Query 011436
Match_columns 485
No_of_seqs 490 out of 3544
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 08:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2n_A Peptidylprolyl isomeras 100.0 2.3E-49 8E-54 352.8 20.4 174 308-483 2-176 (176)
2 2fu0_A Cyclophilin, putative; 100.0 9E-49 3.1E-53 344.3 19.3 158 327-484 3-160 (160)
3 2x7k_A Peptidyl-prolyl CIS-tra 100.0 5.4E-48 1.8E-52 341.5 20.5 156 328-483 10-165 (166)
4 2ok3_A Peptidyl-prolyl CIS-tra 100.0 6.2E-48 2.1E-52 340.1 19.2 155 330-484 1-156 (161)
5 1zkc_A Peptidyl-prolyl CIS-tra 100.0 2.3E-47 7.8E-52 344.4 20.8 160 325-484 15-175 (197)
6 2b71_A Cyclophilin-like protei 100.0 2.3E-47 7.8E-52 344.6 19.7 157 328-484 37-193 (196)
7 2poe_A Cyclophilin-like protei 100.0 3.4E-47 1.2E-51 341.6 19.8 158 327-484 14-175 (185)
8 2k7n_A Peptidyl-prolyl CIS-tra 100.0 4.7E-47 1.6E-51 343.5 19.2 158 328-485 10-167 (203)
9 3bo7_A Peptidyl-prolyl CIS-tra 100.0 1.2E-46 4.2E-51 343.2 19.0 158 327-484 4-173 (201)
10 1w74_A Peptidyl-prolyl CIS-tra 100.0 5.1E-46 1.8E-50 334.8 19.5 155 326-483 20-191 (191)
11 2hq6_A Serologically defined c 100.0 2.3E-45 7.7E-50 329.4 18.6 158 326-484 21-180 (185)
12 1mzw_A Cyclophilin H, U-snRNP- 100.0 2.9E-45 9.8E-50 327.5 19.0 155 328-483 9-177 (177)
13 2wfi_A Peptidyl-prolyl CIS-tra 100.0 2.4E-45 8.1E-50 328.6 17.9 150 333-483 18-179 (179)
14 2cmt_A Peptidyl-prolyl CIS-tra 100.0 6.8E-45 2.3E-49 323.2 20.1 154 329-484 10-172 (172)
15 2he9_A NK-tumor recognition pr 100.0 3E-45 1E-49 330.5 17.9 152 332-484 27-190 (192)
16 1a58_A Cyclophilin; isomerase, 100.0 4.4E-45 1.5E-49 326.7 18.0 149 335-484 17-177 (177)
17 2haq_A Cyclophilin; rotamase, 100.0 2.7E-45 9.1E-50 325.0 15.8 151 331-483 18-172 (172)
18 1z81_A Cyclophilin; structural 100.0 6.6E-45 2.3E-49 335.1 18.7 182 301-483 27-229 (229)
19 2r99_A Peptidyl-prolyl CIS-tra 100.0 2.6E-44 8.9E-49 320.1 20.6 154 329-484 11-173 (173)
20 1qng_A Peptidyl-prolyl CIS-tra 100.0 1.6E-44 5.4E-49 320.9 18.9 152 330-483 4-170 (170)
21 2igv_A Peptidyl-prolyl CIS-tra 100.0 2E-44 6.9E-49 321.1 19.3 152 331-484 5-172 (173)
22 3ich_A Peptidyl-prolyl CIS-tra 100.0 1.3E-44 4.5E-49 325.6 17.9 147 336-483 27-177 (188)
23 2z6w_A Peptidyl-prolyl CIS-tra 100.0 4.2E-44 1.4E-48 316.6 20.2 147 336-484 15-165 (165)
24 3s6m_A Peptidyl-prolyl CIS-tra 100.0 2E-44 7E-49 320.5 17.2 153 328-483 2-167 (167)
25 3pmp_A Cyclophilin A; peptidyl 100.0 2.8E-44 9.6E-49 318.0 17.7 148 335-484 13-164 (164)
26 3bkp_A Cyclophilin; malaria, i 100.0 2.9E-44 9.8E-49 332.9 17.5 157 327-484 19-193 (232)
27 1lop_A Cyclophilin A; rotamase 100.0 2.1E-44 7.3E-49 318.8 14.6 151 331-484 1-164 (164)
28 4fru_A Cyclophilin B, peptidyl 100.0 4.3E-44 1.5E-48 322.8 16.9 157 327-484 10-175 (185)
29 2poy_A Peptidyl-prolyl CIS-tra 100.0 1.1E-43 3.7E-48 318.8 18.6 153 328-482 18-186 (186)
30 3rdd_A Peptidyl-prolyl CIS-tra 100.0 1.7E-43 5.7E-48 317.7 19.3 156 327-484 20-184 (184)
31 3k2c_A Peptidyl-prolyl CIS-tra 100.0 3.5E-43 1.2E-47 317.7 20.9 157 327-485 25-192 (193)
32 1v9t_A Cyclophilin B; beta bar 100.0 1.3E-43 4.4E-48 314.4 17.2 153 329-484 4-166 (166)
33 2c3b_A Ppiase, cyclophilin; is 100.0 3.1E-44 1E-48 319.3 11.6 148 335-483 18-172 (172)
34 2ose_A Probable peptidyl-proly 100.0 1.2E-42 4E-47 322.9 17.3 154 328-484 13-207 (234)
35 1ihg_A Cyclophilin 40; ppiase 100.0 1.3E-39 4.5E-44 329.4 19.8 154 329-484 15-185 (370)
36 3rfy_A Peptidyl-prolyl CIS-tra 100.0 2.4E-36 8.3E-41 295.3 9.0 146 327-484 168-355 (369)
37 2ynn_A Coatomer subunit beta'; 100.0 6.6E-29 2.3E-33 243.5 23.9 225 22-293 22-261 (304)
38 1got_B GT-beta; complex (GTP-b 100.0 6.2E-28 2.1E-32 240.4 28.9 234 22-288 64-340 (340)
39 3ow8_A WD repeat-containing pr 100.0 6.2E-28 2.1E-32 238.8 25.5 207 23-293 46-281 (321)
40 1vyh_C Platelet-activating fac 100.0 2.9E-28 9.9E-33 249.4 23.9 224 22-293 117-371 (410)
41 4ery_A WD repeat-containing pr 100.0 1.9E-27 6.6E-32 233.0 26.9 230 22-295 32-272 (312)
42 3ow8_A WD repeat-containing pr 100.0 1.6E-27 5.5E-32 235.9 25.7 188 22-289 131-319 (321)
43 4gqb_B Methylosome protein 50; 100.0 2E-27 7E-32 237.7 25.8 191 23-292 92-290 (344)
44 1vyh_C Platelet-activating fac 100.0 3.7E-28 1.3E-32 248.6 20.9 220 22-289 159-409 (410)
45 2pbi_B Guanine nucleotide-bind 100.0 1.3E-26 4.4E-31 232.5 28.0 189 22-288 163-354 (354)
46 4gqb_B Methylosome protein 50; 100.0 4.3E-27 1.5E-31 235.4 22.9 188 22-290 136-330 (344)
47 1erj_A Transcriptional repress 100.0 1.3E-26 4.3E-31 235.7 24.8 221 22-290 132-388 (393)
48 3fm0_A Protein CIAO1; WDR39,SG 99.9 2.3E-26 7.9E-31 229.6 24.9 194 21-292 24-226 (345)
49 3frx_A Guanine nucleotide-bind 99.9 9.9E-26 3.4E-30 222.5 27.4 214 22-290 74-316 (319)
50 2hes_X YDR267CP; beta-propelle 99.9 1.1E-25 3.7E-30 223.3 27.7 194 27-291 26-230 (330)
51 3iz6_a 40S ribosomal protein R 99.9 7.6E-26 2.6E-30 228.9 26.5 194 25-290 170-374 (380)
52 2pm7_B Protein transport prote 99.9 1.4E-25 4.7E-30 219.1 27.2 194 22-291 18-238 (297)
53 3frx_A Guanine nucleotide-bind 99.9 1.5E-25 5E-30 221.3 27.6 191 24-293 29-229 (319)
54 2xzm_R RACK1; ribosome, transl 99.9 2.2E-25 7.4E-30 222.1 26.3 190 24-290 38-243 (343)
55 4g56_B MGC81050 protein; prote 99.9 5.3E-26 1.8E-30 228.3 21.5 192 22-291 148-343 (357)
56 2pbi_B Guanine nucleotide-bind 99.9 5.7E-25 2E-29 220.4 28.2 197 22-292 73-272 (354)
57 3bg1_A Protein SEC13 homolog; 99.9 9.4E-26 3.2E-30 222.3 21.1 198 22-291 22-247 (316)
58 3fm0_A Protein CIAO1; WDR39,SG 99.9 9.3E-26 3.2E-30 225.2 21.2 233 22-293 70-337 (345)
59 2hes_X YDR267CP; beta-propelle 99.9 3.1E-25 1E-29 220.0 23.8 194 22-290 67-279 (330)
60 1erj_A Transcriptional repress 99.9 5.2E-25 1.8E-29 223.8 26.1 226 22-293 73-343 (393)
61 1nr0_A Actin interacting prote 99.9 3.6E-25 1.2E-29 238.1 26.1 204 22-292 27-271 (611)
62 3vl1_A 26S proteasome regulato 99.9 2.5E-25 8.4E-30 226.5 22.4 224 22-293 106-367 (420)
63 1nr0_A Actin interacting prote 99.9 1.3E-24 4.4E-29 233.8 28.8 241 22-292 68-356 (611)
64 4ery_A WD repeat-containing pr 99.9 2.2E-24 7.4E-29 211.2 26.9 222 22-290 74-311 (312)
65 3iz6_a 40S ribosomal protein R 99.9 1.4E-24 4.9E-29 219.5 25.6 213 22-293 75-331 (380)
66 4g56_B MGC81050 protein; prote 99.9 1.7E-25 6E-30 224.5 18.6 231 21-293 50-303 (357)
67 2ymu_A WD-40 repeat protein; u 99.9 6.5E-25 2.2E-29 232.9 23.2 183 22-288 394-577 (577)
68 2pm7_B Protein transport prote 99.9 4.3E-24 1.5E-28 208.5 26.7 191 24-290 66-284 (297)
69 4aow_A Guanine nucleotide-bind 99.9 9.2E-24 3.1E-28 208.0 29.1 210 25-290 51-336 (340)
70 2ynn_A Coatomer subunit beta'; 99.9 5E-24 1.7E-28 208.7 26.6 163 22-236 106-274 (304)
71 4ggc_A P55CDC, cell division c 99.9 3.4E-24 1.2E-28 209.0 25.1 238 12-291 29-315 (318)
72 2xzm_R RACK1; ribosome, transl 99.9 1.6E-24 5.5E-29 215.8 22.8 237 22-290 85-339 (343)
73 3f3f_A Nucleoporin SEH1; struc 99.9 8E-25 2.7E-29 214.7 20.1 198 22-225 20-253 (351)
74 4h5i_A Guanine nucleotide-exch 99.9 3.7E-24 1.3E-28 215.6 23.9 193 22-290 142-342 (365)
75 3dwl_C Actin-related protein 2 99.9 3E-25 1E-29 222.7 13.9 195 22-293 20-238 (377)
76 3dm0_A Maltose-binding peripla 99.9 1.7E-23 5.9E-28 228.1 28.7 195 24-293 394-594 (694)
77 3gre_A Serine/threonine-protei 99.9 3.3E-24 1.1E-28 219.9 21.0 184 21-232 178-370 (437)
78 3zwl_B Eukaryotic translation 99.9 3.1E-23 1.1E-27 205.8 27.4 250 10-291 31-346 (369)
79 4gq1_A NUP37; propeller, trans 99.9 1.3E-23 4.4E-28 213.6 24.5 276 22-347 98-389 (393)
80 2j04_B YDR362CP, TAU91; beta p 99.9 3.5E-24 1.2E-28 225.9 20.9 192 23-290 223-427 (524)
81 3dm0_A Maltose-binding peripla 99.9 2.4E-23 8.1E-28 227.1 27.9 237 22-289 439-691 (694)
82 2w18_A PALB2, fancn, partner a 99.9 8.7E-24 3E-28 207.6 21.5 190 24-288 144-354 (356)
83 4gga_A P55CDC, cell division c 99.9 2.7E-23 9.4E-28 212.7 26.3 241 9-291 106-395 (420)
84 3k26_A Polycomb protein EED; W 99.9 3.8E-24 1.3E-28 212.5 18.5 233 12-289 73-364 (366)
85 2aq5_A Coronin-1A; WD40 repeat 99.9 1.7E-23 5.7E-28 212.7 23.3 197 26-293 48-256 (402)
86 3gre_A Serine/threonine-protei 99.9 1.3E-23 4.3E-28 215.5 22.4 226 24-293 75-361 (437)
87 2pm9_A Protein WEB1, protein t 99.9 7.6E-24 2.6E-28 214.8 20.4 237 22-293 76-339 (416)
88 2ymu_A WD-40 repeat protein; u 99.9 5.9E-23 2E-27 217.8 27.9 184 22-289 353-537 (577)
89 1gxr_A ESG1, transducin-like e 99.9 1.7E-22 5.8E-27 198.2 27.8 223 22-289 106-335 (337)
90 3jrp_A Fusion protein of prote 99.9 8.1E-23 2.8E-27 203.8 25.9 195 22-292 20-241 (379)
91 3v7d_B Cell division control p 99.9 5.5E-23 1.9E-27 212.4 25.5 218 24-292 131-382 (464)
92 4e54_B DNA damage-binding prot 99.9 2.8E-24 9.4E-29 221.3 14.9 193 24-293 131-329 (435)
93 1r5m_A SIR4-interacting protei 99.9 4.6E-23 1.6E-27 208.7 23.4 236 22-289 117-423 (425)
94 2aq5_A Coronin-1A; WD40 repeat 99.9 1.2E-22 4.1E-27 206.3 26.0 195 22-293 90-301 (402)
95 3ei3_B DNA damage-binding prot 99.9 6.6E-22 2.2E-26 199.1 30.9 190 22-294 82-285 (383)
96 4aez_A CDC20, WD repeat-contai 99.9 1.4E-22 4.8E-27 206.0 25.4 229 22-295 143-384 (401)
97 3mmy_A MRNA export factor; mRN 99.9 1.9E-23 6.6E-28 207.3 18.3 219 25-287 54-342 (368)
98 3bg1_A Protein SEC13 homolog; 99.9 1.1E-23 3.7E-28 207.6 15.9 192 24-290 70-292 (316)
99 1k8k_C P40, ARP2/3 complex 41 99.9 1.4E-22 4.7E-27 202.1 23.9 195 22-293 17-235 (372)
100 3mkq_A Coatomer beta'-subunit; 99.9 1.2E-22 4.2E-27 224.3 25.4 224 22-292 22-260 (814)
101 3vl1_A 26S proteasome regulato 99.9 3E-23 1E-27 211.0 18.5 214 22-293 65-280 (420)
102 1gxr_A ESG1, transducin-like e 99.9 4.3E-22 1.5E-26 195.2 26.0 230 22-293 60-298 (337)
103 3dwl_C Actin-related protein 2 99.9 3.1E-23 1.1E-27 208.0 17.7 205 22-290 64-280 (377)
104 3lrv_A PRE-mRNA-splicing facto 99.9 1.8E-22 6.3E-27 200.8 22.4 198 21-294 44-247 (343)
105 1got_B GT-beta; complex (GTP-b 99.9 1.2E-22 4.2E-27 202.0 21.1 200 47-292 45-258 (340)
106 2j04_B YDR362CP, TAU91; beta p 99.9 4.1E-23 1.4E-27 217.7 18.6 200 25-294 173-389 (524)
107 3v7d_B Cell division control p 99.9 5.5E-22 1.9E-26 204.9 26.6 229 23-288 172-460 (464)
108 3dw8_B Serine/threonine-protei 99.9 2.6E-23 8.8E-28 213.1 16.4 255 22-293 37-375 (447)
109 1sq9_A Antiviral protein SKI8; 99.9 1.7E-22 5.7E-27 203.7 22.0 167 23-229 135-330 (397)
110 1k8k_C P40, ARP2/3 complex 41 99.9 3.6E-22 1.2E-26 199.0 24.1 171 22-241 61-253 (372)
111 1r5m_A SIR4-interacting protei 99.9 2.1E-22 7.3E-27 203.7 22.3 222 22-293 54-321 (425)
112 3ei3_B DNA damage-binding prot 99.9 4.2E-22 1.4E-26 200.5 23.9 216 24-290 130-381 (383)
113 4e54_B DNA damage-binding prot 99.9 8.4E-23 2.9E-27 210.2 19.0 211 22-293 218-432 (435)
114 3sfz_A APAF-1, apoptotic pepti 99.9 9.6E-22 3.3E-26 227.5 29.5 225 22-290 624-912 (1249)
115 4a11_B DNA excision repair pro 99.9 4.5E-22 1.6E-26 200.4 23.2 247 22-295 52-369 (408)
116 1sq9_A Antiviral protein SKI8; 99.9 1.6E-22 5.5E-27 203.9 19.9 228 26-293 27-324 (397)
117 3lrv_A PRE-mRNA-splicing facto 99.9 2.1E-22 7.2E-27 200.3 20.4 191 28-290 88-291 (343)
118 3jrp_A Fusion protein of prote 99.9 1.6E-21 5.4E-26 194.5 26.3 201 13-291 57-287 (379)
119 3k26_A Polycomb protein EED; W 99.9 5.2E-22 1.8E-26 197.0 22.6 233 24-293 34-320 (366)
120 2oaj_A Protein SNI1; WD40 repe 99.9 4.7E-22 1.6E-26 222.9 23.0 238 22-295 444-736 (902)
121 2xyi_A Probable histone-bindin 99.9 9.2E-22 3.1E-26 202.2 22.0 243 9-290 129-409 (430)
122 4aow_A Guanine nucleotide-bind 99.9 1E-21 3.6E-26 193.2 21.5 224 30-293 9-248 (340)
123 4gq1_A NUP37; propeller, trans 99.9 1.5E-21 5.2E-26 198.3 22.8 227 12-287 140-385 (393)
124 2pm9_A Protein WEB1, protein t 99.9 4.8E-22 1.6E-26 201.5 18.6 215 25-290 178-413 (416)
125 3jro_A Fusion protein of prote 99.9 2.2E-21 7.5E-26 213.7 25.1 196 21-292 17-239 (753)
126 3odt_A Protein DOA1; ubiquitin 99.9 3.4E-21 1.2E-25 187.0 23.2 223 24-293 28-257 (313)
127 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.1E-21 7.3E-26 200.4 22.4 209 22-289 111-337 (450)
128 2j04_A TAU60, YPL007P, hypothe 99.9 3E-21 1E-25 201.0 23.1 191 20-289 92-295 (588)
129 1p22_A F-BOX/WD-repeat protein 99.9 8.4E-21 2.9E-25 195.0 26.2 194 24-291 142-365 (435)
130 2oaj_A Protein SNI1; WD40 repe 99.9 1.7E-21 5.8E-26 218.4 22.6 214 22-293 26-244 (902)
131 3i2n_A WD repeat-containing pr 99.9 2.9E-21 9.8E-26 191.2 21.6 189 25-293 80-293 (357)
132 4aez_A CDC20, WD repeat-contai 99.9 8.6E-21 2.9E-25 192.8 25.5 185 28-293 106-295 (401)
133 3dw8_B Serine/threonine-protei 99.9 3.9E-21 1.3E-25 196.8 23.0 232 22-290 186-445 (447)
134 3i2n_A WD repeat-containing pr 99.9 1.5E-21 5.2E-26 193.2 18.6 197 20-292 124-354 (357)
135 1yfq_A Cell cycle arrest prote 99.9 1E-21 3.5E-26 193.7 16.5 230 23-292 21-283 (342)
136 3zwl_B Eukaryotic translation 99.9 6.2E-21 2.1E-25 189.2 21.8 204 47-293 22-251 (369)
137 1pgu_A Actin interacting prote 99.9 1.5E-20 5.1E-25 200.1 25.8 192 24-293 77-285 (615)
138 3odt_A Protein DOA1; ubiquitin 99.9 2E-20 7E-25 181.5 23.8 182 25-293 114-298 (313)
139 1p22_A F-BOX/WD-repeat protein 99.9 2.4E-20 8.1E-25 191.6 25.1 195 24-292 182-415 (435)
140 3f3f_A Nucleoporin SEH1; struc 99.9 1.5E-20 5.2E-25 184.0 22.4 200 24-227 70-343 (351)
141 3sfz_A APAF-1, apoptotic pepti 99.9 1.2E-20 4.2E-25 218.2 24.5 248 14-291 702-1034(1249)
142 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.9E-20 6.7E-25 192.6 22.9 182 24-293 128-310 (445)
143 2w18_A PALB2, fancn, partner a 99.9 1E-20 3.4E-25 185.8 19.2 147 24-219 192-355 (356)
144 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.2E-20 4E-25 194.9 20.6 159 56-293 101-273 (450)
145 1pgu_A Actin interacting prote 99.9 1.3E-20 4.6E-25 200.5 21.7 197 22-293 27-240 (615)
146 3vu4_A KMHSV2; beta-propeller 99.9 6.4E-20 2.2E-24 183.7 25.0 219 25-291 71-336 (355)
147 3jro_A Fusion protein of prote 99.9 2.4E-20 8E-25 205.5 23.3 202 12-291 54-285 (753)
148 2j04_A TAU60, YPL007P, hypothe 99.9 5.3E-21 1.8E-25 199.2 16.7 191 20-294 22-257 (588)
149 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.1E-19 3.7E-24 187.0 25.8 214 26-295 170-395 (445)
150 4h5i_A Guanine nucleotide-exch 99.8 1.2E-20 4E-25 190.0 17.6 151 22-221 185-343 (365)
151 4a11_B DNA excision repair pro 99.8 6.7E-20 2.3E-24 184.5 22.7 231 22-290 153-404 (408)
152 1yfq_A Cell cycle arrest prote 99.8 8.5E-20 2.9E-24 179.8 21.2 200 23-283 66-315 (342)
153 3mkq_A Coatomer beta'-subunit; 99.8 1.5E-19 5.1E-24 199.5 23.2 196 22-236 64-274 (814)
154 1l0q_A Surface layer protein; 99.8 2E-18 6.8E-23 173.7 26.4 185 25-293 2-191 (391)
155 3vu4_A KMHSV2; beta-propeller 99.8 5.6E-19 1.9E-23 176.8 19.6 167 25-222 148-337 (355)
156 3bws_A Protein LP49; two-domai 99.8 1.6E-18 5.5E-23 176.9 22.6 188 22-291 131-334 (433)
157 4ggc_A P55CDC, cell division c 99.8 3.1E-18 1E-22 166.6 23.5 162 22-222 76-316 (318)
158 1l0q_A Surface layer protein; 99.8 6.6E-18 2.3E-22 169.9 26.3 188 22-293 40-235 (391)
159 3mmy_A MRNA export factor; mRN 99.8 1.3E-18 4.5E-23 172.3 20.5 138 46-232 28-171 (368)
160 2xyi_A Probable histone-bindin 99.8 6.6E-19 2.3E-23 180.8 15.9 258 1-291 38-353 (430)
161 3bws_A Protein LP49; two-domai 99.8 1.2E-17 4E-22 170.5 21.9 217 22-290 178-431 (433)
162 4gga_A P55CDC, cell division c 99.8 3.7E-17 1.3E-21 167.0 23.0 170 24-231 198-405 (420)
163 1nir_A Nitrite reductase; hemo 99.7 1.2E-16 4.2E-21 169.1 22.9 225 21-290 145-401 (543)
164 2oit_A Nucleoporin 214KDA; NH2 99.7 4.4E-17 1.5E-21 167.8 14.9 157 22-222 101-279 (434)
165 2hqs_A Protein TOLB; TOLB, PAL 99.7 5.2E-16 1.8E-20 158.7 22.6 174 35-292 159-345 (415)
166 2oit_A Nucleoporin 214KDA; NH2 99.7 1.3E-16 4.3E-21 164.4 17.8 166 24-231 47-232 (434)
167 2hqs_A Protein TOLB; TOLB, PAL 99.7 1.5E-15 5E-20 155.4 23.9 185 21-290 186-386 (415)
168 3u4y_A Uncharacterized protein 99.7 8.3E-15 2.8E-19 143.7 21.6 223 24-293 9-254 (331)
169 1pby_B Quinohemoprotein amine 99.6 3.2E-14 1.1E-18 139.1 23.6 226 10-293 35-312 (337)
170 3vgz_A Uncharacterized protein 99.6 4.8E-14 1.6E-18 139.0 23.6 190 25-292 101-304 (353)
171 1xfd_A DIP, dipeptidyl aminope 99.6 1.7E-15 5.8E-20 165.1 14.1 159 20-212 23-193 (723)
172 2ecf_A Dipeptidyl peptidase IV 99.6 1.2E-14 4E-19 159.0 17.4 115 22-152 45-189 (741)
173 1ri6_A Putative isomerase YBHE 99.6 6.6E-14 2.3E-18 137.1 20.5 150 24-225 4-165 (343)
174 1nir_A Nitrite reductase; hemo 99.6 1.9E-13 6.3E-18 144.7 25.2 209 21-293 186-460 (543)
175 2ojh_A Uncharacterized protein 99.6 2E-13 6.7E-18 130.2 22.0 187 22-292 50-259 (297)
176 3u4y_A Uncharacterized protein 99.6 1.9E-12 6.6E-17 126.7 28.1 153 22-224 92-255 (331)
177 1pby_B Quinohemoprotein amine 99.6 2.8E-13 9.4E-18 132.4 22.0 152 26-231 2-173 (337)
178 1ri6_A Putative isomerase YBHE 99.6 3.5E-13 1.2E-17 131.9 22.2 155 22-220 46-208 (343)
179 3vgz_A Uncharacterized protein 99.6 7.5E-13 2.6E-17 130.4 24.5 182 34-293 68-264 (353)
180 1z68_A Fibroblast activation p 99.5 1.9E-14 6.4E-19 157.0 12.3 153 22-212 24-189 (719)
181 1jmx_B Amine dehydrogenase; ox 99.5 4.5E-13 1.5E-17 131.6 21.1 230 10-292 44-326 (349)
182 3hfq_A Uncharacterized protein 99.5 9.4E-13 3.2E-17 130.2 23.3 202 22-290 48-270 (347)
183 3o4h_A Acylamino-acid-releasin 99.5 2.7E-13 9.2E-18 144.3 18.9 157 18-226 116-279 (582)
184 1xfd_A DIP, dipeptidyl aminope 99.5 6.5E-14 2.2E-18 152.6 14.3 161 22-230 69-298 (723)
185 1jmx_B Amine dehydrogenase; ox 99.5 8.2E-13 2.8E-17 129.8 20.5 158 22-231 8-185 (349)
186 3o4h_A Acylamino-acid-releasin 99.5 9.3E-14 3.2E-18 147.9 13.6 203 22-289 30-274 (582)
187 2z3z_A Dipeptidyl aminopeptida 99.5 2.2E-13 7.7E-18 148.1 16.3 161 22-227 90-299 (706)
188 2ojh_A Uncharacterized protein 99.5 7.2E-13 2.5E-17 126.2 17.0 153 22-225 93-262 (297)
189 2z3z_A Dipeptidyl aminopeptida 99.5 2.2E-12 7.5E-17 140.2 21.7 165 22-232 129-354 (706)
190 2ecf_A Dipeptidyl peptidase IV 99.5 6E-13 2E-17 145.5 16.1 189 21-232 116-378 (741)
191 1k32_A Tricorn protease; prote 99.5 9.8E-13 3.3E-17 149.8 18.3 153 23-232 306-471 (1045)
192 3hfq_A Uncharacterized protein 99.4 3.7E-11 1.3E-15 118.6 24.2 157 22-220 94-270 (347)
193 1jof_A Carboxy-CIS,CIS-muconat 99.4 2.4E-11 8.3E-16 121.4 23.0 158 33-226 117-297 (365)
194 3scy_A Hypothetical bacterial 99.4 9E-11 3.1E-15 116.6 26.2 163 24-223 109-295 (361)
195 3no2_A Uncharacterized protein 99.4 5.3E-11 1.8E-15 114.6 23.6 191 24-294 4-198 (276)
196 4a5s_A Dipeptidyl peptidase 4 99.4 4.8E-12 1.7E-16 138.8 17.8 160 21-219 24-200 (740)
197 1q7f_A NHL, brain tumor CG1071 99.4 1.5E-10 5.1E-15 111.0 26.0 187 23-290 87-279 (286)
198 1k32_A Tricorn protease; prote 99.4 3.6E-12 1.2E-16 145.1 15.8 184 22-291 253-461 (1045)
199 3fvz_A Peptidyl-glycine alpha- 99.4 5.9E-11 2E-15 116.9 22.2 195 22-291 99-322 (329)
200 3scy_A Hypothetical bacterial 99.3 4E-10 1.4E-14 111.9 26.0 170 22-224 58-245 (361)
201 1z68_A Fibroblast activation p 99.3 1.2E-12 4.2E-17 142.6 7.4 102 22-134 68-189 (719)
202 3fvz_A Peptidyl-glycine alpha- 99.3 3.1E-10 1.1E-14 111.7 21.8 210 22-293 32-279 (329)
203 3azo_A Aminopeptidase; POP fam 99.3 3.8E-11 1.3E-15 129.4 16.0 163 23-231 88-284 (662)
204 4a5s_A Dipeptidyl peptidase 4 99.3 1.9E-11 6.5E-16 134.0 13.3 112 22-142 70-200 (740)
205 3e5z_A Putative gluconolactona 99.3 2.1E-09 7.1E-14 103.7 26.2 169 22-232 36-256 (296)
206 1q7f_A NHL, brain tumor CG1071 99.2 1.4E-09 4.9E-14 104.1 23.8 188 22-289 38-236 (286)
207 3azo_A Aminopeptidase; POP fam 99.2 2.1E-10 7.3E-15 123.5 18.8 185 23-289 33-272 (662)
208 3pe7_A Oligogalacturonate lyas 99.2 6.2E-10 2.1E-14 111.2 20.7 154 20-226 42-230 (388)
209 1qks_A Cytochrome CD1 nitrite 99.2 3.5E-09 1.2E-13 112.2 24.7 191 21-229 163-381 (567)
210 1jof_A Carboxy-CIS,CIS-muconat 99.2 9.6E-10 3.3E-14 109.7 19.1 160 22-223 153-343 (365)
211 2oiz_A Aromatic amine dehydrog 99.1 2.3E-09 7.9E-14 107.1 20.5 68 22-91 58-143 (361)
212 1rwi_B Serine/threonine-protei 99.1 2.1E-09 7.3E-14 101.7 19.2 193 22-296 75-269 (270)
213 2oiz_A Aromatic amine dehydrog 99.1 8.8E-10 3E-14 110.2 17.2 100 33-150 29-146 (361)
214 2dg1_A DRP35, lactonase; beta 99.1 2.8E-08 9.7E-13 97.1 25.4 196 22-289 53-261 (333)
215 2dg1_A DRP35, lactonase; beta 99.0 7.5E-09 2.6E-13 101.3 18.9 182 27-290 19-212 (333)
216 1rwi_B Serine/threonine-protei 99.0 1.1E-08 3.7E-13 96.7 18.9 186 22-290 32-221 (270)
217 2xdw_A Prolyl endopeptidase; a 99.0 6.2E-09 2.1E-13 113.4 19.0 113 19-144 130-268 (710)
218 3pe7_A Oligogalacturonate lyas 99.0 3.9E-09 1.3E-13 105.3 15.8 92 46-151 19-118 (388)
219 2bkl_A Prolyl endopeptidase; m 99.0 6.3E-09 2.2E-13 113.1 18.3 115 19-147 126-264 (695)
220 3no2_A Uncharacterized protein 99.0 5.3E-08 1.8E-12 93.5 22.3 159 22-232 45-206 (276)
221 3c5m_A Oligogalacturonate lyas 99.0 2.4E-09 8.2E-14 106.9 12.4 152 21-226 43-230 (396)
222 2gop_A Trilobed protease; beta 99.0 7.9E-09 2.7E-13 101.5 15.8 177 21-290 66-290 (347)
223 3c5m_A Oligogalacturonate lyas 99.0 1.6E-09 5.5E-14 108.2 10.7 154 22-227 89-279 (396)
224 2bkl_A Prolyl endopeptidase; m 98.9 6E-09 2E-13 113.3 14.6 126 55-228 118-268 (695)
225 1xip_A Nucleoporin NUP159; bet 98.9 1.5E-08 5.2E-13 101.8 15.9 132 25-208 97-230 (388)
226 3dsm_A Uncharacterized protein 98.9 1.2E-07 4.2E-12 93.1 22.2 151 24-229 53-220 (328)
227 2gop_A Trilobed protease; beta 98.9 2.3E-08 7.9E-13 98.1 16.8 95 34-151 42-168 (347)
228 3dsm_A Uncharacterized protein 98.9 6.8E-08 2.3E-12 94.9 20.1 187 24-290 94-301 (328)
229 3e5z_A Putative gluconolactona 98.9 1.3E-07 4.4E-12 91.0 20.7 88 47-150 17-105 (296)
230 2z2n_A Virginiamycin B lyase; 98.9 1.8E-06 6E-11 82.2 27.8 186 22-289 23-211 (299)
231 2z2n_A Virginiamycin B lyase; 98.8 7.5E-07 2.6E-11 84.8 23.2 186 22-289 65-253 (299)
232 2xdw_A Prolyl endopeptidase; a 98.8 8.7E-08 3E-12 104.3 18.6 118 55-221 122-268 (710)
233 1xip_A Nucleoporin NUP159; bet 98.8 6.9E-08 2.4E-12 97.0 16.3 141 24-228 48-200 (388)
234 1yr2_A Prolyl oligopeptidase; 98.8 1.5E-07 5.1E-12 103.1 19.6 113 19-145 168-304 (741)
235 2mad_H Methylamine dehydrogena 98.7 1.8E-06 6.2E-11 86.5 23.5 105 36-152 48-165 (373)
236 2hz6_A Endoplasmic reticulum t 98.7 3.6E-09 1.2E-13 106.1 1.4 146 26-228 10-156 (369)
237 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 1.3E-06 4.6E-11 84.0 18.9 189 22-291 79-299 (314)
238 3g4e_A Regucalcin; six bladed 98.6 3.8E-06 1.3E-10 80.9 21.5 160 22-232 62-240 (297)
239 2qc5_A Streptogramin B lactona 98.6 1.5E-05 5.1E-10 75.7 24.9 187 22-289 70-258 (300)
240 2qc5_A Streptogramin B lactona 98.6 3.4E-05 1.2E-09 73.2 27.4 187 22-289 28-216 (300)
241 3sjl_D Methylamine dehydrogena 98.6 3.1E-06 1E-10 84.7 20.1 109 26-152 46-177 (386)
242 1pjx_A Dfpase, DIISOPROPYLFLUO 98.6 4.2E-06 1.4E-10 80.5 19.9 194 23-290 27-255 (314)
243 3g4e_A Regucalcin; six bladed 98.5 1.4E-05 4.6E-10 77.0 22.8 192 24-293 24-231 (297)
244 3hrp_A Uncharacterized protein 98.5 8.7E-06 3E-10 82.5 22.4 111 22-147 139-252 (409)
245 1mda_H Methylamine dehydrogena 98.5 8.8E-07 3E-11 88.4 12.8 103 24-144 31-158 (368)
246 2mad_H Methylamine dehydrogena 98.5 3.8E-05 1.3E-09 76.8 24.3 57 33-92 95-160 (373)
247 2ghs_A AGR_C_1268P; regucalcin 98.4 5.1E-05 1.7E-09 74.1 23.9 142 24-222 60-213 (326)
248 3c75_H MADH, methylamine dehyd 98.4 5.6E-06 1.9E-10 84.1 16.8 109 26-152 86-217 (426)
249 3hrp_A Uncharacterized protein 98.4 3.5E-05 1.2E-09 78.1 22.3 215 23-289 180-408 (409)
250 1mda_H Methylamine dehydrogena 98.4 6.9E-06 2.3E-10 82.0 16.7 54 33-88 94-158 (368)
251 3iuj_A Prolyl endopeptidase; h 98.4 3.6E-06 1.2E-10 91.3 15.7 112 20-146 135-270 (693)
252 3dr2_A Exported gluconolactona 98.4 7.4E-05 2.5E-09 72.0 23.0 170 23-232 54-277 (305)
253 2qe8_A Uncharacterized protein 98.3 4.1E-06 1.4E-10 82.6 13.6 230 22-289 25-276 (343)
254 1qks_A Cytochrome CD1 nitrite 98.3 1.4E-05 4.8E-10 84.5 18.2 112 66-229 164-283 (567)
255 2qe8_A Uncharacterized protein 98.3 4.2E-05 1.4E-09 75.2 19.5 176 22-226 75-283 (343)
256 1yr2_A Prolyl oligopeptidase; 98.2 2.6E-05 8.8E-10 85.2 18.5 95 36-145 244-351 (741)
257 1yiq_A Quinohemoprotein alcoho 98.2 9.8E-05 3.3E-09 80.0 22.7 120 24-151 167-345 (689)
258 3c75_H MADH, methylamine dehyd 98.2 2.3E-05 7.9E-10 79.6 16.0 58 33-92 147-213 (426)
259 3iuj_A Prolyl endopeptidase; h 98.2 7.7E-06 2.6E-10 88.7 13.0 119 55-222 126-269 (693)
260 2ghs_A AGR_C_1268P; regucalcin 98.2 8.5E-05 2.9E-09 72.5 18.9 156 23-232 99-270 (326)
261 3dr2_A Exported gluconolactona 98.2 0.00016 5.3E-09 69.7 19.9 83 48-147 35-118 (305)
262 1kb0_A Quinohemoprotein alcoho 98.1 0.00013 4.4E-09 78.9 20.2 121 24-152 174-354 (677)
263 2hz6_A Endoplasmic reticulum t 98.1 1.7E-06 5.9E-11 86.4 5.1 144 68-294 8-152 (369)
264 3sjl_D Methylamine dehydrogena 98.0 3.9E-05 1.3E-09 76.7 12.7 122 63-229 38-177 (386)
265 2iwa_A Glutamine cyclotransfer 98.0 0.0003 1E-08 66.6 18.1 204 23-291 30-237 (266)
266 2ece_A 462AA long hypothetical 98.0 0.00026 8.9E-09 71.6 18.6 114 24-152 95-245 (462)
267 1yiq_A Quinohemoprotein alcoho 97.9 0.00041 1.4E-08 75.0 20.0 157 36-231 276-515 (689)
268 3nok_A Glutaminyl cyclase; bet 97.9 0.00031 1.1E-08 66.0 16.3 154 24-231 64-220 (268)
269 1kb0_A Quinohemoprotein alcoho 97.9 0.00022 7.7E-09 77.0 16.7 151 36-231 284-517 (677)
270 2iwa_A Glutamine cyclotransfer 97.8 0.00091 3.1E-08 63.3 17.9 155 25-222 76-238 (266)
271 1fwx_A Nitrous oxide reductase 97.8 0.0014 4.8E-08 68.5 20.8 98 21-135 97-216 (595)
272 1npe_A Nidogen, entactin; glyc 97.8 0.0059 2E-07 57.1 23.4 187 24-293 47-240 (267)
273 3hxj_A Pyrrolo-quinoline quino 97.8 0.0013 4.3E-08 63.3 18.6 34 195-229 258-291 (330)
274 3nol_A Glutamine cyclotransfer 97.8 0.0019 6.6E-08 60.5 18.8 156 24-231 52-211 (262)
275 3nol_A Glutamine cyclotransfer 97.8 0.00045 1.5E-08 64.9 14.3 113 25-153 97-210 (262)
276 3nok_A Glutaminyl cyclase; bet 97.7 0.00079 2.7E-08 63.3 15.2 111 25-153 106-219 (268)
277 3mbr_X Glutamine cyclotransfer 97.6 0.0015 5.2E-08 60.6 15.6 111 25-153 75-188 (243)
278 2ece_A 462AA long hypothetical 97.6 0.0013 4.3E-08 66.6 16.1 173 21-228 145-362 (462)
279 3hxj_A Pyrrolo-quinoline quino 97.6 0.0034 1.2E-07 60.2 18.9 144 24-228 107-250 (330)
280 1kv9_A Type II quinohemoprotei 97.6 0.0031 1.1E-07 67.9 20.0 121 24-152 162-341 (668)
281 3mbr_X Glutamine cyclotransfer 97.6 0.011 3.9E-07 54.7 20.6 155 25-231 31-189 (243)
282 3amr_A 3-phytase; beta-propell 97.6 0.0069 2.4E-07 59.2 19.8 199 14-292 30-264 (355)
283 3q7m_A Lipoprotein YFGL, BAMB; 97.5 0.021 7.2E-07 56.1 23.6 146 28-230 191-346 (376)
284 1fwx_A Nitrous oxide reductase 97.4 0.0027 9.1E-08 66.4 15.9 110 33-146 173-310 (595)
285 3qqz_A Putative uncharacterize 97.4 0.037 1.3E-06 51.8 22.3 208 25-290 39-252 (255)
286 3q7m_A Lipoprotein YFGL, BAMB; 97.4 0.018 6.1E-07 56.6 21.3 151 28-230 56-216 (376)
287 2xe4_A Oligopeptidase B; hydro 97.3 0.0045 1.5E-07 67.5 17.3 108 21-145 181-305 (751)
288 2ad6_A Methanol dehydrogenase 97.3 0.0099 3.4E-07 62.7 19.2 121 24-152 160-343 (571)
289 1w6s_A Methanol dehydrogenase 97.2 0.018 6.1E-07 61.0 19.8 121 24-152 166-350 (599)
290 1npe_A Nidogen, entactin; glyc 97.2 0.041 1.4E-06 51.2 20.3 150 24-230 90-247 (267)
291 2xe4_A Oligopeptidase B; hydro 97.2 0.0024 8.2E-08 69.7 12.6 113 59-222 175-305 (751)
292 2fp8_A Strictosidine synthase; 97.2 0.088 3E-06 50.5 22.7 155 10-221 20-216 (322)
293 1flg_A Protein (quinoprotein e 97.1 0.043 1.5E-06 57.8 21.5 69 79-153 291-364 (582)
294 1ijq_A LDL receptor, low-densi 97.1 0.2 6.9E-06 48.1 24.5 191 24-293 41-240 (316)
295 3p5b_L Low density lipoprotein 97.0 0.28 9.7E-06 48.9 25.3 107 24-144 123-234 (400)
296 1kv9_A Type II quinohemoprotei 97.0 0.0067 2.3E-07 65.3 13.9 157 36-231 271-498 (668)
297 2fp8_A Strictosidine synthase; 97.0 0.053 1.8E-06 52.1 19.1 184 24-290 91-312 (322)
298 1w6s_A Methanol dehydrogenase 96.9 0.032 1.1E-06 59.0 18.4 237 25-295 63-346 (599)
299 3v64_C Agrin; beta propeller, 96.9 0.13 4.6E-06 50.2 21.9 104 24-143 84-190 (349)
300 3v65_B Low-density lipoprotein 96.9 0.12 4.2E-06 51.3 21.7 105 24-144 127-234 (386)
301 1k3i_A Galactose oxidase precu 96.7 0.058 2E-06 57.7 18.5 111 24-147 197-326 (656)
302 2ad6_A Methanol dehydrogenase 96.7 0.042 1.4E-06 57.8 17.1 150 36-230 273-503 (571)
303 2p4o_A Hypothetical protein; p 96.7 0.46 1.6E-05 45.0 24.2 108 22-146 40-149 (306)
304 3tc9_A Hypothetical hydrolase; 96.7 0.092 3.1E-06 53.1 18.8 145 24-220 149-300 (430)
305 4hw6_A Hypothetical protein, I 96.6 0.19 6.5E-06 50.8 20.9 108 24-149 152-264 (433)
306 1flg_A Protein (quinoprotein e 96.4 0.11 3.9E-06 54.6 18.3 55 35-92 291-359 (582)
307 2p4o_A Hypothetical protein; p 96.3 0.77 2.6E-05 43.5 24.6 85 48-149 23-109 (306)
308 3m0c_C LDL receptor, low-densi 96.3 0.85 2.9E-05 49.7 24.7 107 24-145 435-547 (791)
309 3sov_A LRP-6, low-density lipo 96.2 0.94 3.2E-05 43.5 22.6 104 24-143 46-153 (318)
310 3v64_C Agrin; beta propeller, 95.9 1 3.4E-05 43.8 21.2 103 24-145 44-148 (349)
311 4a2l_A BT_4663, two-component 95.9 1.4 4.8E-05 47.8 24.3 155 23-224 366-529 (795)
312 3v65_B Low-density lipoprotein 95.8 0.61 2.1E-05 46.1 19.2 102 24-145 87-191 (386)
313 2p9w_A MAL S 1 allergenic prot 95.7 1.6 5.3E-05 42.2 24.8 163 9-220 13-214 (334)
314 3sre_A PON1, serum paraoxonase 95.7 0.72 2.5E-05 45.1 18.9 135 9-147 112-256 (355)
315 1ijq_A LDL receptor, low-densi 95.7 1.5 5.2E-05 41.8 21.8 105 26-146 3-110 (316)
316 3p5b_L Low density lipoprotein 95.6 1.5 5E-05 43.6 21.1 110 23-147 82-193 (400)
317 4a2l_A BT_4663, two-component 95.6 2.9 9.9E-05 45.3 25.1 154 24-225 416-575 (795)
318 3qqz_A Putative uncharacterize 95.5 0.67 2.3E-05 43.1 16.9 117 23-151 79-210 (255)
319 3tc9_A Hypothetical hydrolase; 95.5 0.54 1.8E-05 47.3 17.6 60 59-133 138-198 (430)
320 3kya_A Putative phosphatase; s 95.3 0.46 1.6E-05 48.7 16.2 116 15-143 142-277 (496)
321 1n7d_A LDL receptor, low-densi 95.3 0.068 2.3E-06 57.7 10.5 105 24-143 417-527 (699)
322 4hw6_A Hypothetical protein, I 94.8 0.75 2.6E-05 46.3 16.3 121 24-148 239-377 (433)
323 3sov_A LRP-6, low-density lipo 94.6 1.4 4.8E-05 42.2 17.1 103 24-144 90-197 (318)
324 1k3i_A Galactose oxidase precu 94.4 0.51 1.7E-05 50.2 14.5 118 62-226 190-328 (656)
325 3v9f_A Two-component system se 94.3 4 0.00014 44.1 21.8 152 24-225 373-528 (781)
326 3m0c_C LDL receptor, low-densi 94.1 5.5 0.00019 43.3 22.0 108 24-146 395-504 (791)
327 2p9w_A MAL S 1 allergenic prot 93.9 2.8 9.6E-05 40.4 17.2 85 55-152 10-120 (334)
328 1n7d_A LDL receptor, low-densi 93.9 0.24 8.2E-06 53.3 10.8 154 24-230 464-623 (699)
329 3amr_A 3-phytase; beta-propell 93.6 2.6 9E-05 40.9 16.4 132 9-151 128-271 (355)
330 3v9f_A Two-component system se 93.6 9.3 0.00032 41.2 22.9 151 24-224 417-571 (781)
331 2nnz_A Hypothetical protein; b 93.5 0.16 5.4E-06 43.3 6.7 105 327-460 27-142 (153)
332 3kop_A Uncharacterized protein 92.8 1.3 4.4E-05 38.2 11.1 114 328-462 20-167 (188)
333 1tl2_A L10, protein (tachylect 92.5 2.7 9.1E-05 38.2 13.6 74 58-143 41-115 (236)
334 3pbp_A Nucleoporin NUP82; beta 92.5 3.1 0.00011 41.6 15.3 119 22-146 74-214 (452)
335 3sre_A PON1, serum paraoxonase 92.1 4.8 0.00016 39.2 16.1 100 22-132 58-183 (355)
336 2xzh_A Clathrin heavy chain 1; 91.9 9.3 0.00032 36.8 18.8 225 33-343 47-285 (365)
337 3das_A Putative oxidoreductase 91.5 5.3 0.00018 38.7 15.7 69 52-132 26-102 (347)
338 4a0p_A LRP6, LRP-6, low-densit 91.3 16 0.00056 38.4 23.0 145 24-222 48-198 (628)
339 3kya_A Putative phosphatase; s 90.6 8.4 0.00029 39.3 16.7 60 60-134 141-213 (496)
340 2ism_A Putative oxidoreductase 89.7 6 0.00021 38.2 14.4 76 58-145 31-115 (352)
341 2xbg_A YCF48-like protein; pho 89.7 14 0.00048 35.0 21.0 70 55-141 160-231 (327)
342 4a0p_A LRP6, LRP-6, low-densit 89.5 23 0.00079 37.2 23.1 103 24-143 351-464 (628)
343 2ism_A Putative oxidoreductase 89.4 3.4 0.00012 40.1 12.4 99 22-132 39-153 (352)
344 1cru_A Protein (soluble quinop 89.4 3.6 0.00012 41.5 13.0 63 58-132 27-99 (454)
345 3pbp_A Nucleoporin NUP82; beta 88.8 7.8 0.00027 38.7 14.2 105 34-144 40-158 (452)
346 3a9g_A Putative uncharacterize 88.8 5.4 0.00019 38.7 13.3 75 58-144 29-114 (354)
347 2a2n_A Peptidylprolyl isomeras 88.7 0.017 5.8E-07 50.8 -4.4 106 268-378 19-146 (176)
348 1bpo_A Protein (clathrin); cla 87.8 24 0.00082 35.4 18.1 225 33-343 46-284 (494)
349 3s94_A LRP-6, low-density lipo 86.4 35 0.0012 35.8 20.9 104 24-143 51-158 (619)
350 2xzh_A Clathrin heavy chain 1; 85.3 27 0.00094 33.6 17.5 104 34-156 86-200 (365)
351 1tl2_A L10, protein (tachylect 84.1 3.1 0.00011 37.7 7.8 28 115-144 42-69 (236)
352 3a9g_A Putative uncharacterize 83.2 16 0.00055 35.2 13.4 98 23-132 38-153 (354)
353 2g8s_A Glucose/sorbosone dehyd 83.0 9.7 0.00033 36.8 11.7 66 58-132 18-88 (353)
354 3q6k_A 43.2 kDa salivary prote 82.6 22 0.00075 34.8 14.0 166 91-291 121-306 (381)
355 2be1_A Serine/threonine-protei 81.5 8.3 0.00028 37.2 10.4 122 70-231 11-140 (339)
356 1xi4_A Clathrin heavy chain; a 79.5 53 0.0018 38.1 17.1 77 6-88 17-95 (1630)
357 2fu0_A Cyclophilin, putative; 78.9 0.057 2E-06 46.6 -5.3 104 270-378 5-130 (160)
358 1zx8_A Hypothetical protein TM 78.7 8.2 0.00028 31.9 7.9 100 330-460 13-123 (136)
359 2k7n_A Peptidyl-prolyl CIS-tra 78.5 0.072 2.5E-06 47.7 -5.0 106 270-378 11-136 (203)
360 4gq2_M Nucleoporin NUP120; bet 78.4 2.6 9E-05 46.9 6.5 39 115-153 237-275 (950)
361 3bo7_A Peptidyl-prolyl CIS-tra 78.0 0.053 1.8E-06 48.7 -6.1 103 273-378 9-143 (201)
362 2ok3_A Peptidyl-prolyl CIS-tra 77.9 0.059 2E-06 46.6 -5.6 103 273-378 3-125 (161)
363 2vpj_A Kelch-like protein 12; 76.7 45 0.0016 30.5 17.1 24 124-147 159-187 (301)
364 2x7k_A Peptidyl-prolyl CIS-tra 75.8 0.051 1.7E-06 47.2 -6.6 104 270-378 11-136 (166)
365 2wg3_C Hedgehog-interacting pr 75.7 35 0.0012 34.3 13.4 63 59-132 15-91 (463)
366 2xbg_A YCF48-like protein; pho 74.6 57 0.002 30.6 17.7 63 57-135 121-184 (327)
367 1bpo_A Protein (clathrin); cla 74.5 74 0.0025 31.9 18.5 60 24-87 117-187 (494)
368 2b71_A Cyclophilin-like protei 74.5 0.057 2E-06 48.1 -6.8 103 271-378 39-163 (196)
369 3das_A Putative oxidoreductase 74.3 22 0.00076 34.3 11.1 104 22-133 40-159 (347)
370 3bkp_A Cyclophilin; malaria, i 72.7 0.079 2.7E-06 48.6 -6.5 102 272-375 23-159 (232)
371 1v9t_A Cyclophilin B; beta bar 72.5 0.12 4.1E-06 44.8 -5.1 105 272-378 6-132 (166)
372 2poe_A Cyclophilin-like protei 71.4 0.068 2.3E-06 47.3 -7.0 104 273-378 19-145 (185)
373 4fhn_B Nucleoporin NUP120; pro 71.3 2.6 9E-05 47.9 4.1 39 115-153 239-277 (1139)
374 3s94_A LRP-6, low-density lipo 70.9 1E+02 0.0036 32.0 22.0 102 24-142 360-465 (619)
375 3f7f_A Nucleoporin NUP120; nuc 70.8 6 0.0002 42.2 6.4 37 115-153 223-259 (729)
376 1cru_A Protein (soluble quinop 70.2 32 0.0011 34.4 11.6 103 22-133 35-163 (454)
377 2xn4_A Kelch-like protein 2; s 64.9 26 0.00089 32.3 9.2 24 124-147 204-232 (302)
378 3s25_A Hypothetical 7-bladed b 64.8 47 0.0016 31.2 10.9 67 64-149 110-181 (302)
379 3ii7_A Kelch-like protein 7; p 63.4 44 0.0015 30.7 10.5 24 124-147 101-130 (306)
380 2be1_A Serine/threonine-protei 63.4 10 0.00035 36.6 6.0 117 24-153 10-139 (339)
381 1lop_A Cyclophilin A; rotamase 57.3 0.23 7.8E-06 43.0 -6.3 102 273-378 2-130 (164)
382 2zux_A YESW protein; beta-prop 57.2 1.8E+02 0.0061 30.0 17.3 43 111-153 361-409 (591)
383 4gq2_M Nucleoporin NUP120; bet 56.7 31 0.001 38.3 9.1 35 59-93 237-271 (950)
384 3s6m_A Peptidyl-prolyl CIS-tra 56.1 0.15 5E-06 44.3 -7.8 104 273-378 6-134 (167)
385 2vpj_A Kelch-like protein 12; 55.4 26 0.00089 32.2 7.3 23 124-146 253-280 (301)
386 1xi4_A Clathrin heavy chain; a 52.9 62 0.0021 37.5 10.6 60 24-87 117-187 (1630)
387 2xn4_A Kelch-like protein 2; s 52.2 33 0.0011 31.5 7.5 23 124-146 251-278 (302)
388 3ii7_A Kelch-like protein 7; p 51.4 1.4E+02 0.0049 27.1 18.3 23 124-146 149-180 (306)
389 3ei3_A DNA damage-binding prot 50.2 1.2E+02 0.0043 34.2 12.9 37 114-150 554-597 (1158)
390 4asc_A Kelch repeat and BTB do 47.7 44 0.0015 31.0 7.6 96 35-146 165-279 (315)
391 3sbq_A Nitrous-oxide reductase 47.3 45 0.0015 34.5 7.7 29 116-144 325-354 (638)
392 3sbq_A Nitrous-oxide reductase 46.9 74 0.0025 33.0 9.2 82 60-144 325-408 (638)
393 3ott_A Two-component system se 46.9 2.8E+02 0.0096 29.2 17.7 184 22-293 71-262 (758)
394 3zwu_A Alkaline phosphatase PH 45.7 2.7E+02 0.0094 28.7 14.6 60 115-209 477-548 (592)
395 2zwa_A Leucine carboxyl methyl 45.6 1.2E+02 0.004 32.2 11.2 71 67-146 499-579 (695)
396 1ihg_A Cyclophilin 40; ppiase 45.1 2 6.8E-05 42.1 -2.6 97 279-378 29-156 (370)
397 3s25_A Hypothetical 7-bladed b 40.9 2.2E+02 0.0076 26.3 13.7 30 198-227 151-182 (302)
398 1zgk_A Kelch-like ECH-associat 40.1 61 0.0021 29.9 7.2 23 124-146 262-289 (308)
399 2wg3_C Hedgehog-interacting pr 39.3 3E+02 0.01 27.3 14.3 106 22-135 22-160 (463)
400 3rfy_A Peptidyl-prolyl CIS-tra 38.7 1.3 4.5E-05 43.2 -4.9 43 279-324 187-234 (369)
401 1zgk_A Kelch-like ECH-associat 37.6 56 0.0019 30.1 6.5 23 124-146 215-242 (308)
402 3ei3_A DNA damage-binding prot 37.2 3.7E+02 0.013 30.4 14.1 100 24-143 895-998 (1158)
403 1zkc_A Peptidyl-prolyl CIS-tra 36.5 3.4 0.00012 36.6 -2.2 102 272-378 21-144 (197)
404 2hq6_A Serologically defined c 34.9 4 0.00014 35.8 -2.0 47 272-318 26-77 (185)
405 3elq_A Arylsulfate sulfotransf 32.7 4.3E+02 0.015 27.2 16.2 40 192-232 355-395 (571)
406 2woz_A Kelch repeat and BTB do 31.9 1.1E+02 0.0037 28.2 7.5 24 124-147 253-290 (318)
407 3zwu_A Alkaline phosphatase PH 31.7 91 0.0031 32.4 7.3 57 60-131 478-548 (592)
408 2khf_A PLNJ; anti-microbial, b 29.6 16 0.00055 19.8 0.6 16 354-369 3-18 (26)
409 4a9v_A PHOX; hydrolase, beta-p 27.6 1.6E+02 0.0053 30.5 8.0 61 114-209 476-548 (592)
410 2uvk_A YJHT; unknown function, 27.2 1.2E+02 0.0039 28.5 6.9 19 25-43 21-39 (357)
411 4a9v_A PHOX; hydrolase, beta-p 25.4 2.2E+02 0.0074 29.5 8.6 60 58-132 476-549 (592)
412 4fhn_B Nucleoporin NUP120; pro 25.2 59 0.002 36.8 4.9 35 195-229 241-276 (1139)
413 2zwa_A Leucine carboxyl methyl 24.1 1.5E+02 0.005 31.4 7.5 118 24-147 500-638 (695)
414 3f7f_A Nucleoporin NUP120; nuc 22.3 82 0.0028 33.5 4.9 34 195-230 225-259 (729)
415 2uvk_A YJHT; unknown function, 20.5 82 0.0028 29.6 4.3 29 123-151 315-349 (357)
No 1
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=2.3e-49 Score=352.82 Aligned_cols=174 Identities=67% Similarity=1.154 Sum_probs=155.6
Q ss_pred CCCcccccccccCCCCccCCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCC
Q 011436 308 KPPPDELLAVSDIGNSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLG 387 (485)
Q Consensus 308 ~p~~e~~~~~~~~~~~~~~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~ 387 (485)
+|++|++.+++ ..+.+......|+++|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+
T Consensus 2 ~~~~~~~~~~~--~~~~~~~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~ 79 (176)
T 2a2n_A 2 SPSKEEVMAAT--QAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTG 79 (176)
T ss_dssp -------------CCCSCCCCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTS
T ss_pred Ccchhhhhhcc--cCCCCCCCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEccCCCC
Confidence 46777777765 4555667788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCC-
Q 011436 388 DGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTD- 466 (485)
Q Consensus 388 ~~~~~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~- 466 (485)
+|.|++++||..|++|+...++|+++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++
T Consensus 80 ~g~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~ 159 (176)
T 2a2n_A 80 TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNP 159 (176)
T ss_dssp SSSCCCCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCT
T ss_pred CCCCCCcccCCccccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccC
Confidence 9999999999999999977899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccCeEEEEEEEc
Q 011436 467 KNDKPYQDVKILNVTVP 483 (485)
Q Consensus 467 ~~~~p~~~i~I~~~~v~ 483 (485)
++++|.++|+|.+|+|.
