen 114 VRGWDAET 121 (338)
T ss_pred EEEEeccc
Confidence 99998654
No 237
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=21.37 E-value=9.2e+02 Score=24.96 Aligned_cols=113 Identities=18% Similarity=0.186 Sum_probs=68.4
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCCEEEEeCCCCE
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGNLYVADTLNLA 157 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~LYVAD~~n~r 157 (486)
.-++..|+|+-.++-...++|..||... .+.+.. ......-+-|+..-++++||...++++
T Consensus 110 i~i~wsp~g~~~~~~~kdD~it~id~r~-----~~~~~~--------------~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 110 INITWSPDGEYIAVGNKDDRITFIDART-----YKIVNE--------------EQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eEEEEcCCCCEEEEecCcccEEEEEecc-----cceeeh--------------hcccceeeeeeecCCCCEEEEecCCce
Confidence 4456667776555444555677676532 111111 111223457888878889999999999
Q ss_pred EEEEcCCC---ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCeEEEEECCCCceee
Q 011435 158 IRKIGDAG---VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLNQDDCEY 226 (486)
Q Consensus 158 Irkid~~G---v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~rIr~id~~G~~~~~ 226 (486)
|.++.--. +.+|--- =..-..|. .+++|+-+-+-.....+...|++...|..
T Consensus 171 v~ILsypsLkpv~si~AH----------------~snCicI~-f~p~GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAH----------------PSNCICIE-FDPDGRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred EEEEeccccccccccccC----------------CcceEEEE-ECCCCceEeeccccceeeccChhHhhhhe
Confidence 98886333 3443211 11223454 68888777777777778888888776665
No 238
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=21.03 E-value=4.1e+02 Score=26.66 Aligned_cols=29 Identities=7% Similarity=-0.032 Sum_probs=17.4
Q ss_pred ccceeEEEccCCeEEEEECCCCEEEEEcCCC
Q 011435 75 VVPYKIRVSEDGELFAVDEVNSNIVKITPPL 105 (486)
Q Consensus 75 ~~P~GlAVd~dG~LYVaD~~n~rI~kid~~g 105 (486)
.+|.++|++.+|.+-|.+ .++.. .++.+|
T Consensus 90 g~~lD~AI~G~GfF~V~~-~~G~~-~yTR~G 118 (260)
T PRK12694 90 GNSKDVAINGQGFFQVLM-PDGTT-AYTRDG 118 (260)
T ss_pred CCcceEEEcCCcEEEEEc-CCCCe-EEeeCC
Confidence 479999998877654543 33422 144443
No 239
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=20.95 E-value=1.1e+03 Score=25.49 Aligned_cols=70 Identities=10% Similarity=0.194 Sum_probs=47.4
Q ss_pred ceEEEcCCCCEEEEeCCCCEEE-EEc-CCC--ceEEcCCCCCCCCcCCCCccccccCCCceeEEEcCCCeEEEEeCCCCe
Q 011435 138 KGVTMDDKGNLYVADTLNLAIR-KIG-DAG--VTTIAGGKSNVAGFRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAA 213 (486)
Q Consensus 138 ~GIavD~dG~LYVAD~~n~rIr-kid-~~G--v~tiaGg~~g~~G~~DG~~~~a~f~~P~gIa~vd~~G~LYVaD~gn~r 213 (486)
..||++++|.+..+-...+.|. +|. ++| +..+--|. ...+-..|+ .+++..+..+-..+..
T Consensus 177 Aalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--------------~~~~IySL~-Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 177 AALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--------------YPVSIYSLS-FSPDSQFLAASSNTET 241 (391)
T ss_pred eEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc--------------eeeEEEEEE-ECCCCCeEEEecCCCe
Confidence 4899999999888877777755 444 555 44443221 111224566 5778888888888899
Q ss_pred EEEEECCCC
Q 011435 214 LRQISLNQD 222 (486)
Q Consensus 214 Ir~id~~G~ 222 (486)
|..|.++..