T Consensus 160 ~~~~P~~~v~I~~v~v~ 176 (176)
T 2a2n_A 160 KTDKPYEDVSIINITVK 176 (176)
T ss_dssp TTCCBSSCCBEEEEEEC
T ss_pred CCCccCCCeEEEEEEEC
Confidence 68999999999999874
No 2
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=100.00 E-value=9e-49 Score=344.34 Aligned_cols=158 Identities=66% Similarity=1.122 Sum_probs=151.1
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCcccccccc
Q 011436 327 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHK 406 (485)
Q Consensus 327 ~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 406 (485)
..+..|+++|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.++|.|++++||..|++|+.+
T Consensus 3 ~~~~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~ 82 (160)
T 2fu0_A 3 NTPKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGGESIWGNEFEDEFFD 82 (160)
T ss_dssp --CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCBT
T ss_pred cCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEeCCcCCCCCCCCcccCCCccccccC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcC
Q 011436 407 SLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 484 (485)
Q Consensus 407 ~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~~ 484 (485)
.++|+++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++++++|.++|+|.+|+|+.
T Consensus 83 ~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~~ 160 (160)
T 2fu0_A 83 HLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN 160 (160)
T ss_dssp TBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC-
T ss_pred CcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999889999999999999863
No 3
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=100.00 E-value=5.4e-48 Score=341.51 Aligned_cols=156 Identities=51% Similarity=0.878 Sum_probs=151.6
Q ss_pred CCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccC
Q 011436 328 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 407 (485)
Q Consensus 328 ~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 407 (485)
....|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.|++++||..|++|+.+.
T Consensus 10 ~~~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 89 (166)
T 2x7k_A 10 QPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPD 89 (166)
T ss_dssp CCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTT
T ss_pred CCCEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCccccccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred CCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 011436 408 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 483 (485)
Q Consensus 408 ~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~ 483 (485)
++|.++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++++++|.++|+|.+|+|+
T Consensus 90 l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~ 165 (166)
T 2x7k_A 90 LKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165 (166)
T ss_dssp SCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred cCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence 9999899999999999999999999999999999999999999999999999999999988999999999999986
No 4
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=100.00 E-value=6.2e-48 Score=340.08 Aligned_cols=155 Identities=52% Similarity=0.913 Sum_probs=150.2
Q ss_pred CEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCC
Q 011436 330 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLR 409 (485)
Q Consensus 330 ~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 409 (485)
+.|+++|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.|++++||..+++|..+.++
T Consensus 1 m~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~l~ 80 (161)
T 2ok3_A 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLK 80 (161)
T ss_dssp CEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCCTTCC
T ss_pred CEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEecCCCCCCCCCCCcccCCccccccCcCcC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999877899
Q ss_pred CCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCcccCeEEEEEEEcC
Q 011436 410 HDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKN-DKPYQDVKILNVTVPK 484 (485)
Q Consensus 410 ~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~-~~p~~~i~I~~~~v~~ 484 (485)
|+++|+||||+.+|++++|||||++.++|+||++|+|||||++||+||++|++++++++ ++|.++|+|.+|+|+.
T Consensus 81 h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~ 156 (161)
T 2ok3_A 81 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA 156 (161)
T ss_dssp SCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred cCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999987 9999999999999974
No 5
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=100.00 E-value=2.3e-47 Score=344.42 Aligned_cols=160 Identities=48% Similarity=0.826 Sum_probs=153.7
Q ss_pred cCCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCcccccc
Q 011436 325 TTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEF 404 (485)
Q Consensus 325 ~~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~ 404 (485)
.+.....|+|+|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+|+|||||||+.++|.|++++||..|++|+
T Consensus 15 ~~~~~~~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQgGd~~~~g~Gg~si~g~~f~dE~ 94 (197)
T 1zkc_A 15 VPRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEF 94 (197)
T ss_dssp CCCSCEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEECCTTSSSSCCCBTTBSCBCCCC
T ss_pred CCCCCcEEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEcCCCCCCCCCCCccCCCcccccc
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCC-CCcccCeEEEEEEEc
Q 011436 405 HKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKN-DKPYQDVKILNVTVP 483 (485)
Q Consensus 405 ~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~-~~p~~~i~I~~~~v~ 483 (485)
...++|+++|+||||+.+|++++|||||++.++|+||++|+|||+|++||+||++|++++++.+ ++|.++|+|.+|+|+
T Consensus 95 ~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~ 174 (197)
T 1zkc_A 95 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF 174 (197)
T ss_dssp CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred CcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999987 999999999999987
Q ss_pred C
Q 011436 484 K 484 (485)
Q Consensus 484 ~ 484 (485)
.
T Consensus 175 ~ 175 (197)
T 1zkc_A 175 V 175 (197)
T ss_dssp E
T ss_pred c
Confidence 4
No 6
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=2.3e-47 Score=344.60 Aligned_cols=157 Identities=47% Similarity=0.768 Sum_probs=150.8
Q ss_pred CCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccC
Q 011436 328 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 407 (485)
Q Consensus 328 ~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 407 (485)
....|+|+|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+|+|||||||+.++|.|++++||..|++|+...
T Consensus 37 ~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~~ 116 (196)
T 2b71_A 37 ERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKSIYGEYFEDEINKE 116 (196)
T ss_dssp HSCEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEEEETTSSSSCCCBTTBSCBCCCCCTT
T ss_pred CCcEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCcccccccCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred CCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcC
Q 011436 408 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 484 (485)
Q Consensus 408 ~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~~ 484 (485)
++|+++|+||||+.+|++++|||||+++++|+||++|+|||||++||+||++|++++++++++|.++|+|.+|+|+.
T Consensus 117 l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~ 193 (196)
T 2b71_A 117 LKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAV 193 (196)
T ss_dssp CCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC--
T ss_pred cCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999874
No 7
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=100.00 E-value=3.4e-47 Score=341.58 Aligned_cols=158 Identities=42% Similarity=0.773 Sum_probs=152.1
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCcccccccc
Q 011436 327 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHK 406 (485)
Q Consensus 327 ~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~ 406 (485)
.....|+++|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.|++++||..|++|+.+
T Consensus 14 ~~~~~v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~~ 93 (185)
T 2poe_A 14 LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESIYGRYFDDEIYP 93 (185)
T ss_dssp -CCCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEEEETTSSSSCCCBTTBSCBCCCCCT
T ss_pred CCceEEEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEcCCCCCCCCCCCccCCCcccccccC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCceEEEEcccC----CCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 011436 407 SLRHDRPFTVSMANAG----PNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 482 (485)
Q Consensus 407 ~~~~~~~g~v~~~~~~----~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 482 (485)
.++|.++|+||||+.+ |++++|||||+++++|+||++|+|||||++||+||++|++++++++++|.++|+|.+|+|
T Consensus 94 ~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i 173 (185)
T 2poe_A 94 ELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVI 173 (185)
T ss_dssp TSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEE
T ss_pred CCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEE
Confidence 9999999999999999 999999999999999999999999999999999999999999998899999999999999
Q ss_pred cC
Q 011436 483 PK 484 (485)
Q Consensus 483 ~~ 484 (485)
+.
T Consensus 174 ~~ 175 (185)
T 2poe_A 174 HS 175 (185)
T ss_dssp EC
T ss_pred EC
Confidence 74
No 8
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=100.00 E-value=4.7e-47 Score=343.49 Aligned_cols=158 Identities=50% Similarity=0.865 Sum_probs=152.8
Q ss_pred CCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccC
Q 011436 328 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 407 (485)
Q Consensus 328 ~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 407 (485)
....|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.+++++|+..|++|+.+.
T Consensus 10 ~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQgGd~~~~g~gg~si~g~~f~dE~~~~ 89 (203)
T 2k7n_A 10 QPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPD 89 (203)
T ss_dssp CCSEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEEECSSSSSSCCCTTSCSCBCCCCCCS
T ss_pred CCCEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEcCCCCCCCCCCCccCCCccccccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred CCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcCC
Q 011436 408 LRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPKS 485 (485)
Q Consensus 408 ~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~~~ 485 (485)
++|.++|+||||+.+||+++|||||++.++|+||++|+|||||++|||||++|++++++++++|.++|+|.+|+|+++
T Consensus 90 l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~ 167 (203)
T 2k7n_A 90 LKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGG 167 (203)
T ss_dssp SCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECCC
T ss_pred ccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEec
Confidence 999989999999999999999999999999999999999999999999999999999998899999999999999864
No 9
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=100.00 E-value=1.2e-46 Score=343.22 Aligned_cols=158 Identities=40% Similarity=0.639 Sum_probs=145.3
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEec-----CCCCCCCCCcccC-----
Q 011436 327 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTG-----DPLGDGTGGQSIW----- 396 (485)
Q Consensus 327 ~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G-----~~~~~~~~~~~~~----- 396 (485)
.....|+|+|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+|+|||||| |+.++|.|++++|
T Consensus 4 ~~~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~~~ 83 (201)
T 3bo7_A 4 KKKGYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGF 83 (201)
T ss_dssp -CCEEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCCSS
T ss_pred CCceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCccccccccc
Confidence 456789999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred --CCccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccC
Q 011436 397 --GREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQD 474 (485)
Q Consensus 397 --~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~ 474 (485)
|..|++|+.+.++|+++|+||||+.+|++++|||||++.++|+||++|+|||+|++||+||++|++++++.+++|.++
T Consensus 84 ~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~ 163 (201)
T 3bo7_A 84 PGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKP 163 (201)
T ss_dssp TTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSC
T ss_pred cCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCC
Confidence 889999987899999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred eEEEEEEEcC
Q 011436 475 VKILNVTVPK 484 (485)
Q Consensus 475 i~I~~~~v~~ 484 (485)
|+|.+|+|+.
T Consensus 164 i~I~~~~v~~ 173 (201)
T 3bo7_A 164 PKVEEIIVFK 173 (201)
T ss_dssp CBEEEEEEEE
T ss_pred eEEEEEEEEc
Confidence 9999999874
No 10
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1
Probab=100.00 E-value=5.1e-46 Score=334.83 Aligned_cols=155 Identities=50% Similarity=0.848 Sum_probs=146.1
Q ss_pred CCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhh---------------hcCccCCceEEEEEeCcEEEecCCCCCCC
Q 011436 326 TSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHC---------------RNEYYNNLIFHRVIKGFMIQTGDPLGDGT 390 (485)
Q Consensus 326 ~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~---------------~~~~y~g~~f~rv~~~~~iq~G~~~~~~~ 390 (485)
+.....|+|+|+.|+|+||||++.||+||+||++|| +.+||+|+.||||+|+|||||||+.++|.
T Consensus 20 ~~~~~~v~l~t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~g~G~ 99 (191)
T 1w74_A 20 PLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGR 99 (191)
T ss_dssp -CCSEEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSSSS
T ss_pred CCCCeEEEEEecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCCCCCC
Confidence 345578999999999999999999999999999999 45899999999999999999999988888
Q ss_pred CCcccCCCccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEc--CHHHHHHHhcCCCCCC
Q 011436 391 GGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIK--GMDVVQAIEKVKTDKN 468 (485)
Q Consensus 391 ~~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~--G~~vl~~i~~~~~~~~ 468 (485)
|+ ||..|++|+.+.++|+++|+||||+.+|++++|||||++.++|+||++|+|||||++ ||+||++|++++++++
T Consensus 100 gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~ 176 (191)
T 1w74_A 100 GG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGN 176 (191)
T ss_dssp CC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTT
T ss_pred CC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCC
Confidence 77 488899998789999999999999999999999999999999999999999999999 9999999999999988
Q ss_pred CCcccCeEEEEEEEc
Q 011436 469 DKPYQDVKILNVTVP 483 (485)
Q Consensus 469 ~~p~~~i~I~~~~v~ 483 (485)
++|.++|+|.+|+|+
T Consensus 177 ~~P~~~v~I~~~~i~ 191 (191)
T 1w74_A 177 DRPTDPVVIESITIS 191 (191)
T ss_dssp SCBSSCCEEEEEEEC
T ss_pred CCcCCCeEEEEEEEC
Confidence 999999999999985
No 11
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=100.00 E-value=2.3e-45 Score=329.37 Aligned_cols=158 Identities=46% Similarity=0.788 Sum_probs=149.8
Q ss_pred CCCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccc
Q 011436 326 TSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFH 405 (485)
Q Consensus 326 ~~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~ 405 (485)
+.....|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+++.|++++||.+|++|..
T Consensus 21 ~~~~~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~g~gg~si~g~~~~dE~~ 100 (185)
T 2hq6_A 21 PPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFH 100 (185)
T ss_dssp CCCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEECCTTSSSSCCCCTTSSCBCCCCB
T ss_pred CCCCCEEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEcCCCCCCCCCCCcccCCccccccc
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHH--HHHHhcCCCCCCCCcccCeEEEEEEEc
Q 011436 406 KSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDV--VQAIEKVKTDKNDKPYQDVKILNVTVP 483 (485)
Q Consensus 406 ~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~v--l~~i~~~~~~~~~~p~~~i~I~~~~v~ 483 (485)
..++|+++|+||||+.+|++++|||||+++++|+||++|+|||||+ ||++ +++|++++++++++|.++|+|.+|+|+
T Consensus 101 ~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~ 179 (185)
T 2hq6_A 101 SRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVL 179 (185)
T ss_dssp TTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEE
T ss_pred cCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEe
Confidence 7899999999999999999999999999999999999999999999 8877 478999999999999999999999987
Q ss_pred C
Q 011436 484 K 484 (485)
Q Consensus 484 ~ 484 (485)
+
T Consensus 180 ~ 180 (185)
T 2hq6_A 180 F 180 (185)
T ss_dssp E
T ss_pred C
Confidence 4
No 12
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A
Probab=100.00 E-value=2.9e-45 Score=327.48 Aligned_cols=155 Identities=46% Similarity=0.761 Sum_probs=146.3
Q ss_pred CCCEEEEE-----eCCeEEEEEecCCCChHHHHHHHHhhhcCc--------cCCceEEEEEeCcEEEecCCC-CCCCCCc
Q 011436 328 LPDNVILH-----TTMGDIHMKLYPEECPKTVENFTTHCRNEY--------YNNLIFHRVIKGFMIQTGDPL-GDGTGGQ 393 (485)
Q Consensus 328 ~~~~~~~~-----t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~--------y~g~~f~rv~~~~~iq~G~~~-~~~~~~~ 393 (485)
....|.|+ |+.|+|+||||++.||+||+||++||+++| |+|+.||||+|+|||||||+. ++|.|++
T Consensus 9 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~ 88 (177)
T 1mzw_A 9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVA 88 (177)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCCC
T ss_pred CCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCCC
Confidence 34567776 569999999999999999999999999998 999999999999999999984 7889999
Q ss_pred ccCCCccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCccc
Q 011436 394 SIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQ 473 (485)
Q Consensus 394 ~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~ 473 (485)
++||..|++|. ..++|+++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++++++|.+
T Consensus 89 si~g~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~ 167 (177)
T 1mzw_A 89 SIYRGPFADEN-FKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKL 167 (177)
T ss_dssp CTTSSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSS
T ss_pred ccCCCcccCcc-cccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCC
Confidence 99999999997 68999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred CeEEEEEEEc
Q 011436 474 DVKILNVTVP 483 (485)
Q Consensus 474 ~i~I~~~~v~ 483 (485)
+|+|.+|+++
T Consensus 168 ~v~I~~cG~l 177 (177)
T 1mzw_A 168 PVVISQCGEM 177 (177)
T ss_dssp CEEEEEEEEC
T ss_pred CEEEEeceeC
Confidence 9999999874
No 13
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A
Probab=100.00 E-value=2.4e-45 Score=328.63 Aligned_cols=150 Identities=49% Similarity=0.832 Sum_probs=142.3
Q ss_pred EEEeCCeEEEEEecCCCChHHHHHHHHhhh-----------cCccCCceEEEEEeCcEEEecCCC-CCCCCCcccCCCcc
Q 011436 333 ILHTTMGDIHMKLYPEECPKTVENFTTHCR-----------NEYYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGREF 400 (485)
Q Consensus 333 ~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~-----------~~~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~ 400 (485)
+.+|+.|+|+||||++.||+||+||++||+ .+||+|+.||||+|+|||||||+. +++.|++++||..|
T Consensus 18 i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f 97 (179)
T 2wfi_A 18 INNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFF 97 (179)
T ss_dssp ETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSCB
T ss_pred ECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCCCCCcccCCcc
Confidence 445899999999999999999999999996 579999999999999999999985 78899999999999
Q ss_pred ccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEE
Q 011436 401 EDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNV 480 (485)
Q Consensus 401 ~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~ 480 (485)
++|. ..++|+++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++++++|.++|+|.+|
T Consensus 98 ~dE~-~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~ 176 (179)
T 2wfi_A 98 EDES-FAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSC 176 (179)
T ss_dssp CCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCEEEEEE
T ss_pred cccc-cCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCeEEEeC
Confidence 9997 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 011436 481 TVP 483 (485)
Q Consensus 481 ~v~ 483 (485)
+++
T Consensus 177 G~l 179 (179)
T 2wfi_A 177 GEL 179 (179)
T ss_dssp EEC
T ss_pred eeC
Confidence 874
No 14
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A
Probab=100.00 E-value=6.8e-45 Score=323.19 Aligned_cols=154 Identities=47% Similarity=0.751 Sum_probs=144.4
Q ss_pred CCEEEEE-----eCCeEEEEEecCCCChHHHHHHHHhhhc--Cc-cCCceEEEEEeCcEEEecCCC-CCCCCCcccCCCc
Q 011436 329 PDNVILH-----TTMGDIHMKLYPEECPKTVENFTTHCRN--EY-YNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGRE 399 (485)
Q Consensus 329 ~~~~~~~-----t~~G~i~i~L~~~~aP~~~~nF~~l~~~--~~-y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~~ 399 (485)
...|.|+ |+.|+|+||||++.||+||+||++||++ +| |+|+.||||+|+|||||||+. ++|.|++++||.+
T Consensus 10 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~g~~ 89 (172)
T 2cmt_A 10 LPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRK 89 (172)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred CCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccCCCc
Confidence 4467777 8999999999999999999999999985 78 999999999999999999985 7889999999999
Q ss_pred cccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEE
Q 011436 400 FEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 479 (485)
Q Consensus 400 ~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~ 479 (485)
|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||+|++|||||++|++++++ +++|.++|+|.+
T Consensus 90 f~dE~-~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~ 167 (172)
T 2cmt_A 90 FDDEN-FQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSK-SGKVKEPVIISR 167 (172)
T ss_dssp BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCT-TCCCSSCEEEEE
T ss_pred ccccc-cCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCEEEEE
Confidence 99997 6899999999999999999999999999999999999999999999999999999999985 589999999999
Q ss_pred EEEcC
Q 011436 480 VTVPK 484 (485)
Q Consensus 480 ~~v~~ 484 (485)
|++++
T Consensus 168 ~g~l~ 172 (172)
T 2cmt_A 168 CGELI 172 (172)
T ss_dssp EEEEC
T ss_pred eEeEC
Confidence 99874
No 15
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-45 Score=330.55 Aligned_cols=152 Identities=49% Similarity=0.834 Sum_probs=144.0
Q ss_pred EEEEeCCeEEEEEecCCCChHHHHHHHHhhh-----------cCccCCceEEEEEeCcEEEecCCC-CCCCCCcccCCCc
Q 011436 332 VILHTTMGDIHMKLYPEECPKTVENFTTHCR-----------NEYYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGRE 399 (485)
Q Consensus 332 ~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~-----------~~~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~~ 399 (485)
.+.+|+.|+|+||||++.||+||+||++||+ .+||+|+.||||+|+|||||||+. ++|.|++++||..
T Consensus 27 ~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~G~gg~siyg~~ 106 (192)
T 2he9_A 27 EINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGY 106 (192)
T ss_dssp EETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSSCCCCTTSSC
T ss_pred EECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCCCCCCCcccCCc
Confidence 3446899999999999999999999999995 579999999999999999999985 7899999999999
Q ss_pred cccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEE
Q 011436 400 FEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 479 (485)
Q Consensus 400 ~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~ 479 (485)
|++|. ..++|+++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++++++|.++|+|.+
T Consensus 107 f~dE~-~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~ 185 (192)
T 2he9_A 107 FKDEN-FILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVID 185 (192)
T ss_dssp BCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEE
T ss_pred ccCcc-ccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEE
Confidence 99997 67899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcC
Q 011436 480 VTVPK 484 (485)
Q Consensus 480 ~~v~~ 484 (485)
|+++.
T Consensus 186 ~g~l~ 190 (192)
T 2he9_A 186 CGVLA 190 (192)
T ss_dssp EEECC
T ss_pred eEEEc
Confidence 99875
No 16
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*
Probab=100.00 E-value=4.4e-45 Score=326.65 Aligned_cols=149 Identities=52% Similarity=0.842 Sum_probs=141.5
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhhc--------C---ccCCceEEEEEeCcEEEecCCC-CCCCCCcccCCCcccc
Q 011436 335 HTTMGDIHMKLYPEECPKTVENFTTHCRN--------E---YYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGREFED 402 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~--------~---~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~~~~~ 402 (485)
.|+.|+|+||||++.||+||+||++||++ + ||+|+.||||+|+|||||||+. ++|.|++++||..|++
T Consensus 17 ~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~d 96 (177)
T 1a58_A 17 GNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDD 96 (177)
T ss_dssp TEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSSSCCCCTTSSCBCC
T ss_pred CEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccC
Confidence 36799999999999999999999999985 4 8999999999999999999985 7899999999999999
Q ss_pred ccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEE
Q 011436 403 EFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTV 482 (485)
Q Consensus 403 e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v 482 (485)
|. ..++|+++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++++++|.++|+|.+|++
T Consensus 97 E~-~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~G~ 175 (177)
T 1a58_A 97 EE-FVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGE 175 (177)
T ss_dssp CC-CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEE
T ss_pred cc-cCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEEeEE
Confidence 97 57899999999999999999999999999999999999999999999999999999999999899999999999998
Q ss_pred cC
Q 011436 483 PK 484 (485)
Q Consensus 483 ~~ 484 (485)
+.
T Consensus 176 l~ 177 (177)
T 1a58_A 176 LV 177 (177)
T ss_dssp EC
T ss_pred EC
Confidence 63
No 17
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A
Probab=100.00 E-value=2.7e-45 Score=325.03 Aligned_cols=151 Identities=52% Similarity=0.851 Sum_probs=142.7
Q ss_pred EEEEEeCCeEEEEEecCCCChHHHHHHHHhh--hcCc-cCCceEEEEEeCcEEEecC-CCCCCCCCcccCCCcccccccc
Q 011436 331 NVILHTTMGDIHMKLYPEECPKTVENFTTHC--RNEY-YNNLIFHRVIKGFMIQTGD-PLGDGTGGQSIWGREFEDEFHK 406 (485)
Q Consensus 331 ~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~--~~~~-y~g~~f~rv~~~~~iq~G~-~~~~~~~~~~~~~~~~~~e~~~ 406 (485)
..+..|+.|+|+||||++.||+||+||++|| +.+| |+|+.||||+|+||||||| +.++|.|++++||..|++|. .
T Consensus 18 i~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~-~ 96 (172)
T 2haq_A 18 VMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADEN-L 96 (172)
T ss_dssp EEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCCSSSSCBCCCC-C
T ss_pred EEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCccccCCcccCcC-C
Confidence 3445688999999999999999999999999 7899 9999999999999999999 57889999999999999995 7
Q ss_pred CCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 011436 407 SLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 483 (485)
Q Consensus 407 ~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~ 483 (485)
.++|. +|+||||+.+|++++|||||++.++|+||++|+|||||++||+||++|++++++++++|.++|+|.+|+++
T Consensus 97 ~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l 172 (172)
T 2haq_A 97 NVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172 (172)
T ss_dssp CSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred CcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEEeEEC
Confidence 89999 89999999999999999999999999999999999999999999999999999988899999999999874
No 18
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=100.00 E-value=6.6e-45 Score=335.11 Aligned_cols=182 Identities=38% Similarity=0.586 Sum_probs=149.1
Q ss_pred CccccCCCCCcccccccccCCC-Cc---cCCCCCEEEEEeC-----CeEEEEEecCCCChHHHHHHHHhhhcC-------
Q 011436 301 GRDIFNEKPPPDELLAVSDIGN-SV---TTSLPDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRNE------- 364 (485)
Q Consensus 301 ~rd~~n~~p~~e~~~~~~~~~~-~~---~~~~~~~~~~~t~-----~G~i~i~L~~~~aP~~~~nF~~l~~~~------- 364 (485)
.+++++|+|...........+. +. .......|.|+++ .|+|+||||++.||+||+||++||+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~ 106 (229)
T 1z81_A 27 SENKKVENLVLDDNDENTIIPYYLSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLP 106 (229)
T ss_dssp -----------------CCSCCCGGGGSSSTTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSB
T ss_pred CccccCCCCccccccccccccccccccccCCCCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCC
Confidence 6888999887654444433221 12 2234568888865 899999999999999999999999987
Q ss_pred -ccCCceEEEEEeCcEEEecCC-CCCCCCCcccCCCccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCC
Q 011436 365 -YYNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDN 442 (485)
Q Consensus 365 -~y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~ 442 (485)
||+|+.||||+|+|||||||+ .++|.|++++||..|++|. ..++|+++|+||||+.+|++++|||||++.++|+||+
T Consensus 107 ~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~siyg~~f~dE~-~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg 185 (229)
T 1z81_A 107 VGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDEN-FDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDG 185 (229)
T ss_dssp CSSTTEECCEEETTTEEEECCTTTSSSCCCCBTTBSCCCCCC-CCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBT
T ss_pred ceECCCEEEEEeCCCEEEcCCCcCCCCCCCCccCCCcccccc-cccccCCCcEEEeccCCCCCcccEEEEECCCCcccCC
Confidence 799999999999999999998 5889999999999999997 7899999999999999999999999999999999999
Q ss_pred CCcEEEEEE--cCHHHHHHHhcCCCCCC-CCcccCeEEEEEEEc
Q 011436 443 KHTVFGRVI--KGMDVVQAIEKVKTDKN-DKPYQDVKILNVTVP 483 (485)
Q Consensus 443 ~~~vfG~V~--~G~~vl~~i~~~~~~~~-~~p~~~i~I~~~~v~ 483 (485)
+|+|||||+ +||+||++|++++++++ ++|+++|+|.+|+++
T Consensus 186 ~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~cG~l 229 (229)
T 1z81_A 186 KNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229 (229)
T ss_dssp TBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred CeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEeCeeC
Confidence 999999999 99999999999999887 999999999999874
No 19
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A
Probab=100.00 E-value=2.6e-44 Score=320.09 Aligned_cols=154 Identities=44% Similarity=0.720 Sum_probs=143.6
Q ss_pred CCEEEEE-----eCCeEEEEEecCCCChHHHHHHHHhhh--cCc-cCCceEEEEEeCcEEEecCCC-CCCCCCcccCCCc
Q 011436 329 PDNVILH-----TTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWGRE 399 (485)
Q Consensus 329 ~~~~~~~-----t~~G~i~i~L~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~~~ 399 (485)
...|.|+ |+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+|||||||+. ++|.|++++||..
T Consensus 11 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~ 90 (173)
T 2r99_A 11 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKK 90 (173)
T ss_dssp CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred CCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCccCCCc
Confidence 3466666 789999999999999999999999995 677 999999999999999999985 6888999999999
Q ss_pred cccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEE
Q 011436 400 FEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILN 479 (485)
Q Consensus 400 ~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~ 479 (485)
|++|. ..++|+++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++ +++|.++|+|.+
T Consensus 91 f~dE~-~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I~~ 168 (173)
T 2r99_A 91 FDDEN-FILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVIIAD 168 (173)
T ss_dssp BCCCC-CCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEE
T ss_pred ccCcc-cCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeEEEE
Confidence 99996 7889999999999999999999999999999999999999999999999999999999885 589999999999
Q ss_pred EEEcC
Q 011436 480 VTVPK 484 (485)
Q Consensus 480 ~~v~~ 484 (485)
|++++
T Consensus 169 cG~l~ 173 (173)
T 2r99_A 169 CGEYV 173 (173)
T ss_dssp EEECC
T ss_pred eeeEC
Confidence 99874
No 20
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Probab=100.00 E-value=1.6e-44 Score=320.89 Aligned_cols=152 Identities=48% Similarity=0.817 Sum_probs=142.7
Q ss_pred CEEEEEeC-----CeEEEEEecCCCChHHHHHHHHhhh-cCc--------cCCceEEEEEeCcEEEecCCC-CCCCCCcc
Q 011436 330 DNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCR-NEY--------YNNLIFHRVIKGFMIQTGDPL-GDGTGGQS 394 (485)
Q Consensus 330 ~~~~~~t~-----~G~i~i~L~~~~aP~~~~nF~~l~~-~~~--------y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~ 394 (485)
..|.|+++ .|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+|||||||+. ++|.|+++
T Consensus 4 ~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~s 83 (170)
T 1qng_A 4 SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGES 83 (170)
T ss_dssp CEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCCCB
T ss_pred CEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccCCcCccCccceECCCEEEEEECCCEEEcCCccCCCCCCCcc
Confidence 45666665 8999999999999999999999998 488 999999999999999999984 78899999
Q ss_pred cCCCccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccC
Q 011436 395 IWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQD 474 (485)
Q Consensus 395 ~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~ 474 (485)
+||..|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|+++++ ++++|.++
T Consensus 84 i~g~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~~~ 161 (170)
T 1qng_A 84 IYGRSFTDEN-FNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVKRS 161 (170)
T ss_dssp TTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCSSC
T ss_pred ccCCcccccc-cccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCCCC
Confidence 9999999997 789999999999999999999999999999999999999999999999999999999999 67999999
Q ss_pred eEEEEEEEc
Q 011436 475 VKILNVTVP 483 (485)
Q Consensus 475 i~I~~~~v~ 483 (485)
|+|.+|+++
T Consensus 162 v~I~~cG~l 170 (170)
T 1qng_A 162 VVITDCGEL 170 (170)
T ss_dssp EEEEEEEEC
T ss_pred eEEEeceeC
Confidence 999999874
No 21
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A
Probab=100.00 E-value=2e-44 Score=321.13 Aligned_cols=152 Identities=49% Similarity=0.809 Sum_probs=142.3
Q ss_pred EEEEEeC-----CeEEEEEecCCCChHHHHHHHHhhhc--C--------ccCCceEEEEEeCcEEEecCCC-CCCCCCcc
Q 011436 331 NVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRN--E--------YYNNLIFHRVIKGFMIQTGDPL-GDGTGGQS 394 (485)
Q Consensus 331 ~~~~~t~-----~G~i~i~L~~~~aP~~~~nF~~l~~~--~--------~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~ 394 (485)
.|.|+++ .|+|+||||++.||+||+||++||++ + ||+|+.||||+|+|||||||+. ++|.|+++
T Consensus 5 ~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~s 84 (173)
T 2igv_A 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGES 84 (173)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCCCB
T ss_pred EEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCCCc
Confidence 5566555 89999999999999999999999987 5 7999999999999999999985 78899999
Q ss_pred cCCCccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccC
Q 011436 395 IWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQD 474 (485)
Q Consensus 395 ~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~ 474 (485)
+||.+|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++ +++|.++
T Consensus 85 iyg~~f~dE~-~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~-~~~P~~~ 162 (173)
T 2igv_A 85 IYGEKFPDEN-FKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKD 162 (173)
T ss_dssp TTBSCBCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSSC
T ss_pred cCCCcccCcc-cccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCCCCC
Confidence 9999999997 6899999999999999999999999999999999999999999999999999999999984 5899999
Q ss_pred eEEEEEEEcC
Q 011436 475 VKILNVTVPK 484 (485)
Q Consensus 475 i~I~~~~v~~ 484 (485)
|+|.+|++++
T Consensus 163 v~I~~~g~l~ 172 (173)
T 2igv_A 163 CMIADCGQLK 172 (173)
T ss_dssp EEEEEEEEEC
T ss_pred EEEEEeEEEc
Confidence 9999999875
No 22
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=1.3e-44 Score=325.61 Aligned_cols=147 Identities=54% Similarity=0.858 Sum_probs=141.3
Q ss_pred eCCeEEEEEecCCCChHHHHHHHHhhh--cCc-cCCceEEEEEeCcEEEecC-CCCCCCCCcccCCCccccccccCCCCC
Q 011436 336 TTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGD-PLGDGTGGQSIWGREFEDEFHKSLRHD 411 (485)
Q Consensus 336 t~~G~i~i~L~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~-~~~~~~~~~~~~~~~~~~e~~~~~~~~ 411 (485)
|+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+||||||| +.++|.|++++||..|++|. ..++|.
T Consensus 27 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~-~~l~h~ 105 (188)
T 3ich_A 27 EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDEN-FKLKHY 105 (188)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC-CCSCCC
T ss_pred EeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCCCCCccccCCcccccc-cCcccC
Confidence 789999999999999999999999995 689 9999999999999999999 57889999999999999995 789999
Q ss_pred CceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEc
Q 011436 412 RPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVP 483 (485)
Q Consensus 412 ~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~ 483 (485)
++|+||||+.+|++++|||||++.++|+||++|+|||||++||+||++|++++++++++|.++|+|.+|+++
T Consensus 106 ~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l 177 (188)
T 3ich_A 106 GPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177 (188)
T ss_dssp STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred CCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeEEE
Confidence 999999999999999999999999999999999999999999999999999999988899999999999986
No 23
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Probab=100.00 E-value=4.2e-44 Score=316.61 Aligned_cols=147 Identities=48% Similarity=0.790 Sum_probs=139.9
Q ss_pred eCCeEEEEEecCCCChHHHHHHHHhhh--cCc-cCCceEEEEEeCcEEEecCC-CCCCCCCcccCCCccccccccCCCCC
Q 011436 336 TTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWGREFEDEFHKSLRHD 411 (485)
Q Consensus 336 t~~G~i~i~L~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~~~~~~~~e~~~~~~~~ 411 (485)
|+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+|||||||+ .++|.|++++||..|++|. ..++|.
T Consensus 15 t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~-~~l~h~ 93 (165)
T 2z6w_A 15 KPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDEN-FTLKHV 93 (165)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC-CCSCCC
T ss_pred EeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCcccCcc-cccccC
Confidence 578999999999999999999999999 899 99999999999999999999 4688899999999999996 789999
Q ss_pred CceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcC
Q 011436 412 RPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 484 (485)
Q Consensus 412 ~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~~ 484 (485)
++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|+++++ ++++|.++|+|.+|++++
T Consensus 94 ~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~g~l~ 165 (165)
T 2z6w_A 94 GPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDCGQLS 165 (165)
T ss_dssp STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEEEECC
T ss_pred CCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEEeEEEC
Confidence 999999999999999999999999999999999999999999999999999985 679999999999999874
No 24
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=100.00 E-value=2e-44 Score=320.50 Aligned_cols=153 Identities=37% Similarity=0.551 Sum_probs=140.9
Q ss_pred CCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccC
Q 011436 328 LPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKS 407 (485)
Q Consensus 328 ~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~ 407 (485)
+.+.|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+.+ +...++.++++|....
T Consensus 2 p~~~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~--~~~~~~~~~~~E~~~~ 79 (167)
T 3s6m_A 2 PGSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEPGL--KQKPTDAPIANEANNG 79 (167)
T ss_dssp CCCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEESSEETTT--EECCCCCCBCCCGGGC
T ss_pred CCcEEEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEeccccCCC--CCCCCCCccCCccccc
Confidence 56789999999999999999999999999999999999999999999999999999986543 3345678899998778
Q ss_pred CCCCCceEEEEcc-cCCCCCCceEEEEccCCCCCCCC--------CcEEEEEEcCHHHHHHHhcCCCCC----CCCcccC
Q 011436 408 LRHDRPFTVSMAN-AGPNTNGSQFFITTVATPWLDNK--------HTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQD 474 (485)
Q Consensus 408 ~~~~~~g~v~~~~-~~~~~~~sqf~i~~~~~~~ld~~--------~~vfG~V~~G~~vl~~i~~~~~~~----~~~p~~~ 474 (485)
++| .+|+||||+ .+|++++|||||++.++++||++ |+|||||++|||||++|+++++++ +++|+++
T Consensus 80 l~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~ 158 (167)
T 3s6m_A 80 LKN-DTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDD 158 (167)
T ss_dssp CCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSC
T ss_pred ccC-CccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCC
Confidence 887 679999999 67999999999999999999998 999999999999999999999987 6899999
Q ss_pred eEEEEEEEc
Q 011436 475 VKILNVTVP 483 (485)
Q Consensus 475 i~I~~~~v~ 483 (485)
|+|.+|+|+
T Consensus 159 v~I~~~~il 167 (167)
T 3s6m_A 159 VVIEKAVVV 167 (167)
T ss_dssp CEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999999985
No 25
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=100.00 E-value=2.8e-44 Score=318.05 Aligned_cols=148 Identities=48% Similarity=0.794 Sum_probs=141.1
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhh--cCc-cCCceEEEEEeCcEEEecC-CCCCCCCCcccCCCccccccccCCCC
Q 011436 335 HTTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGD-PLGDGTGGQSIWGREFEDEFHKSLRH 410 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~-~~~~~~~~~~~~~~~~~~e~~~~~~~ 410 (485)
.|+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+||||||| +.+++.|++++|+.++++|. ..++|
T Consensus 13 ~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~~~dE~-~~l~h 91 (164)
T 3pmp_A 13 DKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEKFADEN-FQVKH 91 (164)
T ss_dssp TEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSCBCCCC-CCSCC
T ss_pred CEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCccccccc-cccCc
Confidence 3999999999999999999999999999 788 9999999999999999999 57889999999999999995 88999
Q ss_pred CCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcC
Q 011436 411 DRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 484 (485)
Q Consensus 411 ~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~~ 484 (485)
.++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++ +++|.++|+|.+|+++.
T Consensus 92 ~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~cg~l~ 164 (164)
T 3pmp_A 92 TKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCGTVA 164 (164)
T ss_dssp CSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEEEEC-
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEeCeEEC
Confidence 99999999999999999999999999999999999999999999999999999986 69999999999999863
No 26
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=2.9e-44 Score=332.87 Aligned_cols=157 Identities=39% Similarity=0.681 Sum_probs=147.4
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccC--CCcccccc
Q 011436 327 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIW--GREFEDEF 404 (485)
Q Consensus 327 ~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~--~~~~~~e~ 404 (485)
.....|+|+|+.|+|+|+||++.||+||+||++||+.+||+|+.||||+++|||||||+.++|.|++++| |..|++|+
T Consensus 19 ~~~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQgGdp~~~G~Gg~si~~~g~~f~dE~ 98 (232)
T 3bkp_A 19 STRGKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVET 98 (232)
T ss_dssp SCBCEEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEECCTTSSSSCCCCCTTTTCCBCCCC
T ss_pred CCCCEEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEcCCCCCCCCCCCccccCCCccCCcc
Confidence 4456899999999999999999999999999999999999999999999999999999999999999999 89999998
Q ss_pred ccCCCCCCceEEEEcccCC--------------CCCCceEEEEccCCCCCCCCCcEEEEEEcCHHH--HHHHhcCCCCCC
Q 011436 405 HKSLRHDRPFTVSMANAGP--------------NTNGSQFFITTVATPWLDNKHTVFGRVIKGMDV--VQAIEKVKTDKN 468 (485)
Q Consensus 405 ~~~~~~~~~g~v~~~~~~~--------------~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~v--l~~i~~~~~~~~ 468 (485)
...++|+++|+||||+.++ ++++|||||++.++|+||++|+|||+|+ ||++ |++|++++++++
T Consensus 99 ~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~ 177 (232)
T 3bkp_A 99 HPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKE 177 (232)
T ss_dssp CTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGG
T ss_pred ccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCCC
Confidence 7889999999999999987 6999999999999999999999999999 7765 899999999999
Q ss_pred CCcccCeEEEEEEEcC
Q 011436 469 DKPYQDVKILNVTVPK 484 (485)
Q Consensus 469 ~~p~~~i~I~~~~v~~ 484 (485)
++|+++|+|.+|+|+.
T Consensus 178 ~~P~~~i~I~~~~vl~ 193 (232)
T 3bkp_A 178 DRPMTPPFIKSVDVLW 193 (232)
T ss_dssp GCBSSCCBEEEEEEEE
T ss_pred CCcCCCeEEEEEEEEc
Confidence 9999999999999874
No 27
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=100.00 E-value=2.1e-44 Score=318.81 Aligned_cols=151 Identities=40% Similarity=0.619 Sum_probs=139.0
Q ss_pred EEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCCCC
Q 011436 331 NVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRH 410 (485)
Q Consensus 331 ~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 410 (485)
.|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+... .+.++++.+|++|+...++|
T Consensus 1 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~--~g~~~~g~~~~dE~~~~l~~ 78 (164)
T 1lop_A 1 MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPG--MKQKATKEPIKNEANNGLKN 78 (164)
T ss_dssp CEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEESSEETT--TEECCCCCCBCCCCCSSCCC
T ss_pred CEEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEecCCcccC--CCcCCCCCcccccccccccc
Confidence 3789999999999999999999999999999999999999999999999999998632 25567889999998777888
Q ss_pred CCceEEEEccc-CCCCCCceEEEEccCCCCCCCC--------CcEEEEEEcCHHHHHHHhcCCCCC----CCCcccCeEE
Q 011436 411 DRPFTVSMANA-GPNTNGSQFFITTVATPWLDNK--------HTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQDVKI 477 (485)
Q Consensus 411 ~~~g~v~~~~~-~~~~~~sqf~i~~~~~~~ld~~--------~~vfG~V~~G~~vl~~i~~~~~~~----~~~p~~~i~I 477 (485)
. +|+||||+. +|++++|||||++.++++||++ |+|||+|++|||||++|+++++++ +++|.++|+|
T Consensus 79 ~-~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I 157 (164)
T 1lop_A 79 T-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157 (164)
T ss_dssp C-TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEE
T ss_pred C-ccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEE
Confidence 4 799999974 7999999999999999999998 999999999999999999999875 5899999999
Q ss_pred EEEEEcC
Q 011436 478 LNVTVPK 484 (485)
Q Consensus 478 ~~~~v~~ 484 (485)
.+|+|++
T Consensus 158 ~~~~v~~ 164 (164)
T 1lop_A 158 ESVTVSE 164 (164)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 9999874
No 28
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Probab=100.00 E-value=4.3e-44 Score=322.83 Aligned_cols=157 Identities=50% Similarity=0.790 Sum_probs=146.0
Q ss_pred CCCCEEEEEeC-----CeEEEEEecCCCChHHHHHHHHhhhc--C-ccCCceEEEEEeCcEEEecCCC-CCCCCCcccCC
Q 011436 327 SLPDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRN--E-YYNNLIFHRVIKGFMIQTGDPL-GDGTGGQSIWG 397 (485)
Q Consensus 327 ~~~~~~~~~t~-----~G~i~i~L~~~~aP~~~~nF~~l~~~--~-~y~g~~f~rv~~~~~iq~G~~~-~~~~~~~~~~~ 397 (485)
.....|.|+++ .|+|+||||++.||+||+||++||++ | +|+|+.||||+|+|||||||+. +++.|+.++||
T Consensus 10 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g 89 (185)
T 4fru_A 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYG 89 (185)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB
T ss_pred CcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCCCCccccC
Confidence 34456766665 99999999999999999999999976 5 7999999999999999999985 78899999999
Q ss_pred CccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEE
Q 011436 398 REFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKI 477 (485)
Q Consensus 398 ~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I 477 (485)
..|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||||++||+||++|++++++.+++|.++|+|
T Consensus 90 ~~f~de~-~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I 168 (185)
T 4fru_A 90 ERFPDEN-FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTI 168 (185)
T ss_dssp SCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEE
T ss_pred CccCccc-cccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEE
Confidence 9999997 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcC
Q 011436 478 LNVTVPK 484 (485)
Q Consensus 478 ~~~~v~~ 484 (485)
.+|+++.
T Consensus 169 ~~~g~l~ 175 (185)
T 4fru_A 169 ADCGKIE 175 (185)
T ss_dssp EEEEEEE
T ss_pred EEceEEe
Confidence 9998763
No 29
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Probab=100.00 E-value=1.1e-43 Score=318.77 Aligned_cols=153 Identities=52% Similarity=0.866 Sum_probs=141.5
Q ss_pred CCCEEEEEeC-----CeEEEEEecCCCChHHHHHHHHhhh--cCc--------cCCceEEEEEeCcEEEecCCC-CCCCC
Q 011436 328 LPDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCR--NEY--------YNNLIFHRVIKGFMIQTGDPL-GDGTG 391 (485)
Q Consensus 328 ~~~~~~~~t~-----~G~i~i~L~~~~aP~~~~nF~~l~~--~~~--------y~g~~f~rv~~~~~iq~G~~~-~~~~~ 391 (485)
....|.|+++ .|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+|||||||+. ++|.|
T Consensus 18 ~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~~G~g 97 (186)
T 2poy_A 18 GNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTG 97 (186)
T ss_dssp CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred CCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCCCCCC
Confidence 3456777765 9999999999999999999999996 578 999999999999999999984 78899
Q ss_pred CcccCCCccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 011436 392 GQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKP 471 (485)
Q Consensus 392 ~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p 471 (485)
++++||..|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|+++++ ++++|
T Consensus 98 g~si~g~~f~dE~-~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-~~~~P 175 (186)
T 2poy_A 98 GESIYGSKFRDEN-FVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKP 175 (186)
T ss_dssp CCCTTC-CBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCC
T ss_pred CCccCCCcccCcc-cccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC-CCCCC
Confidence 9999999999997 789999999999999999999999999999999999999999999999999999999998 56999
Q ss_pred ccCeEEEEEEE
Q 011436 472 YQDVKILNVTV 482 (485)
Q Consensus 472 ~~~i~I~~~~v 482 (485)
.++|+|.+|+.
T Consensus 176 ~~~v~I~~cG~ 186 (186)
T 2poy_A 176 TKSVCITASGV 186 (186)
T ss_dssp SSCEEEEEEEC
T ss_pred CCCEEEEeCCC
Confidence 99999999973
No 30
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}
Probab=100.00 E-value=1.7e-43 Score=317.70 Aligned_cols=156 Identities=45% Similarity=0.769 Sum_probs=145.2
Q ss_pred CCCCEEEEEeC-----CeEEEEEecCCCChHHHHHHHHhhhcCc---cCCceEEEEEeCcEEEecCC-CCCCCCCcccCC
Q 011436 327 SLPDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRNEY---YNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWG 397 (485)
Q Consensus 327 ~~~~~~~~~t~-----~G~i~i~L~~~~aP~~~~nF~~l~~~~~---y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~~~ 397 (485)
.....|.|+++ .|+|+||||++.||+||+||++||++++ |+|+.||||+|+|||||||+ .+++.+++++|+
T Consensus 20 ~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g 99 (184)
T 3rdd_A 20 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYG 99 (184)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTB
T ss_pred CCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCCcccCC
Confidence 34567889887 9999999999999999999999997655 99999999999999999995 678899999999
Q ss_pred CccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEE
Q 011436 398 REFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKI 477 (485)
Q Consensus 398 ~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I 477 (485)
..|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|+++++ ++++|.++|+|
T Consensus 100 ~~~~de~-~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~-~~g~P~~~v~I 177 (184)
T 3rdd_A 100 EKFEDEN-FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITI 177 (184)
T ss_dssp SCBCCCC-CCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCSSCEEE
T ss_pred CcccCcc-cccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCC-CCCCCcCCeEE
Confidence 9999997 688999999999999999999999999999999999999999999999999999999987 46999999999
Q ss_pred EEEEEcC
Q 011436 478 LNVTVPK 484 (485)
Q Consensus 478 ~~~~v~~ 484 (485)
.+|++++
T Consensus 178 ~~cG~l~ 184 (184)
T 3rdd_A 178 ADCGQLE 184 (184)
T ss_dssp EEEEECC
T ss_pred EeCeEEC
Confidence 9999874
No 31
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.5e-43 Score=317.68 Aligned_cols=157 Identities=45% Similarity=0.722 Sum_probs=144.7
Q ss_pred CCCCEEEEE-----eCCeEEEEEecCCCChHHHHHHHHhhh--cCc-cCCceEEEEEeCcEEEecCC-CCCCCCCcccCC
Q 011436 327 SLPDNVILH-----TTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGDP-LGDGTGGQSIWG 397 (485)
Q Consensus 327 ~~~~~~~~~-----t~~G~i~i~L~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~~-~~~~~~~~~~~~ 397 (485)
.....|.|+ |+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+|||||||+ .+++.++.++||
T Consensus 25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g 104 (193)
T 3k2c_A 25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYG 104 (193)
T ss_dssp -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTS
T ss_pred cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCC
Confidence 344557766 789999999999999999999999998 667 99999999999999999994 678899999999
Q ss_pred CccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCcc--cCe
Q 011436 398 REFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKPY--QDV 475 (485)
Q Consensus 398 ~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p~--~~i 475 (485)
..|++|. ..++|.++|+||||+.+|++++|||||++.++|+||++|+|||||++|||||++|++++++ +++|. ++|
T Consensus 105 ~~f~dE~-~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v 182 (193)
T 3k2c_A 105 EKFPDEN-FELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRI 182 (193)
T ss_dssp SCBCCCC-CCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCE
T ss_pred Ccccccc-cccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccE
Confidence 9999995 7899999999999999999999999999999999999999999999999999999999997 58999 999
Q ss_pred EEEEEEEcCC
Q 011436 476 KILNVTVPKS 485 (485)
Q Consensus 476 ~I~~~~v~~~ 485 (485)
+|.+|+++++
T Consensus 183 ~I~~cG~l~~ 192 (193)
T 3k2c_A 183 EIRDCGVLGS 192 (193)
T ss_dssp EEEEEEECC-
T ss_pred EEEEceEeCC
Confidence 9999999863
No 32
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=100.00 E-value=1.3e-43 Score=314.44 Aligned_cols=153 Identities=37% Similarity=0.566 Sum_probs=139.2
Q ss_pred CCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCccccccccCC
Q 011436 329 PDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSL 408 (485)
Q Consensus 329 ~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~e~~~~~ 408 (485)
...|+|+|+.|+|+||||++.||+||+||++||+.+||+|+.||||+|+|||||||+.+.+. ...++.+|++|....+
T Consensus 4 ~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQgGd~~~~~~--~~~~g~~~~dE~~~~l 81 (166)
T 1v9t_A 4 DPHVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ--QKKPNPPIKNEADNGL 81 (166)
T ss_dssp SCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEESSBCTTCC--BCCCCCCBCCCGGGSC
T ss_pred CeEEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEcCCcCcCCC--CCCCCCcccccccccc
Confidence 45899999999999999999999999999999999999999999999999999999976542 2345788999986667
Q ss_pred CCCCceEEEEccc-CCCCCCceEEEEccCCCCCCCC-----CcEEEEEEcCHHHHHHHhcCCCCC----CCCcccCeEEE
Q 011436 409 RHDRPFTVSMANA-GPNTNGSQFFITTVATPWLDNK-----HTVFGRVIKGMDVVQAIEKVKTDK----NDKPYQDVKIL 478 (485)
Q Consensus 409 ~~~~~g~v~~~~~-~~~~~~sqf~i~~~~~~~ld~~-----~~vfG~V~~G~~vl~~i~~~~~~~----~~~p~~~i~I~ 478 (485)
+| .+|+||||+. +|++++|||||++.++|+||++ |+|||+|++|||||++|+++++++ +++|.++|+|.
T Consensus 82 ~~-~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I~ 160 (166)
T 1v9t_A 82 RN-TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 160 (166)
T ss_dssp CC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEE
T ss_pred cC-CceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEEE
Confidence 66 5699999997 6999999999999999999998 999999999999999999999976 47999999999
Q ss_pred EEEEcC
Q 011436 479 NVTVPK 484 (485)
Q Consensus 479 ~~~v~~ 484 (485)
+|+|++
T Consensus 161 ~~~v~~ 166 (166)
T 1v9t_A 161 SATVLP 166 (166)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999874
No 33
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1
Probab=100.00 E-value=3.1e-44 Score=319.34 Aligned_cols=148 Identities=47% Similarity=0.779 Sum_probs=112.8
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhh--cCc-cCCceEEEEEeCcEEEecC-CCCCCCCCcccCCCccccccccCCCC
Q 011436 335 HTTMGDIHMKLYPEECPKTVENFTTHCR--NEY-YNNLIFHRVIKGFMIQTGD-PLGDGTGGQSIWGREFEDEFHKSLRH 410 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~--~~~-y~g~~f~rv~~~~~iq~G~-~~~~~~~~~~~~~~~~~~e~~~~~~~ 410 (485)
.|+.|+|+||||++.||+||+||++||+ .+| |+|+.||||+|+||||||| +.++|.|++++||..|++|. ..++|
T Consensus 18 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~f~dE~-~~~~h 96 (172)
T 2c3b_A 18 ETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADEN-FSRKH 96 (172)
T ss_dssp CCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC-----------------------CHHH
T ss_pred ecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCcccCCCcccCcc-ccccc
Confidence 4888999999999999999999999999 678 9999999999999999999 68889999999999999995 78899
Q ss_pred CCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEc--CHHHHHHHhcCCCCCCC-CcccCeEEEEEEEc
Q 011436 411 DRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIK--GMDVVQAIEKVKTDKND-KPYQDVKILNVTVP 483 (485)
Q Consensus 411 ~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~--G~~vl~~i~~~~~~~~~-~p~~~i~I~~~~v~ 483 (485)
+++|+||||+.+|++++|||||++.++|+||++|+|||||++ ||+||++|+++++++.+ +|.++|+|.+|+.+
T Consensus 97 ~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l 172 (172)
T 2c3b_A 97 DKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172 (172)
T ss_dssp HHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred CCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence 999999999999999999999999999999999999999999 99999999999998754 99999999999874
No 34
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}
Probab=100.00 E-value=1.2e-42 Score=322.89 Aligned_cols=154 Identities=24% Similarity=0.380 Sum_probs=138.8
Q ss_pred CCCEEEEE-----eCCeEEEEEecCCCChHHHHHHHHhhhc-----------------C--c-cCCceEEEEEeCcEEEe
Q 011436 328 LPDNVILH-----TTMGDIHMKLYPEECPKTVENFTTHCRN-----------------E--Y-YNNLIFHRVIKGFMIQT 382 (485)
Q Consensus 328 ~~~~~~~~-----t~~G~i~i~L~~~~aP~~~~nF~~l~~~-----------------~--~-y~g~~f~rv~~~~~iq~ 382 (485)
....|.|+ |+.|+|+||||++.||+||+||++||++ | | |+|+.||||+++|||||
T Consensus 13 ~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQg 92 (234)
T 2ose_A 13 KNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVS 92 (234)
T ss_dssp SSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEEE
T ss_pred CCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEEc
Confidence 34467776 9999999999999999999999999984 4 7 99999999999999999
Q ss_pred cC-CCCCCCCCcccCCCc-----cccccccCCCCCCceEEEEcc----cCCCCCCceEEEEccC------CCCCCCCCcE
Q 011436 383 GD-PLGDGTGGQSIWGRE-----FEDEFHKSLRHDRPFTVSMAN----AGPNTNGSQFFITTVA------TPWLDNKHTV 446 (485)
Q Consensus 383 G~-~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~~g~v~~~~----~~~~~~~sqf~i~~~~------~~~ld~~~~v 446 (485)
|| +.++|.|++++||.. |+ + ..++|.++|+||||+ .+|++++|||||++.+ +|+||++|+|
T Consensus 93 Gd~~~g~G~Gg~siyg~~~~p~~f~-~--~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tV 169 (234)
T 2ose_A 93 GDIYNSNGSSAGTVYCDEPIPPVFG-D--YFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVV 169 (234)
T ss_dssp CCCC----CCCCCTTTTCCBCCCCC-S--CCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEE
T ss_pred CCccCCCCCCCccccCCccCccccc-C--cCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCeeE
Confidence 99 578899999999987 66 3 478999999999999 8999999999999999 9999999999
Q ss_pred EEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcC
Q 011436 447 FGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 484 (485)
Q Consensus 447 fG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~~ 484 (485)
||||++|||||++|++++++.+++|.++|+|.+|+++.
T Consensus 170 FG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~ 207 (234)
T 2ose_A 170 IGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYL 207 (234)
T ss_dssp EEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECC
T ss_pred EEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEec
Confidence 99999999999999999999889999999999999875
No 35
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=100.00 E-value=1.3e-39 Score=329.37 Aligned_cols=154 Identities=48% Similarity=0.745 Sum_probs=146.8
Q ss_pred CCEEEEEeC-----CeEEEEEecCCCChHHHHHHHHhhhc--------C---ccCCceEEEEEeCcEEEecCCC-CCCCC
Q 011436 329 PDNVILHTT-----MGDIHMKLYPEECPKTVENFTTHCRN--------E---YYNNLIFHRVIKGFMIQTGDPL-GDGTG 391 (485)
Q Consensus 329 ~~~~~~~t~-----~G~i~i~L~~~~aP~~~~nF~~l~~~--------~---~y~g~~f~rv~~~~~iq~G~~~-~~~~~ 391 (485)
...|.|+|+ .|+|+|+||++.||+||+||+.||++ | ||+|+.||||+|+|||||||+. ++|+|
T Consensus 15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g 94 (370)
T 1ihg_A 15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG 94 (370)
T ss_dssp SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence 678999988 89999999999999999999999997 6 7999999999999999999997 88999
Q ss_pred CcccCCCccccccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCCCCcEEEEEEcCHHHHHHHhcCCCCCCCCc
Q 011436 392 GQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVIKGMDVVQAIEKVKTDKNDKP 471 (485)
Q Consensus 392 ~~~~~~~~~~~e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~~~~p 471 (485)
++++||..|++|. ..++|+++|+||||+.+|+++||||||++.++|+||++|+|||+|++||+||++|++++++. ++|
T Consensus 95 ~~~~~~~~~~~e~-~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P 172 (370)
T 1ihg_A 95 GESIYGEKFEDEN-FHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKP 172 (370)
T ss_dssp CCBTTBSCBCCCC-CCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEE
T ss_pred CCCCCCCCcCCCc-CCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Ccc
Confidence 9999999999997 68899999999999999999999999999999999999999999999999999999999877 999
Q ss_pred ccCeEEEEEEEcC
Q 011436 472 YQDVKILNVTVPK 484 (485)
Q Consensus 472 ~~~i~I~~~~v~~ 484 (485)
..+|+|.+|+++.
T Consensus 173 ~~~v~I~~~g~l~ 185 (370)
T 1ihg_A 173 AKLCVIAECGELK 185 (370)
T ss_dssp SSCEEEEEEEEEC
T ss_pred ceeEEEEEEEEec
Confidence 9999999999874
No 36
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=100.00 E-value=2.4e-36 Score=295.27 Aligned_cols=146 Identities=23% Similarity=0.333 Sum_probs=127.6
Q ss_pred CCCCEEEEEeC--------CeEEEEEecCCCChHHHHHHHHhhhcCccCCceEEEEEeCcEEEecCCCCCCCC-------
Q 011436 327 SLPDNVILHTT--------MGDIHMKLYPEECPKTVENFTTHCRNEYYNNLIFHRVIKGFMIQTGDPLGDGTG------- 391 (485)
Q Consensus 327 ~~~~~~~~~t~--------~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~------- 391 (485)
.....|.|+|+ .|+|+|+||++.||+||+||++||+.+||+|+.|||| ++|||||||+.+++.|
T Consensus 168 ~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~~~~g 246 (369)
T 3rfy_A 168 KGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTE 246 (369)
T ss_dssp CSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCSCCCC
T ss_pred CCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccCcccC
Confidence 34467888887 8999999999999999999999999999999999999 9999999999887766
Q ss_pred --------------CcccCCCcccccc----ccCCCCCCceEEEEccc--CCCCCCceEEEEc-------cCCCCCCCCC
Q 011436 392 --------------GQSIWGREFEDEF----HKSLRHDRPFTVSMANA--GPNTNGSQFFITT-------VATPWLDNKH 444 (485)
Q Consensus 392 --------------~~~~~~~~~~~e~----~~~~~~~~~g~v~~~~~--~~~~~~sqf~i~~-------~~~~~ld~~~ 444 (485)
+.++|+..|++|. .+.++|+.+|+||||+. +||+++|||||++ .+.++||++|
T Consensus 247 ~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgky 326 (369)
T 3rfy_A 247 KTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRY 326 (369)
T ss_dssp CCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCE
T ss_pred cCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCe
Confidence 4567777787763 35788999999999998 8999999999999 4689999999
Q ss_pred cEEEEEEcCHHHHHHHhcCCCCCCCCcccCeEEEEEEEcC
Q 011436 445 TVFGRVIKGMDVVQAIEKVKTDKNDKPYQDVKILNVTVPK 484 (485)
Q Consensus 445 ~vfG~V~~G~~vl~~i~~~~~~~~~~p~~~i~I~~~~v~~ 484 (485)
+|||+|++|||||++|++.. +|.+++|..
T Consensus 327 tVFG~VveGmdVVdkI~~GD-----------~I~sv~I~~ 355 (369)
T 3rfy_A 327 AVFGYVTDNEDFLADLKVGD-----------VIESIQVVS 355 (369)
T ss_dssp EEEEEEEESTTGGGGCCTTC-----------EEEEEEEEE
T ss_pred eEEEEEecCHHHHHHHhCCC-----------ceEEEEEec
Confidence 99999999999999998841 366666654
No 37
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=6.6e-29 Score=243.50 Aligned_cols=225 Identities=11% Similarity=0.125 Sum_probs=179.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|++|+|||+. ++.+++++.+|..+|.+++|+|++++|++++.|++|++||+.+
T Consensus 22 sp~~~~l~s~~~dg~v~lWd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~------------- 86 (304)
T 2ynn_A 22 HPTEPWVLTTLYSGRVELWNYE--TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT------------- 86 (304)
T ss_dssp CSSSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-------------
T ss_pred CCCCCEEEEEcCCCcEEEEECC--CCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-------------
Confidence 5678899999999999999997 7888999999999999999999999999999999999999987
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccchhHHHhhhcCCCc-c----------c
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSDAP-L----------Y 169 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~~~-~----------~ 169 (485)
+..+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .+.+.+.+|...+.++++++.. . .
T Consensus 87 -~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 87 -GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp -CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred -CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 4556668999999999999999999999999999999999988 4567788888777777777631 1 1
Q ss_pred ccccccccchhhhhHhhhccCCCCCceEEECC--CCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCC
Q 011436 170 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE--SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGD 246 (485)
Q Consensus 170 ~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~--~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~ 246 (485)
++++...+.. ...+.......+..+.|+| ++++|++++.++ |++||+.+++++.++.+|...+..+. |.
T Consensus 166 ~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~---~~-- 237 (304)
T 2ynn_A 166 KVWSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV---FH-- 237 (304)
T ss_dssp EEEETTCSSC---SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE---EC--
T ss_pred EEEECCCCCc---cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE---EC--
Confidence 1111110100 0011122234456778865 788999999998 99999999999999999985544332 32
Q ss_pred ccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 247 RSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
|+..+|+||+.|++|++|+.+..+
T Consensus 238 -----------------------p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 238 -----------------------PTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp -----------------------SSSSEEEEEETTSCEEEEETTTCC
T ss_pred -----------------------CCCCEEEEEcCCCeEEEEECCCCc
Confidence 677789999999999999876544
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.96 E-value=6.2e-28 Score=240.37 Aligned_cols=234 Identities=11% Similarity=0.096 Sum_probs=187.2
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCC---------
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP--------- 92 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~--------- 92 (485)
+|++.++++++.|++|+|||+. ++..++.+..|...|.+++|+|++++|++++.|+.|++||+.+.+..
T Consensus 64 s~d~~~l~s~s~Dg~v~iWd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~ 141 (340)
T 1got_B 64 GTDSRLLLSASQDGKLIIWDSY--TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETT--TCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC
T ss_pred CCCCCEEEEEeCCCcEEEEECC--CCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecC
Confidence 5678899999999999999997 77889999999999999999999999999999999999998764311
Q ss_pred ----------------------CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 011436 93 ----------------------ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 93 ----------------------~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~ 150 (485)
.....|++..+..+..+.+|...|.+++|+|++++|++|+.|++|++||+++++++.+
T Consensus 142 h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~ 221 (340)
T 1got_B 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221 (340)
T ss_dssp CSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred CCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE
Confidence 0122366677777888999999999999999999999999999999999999999999
Q ss_pred eccchhHHHhhhcCCCcccc----------cccccccchhhhhHhhhc-cCCCCCceEEECCCCCEEEEecCCC-eEEEE
Q 011436 151 YDESLEVAQDLQRSDAPLYR----------LEAIDFGRRMAVEKEIEK-TETAPPSNAIFDESSNFLIYATLLG-IKIVN 218 (485)
Q Consensus 151 ~~~~~~~i~~~~~~~~~~~~----------~~~~~~g~~~~~~~~i~~-~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d 218 (485)
+.+|...+..+++++..-+- +++...+..+. .+.. .....+.+++|+|+|++|++++.++ |++||
T Consensus 222 ~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM---TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE---EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence 98888777777777653221 11111111100 0111 1122467899999999999999998 99999
Q ss_pred cccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 011436 219 LHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 219 ~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
+.+++++.++.+|...+..+.+ . +|+.+|+||+.|++|++|+
T Consensus 299 ~~~~~~~~~~~~h~~~v~~~~~---s-------------------------~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALKADRAGVLAGHDNRVSCLGV---T-------------------------DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCEEEEEECCSSCEEEEEE---C-------------------------TTSSCEEEEETTSCEEEEC
T ss_pred cccCcEeeEeecCCCcEEEEEE---c-------------------------CCCCEEEEEcCCccEEecC
Confidence 9999999999999855553332 1 7888899999999999995
No 39
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=6.2e-28 Score=238.83 Aligned_cols=207 Identities=17% Similarity=0.196 Sum_probs=169.1
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc--------
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES-------- 94 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~-------- 94 (485)
+++.+++||+.|++|+|||+..+...+..++.+|...|.+++|+|++.+++|++.|++|++||+.+++....
T Consensus 46 ~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~ 125 (321)
T 3ow8_A 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDA 125 (321)
T ss_dssp ---CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCC
T ss_pred CCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccE
Confidence 356789999999999999997222234567889999999999999999999999999999999987653211
Q ss_pred --------------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 011436 95 --------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDES 154 (485)
Q Consensus 95 --------------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~ 154 (485)
...|++..+.....+..|...+.+++|+|||++||+++.|+.|++||++++++++++.++
T Consensus 126 ~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h 205 (321)
T 3ow8_A 126 WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205 (321)
T ss_dssp CCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc
Confidence 122555666677778888899999999999999999999999999999999998887542
Q ss_pred hhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCC
Q 011436 155 LEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVEN 233 (485)
Q Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~ 233 (485)
. ..+.+++|+|+|++|++++.++ |++||+.+++++.++.+|..
T Consensus 206 ~------------------------------------~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 206 A------------------------------------MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp S------------------------------------SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred C------------------------------------CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 1 2346899999999999999987 99999999999999998875
Q ss_pred ccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 234 NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 234 ~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.+..+. |. ||+.+|+||+.|++|++|+-+..+
T Consensus 250 ~v~~~~---~s-------------------------p~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 250 WVLNVA---FC-------------------------PDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp CEEEEE---EC-------------------------TTSSEEEEEETTSCEEEEETTTTE
T ss_pred ceEEEE---EC-------------------------CCCCEEEEEeCCCcEEEEeCCCCE
Confidence 444222 22 788889999999999999876443
No 40
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=2.9e-28 Score=249.40 Aligned_cols=224 Identities=13% Similarity=0.176 Sum_probs=179.7
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++|+.|++|+|||+. ++++++++.+|..+|.+++|+|++++|++|+.|++|++||+.++
T Consensus 117 ~p~~~~l~s~s~Dg~i~vwd~~--~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~------------ 182 (410)
T 1vyh_C 117 HPVFSVMVSASEDATIKVWDYE--TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF------------ 182 (410)
T ss_dssp CSSSSEEEEEESSSCEEEEETT--TCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS------------
T ss_pred cCCCCEEEEEeCCCeEEEEECC--CCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------------
Confidence 4577899999999999999997 78889999999999999999999999999999999999999773
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccc----------cc
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY----------RL 171 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~----------~~ 171 (485)
..+..+.+|...|.+++|+|+|++|++++.|++|++||++++++++++.+|...+..+.+++...+ .+
T Consensus 183 --~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v 260 (410)
T 1vyh_C 183 --ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260 (410)
T ss_dssp --CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred --ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEE
Confidence 445558899999999999999999999999999999999999999999887766665555544221 11
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCC--------------------CCEEEEecCCC-eEEEEcccCeEEEeecc
Q 011436 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDES--------------------SNFLIYATLLG-IKIVNLHTNKVSRILGK 230 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~--------------------g~~l~~~s~~~-i~v~d~~tg~~v~~~~~ 230 (485)
+....+... ..+ ......+.+++|+|+ |++|++++.++ |++||+.+++++.++.+
T Consensus 261 wd~~~~~~~---~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~ 336 (410)
T 1vyh_C 261 WVVATKECK---AEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 336 (410)
T ss_dssp EETTTCCEE---EEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCcee---eEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC
Confidence 111111100 011 123345678999986 78999999998 99999999999999998
Q ss_pred cCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 231 VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 231 ~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
|...++.+.+ . +++.+|+||+.|++|++|+.+..+
T Consensus 337 h~~~v~~v~~---~-------------------------~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 337 HDNWVRGVLF---H-------------------------SGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp CSSCEEEEEE---C-------------------------SSSSCEEEEETTTEEEEECCTTSC
T ss_pred CCCcEEEEEE---c-------------------------CCCCEEEEEeCCCeEEEEECCCCc
Confidence 8855553322 2 677889999999999999875443
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=1.9e-27 Score=233.02 Aligned_cols=230 Identities=13% Similarity=0.180 Sum_probs=182.2
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|+.|+|||+. +++....+.+|..+|.+++|+|++++|++++.|+.|++||+++
T Consensus 32 s~~~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~------------- 96 (312)
T 4ery_A 32 SPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS------------- 96 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETT--TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------------
T ss_pred CCCCCEEEEeeCCCeEEEEeCC--CcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC-------------
Confidence 5677889999999999999997 6788889999999999999999999999999999999999977
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc----------
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL---------- 171 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~---------- 171 (485)
+..+..+.+|...|.+++|+|++++|++++.|+.|++||++++++++.+..+...+..+.+++..-+-+
T Consensus 97 -~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 175 (312)
T 4ery_A 97 -GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175 (312)
T ss_dssp -CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 445566889999999999999999999999999999999999999999988777777676665422211
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCc
Q 011436 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSK 250 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~ 250 (485)
++...++.+ ..+.......+..++|+|+|++|++++.++ |++||+.++++++.+.+|..... .....|.
T Consensus 176 wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~------ 245 (312)
T 4ery_A 176 WDTASGQCL---KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFS------ 245 (312)
T ss_dssp EETTTCCEE---EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS-CCCEEEE------
T ss_pred EECCCCcee---eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE-EEEEEEE------
Confidence 111111110 112223345567899999999999999987 99999999999999988873322 2222221
Q ss_pred ceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011436 251 KVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
.+++.+|+||+.|+.|++|+-+..+..
T Consensus 246 ------------------~~~~~~l~sg~~dg~i~vwd~~~~~~~ 272 (312)
T 4ery_A 246 ------------------VTGGKWIVSGSEDNLVYIWNLQTKEIV 272 (312)
T ss_dssp ------------------CSSSCEEEECCTTSCEEEEETTTCCEE
T ss_pred ------------------eCCCcEEEEECCCCEEEEEECCCchhh
Confidence 156788999999999999988755433
No 42
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=235.89 Aligned_cols=188 Identities=13% Similarity=0.144 Sum_probs=164.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|++|++||++ +++....+..|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 131 spdg~~l~~g~~dg~v~i~~~~--~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~------------- 195 (321)
T 3ow8_A 131 SPDSQYLATGTHVGKVNIFGVE--SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT------------- 195 (321)
T ss_dssp CTTSSEEEEECTTSEEEEEETT--TCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------
T ss_pred CCCCCEEEEEcCCCcEEEEEcC--CCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-------------
Confidence 5678899999999999999997 6778888999999999999999999999999999999999987
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
+..+..+.+|...|.+++|+|||++|++++.|++|++||+++++++.++.+|.
T Consensus 196 -~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~-------------------------- 248 (321)
T 3ow8_A 196 -GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA-------------------------- 248 (321)
T ss_dssp -TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--------------------------
T ss_pred -CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--------------------------
Confidence 44556688999999999999999999999999999999999999888775422
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccc
Q 011436 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAA 260 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~ 260 (485)
..+.+++|+|+|++|++++.++ |++||+.++++++++.+|...+..+.+ .
T Consensus 249 ----------~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~---s---------------- 299 (321)
T 3ow8_A 249 ----------SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY---N---------------- 299 (321)
T ss_dssp ----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---C----------------
T ss_pred ----------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEE---C----------------
Confidence 1235899999999999999987 999999999999999888754443222 1
Q ss_pred ccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 261 NANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 261 ~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
+|+..|+|++.|++|++|+-
T Consensus 300 ---------~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 300 ---------GNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ---------TTSSEEEEEETTCCEEEEEC
T ss_pred ---------CCCCEEEEEeCCCeEEEEeC
Confidence 77888999999999999974
No 43
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.96 E-value=2e-27 Score=237.69 Aligned_cols=191 Identities=16% Similarity=0.169 Sum_probs=152.7
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEE----EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSNEPLIS----KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~----l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+++. +++++.||+|+|||+. +++++.. +.+|.+.|++|+|+|++++|+|++.|++|++||+++
T Consensus 92 ~d~~-l~~~s~dg~v~lWd~~--~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~---------- 158 (344)
T 4gqb_B 92 GERG-ILVASDSGAVELWELD--ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ---------- 158 (344)
T ss_dssp TTTE-EEEEETTSEEEEEEEC--TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------
T ss_pred CCCe-EEEEECCCEEEEEecc--CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC----------
Confidence 3444 5577789999999997 5554433 448999999999999999999999999999999987
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
+..+..+.+|...|.+++|+|++. +|++++.|++|++||+++++++..+..+
T Consensus 159 ----~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----------------------- 211 (344)
T 4gqb_B 159 ----QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS----------------------- 211 (344)
T ss_dssp ----TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------------------------
T ss_pred ----CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-----------------------
Confidence 455667999999999999999984 7899999999999999999987766321
Q ss_pred chhhhhHhhhccCCCCCceEEECCC-CCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeee
Q 011436 178 RRMAVEKEIEKTETAPPSNAIFDES-SNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKI 255 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~-g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~ 255 (485)
.....+.+++|+|+ +++|++|+.++ |++||+.++++++++.+|...++.+.+ .
T Consensus 212 -----------~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f---s----------- 266 (344)
T 4gqb_B 212 -----------APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF---S----------- 266 (344)
T ss_dssp -------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE---C-----------
T ss_pred -----------eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE---c-----------
Confidence 01122358899984 67889999887 999999999999999998865554433 2
Q ss_pred eccccccccCCCCCCCC-eEEEeeecCceEEEEecCCC
Q 011436 256 PAAAANANESKEPFSDP-TLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~d~-~l~~s~~~d~~i~~f~~~~~ 292 (485)
||+ .+|+||+.|++|+||+.+..
T Consensus 267 --------------p~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 267 --------------PHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp --------------SSSSCCEEEEETTSCEEEECTTCC
T ss_pred --------------cCCCeEEEEEeCCCeEEEEECCCC
Confidence 554 68999999999999976544
No 44
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=3.7e-28 Score=248.65 Aligned_cols=220 Identities=14% Similarity=0.184 Sum_probs=178.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++|+.|++|+|||+. +.++++++.+|...|.+++|+|++++|+|++.|++|++||+.+
T Consensus 159 ~~~~~~l~sgs~D~~i~iwd~~--~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~------------- 223 (410)
T 1vyh_C 159 DHSGKLLASCSADMTIKLWDFQ--GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT------------- 223 (410)
T ss_dssp CTTSSEEEEEETTSCCCEEETT--SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------------
T ss_pred cCCCCEEEEEeCCCeEEEEeCC--CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------------
Confidence 4577899999999999999997 7788999999999999999999999999999999999999987
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccc------------
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY------------ 169 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~------------ 169 (485)
+..+..+.+|...|.+++|+|+|++|++++.|++|++||+.++++...+.+|...+.++++++...+
T Consensus 224 -~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 1vyh_C 224 -GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302 (410)
T ss_dssp -CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred -CcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence 4456668899999999999999999999999999999999999999999888777777666653211
Q ss_pred ------------------ccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecc
Q 011436 170 ------------------RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 230 (485)
Q Consensus 170 ------------------~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~ 230 (485)
.+++...+..+ ..+. .....+.+++|+|+|++|++++.++ |++||+.++++++++.+
T Consensus 303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~~---~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~ 378 (410)
T 1vyh_C 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCL---MTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378 (410)
T ss_dssp -----CCEEEEEETTSEEEEEETTTTEEE---EEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred ccCCCCCEEEEEeCCCeEEEEECCCCceE---EEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence 11111111100 0111 2344567999999999999999998 99999999999999998
Q ss_pred cCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 231 VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 231 ~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
|...+..+.+ . |+..+|+||+.|++|++|..
T Consensus 379 h~~~v~~l~~---~-------------------------~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 379 HEHFVTSLDF---H-------------------------KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CSSCEEEEEE---C-------------------------SSSSCEEEEETTSEEEEEC-
T ss_pred CCCcEEEEEE---c-------------------------CCCCEEEEEeCCCcEEEEeC
Confidence 8854443322 1 67778999999999999974
No 45
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.95 E-value=1.3e-26 Score=232.47 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=161.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++++..+++++.|++|++||++ ++++++++.+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 163 ~~~~~~l~t~s~D~~v~lwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~----------- 229 (354)
T 2pbi_B 163 TNSDMQILTASGDGTCALWDVE--SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS----------- 229 (354)
T ss_dssp CSSSSEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-----------
T ss_pred eCCCCEEEEEeCCCcEEEEeCC--CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-----------
Confidence 4566778899999999999997 7889999999999999999988 468999999999999999987
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
+..+..+.+|...|.+++|+|+|.+||+++.|++|++||+++++.+..+..+.
T Consensus 230 ---~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~------------------------ 282 (354)
T 2pbi_B 230 ---GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES------------------------ 282 (354)
T ss_dssp ---CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT------------------------
T ss_pred ---CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC------------------------
Confidence 44556688999999999999999999999999999999999988776653200
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011436 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
....+.+++|+|+|++|++++.++ |++||+.+++++..+.+|...+..+.+ .
T Consensus 283 ----------~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~---s-------------- 335 (354)
T 2pbi_B 283 ----------IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV---S-------------- 335 (354)
T ss_dssp ----------CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE---C--------------
T ss_pred ----------cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEE---C--------------
Confidence 011235889999999999999987 999999999999999988855443332 1
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEe
Q 011436 259 AANANESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
||+.+|+||+.|++|++|+
T Consensus 336 -----------pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 -----------PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -----------TTSSCEEEEETTSEEEEEC
T ss_pred -----------CCCCEEEEEcCCCCEEecC
Confidence 7888999999999999994
No 46
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=4.3e-27 Score=235.36 Aligned_cols=188 Identities=13% Similarity=0.098 Sum_probs=152.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
+|++.++++++.|++|+|||++ ++++++++.+|...|.+++|+|++. +|+|++.|++|++||+++++.
T Consensus 136 spdg~~l~sgs~d~~i~iwd~~--~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--------- 204 (344)
T 4gqb_B 136 LSSGTQAVSGSKDICIKVWDLA--QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--------- 204 (344)
T ss_dssp CTTSSEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---------
T ss_pred CCCCCEEEEEeCCCeEEEEECC--CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce---------
Confidence 5688899999999999999997 7899999999999999999999985 789999999999999987543
Q ss_pred cCCCceEEe--ecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011436 101 KSDTNLFEI--LKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 101 ~~~~~l~~~--~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
+..+ ..+...+.+++|+| ++++||+|+.|++|+|||++++++++++.+|.
T Consensus 205 -----~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~---------------------- 257 (344)
T 4gqb_B 205 -----ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS---------------------- 257 (344)
T ss_dssp -----EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS----------------------
T ss_pred -----eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC----------------------
Confidence 2223 34556789999999 46789999999999999999999988875422
Q ss_pred chhhhhHhhhccCCCCCceEEECCCC-CEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeee
Q 011436 178 RRMAVEKEIEKTETAPPSNAIFDESS-NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKI 255 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g-~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~ 255 (485)
..+.+++|+|+| ++|++++.++ |++||+.++++++ +.+|...++.+.+ .
T Consensus 258 --------------~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H~~~V~~v~~---s----------- 308 (344)
T 4gqb_B 258 --------------QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAHRDFVRDATW---S----------- 308 (344)
T ss_dssp --------------SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCCSSCEEEEEE---C-----------
T ss_pred --------------CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCCCCCEEEEEE---e-----------
Confidence 134589999998 5899999987 9999999999875 4667655554333 2
Q ss_pred eccccccccCCCCCCC-CeEEEeeecCceEEEEecC
Q 011436 256 PAAAANANESKEPFSD-PTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~d-~~l~~s~~~d~~i~~f~~~ 290 (485)
|| ..+|+|++.|++|++|.-.
T Consensus 309 --------------p~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 309 --------------PLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp --------------SSSTTEEEEEETTSCEEEEECC
T ss_pred --------------CCCCeEEEEEcCCCeEEEEECC
Confidence 33 5688999999999999764
No 47
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.95 E-value=1.3e-26 Score=235.69 Aligned_cols=221 Identities=10% Similarity=0.132 Sum_probs=163.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc-------
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES------- 94 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~------- 94 (485)
+|++.++++++.|++|+|||+. +++++..+.+|...|.+++|+|++++|++++.|++|++||+++++....
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v 209 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIE--NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV 209 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred CCCCCEEEEEcCCCeEEEEECC--CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCc
Confidence 5688899999999999999997 7788899999999999999999999999999999999999987653210
Q ss_pred ---------------------eeEEEEcCCCceEEe-------ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011436 95 ---------------------EVSFRLKSDTNLFEI-------LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 95 ---------------------~~~~~~~~~~~l~~~-------~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~ 146 (485)
...|+...+..+..+ .+|...|.+++|+|+|++|++++.|++|++||+++++
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 122554544444444 5788999999999999999999999999999998765
Q ss_pred EEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEE
Q 011436 147 LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVS 225 (485)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v 225 (485)
......... .... ...+ ......+.+++|+|+|++|++++.++ |++||..+++++
T Consensus 290 ~~~~~~~~~--------~~~~---------------~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 290 NKSDSKTPN--------SGTC---------------EVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp -------------------CE---------------EEEE-ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred CcccccCCC--------CCcc---------------eEEE-ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 422110000 0000 0000 01223456899999999999999988 999999999999
Q ss_pred EeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 226 RILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 226 ~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.++.+|...+..+.++ .+. ...|+..+|+||+.|++|++|.-+
T Consensus 346 ~~l~~h~~~v~~v~~~--~~~--------------------~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 346 LMLQGHRNSVISVAVA--NGS--------------------SLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEECCSSCEEEEEEC--SSC--------------------TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEECCCCCCEEEEEec--CCc--------------------CcCCCCCEEEEECCCCcEEECccc
Confidence 9999998655533332 110 012788999999999999999764
No 48
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=229.57 Aligned_cols=194 Identities=13% Similarity=0.142 Sum_probs=155.4
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcc--eEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011436 21 GDVKAGLAISDRNSSFVHIYDARADSNEP--LISK-KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~--~~~l-~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
.+|++.++++++.|++|+|||+. .+.. ...+ .+|...|.+++|+|++++|++++.|++|++||..+..
T Consensus 24 ~sp~g~~las~~~D~~i~iw~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~------- 94 (345)
T 3fm0_A 24 WNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD------- 94 (345)
T ss_dssp ECTTSSCEEEEETTSCEEEEEEE--TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--------
T ss_pred ECCCCCEEEEEcCCCeEEEEEcC--CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-------
Confidence 35788899999999999999997 4432 2233 5899999999999999999999999999999876522
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEeccchhHHHhhhcCCCcccccccc
Q 011436 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL---RRVYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
...+..+.+|...|.+++|+|+|++||+++.|++|++||+.+++. +..+..
T Consensus 95 -----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------------------- 148 (345)
T 3fm0_A 95 -----FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS--------------------- 148 (345)
T ss_dssp -----EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC---------------------
T ss_pred -----eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC---------------------
Confidence 123556889999999999999999999999999999999987643 333322
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCe--EEEeecccCCccceeeeeeccCCccCcc
Q 011436 175 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNK--VSRILGKVENNDRFLRIALYQGDRSSKK 251 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~--~v~~~~~~~~~~r~~~~s~~~~~~~~~~ 251 (485)
....+.+++|+|+|++|++++.++ |++||..+++ ++.++.+|...+..+.+
T Consensus 149 ---------------h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~----------- 202 (345)
T 3fm0_A 149 ---------------HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF----------- 202 (345)
T ss_dssp ---------------CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE-----------
T ss_pred ---------------cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEE-----------
Confidence 112346899999999999999987 9999999886 45778888755443322
Q ss_pred eeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011436 252 VRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
.||+.+|+||+.|++|++|....+
T Consensus 203 -----------------sp~g~~l~s~s~D~~v~iW~~~~~ 226 (345)
T 3fm0_A 203 -----------------DPSGQRLASCSDDRTVRIWRQYLP 226 (345)
T ss_dssp -----------------CTTSSEEEEEETTSCEEEEEEECT
T ss_pred -----------------CCCCCEEEEEeCCCeEEEeccccC
Confidence 178889999999999999986543
No 49
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=9.9e-26 Score=222.50 Aligned_cols=214 Identities=14% Similarity=0.134 Sum_probs=165.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
++++.++++++.|++|+|||+. ++++++++.+|..+|.+++|+|++.+|+|++.|++|++||++
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-------------- 137 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVA--TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-------------- 137 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT--------------
T ss_pred CCCCCEEEEEeCCCEEEEEECC--CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--------------
Confidence 5678899999999999999997 788899999999999999999999999999999999999985
Q ss_pred CCCceEEeecCCccEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccc
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPD------GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spd------g~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
+..+..+.+|...|.+++|+|. +..|++++.|+.|++||+.++++...+.+|.
T Consensus 138 -~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-------------------- 196 (319)
T 3frx_A 138 -GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN-------------------- 196 (319)
T ss_dssp -SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC--------------------
T ss_pred -CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC--------------------
Confidence 3455668899999999999994 5589999999999999999998877764321
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCC---ccCcc
Q 011436 176 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGD---RSSKK 251 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~---~~~~~ 251 (485)
..+.+++|+|+|++|++++.++ |++||+.++++++++..+. .+..+.++--+.. ....+
T Consensus 197 ----------------~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~ 259 (319)
T 3frx_A 197 ----------------SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAAATATG 259 (319)
T ss_dssp ----------------SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-CEEEEEECSSSSEEEEEETTE
T ss_pred ----------------CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-cEEEEEEcCCCCEEEEEcCCC
Confidence 2346899999999999999987 9999999999999998765 4444433210000 00000
Q ss_pred eeee---------ecc--------cccc--ccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 252 VRKI---------PAA--------AANA--NESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 252 ~~~~---------~~~--------~~~~--~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+... .+. .+.. ....+ .||+.+|+||+.|++|++|+-.
T Consensus 260 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW-SADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE-CTTSSEEEEEETTSCEEEEEEE
T ss_pred cEEEEeCcCeeeeccCccccccccCcCcceeEEEE-CCCCCEEEEeecCceEEEEEEe
Confidence 0000 000 0000 11222 3899999999999999999753
No 50
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-25 Score=223.27 Aligned_cols=194 Identities=12% Similarity=0.143 Sum_probs=147.5
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcceEEE-ec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011436 27 LAISDRNSSFVHIYDARADSNEPLISK-KV-HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~~~~~~~~l-~~-h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
++++++.|++|+|||++.+....+..+ .+ |..+|.+|+|+|++++|++++.|++|++||.+...... ....
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~-------~~~~ 98 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT-------FEMD 98 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--------------CCCE
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc-------ccce
Confidence 888999999999999973223556667 44 99999999999999999999999999999985421100 0023
Q ss_pred ceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C---cEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 105 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT-G---KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t-g---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
.+..+.+|...|.+++|+|+|++||+++.|++|++||+.+ + +++.++.+|
T Consensus 99 ~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h-------------------------- 152 (330)
T 2hes_X 99 LLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH-------------------------- 152 (330)
T ss_dssp EEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC--------------------------
T ss_pred eEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC--------------------------
Confidence 4556889999999999999999999999999999999943 2 455555332
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccC--eEEEeecccCCccceeeeeeccCCccCcceeeeec
Q 011436 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN--KVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg--~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
...+.+++|+|+|++|++++.++ |++||..++ +++.++.+|...+..+.+ .
T Consensus 153 ----------~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~---~------------- 206 (330)
T 2hes_X 153 ----------SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF---D------------- 206 (330)
T ss_dssp ----------SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE---C-------------
T ss_pred ----------CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEe---c-------------
Confidence 12346899999999999999987 999999877 788999988855553332 1
Q ss_pred cccccccCCCCCCC--CeEEEeeecCceEEEEecCC
Q 011436 258 AAANANESKEPFSD--PTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 258 ~~~~~~~~~~~~~d--~~l~~s~~~d~~i~~f~~~~ 291 (485)
++ ..+|+||+.|++|++|+.+.
T Consensus 207 ------------~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 207 ------------KTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp ------------CSSSSCEEEEEETTSCEEEEEEEE
T ss_pred ------------CCCCeeEEEEEeCCCeEEEEEecC
Confidence 33 56789999999999998653
No 51
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=7.6e-26 Score=228.86 Aligned_cols=194 Identities=17% Similarity=0.224 Sum_probs=159.1
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEE-----ecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISK-----KVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l-----~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+..+++++.|++|++||++ +++++..+ .+|...|.+++|+| ++++|+|++.|++|++||++..
T Consensus 170 ~~~l~s~s~D~~i~~wd~~--~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~--------- 238 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVT--TGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT--------- 238 (380)
T ss_dssp SSCEEEECTTSCEEEECTT--TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT---------
T ss_pred CCEEEEECCCCcEEEEEcC--CCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC---------
Confidence 4568899999999999997 77777777 58999999999987 8899999999999999998632
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
...+..+.+|...|.+++|+|+|++|++++.|++|++||+++++++..+..+...
T Consensus 239 ----~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~--------------------- 293 (380)
T 3iz6_a 239 ----SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR--------------------- 293 (380)
T ss_dssp ----CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS---------------------
T ss_pred ----CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc---------------------
Confidence 3445568899999999999999999999999999999999999998887431100
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEee----cccCCccceeeeeeccCCccCccee
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL----GKVENNDRFLRIALYQGDRSSKKVR 253 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~----~~~~~~~r~~~~s~~~~~~~~~~~~ 253 (485)
.......+.+++|+|+|++|++++.++ |++||+.+++++..+ .+|+..+..+.+
T Consensus 294 --------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~------------- 352 (380)
T 3iz6_a 294 --------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL------------- 352 (380)
T ss_dssp --------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE-------------
T ss_pred --------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE-------------
Confidence 001122357999999999999999987 999999999998877 456544443322
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 254 KIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.||+.+|+||+.|++|++|.-.
T Consensus 353 ---------------s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 353 ---------------SSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp ---------------CSSSSEEEEECTTSCEEEEECC
T ss_pred ---------------CCCCCEEEEeeCCCCEEEEecC
Confidence 1788899999999999999764
No 52
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.95 E-value=1.4e-25 Score=219.10 Aligned_cols=194 Identities=12% Similarity=0.196 Sum_probs=155.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++++.++++++.|++|+|||+.....+++.++.+|.++|.+++|+|+ +++|+|++.|++|++||+++++.
T Consensus 18 s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~-------- 89 (297)
T 2pm7_B 18 DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW-------- 89 (297)
T ss_dssp CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB--------
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce--------
Confidence 56788999999999999999963345778999999999999999864 89999999999999999876431
Q ss_pred EcCCCceEEeecCCccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcE--EEEeccchhHHHhhhcCCCccccccccc
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPD--GKQFSITSPDRRIRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spd--g~~lat~s~D~~I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
..+..+.+|...|.+++|+|+ |.+||+++.|++|++||++++.. ...+.+|
T Consensus 90 ----~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h--------------------- 144 (297)
T 2pm7_B 90 ----SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH--------------------- 144 (297)
T ss_dssp ----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC---------------------
T ss_pred ----EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc---------------------
Confidence 234457789999999999998 89999999999999999987642 1222221
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCC-------------CCEEEEecCCC-eEEEEcccCe----EEEeecccCCccce
Q 011436 176 FGRRMAVEKEIEKTETAPPSNAIFDES-------------SNFLIYATLLG-IKIVNLHTNK----VSRILGKVENNDRF 237 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~-------------g~~l~~~s~~~-i~v~d~~tg~----~v~~~~~~~~~~r~ 237 (485)
...+.+++|+|+ +++|++++.++ |++||+.+++ ++.++.+|...++.