T Consensus 242 VHiFKL~~~ 250 (391)
T KOG2110|consen 242 VHIFKLEKV 250 (391)
T ss_pred EEEEEeccc
Confidence 988888754
No 240
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=20.90 E-value=1e+03 Score=25.32 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=42.2
Q ss_pred cceEEEcCCCCEEEEeCCCCEEEEEcCCC---ceEEcCCCCCCCCcCCCCcccc--ccCCCceeEEEcCCCeEEEEeCCC
Q 011435 137 PKGVTMDDKGNLYVADTLNLAIRKIGDAG---VTTIAGGKSNVAGFRDGPSEDA--KFSNDFDVVYVRPTCSLLVIDRGN 211 (486)
Q Consensus 137 P~GIavD~dG~LYVAD~~n~rIrkid~~G---v~tiaGg~~g~~G~~DG~~~~a--~f~~P~gIa~vd~~G~LYVaD~gn 211 (486)
-+...+.++|+-.++-...+.|.+.+... +.|+-..++ |-+.... -=.+|..+++......|||.+-..
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~------d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT------DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC------cccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 35677888898666666677787776443 455433211 1100000 001244454456666777777766
Q ss_pred CeEEEEEC
Q 011435 212 AALRQISL 219 (486)
Q Consensus 212 ~rIr~id~ 219 (486)
+-|+-|+.
T Consensus 425 QvVrsfsS 432 (508)
T KOG0275|consen 425 QVVRSFSS 432 (508)
T ss_pred eEEeeecc
Confidence 66666654
No 241
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=20.31 E-value=1.8e+02 Score=32.53 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=48.9
Q ss_pred eeEEEccCCeEEEEECCCCEEEEEcCCCCcccccEEEecccCCccccCCCCccccccCCcceEEEcCCCC-EEEEeCCCC
Q 011435 78 YKIRVSEDGELFAVDEVNSNIVKITPPLSQYSRGRLVAGSFQGYTGHVDGKPNEARFNHPKGVTMDDKGN-LYVADTLNL 156 (486)
Q Consensus 78 ~GlAVd~dG~LYVaD~~n~rI~kid~~g~~~~~~~~vaG~~~G~~G~~dG~~~~a~Ln~P~GIavD~dG~-LYVAD~~n~ 156 (486)
+.||+++|-+|.|+-...+.|.++|.. -.++++.+ .|+.|| -.-|.+..+|. ||-- .-.+
T Consensus 513 yALa~spDakvcFsccsdGnI~vwDLh------nq~~Vrqf---qGhtDG---------ascIdis~dGtklWTG-GlDn 573 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDGNIAVWDLH------NQTLVRQF---QGHTDG---------ASCIDISKDGTKLWTG-GLDN 573 (705)
T ss_pred hhhhcCCccceeeeeccCCcEEEEEcc------cceeeecc---cCCCCC---------ceeEEecCCCceeecC-CCcc
Confidence 467888999999988888999999975 23445543 344555 35788888887 6544 4467
Q ss_pred EEEEEcCCC
Q 011435 157 AIRKIGDAG 165 (486)
Q Consensus 157 rIrkid~~G 165 (486)
.||..|...
T Consensus 574 tvRcWDlre 582 (705)
T KOG0639|consen 574 TVRCWDLRE 582 (705)
T ss_pred ceeehhhhh
Confidence 889888644
No 242
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=20.02 E-value=2.8e+02 Score=28.93 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=19.7
Q ss_pred CCcceEEEcCCCC---EEEEeCCCCEEEEEcCCC
Q 011435 135 NHPKGVTMDDKGN---LYVADTLNLAIRKIGDAG 165 (486)
Q Consensus 135 n~P~GIavD~dG~---LYVAD~~n~rIrkid~~G 165 (486)
..|..+..|.||. +|+.|.. +.|+|||..+
T Consensus 208 ~~~~~~D~d~DG~~D~vYaGDl~-GnlwR~dl~~ 240 (335)
T PF05567_consen 208 SSPAVVDSDGDGYVDRVYAGDLG-GNLWRFDLSS 240 (335)
T ss_dssp EEEEEE-TTSSSEE-EEEEEETT-SEEEEEE--T
T ss_pred cccEEEeccCCCeEEEEEEEcCC-CcEEEEECCC
Confidence 3455555566664 8999985 8899999754
Done!