T Consensus 145 ---------------~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 145 ---------------AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (297)
T ss_dssp ---------------SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred ---------------cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence 123356777775 68999999987 9999998876 67788888865554
Q ss_pred eeeeeccCCccCcceeeeeccccccccCCCCCCC---CeEEEeeecCceEEEEecCC
Q 011436 238 LRIALYQGDRSSKKVRKIPAAAANANESKEPFSD---PTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~l~~s~~~d~~i~~f~~~~ 291 (485)
+.++ |+ +.+|+||+.|++|++|+.+.
T Consensus 210 v~~s----------------------------p~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 210 VAWS----------------------------PTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EEEC----------------------------CCCSSSEEEEEEETTSCEEEEEESS
T ss_pred EEEC----------------------------CCCCCceEEEEEECCCcEEEEEeCC
Confidence 4441 33 57899999999999998754
No 53
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=1.5e-25 Score=221.26 Aligned_cols=191 Identities=18% Similarity=0.142 Sum_probs=156.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC---CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADS---NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~---~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.+.+++|++.|++|++||+.... +.+++++.+|...|.+++|+|++++|+|++.|++|++||+++
T Consensus 29 ~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~------------ 96 (319)
T 3frx_A 29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT------------ 96 (319)
T ss_dssp CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT------------
T ss_pred CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC------------
Confidence 34789999999999999985211 345788999999999999999999999999999999999987
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
+..+..+.+|...|.+++|+|++++|++++.|++|++||++ ++++.++.+|...
T Consensus 97 --~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~----------------------- 150 (319)
T 3frx_A 97 --GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDW----------------------- 150 (319)
T ss_dssp --TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSC-----------------------
T ss_pred --CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCc-----------------------
Confidence 44556689999999999999999999999999999999996 5666666443222
Q ss_pred hhhHhhhccCCCCCceEEECC------CCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCccee
Q 011436 181 AVEKEIEKTETAPPSNAIFDE------SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVR 253 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~------~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~ 253 (485)
+.++.|.| ++.+|++++.++ |++||+.++++...+.+|...+..+.+
T Consensus 151 -------------v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~------------- 204 (319)
T 3frx_A 151 -------------VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTA------------- 204 (319)
T ss_dssp -------------EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEE-------------
T ss_pred -------------EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEE-------------
Confidence 23556666 556899999987 999999999999999888755543322
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 254 KIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.||+.+|+||+.|++|++|+-+..+
T Consensus 205 ---------------sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 205 ---------------SPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp ---------------CTTSSEEEEEETTCEEEEEETTTTE
T ss_pred ---------------cCCCCEEEEEeCCCeEEEEECCCCc
Confidence 1788999999999999999876543
No 54
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.94 E-value=2.2e-25 Score=222.14 Aligned_cols=190 Identities=15% Similarity=0.173 Sum_probs=152.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC-----CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADS-----NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~-----~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
++.++++|+.|++|+|||+.... +.+...+.+|..+|.+++|+|++.+++|++.|++|++||+++
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~---------- 107 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRT---------- 107 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTS----------
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC----------
Confidence 78899999999999999986221 245678899999999999999999999999999999999987
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
++.+..+.+|...|.+++|+|+|++|++++.|++|++||+.. ++...+...
T Consensus 108 ----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~------------------------ 158 (343)
T 2xzm_R 108 ----GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEK------------------------ 158 (343)
T ss_dssp ----SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTT------------------------
T ss_pred ----CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cceeeeecc------------------------
Confidence 445566889999999999999999999999999999999973 433332110
Q ss_pred hhhhhHhhhccCCCCCceEEECCCC----------CEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCc
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESS----------NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDR 247 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g----------~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~ 247 (485)
......+.+++|+|++ ++|++++.++ |++|| .++++..++.+|...+..+.+
T Consensus 159 ---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~------- 221 (343)
T 2xzm_R 159 ---------ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSI------- 221 (343)
T ss_dssp ---------TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEE-------
T ss_pred ---------cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEE-------
Confidence 0111234577888876 7999999988 99999 567777888888754443322
Q ss_pred cCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 248 SSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.||+.+|+||+.|++|++|+-+
T Consensus 222 ---------------------s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 222 ---------------------SPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp ---------------------CTTSSEEEEEETTCEEEEEESS
T ss_pred ---------------------CCCCCEEEEEcCCCeEEEEECC
Confidence 1788899999999999999864
No 55
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.94 E-value=5.3e-26 Score=228.30 Aligned_cols=192 Identities=14% Similarity=0.122 Sum_probs=157.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
+|++.++++++.|++|+|||++ +++++..+.+|...|++++|+|+++ ++++++.|+.|++||+++++....
T Consensus 148 spdg~~l~sgs~dg~v~iwd~~--~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~------ 219 (357)
T 4g56_B 148 FSDGTQAVSGGKDFSVKVWDLS--QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR------ 219 (357)
T ss_dssp CSSSSEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB------
T ss_pred CCCCCEEEEEeCCCeEEEEECC--CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee------
Confidence 5678899999999999999997 7889999999999999999999985 789999999999999987554332
Q ss_pred cCCCceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
..+..+...+.+++|+|+ +.+||+|+.|+.|++||++++++++++..+.
T Consensus 220 ------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~------------------------ 269 (357)
T 4g56_B 220 ------IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS------------------------ 269 (357)
T ss_dssp ------CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS------------------------
T ss_pred ------eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc------------------------
Confidence 123456678999999997 5789999999999999999999877774321
Q ss_pred hhhhHhhhccCCCCCceEEECCCC-CEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeec
Q 011436 180 MAVEKEIEKTETAPPSNAIFDESS-NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g-~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
..+.+++|+|+| ++|++++.++ |+|||+.++++++.++ |...++.+.+ .
T Consensus 270 ------------~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~-H~~~V~~vaf---s------------- 320 (357)
T 4g56_B 270 ------------QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAW---S------------- 320 (357)
T ss_dssp ------------SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC-CSSCEEEEEE---C-------------
T ss_pred ------------eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC-CCCCEEEEEE---e-------------
Confidence 234589999987 5899999887 9999999999998874 5545553333 2
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 258 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 258 ~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
+.|+.+|+|++.|++|++|+-..
T Consensus 321 -----------P~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 321 -----------PLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp -----------SSSTTEEEEEETTSCEEEEECC-
T ss_pred -----------CCCCCEEEEEcCCCeEEEEECCC
Confidence 13778899999999999998654
No 56
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.94 E-value=5.7e-25 Score=220.44 Aligned_cols=197 Identities=9% Similarity=0.030 Sum_probs=163.7
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.+++|++.|++|+|||.. +....+.+..|...|.+++|+|++..+++++.|+.+++|++........
T Consensus 73 s~d~~~l~s~s~Dg~v~vWd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~------- 143 (354)
T 2pbi_B 73 CKDKRRIVSSSQDGKVIVWDSF--TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM------- 143 (354)
T ss_dssp CTTSSEEEEEETTSEEEEEETT--TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS-------
T ss_pred CCCCCEEEEEeCCCeEEEEECC--CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc-------
Confidence 4677899999999999999987 6778889999999999999999999999999999999998754321111
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
......+..|...|.+++|+|++..|++++.|++|++||++++++++++.+|..
T Consensus 144 -~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~------------------------- 197 (354)
T 2pbi_B 144 -AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA------------------------- 197 (354)
T ss_dssp -GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-------------------------
T ss_pred -cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC-------------------------
Confidence 233455778999999999999999999999999999999999999988854221
Q ss_pred hhHhhhccCCCCCceEEECC--CCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011436 182 VEKEIEKTETAPPSNAIFDE--SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~--~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
.+.+++|+| +|++|++++.++ |++||+.++++++++.+|+..+..+.+ .
T Consensus 198 -----------~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~---~-------------- 249 (354)
T 2pbi_B 198 -----------DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY---Y-------------- 249 (354)
T ss_dssp -----------CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE---C--------------
T ss_pred -----------CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEE---e--------------
Confidence 224667765 689999999987 999999999999999988855543322 1
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011436 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
|++.+|+||+.|++|++|+-+..
T Consensus 250 -----------p~~~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 250 -----------PSGDAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp -----------TTSSEEEEEETTSCEEEEETTTT
T ss_pred -----------CCCCEEEEEeCCCeEEEEECCCC
Confidence 67788999999999999987643
No 57
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.94 E-value=9.4e-26 Score=222.35 Aligned_cols=198 Identities=14% Similarity=0.145 Sum_probs=151.7
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++++.++++++.|++|+|||++.+...++.++.+|..+|.+|+|+| ++++|+|++.|++|++||+++++.
T Consensus 22 s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-------- 93 (316)
T 3bg1_A 22 DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-------- 93 (316)
T ss_dssp CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC--------
T ss_pred cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc--------
Confidence 4678899999999999999997222235788999999999999986 489999999999999999976421
Q ss_pred EcCCCceEEeecCCccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEE---EeccchhHHHhhhcCCCcccccccc
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPD--GKQFSITSPDRRIRVFWFRTGKLRR---VYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spd--g~~lat~s~D~~I~iwd~~tg~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
..+..+.+|...|.+++|+|+ |.+||+++.|++|++||++++.... .+..|
T Consensus 94 ----~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h-------------------- 149 (316)
T 3bg1_A 94 ----EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH-------------------- 149 (316)
T ss_dssp ----CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS--------------------
T ss_pred ----eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc--------------------
Confidence 234557889999999999998 8899999999999999998764221 11111
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCC-----------------CCEEEEecCCC-eEEEEcccC---eEEEeecccCC
Q 011436 175 DFGRRMAVEKEIEKTETAPPSNAIFDES-----------------SNFLIYATLLG-IKIVNLHTN---KVSRILGKVEN 233 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~-----------------g~~l~~~s~~~-i~v~d~~tg---~~v~~~~~~~~ 233 (485)
...+.+++|+|+ +++|++++.++ |++||+.++ ++++++.+|..
T Consensus 150 ----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~ 213 (316)
T 3bg1_A 150 ----------------TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD 213 (316)
T ss_dssp ----------------SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS
T ss_pred ----------------cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC
Confidence 112345666665 57999999987 999999765 57788888876
Q ss_pred ccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 234 NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 234 ~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.++.+.++--++ .+..+|+||+.|++|++|+.+.
T Consensus 214 ~V~~v~~sp~~~------------------------~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 214 WVRDVAWAPSIG------------------------LPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CEEEEECCCCSS------------------------CSCCEEEEEETTCEEEEEECSS
T ss_pred ceEEEEecCCCC------------------------CCCceEEEEcCCCeEEEEEccC
Confidence 556444422110 2347899999999999998654
No 58
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.94 E-value=9.3e-26 Score=225.19 Aligned_cols=233 Identities=10% Similarity=0.049 Sum_probs=155.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|++|+|||+..+..+++.++.+|..+|.+++|+|++++|++++.|++|++||+.+...
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~---------- 139 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE---------- 139 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC----------
T ss_pred CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC----------
Confidence 5678899999999999999997333356788999999999999999999999999999999999865321
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEeccchhHHHhhhcCCCcccccccccccch
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK--LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
...+..+.+|...|.+++|+|++++||+++.|++|++||..+++ +..++.+|...+..+++++..-+-+.....+.-
T Consensus 140 -~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v 218 (345)
T 3fm0_A 140 -YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218 (345)
T ss_dssp -EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred -eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeE
Confidence 12344577899999999999999999999999999999998886 446676666555555555442111111000000
Q ss_pred hhhh----------------------HhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeE---------EEe
Q 011436 180 MAVE----------------------KEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKV---------SRI 227 (485)
Q Consensus 180 ~~~~----------------------~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~---------v~~ 227 (485)
.... ..+.......+.+++|+|++.+|++++.++ |++|+..++.. .+.
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeee
Confidence 0000 000001223445667777777777776665 67777654321 111
Q ss_pred ecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCC-CeEEEeeecCceEEEEecCCCC
Q 011436 228 LGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSD-PTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 228 ~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
..+|...+. . ..+. |+ +.+||||+.|++|++|..+.++
T Consensus 299 ~~~h~~~V~-----------------~----------v~~~-p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 299 HQAHSQDVN-----------------C----------VAWN-PKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TTSSSSCEE-----------------E----------EEEC-SSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccccCcEe-----------------E----------eEEe-CCCceEEEEcCCCCcEEEEEecCCC
Confidence 122222222 1 1222 44 4689999999999999887544
No 59
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.1e-25 Score=220.04 Aligned_cols=194 Identities=11% Similarity=0.047 Sum_probs=145.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCC-----CCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCcee
Q 011436 22 DVKAGLAISDRNSSFVHIYDARAD-----SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~-----~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~ 96 (485)
+|++.++++++.|++|+|||+... ..+++.++.+|..+|.+++|+|++++|+|++.|++|++||+......
T Consensus 67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~---- 142 (330)
T 2hes_X 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE---- 142 (330)
T ss_dssp CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC----
T ss_pred CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC----
Confidence 567789999999999999998421 23567788999999999999999999999999999999998432100
Q ss_pred EEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--cEEEEeccchhHHHhhhcCCCcccccccc
Q 011436 97 SFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG--KLRRVYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
...+..+.+|...|.+++|+|++++|++++.|++|++||..++ +++.++.+|.
T Consensus 143 ------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~------------------- 197 (330)
T 2hes_X 143 ------YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE------------------- 197 (330)
T ss_dssp ------CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS-------------------
T ss_pred ------eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC-------------------
Confidence 1235568899999999999999999999999999999998876 5666664422
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCC--CCEEEEecCCC-eEEEEcccC--------eEEEeecc-cCCccceeeeee
Q 011436 175 DFGRRMAVEKEIEKTETAPPSNAIFDES--SNFLIYATLLG-IKIVNLHTN--------KVSRILGK-VENNDRFLRIAL 242 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~--g~~l~~~s~~~-i~v~d~~tg--------~~v~~~~~-~~~~~r~~~~s~ 242 (485)
..+.+++|+|+ +.+|++++.++ |++||+.++ +++..+.+ |...+..+.++
T Consensus 198 -----------------~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s- 259 (330)
T 2hes_X 198 -----------------GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG- 259 (330)
T ss_dssp -----------------SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-
T ss_pred -----------------CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-
Confidence 23458899999 78999999987 999999765 34444433 43233322221
Q ss_pred ccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 243 YQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+++ +|+|++.|++|++|+.+
T Consensus 260 ---------------------------~~~-~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 260 ---------------------------FNG-LIASVGADGVLAVYEEV 279 (330)
T ss_dssp ---------------------------TTS-CEEEEETTSCEEEEEEE
T ss_pred ---------------------------CCC-EEEEEeCCCEEEEEEcC
Confidence 233 68999999999999865
No 60
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=5.2e-25 Score=223.76 Aligned_cols=226 Identities=11% Similarity=0.160 Sum_probs=157.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCC------------------CeEEEEEcCCCCEEEEEeCCCcEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG------------------PVKVMRYNPVFDTVISADDKGIIEY 83 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~------------------~V~~l~fspd~~~l~s~s~dg~i~~ 83 (485)
+|++.++++++ +++++||++. +++.+..+..|.. .|.+++|+|++++|++++.|+.|++
T Consensus 73 spdg~~la~g~-~~~v~i~~~~--~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~i 149 (393)
T 1erj_A 73 SNDGEYLATGC-NKTTQVYRVS--DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRI 149 (393)
T ss_dssp CTTSSEEEEEC-BSCEEEEETT--TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCCCEEEEEc-CCcEEEEEec--CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEE
Confidence 56788888886 6899999997 6777777766542 4999999999999999999999999
Q ss_pred EcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhc
Q 011436 84 WSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQR 163 (485)
Q Consensus 84 Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~ 163 (485)
||+++ +..+..+.+|...|.+++|+|+|++|++++.|++|++||++++++..++..+. .+..+++
T Consensus 150 wd~~~--------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-~v~~~~~ 214 (393)
T 1erj_A 150 WDIEN--------------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED-GVTTVAV 214 (393)
T ss_dssp EETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS-CEEEEEE
T ss_pred EECCC--------------CcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC-CcEEEEE
Confidence 99977 34455688999999999999999999999999999999999999887774321 1222333
Q ss_pred CC-C----------cccccccccccchh---hhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCe-----
Q 011436 164 SD-A----------PLYRLEAIDFGRRM---AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNK----- 223 (485)
Q Consensus 164 ~~-~----------~~~~~~~~~~g~~~---~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~----- 223 (485)
++ . ...++++...+..+ ..+..........+.+++|+|+|++|++++.++ |++||+.+++
T Consensus 215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence 32 1 11122222111111 001111122345678999999999999999987 9999997643
Q ss_pred -------EEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 224 -------VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 224 -------~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+..++.+|...+. .+.. .+++.+|+||+.|++|++|+.+..+
T Consensus 295 ~~~~~~~~~~~~~~h~~~v~-----------------~~~~-----------~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDFVL-----------------SVAT-----------TQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp ------CEEEEEECCSSCEE-----------------EEEE-----------CGGGCEEEEEETTSEEEEEETTTCC
T ss_pred cCCCCCcceEEEecccCcEE-----------------EEEE-----------CCCCCEEEEEeCCCeEEEEECCCCe
Confidence 3334444432111 1111 1677889999999999999876544
No 61
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.94 E-value=3.6e-25 Score=238.11 Aligned_cols=204 Identities=13% Similarity=0.080 Sum_probs=163.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc-------
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES------- 94 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~------- 94 (485)
+|++.++++++ +++|+|||+. ++....++.+|...|++++|+|||++|||++.|++|++||+.+++....
T Consensus 27 spdg~~l~~~~-~~~v~l~~~~--~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~ 103 (611)
T 1nr0_A 27 TPAGDKIQYCN-GTSVYTVPVG--SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS 103 (611)
T ss_dssp CTTSSEEEEEE-TTEEEEEETT--CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS
T ss_pred CCCCCEEEeCC-CCEEEEecCC--CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccC
Confidence 67888888886 5799999997 6778899999999999999999999999999999999999865432100
Q ss_pred ----eeE---------------------EEEcCCCceEEeecCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEE
Q 011436 95 ----EVS---------------------FRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLR 148 (485)
Q Consensus 95 ----~~~---------------------~~~~~~~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~~~ 148 (485)
.+. +.+..++.+..+.+|...|.+++|+|++. .|++++.|++|++||..+++++
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~ 183 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK 183 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe
Confidence 011 12223344556788999999999999987 6999999999999999999988
Q ss_pred EEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEe
Q 011436 149 RVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRI 227 (485)
Q Consensus 149 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~ 227 (485)
+++.+|.. .+.+++|+|+|++|++++.++ |++||+.+++++++
T Consensus 184 ~~l~~H~~------------------------------------~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 184 STFGEHTK------------------------------------FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp EEECCCSS------------------------------------CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred eeeccccC------------------------------------ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence 88755322 345899999999999999987 99999999999988
Q ss_pred ec-------ccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011436 228 LG-------KVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 228 ~~-------~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
+. +|...+..+.+ .||+.+|+||+.|++|++|+.+..
T Consensus 228 ~~~~~~~~~~h~~~V~~v~~----------------------------spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 228 FEDDSLKNVAHSGSVFGLTW----------------------------SPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp CBCTTSSSCSSSSCEEEEEE----------------------------CTTSSEEEEEETTSEEEEEETTTT
T ss_pred eccccccccccCCCEEEEEE----------------------------CCCCCEEEEEeCCCeEEEEeCCCC
Confidence 84 45433332221 178899999999999999987644
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.94 E-value=2.5e-25 Score=226.50 Aligned_cols=224 Identities=14% Similarity=0.162 Sum_probs=168.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
++++.++++++.|+.|+|||+. ++++...+.+|..+|++++|+|++++|++++.|+.|++||+.+++
T Consensus 106 ~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~----------- 172 (420)
T 3vl1_A 106 KLQMRRFILGTTEGDIKVLDSN--FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS----------- 172 (420)
T ss_dssp CSSSCEEEEEETTSCEEEECTT--SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------
T ss_pred ecCCCEEEEEECCCCEEEEeCC--CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------
Confidence 4577788999999999999997 677778778999999999999999999999999999999998743
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccch------------------------hH
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESL------------------------EV 157 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~------------------------~~ 157 (485)
.+..+.+|...|.+++|+|+|++|++++.|++|++||++++++++.+..+. ..
T Consensus 173 ---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 173 ---NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp ---CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred ---CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 445588999999999999999999999999999999999999999986432 12
Q ss_pred HHhhhcCCCccc----------ccccccccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEcccCeE-
Q 011436 158 AQDLQRSDAPLY----------RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTNKV- 224 (485)
Q Consensus 158 i~~~~~~~~~~~----------~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~tg~~- 224 (485)
+..+++++..-+ .+++...++.. ..+.......+.+++|+|+|+ +|++++.++ |++||+.+++.
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 326 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT---IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP 326 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE---EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCcee---EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc
Confidence 222333333111 11111111100 111122345678999999999 999999987 99999998754
Q ss_pred EEeeccc-CCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 225 SRILGKV-ENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 225 v~~~~~~-~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+..+.+| ...+. +++. +++.+|+|++.|++|++|+-+.++
T Consensus 327 ~~~~~~~~~~~v~----~~~~-------------------------~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 327 VGEFLINEGTPIN----NVYF-------------------------AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp SEEEEESTTSCEE----EEEE-------------------------ETTEEEEEETTTEEEEEEEECCTT
T ss_pred hhhhhccCCCCce----EEEe-------------------------CCCCEEEEecCCccEEEEeccCCC
Confidence 5666553 32222 1111 456789999999999999977643
No 63
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.94 E-value=1.3e-24 Score=233.81 Aligned_cols=241 Identities=15% Similarity=0.109 Sum_probs=164.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEcCCCCC--CC---
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQ--FP--- 92 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d----g~i~~Wd~~t~~--~~--- 92 (485)
+|++.++++|+.|++|+|||+.........++.+|.++|.+++|+||++.|++++.+ +.|++||..... +.
T Consensus 68 spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~ 147 (611)
T 1nr0_A 68 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 147 (611)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS
T ss_pred CCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCC
Confidence 678999999999999999998633334566788899999999999999888888765 478888753210 00
Q ss_pred ----------------------CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 011436 93 ----------------------ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 93 ----------------------~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~ 150 (485)
.....|+......+..+.+|...|.+++|+|||++||+++.|++|++||+.+++++..
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence 0012244444555677889999999999999999999999999999999999999877
Q ss_pred eccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeec
Q 011436 151 YDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG 229 (485)
Q Consensus 151 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~ 229 (485)
+.... +. .......+.+++|+|+|++|++++.++ |++||+.++++++++.
T Consensus 228 ~~~~~------------~~-----------------~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~ 278 (611)
T 1nr0_A 228 FEDDS------------LK-----------------NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 278 (611)
T ss_dssp CBCTT------------SS-----------------SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ecccc------------cc-----------------ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence 63200 00 001223457999999999999999997 9999999999998875
Q ss_pred ccCCccceeeeeeccCCc--------------cCcceeeeecccccc--ccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011436 230 KVENNDRFLRIALYQGDR--------------SSKKVRKIPAAAANA--NESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 230 ~~~~~~r~~~~s~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
.+...........|.+.. ...+.....+..+.. ..... .||+.+|+||+.|++|++|+.+..
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~-spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 279 VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE-eCCCCEEEEEeCCCcEEEEECCCC
Confidence 432111000000111100 000000011112222 11222 389999999999999999987644
No 64
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.93 E-value=2.2e-24 Score=211.23 Aligned_cols=222 Identities=17% Similarity=0.168 Sum_probs=167.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|++|++||++ ++++++++.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 74 ~~~~~~l~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~------------- 138 (312)
T 4ery_A 74 SSDSNLLVSASDDKTLKIWDVS--SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT------------- 138 (312)
T ss_dssp CTTSSEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-------------
T ss_pred cCCCCEEEEECCCCEEEEEECC--CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------------
Confidence 5677889999999999999997 7788999999999999999999999999999999999999977
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc-chhHHHhhhcCCCcccc----------
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE-SLEVAQDLQRSDAPLYR---------- 170 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~-~~~~i~~~~~~~~~~~~---------- 170 (485)
+..+..+..|...|.+++|+|+|++|++++.|+.|++||+++++++..+.. +...+..+++++..-+-
T Consensus 139 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 139 -GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp -CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred -CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 445566888999999999999999999999999999999999999887632 22334444554432111
Q ss_pred cccccccchhhhhHhhhccCCC--CCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCc
Q 011436 171 LEAIDFGRRMAVEKEIEKTETA--PPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDR 247 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~--~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~ 247 (485)
+++...++.+ ..+..+... ........+++++|++++.++ |++||+.++++++.+.+|...+..+ .|.
T Consensus 218 iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~---~~~--- 288 (312)
T 4ery_A 218 LWDYSKGKCL---KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST---ACH--- 288 (312)
T ss_dssp EEETTTTEEE---EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEE---EEC---
T ss_pred EEECCCCcEE---EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEE---eec---
Confidence 1111111110 111111111 122233457899999999987 9999999999999999987443322 222
Q ss_pred cCcceeeeeccccccccCCCCCCCCeEEEeee--cCceEEEEecC
Q 011436 248 SSKKVRKIPAAAANANESKEPFSDPTLLCCAF--KRHRIYLFSRR 290 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~--~d~~i~~f~~~ 290 (485)
|+..+++|++ +|++|++|...
T Consensus 289 ----------------------p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 289 ----------------------PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ----------------------SSSSEEEEEECTTTCCEEEEECC
T ss_pred ----------------------CcCCceEEEEccCCccEEEecCC
Confidence 6777888886 79999999754
No 65
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.93 E-value=1.4e-24 Score=219.48 Aligned_cols=213 Identities=12% Similarity=0.164 Sum_probs=165.7
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCC----------
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQF---------- 91 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~---------- 91 (485)
+|++.+++||+.|++|+|||+. +++.++++++|...|.+++|+|++++|++++.|+.+++||+.+...
T Consensus 75 sp~~~~l~s~s~D~~v~iWd~~--~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~ 152 (380)
T 3iz6_a 75 TPEKNWIVSASQDGRLIVWNAL--TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV 152 (380)
T ss_dssp CTTSSCEEEEETTSEEEEEETT--TTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCB
T ss_pred cCCCCEEEEEeCCCeEEEEECC--CCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceee
Confidence 5678889999999999999997 7888999999999999999999999999999999999998754210
Q ss_pred --------------C------------CceeEEEEcCCCceEEe-----ecCCccEEEEEEcC-CCCEEEEEeCCCcEEE
Q 011436 92 --------------P------------ESEVSFRLKSDTNLFEI-----LKSKTTVSAIEVSP-DGKQFSITSPDRRIRV 139 (485)
Q Consensus 92 --------------~------------~~~~~~~~~~~~~l~~~-----~~~~~~v~~i~~sp-dg~~lat~s~D~~I~i 139 (485)
+ .....|++..+..+..+ .+|...|.+++|+| ++.+|++|+.|++|++
T Consensus 153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~ 232 (380)
T 3iz6_a 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232 (380)
T ss_dssp CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence 0 00233666666666655 57889999999987 8999999999999999
Q ss_pred EECC-CCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEE
Q 011436 140 FWFR-TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIV 217 (485)
Q Consensus 140 wd~~-tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~ 217 (485)
||++ ++++++++.+| ...+.+++|+|+|++|++++.++ |++|
T Consensus 233 wd~~~~~~~~~~~~~h------------------------------------~~~v~~v~~~p~~~~l~s~s~D~~i~lw 276 (380)
T 3iz6_a 233 WDLRITSRAVRTYHGH------------------------------------EGDINSVKFFPDGQRFGTGSDDGTCRLF 276 (380)
T ss_dssp EETTTTCCCCEEECCC------------------------------------SSCCCEEEECTTSSEEEEECSSSCEEEE
T ss_pred EECCCCCcceEEECCc------------------------------------CCCeEEEEEecCCCeEEEEcCCCeEEEE
Confidence 9998 45666665432 22356999999999999999997 9999
Q ss_pred EcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 218 NLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 218 d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
|+.++++++++..+..... .....+..+.+ .|++.+|++|+.|+.|++|+....+
T Consensus 277 d~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~-----------s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 277 DMRTGHQLQVYNREPDRND----------NELPIVTSVAF-----------SISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp ETTTTEEEEEECCCCSSSC----------CSSCSCSEEEE-----------CSSSSEEEEECTTSCEEEEETTTCC
T ss_pred ECCCCcEEEEecccccccc----------cccCceEEEEE-----------CCCCCEEEEEECCCCEEEEECCCCc
Confidence 9999999988866531100 00000111111 2788999999999999999876544
No 66
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.93 E-value=1.7e-25 Score=224.54 Aligned_cols=231 Identities=12% Similarity=0.138 Sum_probs=163.7
Q ss_pred CCCcceEEEEeCC------CCeEEEEEcCCCC--CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 011436 21 GDVKAGLAISDRN------SSFVHIYDARADS--NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP 92 (485)
Q Consensus 21 ~~~~~~l~vs~s~------d~~I~iwd~~~~~--~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~ 92 (485)
.+|++.++++++. |++|++|+...+. ........+|...|.+++|+|++. +++++.||+|++||+.+++..
T Consensus 50 fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~ 128 (357)
T 4g56_B 50 YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESL 128 (357)
T ss_dssp ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------
T ss_pred ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecccccee
Confidence 3678999999987 7789999876211 123344557999999999999975 556788999999999875433
Q ss_pred CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcc--c-
Q 011436 93 ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPL--Y- 169 (485)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~--~- 169 (485)
.. ......+|...|.+++|+|||++|++++.|++|++||+.+++++..+..|...+.++++++..- +
T Consensus 129 ~~----------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 129 LV----------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp CC----------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred EE----------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 21 1123457899999999999999999999999999999999999999988887777777655421 1
Q ss_pred --------ccccccccchhhhhHhhh-ccCCCCCceEEECCC-CCEEEEecCCC-eEEEEcccCeEEEeecccCCcccee
Q 011436 170 --------RLEAIDFGRRMAVEKEIE-KTETAPPSNAIFDES-SNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFL 238 (485)
Q Consensus 170 --------~~~~~~~g~~~~~~~~i~-~~~~~~~~~i~fd~~-g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~ 238 (485)
.+++...++.. ..+. ......+.+++|+|+ +++|++++.++ |++||+.++++++++.+|...++.+
T Consensus 199 s~~~dg~v~~wd~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPA---TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp EEETTSCEEECCTTSSSCB---CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred eeccCCceEEEECCCCcee---eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 11111111110 0011 112334578999997 46888888887 9999999999999999888655544
Q ss_pred eeeeccCCccCcceeeeeccccccccCCCCCCC-CeEEEeeecCceEEEEecCCCC
Q 011436 239 RIALYQGDRSSKKVRKIPAAAANANESKEPFSD-PTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.+ . |+ ..+|+||+.|++|+||+.+..+
T Consensus 276 ~~---s-------------------------p~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 276 AY---S-------------------------YHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp EE---C-------------------------SSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EE---c-------------------------CCCCCEEEEEeCCCEEEEEECCCCc
Confidence 33 2 33 4689999999999999875443
No 67
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.93 E-value=6.5e-25 Score=232.93 Aligned_cols=183 Identities=16% Similarity=0.249 Sum_probs=157.9
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|++|++||. +++.++++.+|..+|++++|+||+++|++++.|+.|++||..
T Consensus 394 s~dg~~l~~~~~d~~v~~~~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-------------- 456 (577)
T 2ymu_A 394 SPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-------------- 456 (577)
T ss_dssp CTTSSCEEEEETTSEEEEECT---TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--------------
T ss_pred CCCCCEEEEEeCCCEEEEEeC---CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--------------
Confidence 567888999999999999996 467889999999999999999999999999999999999963
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
+..+..+.+|...|.+++|+|||++||+++.|++|++|| .++++++++..|.
T Consensus 457 -~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~-------------------------- 508 (577)
T 2ymu_A 457 -GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS-------------------------- 508 (577)
T ss_dssp -SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCS--------------------------
T ss_pred -CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCC--------------------------
Confidence 344566889999999999999999999999999999999 4788888875422
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccc
Q 011436 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAA 260 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~ 260 (485)
..+.+++|+|+|++|++++.++ |++||. ++++++++.+|...+..+.+ .
T Consensus 509 ----------~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~f---s---------------- 558 (577)
T 2ymu_A 509 ----------SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF---S---------------- 558 (577)
T ss_dssp ----------SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEE---C----------------
T ss_pred ----------CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEE---c----------------
Confidence 1345899999999999999998 999995 78999999998855543332 1
Q ss_pred ccccCCCCCCCCeEEEeeecCceEEEEe
Q 011436 261 NANESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 261 ~~~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
||+.+|+|++.|+.|++|+
T Consensus 559 ---------~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 559 ---------PDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ---------TTSSCEEEEETTSCEEEEC
T ss_pred ---------CCCCEEEEEeCCCEEEEeC
Confidence 7888899999999999995
No 68
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.93 E-value=4.3e-24 Score=208.45 Aligned_cols=191 Identities=11% Similarity=0.135 Sum_probs=146.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
++.+++|++.|++|+|||++.+....+.++.+|...|.+++|+|+ +.+|++++.|+.|++||+.+...
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~---------- 135 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT---------- 135 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----------
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----------
Confidence 467899999999999999973222467788899999999999998 88999999999999999876321
Q ss_pred CCCceEEeecCCccEEEEEEcCC-------------CCEEEEEeCCCcEEEEECCCCc----EEEEeccchhHHHhhhcC
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPD-------------GKQFSITSPDRRIRVFWFRTGK----LRRVYDESLEVAQDLQRS 164 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spd-------------g~~lat~s~D~~I~iwd~~tg~----~~~~~~~~~~~i~~~~~~ 164 (485)
.....+.+|...|.+++|+|+ +++||+|+.|++|+|||+++++ +..++.+|
T Consensus 136 --~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H---------- 203 (297)
T 2pm7_B 136 --TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH---------- 203 (297)
T ss_dssp --BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC----------
T ss_pred --eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC----------
Confidence 112447789999999999997 5799999999999999998876 44444332
Q ss_pred CCcccccccccccchhhhhHhhhccCCCCCceEEECCCC---CEEEEecCCC-eEEEEcccCe---EEEee--cccCCcc
Q 011436 165 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS---NFLIYATLLG-IKIVNLHTNK---VSRIL--GKVENND 235 (485)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g---~~l~~~s~~~-i~v~d~~tg~---~v~~~--~~~~~~~ 235 (485)
...+.+++|+|++ ++|++++.++ |++||+.+++ ....+ .++...
T Consensus 204 --------------------------~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~- 256 (297)
T 2pm7_B 204 --------------------------SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV- 256 (297)
T ss_dssp --------------------------SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-
T ss_pred --------------------------CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCc-
Confidence 2234689999995 8999999987 9999997643 11222 122211
Q ss_pred ceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 236 RFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 236 r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+..+.. .||+.+|++++.|++|++|...
T Consensus 257 ----------------v~~~~~-----------s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 257 ----------------LWRASW-----------SLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ----------------EEEEEE-----------CSSSCCEEEEETTSCEEEEEEC
T ss_pred ----------------EEEEEE-----------CCCCCEEEEEcCCCcEEEEEEC
Confidence 111111 1788899999999999999765
No 69
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.93 E-value=9.2e-24 Score=207.98 Aligned_cols=210 Identities=14% Similarity=0.131 Sum_probs=156.1
Q ss_pred ceEEEEeCCCCeEEEEEcCCCC---CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc-------
Q 011436 25 AGLAISDRNSSFVHIYDARADS---NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES------- 94 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~---~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~------- 94 (485)
+.+++||+.|++|+|||+.... ..+.+++.+|..+|.+++|+|++++|++++.|+.|++|+.........
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~ 130 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc
Confidence 5789999999999999986321 235778899999999999999999999999999888886553221100
Q ss_pred ------------------------------------------------------------------eeEEEEcCCCceEE
Q 011436 95 ------------------------------------------------------------------EVSFRLKSDTNLFE 108 (485)
Q Consensus 95 ------------------------------------------------------------------~~~~~~~~~~~l~~ 108 (485)
...|++.....+..
T Consensus 131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~ 210 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred eeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeE
Confidence 01133344445566
Q ss_pred eecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhc
Q 011436 109 ILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK 188 (485)
Q Consensus 109 ~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~ 188 (485)
+.+|...|.+++|+|||++|++++.|+.|++||+.++++++.+..+
T Consensus 211 ~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---------------------------------- 256 (340)
T 4aow_A 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---------------------------------- 256 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS----------------------------------
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC----------------------------------
Confidence 7789999999999999999999999999999999999988776431
Q ss_pred cCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCC
Q 011436 189 TETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEP 268 (485)
Q Consensus 189 ~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (485)
..+.++.|+|++.+++.+....|++||+.++.++..+..+... ....+ ....+..+.+
T Consensus 257 ---~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~~--h~~~v~~l~~----------- 314 (340)
T 4aow_A 257 ---DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS------TSSKA--EPPQCTSLAW----------- 314 (340)
T ss_dssp ---SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------------C--CCCCEEEEEE-----------
T ss_pred ---ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEecccccee------eeccC--CCCCEEEEEE-----------
Confidence 1235889999998887776666999999999998887654310 00111 1112333322
Q ss_pred CCCCeEEEeeecCceEEEEecC
Q 011436 269 FSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 269 ~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.||+.+|+||+.|++|++|.-+
T Consensus 315 s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 315 SADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEeCC
Confidence 2888999999999999999764
No 70
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.93 E-value=5e-24 Score=208.71 Aligned_cols=163 Identities=19% Similarity=0.195 Sum_probs=136.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCC-cceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSN-EPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~-~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+|++.++++++.|++|++||++ ++ .+...+.+|...|.+++|+| ++.+|+|++.|++|++||+.+..
T Consensus 106 ~~~~~~l~sgs~D~~v~lWd~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~--------- 174 (304)
T 2ynn_A 106 HPTKPYVLSGSDDLTVKLWNWE--NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------- 174 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEEGG--GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS---------
T ss_pred cCCCCEEEEECCCCeEEEEECC--CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC---------
Confidence 4677889999999999999997 44 56678899999999999999 67899999999999999987632
Q ss_pred EcCCCceEEe-ecCCccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccc
Q 011436 100 LKSDTNLFEI-LKSKTTVSAIEVSP--DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDF 176 (485)
Q Consensus 100 ~~~~~~l~~~-~~~~~~v~~i~~sp--dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (485)
....+ .+|...+..++|+| ++.+|++++.|++|++||+++++++.++.+|..
T Consensus 175 -----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~-------------------- 229 (304)
T 2ynn_A 175 -----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS-------------------- 229 (304)
T ss_dssp -----CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--------------------
T ss_pred -----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--------------------
Confidence 22223 34567899999987 788999999999999999999999988865321
Q ss_pred cchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccc
Q 011436 177 GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDR 236 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r 236 (485)
.+..++|+|++++|++++.++ |++||+.++++++++..+.....
T Consensus 230 ----------------~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~ 274 (304)
T 2ynn_A 230 ----------------NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274 (304)
T ss_dssp ----------------CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEE
T ss_pred ----------------CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEE
Confidence 235889999999999999997 99999999999999988764333
No 71
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=3.4e-24 Score=209.03 Aligned_cols=238 Identities=12% Similarity=0.108 Sum_probs=166.1
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCC
Q 011436 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTL 89 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~ 89 (485)
.++.| ++++.++ .| .|++|+|||+. +++++++++ +|...|++|+|+|++++|+||+.||+|++||.+++
T Consensus 29 ~~l~W-----S~~~~lA-vg-~D~tV~iWd~~--tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~ 99 (318)
T 4ggc_A 29 NLVDW-----SSGNVLA-VA-LDNSVYLWSAS--SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99 (318)
T ss_dssp BCEEE-----CTTSEEE-EE-ETTEEEEEETT--TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEE-----CCCCEEE-EE-eCCEEEEEECC--CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc
Confidence 45666 3455444 44 48999999997 778887776 68889999999999999999999999999999887
Q ss_pred CCCCce--------------------------eEEEEc-CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011436 90 QFPESE--------------------------VSFRLK-SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWF 142 (485)
Q Consensus 90 ~~~~~~--------------------------~~~~~~-~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~ 142 (485)
+..... ..|... ....+..+.+|...+.+++++++|++|++++.|++|++||+
T Consensus 100 ~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred eeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence 654220 001111 12344567889999999999999999999999999999999
Q ss_pred CCCcEE----EEeccchhHHHhhhcCCC-------------cccccccccccchhhhhHhhhccCCCCCceEEECCCCCE
Q 011436 143 RTGKLR----RVYDESLEVAQDLQRSDA-------------PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 205 (485)
Q Consensus 143 ~tg~~~----~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~ 205 (485)
++++.. .....+...+......+. ...+++....+.. .........+..+.|+|+++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----LSAVDAHSQVCSILWSPHYKE 254 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----EEEEECSSCEEEEEEETTTTE
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----cccccceeeeeeeeecccccc
Confidence 987632 222222222222222211 1111111110100 011123345578899999999
Q ss_pred EEEec--CCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCc
Q 011436 206 LIYAT--LLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRH 282 (485)
Q Consensus 206 l~~~s--~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~ 282 (485)
+++++ .++ |++||+.++++++++.+|...+..+.+ . ||+.+|+||+.|+
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~---s-------------------------pdg~~l~S~s~D~ 306 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM---S-------------------------PDGATVASAAADE 306 (318)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE---C-------------------------TTSSCEEEEETTT
T ss_pred eEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE---c-------------------------CCCCEEEEEecCC
Confidence 88765 455 999999999999999999865554433 1 7888999999999
Q ss_pred eEEEEecCC
Q 011436 283 RIYLFSRRE 291 (485)
Q Consensus 283 ~i~~f~~~~ 291 (485)
+|+||+-.+
T Consensus 307 ~v~iWd~~~ 315 (318)
T 4ggc_A 307 TLRLWRCFE 315 (318)
T ss_dssp EEEEECCSC
T ss_pred eEEEEECCC
Confidence 999997654
No 72
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.93 E-value=1.6e-24 Score=215.77 Aligned_cols=237 Identities=17% Similarity=0.144 Sum_probs=162.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|++|+|||++ ++++++++.+|..+|.+++|+|++++|++++.|++|++||+.... . +
T Consensus 85 ~~~~~~l~s~s~D~~v~lwd~~--~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~-----~--- 153 (343)
T 2xzm_R 85 SQENCFAISSSWDKTLRLWDLR--TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-K-----F--- 153 (343)
T ss_dssp CSSTTEEEEEETTSEEEEEETT--SSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-E-----E---
T ss_pred CCCCCEEEEEcCCCcEEEEECC--CCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-e-----e---
Confidence 4677889999999999999997 788899999999999999999999999999999999999985311 0 0
Q ss_pred CCCceEEeecCCccEEEEEEcCCC----------CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDG----------KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg----------~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
.......|...|.+++|+|++ .+|++++.|++|++|| .++++..++..|...+..+++++..-+-+
T Consensus 154 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 229 (343)
T 2xzm_R 154 ---SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIA 229 (343)
T ss_dssp ---ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ---eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEE
Confidence 001123688899999999997 7999999999999999 56777778877776677677666532221
Q ss_pred ccccccchhhh-----hHhhhc-cCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEE--eecccCCccceeeeeec
Q 011436 172 EAIDFGRRMAV-----EKEIEK-TETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSR--ILGKVENNDRFLRIALY 243 (485)
Q Consensus 172 ~~~~~g~~~~~-----~~~i~~-~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~--~~~~~~~~~r~~~~s~~ 243 (485)
.....|.-..+ ...... .....+.+++|+|++++|++++..+|++||+.+++... .+..+. .. .....
T Consensus 230 sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~--~~--~~~~~ 305 (343)
T 2xzm_R 230 TGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP--IT--KAEGQ 305 (343)
T ss_dssp EEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS--GG--GBTTB
T ss_pred EEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc--ch--hhhhh
Confidence 11111110000 000000 12334678899999998888877789999988776543 332111 00 00000
Q ss_pred cCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 244 QGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.+ ....+..++. .||+.+|++|+.|++|++|+.+
T Consensus 306 ~~--~~~~v~~~~~-----------sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 306 KG--KNPQCTSLAW-----------NALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp CC--SCCCEEEEEE-----------CSSSCCEEEEETTSEEEEEEEE
T ss_pred cC--CCCceEEEEE-----------CCCCCeEEEecCCceEEEEEEE
Confidence 00 1111222222 2888899999999999999764
No 73
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=8e-25 Score=214.71 Aligned_cols=198 Identities=13% Similarity=0.130 Sum_probs=136.7
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCC--cceEEEecCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSN--EPLISKKVHMGPVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~--~~~~~l~~h~~~V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
+|++.++++++.|++|+|||+..+.. +++..+.+|..+|++++|+| ++++|++++.||.|++||+.+++.....
T Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~-- 97 (351)
T 3f3f_A 20 DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG-- 97 (351)
T ss_dssp CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS--
T ss_pred cCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc--
Confidence 45777899999999999999972221 46778889999999999999 6999999999999999998875432210
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEEEec-------------cchhHHHhhh
Q 011436 98 FRLKSDTNLFEILKSKTTVSAIEVSPD--GKQFSITSPDRRIRVFWFRTGKLRRVYD-------------ESLEVAQDLQ 162 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spd--g~~lat~s~D~~I~iwd~~tg~~~~~~~-------------~~~~~i~~~~ 162 (485)
+.-..+..+..|...|.+++|+|+ +++|++++.|+.|++||++++++++.+. .+...+.++.
T Consensus 98 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (351)
T 3f3f_A 98 ---RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLS 174 (351)
T ss_dssp ---CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEE
T ss_pred ---cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEE
Confidence 001345567889999999999999 9999999999999999999888654332 1222223333
Q ss_pred cCCC---cccccccccccch---------hhhhHhhhccCCCCCceEEECCCC----CEEEEecCCC-eEEEEcccCeEE
Q 011436 163 RSDA---PLYRLEAIDFGRR---------MAVEKEIEKTETAPPSNAIFDESS----NFLIYATLLG-IKIVNLHTNKVS 225 (485)
Q Consensus 163 ~~~~---~~~~~~~~~~g~~---------~~~~~~i~~~~~~~~~~i~fd~~g----~~l~~~s~~~-i~v~d~~tg~~v 225 (485)
+++. .-+-+.....+.. ......+ ......+.+++|+|+| ++|++++.++ |++||+.++...
T Consensus 175 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 253 (351)
T 3f3f_A 175 WCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL-PGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSP 253 (351)
T ss_dssp ECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC-CCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--
T ss_pred eccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec-CCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCc
Confidence 3332 0000000000000 0000011 1234467899999999 8999999988 999999887443
No 74
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.93 E-value=3.7e-24 Score=215.62 Aligned_cols=193 Identities=13% Similarity=0.102 Sum_probs=145.9
Q ss_pred CCcceEE--EEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLA--ISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~--vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+|+++++ ++++.|++|+|||++ +++++.++. |...|.+|+|+||++++++++.|+.+ +|+..+++..
T Consensus 142 SpDg~~la~as~~~d~~i~iwd~~--~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~-~~~~~~~~~~------- 210 (365)
T 4h5i_A 142 SREGTVAAIASSKVPAIMRIIDPS--DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLE-VISTVTGSCI------- 210 (365)
T ss_dssp CTTSSCEEEEESCSSCEEEEEETT--TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEE-EEETTTCCEE-------
T ss_pred cCCCCEEEEEECCCCCEEEEeECC--CCcEEEEeC-CCCceEEEEEccCCceEEeccceeEE-EEEeccCcce-------
Confidence 4566554 466689999999997 778888875 77889999999999999999966554 5544442211
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccc
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR----RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~----~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
.......|...|.+++|+|||+++++++.|+ .+++||+..+........
T Consensus 211 -----~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~---------------------- 263 (365)
T 4h5i_A 211 -----ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSK---------------------- 263 (365)
T ss_dssp -----EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEE----------------------
T ss_pred -----eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeee----------------------
Confidence 0112456788899999999999999999887 688999877654211100
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEee-cccCCccceeeeeeccCCccCccee
Q 011436 176 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL-GKVENNDRFLRIALYQGDRSSKKVR 253 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~-~~~~~~~r~~~~s~~~~~~~~~~~~ 253 (485)
.+ ......+.+++|+|+|++|++|+.++ |+|||+.++++++++ .+|...+..+.+ .
T Consensus 264 ---------~~-~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f---S--------- 321 (365)
T 4h5i_A 264 ---------QV-TNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI---S--------- 321 (365)
T ss_dssp ---------EE-ESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE---C---------
T ss_pred ---------ee-cCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE---C---------
Confidence 00 01122456899999999999999997 999999999999875 788865554433 2
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 254 KIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
||+.+||||+.|++|+||+-+
T Consensus 322 ----------------pdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 322 ----------------PDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp ----------------TTSCEEEEEETTSEEEEEECC
T ss_pred ----------------CCCCEEEEEeCCCeEEEEEcC
Confidence 899999999999999999864
No 75
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.92 E-value=3e-25 Score=222.71 Aligned_cols=195 Identities=11% Similarity=0.106 Sum_probs=146.4
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCC--cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSN--EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~--~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+|++.++++++.|++|+|||+. ++ +++.++.+|..+|.+++|+|++++|++++.|+.|++||+.+.+.
T Consensus 20 s~~g~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~-------- 89 (377)
T 3dwl_C 20 NSQRTEFVTTTATNQVELYEQD--GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT-------- 89 (377)
T ss_dssp CSSSSEEECCCSSSCBCEEEEE--TTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C--------
T ss_pred CCCCCEEEEecCCCEEEEEEcc--CCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc--------
Confidence 4577899999999999999997 55 67888899999999999999999999999999999999977431
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEeccchhHHHhhhcCCCcccccccccc
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL---RRVYDESLEVAQDLQRSDAPLYRLEAIDF 176 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (485)
-.....+.+|...|.+++|+|+|++|++++.|+.|++||+.+++. .+.+..
T Consensus 90 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------------- 143 (377)
T 3dwl_C 90 ---WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR----------------------- 143 (377)
T ss_dssp ---CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS-----------------------
T ss_pred ---eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec-----------------------
Confidence 123455778999999999999999999999999999999988763 333321
Q ss_pred cchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEccc------------------CeEEEeecccCCccce
Q 011436 177 GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT------------------NKVSRILGKVENNDRF 237 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t------------------g~~v~~~~~~~~~~r~ 237 (485)
.....+.+++|+|+|++|++++.++ |++||+.+ ++++..+ +|...+..
T Consensus 144 ------------~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 210 (377)
T 3dwl_C 144 ------------PLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHA 210 (377)
T ss_dssp ------------SCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEE
T ss_pred ------------ccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEE
Confidence 1223456999999999999999987 99999964 4444444 33322221
Q ss_pred eeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 238 LRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+.+ .||+.+|++++.|++|++|+.+..+
T Consensus 211 ~~~----------------------------sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 211 VGF----------------------------SPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEE----------------------------CTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEE----------------------------CCCCCEEEEEeCCCcEEEEECCCCC
Confidence 111 2788899999999999999887554
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.92 E-value=1.7e-23 Score=228.14 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=158.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC---CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADS---NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~---~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
+..+++||+.|++|+|||+.... +.+.+.+.+|...|.+++|+|++++|+|++.|++|++||+.+
T Consensus 394 ~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~------------ 461 (694)
T 3dm0_A 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA------------ 461 (694)
T ss_dssp CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT------------
T ss_pred CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC------------
Confidence 45689999999999999986321 234678899999999999999999999999999999999977
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
+..+..+.+|...|.+++|+|+|++|+++|.|++|++||+...... .+....
T Consensus 462 --~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~------------------------- 513 (694)
T 3dm0_A 462 --GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY-TISEGG------------------------- 513 (694)
T ss_dssp --TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-EECSST-------------------------
T ss_pred --CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-eeccCC-------------------------
Confidence 4455668899999999999999999999999999999998654332 221100
Q ss_pred hhhHhhhccCCCCCceEEECCCC--CEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeec
Q 011436 181 AVEKEIEKTETAPPSNAIFDESS--NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g--~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
..+...+.+++|+|++ .+|++++.++ |++||+.++++++++.+|...++.+.+
T Consensus 514 -------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~----------------- 569 (694)
T 3dm0_A 514 -------EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV----------------- 569 (694)
T ss_dssp -------TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE-----------------
T ss_pred -------CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE-----------------
Confidence 0112235689999987 5899999887 999999999999999998855443322
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 258 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 258 ~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.||+.+|+||+.|++|++|+-+..+
T Consensus 570 -----------spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 570 -----------SPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp -----------CTTSSEEEEEETTSBCEEEETTTTE
T ss_pred -----------eCCCCEEEEEeCCCeEEEEECCCCc
Confidence 1788899999999999999876544
No 77
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.3e-24 Score=219.87 Aligned_cols=184 Identities=16% Similarity=0.128 Sum_probs=145.8
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV--HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~--h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
.++++.++++++.|++|++||++ +++++.++.+ |...|++++|+|++++|++++.||.|++||+++
T Consensus 178 ~~~~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---------- 245 (437)
T 3gre_A 178 VNEEKSLLVALTNLSRVIIFDIR--TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF---------- 245 (437)
T ss_dssp ECSSCEEEEEEETTSEEEEEETT--TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT----------
T ss_pred EcCCCCEEEEEeCCCeEEEEeCC--CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC----------
Confidence 34578899999999999999998 7888999998 899999999999999999999999999999986
Q ss_pred EEcCCCceEEee-cCCccEEEEEEc----CCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccc
Q 011436 99 RLKSDTNLFEIL-KSKTTVSAIEVS----PDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 99 ~~~~~~~l~~~~-~~~~~v~~i~~s----pdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
+..+..+. .|...|.+++|+ |++++|++++.|+.|++||+.++++++.+.++...+....+++....
T Consensus 246 ----~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 317 (437)
T 3gre_A 246 ----NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG---- 317 (437)
T ss_dssp ----TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS----
T ss_pred ----ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc----
Confidence 34444454 677889999555 57889999999999999999999999999776555444444443111
Q ss_pred ccccchhhhhHhhhc-cCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011436 174 IDFGRRMAVEKEIEK-TETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~-~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
+ ....+.. .....+.+++|+ ++++|++++.++ |++||+.++++++.+.+|.
T Consensus 318 ------l-~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 370 (437)
T 3gre_A 318 ------L-EELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPS 370 (437)
T ss_dssp ------G-GGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC-
T ss_pred ------c-ccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEeccc
Confidence 0 0000111 123346799999 889999999887 9999999999999888764
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.1e-23 Score=205.81 Aligned_cols=250 Identities=13% Similarity=0.083 Sum_probs=162.9
Q ss_pred CCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCC
Q 011436 10 IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTL 89 (485)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~ 89 (485)
....+..+.. +|++.++++++.|+.|+|||+. +++++.++.+|..+|.+++|+|++++|++++.||.|++||+.++
T Consensus 31 h~~~v~~~~~--s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 31 HERPLTQVKY--NKEGDLLFSCSKDSSASVWYSL--NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp CSSCEEEEEE--CTTSCEEEEEESSSCEEEEETT--TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred eeceEEEEEE--cCCCCEEEEEeCCCEEEEEeCC--CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 3344444433 4577889999999999999997 78889999999999999999999999999999999999999876
Q ss_pred CCCCc--------------------------------eeEEEEcCCC-----------ceEEeecCCc--cEEEEEEcCC
Q 011436 90 QFPES--------------------------------EVSFRLKSDT-----------NLFEILKSKT--TVSAIEVSPD 124 (485)
Q Consensus 90 ~~~~~--------------------------------~~~~~~~~~~-----------~l~~~~~~~~--~v~~i~~spd 124 (485)
+.... ...|++.... .+..+..|.. .+.+++|+|+
T Consensus 107 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 107 QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp CEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred cEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 54311 1113322221 2333444444 8999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC-CcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh----Hhhh-ccCCCCCceEE
Q 011436 125 GKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE----KEIE-KTETAPPSNAI 198 (485)
Q Consensus 125 g~~lat~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~----~~i~-~~~~~~~~~i~ 198 (485)
|++|++++.|+.|++||+.+ ++.+..+..+...+..+++++..-+-+.....|.-..+. ..+. -.....+..++
T Consensus 187 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 266 (369)
T 3zwl_B 187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAV 266 (369)
T ss_dssp GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEE
Confidence 99999999999999999999 788888766554444444443321111110000000000 0000 01223344556
Q ss_pred ECCCCCEEEEecCCC---------------eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccc
Q 011436 199 FDESSNFLIYATLLG---------------IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANAN 263 (485)
Q Consensus 199 fd~~g~~l~~~s~~~---------------i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~ 263 (485)
|+|+|++|++++.++ +++||..+++++..+.+|...+..+.+
T Consensus 267 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~----------------------- 323 (369)
T 3zwl_B 267 ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI----------------------- 323 (369)
T ss_dssp ECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE-----------------------
T ss_pred ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE-----------------------
Confidence 666666666655432 556666666655555555433222211
Q ss_pred cCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 264 ESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 264 ~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.||+.+|+|++.|++|++|+-+.
T Consensus 324 -----s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 324 -----SPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -----CTTSSEEEEEETTSEEEEEEECH
T ss_pred -----CCCCCEEEEEcCCCeEEEEECcc
Confidence 27888999999999999998754
No 79
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=1.3e-23 Score=213.64 Aligned_cols=276 Identities=12% Similarity=0.049 Sum_probs=162.4
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcc-----eEEEecCCCCeEEEEEcC--------CCCEEEEEeCCCcEEEEcCCC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEP-----LISKKVHMGPVKVMRYNP--------VFDTVISADDKGIIEYWSPHT 88 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~-----~~~l~~h~~~V~~l~fsp--------d~~~l~s~s~dg~i~~Wd~~t 88 (485)
++...++++++.|++|+|||++ .+++ +..+.+|.+.|++|+|+| |+++|||+|.|++|++||+.+
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~--~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITK--NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEE--TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred CCCCCEEEEEeCCCcEEEEECC--CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 4567789999999999999997 4432 233569999999999998 889999999999999999865
Q ss_pred CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCc
Q 011436 89 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~ 167 (485)
+.++..+.+|...|.+++|+|++. +|++++.|++|++||+++++.......+..... ..
T Consensus 176 --------------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~------~~ 235 (393)
T 4gq1_A 176 --------------EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN------PW 235 (393)
T ss_dssp --------------TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC------CC
T ss_pred --------------CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc------ce
Confidence 445566788999999999999874 899999999999999999987655432211100 00
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEEC-CCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccC
Q 011436 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD-ESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQG 245 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd-~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~ 245 (485)
........... ..........+.++.|+ ++|+.|++++.++ +++||+.+++....+..+......+.+. .
T Consensus 236 ~~s~~~~~~~~-----~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~--~- 307 (393)
T 4gq1_A 236 LLTLNTLPLVN-----TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL--P- 307 (393)
T ss_dssp SEEEESGGGC-----------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCS--C-
T ss_pred EEeccccccee-----eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc--c-
Confidence 00000000000 00111233456788875 8999999999987 9999999998888777665332211111 0
Q ss_pred CccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCCccCCCccccCCCCCcccccccccCCCCcc
Q 011436 246 DRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPEDATKGRDIFNEKPPPDELLAVSDIGNSVT 325 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~~~~~rd~~n~~p~~e~~~~~~~~~~~~~ 325 (485)
....................+..++++|+.|++|++|+...++..... .-...| +...+ +
T Consensus 308 -----~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-----~~~~~~----V~sva----f-- 367 (393)
T 4gq1_A 308 -----NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-----IQLGMP----IVDFC----W-- 367 (393)
T ss_dssp -----SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE-----EECSSC----EEEEE----E--
T ss_pred -----ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe-----cCCCCc----EEEEE----E--
Confidence 000000000000112223367889999999999999987655433210 000011 11011 1
Q ss_pred CCCCCEEEEEeCCeEEEEEecC
Q 011436 326 TSLPDNVILHTTMGDIHMKLYP 347 (485)
Q Consensus 326 ~~~~~~~~~~t~~G~i~i~L~~ 347 (485)
...+..+..-+..|.+.++|.+
T Consensus 368 spdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 368 HQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp CTTSSEEEEEESSEEEEEEEGG
T ss_pred cCCCCEEEEEeCCCeEEEEEeC
Confidence 1234567777888999998875
No 80
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.5e-24 Score=225.88 Aligned_cols=192 Identities=8% Similarity=0.036 Sum_probs=153.1
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCC---------cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSN---------EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE 93 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~---------~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~ 93 (485)
+++.++++++.|++|+|||+..+.. .+..++.+|..+|++++|+|+ ..|++|+.||+|++||+++.+.
T Consensus 223 ~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~-- 299 (524)
T 2j04_B 223 HLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV-- 299 (524)
T ss_dssp SSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS--
T ss_pred CCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC--
Confidence 3467899999999999999963211 234578899999999999986 4899999999999999986432
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEE--EEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccc
Q 011436 94 SEVSFRLKSDTNLFEILKSKTTVSAI--EVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR 170 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i--~~spdg-~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~ 170 (485)
....+.+|...|.++ +|+|+| ++|||+|.|++|||||+++++++.++.++.
T Consensus 300 -----------~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~--------------- 353 (524)
T 2j04_B 300 -----------PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF--------------- 353 (524)
T ss_dssp -----------CSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC---------------
T ss_pred -----------ceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc---------------
Confidence 233478899999999 678998 899999999999999999887655442211
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccC
Q 011436 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSS 249 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~ 249 (485)
....+.+++|+|+|+.|++++.++ |++||+.++++++++.+|...+..+.+ .
T Consensus 354 -------------------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~---S----- 406 (524)
T 2j04_B 354 -------------------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV---S----- 406 (524)
T ss_dssp -------------------SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEEC---C-----
T ss_pred -------------------ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEe---C-----
Confidence 001246899999999999998876 999999999998888888855553322 1
Q ss_pred cceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 250 KKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
||+.+|+||+.|++|++|+..
T Consensus 407 --------------------p~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 407 --------------------RLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp --------------------SSCCBCEEEETTTEEECCBSC
T ss_pred --------------------CCCCeEEEEECCCEEEEEech
Confidence 777889999999999999753
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.92 E-value=2.4e-23 Score=227.06 Aligned_cols=237 Identities=16% Similarity=0.136 Sum_probs=172.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|++|+|||+. ++.+++++.+|...|.+++|+|++++|+|++.|++|++||...... +.+
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~------~~~- 509 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLA--AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK------YTI- 509 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE------EEE-
T ss_pred CCCCCEEEEEeCCCcEEEEECC--CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc------eee-
Confidence 5678899999999999999997 7788999999999999999999999999999999999999753110 000
Q ss_pred CCCceEEeecCCccEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccc---------
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDG--KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR--------- 170 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg--~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~--------- 170 (485)
.....+|...|.+++|+|++ ..|++++.|++|++||++++++..++.+|...+.++++++..-+-
T Consensus 510 ----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i 585 (694)
T 3dm0_A 510 ----SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585 (694)
T ss_dssp ----CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred ----ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 00124688899999999987 689999999999999999999999999888877777777653222
Q ss_pred -cccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCC---
Q 011436 171 -LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGD--- 246 (485)
Q Consensus 171 -~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~--- 246 (485)
+++...++.+. .+ .....+.+++|+|++.+|++++..+|++||+.++++++.+..+... ..... ...+.
T Consensus 586 ~iwd~~~~~~~~---~~--~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 658 (694)
T 3dm0_A 586 LLWDLAEGKKLY---SL--EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKA-EAEKA-DNSGPAAT 658 (694)
T ss_dssp EEEETTTTEEEE---CC--BCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------
T ss_pred EEEECCCCceEE---Ee--cCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccccc-ccccc-cccccccC
Confidence 22221122110 11 1233567899999999999998888999999999999888654311 10000 00000
Q ss_pred -ccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 247 -RSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 247 -~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.....+..+. + .||+.+|+||+.|++|++|+-
T Consensus 659 ~~~~~~~~~l~----------~-spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 659 KRKVIYCTSLN----------W-SADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp --CCCCEEEEE----------E-CTTSSEEEEEETTSEEEEEEC
T ss_pred CceeEEeeeEE----------E-cCCCCEEEEEcCCCeEEEEec
Confidence 0000011111 1 289999999999999999974
No 82
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=8.7e-24 Score=207.57 Aligned_cols=190 Identities=15% Similarity=0.124 Sum_probs=140.8
Q ss_pred cceEEEEeC--CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC---CCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 24 KAGLAISDR--NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP---VFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 24 ~~~l~vs~s--~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp---d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+++++.+++ .|+.|++|++. .+++.+.++.+|...|+.++|+| ++++|+|+|.|++|++||+.+
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s-~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T---------- 212 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFA-EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT---------- 212 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEEC-TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT----------
T ss_pred CCcEEEecccCCCCcEEEEEEC-CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC----------
Confidence 344444432 49999999995 35778888889999999999999 779999999999999999988
Q ss_pred EEcCCCceEEeecCC---ccEEEEEEcCCCCEE------------EEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhc
Q 011436 99 RLKSDTNLFEILKSK---TTVSAIEVSPDGKQF------------SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQR 163 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~---~~v~~i~~spdg~~l------------at~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~ 163 (485)
++.++.+.+|. ..+.+++|||||+++ ++|+.|++|++||..++++++++.-. .
T Consensus 213 ----Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~--------~ 280 (356)
T 2w18_A 213 ----GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC--------L 280 (356)
T ss_dssp ----CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC--------C
T ss_pred ----CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee--------c
Confidence 44555576543 357888999999987 66889999999999999998765100 0
Q ss_pred CCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeee
Q 011436 164 SDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIAL 242 (485)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~ 242 (485)
+. |. ....+..+.+|.++++++.++ |||||+.+|++++++.+|..... ....
T Consensus 281 -p~----------Gh--------------~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vv--s~va 333 (356)
T 2w18_A 281 -PP----------GQ--------------AGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHW--SFVK 333 (356)
T ss_dssp -CT----------TC--------------CCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCC--CEEE
T ss_pred -cC----------CC--------------cceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeE--EEEE
Confidence 00 00 001223344488999999887 99999999999999988863322 1123
Q ss_pred ccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEe
Q 011436 243 YQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFS 288 (485)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~ 288 (485)
|. ||+.+|+||+.|++||||+
T Consensus 334 fS-------------------------PDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 334 WS-------------------------GTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EC-------------------------SSSSEEEEECTTSCEEEEE
T ss_pred EC-------------------------CCCCEEEEEECCCcEEEec
Confidence 43 8999999999999999996
No 83
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.92 E-value=2.7e-23 Score=212.72 Aligned_cols=241 Identities=12% Similarity=0.122 Sum_probs=172.7
Q ss_pred CCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcC
Q 011436 9 FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~ 86 (485)
|....+.| +++..+++ | .|++|+|||+. ++++++.+. +|...|++|+|+|++++|++|+.||.|++||+
T Consensus 106 ~y~~~l~w-----S~~n~lAv-g-ld~tV~lWd~~--tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 106 YYLNLVDW-----SSGNVLAV-A-LDNSVYLWSAS--SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176 (420)
T ss_dssp TTCBCEEE-----CTTSEEEE-E-ETTEEEEEETT--TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ccceeEEE-----CCCCEEEE-E-eCCEEEEEECC--CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEc
Confidence 44455666 23444444 4 48999999997 777777665 78889999999999999999999999999999
Q ss_pred CCCCCCCc--------------------------eeEEEEcC-CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 011436 87 HTLQFPES--------------------------EVSFRLKS-DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRV 139 (485)
Q Consensus 87 ~t~~~~~~--------------------------~~~~~~~~-~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~i 139 (485)
++++.... ...|+... ...+..+.+|...+..+.|+|+|+++++++.|+.|++
T Consensus 177 ~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 177 QQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceE
Confidence 88765421 01122222 2345567889999999999999999999999999999
Q ss_pred EECCCCcE----EEEeccchhHHHhhhcCCCc-------------ccccccccccchhhhhHhhhccCCCCCceEEECCC
Q 011436 140 FWFRTGKL----RRVYDESLEVAQDLQRSDAP-------------LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES 202 (485)
Q Consensus 140 wd~~tg~~----~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~ 202 (485)
||..+++. +.....+...+..+++.+.. ..++++...+.... .......+.++.|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~-----~~~~~~~v~~~~~~~~ 331 (420)
T 4gga_A 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----AVDAHSQVCSILWSPH 331 (420)
T ss_dssp EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE-----EEECSSCEEEEEEETT
T ss_pred EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce-----eeccccceeeeeecCC
Confidence 99988763 34455554444444444321 11222221111110 0122345678999999
Q ss_pred CCEEEEec--CCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeee
Q 011436 203 SNFLIYAT--LLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAF 279 (485)
Q Consensus 203 g~~l~~~s--~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~ 279 (485)
++.|++++ .++ |++||+.+++++.++.+|...+..+.+ . ||+.+|+||+
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~---s-------------------------pdg~~l~S~s 383 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM---S-------------------------PDGATVASAA 383 (420)
T ss_dssp TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEE---C-------------------------TTSSCEEEEE
T ss_pred CCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE---c-------------------------CCCCEEEEEe
Confidence 99998875 455 999999999999999999865553332 1 7888999999
Q ss_pred cCceEEEEecCC
Q 011436 280 KRHRIYLFSRRE 291 (485)
Q Consensus 280 ~d~~i~~f~~~~ 291 (485)
.|++|++|.-.+
T Consensus 384 ~D~tvriWdv~~ 395 (420)
T 4gga_A 384 ADETLRLWRCFE 395 (420)
T ss_dssp TTTEEEEECCSC
T ss_pred cCCeEEEEECCC
Confidence 999999997654
No 84
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.92 E-value=3.8e-24 Score=212.49 Aligned_cols=233 Identities=10% Similarity=0.130 Sum_probs=159.7
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCC
Q 011436 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQ 90 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~ 90 (485)
.+++|... ..+++.++++++.|+.|++||+. +++++..+.+|..+|.+++|+| ++++|++++.||.|++||+.++
T Consensus 73 ~~~~~~~~-~~~~~~~l~~~~~dg~i~v~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~- 148 (366)
T 3k26_A 73 YTCAWTYD-SNTSHPLLAVAGSRGIIRIINPI--TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD- 148 (366)
T ss_dssp EEEEEEEC-TTTCCEEEEEEETTCEEEEECTT--TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-
T ss_pred EEEEeccC-CCCCCCEEEEecCCCEEEEEEch--hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-
Confidence 44555433 22336788899999999999997 7788999999999999999999 8999999999999999999763
Q ss_pred CCCceeEEEEcCCCceEEe---ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--------------
Q 011436 91 FPESEVSFRLKSDTNLFEI---LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE-------------- 153 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~---~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~-------------- 153 (485)
..+..+ ..|...|.+++|+|+|++|++++.|+.|++||+++++++..+..
T Consensus 149 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 149 -------------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp -------------EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC
T ss_pred -------------eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc
Confidence 334445 67999999999999999999999999999999998775443322
Q ss_pred --------------chhHHHhhhcCCC--------cccccccccccchhhhh--------Hhhh--ccCCCCCceEEECC
Q 011436 154 --------------SLEVAQDLQRSDA--------PLYRLEAIDFGRRMAVE--------KEIE--KTETAPPSNAIFDE 201 (485)
Q Consensus 154 --------------~~~~i~~~~~~~~--------~~~~~~~~~~g~~~~~~--------~~i~--~~~~~~~~~i~fd~ 201 (485)
+...+.+++++.. ....+++...+...... ..+. ......+.+++|+|
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM 295 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE
T ss_pred ceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC
Confidence 2222222222111 11111111111000000 0000 11233467788888
Q ss_pred C--CCEEEEecCCC-eEEEEcccCeE----EEeecccC--CccceeeeeeccCCccCcceeeeeccccccccCCCCCCCC
Q 011436 202 S--SNFLIYATLLG-IKIVNLHTNKV----SRILGKVE--NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDP 272 (485)
Q Consensus 202 ~--g~~l~~~s~~~-i~v~d~~tg~~----v~~~~~~~--~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 272 (485)
+ |++|++++.++ |++||+.++++ +..+.+|. ..+..+ .| .+|+
T Consensus 296 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~---~~-------------------------s~~~ 347 (366)
T 3k26_A 296 DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQT---SF-------------------------SRDS 347 (366)
T ss_dssp CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEE---EE-------------------------CTTS
T ss_pred CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEE---Ee-------------------------CCCC
Confidence 8 99999998887 89999988753 33555552 122211 11 1788
Q ss_pred eEEEeeecCceEEEEec
Q 011436 273 TLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~ 289 (485)
.+|++|+.|++|++|+.
T Consensus 348 ~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 348 SILIAVCDDASIWRWDR 364 (366)
T ss_dssp SEEEEEETTSEEEEEEC
T ss_pred CeEEEEeCCCEEEEEEe
Confidence 89999999999999975
No 85
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.92 E-value=1.7e-23 Score=212.66 Aligned_cols=197 Identities=12% Similarity=0.120 Sum_probs=158.0
Q ss_pred eEEEEeCCCCeEEEEEcCCCCC---cceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 26 GLAISDRNSSFVHIYDARADSN---EPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~---~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.++++++.||.|+|||+.. .+ ..+..+.+|.++|++++|+| ++++|++++.||.|++||+.++.....
T Consensus 48 ~~~~~~~~~g~i~v~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~------- 119 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGK-TGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP------- 119 (402)
T ss_dssp EEEBCCSSSCCEEEEETTC-CEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-------
T ss_pred EEEEEEcCCCEEEEEECcc-CCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-------
Confidence 3555678899999999852 22 34566789999999999999 899999999999999999987543321
Q ss_pred CCCceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEe--ccchhHHHhhhcCCCcccccccccccc
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVY--DESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
....+..+.+|...|.+++|+|+| ++|++++.|+.|++||+.+++++..+ ..|
T Consensus 120 ~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------ 175 (402)
T 2aq5_A 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH------------------------ 175 (402)
T ss_dssp BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC------------------------
T ss_pred cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC------------------------
Confidence 124566788999999999999998 69999999999999999999998777 221
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEee-cccCCccceeeeeeccCCccCcceeeee
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL-GKVENNDRFLRIALYQGDRSSKKVRKIP 256 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~-~~~~~~~r~~~~s~~~~~~~~~~~~~~~ 256 (485)
...+.+++|+|+|++|++++.++ |++||+.+++++..+ ..|... +. ....|.
T Consensus 176 ------------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~-~~~~~~------------ 229 (402)
T 2aq5_A 176 ------------PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT-RP-VHAVFV------------ 229 (402)
T ss_dssp ------------CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS-SC-CEEEEC------------
T ss_pred ------------CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC-cc-eEEEEc------------
Confidence 12346899999999999999987 999999999999888 666632 11 112222
Q ss_pred ccccccccCCCCCCCCeEEEee---ecCceEEEEecCCCC
Q 011436 257 AAAANANESKEPFSDPTLLCCA---FKRHRIYLFSRREPE 293 (485)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~s~---~~d~~i~~f~~~~~~ 293 (485)
+|+.+|++| +.|++|++|+.+..+
T Consensus 230 -------------~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 230 -------------SEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp -------------STTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred -------------CCCcEEEEeccCCCCceEEEEcCcccc
Confidence 778899999 799999999987544
No 86
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.3e-23 Score=215.55 Aligned_cols=226 Identities=12% Similarity=0.149 Sum_probs=164.4
Q ss_pred cceEEEEeCCCCeEEEEEcCC---CC-CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC---CCCCC----
Q 011436 24 KAGLAISDRNSSFVHIYDARA---DS-NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH---TLQFP---- 92 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~---~~-~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~---t~~~~---- 92 (485)
++.++++++.|++|+|||+.. +. ..+...+ +|..+|.+++|+|++++|++++.||.|++||++ +++..
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 153 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN 153 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc
Confidence 677899999999999999862 11 2234444 599999999999999999999999999999884 22110
Q ss_pred --------------------------------------CceeEEEEcCCCceEEeec--CCccEEEEEEcCCCCEEEEEe
Q 011436 93 --------------------------------------ESEVSFRLKSDTNLFEILK--SKTTVSAIEVSPDGKQFSITS 132 (485)
Q Consensus 93 --------------------------------------~~~~~~~~~~~~~l~~~~~--~~~~v~~i~~spdg~~lat~s 132 (485)
.....|+++.+..+..+.. |...|.+++|+|++++|++|+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 154 CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence 1133477777888888888 889999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEec-cchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceE----EECCCCCEEE
Q 011436 133 PDRRIRVFWFRTGKLRRVYD-ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNA----IFDESSNFLI 207 (485)
Q Consensus 133 ~D~~I~iwd~~tg~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i----~fd~~g~~l~ 207 (485)
.|+.|++||++++++++++. .+.. .+.++ .|+++|++|+
T Consensus 234 ~dg~i~iwd~~~~~~~~~~~~~~~~------------------------------------~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 234 TRGIIDIWDIRFNVLIRSWSFGDHA------------------------------------PITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp TTSCEEEEETTTTEEEEEEBCTTCE------------------------------------EEEEEEECTTTCTTEEEEE
T ss_pred CCCeEEEEEcCCccEEEEEecCCCC------------------------------------ceEEEEeccccCCCccEEE
Confidence 99999999999999988773 2111 12355 4557799999
Q ss_pred EecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccc--ccc--ccCCCCCCCCeEEEeeecCc
Q 011436 208 YATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAA--ANA--NESKEPFSDPTLLCCAFKRH 282 (485)
Q Consensus 208 ~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~d~~l~~s~~~d~ 282 (485)
+++.++ |++||+.++++++.+.+|......+.++.-+. .+....+.. +.. ..... .+..+|+||+.|+
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~v~~l~~--~~~~~l~s~~~d~ 350 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEK-----GLEELNFCGIRSLNALSTISV--SNDKILLTDEATS 350 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCS-----SGGGCCCCCCCSGGGGCCEEE--ETTEEEEEEGGGT
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccc-----ccccceecccccCCceEEEEE--CCceEEEecCCCC
Confidence 999998 99999999999999988874444332221110 000000000 111 11112 2558899999999
Q ss_pred eEEEEecCCCC
Q 011436 283 RIYLFSRREPE 293 (485)
Q Consensus 283 ~i~~f~~~~~~ 293 (485)
+|++|+-+.++
T Consensus 351 ~i~~wd~~~~~ 361 (437)
T 3gre_A 351 SIVMFSLNELS 361 (437)
T ss_dssp EEEEEETTCGG
T ss_pred eEEEEECCCcc
Confidence 99999887554
No 87
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.6e-24 Score=214.77 Aligned_cols=237 Identities=9% Similarity=0.075 Sum_probs=174.2
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCC--CCcceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARAD--SNEPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~--~~~~~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+|++.++++++.|+.|++||+... ...++..+.+|..+|.+++|+|+ +++|++++.|+.|++||+.+.+..... +
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~ 153 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN--Y 153 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT--C
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc--c
Confidence 567778888889999999999721 13578888999999999999998 899999999999999999875411000 0
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccc------hhHHHhhhcCCCc--cc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVYDES------LEVAQDLQRSDAP--LY 169 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg~~~~~~~~~------~~~i~~~~~~~~~--~~ 169 (485)
....+..+..|...|.+++|+|+ +.+|++++.|+.|++||+++++++..+..+ ...+.++++++.. ++
T Consensus 154 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 154 ---TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp ---CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred ---cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 00011124678889999999999 799999999999999999999999988665 4556666666542 11
Q ss_pred c------------cccccccchhhhhHhhhccCCCCCceEEECC-CCCEEEEecCCC-eEEEEcccCeEEEeecccCCcc
Q 011436 170 R------------LEAIDFGRRMAVEKEIEKTETAPPSNAIFDE-SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENND 235 (485)
Q Consensus 170 ~------------~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~-~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~ 235 (485)
. +++...+.. ....+.......+.+++|+| ++++|++++.++ |++||+.++++++.+.+|...+
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v 308 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNANT--PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTTS--CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred EEEECCCCCceEEEEeCCCCCC--CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCce
Confidence 1 111111100 00111102344568999999 999999999987 9999999999999998887544
Q ss_pred ceeeeeeccCCccCcceeeeeccccccccCCCCCCCC-eEEEeeecCceEEEEecCCCC
Q 011436 236 RFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDP-TLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 236 r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~l~~s~~~d~~i~~f~~~~~~ 293 (485)
..+.+ . ||. .+|++++.|++|++|+-+..+
T Consensus 309 ~~~~~---s-------------------------~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 309 FKTKF---A-------------------------PEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp CCEEE---C-------------------------TTCTTEEEECCSSSEEEEEESCCCC
T ss_pred EEEEE---C-------------------------CCCCCEEEEEecCCcEEEEEccCCC
Confidence 43322 1 555 789999999999999876543
No 88
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.91 E-value=5.9e-23 Score=217.84 Aligned_cols=184 Identities=16% Similarity=0.252 Sum_probs=157.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++..+++++.|++|++||. +++++.++.+|..+|++++|+||+++|++++.|+.|++||..
T Consensus 353 s~~g~~l~~~~~dg~v~~~~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-------------- 415 (577)
T 2ymu_A 353 SPDGQTIASASDDKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------------- 415 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEET---TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--------------
T ss_pred CCCCCEEEEEeCCCEEEEEcC---CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--------------
Confidence 567888999999999999996 467889999999999999999999999999999999999953
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
+..+..+.+|...|.+++|+||+++|++++.|++|++||. ++++++.+.+|.
T Consensus 416 -~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~-------------------------- 467 (577)
T 2ymu_A 416 -GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS-------------------------- 467 (577)
T ss_dssp -CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCS--------------------------
T ss_pred -CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC--------------------------
Confidence 3445668899999999999999999999999999999996 677776664321
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccc
Q 011436 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAA 260 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~ 260 (485)
..+.+++|+|+|++|++++.++ |++|| .++++++.+.+|...+..+.+ .
T Consensus 468 ----------~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~---s---------------- 517 (577)
T 2ymu_A 468 ----------SSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF---S---------------- 517 (577)
T ss_dssp ----------SCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEE---C----------------
T ss_pred ----------CCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEE---c----------------
Confidence 2345899999999999999987 99999 478999999998755553332 1
Q ss_pred ccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 261 NANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 261 ~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
||+.+|+|++.|+.|++|+.
T Consensus 518 ---------~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 518 ---------PDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp ---------TTSSCEEEEETTSEEEEECT
T ss_pred ---------CCCCEEEEEECcCEEEEEeC
Confidence 78889999999999999974
No 89
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.91 E-value=1.7e-22 Score=198.18 Aligned_cols=223 Identities=11% Similarity=0.066 Sum_probs=163.2
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|+.|++||+..........+.+|...|.+++|+|+++++++++.|+.|++||+++
T Consensus 106 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~------------- 172 (337)
T 1gxr_A 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN------------- 172 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------
T ss_pred cCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-------------
Confidence 4567788888899999999997322236677889999999999999999999999999999999977
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
+..+..+..|...+.+++|+|+|++|++++.|+.|++||+++++++..+.. ...+..+++++..-+-+.....+.-..
T Consensus 173 -~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~i~~ 250 (337)
T 1gxr_A 173 -QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-TSQIFSLGYCPTGEWLAVGMESSNVEV 250 (337)
T ss_dssp -TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC-CCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 344556888999999999999999999999999999999999998887742 223344444443111111100010000
Q ss_pred h------hHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceee
Q 011436 182 V------EKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRK 254 (485)
Q Consensus 182 ~------~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~ 254 (485)
. ...+ ......+.+++|+|+|++|++++.++ |++||+.+++.+....... .+..+. |
T Consensus 251 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~v~~~~---~----------- 314 (337)
T 1gxr_A 251 LHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVLSCD---I----------- 314 (337)
T ss_dssp EETTSSCEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CEEEEE---E-----------
T ss_pred EECCCCCeEEE-cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCC-cEEEEE---E-----------
Confidence 0 0011 12344568999999999999999987 9999999998875544322 222111 1
Q ss_pred eeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 255 IPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.+|+.+|++++.|++|++|+-
T Consensus 315 --------------s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 315 --------------SVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp --------------CTTSCEEEEEETTSCEEEEEE
T ss_pred --------------CCCCCEEEEecCCCeEEEEEE
Confidence 177889999999999999963
No 90
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.1e-23 Score=203.83 Aligned_cols=195 Identities=12% Similarity=0.195 Sum_probs=155.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+|++.++++++.|++|+|||+...+..+++.+.+|..+|++++|+|+ +++|++++.||.|++||+.+++.
T Consensus 20 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-------- 91 (379)
T 3jrp_A 20 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-------- 91 (379)
T ss_dssp CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEE--------
T ss_pred cCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCce--------
Confidence 45777889999999999999964455677889999999999999987 89999999999999999876321
Q ss_pred EcCCCceEEeecCCccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEEE--EeccchhHHHhhhcCCCccccccccc
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPD--GKQFSITSPDRRIRVFWFRTGKLRR--VYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spd--g~~lat~s~D~~I~iwd~~tg~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
..+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++... .+..
T Consensus 92 ----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---------------------- 145 (379)
T 3jrp_A 92 ----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---------------------- 145 (379)
T ss_dssp ----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC----------------------
T ss_pred ----eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC----------------------
Confidence 144557789999999999999 9999999999999999999874321 2211
Q ss_pred ccchhhhhHhhhccCCCCCceEEECC-------------CCCEEEEecCCC-eEEEEcccCe----EEEeecccCCccce
Q 011436 176 FGRRMAVEKEIEKTETAPPSNAIFDE-------------SSNFLIYATLLG-IKIVNLHTNK----VSRILGKVENNDRF 237 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~-------------~g~~l~~~s~~~-i~v~d~~tg~----~v~~~~~~~~~~r~ 237 (485)
....+.+++|+| ++++|++++.++ |++||+.+++ ++..+.+|...+..
T Consensus 146 --------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~ 211 (379)
T 3jrp_A 146 --------------HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 211 (379)
T ss_dssp --------------CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred --------------CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeE
Confidence 122346788888 799999999987 9999998764 55666666644442
Q ss_pred eeeeeccCCccCcceeeeeccccccccCCCCCCC---CeEEEeeecCceEEEEecCCC
Q 011436 238 LRIALYQGDRSSKKVRKIPAAAANANESKEPFSD---PTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~l~~s~~~d~~i~~f~~~~~ 292 (485)
+.+ . |+ +.+|++++.|+.|++|+.+..
T Consensus 212 ~~~---s-------------------------p~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 212 VAW---S-------------------------PTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp EEE---C-------------------------CCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEE---C-------------------------CCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 222 1 66 889999999999999987754
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.91 E-value=5.5e-23 Score=212.42 Aligned_cols=218 Identities=14% Similarity=0.170 Sum_probs=163.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
++.++++++.|++|++||+. ++++++++.+|.++|.+++|+|++ ++++++.||+|++||+++ +
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~--~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~--------------~ 193 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSI--NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK--------------G 193 (464)
T ss_dssp ETTEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT--------------T
T ss_pred CCCEEEEEcCCCcEEEEECC--CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC--------------C
Confidence 34588899999999999997 788999999999999999999988 999999999999999987 4
Q ss_pred CceEEeecCCccEEEEEEc--CCCCEEEEEeCCCcEEEEECCCCcE-----------------------EEEeccchhHH
Q 011436 104 TNLFEILKSKTTVSAIEVS--PDGKQFSITSPDRRIRVFWFRTGKL-----------------------RRVYDESLEVA 158 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~s--pdg~~lat~s~D~~I~iwd~~tg~~-----------------------~~~~~~~~~~i 158 (485)
..+..+.+|...|.+++|+ |++++|++++.|++|++||+.+++. +..+.++...+
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 4556688999999999998 6889999999999999999998763 33333333222
Q ss_pred HhhhcCCC--------cccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeec
Q 011436 159 QDLQRSDA--------PLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG 229 (485)
Q Consensus 159 ~~~~~~~~--------~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~ 229 (485)
.++..... ....+++...++.+ ..+ ......+.+++|+|+|++|++++.++ |++||+.++++++++.
T Consensus 274 ~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~---~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 349 (464)
T 3v7d_B 274 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCL---YIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTTEEE---EEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEE---EEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 22211111 11111111111111 011 12344568999999999999999988 9999999999999999
Q ss_pred ccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011436 230 KVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 230 ~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
+|...++.+.+ ++..|+||+.|++|++|+.+.+
T Consensus 350 ~h~~~v~~~~~------------------------------~~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 350 GHTALVGLLRL------------------------------SDKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp CCSSCEEEEEE------------------------------CSSEEEEEETTSEEEEEETTTC
T ss_pred CCCCcEEEEEE------------------------------cCCEEEEEeCCCcEEEEECCCC
Confidence 88755443322 2357899999999999987653
No 92
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.91 E-value=2.8e-24 Score=221.29 Aligned_cols=193 Identities=9% Similarity=0.070 Sum_probs=140.8
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
++.++++|+.||+|+|||+..........+.+|.++|++|+|+| ++++|+|+|.||+|++||+++..+.
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~---------- 200 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR---------- 200 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE----------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee----------
Confidence 45688899999999999997333334455669999999999998 6889999999999999998652110
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011436 103 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
.+.....+...+.+++|+|+|++|++|+.|+.|++||++. +++.++..
T Consensus 201 --~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~----------------------------- 248 (435)
T 4e54_B 201 --VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRM----------------------------- 248 (435)
T ss_dssp --EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBC-----------------------------
T ss_pred --EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEec-----------------------------
Confidence 0111123345678999999999999999999999999864 33333321
Q ss_pred hHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEcccCeEEEee---cccCCccceeeeeeccCCccCcceeeeec
Q 011436 183 EKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTNKVSRIL---GKVENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~tg~~v~~~---~~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
....+.+++|+|+++ +|++++.++ |++||+.+++....+ .+|...+..+ .|
T Consensus 249 -------h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~---~~-------------- 304 (435)
T 4e54_B 249 -------HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAA---CF-------------- 304 (435)
T ss_dssp -------CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEEC---CB--------------
T ss_pred -------ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccce---eE--------------
Confidence 122346899999987 777888887 999999887644332 2333222211 11
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 258 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 258 ~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.||+.+|+|++.|++|++|+-+..+
T Consensus 305 -----------spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 305 -----------SPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp -----------CTTSSEEEEEESSSCEEEEESSSSS
T ss_pred -----------CCCCCeeEEEcCCCEEEEEECCCCc
Confidence 2788899999999999999876544
No 93
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.6e-23 Score=208.69 Aligned_cols=236 Identities=10% Similarity=0.109 Sum_probs=178.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC--------
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE-------- 93 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~-------- 93 (485)
+|++.++++++.|+.|++||. ++..+..+.+|..+|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus 117 s~~~~~l~~~~~dg~i~i~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWNK---TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEET---TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred cCCCCEEEEEeCCCeEEEEeC---CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 457788889999999999994 578889999999999999999999999999999999999987654321
Q ss_pred ----------------------------------ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 011436 94 ----------------------------------SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRV 139 (485)
Q Consensus 94 ----------------------------------~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~i 139 (485)
....|++..+..+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp ------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 1223555666777788889999999999999999999999999999
Q ss_pred EECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh----hHhh--hccCCCCCceEEECCCCCEEEEecCCC
Q 011436 140 FWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV----EKEI--EKTETAPPSNAIFDESSNFLIYATLLG 213 (485)
Q Consensus 140 wd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~----~~~i--~~~~~~~~~~i~fd~~g~~l~~~s~~~ 213 (485)
||+.+++++..+..+...+..+.+++...+ +.....|.-... ...+ .......+.+++|+|+|++|++++.++
T Consensus 274 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 274 WHGGNGNSQNCFYGHSQSIVSASWVGDDKV-ISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp ECSSSBSCSEEECCCSSCEEEEEEETTTEE-EEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EECCCCccceEecCCCccEEEEEECCCCEE-EEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence 999999998888777666666666655311 111111110000 0001 112344678999999999999999987
Q ss_pred -eEEEEcccCe--------------------EEEeecccCC--ccceeeeeeccCCccCcceeeeeccccccccCCCCCC
Q 011436 214 -IKIVNLHTNK--------------------VSRILGKVEN--NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFS 270 (485)
Q Consensus 214 -i~v~d~~tg~--------------------~v~~~~~~~~--~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (485)
|++||+.+++ +++.+.+|.. .+..+. | .+
T Consensus 353 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~-------------------------s~ 404 (425)
T 1r5m_A 353 QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS---W-------------------------NC 404 (425)
T ss_dssp CEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE---E-------------------------CT
T ss_pred eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE---c-------------------------cC
Confidence 9999999888 6666666542 222111 1 17
Q ss_pred CCeEEEeeecCceEEEEec
Q 011436 271 DPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 271 d~~l~~s~~~d~~i~~f~~ 289 (485)
|..+|++++.|++|++|+-
T Consensus 405 ~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 405 AGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp TSSEEEEEESSSCCEEEEC
T ss_pred CCceEEEEecCceEEEEee
Confidence 7889999999999999974
No 94
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.91 E-value=1.2e-22 Score=206.34 Aligned_cols=195 Identities=16% Similarity=0.255 Sum_probs=150.5
Q ss_pred CC-cceEEEEeCCCCeEEEEEcCCCCC-----cceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCc
Q 011436 22 DV-KAGLAISDRNSSFVHIYDARADSN-----EPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 22 ~~-~~~l~vs~s~d~~I~iwd~~~~~~-----~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
+| ++.++++++.|++|+|||+..+.. +++..+.+|...|.+++|+|++ .+|++++.|+.|++||+++
T Consensus 90 ~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~------ 163 (402)
T 2aq5_A 90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT------ 163 (402)
T ss_dssp CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT------
T ss_pred CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC------
Confidence 44 677889999999999999972211 6788999999999999999998 6999999999999999987
Q ss_pred eeEEEEcCCCceEEe--ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccchhHHHhhhcCCCccccc
Q 011436 95 EVSFRLKSDTNLFEI--LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY-DESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~--~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~-~~~~~~i~~~~~~~~~~~~~ 171 (485)
+..+..+ ..|...|.+++|+|+|++|++++.|+.|++||+++++++..+ ..+
T Consensus 164 --------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------- 218 (402)
T 2aq5_A 164 --------GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH----------------- 218 (402)
T ss_dssp --------TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS-----------------
T ss_pred --------CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCC-----------------
Confidence 4445557 789999999999999999999999999999999999988776 221
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEe---cCCC-eEEEEcccCeE-EEeec-ccCCccceeeeeeccC
Q 011436 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA---TLLG-IKIVNLHTNKV-SRILG-KVENNDRFLRIALYQG 245 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~---s~~~-i~v~d~~tg~~-v~~~~-~~~~~~r~~~~s~~~~ 245 (485)
....+..++|+|+|++|+++ +.++ |++||+.+++. +.... .+...+..+ .|.
T Consensus 219 ------------------~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~---~~s- 276 (402)
T 2aq5_A 219 ------------------EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP---FFD- 276 (402)
T ss_dssp ------------------CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE---EEE-
T ss_pred ------------------CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE---EEc-
Confidence 11124689999999999999 6666 99999998764 22221 122111111 111
Q ss_pred CccCcceeeeeccccccccCCCCCCCCe-EEEeeecCceEEEEecCCCC
Q 011436 246 DRSSKKVRKIPAAAANANESKEPFSDPT-LLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~-l~~s~~~d~~i~~f~~~~~~ 293 (485)
+|+. ++++|+.|++|++|+-+..+
T Consensus 277 ------------------------~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 277 ------------------------PDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp ------------------------TTTTEEEEEETTCSCEEEEEECSST
T ss_pred ------------------------CCCCEEEEEEcCCCeEEEEEecCCC
Confidence 5544 45678889999999886544
No 95
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.91 E-value=6.6e-22 Score=199.09 Aligned_cols=190 Identities=11% Similarity=0.070 Sum_probs=151.0
Q ss_pred CCcc-eEEEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011436 22 DVKA-GLAISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 22 ~~~~-~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
+|++ .++++++.|++|+|||+. +.+....+. +|...|.+++|+| ++++|++++.|+.|++||+.+
T Consensus 82 ~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------- 150 (383)
T 3ei3_B 82 HPTHPTTVAVGSKGGDIILWDYD--VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--------- 150 (383)
T ss_dssp CSSCTTEEEEEEBTSCEEEEETT--STTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS---------
T ss_pred CCCCCCEEEEEcCCCeEEEEeCC--CcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---------
Confidence 3455 788888899999999997 556666665 7999999999999 779999999999999999874
Q ss_pred EEEcCCCceEEee---cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccc
Q 011436 98 FRLKSDTNLFEIL---KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 98 ~~~~~~~~l~~~~---~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
..+..+. .|...|.+++|+|++++|++++.|+.|++||+ +++++..+..|.
T Consensus 151 ------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~------------------- 204 (383)
T 3ei3_B 151 ------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK------------------- 204 (383)
T ss_dssp ------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS-------------------
T ss_pred ------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC-------------------
Confidence 1222233 34578999999999999999999999999999 577777664321
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEccc----CeEEEeecccCCccceeeeeeccCCcc
Q 011436 175 DFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHT----NKVSRILGKVENNDRFLRIALYQGDRS 248 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~t----g~~v~~~~~~~~~~r~~~~s~~~~~~~ 248 (485)
..+.+++|+|+++ +|++++.++ |++||+.+ +++++.++ |...+..+.+
T Consensus 205 -----------------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~-------- 258 (383)
T 3ei3_B 205 -----------------AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAAYF-------- 258 (383)
T ss_dssp -----------------SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-CSSCEEEEEE--------
T ss_pred -----------------CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-CCCceEEEEE--------
Confidence 2346899999999 999999987 99999998 77777773 4433332222
Q ss_pred CcceeeeeccccccccCCCCCC-CCeEEEeeecCceEEEEecCCCCC
Q 011436 249 SKKVRKIPAAAANANESKEPFS-DPTLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~-d~~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
.| |+.+|++++.|++|++|+-+..+.
T Consensus 259 --------------------s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 259 --------------------NPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp --------------------CTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred --------------------cCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 16 888999999999999999875544
No 96
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.4e-22 Score=206.01 Aligned_cols=229 Identities=11% Similarity=0.101 Sum_probs=171.4
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|+.|+|||+. +++.++++.+|...|.+++|+ ++++++++.||.|++||+.+.
T Consensus 143 s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~------------ 206 (401)
T 4aez_A 143 SHDGSFLSVGLGNGLVDIYDVE--SQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIA------------ 206 (401)
T ss_dssp CTTSSEEEEEETTSCEEEEETT--TCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS------------
T ss_pred CCCCCEEEEECCCCeEEEEECc--CCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccC------------
Confidence 4577788888899999999997 778899999999999999994 579999999999999998742
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccc---cccc
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI---DFGR 178 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~g~ 178 (485)
...+..+.+|...|.+++|+|+|++|++++.|+.|++||+++++++..+..+...+..+++++..-.-+... ..+.
T Consensus 207 -~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 207 -NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp -SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred -cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence 334556888999999999999999999999999999999999999999988877777777776421111110 0111
Q ss_pred hhhh----hHhhh-ccCCCCCceEEECCCCCEEEEe--cCCC-eEEEEcccCeEEEe--ecccCCccceeeeeeccCCcc
Q 011436 179 RMAV----EKEIE-KTETAPPSNAIFDESSNFLIYA--TLLG-IKIVNLHTNKVSRI--LGKVENNDRFLRIALYQGDRS 248 (485)
Q Consensus 179 ~~~~----~~~i~-~~~~~~~~~i~fd~~g~~l~~~--s~~~-i~v~d~~tg~~v~~--~~~~~~~~r~~~~s~~~~~~~ 248 (485)
-... ...+. ......+.+++|+|+|++|+++ +.++ |++||+.++++... +.+|...+..+.+
T Consensus 286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~-------- 357 (401)
T 4aez_A 286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSAL-------- 357 (401)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEE--------
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEE--------
Confidence 0000 00000 1233457899999999999994 4666 99999999876655 4455533332221
Q ss_pred CcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011436 249 SKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
.+|+.+|+|++.|+.|++|+-...+..
T Consensus 358 --------------------s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 358 --------------------SPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp --------------------CTTSSEEEEECTTSEEEEEECCC----
T ss_pred --------------------CCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 178889999999999999988765544
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=207.26 Aligned_cols=219 Identities=11% Similarity=0.080 Sum_probs=156.1
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcce-EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPL-ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~-~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
+.++++++.|+.|+|||+.. .+..+ ..+.+|..+|++++|+|++++|++++.||.|++||+.+++
T Consensus 54 g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------------- 119 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQD-SGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ------------- 119 (368)
T ss_dssp SEEEEEEETTSEEEEEEECT-TSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-------------
T ss_pred ceEEEEECCCCcEEEEEcCC-CCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC-------------
Confidence 58899999999999999972 14444 7888999999999999999999999999999999997632
Q ss_pred CceEEeecCCccEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHh----------hhcCCCcc---
Q 011436 104 TNLFEILKSKTTVSAIEV--SPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQD----------LQRSDAPL--- 168 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~--spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~----------~~~~~~~~--- 168 (485)
...+..|...|.+++| +|++++|++++.|+.|++||+++++++..+..+...... .......+
T Consensus 120 --~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (368)
T 3mmy_A 120 --AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQL 197 (368)
T ss_dssp --EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEEC
T ss_pred --ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEe
Confidence 2235679999999999 999999999999999999999999887766433210000 00000000
Q ss_pred ------------------------------------------cccccccccchhhhhHhhhccCC-----------CCCc
Q 011436 169 ------------------------------------------YRLEAIDFGRRMAVEKEIEKTET-----------APPS 195 (485)
Q Consensus 169 ------------------------------------------~~~~~~~~g~~~~~~~~i~~~~~-----------~~~~ 195 (485)
..++....+........+..+.. ..+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 277 (368)
T 3mmy_A 198 ENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVN 277 (368)
T ss_dssp SSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEE
T ss_pred ccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceE
Confidence 00011100000000001111111 1578
Q ss_pred eEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeE
Q 011436 196 NAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTL 274 (485)
Q Consensus 196 ~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 274 (485)
+++|+|+|++|++++.++ |++||+.++++++.+.+|...++.+.+ . ||+.+
T Consensus 278 ~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---s-------------------------~~g~~ 329 (368)
T 3mmy_A 278 GIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF---N-------------------------HNGNI 329 (368)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE---C-------------------------TTSSC
T ss_pred EEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE---C-------------------------CCCCe
Confidence 999999999999999987 999999999999999888755443322 2 78888
Q ss_pred EEeeecCceEEEE
Q 011436 275 LCCAFKRHRIYLF 287 (485)
Q Consensus 275 ~~s~~~d~~i~~f 287 (485)
|++|+.|...+.|
T Consensus 330 l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 330 FAYASSYDWSKGH 342 (368)
T ss_dssp EEEEECCCSTTCG
T ss_pred EEEEecccccccc
Confidence 9999998744444
No 98
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.90 E-value=1.1e-23 Score=207.55 Aligned_cols=192 Identities=12% Similarity=0.067 Sum_probs=143.2
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
++.+++|++.|++|+|||++.+...++.++.+|...|.+++|+|+ +.+|++++.|++|++||..+... +.
T Consensus 70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~------~~-- 141 (316)
T 3bg1_A 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ------WE-- 141 (316)
T ss_dssp GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC------EE--
T ss_pred CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC------cc--
Confidence 467899999999999999973222567788899999999999998 78999999999999999865311 00
Q ss_pred CCCceEEeecCCccEEEEEEcCC-----------------CCEEEEEeCCCcEEEEECCCC---cEEEEeccchhHHHhh
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPD-----------------GKQFSITSPDRRIRVFWFRTG---KLRRVYDESLEVAQDL 161 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spd-----------------g~~lat~s~D~~I~iwd~~tg---~~~~~~~~~~~~i~~~ 161 (485)
....+.+|...|.+++|+|+ +++||+|+.|++|++||++++ +++.++.+|
T Consensus 142 ---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h------- 211 (316)
T 3bg1_A 142 ---VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH------- 211 (316)
T ss_dssp ---ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-------
T ss_pred ---eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-------
Confidence 01235678889999999998 479999999999999999765 234333221
Q ss_pred hcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCC----CEEEEecCCC-eEEEEcccC---e-EEEeecccC
Q 011436 162 QRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS----NFLIYATLLG-IKIVNLHTN---K-VSRILGKVE 232 (485)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g----~~l~~~s~~~-i~v~d~~tg---~-~v~~~~~~~ 232 (485)
...+.+++|+|++ ++|++++.++ |++|++.++ + ..+.+.+|+
T Consensus 212 -----------------------------~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 262 (316)
T 3bg1_A 212 -----------------------------SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN 262 (316)
T ss_dssp -----------------------------SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECS
T ss_pred -----------------------------CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCC
Confidence 1234689999987 8999999998 999998763 1 112233333
Q ss_pred CccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 233 NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 233 ~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
..+. .+++ .||+.+|++|+.|++|++|...
T Consensus 263 ~~v~-----------------~v~~-----------sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 263 DVVW-----------------HVSW-----------SITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp SCEE-----------------EEEE-----------CTTTCCEEEEESSSCEEEEEEC
T ss_pred CcEE-----------------EEEE-----------cCCCCEEEEEcCCCeEEEEEEC
Confidence 2222 1111 1788899999999999999764
No 99
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.90 E-value=1.4e-22 Score=202.11 Aligned_cols=195 Identities=13% Similarity=0.130 Sum_probs=154.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCc--ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNE--PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+|++.++++++.|+.|+|||+. +++ ++.++.+|..+|.+++|+|++++|++++.|+.|++||+++++..
T Consensus 17 s~~~~~l~~~~~d~~v~i~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------- 87 (372)
T 1k8k_C 17 NKDRTQIAICPNNHEVHIYEKS--GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK------- 87 (372)
T ss_dssp CTTSSEEEEECSSSEEEEEEEE--TTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE-------
T ss_pred CCCCCEEEEEeCCCEEEEEeCC--CCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee-------
Confidence 4577888999899999999997 555 88899999999999999999999999999999999998663211
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEeccchhHHHhhhcCCCcccccccccc
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL---RRVYDESLEVAQDLQRSDAPLYRLEAIDF 176 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (485)
....+..|...|.+++|+|+|++|++++.|+.|++||+.+++. ...+.
T Consensus 88 -----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~------------------------ 138 (372)
T 1k8k_C 88 -----PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK------------------------ 138 (372)
T ss_dssp -----EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC------------------------
T ss_pred -----eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee------------------------
Confidence 1223467888999999999999999999999999999988763 22221
Q ss_pred cchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc------------------cCeEEEeecccCCccce
Q 011436 177 GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH------------------TNKVSRILGKVENNDRF 237 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~------------------tg~~v~~~~~~~~~~r~ 237 (485)
......+.+++|+|+|++|++++.++ |++||+. ++++++.+.+|...+..
T Consensus 139 -----------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 207 (372)
T 1k8k_C 139 -----------KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 207 (372)
T ss_dssp -----------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred -----------cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEE
Confidence 01123457999999999999999887 9999954 67777777666533332
Q ss_pred eeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 238 LRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 238 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+.+ .+++.+|++++.|++|++|+.+..+
T Consensus 208 ~~~----------------------------~~~~~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 208 VCF----------------------------SANGSRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp EEE----------------------------CSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred EEE----------------------------CCCCCEEEEEeCCCEEEEEECCCCc
Confidence 221 1677789999999999999887544
No 100
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.90 E-value=1.2e-22 Score=224.32 Aligned_cols=224 Identities=12% Similarity=0.131 Sum_probs=179.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.||+|+|||+. ++..+.++.+|..+|++++|+|++++|++++.||.|++||..+
T Consensus 22 sp~~~~la~~~~~g~v~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~------------- 86 (814)
T 3mkq_A 22 HPTEPWVLTTLYSGRVEIWNYE--TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT------------- 86 (814)
T ss_dssp CSSSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-------------
T ss_pred CCCCCEEEEEeCCCEEEEEECC--CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------------
Confidence 5677888888899999999997 7888999999999999999999999999999999999999987
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEeccchhHHHhhhcCC-Cccc----------
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTG-KLRRVYDESLEVAQDLQRSD-APLY---------- 169 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg-~~~~~~~~~~~~i~~~~~~~-~~~~---------- 169 (485)
+..+..+.+|...|.+++|+|+|++|++++.|+.|++||+.++ .+...+..+...+.++.+++ ..-+
T Consensus 87 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 87 -GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp -CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred -CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 4455668899999999999999999999999999999999987 67778877777777777766 2111
Q ss_pred ccccccccchhhhhHhhhccCCCCCceEEECC--CCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCC
Q 011436 170 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE--SSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGD 246 (485)
Q Consensus 170 ~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~--~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~ 246 (485)
.+++...+.. ...+..+....+..++|+| +|++|++++.++ |++||+.+++++..+.+|...+..+.+ .
T Consensus 166 ~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~---~-- 237 (814)
T 3mkq_A 166 KVWSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF---H-- 237 (814)
T ss_dssp EEEETTCSSC---SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE---C--
T ss_pred EEEECCCCcc---eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE---c--
Confidence 1111111110 0112223335678999999 999999999988 999999999999999888755443322 2
Q ss_pred ccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011436 247 RSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
|++.+|++++.|++|++|+....
T Consensus 238 -----------------------~~~~~l~~~~~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 238 -----------------------PTLPIIISGSEDGTLKIWNSSTY 260 (814)
T ss_dssp -----------------------SSSSEEEEEETTSCEEEEETTTC
T ss_pred -----------------------CCCCEEEEEeCCCeEEEEECCCC
Confidence 67778999999999999987643
No 101
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.90 E-value=3e-23 Score=211.02 Aligned_cols=214 Identities=13% Similarity=0.112 Sum_probs=158.9
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|+.|++||+. +.+....+..| ..+....|+|++++|++++.||.|++||+.+
T Consensus 65 s~~g~~l~~~~~d~~v~i~d~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------- 128 (420)
T 3vl1_A 65 EKVGSHLYKARLDGHDFLFNTI--IRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF------------- 128 (420)
T ss_dssp EEEETTEEEEEETTEEEEEECC--SEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-------------
T ss_pred eecCCeEEEEEcCCcEEEEEec--ccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-------------
Confidence 3456678888889999999997 55555555566 4455667899999999999999999999876
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
+..+..+.+|...|.+++|+|+|++|++++.|+.|++||+.++++++.+.+|
T Consensus 129 -~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h--------------------------- 180 (420)
T 3vl1_A 129 -NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH--------------------------- 180 (420)
T ss_dssp -CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC---------------------------
T ss_pred -cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC---------------------------
Confidence 3334446789999999999999999999999999999999999887776432
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccc-eeeeeeccCCccCcceeeeeccc
Q 011436 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDR-FLRIALYQGDRSSKKVRKIPAAA 259 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r-~~~~s~~~~~~~~~~~~~~~~~~ 259 (485)
...+.+++|+|+|++|++++.++ |++||+.++++++.+..+..... ...++++.+.... +.. ...
T Consensus 181 ---------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~--~~~ 247 (420)
T 3vl1_A 181 ---------RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ--LHE--IST 247 (420)
T ss_dssp ---------SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS--CGG--GCC
T ss_pred ---------CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce--eee--ccc
Confidence 12346899999999999999987 99999999999999986542222 1222222221100 000 000
Q ss_pred cccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 260 ANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 260 ~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.......+ .+++.+|++|+.|++|++|+.+..+
T Consensus 248 ~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 248 SKKNNLEF-GTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp CCCCTTCS-SCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CcccceEE-cCCCCEEEEEcCCCeEEEEECCCCc
Confidence 00122222 3899999999999999999987554
No 102
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.90 E-value=4.3e-22 Score=195.24 Aligned_cols=230 Identities=12% Similarity=0.071 Sum_probs=163.7
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCC-CcceEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADS-NEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~-~~~~~~l~--~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+|++.++++++ |+.|++||+..+. ...+..+. +|..+|.+++|+|++++|++++.|+.|++||+.+.+.
T Consensus 60 ~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------- 131 (337)
T 1gxr_A 60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP------- 131 (337)
T ss_dssp CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------
T ss_pred ecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc-------
Confidence 46778888887 9999999997321 22445555 8999999999999999999999999999999876431
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
.....+..|...+.+++|+|++++|++++.|+.|++||+++++.++.+..+...+..+.+++..-+-+.....|.
T Consensus 132 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 132 -----RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp -----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred -----ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence 134457788899999999999999999999999999999999999999777666666666554211111111110
Q ss_pred hhhh----hHhh-hccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcce
Q 011436 179 RMAV----EKEI-EKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKV 252 (485)
Q Consensus 179 ~~~~----~~~i-~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~ 252 (485)
-... .+.+ .......+.+++|+|+|++|++++.++ |++||+.+++... +..|...+..+.+
T Consensus 207 i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~~~~v~~~~~------------ 273 (337)
T 1gxr_A 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKF------------ 273 (337)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEE------------
T ss_pred EEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCCccceeEEEE------------
Confidence 0000 0000 012234457888888888888888776 8888888877643 3444423332211
Q ss_pred eeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 253 RKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.+|+.+|++++.|++|++|+.+..+
T Consensus 274 ----------------~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 274 ----------------AYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp ----------------CTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ----------------CCCCCEEEEecCCCcEEEEECCCCe
Confidence 1778889999999999999876443
No 103
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.90 E-value=3.1e-23 Score=208.02 Aligned_cols=205 Identities=13% Similarity=0.098 Sum_probs=144.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCc---ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNE---PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~---~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+|++.++++++.|++|+|||+. ++. +...+.+|...|.+++|+|++++|++++.|+.|++||+++.+..
T Consensus 64 s~~~~~l~s~s~d~~v~vwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------ 135 (377)
T 3dwl_C 64 APKSNRIVTCSQDRNAYVYEKR--PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW------ 135 (377)
T ss_dssp CTTTCCEEEEETTSSEEEC--------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C------
T ss_pred eCCCCEEEEEeCCCeEEEEEcC--CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc------
Confidence 4567788999999999999997 443 67778899999999999999999999999999999999764310
Q ss_pred EEcCCCceEEeec-CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011436 99 RLKSDTNLFEILK-SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 99 ~~~~~~~l~~~~~-~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
..+..+.+ |...|.+++|+|+|++|++++.|++|++||+.+++....... ..++
T Consensus 136 -----~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--------------------~~~~ 190 (377)
T 3dwl_C 136 -----WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEA--------------------SVWG 190 (377)
T ss_dssp -----CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCS--------------------CSSC
T ss_pred -----eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccc--------------------cccc
Confidence 12344666 899999999999999999999999999999976543111000 0000
Q ss_pred chhhh---hHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeE----EEeecccCCccceeeeeeccCCccC
Q 011436 178 RRMAV---EKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKV----SRILGKVENNDRFLRIALYQGDRSS 249 (485)
Q Consensus 178 ~~~~~---~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~----v~~~~~~~~~~r~~~~s~~~~~~~~ 249 (485)
.++.. ...+ .....+.+++|+|+|++|++++.++ |++||+.++++ ++.+.+|...+..+.+ .
T Consensus 191 ~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~---s----- 260 (377)
T 3dwl_C 191 SRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLW---A----- 260 (377)
T ss_dssp SCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEE---E-----
T ss_pred cccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEE---c-----
Confidence 00000 0011 2233467999999999999999987 99999999987 7777777644443222 1
Q ss_pred cceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 250 KKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+|+.+|++|++|+.+ +|...
T Consensus 261 --------------------~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 261 --------------------NESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp --------------------ETTEEEEEESSSSEE-EECCC
T ss_pred --------------------CCCCEEEEEcCCcEE-EEEeC
Confidence 678899999888776 55443
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.8e-22 Score=200.76 Aligned_cols=198 Identities=11% Similarity=0.086 Sum_probs=156.6
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
..+++.++++|+.|++|++||+. +++.+.++. ...|.++.|+|+ ++|++.|++|++|+... ....|++
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~--~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-----~~~~~~~ 111 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLK--DSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-----QITILDS 111 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEES--SSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-----EEEEEET
T ss_pred hcCCCCEEEEECCCCcEEEEECC--CCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-----ceEEeec
Confidence 34577899999999999999997 777788776 567889999998 99999999999998764 1223555
Q ss_pred cCCCceEEee-cCCccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011436 101 KSDTNLFEIL-KSKTTVSAIEVSP--DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 101 ~~~~~l~~~~-~~~~~v~~i~~sp--dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
..+..+..+. +|...|.+++|+| ++++|++++.|++|++||++++++++.+..
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~------------------------ 167 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA------------------------ 167 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC------------------------
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec------------------------
Confidence 5555455554 6778899999999 999999999999999999999998765522
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEE-Eeecc-cCCccceeeeeeccCCccCcceee
Q 011436 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVS-RILGK-VENNDRFLRIALYQGDRSSKKVRK 254 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v-~~~~~-~~~~~r~~~~s~~~~~~~~~~~~~ 254 (485)
+....+.+++|+|+|++|++|+.++ |++||+.+++++ ..+.. |...+..+.+ .
T Consensus 168 -----------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~f---s---------- 223 (343)
T 3lrv_A 168 -----------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKF---A---------- 223 (343)
T ss_dssp -----------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEE---C----------
T ss_pred -----------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEE---e----------
Confidence 1112357999999999999999987 999999999987 77776 7655443332 1
Q ss_pred eeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCC
Q 011436 255 IPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
|++.+|+++++| +|++|+-+..+.
T Consensus 224 ---------------~~g~~l~s~~~~-~v~iwd~~~~~~ 247 (343)
T 3lrv_A 224 ---------------DNGYWMVVECDQ-TVVCFDLRKDVG 247 (343)
T ss_dssp ---------------TTSSEEEEEESS-BEEEEETTSSTT
T ss_pred ---------------CCCCEEEEEeCC-eEEEEEcCCCCc
Confidence 788889999966 999999876543
No 105
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.90 E-value=1.2e-22 Score=202.02 Aligned_cols=200 Identities=12% Similarity=0.142 Sum_probs=153.7
Q ss_pred CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCC
Q 011436 47 NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 126 (485)
Q Consensus 47 ~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~ 126 (485)
....+++.+|.++|.+++|+|++++|+|++.||+|++||..+ +..+..+..|...|.+++|+|+|+
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~--------------~~~~~~~~~~~~~v~~~~~s~~~~ 110 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT--------------TNKVHAIPLRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--------------CCEEEEEECSSSCEEEEEECTTSS
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--------------CCcceEeecCCccEEEEEECCCCC
Confidence 345678999999999999999999999999999999999877 445556888999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCC----cEEEEeccchhHHHhhhcCCC---------cccccccccccchhhhhHhhhccCCCC
Q 011436 127 QFSITSPDRRIRVFWFRTG----KLRRVYDESLEVAQDLQRSDA---------PLYRLEAIDFGRRMAVEKEIEKTETAP 193 (485)
Q Consensus 127 ~lat~s~D~~I~iwd~~tg----~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~g~~~~~~~~i~~~~~~~ 193 (485)
+||+++.|+.|++||+.++ +..+.+.+|...+.++.+.+. ....+++...+..+ ..+. .....
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~---~~~~-~h~~~ 186 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT---TTFT-GHTGD 186 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEE---EEEC-CCSSC
T ss_pred EEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEE---EEEc-CCCCc
Confidence 9999999999999999876 355666666555544443322 11222222222111 0111 23445
Q ss_pred CceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCC
Q 011436 194 PSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDP 272 (485)
Q Consensus 194 ~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 272 (485)
+.+++|+|+|++|++++.++ |++||+.++++++++.+|...+..+.+ . |++
T Consensus 187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~---~-------------------------p~~ 238 (340)
T 1got_B 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF---F-------------------------PNG 238 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEE---C-------------------------TTS
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEE---c-------------------------CCC
Confidence 78999999999999999987 999999999999999988755443322 1 778
Q ss_pred eEEEeeecCceEEEEecCCC
Q 011436 273 TLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~~~~ 292 (485)
.+|+||+.|++|++|+.+..
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp SEEEEEETTSCEEEEETTTT
T ss_pred CEEEEEcCCCcEEEEECCCC
Confidence 89999999999999987643
No 106
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.1e-23 Score=217.70 Aligned_cols=200 Identities=7% Similarity=0.011 Sum_probs=142.2
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcc----eEEEecCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEcCCCCCCCCc
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEP----LISKKVHMGPVKVMRYNPV------FDTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~----~~~l~~h~~~V~~l~fspd------~~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
..+++|++.|++|+|||+. ++++ ..++.+|.+.|.+|+|+|+ +.+|||++.||+|++||+.+.+....
T Consensus 173 ~~~laS~s~D~tI~iWd~~--~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~ 250 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMN--TSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH 250 (524)
T ss_dssp ---------CEEEEEEEEE--TTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS
T ss_pred hhhhccCCCCceEEEEEcc--CCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc
Confidence 3345567789999999997 3333 2456788999999999997 57999999999999999976543211
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE-EEEeccchhHHHhhhcCCCccccccc
Q 011436 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL-RRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
.. .....+...+.+|...|.+++|+|++ .||+|+.|++|++||++++++ ...+..|
T Consensus 251 ~~---~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H------------------- 307 (524)
T 2j04_B 251 VF---KMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVH------------------- 307 (524)
T ss_dssp EE---ECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECS-------------------
T ss_pred cc---eeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecc-------------------
Confidence 00 01123455688899999999999875 899999999999999987643 2223221
Q ss_pred ccccchhhhhHhhhccCCCCCceE--EECCCC-CEEEEecCCC-eEEEEcccCeEEEeecccCC--ccceeeeeeccCCc
Q 011436 174 IDFGRRMAVEKEIEKTETAPPSNA--IFDESS-NFLIYATLLG-IKIVNLHTNKVSRILGKVEN--NDRFLRIALYQGDR 247 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i--~fd~~g-~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~--~~r~~~~s~~~~~~ 247 (485)
...+.++ +|+|+| ++|++++.|+ |+|||+.+++++.++.+|.. +++.+. |.
T Consensus 308 -----------------~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~---fs--- 364 (524)
T 2j04_B 308 -----------------DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV---YC--- 364 (524)
T ss_dssp -----------------SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE---EE---
T ss_pred -----------------cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceE---eC---
Confidence 1234567 679998 8999999998 99999999988777766542 122111 21
Q ss_pred cCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCC
Q 011436 248 SSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
||...|++++.|.+|++|+.+....
T Consensus 365 ----------------------p~~~~l~s~~~d~tv~lwd~~~~~~ 389 (524)
T 2j04_B 365 ----------------------PQIYSYIYSDGASSLRAVPSRAAFA 389 (524)
T ss_dssp ----------------------TTTTEEEEECSSSEEEEEETTCTTC
T ss_pred ----------------------CCcCeEEEeCCCCcEEEEECccccc
Confidence 6777789999999999998876543
No 107
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.90 E-value=5.5e-22 Score=204.91 Aligned_cols=229 Identities=14% Similarity=0.130 Sum_probs=175.0
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEcCCCCCCCC-------
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYN--PVFDTVISADDKGIIEYWSPHTLQFPE------- 93 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fs--pd~~~l~s~s~dg~i~~Wd~~t~~~~~------- 93 (485)
+++ ++++++.|++|++||++ ++++++++.+|..+|.+++|+ +++.++++++.|+.|++||+.+.+...
T Consensus 172 ~~~-~l~s~s~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 248 (464)
T 3v7d_B 172 HGG-ILVSGSTDRTVRVWDIK--KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248 (464)
T ss_dssp STT-EEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC
T ss_pred CCC-EEEEEeCCCCEEEEECC--CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence 344 78888899999999997 788899999999999999998 577899999999999999987654210
Q ss_pred ------------------------------------------ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEE
Q 011436 94 ------------------------------------------SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 131 (485)
Q Consensus 94 ------------------------------------------~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~ 131 (485)
....|++..+..+..+.+|...|.+++|+|+|++|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 328 (464)
T 3v7d_B 249 YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328 (464)
T ss_dssp SSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred cceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEE
Confidence 12336777777888899999999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccc--------ccccccccchhhhhHhhhccCCCCCceEEECCCC
Q 011436 132 SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY--------RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESS 203 (485)
Q Consensus 132 s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g 203 (485)
+.|+.|++||+.++++++++.+|...+..+.+++..+. .+++...+. .....+.......++|+++|
T Consensus 329 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-----RKFSYHHTNLSAITTFYVSD 403 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-----EEEEEECTTCCCEEEEEECS
T ss_pred eCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc-----eeeeecCCCCccEEEEEeCC
Confidence 99999999999999999999888777776666643211 111111111 11122344556788999999
Q ss_pred CEEEEecCCCeEEEEcccCeEEEe-ecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCc
Q 011436 204 NFLIYATLLGIKIVNLHTNKVSRI-LGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRH 282 (485)
Q Consensus 204 ~~l~~~s~~~i~v~d~~tg~~v~~-~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~ 282 (485)
++|++++...|++||+.+|++++. +..+...+..+.+ .+..+++++..|+
T Consensus 404 ~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~-----------------------------~~~~l~~~~~~~g 454 (464)
T 3v7d_B 404 NILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF-----------------------------KGKTLVAAVEKDG 454 (464)
T ss_dssp SEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEE-----------------------------ETTEEEEEEEETT
T ss_pred CEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEe-----------------------------cCCEEEEEEEeCC
Confidence 999999965699999999999986 4444433332222 2456788888898
Q ss_pred eEEEEe
Q 011436 283 RIYLFS 288 (485)
Q Consensus 283 ~i~~f~ 288 (485)
.+++|-
T Consensus 455 ~~~i~~ 460 (464)
T 3v7d_B 455 QSFLEI 460 (464)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 888773
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=213.11 Aligned_cols=255 Identities=14% Similarity=0.159 Sum_probs=166.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCc-----------ceEEEecCC------------CCeEEEEEcCCC--CEEEEEe
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNE-----------PLISKKVHM------------GPVKVMRYNPVF--DTVISAD 76 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~-----------~~~~l~~h~------------~~V~~l~fspd~--~~l~s~s 76 (485)
+|++.++++|+.|+.|+|||+. +.. ++..+.+|. .+|++++|+|++ ..|++++
T Consensus 37 s~~g~~la~g~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s 114 (447)
T 3dw8_B 37 NHSGELLATGDKGGRVVIFQQE--QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLST 114 (447)
T ss_dssp CSSSSEEEEEETTSEEEEEEEC--C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEEec--CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeC
Confidence 4678899999999999999997 333 578889998 899999999998 7999999
Q ss_pred CCCcEEEEcCCCCCCCCc--------------------------eeEEEEcCCCceEE-eecCCccEEEEEEcCCCCEEE
Q 011436 77 DKGIIEYWSPHTLQFPES--------------------------EVSFRLKSDTNLFE-ILKSKTTVSAIEVSPDGKQFS 129 (485)
Q Consensus 77 ~dg~i~~Wd~~t~~~~~~--------------------------~~~~~~~~~~~l~~-~~~~~~~v~~i~~spdg~~la 129 (485)
.|+.|++||+.+.+.... ...+... ..+... ..+|...|.+++|+|+|++|+
T Consensus 115 ~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 193 (447)
T 3dw8_B 115 NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE-ASPRRIFANAHTYHINSISINSDYETYL 193 (447)
T ss_dssp CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE-EEEEEEECSCCSSCCCEEEECTTSSEEE
T ss_pred CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee-ccceEEeccCCCcceEEEEEcCCCCEEE
Confidence 999999998765322100 0000000 011122 357999999999999999999
Q ss_pred EEeCCCcEEEEECC-CCcEEEE-------eccchhHHHhhhcCCCc-cc----------ccccccccchhhh-hHhhhcc
Q 011436 130 ITSPDRRIRVFWFR-TGKLRRV-------YDESLEVAQDLQRSDAP-LY----------RLEAIDFGRRMAV-EKEIEKT 189 (485)
Q Consensus 130 t~s~D~~I~iwd~~-tg~~~~~-------~~~~~~~i~~~~~~~~~-~~----------~~~~~~~g~~~~~-~~~i~~~ 189 (485)
++ .|+.|++||+. .++++.. +.+|...+.++++++.. .+ ++++...++.... ...+..+
T Consensus 194 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 272 (447)
T 3dw8_B 194 SA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEP 272 (447)
T ss_dssp EE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC
T ss_pred Ee-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccC
Confidence 98 79999999999 4555553 34555556666666643 11 1111111111000 0111111
Q ss_pred CC-----------CCCceEEECCCCCEEEEecCCCeEEEEccc-CeEEEeecccCCccceeeeeeccCCccCcceeeeec
Q 011436 190 ET-----------APPSNAIFDESSNFLIYATLLGIKIVNLHT-NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 190 ~~-----------~~~~~i~fd~~g~~l~~~s~~~i~v~d~~t-g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
.. ..+.+++|+|+|++|++++...|++||+.+ +++++++.+|+ ..+.-...+|..... .....+.
T Consensus 273 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~i-~~~~~~~- 349 (447)
T 3dw8_B 273 EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHE-YLRSKLCSLYENDCI-FDKFECC- 349 (447)
T ss_dssp -----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCG-GGTTTHHHHHHTSGG-GCCCCEE-
T ss_pred CCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccc-ccccccccccccccc-ccceEEE-
Confidence 11 267899999999999999993399999997 88888888876 222100001100000 0000011
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 258 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 258 ~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+ .||+.+|+||+.|++|++|+.+..+
T Consensus 350 ---------~-s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 350 ---------W-NGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp ---------E-CTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ---------E-CCCCCEEEEeccCCEEEEEEcCCCc
Confidence 1 2788889999999999999886544
No 109
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.90 E-value=1.7e-22 Score=203.74 Aligned_cols=167 Identities=13% Similarity=0.105 Sum_probs=132.1
Q ss_pred CcceE-EEEeCCCCeEEEEEcCCCC------CcceE-----EEe-------cCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 011436 23 VKAGL-AISDRNSSFVHIYDARADS------NEPLI-----SKK-------VHMGPVKVMRYNPVFDTVISADDKGIIEY 83 (485)
Q Consensus 23 ~~~~l-~vs~s~d~~I~iwd~~~~~------~~~~~-----~l~-------~h~~~V~~l~fspd~~~l~s~s~dg~i~~ 83 (485)
|++.+ +++++.|+.|++||+. . ...+. ++. .|...|.+++|+|++ ++++++.|+.|++
T Consensus 135 ~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i 211 (397)
T 1sq9_A 135 RLLSHRLVATDVKGTTYIWKFH--PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI 211 (397)
T ss_dssp ---CEEEEEEETTSCEEEEEEE--SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred CCCceEEEEEeCCCcEEEEeCC--ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence 56667 8888899999999997 4 45555 774 489999999999999 9999999999999
Q ss_pred EcCCCCCCCCceeEEEEcCCCceEEeec---C---CccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccc
Q 011436 84 WSPHTLQFPESEVSFRLKSDTNLFEILK---S---KTTVSAIEVSPDGKQFSITSPD---RRIRVFWFRTGKLRRVYDES 154 (485)
Q Consensus 84 Wd~~t~~~~~~~~~~~~~~~~~l~~~~~---~---~~~v~~i~~spdg~~lat~s~D---~~I~iwd~~tg~~~~~~~~~ 154 (485)
||+.+ +..+..+.. | ...|.+++|+|++++|++++.| +.|++||+.+++++..+...
T Consensus 212 ~d~~~--------------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~ 277 (397)
T 1sq9_A 212 SELST--------------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 277 (397)
T ss_dssp EETTT--------------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred EECCC--------------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccC
Confidence 99976 344555777 8 8999999999999999999999 99999999999998887542
Q ss_pred hhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeec
Q 011436 155 LEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG 229 (485)
Q Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~ 229 (485)
...-... +. .......+.+++|+|+|++|++++.++ |++||+.+++++..+.
T Consensus 278 ~~~~~~~---------~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 278 THSSQAS---------LG--------------EFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp -----------------C--------------CBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ccccccc---------cc--------------ccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 1100000 00 001223457899999999999999988 9999999999999998
No 110
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.90 E-value=3.6e-22 Score=199.04 Aligned_cols=171 Identities=8% Similarity=-0.011 Sum_probs=134.7
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEE--EecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLIS--KKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~--l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+|++.++++++.|+.|++||+. +++.... +..|...|.+++|+|++++|++++.|+.|++||+.+.+...
T Consensus 61 ~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~------ 132 (372)
T 1k8k_C 61 APDSNRIVTCGTDRNAYVWTLK--GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW------ 132 (372)
T ss_dssp ETTTTEEEEEETTSCEEEEEEE--TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE------
T ss_pred eCCCCEEEEEcCCCeEEEEECC--CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce------
Confidence 3467788888899999999997 5544433 46899999999999999999999999999999987633110
Q ss_pred EcCCCceEE-eecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC------------------CCcEEEEeccchhHHHh
Q 011436 100 LKSDTNLFE-ILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR------------------TGKLRRVYDESLEVAQD 160 (485)
Q Consensus 100 ~~~~~~l~~-~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~------------------tg~~~~~~~~~~~~i~~ 160 (485)
.... ...|...|.+++|+|++++|++++.|+.|++||+. +++++..+..
T Consensus 133 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 200 (372)
T 1k8k_C 133 -----VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS------- 200 (372)
T ss_dssp -----EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-------
T ss_pred -----eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC-------
Confidence 0112 35678899999999999999999999999999965 3444444321
Q ss_pred hhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceee
Q 011436 161 LQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLR 239 (485)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~ 239 (485)
....+.+++|+|+|++|++++.++ |++||+.+++++..+..|...+..+.
T Consensus 201 -----------------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 251 (372)
T 1k8k_C 201 -----------------------------SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT 251 (372)
T ss_dssp -----------------------------CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred -----------------------------CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEE
Confidence 122456899999999999999987 99999999999999988875555554
Q ss_pred ee
Q 011436 240 IA 241 (485)
Q Consensus 240 ~s 241 (485)
++
T Consensus 252 ~~ 253 (372)
T 1k8k_C 252 FI 253 (372)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 111
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.1e-22 Score=203.73 Aligned_cols=222 Identities=10% Similarity=0.125 Sum_probs=161.7
Q ss_pred CCcce-EEEEeCCCCeEEEEEc----CCCCCc------ceEEEec----------CCCCeEEEEEcCCCCEEEEEeCCCc
Q 011436 22 DVKAG-LAISDRNSSFVHIYDA----RADSNE------PLISKKV----------HMGPVKVMRYNPVFDTVISADDKGI 80 (485)
Q Consensus 22 ~~~~~-l~vs~s~d~~I~iwd~----~~~~~~------~~~~l~~----------h~~~V~~l~fspd~~~l~s~s~dg~ 80 (485)
+|++. ++++++.|+.|++||+ . +++ ....+.. |...|++++|+|++++|++++.||.
T Consensus 54 s~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 131 (425)
T 1r5m_A 54 NPLDESILAYGEKNSVARLARIVETDQ--EGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGE 131 (425)
T ss_dssp CSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCCcEEEEecCCceEEEEEEecccC--CccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 45666 8888889999999999 6 455 3455544 7889999999999999999999999
Q ss_pred EEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhH---
Q 011436 81 IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEV--- 157 (485)
Q Consensus 81 i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~--- 157 (485)
|++||. + +..+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.++.+..+...
T Consensus 132 i~i~~~-~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 132 LRLWNK-T--------------GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp EEEEET-T--------------SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred EEEEeC-C--------------CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 999993 3 4455668889999999999999999999999999999999999999988665443
Q ss_pred ------------HHhhhcCCCccccc---------ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eE
Q 011436 158 ------------AQDLQRSDAPLYRL---------EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IK 215 (485)
Q Consensus 158 ------------i~~~~~~~~~~~~~---------~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~ 215 (485)
+..+.+.+...+-. .....++.. ..+ ......+.+++|+|+|++|++++.++ |+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~---~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT---GKL-IGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp ---------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCS---EEE-CCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred eeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCcee---eee-ccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 33333332211110 011000000 001 12344568999999999999999887 99
Q ss_pred EEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 216 IVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 216 v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+||+.+++++..+.+|...+..+.+ . +++ ++++++.|++|++|+.+..+
T Consensus 273 i~d~~~~~~~~~~~~~~~~i~~~~~---~-------------------------~~~-~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 273 IWHGGNGNSQNCFYGHSQSIVSASW---V-------------------------GDD-KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp EECSSSBSCSEEECCCSSCEEEEEE---E-------------------------TTT-EEEEEETTSEEEEEETTTTE
T ss_pred EEECCCCccceEecCCCccEEEEEE---C-------------------------CCC-EEEEEeCCCcEEEEECCCCc
Confidence 9999999998888777644432222 1 566 89999999999999876543
No 112
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.90 E-value=4.2e-22 Score=200.49 Aligned_cols=216 Identities=9% Similarity=0.020 Sum_probs=155.8
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEec---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKV---HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~---h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++.++++++.|++|++||++ ...+..+.. |...|.+++|+|++++|++++.|+.|++||+.
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~------------- 193 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFS---GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD------------- 193 (383)
T ss_dssp EEEEEEEEETTTEEEEEETT---SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-------------
T ss_pred CCCEEEEEeCCCEEEEEECC---CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-------------
Confidence 56788899999999999996 355666654 44889999999999999999999999999983
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCC----CcEEEEeccchhHHHhhhcCC-Cccccc---
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRT----GKLRRVYDESLEVAQDLQRSD-APLYRL--- 171 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~t----g~~~~~~~~~~~~i~~~~~~~-~~~~~~--- 171 (485)
+..+..+.+|...|.+++|+|+++ +|++++.|+.|++||+++ ++++..+ ++...+..+++++ ..-+-+
T Consensus 194 --~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 194 --GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp --SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred --CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence 345666889999999999999999 999999999999999998 7788777 4666666777766 422111
Q ss_pred -------ccccccchhhhhHhhhccC------C----------CCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEe
Q 011436 172 -------EAIDFGRRMAVEKEIEKTE------T----------APPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRI 227 (485)
Q Consensus 172 -------~~~~~g~~~~~~~~i~~~~------~----------~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~ 227 (485)
++...+... ..+..+. . ..+..++|+|+|++ +++.++ |++||+.+++++++
T Consensus 271 ~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~ 345 (383)
T 3ei3_B 271 QRNEIRVYSSYDWSKP---DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQ 345 (383)
T ss_dssp SSSEEEEEETTBTTSC---SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEE
T ss_pred CCCcEEEEECCCCccc---cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeee
Confidence 111111110 0111000 1 11123556666666 556676 99999999999999
Q ss_pred ecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 228 LGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 228 ~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+.++. ....+....|. +|+.+|++|+ |++|++|+.+
T Consensus 346 l~~~~-~~~~~~~~~~s-------------------------~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 346 LRDPN-AAGIISLNKFS-------------------------PTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp ECBTT-BCSCCCEEEEC-------------------------TTSSEEEEEE-TTEEEEEECC
T ss_pred ecCCC-CCceEEEEEEe-------------------------cCccEEEEec-CCcEEEEecC
Confidence 97743 11222222332 7888999997 9999999865
No 113
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.90 E-value=8.4e-23 Score=210.16 Aligned_cols=211 Identities=16% Similarity=0.151 Sum_probs=146.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++++.++++|+.|++|++||++ ++++.++.+|..+|++++|+|++. ++++++.|+.|++||+.+.+....
T Consensus 218 ~~~~~~l~~g~~dg~i~~wd~~---~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~------ 288 (435)
T 4e54_B 218 SASSRMVVTGDNVGNVILLNMD---GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS------ 288 (435)
T ss_dssp ETTTTEEEEECSSSBEEEEESS---SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC------
T ss_pred CCCCCEEEEEeCCCcEeeeccC---cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce------
Confidence 4577899999999999999995 466788899999999999999986 788999999999999987543322
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
+....+|...|.+++|+|||++|++++.|++|+|||+.++++...+..+..... . .....
T Consensus 289 -----~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~------~---~~~~~------ 348 (435)
T 4e54_B 289 -----FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF------Q---HLTPI------ 348 (435)
T ss_dssp -----CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC------S---SSCCC------
T ss_pred -----EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc------c---cceeE------
Confidence 223467899999999999999999999999999999999998777643211000 0 00000
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCC--CeEEEEcccCeEEEeec-ccCCccceeeeeeccCCccCcceeeeec
Q 011436 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIVNLHTNKVSRILG-KVENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~--~i~v~d~~tg~~v~~~~-~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
...-+.......+.+++++++++..+.+ .|++||..+|+++..+. +|...+. .+..|.
T Consensus 349 ----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~--s~~~fs------------- 409 (435)
T 4e54_B 349 ----KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGIS--SLNEFN------------- 409 (435)
T ss_dssp ----BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCC--CEEEEC-------------
T ss_pred ----EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEE--EEEEEC-------------
Confidence 0000000111233344444444443333 39999999999998764 3432222 223343
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 258 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 258 ~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
||+.+|+||+ |++|+||+.+.++
T Consensus 410 ------------pdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 410 ------------PMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp ------------TTSSCEEEEC-SSEEEECCCC---
T ss_pred ------------CCCCEEEEEc-CCcEEEEECCcCe
Confidence 7888899987 6789999887655
No 114
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=9.6e-22 Score=227.48 Aligned_cols=225 Identities=11% Similarity=0.065 Sum_probs=172.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|++|+|||+. ++++++++.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~------------- 688 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAE--TGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT------------- 688 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETT--TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------------
T ss_pred CCCCCEEEEEeCCCeEEEEECC--CCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC-------------
Confidence 5688899999999999999997 7888999999999999999999999999999999999999987
Q ss_pred CCCceEEeecCCccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcc----------c
Q 011436 102 SDTNLFEILKSKTTVSAIEVSP--DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPL----------Y 169 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~sp--dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~----------~ 169 (485)
+..+..+.+|...|.+++|+| ++.++++++.|+.|++||+.+++++.++.+|...+.++.+++..- .
T Consensus 689 -~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 689 -GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp -CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred -CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 445666889999999999999 566899999999999999999999999988877777776665421 1
Q ss_pred ccccccccchhhh---------------------------------------------------hHhhhccCCCCCceEE
Q 011436 170 RLEAIDFGRRMAV---------------------------------------------------EKEIEKTETAPPSNAI 198 (485)
Q Consensus 170 ~~~~~~~g~~~~~---------------------------------------------------~~~i~~~~~~~~~~i~ 198 (485)
.+++...++.... ...+.......+.+++
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 1222111110000 0000112234456777
Q ss_pred ECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEe
Q 011436 199 FDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCC 277 (485)
Q Consensus 199 fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s 277 (485)
|+|+|+++++++.++ |++||+.+++++..+.+|...+..+.+ .||+..|+|
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~----------------------------spdg~~l~s 899 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF----------------------------SPDGSSFLT 899 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEE----------------------------CTTSSEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEE----------------------------CCCCCEEEE
Confidence 788888777777776 788888777777777777644442222 178888999
Q ss_pred eecCceEEEEecC
Q 011436 278 AFKRHRIYLFSRR 290 (485)
Q Consensus 278 ~~~d~~i~~f~~~ 290 (485)
++.|+++++|+.+
T Consensus 900 ~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 900 ASDDQTIRVWETK 912 (1249)
T ss_dssp EETTSCEEEEEHH
T ss_pred EeCCCeEEEEEcc
Confidence 9999999999854
No 115
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.89 E-value=4.5e-22 Score=200.44 Aligned_cols=247 Identities=13% Similarity=0.110 Sum_probs=163.6
Q ss_pred CC-cceEEEEeCCCCeEEEEEcCCCCCcceEEEe-------------cCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcC
Q 011436 22 DV-KAGLAISDRNSSFVHIYDARADSNEPLISKK-------------VHMGPVKVMRYNP-VFDTVISADDKGIIEYWSP 86 (485)
Q Consensus 22 ~~-~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-------------~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~ 86 (485)
+| ++.++++++.|++|+|||+. +......+. +|..+|.+++|+| ++.+|++++.||.|++||+
T Consensus 52 s~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~ 129 (408)
T 4a11_B 52 EPVEGRYMLSGGSDGVIVLYDLE--NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDT 129 (408)
T ss_dssp CTTTCCEEEEEETTSCEEEEECC--CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEET
T ss_pred ecCCCCEEEEEcCCCeEEEEECC--CCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeC
Confidence 45 67788999999999999997 433333332 5999999999999 7789999999999999998
Q ss_pred CCCCCCC------------------------------ceeEEEEcCCCceEEeecCCccEEEEEEcCCCC-EEEEEeCCC
Q 011436 87 HTLQFPE------------------------------SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDR 135 (485)
Q Consensus 87 ~t~~~~~------------------------------~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D~ 135 (485)
.+++... ....|++..+..+..+..|...|.+++|+|+++ .|++++.|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg 209 (408)
T 4a11_B 130 NTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADS 209 (408)
T ss_dssp TTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCC
Confidence 8754321 123366677777888899999999999999998 589999999
Q ss_pred cEEEEECCCCc-EEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-
Q 011436 136 RIRVFWFRTGK-LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG- 213 (485)
Q Consensus 136 ~I~iwd~~tg~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~- 213 (485)
.|++||+++++ ++..++.+..... .............+.+++|+|+|++|++++.++
T Consensus 210 ~i~i~d~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 210 RVKLWDVRRASGCLITLDQHNGKKS---------------------QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp CEEEEETTCSSCCSEECCTTTTCSC---------------------CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cEEEEECCCCCcccccccccccccc---------------------eeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence 99999999876 4444432110000 000001112334567999999999999999987
Q ss_pred eEEEEcccCeEEEeecccCC-----ccce---------eee-------eeccCCccCcceeeeecccccc--ccCCCCCC
Q 011436 214 IKIVNLHTNKVSRILGKVEN-----NDRF---------LRI-------ALYQGDRSSKKVRKIPAAAANA--NESKEPFS 270 (485)
Q Consensus 214 i~v~d~~tg~~v~~~~~~~~-----~~r~---------~~~-------s~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 270 (485)
|++||+.+++.+..+.++.. ...+ +.+ .+|.-. .......+..+.. ....+ .+
T Consensus 269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~-s~ 344 (408)
T 4a11_B 269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY---SGEQITMLKGHYKTVDCCVF-QS 344 (408)
T ss_dssp EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT---TCCEEEEECCCSSCEEEEEE-ET
T ss_pred EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECc---CCcceeeeccCCCeEEEEEE-cC
Confidence 99999999887655433210 0000 000 111100 0000111111221 11222 27
Q ss_pred CCeEEEeeecCceEEEEecCCCCCC
Q 011436 271 DPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 271 d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
|+.+|+||+.|+.|++|+.+..+..
T Consensus 345 ~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 345 NFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp TTTEEEEEETTSCEEEEEECC----
T ss_pred CCCEEEEECCCCeEEEEeCCCCCcc
Confidence 8889999999999999998765544
No 116
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.89 E-value=1.6e-22 Score=203.87 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=165.0
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCc------ceEEEecCCCCeEEEEEcCC----C---CEEEEEeCCCcEEEEcCCCCCCC
Q 011436 26 GLAISDRNSSFVHIYDARADSNE------PLISKKVHMGPVKVMRYNPV----F---DTVISADDKGIIEYWSPHTLQFP 92 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~------~~~~l~~h~~~V~~l~fspd----~---~~l~s~s~dg~i~~Wd~~t~~~~ 92 (485)
.++++++.|++|+|||+. +.+ ++..+.+|..+|.+++|+|+ + ++|++++.|+.|++||+.+.+.+
T Consensus 27 ~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~ 104 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNK--LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET 104 (397)
T ss_dssp SEEEEEETTSEEEEEESB--CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred CeEEEEcCCCEEEEEECC--CcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc
Confidence 578888899999999997 444 78899999999999999999 9 99999999999999998764432
Q ss_pred CceeEEEEcCCCceEEeecC-----CccEEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CcEEE-----Ee
Q 011436 93 ESEVSFRLKSDTNLFEILKS-----KTTVSAIEVS----PDGKQ-FSITSPDRRIRVFWFRT------GKLRR-----VY 151 (485)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~-----~~~v~~i~~s----pdg~~-lat~s~D~~I~iwd~~t------g~~~~-----~~ 151 (485)
.. ..+..+..| ...|.+++|+ |++++ |++++.|+.|++||+.+ +++++ .+
T Consensus 105 ~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 175 (397)
T 1sq9_A 105 KK---------VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 175 (397)
T ss_dssp CC---------EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred cc---------ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCccee
Confidence 11 114557777 5889999999 99999 99999999999999998 77665 66
Q ss_pred c-------cchhHHHhhhcCCCcccccccccccchhhh-------hHhhhc--cC---CCCCceEEECCCCCEEEEecCC
Q 011436 152 D-------ESLEVAQDLQRSDAPLYRLEAIDFGRRMAV-------EKEIEK--TE---TAPPSNAIFDESSNFLIYATLL 212 (485)
Q Consensus 152 ~-------~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~i~~--~~---~~~~~~i~fd~~g~~l~~~s~~ 212 (485)
. .+...+.++++++.. +-+.....|.-... ...+.. .. ...+.+++|+|+|++|++++.+
T Consensus 176 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d 254 (397)
T 1sq9_A 176 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254 (397)
T ss_dssp EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred eeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC
Confidence 2 344556666666654 22211111110000 011111 02 5567899999999999999988
Q ss_pred ---C-eEEEEcccCeEEEeecc-------------cCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEE
Q 011436 213 ---G-IKIVNLHTNKVSRILGK-------------VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLL 275 (485)
Q Consensus 213 ---~-i~v~d~~tg~~v~~~~~-------------~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 275 (485)
+ |++||+.++++++.+.+ |...+..+. + .+|+.+|
T Consensus 255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------------~-----------~~~~~~l 306 (397)
T 1sq9_A 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS-----------------F-----------NDSGETL 306 (397)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE-----------------E-----------CSSSSEE
T ss_pred CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE-----------------E-----------CCCCCEE
Confidence 6 99999999999988877 442222111 1 1678889
Q ss_pred EeeecCceEEEEecCCCC
Q 011436 276 CCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 276 ~s~~~d~~i~~f~~~~~~ 293 (485)
++++.|++|++|+-+..+
T Consensus 307 ~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp EEEETTSEEEEEETTTTE
T ss_pred EEEeCCCeEEEEEcCCCc
Confidence 999999999999876543
No 117
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.1e-22 Score=200.31 Aligned_cols=191 Identities=12% Similarity=0.073 Sum_probs=142.1
Q ss_pred EEEeCCCCeEEEEEcCC-------CCCcceEEEe-cCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011436 28 AISDRNSSFVHIYDARA-------DSNEPLISKK-VHMGPVKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 28 ~vs~s~d~~I~iwd~~~-------~~~~~~~~l~-~h~~~V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
+++++.|++|++|+... .+.+.++.+. +|..+|.+++|+| +++++++++.||.|++||+++++.
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------ 161 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ------ 161 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE------
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE------
Confidence 88899999999997641 1334455555 7889999999999 999999999999999999987432
Q ss_pred EEEcCCCceEEe-ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-EEeccchhHHHhhhcCCCccccccccc
Q 011436 98 FRLKSDTNLFEI-LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLR-RVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 98 ~~~~~~~~l~~~-~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
+..+ ..+...+.+++|+|||++||+|+.|+.|++||+++++++ ..+..
T Consensus 162 --------~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~---------------------- 211 (343)
T 3lrv_A 162 --------YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV---------------------- 211 (343)
T ss_dssp --------EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC----------------------
T ss_pred --------EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec----------------------
Confidence 2223 234557999999999999999999999999999999875 55532
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeee
Q 011436 176 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKI 255 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~ 255 (485)
.+...+.+++|+|+|++|++++.+.|++||+.++++++.+...+.... ... . ..+
T Consensus 212 -------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~--~~~---------~-~~~ 266 (343)
T 3lrv_A 212 -------------DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEF--KTG---------T-VTY 266 (343)
T ss_dssp -------------CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-------C---------C-EEE
T ss_pred -------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccc--ccc---------c-eEE
Confidence 012245699999999999999977899999999887666544221000 000 0 001
Q ss_pred eccccccccCCCCCCCCeEEEeeec-CceEEEEecC
Q 011436 256 PAAAANANESKEPFSDPTLLCCAFK-RHRIYLFSRR 290 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~d~~l~~s~~~-d~~i~~f~~~ 290 (485)
.+ .|++.+|++++. |+.+++|.-.
T Consensus 267 ~~-----------~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 267 DI-----------DDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp EE-----------CTTSSEEEEEETTTTEEEEEEEC
T ss_pred EE-----------CCCCCEEEEecCCCCcEEEEEEc
Confidence 11 278889999888 9999999764
No 118
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.6e-21 Score=194.45 Aligned_cols=201 Identities=11% Similarity=0.111 Sum_probs=151.8
Q ss_pred eEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCc--ceEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEcCCC
Q 011436 13 AVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE--PLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHT 88 (485)
Q Consensus 13 ~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~t 88 (485)
.+..+....+.++.++++++.|++|++||+. +++ .+..+.+|..+|.+++|+|+ +.+|++++.|+.|++||+.+
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 134 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEE--NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE 134 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEEE--TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred cEEEEEeCCCCCCCEEEEeccCCEEEEEEcC--CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence 3333333333347889999999999999997 454 77888899999999999999 99999999999999999976
Q ss_pred CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-------------CCCEEEEEeCCCcEEEEECCCCcEE----EEe
Q 011436 89 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-------------DGKQFSITSPDRRIRVFWFRTGKLR----RVY 151 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-------------dg~~lat~s~D~~I~iwd~~tg~~~----~~~ 151 (485)
... .....+..|...|.+++|+| ++.+|++++.|+.|++||+++++.. ..+
T Consensus 135 ~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 202 (379)
T 3jrp_A 135 NGT------------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202 (379)
T ss_dssp TSC------------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE
T ss_pred CCc------------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE
Confidence 432 22334678999999999999 7999999999999999999877532 222
Q ss_pred ccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCC---CCEEEEecCCC-eEEEEcccCe---E
Q 011436 152 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES---SNFLIYATLLG-IKIVNLHTNK---V 224 (485)
Q Consensus 152 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~---g~~l~~~s~~~-i~v~d~~tg~---~ 224 (485)
.. ....+.+++|+|+ +++|++++.++ |++||+.+++ .
T Consensus 203 ~~------------------------------------h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 203 EG------------------------------------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp CC------------------------------------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE
T ss_pred ec------------------------------------ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce
Confidence 21 1223468999999 89999999987 9999998864 1
Q ss_pred EEeecc--cCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 225 SRILGK--VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 225 v~~~~~--~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
...+.. +... +..+.+ .||+.+|++++.|+.|++|....
T Consensus 247 ~~~~~~~~~~~~-----------------v~~~~~-----------s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 247 KTLLKEEKFPDV-----------------LWRASW-----------SLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEESSSSCCSSC-----------------EEEEEE-----------CSSSCCEEEEESSSSEEEEEEEE
T ss_pred eeeeccccCCCc-----------------EEEEEE-----------cCCCCEEEEecCCCcEEEEeCCC
Confidence 122211 2211 111111 17888999999999999998753
No 119
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.89 E-value=5.2e-22 Score=196.97 Aligned_cols=233 Identities=12% Similarity=0.119 Sum_probs=160.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEec-----CCCCeEEEEEcCC----CCEEEEEeCCCcEEEEcCCCCCCCCc
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKV-----HMGPVKVMRYNPV----FDTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~-----h~~~V~~l~fspd----~~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
...+++++ .++.|+|||+. +++.+..+.. |...|.+++|+|+ +.+|++++.||.|++||+.+
T Consensus 34 ~~~~~~~~-~~~~v~vw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------ 104 (366)
T 3k26_A 34 DPLVFATV-GSNRVTLYECH--SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT------ 104 (366)
T ss_dssp SCEEEEEE-ETTEEEEEEEC--GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT------
T ss_pred CceEEEEC-CCCEEEEEEcC--CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh------
Confidence 44466655 46699999997 5666666663 5678999999999 66999999999999999987
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEe---ccchhHHHhhhcCCCccc-
Q 011436 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVY---DESLEVAQDLQRSDAPLY- 169 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~---~~~~~~i~~~~~~~~~~~- 169 (485)
+..+..+.+|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+ ..+...+..+.+++..-+
T Consensus 105 --------~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 176 (366)
T 3k26_A 105 --------MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI 176 (366)
T ss_dssp --------CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred --------ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEE
Confidence 344556889999999999999 9999999999999999999999999988 566666777776654221
Q ss_pred ---------ccccccccchhhhhHhhhc---------------------------cCCCCCceEEECCCCCEEEEecCCC
Q 011436 170 ---------RLEAIDFGRRMAVEKEIEK---------------------------TETAPPSNAIFDESSNFLIYATLLG 213 (485)
Q Consensus 170 ---------~~~~~~~g~~~~~~~~i~~---------------------------~~~~~~~~i~fd~~g~~l~~~s~~~ 213 (485)
.+++...++.. ..+.. .....+.+++|+ |++|++++.++
T Consensus 177 ~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~ 251 (366)
T 3k26_A 177 MSCGMDHSLKLWRINSKRMM---NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCEN 251 (366)
T ss_dssp EEEETTSCEEEEESCSHHHH---HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSS
T ss_pred EEecCCCCEEEEECCCCccc---cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCC
Confidence 11222111111 11111 145567899998 78999999987
Q ss_pred -eEEEEcccCeEE-EeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCC--CeEEEeeecCceEEEEec
Q 011436 214 -IKIVNLHTNKVS-RILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSD--PTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 214 -i~v~d~~tg~~v-~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~l~~s~~~d~~i~~f~~ 289 (485)
|++||+.+++.. ..+..+..... .+..+.+.. ..+..+ .. .+| +.+|++|+.|+.|++|+-
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~v~~~----------~~-s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVT--ILGRFDYSQ--CDIWYM----------RF-SMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEE--EEEEEECSS--CCSSCC----------CC-EECTTSSEEEEECTTSCEEEEEC
T ss_pred EEEEEeCCCccccccccccCCcchh--eeccccccC--CcEEEE----------EE-cCCCCCcEEEEEecCCcEEEEEC
Confidence 999999887541 11111111111 111111110 001111 11 155 889999999999999988
Q ss_pred CCCC
Q 011436 290 REPE 293 (485)
Q Consensus 290 ~~~~ 293 (485)
+..+
T Consensus 317 ~~~~ 320 (366)
T 3k26_A 317 EVED 320 (366)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 6543
No 120
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.7e-22 Score=222.91 Aligned_cols=238 Identities=16% Similarity=0.142 Sum_probs=161.2
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCc--ceEEE--e-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNE--PLISK--K-----VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP 92 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~--~~~~l--~-----~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~ 92 (485)
+|++.++++|+.|++||+||+..+... ....+ . +|...|++|+|+||+++||+++.||+|++||+.+.+..
T Consensus 444 spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~ 523 (902)
T 2oaj_A 444 AEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFY 523 (902)
T ss_dssp CSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-
T ss_pred cccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcccc
Confidence 578999999999999999999732111 11111 1 89999999999999999999999999999998765321
Q ss_pred Cc---------eeEE---EE------------cC-------CCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011436 93 ES---------EVSF---RL------------KS-------DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFW 141 (485)
Q Consensus 93 ~~---------~~~~---~~------------~~-------~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd 141 (485)
.. .+.| .+ +. -.++..+.+|...|++++||||| +||+|+.|++|+|||
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd 602 (902)
T 2oaj_A 524 SVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLID 602 (902)
T ss_dssp --------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEE
T ss_pred CccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEE
Confidence 00 0000 00 00 02366788899999999999999 999999999999999
Q ss_pred CCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEEC-----CCC---CEEEEecCCC
Q 011436 142 FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD-----ESS---NFLIYATLLG 213 (485)
Q Consensus 142 ~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd-----~~g---~~l~~~s~~~ 213 (485)
+++++++.... . . ++.......+++++|+ ||| ++|++++.++
T Consensus 603 ~~~~~~~~~~~--~---~-------------------------~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 603 RRGPAIIYMEN--I---R-------------------------EISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp TTTTEEEEEEE--G---G-------------------------GTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCCCeEEEEee--h---h-------------------------HhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 98888764311 0 0 0001123345799999 886 8999999998
Q ss_pred -eEEEEc---ccCeEEEeecccCC---ccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEE
Q 011436 214 -IKIVNL---HTNKVSRILGKVEN---NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYL 286 (485)
Q Consensus 214 -i~v~d~---~tg~~v~~~~~~~~---~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~ 286 (485)
|++||+ .+|+++.++.+|.. ....+.++.|..+..+ .+.+-...-........+++.+|+++ +..|||
T Consensus 653 tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~---~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~ 727 (902)
T 2oaj_A 653 EVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKS---SCLATIPKMQNLSKGLCIPGIVLITG--FDDIRL 727 (902)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCC---BCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEE
T ss_pred cEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCC---cccCCHHHHhccCCCCCCCeEEEEEe--ccceEE
Confidence 999999 89999988877641 1233445555422111 11100000001123344788888888 778999
Q ss_pred EecCCCCCC
Q 011436 287 FSRREPEEP 295 (485)
Q Consensus 287 f~~~~~~~~ 295 (485)
|+....+..
T Consensus 728 ~~~~~~k~~ 736 (902)
T 2oaj_A 728 ITLGKSKST 736 (902)
T ss_dssp ECTTCCCEE
T ss_pred EeCccccce
Confidence 988654433
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.88 E-value=9.2e-22 Score=202.17 Aligned_cols=243 Identities=11% Similarity=0.095 Sum_probs=171.8
Q ss_pred CCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCC--------CCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCC
Q 011436 9 FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARA--------DSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKG 79 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~--------~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg 79 (485)
-.+.+++|... ++.++++++.||.|+|||+.. +...++.++.+|...|.+|+|+|++. +|++++.||
T Consensus 129 ~~v~~l~~~p~----~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 129 GEVNRARYMPQ----NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp SCCSEEEEETT----EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred CcEEEEEECCC----CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 34455555421 367899999999999999962 11577889999999999999999998 999999999
Q ss_pred cEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---cEEEEeccch
Q 011436 80 IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTG---KLRRVYDESL 155 (485)
Q Consensus 80 ~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg---~~~~~~~~~~ 155 (485)
.|++||+.+....... -.....+.+|...|.+++|+| ++.+|++++.|+.|++||++++ +.+..+..+.
T Consensus 205 ~i~vwd~~~~~~~~~~-------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 205 TICLWDINATPKEHRV-------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp CEEEEETTSCCBGGGE-------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred eEEEEeCCCCCCCCce-------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 9999999764322110 112345678999999999999 7889999999999999999987 5677777776
Q ss_pred hHHHhhhcCCCcccccc-cccccchhhh-----hHhhh--ccCCCCCceEEECCCCC-EEEEecCCC-eEEEEccc----
Q 011436 156 EVAQDLQRSDAPLYRLE-AIDFGRRMAV-----EKEIE--KTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHT---- 221 (485)
Q Consensus 156 ~~i~~~~~~~~~~~~~~-~~~~g~~~~~-----~~~i~--~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~t---- 221 (485)
..+.++.+++..-+.+. ....|.-... ...+. ......+.+++|+|+|+ +|++++.++ |++||+.+
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 67777777764321111 1111100000 00011 12345678999999996 688888776 99999987
Q ss_pred ----------CeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCe-EEEeeecCceEEEEecC
Q 011436 222 ----------NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPT-LLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 222 ----------g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-l~~s~~~d~~i~~f~~~ 290 (485)
.+++..+.+|...++.+.+ . |+.. +|+|++.|++|++|...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---~-------------------------p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSW---N-------------------------PNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEE---C-------------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEE---C-------------------------CCCCCEEEEEECCCCEEEeEcc
Confidence 3566666666544442222 1 4544 89999999999999764
No 122
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.88 E-value=1e-21 Score=193.19 Aligned_cols=224 Identities=16% Similarity=0.066 Sum_probs=149.1
Q ss_pred EeCCCCeE--EEEEcCCCCCcceEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCce
Q 011436 30 SDRNSSFV--HIYDARADSNEPLISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 106 (485)
Q Consensus 30 s~s~d~~I--~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l 106 (485)
+|.+.|+. +++....++.++..+|+||+++|++|+|+|+ +++|+|||.|++|++||+.+.+... ..++
T Consensus 9 ~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~---------~~~~ 79 (340)
T 4aow_A 9 SGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY---------GIPQ 79 (340)
T ss_dssp -----------------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---------EEEE
T ss_pred cccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---------ceee
Confidence 34444543 3344432234566789999999999999998 5899999999999999987654322 2345
Q ss_pred EEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCc----------ccccccccc
Q 011436 107 FEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP----------LYRLEAIDF 176 (485)
Q Consensus 107 ~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~ 176 (485)
..+.+|...|.+++|+|||++|++++.|+.|++|+...+........+...+......+.. ...++....
T Consensus 80 ~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~ 159 (340)
T 4aow_A 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC
Confidence 6688999999999999999999999999999999999988876664433322222222211 111111100
Q ss_pred cchhhhhHhhhccCCCCCceEEECCCC--CEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCccee
Q 011436 177 GRRMAVEKEIEKTETAPPSNAIFDESS--NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVR 253 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~g--~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~ 253 (485)
..+. ..........+..++|++++ .++++++.++ |++||+.+++++..+.+|...++.+.+ .
T Consensus 160 ~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~---s--------- 224 (340)
T 4aow_A 160 VCKY---TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV---S--------- 224 (340)
T ss_dssp CEEE---EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE---C---------
T ss_pred CceE---EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEE---C---------
Confidence 0000 00011223345678887765 5778888876 999999999999999988865553322 1
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 254 KIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
||+.+|+||+.|++|++|+.+..+
T Consensus 225 ----------------~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 225 ----------------PDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp ----------------TTSSEEEEEETTCEEEEEETTTTE
T ss_pred ----------------CCCCEEEEEeCCCeEEEEEeccCc
Confidence 788899999999999999876543
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.88 E-value=1.5e-21 Score=198.30 Aligned_cols=227 Identities=10% Similarity=0.028 Sum_probs=142.6
Q ss_pred CeEEEEEeCC---CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCC
Q 011436 12 GAVEWVYKQG---DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPH 87 (485)
Q Consensus 12 ~~~~~~~~~~---~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~ 87 (485)
.+++|..... ..++++++|++.|++|||||++ +..++..+.+|.++|.+++|+|++. +|++++.|++|++||+.
T Consensus 140 ~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~--~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~ 217 (393)
T 4gq1_A 140 NDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT--DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWT 217 (393)
T ss_dssp EEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE--TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred EEEEEccccccccCCCCCEEEEEECCCeEEEEECC--CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECC
Confidence 3455544321 2378899999999999999997 6677778889999999999999875 89999999999999998
Q ss_pred CCCCCCcee-----------EEEEcCCCceEEeecCCccEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCcEEEEeccch
Q 011436 88 TLQFPESEV-----------SFRLKSDTNLFEILKSKTTVSAIEVS-PDGKQFSITSPDRRIRVFWFRTGKLRRVYDESL 155 (485)
Q Consensus 88 t~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~v~~i~~s-pdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~ 155 (485)
+++...... .+............+|...+.+++|+ |||+++++++.|+++++||+.+++....+..+.
T Consensus 218 t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~ 297 (393)
T 4gq1_A 218 LNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDST 297 (393)
T ss_dssp CCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------
T ss_pred CCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeec
Confidence 866543210 01111111222345788889999987 899999999999999999999999887776655
Q ss_pred hHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECC--CCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011436 156 EVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE--SSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~--~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
..+......+.. +.. .... ......|+| ++.++++++.++ |++||+.+++++..+.+|.
T Consensus 298 ~~~~~~~~~~~~----------~~~-------~~~~-~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~ 359 (393)
T 4gq1_A 298 MKLGPKNLLPNV----------QGI-------SLFP-SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG 359 (393)
T ss_dssp ------CCSCSE----------EEE-------CSSC-CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS
T ss_pred CccccEEEcccc----------ccc-------cccC-cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence 444433333220 000 0011 112334433 445777788887 9999999999887777766
Q ss_pred CccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEE
Q 011436 233 NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLF 287 (485)
Q Consensus 233 ~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f 287 (485)
..++.+.+ . ||+.+||+|++|+ +.+|
T Consensus 360 ~~V~svaf---s-------------------------pdG~~LA~as~~G-v~lv 385 (393)
T 4gq1_A 360 MPIVDFCW---H-------------------------QDGSHLAIATEGS-VLLT 385 (393)
T ss_dssp SCEEEEEE---C-------------------------TTSSEEEEEESSE-EEEE
T ss_pred CcEEEEEE---c-------------------------CCCCEEEEEeCCC-eEEE
Confidence 45553332 2 8999999999888 4444
No 124
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.8e-22 Score=201.49 Aligned_cols=215 Identities=12% Similarity=0.113 Sum_probs=150.8
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecC------CCCeEEEEEcCCC-CEEEEEeCCC---cEEEEcCCCCCCCCc
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVH------MGPVKVMRYNPVF-DTVISADDKG---IIEYWSPHTLQFPES 94 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h------~~~V~~l~fspd~-~~l~s~s~dg---~i~~Wd~~t~~~~~~ 94 (485)
+.++++++.|+.|++||++ +++++..+..| ...|.+++|+|++ .++++++.|+ .|++||+++..
T Consensus 178 ~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~---- 251 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLK--AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN---- 251 (416)
T ss_dssp TTEEEEESSSSCEEEEETT--TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT----
T ss_pred CcEEEEEcCCCCEEEEECC--CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC----
Confidence 6788999999999999997 67888888876 8899999999997 6999999999 99999998742
Q ss_pred eeEEEEcCCCceEEee-cCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccc
Q 011436 95 EVSFRLKSDTNLFEIL-KSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLE 172 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~-~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 172 (485)
..+..+. +|...|.+++|+| ++++|++++.|+.|++||+.+++++..+..|
T Consensus 252 ---------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~------------------ 304 (416)
T 2pm9_A 252 ---------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR------------------ 304 (416)
T ss_dssp ---------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS------------------
T ss_pred ---------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC------------------
Confidence 2233366 8999999999999 9999999999999999999999998887432
Q ss_pred cccccchhhhhHhhhccCCCCCceEEECCCC-CEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCc---
Q 011436 173 AIDFGRRMAVEKEIEKTETAPPSNAIFDESS-NFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDR--- 247 (485)
Q Consensus 173 ~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g-~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~--- 247 (485)
...+.+++|+|+| ++|++++.++ |++||+.+++..................+|....
T Consensus 305 ------------------~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (416)
T 2pm9_A 305 ------------------GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREE 366 (416)
T ss_dssp ------------------SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------
T ss_pred ------------------CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccc
Confidence 1234689999999 8999999987 9999998876543321100000001111111100
Q ss_pred cCcceeeeecc---cccc-ccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 248 SSKKVRKIPAA---AANA-NESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 248 ~~~~~~~~~~~---~~~~-~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.........+. .... .......+|+.+|++|+.|++|+||.-.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 367 SKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred cccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 00000000000 0000 1011123899999999999999999754
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.2e-21 Score=213.68 Aligned_cols=196 Identities=12% Similarity=0.166 Sum_probs=157.2
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
.+|++.++++++.||+|+|||+..++..++.++.+|.++|++++|+|+ +++|++++.||.|++||+.+++
T Consensus 17 ~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-------- 88 (753)
T 3jro_A 17 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-------- 88 (753)
T ss_dssp CCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE--------
T ss_pred ECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc--------
Confidence 356777888999999999999974455778889999999999999998 9999999999999999987632
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCcEE--EEeccchhHHHhhhcCCCcccccccc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPD--GKQFSITSPDRRIRVFWFRTGKLR--RVYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spd--g~~lat~s~D~~I~iwd~~tg~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
...+..+.+|...|.+++|+|+ |++|++++.|+.|++||+.++... ..+..
T Consensus 89 ----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~--------------------- 143 (753)
T 3jro_A 89 ----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA--------------------- 143 (753)
T ss_dssp ----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC---------------------
T ss_pred ----ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec---------------------
Confidence 1144557789999999999999 999999999999999999887432 11211
Q ss_pred cccchhhhhHhhhccCCCCCceEEECC-------------CCCEEEEecCCC-eEEEEcccC----eEEEeecccCCccc
Q 011436 175 DFGRRMAVEKEIEKTETAPPSNAIFDE-------------SSNFLIYATLLG-IKIVNLHTN----KVSRILGKVENNDR 236 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~-------------~g~~l~~~s~~~-i~v~d~~tg----~~v~~~~~~~~~~r 236 (485)
....+.+++|+| +|++|++++.++ |++||+.++ +++..+.+|...+.
T Consensus 144 ---------------~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 144 ---------------HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (753)
T ss_dssp ---------------CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred ---------------CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence 122346788888 599999999987 999999887 66677777775444
Q ss_pred eeeeeeccCCccCcceeeeeccccccccCCCCCCC---CeEEEeeecCceEEEEecCCC
Q 011436 237 FLRIALYQGDRSSKKVRKIPAAAANANESKEPFSD---PTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 237 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~l~~s~~~d~~i~~f~~~~~ 292 (485)
.+.+ . |+ +.+|+||+.|++|++|+.+..
T Consensus 209 ~l~~---s-------------------------p~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 209 DVAW---S-------------------------PTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp EEEE---C-------------------------CCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred EEEe---c-------------------------cCCCCCCEEEEEecCCEEEEecCCCC
Confidence 3322 1 56 889999999999999988754
No 126
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.4e-21 Score=187.05 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=163.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
++.++++++.|+.|++||+. +......+..|..+|.+++|+|++++|++++.|+.|++|++..... .
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----------~ 94 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKD--DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-----------E 94 (313)
T ss_dssp ETTEEEEEETTSEEEEEEES--SSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-----------S
T ss_pred CCCEEEEEEcCCcEEEEECC--CCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-----------C
Confidence 55678888899999999997 6778888899999999999999999999999999999998865321 3
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCC-Ccccccccccccchhh-
Q 011436 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD-APLYRLEAIDFGRRMA- 181 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~g~~~~- 181 (485)
..+..+.+|...|.+++| ++++|++++.|+.|++|| .++.+..+..+...+..+.+.+ ..-+-+.....|.-..
T Consensus 95 ~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 95 DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 445668889999999999 688999999999999999 7777777766655554443322 1000000000000000
Q ss_pred ----hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeee
Q 011436 182 ----VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIP 256 (485)
Q Consensus 182 ----~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~ 256 (485)
....+.......+.+++|+|+++ |++++.++ |++||+.++++++.+.+|...+..+.+ .
T Consensus 171 d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~---~------------ 234 (313)
T 3odt_A 171 QNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKL---L------------ 234 (313)
T ss_dssp ETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE---C------------
T ss_pred ecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEE---e------------
Confidence 01112222455678999999999 77888777 999999999999999888754443322 1
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 257 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+++ .|++++.|++|++|+.+..+
T Consensus 235 -------------~~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 235 -------------PNG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp -------------TTS-CEEEEETTSEEEEECTTTCC
T ss_pred -------------cCC-CEEEEecCCEEEEEECCCCc
Confidence 555 48899999999999876544
No 127
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.1e-21 Score=200.44 Aligned_cols=209 Identities=13% Similarity=0.041 Sum_probs=154.6
Q ss_pred CCcceE-EEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 22 DVKAGL-AISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 22 ~~~~~l-~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+|++.. +++++.|++|+|||+...++.++..+. .|...|.+++|+|++++|++++.||.|.+|++.+.+...
T Consensus 111 s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~----- 185 (450)
T 2vdu_B 111 TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK----- 185 (450)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS-----
T ss_pred cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc-----
Confidence 456666 589989999999999622466777776 677999999999999999999999999999987754322
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCcEEEEec-cchhHHHhhhcCCCcccccccc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPD---GKQFSITSPDRRIRVFWFRTGKLRRVYD-ESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spd---g~~lat~s~D~~I~iwd~~tg~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
..+..+.+|...|.+++|+|+ +++|++++.|++|++||+.+++++..+. +|
T Consensus 186 -----~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h-------------------- 240 (450)
T 2vdu_B 186 -----FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH-------------------- 240 (450)
T ss_dssp -----CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC--------------------
T ss_pred -----ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC--------------------
Confidence 022347789999999999999 9999999999999999999999877641 21
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeee------eccC--
Q 011436 175 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIA------LYQG-- 245 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s------~~~~-- 245 (485)
...+.+++|+ +|++|++++.++ |++||+.++++++.+..+. ....+... -|..
T Consensus 241 ----------------~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 302 (450)
T 2vdu_B 241 ----------------KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS-LIKPYLNDQHLAPPRFQNEN 302 (450)
T ss_dssp ----------------SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHH-HHGGGCCTTSBC--------
T ss_pred ----------------CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchh-hhhhhhhhcccccccccccc
Confidence 1234689999 999999999987 9999999999998886543 11100000 0000
Q ss_pred -CccCcceeeeeccccccccCCCCCCCCeEEEeee-cCceEEEEec
Q 011436 246 -DRSSKKVRKIPAAAANANESKEPFSDPTLLCCAF-KRHRIYLFSR 289 (485)
Q Consensus 246 -~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~-~d~~i~~f~~ 289 (485)
......+..+ .+ .+|+.+|++++ .|+.|++|.-
T Consensus 303 ~~~~~~~v~~i----------~~-~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 303 NDIIEFAVSKI----------IK-SKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp --CBCCCEEEE----------EE-CSSSSEEEEEETTCSEEEEEEE
T ss_pred cccceEEEEEE----------EE-eCCCCEEEEEECCCCeEEEEEe
Confidence 0001111111 11 26777778887 8999999987
No 128
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3e-21 Score=201.03 Aligned_cols=191 Identities=13% Similarity=0.111 Sum_probs=142.8
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCC-----CeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc
Q 011436 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG-----PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~-----~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
.++|++..+++++.||+|+|||.. .++..+. |.. .|.+++|||||++|++|+.||+|++||+.++.+...
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~----~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~ 166 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDN----KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP 166 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETT----EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred EECCCCCEEEEEeCCCcEEEEeCC----ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence 347889999999999999999964 2677777 776 499999999999999999999999999987543110
Q ss_pred eeEEEEcCCCceEEe----ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE---EEEeccchhHHHhhhcCCCc
Q 011436 95 EVSFRLKSDTNLFEI----LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL---RRVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~----~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~---~~~~~~~~~~i~~~~~~~~~ 167 (485)
. | -.+..+ .+|...|.+++||||| +|+++.|++|++||+.++++ .+++.+
T Consensus 167 ~--~-----i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-------------- 223 (588)
T 2j04_A 167 E--F-----YFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-------------- 223 (588)
T ss_dssp C--C-----EEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC--------------
T ss_pred c--c-----eeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc--------------
Confidence 0 0 012334 5678899999999999 88999999999999988773 233311
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeE-EEeecccCCccceeeeeeccCC
Q 011436 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKV-SRILGKVENNDRFLRIALYQGD 246 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~-v~~~~~~~~~~r~~~~s~~~~~ 246 (485)
.....+.+++|+ |+.||+++...|++||+.++++ ...+ +|...+. .+++.+
T Consensus 224 ---------------------~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~-gh~~~V~--~va~~~-- 275 (588)
T 2j04_A 224 ---------------------ASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT-GSLENFH--IIPLNH-- 275 (588)
T ss_dssp ---------------------CCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC-SCCSCCC--EEEETT--
T ss_pred ---------------------cccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc-CCCceEE--EEEeee--
Confidence 122346799999 7999999876699999999988 4444 4653333 333322
Q ss_pred ccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 247 RSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.+|...+++|++|+. ++|..
T Consensus 276 ----------------------s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 276 ----------------------EKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp ----------------------CSSCEEEEECSSCEE-EEEES
T ss_pred ----------------------CCCCCEEEEEcCCCC-EEEee
Confidence 177778888888888 77754
No 129
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.88 E-value=8.4e-21 Score=194.98 Aligned_cols=194 Identities=16% Similarity=0.227 Sum_probs=157.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc---------
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES--------- 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~--------- 94 (485)
++..+++|+.|++|++||+. +++++.++.+|..+|.+++| ++++|++++.||.|++||+.+++....
T Consensus 142 d~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 217 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKN--TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217 (435)
T ss_dssp CSSEEEEEESSSCEEEEESS--SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE
T ss_pred CCCEEEEEeCCCeEEEEeCC--CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE
Confidence 56688888899999999997 78889999999999999998 788999999999999999887654311
Q ss_pred -----------------eeEEEEcCCCce---EEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 011436 95 -----------------EVSFRLKSDTNL---FEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDES 154 (485)
Q Consensus 95 -----------------~~~~~~~~~~~l---~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~ 154 (485)
...|++..+..+ ..+.+|...|.+++| ++++|++++.|+.|++||++++++++++..+
T Consensus 218 ~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 295 (435)
T 1p22_A 218 HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295 (435)
T ss_dssp EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC
Confidence 233666655554 567789999999999 8899999999999999999999998887542
Q ss_pred hhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCC
Q 011436 155 LEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVEN 233 (485)
Q Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~ 233 (485)
.. .+.+++| ++++|++++.++ |++||+.++++++++.+|..
T Consensus 296 ~~------------------------------------~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~ 337 (435)
T 1p22_A 296 KR------------------------------------GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337 (435)
T ss_dssp SS------------------------------------CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred CC------------------------------------cEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence 21 2246677 578999999987 99999999999999988875
Q ss_pred ccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 234 NDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 234 ~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.++.+. .|+.+|++|+.|++|++|+.+.
T Consensus 338 ~v~~~~------------------------------~~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 338 LVRCIR------------------------------FDNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp CEEEEE------------------------------CCSSEEEEEETTSCEEEEEHHH
T ss_pred cEEEEE------------------------------ecCCEEEEEeCCCcEEEEECCC
Confidence 444221 2456799999999999998754
No 130
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.7e-21 Score=218.44 Aligned_cols=214 Identities=11% Similarity=0.082 Sum_probs=153.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++|+.|++|+|||.. ..+.+..+ .|..+|.+|+|+| +++|+|++.|++|++||++++
T Consensus 26 spdg~~lAsgs~Dg~I~lw~~~--~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~------------ 89 (902)
T 2oaj_A 26 DFTQNLLAIATVTGEVHIYGQQ--QVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ------------ 89 (902)
T ss_dssp ETTTTEEEEEETTSEEEEECST--TCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC------------
T ss_pred CCCCCEEEEEeCCCEEEEEeCC--CcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC------------
Confidence 4678899999999999999986 55554444 5889999999999 889999999999999999873
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
..+..+. |...|++++|+|+|++|++|+.|++|++||+.++++. .+.-. .+.
T Consensus 90 --~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~--~~~---------------------- 141 (902)
T 2oaj_A 90 --KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLD--NLQ---------------------- 141 (902)
T ss_dssp --SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEEC--CHH----------------------
T ss_pred --cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceec--ccc----------------------
Confidence 3344454 6678999999999999999999999999999998863 22100 000
Q ss_pred hhHhhhccCCCCCceEEECCC-CCEEEEecCCC-eEEEEcccCeEEEeecccCCccce---eeeeeccCCccCcceeeee
Q 011436 182 VEKEIEKTETAPPSNAIFDES-SNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRF---LRIALYQGDRSSKKVRKIP 256 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~-g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~---~~~s~~~~~~~~~~~~~~~ 256 (485)
............+.+++|+|+ ++.|++++.++ | +||+.++++++++..|...... ....... .....+..+.
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~h~~~V~~v~ 218 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNE--KRTPKVIQSL 218 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTS--CBCCCEEEEE
T ss_pred ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccc--ccCCCeEEEE
Confidence 000000123345789999996 57889999888 8 9999999999998776211000 0000000 0011122222
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 257 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+ .||+.+|+||+.|++|++|+.+..+
T Consensus 219 f-----------spdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 219 Y-----------HPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp E-----------CTTSSEEEEEETTCCEEEEETTTCC
T ss_pred E-----------cCCCCEEEEEECCCeEEEEECCCCc
Confidence 2 2889999999999999999987654
No 131
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.88 E-value=2.9e-21 Score=191.17 Aligned_cols=189 Identities=15% Similarity=0.199 Sum_probs=146.0
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCc-ceEEEecCCCCeEEEE------EcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011436 25 AGLAISDRNSSFVHIYDARADSNE-PLISKKVHMGPVKVMR------YNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~-~~~~l~~h~~~V~~l~------fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
+.++++++.|+.|++||+. +.+ ++..+.+|...|.++. |+|++++|++++.|+.|++||+.+.+.
T Consensus 80 ~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~------ 151 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLE--APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD------ 151 (357)
T ss_dssp TCCEEEEETTSCEEEECTT--SCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS------
T ss_pred CceEEEecCCCeEEEEeCC--CCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC------
Confidence 5788888899999999997 555 8899999999999995 478999999999999999999987542
Q ss_pred EEEcCCCceEEeecCC----ccEEEEE----EcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccc
Q 011436 98 FRLKSDTNLFEILKSK----TTVSAIE----VSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY 169 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~----~~v~~i~----~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~ 169 (485)
.+..+..|. ..+.+++ |+|++++|++++.|+.|++||++++++.....
T Consensus 152 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------- 207 (357)
T 3i2n_A 152 -------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN----------------- 207 (357)
T ss_dssp -------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-----------------
T ss_pred -------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-----------------
Confidence 233344433 3788888 78999999999999999999999998754331
Q ss_pred ccccccccchhhhhHhhhccCCCCCceEEECC---CCCEEEEecCCC-eEEEEcccCeEEEeec-----ccCCccceeee
Q 011436 170 RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE---SSNFLIYATLLG-IKIVNLHTNKVSRILG-----KVENNDRFLRI 240 (485)
Q Consensus 170 ~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~---~g~~l~~~s~~~-i~v~d~~tg~~v~~~~-----~~~~~~r~~~~ 240 (485)
....+.+++|+| ++++|++++.++ |++||+.+++++..+. +|...+..+.+
T Consensus 208 --------------------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (357)
T 3i2n_A 208 --------------------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267 (357)
T ss_dssp --------------------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred --------------------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence 112346899999 999999999987 9999999877655443 44433222111
Q ss_pred eeccCCccCcceeeeeccccccccCCCCCCCCe-EEEeeecCceEEEEecCCCC
Q 011436 241 ALYQGDRSSKKVRKIPAAAANANESKEPFSDPT-LLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-l~~s~~~d~~i~~f~~~~~~ 293 (485)
. |+.. +|++|+.|+.|++|+-+.+.
T Consensus 268 ---~-------------------------~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 268 ---L-------------------------PQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp ---E-------------------------TTEEEEEEEEETTSEEEEEEEECCS
T ss_pred ---C-------------------------CCCCcEEEEEeCCCcEEEeecCCCc
Confidence 1 6666 89999999999999887543
No 132
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.88 E-value=8.6e-21 Score=192.78 Aligned_cols=185 Identities=9% Similarity=0.038 Sum_probs=149.5
Q ss_pred EEEeCCCCeEEEEEcCCCCCcceEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCce
Q 011436 28 AISDRNSSFVHIYDARADSNEPLISKKV-HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 106 (485)
Q Consensus 28 ~vs~s~d~~I~iwd~~~~~~~~~~~l~~-h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l 106 (485)
+++++.|+.|++||+. +++....+.. |...|.+++|+|++++|++++.||.|++||+.+ +..+
T Consensus 106 l~~~~~d~~v~lw~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--------------~~~~ 169 (401)
T 4aez_A 106 VVAVALERNVYVWNAD--SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES--------------QTKL 169 (401)
T ss_dssp EEEEEETTEEEEEETT--TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--------------CCEE
T ss_pred EEEEECCCeEEEeeCC--CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC--------------CeEE
Confidence 4455579999999997 6777777764 899999999999999999999999999999977 4455
Q ss_pred EEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHh
Q 011436 107 FEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR-TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE 185 (485)
Q Consensus 107 ~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~-tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~ 185 (485)
..+.+|...|.+++| ++++|++++.|+.|++||++ .++.+..+.+|
T Consensus 170 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------------------- 216 (401)
T 4aez_A 170 RTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH------------------------------- 216 (401)
T ss_dssp EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC-------------------------------
T ss_pred EEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCC-------------------------------
Confidence 668899999999999 56899999999999999998 45555555331
Q ss_pred hhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccccccc
Q 011436 186 IEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANE 264 (485)
Q Consensus 186 i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 264 (485)
...+.+++|+|+|++|++++.++ |++||+.+++++..+..|...++.+.++-
T Consensus 217 -----~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p---------------------- 269 (401)
T 4aez_A 217 -----SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP---------------------- 269 (401)
T ss_dssp -----SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECT----------------------
T ss_pred -----CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECC----------------------
Confidence 12346899999999999999987 99999999999999888775555443311
Q ss_pred CCCCCCCCeEEEeee--cCceEEEEecCCCC
Q 011436 265 SKEPFSDPTLLCCAF--KRHRIYLFSRREPE 293 (485)
Q Consensus 265 ~~~~~~d~~l~~s~~--~d~~i~~f~~~~~~ 293 (485)
....++++|+ .|++|++|+.+..+
T Consensus 270 -----~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 270 -----WQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp -----TSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred -----CCCCEEEEecCCCCCEEEEEECCCCC
Confidence 2356778866 79999999876543
No 133
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.88 E-value=3.9e-21 Score=196.83 Aligned_cols=232 Identities=9% Similarity=0.145 Sum_probs=151.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEE-------EecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLIS-------KKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPE 93 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~-------l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~ 93 (485)
+|++.+++++ .|++|+|||++. ...++.. +.+|...|.+++|+|++ ++|++++.||.|++||+++++...
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEI-TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTE-EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCCEEEEe-CCCeEEEEECCC-CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 4567788888 799999999961 2334442 45899999999999998 999999999999999998755321
Q ss_pred ceeEEEEcCCCceEEeecCCc------------cEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccchhHHHh
Q 011436 94 SEVSFRLKSDTNLFEILKSKT------------TVSAIEVSPDGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQD 160 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~------------~v~~i~~spdg~~lat~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~ 160 (485)
..+..+..|.. .|.+++|+|+|++|++++. +.|++||+++ ++++.++..+......
T Consensus 264 ----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~ 332 (447)
T 3dw8_B 264 ----------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSK 332 (447)
T ss_dssp ----------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred ----------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccc
Confidence 11344556654 8999999999999999999 9999999997 8877777654322110
Q ss_pred hhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceee
Q 011436 161 LQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLR 239 (485)
Q Consensus 161 ~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~ 239 (485)
+. .............++|+|+|++|++++.++ |++||+.+++++... .+....+...
T Consensus 333 l~---------------------~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~ 390 (447)
T 3dw8_B 333 LC---------------------SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLE-ASRENNKPRT 390 (447)
T ss_dssp HH---------------------HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEE-CCSTTCCTTC
T ss_pred cc---------------------ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeee-eccccccccc
Confidence 00 000000001123689999999999999998 999999999987433 3321222000
Q ss_pred e-----eeccCCccCcceeeeecccccc-ccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 240 I-----ALYQGDRSSKKVRKIPAAAANA-NESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 240 ~-----s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
. .+-.+...........+.-... ....+. |++.+||+|+.++ +|+|..+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 391 VLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWH-PKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp BCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEEC-SSSSEEEEECSSC-EEEEECC
T ss_pred ccCCccccccCCcccccccccccccCCceeEEEEC-CCCCEEEEEecce-eeeeccc
Confidence 0 0011111111111111111111 223344 8888899998876 9999865
No 134
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=193.16 Aligned_cols=197 Identities=15% Similarity=0.154 Sum_probs=144.6
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCc-ceEEEecCCC----CeEEEE----EcCCCCEEEEEeCCCcEEEEcCCCCC
Q 011436 20 QGDVKAGLAISDRNSSFVHIYDARADSNE-PLISKKVHMG----PVKVMR----YNPVFDTVISADDKGIIEYWSPHTLQ 90 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~-~~~~l~~h~~----~V~~l~----fspd~~~l~s~s~dg~i~~Wd~~t~~ 90 (485)
..++++.++++++.|++|++||++ +.. ++..+..|.. .|.+++ |+|+++++++++.|+.|++||+++++
T Consensus 124 ~~s~~~~~l~~~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 124 GIGEGAPEIVTGSRDGTVKVWDPR--QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA 201 (357)
T ss_dssp GCC-CCCEEEEEETTSCEEEECTT--SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE
T ss_pred ccCCCccEEEEEeCCCeEEEEeCC--CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc
Confidence 346778889999999999999997 444 7888876655 899998 78999999999999999999997633
Q ss_pred CCCceeEEEEcCCCceEEeecCCccEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCc
Q 011436 91 FPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP---DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp---dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~ 167 (485)
. .....|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+...
T Consensus 202 ~---------------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------- 253 (357)
T 3i2n_A 202 L---------------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV------------- 253 (357)
T ss_dssp E---------------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE-------------
T ss_pred e---------------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee-------------
Confidence 2 22456788999999999 9999999999999999999876543322100
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEcccCeE-------------------EE
Q 011436 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTNKV-------------------SR 226 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~tg~~-------------------v~ 226 (485)
........+.+++|+|+|+ +|++++.++ |++||+.+++. +.
T Consensus 254 ------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 254 ------------------SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp ------------------EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred ------------------ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 0001223457899999999 899999987 99999987643 33
Q ss_pred eecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEE-eeecCceEEEEecCCC
Q 011436 227 ILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLC-CAFKRHRIYLFSRREP 292 (485)
Q Consensus 227 ~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~-s~~~d~~i~~f~~~~~ 292 (485)
.+.+|...+. .+.+ . +|..+|+ |++.|++|++|+-...
T Consensus 316 ~~~~~~~~v~-----------------~~~~----------s-~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 316 NVTLSTQPIS-----------------SLDW----------S-PDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEECCSSCEE-----------------EEEE----------C-SSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccCCCCee-----------------EEEE----------c-CCCCeEEEEecCCCcEEEEECCCc
Confidence 3333332222 1111 1 6666666 9999999999987643
No 135
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.87 E-value=1e-21 Score=193.66 Aligned_cols=230 Identities=10% Similarity=-0.015 Sum_probs=161.1
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCc---ceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcC-CCCCCCCceeE
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSNE---PLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSP-HTLQFPESEVS 97 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~---~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~-~t~~~~~~~~~ 97 (485)
|++.++++++.|+.|+|||+. +.. ++..+.+|..+|.+++|+|+++ +|++++.||.|++||+ .+.+
T Consensus 21 ~~~~~l~~~~~d~~v~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~------- 91 (342)
T 1yfq_A 21 PSKSLLLITSWDGSLTVYKFD--IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS------- 91 (342)
T ss_dssp GGGTEEEEEETTSEEEEEEEE--TTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS-------
T ss_pred CCCCEEEEEcCCCeEEEEEeC--CCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc-------
Confidence 467788888899999999997 333 3556669999999999999999 9999999999999998 7632
Q ss_pred EEEcCCCceEEeec--CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CcEEEEeccchhHHHhhhcCCC
Q 011436 98 FRLKSDTNLFEILK--SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT---------GKLRRVYDESLEVAQDLQRSDA 166 (485)
Q Consensus 98 ~~~~~~~~l~~~~~--~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t---------g~~~~~~~~~~~~i~~~~~~~~ 166 (485)
...+.+ |...|.+++|+| +.+|++++.|+.|++||+++ +++++++. +...+.++++++.
T Consensus 92 --------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 92 --------FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp --------EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred --------eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 344677 999999999999 99999999999999999987 66655554 3333444444443
Q ss_pred ccc--------ccccccc-cchhhhhHhhhccCCCCCceEEECC-CCCEEEEecCCC-eEEEEcccC------eEEEeec
Q 011436 167 PLY--------RLEAIDF-GRRMAVEKEIEKTETAPPSNAIFDE-SSNFLIYATLLG-IKIVNLHTN------KVSRILG 229 (485)
Q Consensus 167 ~~~--------~~~~~~~-g~~~~~~~~i~~~~~~~~~~i~fd~-~g~~l~~~s~~~-i~v~d~~tg------~~v~~~~ 229 (485)
.++ .+.+... +... ...........+.+++|+| +|++|++++.++ |++|+...+ +.+..+.
T Consensus 162 ~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 162 RLIVGMNNSQVQWFRLPLCEDDN--GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCC--CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred cEEEEeCCCeEEEEECCcccccc--ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 211 1111111 0000 0001112344568999999 999999999988 999999876 6667776
Q ss_pred ccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011436 230 KVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 230 ~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
.|..... +......+..+.+ .||+.+|++|+.|++|++|+.+..
T Consensus 240 ~~~~~~~--------~~~~~~~i~~~~~-----------s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 240 CHRLNLK--------DTNLAYPVNSIEF-----------SPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CCCCCTT--------CCSSCCCEEEEEE-----------CTTTCCEEEEETTSCEEEEETTTT
T ss_pred ccccccc--------ccccceeEEEEEE-----------cCCCCEEEEecCCceEEEEcCccH
Confidence 6642100 0000111222211 178888999999999999987643
No 136
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.2e-21 Score=189.20 Aligned_cols=204 Identities=15% Similarity=0.127 Sum_probs=151.8
Q ss_pred CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCC
Q 011436 47 NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 126 (485)
Q Consensus 47 ~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~ 126 (485)
......+.+|.++|++++|+|++++|++++.||.|++||+.+ +..+..+.+|...|.+++|+|+++
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~--------------~~~~~~~~~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN--------------GERLGTLDGHTGTIWSIDVDCFTK 87 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT--------------CCEEEEECCCSSCEEEEEECTTSS
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--------------chhhhhhhhcCCcEEEEEEcCCCC
Confidence 334566889999999999999999999999999999999877 445566889999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc---------------ccccccchhhh--------h
Q 011436 127 QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL---------------EAIDFGRRMAV--------E 183 (485)
Q Consensus 127 ~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~---------------~~~~~g~~~~~--------~ 183 (485)
+|++++.|+.|++||+.+++++..+. +...+..+.+++..-+-+ .....+..... .
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 99999999999999999999998886 333444555554321111 11111110000 0
Q ss_pred Hhhhc-cCCCCCceEEECCCCCEEEEecCCC-eEEEEccc-CeEEEeecccCCccceeeeeeccCCccCcceeeeecccc
Q 011436 184 KEIEK-TETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT-NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAA 260 (485)
Q Consensus 184 ~~i~~-~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t-g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~ 260 (485)
..+.. .....+.+++|+|+|++|++++.++ |++||+.+ +++++.+..|...+..+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-------------------- 226 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF-------------------- 226 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEE--------------------
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEE--------------------
Confidence 00000 1112567899999999999999987 99999998 7888888877644443222
Q ss_pred ccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 261 NANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 261 ~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.+|+.+|++++.|++|++|+.+..+
T Consensus 227 --------~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 227 --------SPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp --------CTTSSEEEEEETTSEEEEEETTTCC
T ss_pred --------CCCCCEEEEecCCceEEEEECCCCc
Confidence 1678889999999999999876543
No 137
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.87 E-value=1.5e-20 Score=200.13 Aligned_cols=192 Identities=11% Similarity=0.091 Sum_probs=158.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCC------CCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEcCCCCCCCC
Q 011436 24 KAGLAISDRNSSFVHIYDARAD------SNEPLISKKVHMGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQFPE 93 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~------~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d----g~i~~Wd~~t~~~~~ 93 (485)
++.++++++.|++|+|||+..+ ....++.+.+|..+|.+++|+|++++|++++.+ +.|.+||.
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~------- 149 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS------- 149 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-------
T ss_pred CCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-------
Confidence 7788999999999999999522 236678888999999999999999999999988 79999984
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccc
Q 011436 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLE 172 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 172 (485)
+..+..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++++..+..+..
T Consensus 150 ---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---------------- 204 (615)
T 1pgu_A 150 ---------GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK---------------- 204 (615)
T ss_dssp ---------CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC----------------
T ss_pred ---------CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC----------------
Confidence 345566889999999999999998 899999999999999999999888754211
Q ss_pred cccccchhhhhHhhhccCCCCCceEEECCC-CCEEEEecCCC-eEEEEcccCeEEEee-c---ccCCccceeeeeeccCC
Q 011436 173 AIDFGRRMAVEKEIEKTETAPPSNAIFDES-SNFLIYATLLG-IKIVNLHTNKVSRIL-G---KVENNDRFLRIALYQGD 246 (485)
Q Consensus 173 ~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~-g~~l~~~s~~~-i~v~d~~tg~~v~~~-~---~~~~~~r~~~~s~~~~~ 246 (485)
....+.+++|+|+ |++|++++.++ |++||+.++++++.+ . +|...+..+.++
T Consensus 205 -----------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~----- 262 (615)
T 1pgu_A 205 -----------------QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL----- 262 (615)
T ss_dssp -----------------TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-----
T ss_pred -----------------CCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-----
Confidence 0013468999999 99999999887 999999999999988 4 565444433332
Q ss_pred ccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 247 RSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
++.+|++++.|+.|++|+.+..+
T Consensus 263 ------------------------~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 263 ------------------------DSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp ------------------------SSSEEEEEETTSEEEEEETTTTE
T ss_pred ------------------------CCCEEEEEcCCCcEEEEECCCCc
Confidence 45678999999999999887544
No 138
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2e-20 Score=181.49 Aligned_cols=182 Identities=14% Similarity=0.177 Sum_probs=148.0
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
+.++++++.|++|++||. ...+..+..|..+|.++.|+| +++++++++.|+.|++||. .
T Consensus 114 ~~~l~~~~~d~~i~~~d~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~----------------~ 173 (313)
T 3odt_A 114 DGVVISGSWDKTAKVWKE----GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN----------------D 173 (313)
T ss_dssp TTEEEEEETTSEEEEEET----TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET----------------T
T ss_pred CCEEEEEeCCCCEEEEcC----CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec----------------C
Confidence 457888889999999993 567888899999999999998 8999999999999999994 2
Q ss_pred CceEEeec-CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011436 104 TNLFEILK-SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 104 ~~l~~~~~-~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
..+..+.. |...+.+++|+|++. |++++.|+.|++||++++++++.+..+.
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------------------- 225 (313)
T 3odt_A 174 KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--------------------------- 225 (313)
T ss_dssp EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS---------------------------
T ss_pred ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC---------------------------
Confidence 34444666 888999999999998 9999999999999999999988774321
Q ss_pred hHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccc
Q 011436 183 EKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAAN 261 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~ 261 (485)
..+.+++|+|+|+ |++++.++ |++||+.++++++.+..|...+..+.+ .
T Consensus 226 ---------~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~---~----------------- 275 (313)
T 3odt_A 226 ---------SFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC---M----------------- 275 (313)
T ss_dssp ---------SCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEE---C-----------------
T ss_pred ---------ceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEE---c-----------------
Confidence 2346899999995 77777776 999999999999999887644332222 1
Q ss_pred cccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 262 ANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 262 ~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+|+. +++++.|++|++|+.+..+
T Consensus 276 --------~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 276 --------SNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp --------TTSC-EEEEETTSCEEEEESCGGG
T ss_pred --------cCCC-EEEEeCCCcEEEEeCCCCc
Confidence 5555 5579999999999876543
No 139
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.86 E-value=2.4e-20 Score=191.61 Aligned_cols=195 Identities=16% Similarity=0.181 Sum_probs=156.2
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC----------
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE---------- 93 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~---------- 93 (485)
++.++++|+.||+|++||+. +++++.++.+|...|.+++|++ ..+++++.||.|++||+.+.+...
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 257 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVN--TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257 (435)
T ss_dssp CSSEEEEEETTSCEEEEESS--SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS
T ss_pred CCCEEEEEcCCCeEEEEECC--CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCC
Confidence 45688899999999999997 7888999999999999999974 599999999999999988765431
Q ss_pred -------------------ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 011436 94 -------------------SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDES 154 (485)
Q Consensus 94 -------------------~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~ 154 (485)
....|++..+..+..+.+|...|.+++| ++.++++|+.|+.|++||++++++++++..|
T Consensus 258 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 335 (435)
T 1p22_A 258 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH 335 (435)
T ss_dssp CEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC
Confidence 0223677777788889999999999999 5789999999999999999999999888542
Q ss_pred hhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCe---------E
Q 011436 155 LEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNK---------V 224 (485)
Q Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~---------~ 224 (485)
.. .+.+++| ++++|++++.++ |++||+.+++ +
T Consensus 336 ~~------------------------------------~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 377 (435)
T 1p22_A 336 EE------------------------------------LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377 (435)
T ss_dssp SS------------------------------------CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred cC------------------------------------cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence 21 2346777 789999999988 9999998877 7
Q ss_pred EEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011436 225 SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 225 v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
++.+.+|...+..+.+ |+..|+||+.|++|++|+-..+
T Consensus 378 ~~~~~~h~~~v~~l~~------------------------------~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 378 LRTLVEHSGRVFRLQF------------------------------DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEEECCCSSCCCCEEE------------------------------CSSCEEECCSSSEEEEEC----
T ss_pred eeeccCCCCCeEEEEe------------------------------CCCEEEEEeCCCEEEEEECCCC
Confidence 7777777644332222 3456899999999999987543
No 140
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.86 E-value=1.5e-20 Score=184.03 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=131.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCC-------cceEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEcCCCCCCCCc
Q 011436 24 KAGLAISDRNSSFVHIYDARADSN-------EPLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~-------~~~~~l~~h~~~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
++.++++++.|++|++||++.+.. +++..+.+|..+|.+++|+|+ +++|++++.||.|++||+.+.+....
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS 149 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence 477889999999999999973211 557888899999999999999 99999999999999999887664321
Q ss_pred -------------------------------------------eeEEEE-cCCC--ceEEeecCCccEEEEEEcCCC---
Q 011436 95 -------------------------------------------EVSFRL-KSDT--NLFEILKSKTTVSAIEVSPDG--- 125 (485)
Q Consensus 95 -------------------------------------------~~~~~~-~~~~--~l~~~~~~~~~v~~i~~spdg--- 125 (485)
.+.|.. ..+. .+..+.+|...|.+++|+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence 000111 1122 255677899999999999998
Q ss_pred -CEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccc--------------ccccccccchhhhhHhhhccC
Q 011436 126 -KQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLY--------------RLEAIDFGRRMAVEKEIEKTE 190 (485)
Q Consensus 126 -~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~g~~~~~~~~i~~~~ 190 (485)
++|++++.|+.|++||+.++........................ .+......+. ...+ ...
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~h 305 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL---LSEH-DDH 305 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEE---EEEE-CTT
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE---EEEE-ecc
Confidence 89999999999999999987665444332222111111111000 0000000000 0011 123
Q ss_pred CCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEe
Q 011436 191 TAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRI 227 (485)
Q Consensus 191 ~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~ 227 (485)
...+.+++|+|+|++|++++.++ |++||+.+++.++.
T Consensus 306 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 306 NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 44578999999999999999988 99999998865443
No 141
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.86 E-value=1.2e-20 Score=218.20 Aligned_cols=248 Identities=17% Similarity=0.149 Sum_probs=184.0
Q ss_pred EEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC
Q 011436 14 VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE 93 (485)
Q Consensus 14 ~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~ 93 (485)
+..+....+.+..++++++.|++|++||+. ++.++.++.+|..+|++++|+|+++++++++.||.|++||+.+++...
T Consensus 702 v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~--~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLN--QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779 (1249)
T ss_dssp EEEEEECSSSSCCEEEEEETTSCEEEEETT--SSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred EEEEEEecCCCceEEEEEeCCCeEEEEECC--CcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccc
Confidence 333344444467789999999999999997 788899999999999999999999999999999999999986643211
Q ss_pred ----------------------------------------ceeEEEEcCCCceEEee-cCCccEEEEEEcCCCCEEEEEe
Q 011436 94 ----------------------------------------SEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITS 132 (485)
Q Consensus 94 ----------------------------------------~~~~~~~~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~s 132 (485)
....|+...+..+..+. +|...+.+++|+|+|+++++++
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 859 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence 01234445555555554 7888999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh-----------------------------
Q 011436 133 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE----------------------------- 183 (485)
Q Consensus 133 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~----------------------------- 183 (485)
.|+.|++||+.+++++..+.+|...+..+.+++..-+-+.....|.-..+.
T Consensus 860 ~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLA 939 (1249)
T ss_dssp SSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEE
Confidence 999999999999999999988887777777766532211111111000000
Q ss_pred --------------HhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCcc
Q 011436 184 --------------KEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRS 248 (485)
Q Consensus 184 --------------~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~ 248 (485)
..+.......+.+++|+|+|+++++++.++ |++||+.+++++..+.+|...++.+.+
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~-------- 1011 (1249)
T 3sfz_A 940 VDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF-------- 1011 (1249)
T ss_dssp EESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEE--------
T ss_pred ecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEE--------
Confidence 000011233467899999999999999987 999999999999998888755554433
Q ss_pred CcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 249 SKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
.+|+..++|++.|++|++|+-..
T Consensus 1012 --------------------s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 1012 --------------------TADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp --------------------CSSSSCEEEECSSSBEEEEETTT
T ss_pred --------------------CCCCCEEEEEcCCCEEEEEECCC
Confidence 15666778888888888887654
No 142
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.86 E-value=1.9e-20 Score=192.60 Aligned_cols=182 Identities=15% Similarity=0.170 Sum_probs=145.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
++.++++++.|++|++||+. +++++.++.+|..+|.+++|+ ++++++++.||.|++||+.+ +
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~--------------~ 189 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAV--TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET--------------G 189 (445)
T ss_dssp ETTEEEEEETTSCEEEEETT--TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--------------T
T ss_pred cCCEEEEEECCCcEEEEECC--CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc--------------C
Confidence 45688889999999999997 788899999999999999998 57999999999999999987 4
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh
Q 011436 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 183 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 183 (485)
..+..+.+|...|.+++|+ +..+++++.|++|++||+.+++++..+..+..
T Consensus 190 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--------------------------- 240 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA--------------------------- 240 (445)
T ss_dssp EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSS---------------------------
T ss_pred cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc---------------------------
Confidence 4556688999999999995 67899999999999999999999888754221
Q ss_pred HhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccccc
Q 011436 184 KEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANA 262 (485)
Q Consensus 184 ~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~ 262 (485)
.+.+++| +|++|++++.++ |++||+.++++++.+.+|...+..+.+
T Consensus 241 ---------~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---------------------- 287 (445)
T 2ovr_B 241 ---------AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---------------------- 287 (445)
T ss_dssp ---------CEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE----------------------
T ss_pred ---------cEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE----------------------
Confidence 2246666 677888888776 888888888888888777643332211
Q ss_pred ccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 263 NESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 263 ~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
|+..+++|+.|+.|++|+.+..+
T Consensus 288 --------~~~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 288 --------DGIHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp --------CSSEEEEEETTSCEEEEETTTCC
T ss_pred --------CCCEEEEEeCCCeEEEEECCCCC
Confidence 34457788888888888766544
No 143
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.86 E-value=1e-20 Score=185.84 Aligned_cols=147 Identities=10% Similarity=0.013 Sum_probs=111.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCC---CCeEEEEEcCCCCEE------------EEEeCCCcEEEEcCCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHM---GPVKVMRYNPVFDTV------------ISADDKGIIEYWSPHT 88 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~---~~V~~l~fspd~~~l------------~s~s~dg~i~~Wd~~t 88 (485)
++.+++|++.|++|+|||++ +++++++|.+|. ..|.+++|+|++.++ +|++.|++|++||..+
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~--TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLK--TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp STTEEEEEETTSEEEEEETT--TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CCceEEEecCCCcEEEEECC--CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 56789999999999999998 889999998654 467788999999976 5688899999999887
Q ss_pred CCCCCceeEEEEcCCCceEEe-ecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCc
Q 011436 89 LQFPESEVSFRLKSDTNLFEI-LKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~ 167 (485)
++.... + ...+ .+|...+.+.+++ |..+|+++.|++|||||+.+|++++++.+|..
T Consensus 270 gk~l~v---~-------~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~----------- 326 (356)
T 2w18_A 270 TLSVGV---M-------LYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSD----------- 326 (356)
T ss_dssp TEEEEE---E-------EECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC-------------
T ss_pred CEEEEE---E-------EeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-----------
Confidence 543211 0 0001 2555555555554 88999999999999999999999999864221
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEc
Q 011436 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNL 219 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~ 219 (485)
..+..++|+|||++|++|+.|+ |||||.
T Consensus 327 ------------------------~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 327 ------------------------QHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ------------------------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ------------------------CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 1224689999999999999997 999985
No 144
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.2e-20 Score=194.92 Aligned_cols=159 Identities=11% Similarity=0.016 Sum_probs=126.3
Q ss_pred CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEcCC--CCCCCCceeEEEEcCCCceEEee--cCCccEEEEEEcCCCCEEEE
Q 011436 56 HMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPH--TLQFPESEVSFRLKSDTNLFEIL--KSKTTVSAIEVSPDGKQFSI 130 (485)
Q Consensus 56 h~~~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~--t~~~~~~~~~~~~~~~~~l~~~~--~~~~~v~~i~~spdg~~lat 130 (485)
|.+.|.+++|+|++++| ++++.||.|++||+. ++ ..+..+. .|...|.+++|+|+|++|++
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--------------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 166 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--------------NVLKLRKRFCFSKRPNAISIAEDDTTVII 166 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--------------SCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--------------ceeeeeecccCCCCceEEEEcCCCCEEEE
Confidence 44479999999999986 899999999999987 53 3344454 56788999999999999999
Q ss_pred EeCCCcEEEEECCCCcEEE----EeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCC---C
Q 011436 131 TSPDRRIRVFWFRTGKLRR----VYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES---S 203 (485)
Q Consensus 131 ~s~D~~I~iwd~~tg~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~---g 203 (485)
++.|+.|++||+.+++... .+. .....+.+++|+|+ |
T Consensus 167 ~~~~g~v~~~~~~~~~~~~~~~~~~~------------------------------------~h~~~v~~~~~sp~~~~~ 210 (450)
T 2vdu_B 167 ADKFGDVYSIDINSIPEEKFTQEPIL------------------------------------GHVSMLTDVHLIKDSDGH 210 (450)
T ss_dssp EETTSEEEEEETTSCCCSSCCCCCSE------------------------------------ECSSCEEEEEEEECTTSC
T ss_pred EeCCCcEEEEecCCcccccccceeee------------------------------------cccCceEEEEEcCCCCCC
Confidence 9999999999998876432 111 11234578999999 9
Q ss_pred CEEEEecCCC-eEEEEcccCeEEEe-ecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecC
Q 011436 204 NFLIYATLLG-IKIVNLHTNKVSRI-LGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR 281 (485)
Q Consensus 204 ~~l~~~s~~~-i~v~d~~tg~~v~~-~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d 281 (485)
++|++++.++ |++||+.+++++.. +.+|...++.+.++ |+.+|+||+.|
T Consensus 211 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-----------------------------d~~~l~s~~~d 261 (450)
T 2vdu_B 211 QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-----------------------------KDYLLLSAGGD 261 (450)
T ss_dssp EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-----------------------------STTEEEEEESS
T ss_pred cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-----------------------------CCCEEEEEeCC
Confidence 9999999987 99999999998877 55776555544442 45678999999
Q ss_pred ceEEEEecCCCC
Q 011436 282 HRIYLFSRREPE 293 (485)
Q Consensus 282 ~~i~~f~~~~~~ 293 (485)
++|++|+-+..+
T Consensus 262 ~~v~vwd~~~~~ 273 (450)
T 2vdu_B 262 DKIFAWDWKTGK 273 (450)
T ss_dssp SEEEEEETTTCC
T ss_pred CeEEEEECCCCc
Confidence 999999876544
No 145
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.86 E-value=1.3e-20 Score=200.53 Aligned_cols=197 Identities=12% Similarity=0.071 Sum_probs=156.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCC----cceEEEecCCCC-eEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSN----EPLISKKVHMGP-VKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~----~~~~~l~~h~~~-V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
+|++.++++++ ++.|+|||+. ++ +++..+.+|... |++++|+| ++++|++++.||.|++||+.+++....
T Consensus 27 spdg~~l~~~~-~~~v~v~~~~--~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~ 103 (615)
T 1pgu_A 27 DPTTNAIAYPC-GKSAFVRCLD--DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 103 (615)
T ss_dssp ETTTTEEEEEE-TTEEEEEECC--SSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTE
T ss_pred CCCCCEEEEec-CCeEEEEECC--CCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccc
Confidence 45666777776 7899999997 66 788999999999 99999999 999999999999999999864311000
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccc
Q 011436 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD----RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYR 170 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D----~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~ 170 (485)
+ ....+..+..|...|.+++|+|||++|++++.| +.|++|| +++.+..+..|
T Consensus 104 ---~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~---------------- 159 (615)
T 1pgu_A 104 ---V---EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH---------------- 159 (615)
T ss_dssp ---E---EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSC----------------
T ss_pred ---c---cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecC----------------
Confidence 0 023455678899999999999999999999988 6888888 67776666432
Q ss_pred cccccccchhhhhHhhhccCCCCCceEEECCCCC-EEEEecCCC-eEEEEcccCeEEEeecccCC---ccceeeeeeccC
Q 011436 171 LEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHTNKVSRILGKVEN---NDRFLRIALYQG 245 (485)
Q Consensus 171 ~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~---~~r~~~~s~~~~ 245 (485)
...+.+++|+|+|+ +|++++.++ |++||+.++++++.+.+|.. .+..+. |.
T Consensus 160 --------------------~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~---~~- 215 (615)
T 1pgu_A 160 --------------------SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE---FS- 215 (615)
T ss_dssp --------------------SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE---EC-
T ss_pred --------------------CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE---EC-
Confidence 12346899999998 799999887 99999999999999988874 333222 21
Q ss_pred CccCcceeeeeccccccccCCCCCCC-CeEEEeeecCceEEEEecCCCC
Q 011436 246 DRSSKKVRKIPAAAANANESKEPFSD-PTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
|| +.+|++++.|+.|++|+-+..+
T Consensus 216 ------------------------~~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 216 ------------------------PDSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp ------------------------STTCCEEEEEETTCCEEEEETTTCC
T ss_pred ------------------------CCCCCEEEEEeCCCeEEEEECCCCC
Confidence 67 8899999999999999876544
No 146
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.86 E-value=6.4e-20 Score=183.67 Aligned_cols=219 Identities=15% Similarity=0.114 Sum_probs=145.6
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCC-CCC-----------
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTL-QFP----------- 92 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~-~~~----------- 92 (485)
..++++++.|++|+|||+. +++++.++. |..+|.+++|+++. ++.+ .|+.|++||+.+. +..
T Consensus 71 ~~~~~~~~~d~~v~iWd~~--~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 144 (355)
T 3vu4_A 71 NYVAFVTGVKEVVHIWDDV--KKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCE 144 (355)
T ss_dssp SEEEEECSSTTEEEEEETT--TTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEE
T ss_pred CEEEEEECCccEEEEEECC--CCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEE
Confidence 4566777788999999997 788888886 66799999999864 3333 3677888887765 211
Q ss_pred --------------CceeEEEEcCCC---------------c-eEEeecCCccEEEEEEcCCCCEEEEEeCCCc-EEEEE
Q 011436 93 --------------ESEVSFRLKSDT---------------N-LFEILKSKTTVSAIEVSPDGKQFSITSPDRR-IRVFW 141 (485)
Q Consensus 93 --------------~~~~~~~~~~~~---------------~-l~~~~~~~~~v~~i~~spdg~~lat~s~D~~-I~iwd 141 (485)
.....|++..+. + +..+.+|...|.+++|||||++||+++.|++ |+|||
T Consensus 145 ~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd 224 (355)
T 3vu4_A 145 FSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFK 224 (355)
T ss_dssp EETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEE
T ss_pred EEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 112335555433 2 6778999999999999999999999999998 99999
Q ss_pred CCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcc
Q 011436 142 FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLH 220 (485)
Q Consensus 142 ~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~ 220 (485)
++++++++++... .....+.+++|+|+|++|++++.++ |++||+.
T Consensus 225 ~~~~~~~~~~~~g----------------------------------~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 225 TEDGVLVREFRRG----------------------------------LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp TTTCCEEEEEECT----------------------------------TCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred CCCCcEEEEEEcC----------------------------------CCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 9999999887410 0122346899999999999999987 9999998
Q ss_pred cCeEEE--eecccCCccceeeeeeccCCccCcceeeeecccccc-ccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 221 TNKVSR--ILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANA-NESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 221 tg~~v~--~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
++...+ .+.+. ++. ..|...- .............+ ....+. +|+..|+++..|+++++|.-..
T Consensus 271 ~~~~~~~~~~~~~-----~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~a~~-~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 271 NDQDNKRHALKGW-----INM-KYFQSEW-SLCNFKLSVDKHVRGCKIAWI-SESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCSCCCSEETTTT-----EEC-CCCCCSS-CSEEEECCCCTTCCCCEEEES-SSSEEEEEETTTTEEEEEEEEE
T ss_pred CCCCcccccccce-----eec-ccccccc-ceeEEEeccCCCCCceEEEEe-CCCCEEEEEeCCCeEEEEEEEc
Confidence 764211 11110 000 0111000 00000000000000 111222 7888899999999999997653
No 147
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.4e-20 Score=205.46 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=153.2
Q ss_pred CeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCc--ceEEEecCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEcCC
Q 011436 12 GAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNE--PLISKKVHMGPVKVMRYNPV--FDTVISADDKGIIEYWSPH 87 (485)
Q Consensus 12 ~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~fspd--~~~l~s~s~dg~i~~Wd~~ 87 (485)
..+..+..+.+.++.++++++.||+|++||+. ++. .+..+.+|..+|++++|+|+ ++++++++.||.|++||+.
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEE--NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEE--TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECC--CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 34444444444447889999999999999997 444 67788899999999999999 9999999999999999997
Q ss_pred CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-------------CCCEEEEEeCCCcEEEEECCCCc----EEEE
Q 011436 88 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-------------DGKQFSITSPDRRIRVFWFRTGK----LRRV 150 (485)
Q Consensus 88 t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-------------dg~~lat~s~D~~I~iwd~~tg~----~~~~ 150 (485)
+... .....+.+|...|.+++|+| ++.+|++|+.|+.|++||++++. ++..
T Consensus 132 ~~~~------------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 132 ENGT------------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp SSSC------------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred cCCC------------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence 7432 22334678999999999999 59999999999999999998874 3333
Q ss_pred eccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCC---CCEEEEecCCC-eEEEEcccCeE--
Q 011436 151 YDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES---SNFLIYATLLG-IKIVNLHTNKV-- 224 (485)
Q Consensus 151 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~---g~~l~~~s~~~-i~v~d~~tg~~-- 224 (485)
+.. ....+.+++|+|+ |++|++++.++ |++||+.+++.
T Consensus 200 ~~~------------------------------------h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~ 243 (753)
T 3jro_A 200 LEG------------------------------------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW 243 (753)
T ss_dssp ECC------------------------------------CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC
T ss_pred ecC------------------------------------CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc
Confidence 322 1224568999999 99999999987 99999988641
Q ss_pred ---EEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 225 ---SRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 225 ---v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
+....+|... +..+.+ .||+.+|++|+.|+.|++|+-+.
T Consensus 244 ~~~~~~~~~~~~~-----------------v~~l~~-----------spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 244 KKTLLKEEKFPDV-----------------LWRASW-----------SLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp BCCBSSSSCCSSC-----------------CCCEEE-----------CTTTCCEEEECSSSCEECCBCCS
T ss_pred eeEEeccCCCCCc-----------------eEEEEE-----------cCCCCEEEEEcCCCEEEEEecCC
Confidence 1111112211 111111 27888999999999999998764
No 148
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.3e-21 Score=199.18 Aligned_cols=191 Identities=12% Similarity=0.055 Sum_probs=136.3
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCC---------------------------CCcceEEEe-cCCCCeEEEEEcCCCCE
Q 011436 20 QGDVKAGLAISDRNSSFVHIYDARAD---------------------------SNEPLISKK-VHMGPVKVMRYNPVFDT 71 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~---------------------------~~~~~~~l~-~h~~~V~~l~fspd~~~ 71 (485)
+++|+++++||++.|++|+ |.... +++....+. .|...|.+++|||||++
T Consensus 22 ~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~ 99 (588)
T 2j04_A 22 TWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDW 99 (588)
T ss_dssp EECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSC
T ss_pred EECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCE
Confidence 3478999999999999995 43200 111111222 56889999999999999
Q ss_pred EEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCc-----cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011436 72 VISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKT-----TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 72 l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~-----~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~ 146 (485)
||+++.||.|++||.++ .+..+. |.. .|.+++|||||++||+|+.|++|+|||+.+++
T Consensus 100 LAs~s~dg~V~iwd~~~----------------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 100 MAVLSNNGNVSVFKDNK----------------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp EEEEETTSCEEEEETTE----------------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred EEEEeCCCcEEEEeCCc----------------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 99999999999999532 333355 554 49999999999999999999999999999886
Q ss_pred E-------EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEE
Q 011436 147 L-------RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVN 218 (485)
Q Consensus 147 ~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d 218 (485)
+ ++++..+. ..+...+.+++|+|+| |++++.+ .+++||
T Consensus 163 l~~~~~i~l~ti~~~~--------------------------------~gh~~~V~sVawSPdg--Laass~D~tVrlWd 208 (588)
T 2j04_A 163 ENTPEFYFESSIRLSD--------------------------------AGSKDWVTHIVWYEDV--LVAALSNNSVFSMT 208 (588)
T ss_dssp TTCCCCEEEEEEECSC--------------------------------TTCCCCEEEEEEETTE--EEEEETTCCEEEEC
T ss_pred cccccceeeeeeeccc--------------------------------ccccccEEEEEEcCCc--EEEEeCCCeEEEEE
Confidence 3 45552100 0112345799999999 5555555 599999
Q ss_pred cccCeE---EEee-cccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCC
Q 011436 219 LHTNKV---SRIL-GKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 219 ~~tg~~---v~~~-~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
+.++++ ++++ .+|...+..+.++ + ..+|+++ |++|++|+....+.
T Consensus 209 ~~~~~~~~~~~tL~~~h~~~V~svaFs---g---------------------------~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 209 VSASSHQPVSRMIQNASRRKITDLKIV---D---------------------------YKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp CCSSSSCCCEEEEECCCSSCCCCEEEE---T---------------------------TEEEEEC-SSEEEEEETTTTEE
T ss_pred CCCCccccceeeecccccCcEEEEEEE---C---------------------------CEEEEEe-CCeEEEEECCCCeE
Confidence 998873 4566 4665455544443 1 3467776 68999998765443
No 149
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.85 E-value=1.1e-19 Score=187.03 Aligned_cols=214 Identities=15% Similarity=0.197 Sum_probs=152.3
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCc
Q 011436 26 GLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTN 105 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~ 105 (485)
.++++++.|++|++||+. ++++++++.+|...|.+++|+ ++.+++++.||.|++||+.++ ..
T Consensus 170 ~~l~s~~~dg~i~vwd~~--~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~--------------~~ 231 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAE--TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG--------------QC 231 (445)
T ss_dssp TEEEEEETTSCEEEEETT--TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC--------------CE
T ss_pred CEEEEEeCCCeEEEEECC--cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC--------------cE
Confidence 478888899999999999 788999999999999999996 567999999999999999984 34
Q ss_pred eEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcc--------ccccccccc
Q 011436 106 LFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPL--------YRLEAIDFG 177 (485)
Q Consensus 106 l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~g 177 (485)
+..+.+|...|.+++| +|+++++++.|+.|++||+.++++++++..+...+.++.+....+ ..+.+...+
T Consensus 232 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCC
Confidence 4557778888888888 677888888888888888888888888877766655555432211 111111111
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeeccc---CCccceeeeeeccCCccCccee
Q 011436 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV---ENNDRFLRIALYQGDRSSKKVR 253 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~---~~~~r~~~~s~~~~~~~~~~~~ 253 (485)
+.+ ..+. .....+.++.+ ++++|++++.++ |++||+.++++++.+.++ ...+..+.
T Consensus 310 ~~~---~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-------------- 369 (445)
T 2ovr_B 310 NCI---HTLT-GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-------------- 369 (445)
T ss_dssp CEE---EEEC-CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE--------------
T ss_pred CEE---EEEc-CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE--------------
Confidence 110 0011 11222334444 678999999887 999999999999988763 32222111
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCCC
Q 011436 254 KIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
.++.+|++|+.|++|++|+.+.++..
T Consensus 370 ----------------~~~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 370 ----------------FNKNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp ----------------ECSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ----------------ECCCEEEEEeCCCeEEEEECCCCcee
Confidence 23457999999999999987755433
No 150
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.85 E-value=1.2e-20 Score=189.95 Aligned_cols=151 Identities=10% Similarity=0.119 Sum_probs=119.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceE--EEecCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEcCCCCCCCCce
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLI--SKKVHMGPVKVMRYNPVFDTVISADDKG----IIEYWSPHTLQFPESE 95 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~--~l~~h~~~V~~l~fspd~~~l~s~s~dg----~i~~Wd~~t~~~~~~~ 95 (485)
+|++.+++++++++ +++|+.. ++..+. ...+|...|.+++|+|+++++++++.|+ .+++||.......
T Consensus 185 spdg~~l~s~s~~~-~~~~~~~--~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~--- 258 (365)
T 4h5i_A 185 STDGKVVAYITGSS-LEVISTV--TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS--- 258 (365)
T ss_dssp CTTSSEEEEECSSC-EEEEETT--TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE---
T ss_pred ccCCceEEecccee-EEEEEec--cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec---
Confidence 67889999998554 6666654 444433 3457999999999999999999999887 5778876542110
Q ss_pred eEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccchhHHHhhhcCCCcccccccc
Q 011436 96 VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY-DESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
......+.+|...|++++|||||++||+|+.|++|+|||++++++++++ .+|
T Consensus 259 -------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-------------------- 311 (365)
T 4h5i_A 259 -------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-------------------- 311 (365)
T ss_dssp -------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--------------------
T ss_pred -------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--------------------
Confidence 1123457789999999999999999999999999999999999998876 222
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEccc
Q 011436 175 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHT 221 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~t 221 (485)
...+.+++|+|||++|+++|.|+ |||||+.+
T Consensus 312 ----------------~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 312 ----------------SFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ----------------SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ----------------cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 22346999999999999999998 99999864
No 151
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.85 E-value=6.7e-20 Score=184.51 Aligned_cols=231 Identities=11% Similarity=0.046 Sum_probs=132.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++++.++++++.|+.|++||++ +++++..+.+|..+|.+++|+|+++ ++++++.||.|++||+++...+.. .+..
T Consensus 153 ~~~~~~~~~~~~~~~v~~~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~--~~~~ 228 (408)
T 4a11_B 153 STKHCLVAVGTRGPKVQLCDLK--SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI--TLDQ 228 (408)
T ss_dssp CSSCCEEEEEESSSSEEEEESS--SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSE--ECCT
T ss_pred CCCCcEEEEEcCCCeEEEEeCC--CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccc--cccc
Confidence 3456688888899999999997 7788899999999999999999998 699999999999999976542211 0000
Q ss_pred ----cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhH-----HHhh-hcCC-----
Q 011436 101 ----KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEV-----AQDL-QRSD----- 165 (485)
Q Consensus 101 ----~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~-----i~~~-~~~~----- 165 (485)
........+..|...|.+++|+|+|++|++++.|+.|++||+.+++....+..+... .... ....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T 4a11_B 229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV 308 (408)
T ss_dssp TTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEE
T ss_pred cccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEE
Confidence 001112223678899999999999999999999999999999998865443221100 0000 0000
Q ss_pred ----CcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeee
Q 011436 166 ----APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRI 240 (485)
Q Consensus 166 ----~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~ 240 (485)
.....+.+...++.+ ..+ ......+.+++|+|+|++|++++.++ |++||+.+++.+.........
T Consensus 309 ~~~~~~~i~v~d~~~~~~~---~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~------ 378 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQI---TML-KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK------ 378 (408)
T ss_dssp EEEETTEEEEEETTTCCEE---EEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------------------
T ss_pred EEecCCEEEEEECcCCcce---eee-ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec------
Confidence 000111111111111 011 12345678999999999999999987 999999999876544333210
Q ss_pred eeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 241 ALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 241 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
..+. ..+...+.++.+|+.+++|+..
T Consensus 379 ~~~~------------------------~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 379 SQLN------------------------PAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp --------------------------------------------------
T ss_pred cccc------------------------cccceeecccCccCceeecCCc
Confidence 1111 1344556788889999999764
No 152
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.84 E-value=8.5e-20 Score=179.81 Aligned_cols=200 Identities=20% Similarity=0.163 Sum_probs=150.1
Q ss_pred Ccce-EEEEeCCCCeEEEEEc-CCCCCcceEEEec--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCC---------C
Q 011436 23 VKAG-LAISDRNSSFVHIYDA-RADSNEPLISKKV--HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT---------L 89 (485)
Q Consensus 23 ~~~~-l~vs~s~d~~I~iwd~-~~~~~~~~~~l~~--h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t---------~ 89 (485)
|++. ++++++.|+.|++||+ . ++ ....+.+ |...|.+++|+| ++++++++.|+.|++||+.+ .
T Consensus 66 ~~~~~~l~~~~~dg~i~~wd~~~--~~-~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 66 DNTDLQIYVGTVQGEILKVDLIG--SP-SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSS--SS-SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred CCCCcEEEEEcCCCeEEEEEecc--CC-ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC
Confidence 3566 7888889999999999 7 33 3477888 999999999999 99999999999999999876 4
Q ss_pred CCCC-------------------------ceeEEEEcC-CC--ceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 011436 90 QFPE-------------------------SEVSFRLKS-DT--NLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVF 140 (485)
Q Consensus 90 ~~~~-------------------------~~~~~~~~~-~~--~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iw 140 (485)
+... ....|++.. .. .......|...+.+++|+| ++++|++++.|+.|++|
T Consensus 142 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~ 221 (342)
T 1yfq_A 142 LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE 221 (342)
T ss_dssp SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEE
T ss_pred CeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEE
Confidence 4221 122255544 22 2223446778899999999 99999999999999999
Q ss_pred ECCCC------cEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-
Q 011436 141 WFRTG------KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG- 213 (485)
Q Consensus 141 d~~tg------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~- 213 (485)
|+..+ +.+..+..+..... .......+.+++|+|+|++|++++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 274 (342)
T 1yfq_A 222 FFDDQGDDYNSSKRFAFRCHRLNLK---------------------------DTNLAYPVNSIEFSPRHKFLYTAGSDGI 274 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTT---------------------------CCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred EEcCCCcccccccceeeeccccccc---------------------------ccccceeEEEEEEcCCCCEEEEecCCce
Confidence 99876 55555533211000 001123557999999999999999987
Q ss_pred eEEEEcccCeEEEeeccc-CCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCce
Q 011436 214 IKIVNLHTNKVSRILGKV-ENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHR 283 (485)
Q Consensus 214 i~v~d~~tg~~v~~~~~~-~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~ 283 (485)
|++||+.+++++..+.+| ...+.. ++ +|+.+|++|+.|+.
T Consensus 275 i~vwd~~~~~~~~~~~~~h~~~v~~--~~----------------------------~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 275 ISCWNLQTRKKIKNFAKFNEDSVVK--IA----------------------------CSDNILCLATSDDT 315 (342)
T ss_dssp EEEEETTTTEEEEECCCCSSSEEEE--EE----------------------------ECSSEEEEEEECTH
T ss_pred EEEEcCccHhHhhhhhcccCCCceE--ec----------------------------CCCCeEEEEecCCc
Confidence 999999999999999887 633331 11 46678999999997
No 153
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.83 E-value=1.5e-19 Score=199.54 Aligned_cols=196 Identities=14% Similarity=0.162 Sum_probs=151.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+|++.++++++.|+.|+|||+. +++.+.++.+|.+.|++++|+|++++|++++.||.|++||+.+.
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~------------ 129 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------------ 129 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETT--TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT------------
T ss_pred eCCCCEEEEEeCCCeEEEEECC--CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC------------
Confidence 4577788888899999999997 78889999999999999999999999999999999999998652
Q ss_pred CCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccch-hHHHhhhcCC--Cccc--------
Q 011436 102 SDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESL-EVAQDLQRSD--APLY-------- 169 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~-~~i~~~~~~~--~~~~-------- 169 (485)
......+.+|...|.+++|+| ++..|++++.|+.|++||+.+++....+..+. ..+..+.+++ ..-+
T Consensus 130 -~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 208 (814)
T 3mkq_A 130 -WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208 (814)
T ss_dssp -SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS
T ss_pred -ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC
Confidence 133445788999999999999 89999999999999999999888777665433 4455555544 2111
Q ss_pred --ccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccc
Q 011436 170 --RLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDR 236 (485)
Q Consensus 170 --~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r 236 (485)
.+++...+... ..+ ......+.+++|+|+|++|++++.++ |++||+.++++++.+..+...+.
T Consensus 209 ~i~~~d~~~~~~~---~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~ 274 (814)
T 3mkq_A 209 TIKIWDYQTKSCV---ATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274 (814)
T ss_dssp EEEEEETTTTEEE---EEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEE
T ss_pred EEEEEECCCCcEE---EEE-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEE
Confidence 11111111100 011 12344578999999999999999887 99999999999999988764444
No 154
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.82 E-value=2e-18 Score=173.75 Aligned_cols=185 Identities=14% Similarity=0.128 Sum_probs=143.8
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
+.++++++.|++|++||+. ++++++.+.+|. .+.+++|+|+++.+ ++++.|+.|++||+.+++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~--~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~------------- 65 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVT--SNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN------------- 65 (391)
T ss_dssp EEEEEEETTTTEEEEEETT--TTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------------
T ss_pred CEEEEEcCCCCEEEEEECC--CCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe-------------
Confidence 4678899999999999997 778888888775 58999999999976 778899999999998743
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011436 104 TNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
.+..+..+. .+.+++|+|||++|+.++ .|+.|++||+.+++++..+..+
T Consensus 66 -~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---------------------------- 115 (391)
T 1l0q_A 66 -VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG---------------------------- 115 (391)
T ss_dssp -EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------------------------
T ss_pred -EEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----------------------------
Confidence 333355444 799999999999886555 6799999999999988776321
Q ss_pred hHhhhccCCCCCceEEECCCCCEE-EEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccc
Q 011436 183 EKEIEKTETAPPSNAIFDESSNFL-IYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAA 260 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~~l-~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~ 260 (485)
....+++|+|+|++| ++++.++ |++||+.++++++.+..+. ....+ .|.
T Consensus 116 ---------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~---~~~---------------- 166 (391)
T 1l0q_A 116 ---------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGI---AVT---------------- 166 (391)
T ss_dssp ---------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEE---EEC----------------
T ss_pred ---------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceE---EEC----------------
Confidence 012588999999988 5666665 9999999999998887665 22211 121
Q ss_pred ccccCCCCCCCC-eEEEeeecCceEEEEecCCCC
Q 011436 261 NANESKEPFSDP-TLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 261 ~~~~~~~~~~d~-~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+|+ .++++++.|++|++|+.+..+
T Consensus 167 ---------~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 167 ---------PDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp ---------TTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ---------CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 554 455889999999999876543
No 155
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.81 E-value=5.6e-19 Score=176.81 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=120.3
Q ss_pred ceEEEE-eCCCCeEEEEEcCCCCCc---------------c-eEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-EEEEcC
Q 011436 25 AGLAIS-DRNSSFVHIYDARADSNE---------------P-LISKKVHMGPVKVMRYNPVFDTVISADDKGI-IEYWSP 86 (485)
Q Consensus 25 ~~l~vs-~s~d~~I~iwd~~~~~~~---------------~-~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~-i~~Wd~ 86 (485)
..++++ ++.||+|++||++ ++. + +.++.+|..+|++++|+|++++|+|++.|++ |++||+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~--~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQ--SSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp TEEEEEESSCTTCEEEEECC--C------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred cEEEEeCCCcCcEEEEEECC--CCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 345554 7899999999997 332 2 7889999999999999999999999999998 999999
Q ss_pred CCCCCCCceeEEEEcCCCceEEee-c-CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE--EeccchhHHHhhh
Q 011436 87 HTLQFPESEVSFRLKSDTNLFEIL-K-SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRR--VYDESLEVAQDLQ 162 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~-~-~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~--~~~~~~~~i~~~~ 162 (485)
++ +..+..+. + |...|.+++|+|||++||+++.|++|+|||+.++...+ .+... + ..
T Consensus 226 ~~--------------~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~---~--~~ 286 (355)
T 3vu4_A 226 ED--------------GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW---I--NM 286 (355)
T ss_dssp TT--------------CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT---E--EC
T ss_pred CC--------------CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce---e--ec
Confidence 87 44556677 5 89999999999999999999999999999998764211 11110 0 00
Q ss_pred cCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccC
Q 011436 163 RSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 222 (485)
Q Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg 222 (485)
......+.+.. ..+..........++|+++|++|++++.++ +++|++..+
T Consensus 287 ~~~~~~~~~~~----------~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 287 KYFQSEWSLCN----------FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCSSCSEE----------EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cccccccceeE----------EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00000000000 001111222336799999999999999988 899998654
No 156
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.81 E-value=1.6e-18 Score=176.87 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=148.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceE-----EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCcee
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLI-----SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~-----~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~ 96 (485)
+|++.++++++.|++|++||+. +++.++ .+.+|...|.+++|+|++.++++++.|+.|++||+++
T Consensus 131 s~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-------- 200 (433)
T 3bws_A 131 IDNTRLAIPLLEDEGMDVLDIN--SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-------- 200 (433)
T ss_dssp SSSSEEEEEBTTSSSEEEEETT--TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT--------
T ss_pred eCCCeEEEEeCCCCeEEEEECC--CCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC--------
Confidence 4477899999999999999997 666666 3458999999999999999999999999999999976
Q ss_pred EEEEcCCCceEEeecCCccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccc
Q 011436 97 SFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSI-TSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat-~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
++.+..+..|...+.+++|+|+|+++++ ++.|+.|++||+.++++++.+..+
T Consensus 201 ------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------------- 253 (433)
T 3bws_A 201 ------LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--------------------- 253 (433)
T ss_dssp ------CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC---------------------
T ss_pred ------ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC---------------------
Confidence 3445557788889999999999998854 447999999999999987766321
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC--------CC-eEEEEcccCeEEEeecccCCccceeeeeeccCC
Q 011436 176 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL--------LG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGD 246 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~--------~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~ 246 (485)
.....++|+|+|++|++++. ++ |++||+.+++++..+.... ..+.+ .|.
T Consensus 254 ----------------~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~---~~~-- 311 (433)
T 3bws_A 254 ----------------GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG-NKRHI---VSG-- 311 (433)
T ss_dssp ----------------SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE-CEEEE---EEC--
T ss_pred ----------------CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC-CcceE---EEC--
Confidence 01258899999999999873 44 9999999999887764322 22211 121
Q ss_pred ccCcceeeeeccccccccCCCCCCCC-eEEEeeecCceEEEEecCC
Q 011436 247 RSSKKVRKIPAAAANANESKEPFSDP-TLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~d~-~l~~s~~~d~~i~~f~~~~ 291 (485)
||+ .++++++.|+++++|+...
T Consensus 312 -----------------------~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 312 -----------------------NTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp -----------------------SSTTEEEEEETTTTEEEEEETTT
T ss_pred -----------------------CCCCEEEEEecCCCEEEEEECCC
Confidence 454 6889999999999998764
No 157
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.81 E-value=3.1e-18 Score=166.64 Aligned_cols=162 Identities=11% Similarity=0.098 Sum_probs=124.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcce-----------------------------------------EEEecCCCCe
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPL-----------------------------------------ISKKVHMGPV 60 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~-----------------------------------------~~l~~h~~~V 60 (485)
+|++.++++|+.|++|+|||++ +++++ ..+.+|...+
T Consensus 76 ~~~~~~l~sgs~Dg~v~iw~~~--~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (318)
T 4ggc_A 76 IKEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 153 (318)
T ss_dssp CTTSSEEEEEETTSEEEEEETT--TTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred CCCCCEEEEEECCCcEEEeecC--CceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCce
Confidence 5678899999999999999986 33333 3445678888
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCce-----------------------------------eEEEEcCCCc
Q 011436 61 KVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESE-----------------------------------VSFRLKSDTN 105 (485)
Q Consensus 61 ~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~-----------------------------------~~~~~~~~~~ 105 (485)
.++.|+++++++++++.|+.|++||+++++..... ..|+.....
T Consensus 154 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~- 232 (318)
T 4ggc_A 154 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA- 232 (318)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-
T ss_pred EEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-
Confidence 99999999999999999999999999876532110 002211111
Q ss_pred eEEeecCCccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh
Q 011436 106 LFEILKSKTTVSAIEVSPDGKQFSITS--PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 183 (485)
Q Consensus 106 l~~~~~~~~~v~~i~~spdg~~lat~s--~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 183 (485)
......+...+..++|+|++..+++++ .|+.|+|||+.++++++++.+|..
T Consensus 233 ~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--------------------------- 285 (318)
T 4ggc_A 233 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--------------------------- 285 (318)
T ss_dssp EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS---------------------------
T ss_pred ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC---------------------------
Confidence 122334567789999999999988765 799999999999999998865322
Q ss_pred HhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccC
Q 011436 184 KEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTN 222 (485)
Q Consensus 184 ~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg 222 (485)
.+.+++|+|+|++|++++.|+ |+|||+...
T Consensus 286 ---------~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 286 ---------RVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp ---------CEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ---------CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 346899999999999999998 999999754
No 158
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.81 E-value=6.6e-18 Score=169.90 Aligned_cols=188 Identities=11% Similarity=0.068 Sum_probs=141.5
Q ss_pred CCcce-EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAG-LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~-l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+|++. ++++++.|++|++||+. ++++++.+..|. .|.+++|+|+++.|+ +++.|+.|++||+.+++
T Consensus 40 s~dg~~l~~~~~~d~~i~v~d~~--~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--------- 107 (391)
T 1l0q_A 40 SPDGTKVYVANAHSNDVSIIDTA--TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--------- 107 (391)
T ss_dssp CTTSSEEEEEEGGGTEEEEEETT--TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---------
T ss_pred CCCCCEEEEECCCCCeEEEEECC--CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCe---------
Confidence 44554 55888889999999997 778888887665 899999999999775 55577999999998743
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQF-SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~l-at~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
.+..+.. ...+.+++|+|||++| ++++.|+.|++||+.++++++.+..+
T Consensus 108 -----~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~------------------------ 157 (391)
T 1l0q_A 108 -----VAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG------------------------ 157 (391)
T ss_dssp -----EEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC------------------------
T ss_pred -----EEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC------------------------
Confidence 2333443 3468999999999987 67788999999999999988776321
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEE-EecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeee
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLI-YATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIP 256 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~-~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~ 256 (485)
.....++|+|+|++|+ +++.++ |++||+.+++++..+..+. ..+.+ .|.
T Consensus 158 -------------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~---~~~------------ 208 (391)
T 1l0q_A 158 -------------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-APSGI---AVN------------ 208 (391)
T ss_dssp -------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-EEEEE---EEC------------
T ss_pred -------------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-Cccce---EEC------------
Confidence 0124789999999884 556665 9999999999988876543 22211 221
Q ss_pred ccccccccCCCCCCCCeEEEeee---cCceEEEEecCCCC
Q 011436 257 AAAANANESKEPFSDPTLLCCAF---KRHRIYLFSRREPE 293 (485)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~s~~---~d~~i~~f~~~~~~ 293 (485)
+|+..++++. .|++|++|+.+..+
T Consensus 209 -------------~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 209 -------------PEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp -------------TTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred -------------CCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 6665556655 79999999976543
No 159
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.81 E-value=1.3e-18 Score=172.28 Aligned_cols=138 Identities=11% Similarity=0.114 Sum_probs=116.3
Q ss_pred CCcceEEEecCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEc
Q 011436 46 SNEPLISKKVHMGPVKVMRYNPV---FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS 122 (485)
Q Consensus 46 ~~~~~~~l~~h~~~V~~l~fspd---~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~s 122 (485)
....++.+.+|.+.|++++|+|+ +++|++++.||.|++||+.+.. ......+.+|...|.+++|+
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~v~~~~~~ 95 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG------------QTIPKAQQMHTGPVLDVCWS 95 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS------------CEEEEEEEECSSCEEEEEEC
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC------------ceeEEEeccccCCEEEEEEC
Confidence 45667788899999999999999 5999999999999999987521 11124578899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEE--C
Q 011436 123 PDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIF--D 200 (485)
Q Consensus 123 pdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~f--d 200 (485)
|+|++|++++.|+.|++||+.+++++.... ....+.+++| +
T Consensus 96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------------------------------------~~~~v~~~~~~~~ 138 (368)
T 3mmy_A 96 DDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-------------------------------------HDAPVKTIHWIKA 138 (368)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEE-------------------------------------CSSCEEEEEEEEC
T ss_pred cCCCEEEEEcCCCcEEEEEcCCCCceeecc-------------------------------------ccCceEEEEEEeC
Confidence 999999999999999999999998775431 1123468889 9
Q ss_pred CCCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011436 201 ESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 201 ~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
|+|++|++++.++ |++||+.+++++..+..+.
T Consensus 139 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (368)
T 3mmy_A 139 PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171 (368)
T ss_dssp SSCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred CCCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence 9999999999988 9999999999998887765
No 160
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.79 E-value=6.6e-19 Score=180.79 Aligned_cols=258 Identities=10% Similarity=0.076 Sum_probs=170.1
Q ss_pred CceeeecCCCCCeEEEEEeCC------CCcceEEEEeC---CCCeEEEEEcCC------------------------CCC
Q 011436 1 MMLMIRLPFIPGAVEWVYKQG------DVKAGLAISDR---NSSFVHIYDARA------------------------DSN 47 (485)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~------~~~~~l~vs~s---~d~~I~iwd~~~------------------------~~~ 47 (485)
|+....+.+.+.++.|+.... .+..+++++.. ..+.|.|+++.. .++
T Consensus 38 ~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~ 117 (430)
T 2xyi_A 38 LVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCG 117 (430)
T ss_dssp EEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------
T ss_pred HHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCC
Confidence 355678899999999987542 12244555332 345788886420 011
Q ss_pred cc-eEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC
Q 011436 48 EP-LISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 125 (485)
Q Consensus 48 ~~-~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg 125 (485)
+. ...+..|.+.|++++|+|+ +.+|++++.||.|++||+.+...... .......+..+.+|...|.+++|+|++
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----PSGECQPDLRLRGHQKEGYGLSWNPNL 193 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC----TTCCCCCSEEEECCSSCCCCEEECTTS
T ss_pred ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC----ccccCCCcEEecCCCCCeEEEEeCCCC
Confidence 11 2334589999999999997 67999999999999998865211000 000034566688999999999999999
Q ss_pred C-EEEEEeCCCcEEEEECCCCcE-------EEEeccchhHHHhhhcCCC-ccc----------ccccccccchhhhhHhh
Q 011436 126 K-QFSITSPDRRIRVFWFRTGKL-------RRVYDESLEVAQDLQRSDA-PLY----------RLEAIDFGRRMAVEKEI 186 (485)
Q Consensus 126 ~-~lat~s~D~~I~iwd~~tg~~-------~~~~~~~~~~i~~~~~~~~-~~~----------~~~~~~~g~~~~~~~~i 186 (485)
. +|++++.|+.|++||+.++.. ...+..|...+.++++++. ..+ .+++...+........+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 8 999999999999999988432 3455566666666666652 111 11111111000000111
Q ss_pred hccCCCCCceEEECCCCC-EEEEecCCC-eEEEEccc-CeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccc
Q 011436 187 EKTETAPPSNAIFDESSN-FLIYATLLG-IKIVNLHT-NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANAN 263 (485)
Q Consensus 187 ~~~~~~~~~~i~fd~~g~-~l~~~s~~~-i~v~d~~t-g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~ 263 (485)
......+.+++|+|+++ +|++++.++ |++||+.+ ++.+..+..|...+..+.+ .
T Consensus 274 -~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~---s------------------- 330 (430)
T 2xyi_A 274 -DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW---S------------------- 330 (430)
T ss_dssp -ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE---C-------------------
T ss_pred -ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE---C-------------------
Confidence 12344568999999998 688898887 99999987 5667777777644432222 1
Q ss_pred cCCCCCCC-CeEEEeeecCceEEEEecCC
Q 011436 264 ESKEPFSD-PTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 264 ~~~~~~~d-~~l~~s~~~d~~i~~f~~~~ 291 (485)
|+ ..+|+|++.|++|++|+-+.
T Consensus 331 ------p~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 331 ------PHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ------SSCTTEEEEEETTSCCEEEEGGG
T ss_pred ------CCCCCEEEEEeCCCcEEEEeCCC
Confidence 44 46899999999999998764
No 161
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.78 E-value=1.2e-17 Score=170.46 Aligned_cols=217 Identities=17% Similarity=0.181 Sum_probs=151.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++++.++++++.|+.|++||++ +++.+.++..|...+.+++|+|+++.++ +++.|+.|++||+.+++
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~---------- 245 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLK--TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL---------- 245 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETT--TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE----------
T ss_pred cCCCEEEEEECCCCEEEEEECC--CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc----------
Confidence 4578899999999999999997 7788889999999999999999999775 55589999999997643
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEe--------CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCc--ccc
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITS--------PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP--LYR 170 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s--------~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~--~~~ 170 (485)
.+..+..+ ..+.+++|+|+|+++++++ .|+.|++||+.+++++..+.... .+..+.+++.. ++-
T Consensus 246 ----~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 246 ----EIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG-NKRHIVSGNTENKIYV 319 (433)
T ss_dssp ----EEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE-CEEEEEECSSTTEEEE
T ss_pred ----EEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC-CcceEEECCCCCEEEE
Confidence 23334433 4589999999999999988 58899999999999877762211 22233343332 111
Q ss_pred c---------ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----------------CeEEEEcccCeEE
Q 011436 171 L---------EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----------------GIKIVNLHTNKVS 225 (485)
Q Consensus 171 ~---------~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----------------~i~v~d~~tg~~v 225 (485)
. .....++.. ..+ .......+++|+|+|++|++++.. .|++||+.+++++
T Consensus 320 ~~~~~~~v~v~d~~~~~~~---~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 320 SDMCCSKIEVYDLKEKKVQ---KSI--PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EETTTTEEEEEETTTTEEE---EEE--ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred EecCCCEEEEEECCCCcEE---EEe--cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 1 111111100 011 123345689999999988887763 4999999999988
Q ss_pred EeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEee-ecCceEEEEecC
Q 011436 226 RILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCA-FKRHRIYLFSRR 290 (485)
Q Consensus 226 ~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~-~~d~~i~~f~~~ 290 (485)
..+..+. ....+. | .||+..|+++ ..|++|++|...
T Consensus 395 ~~~~~~~-~~~~~~---~-------------------------s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 EFWEAGN-QPTGLD---V-------------------------SPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECSS-SEEEEE---E-------------------------CTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecCCC-CCceEE---E-------------------------cCCCCEEEEEECCCCeEEEEEec
Confidence 8876643 222111 1 1676666655 469999999753
No 162
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.76 E-value=3.7e-17 Score=167.01 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=131.1
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc---------
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES--------- 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~--------- 94 (485)
++.++++++.|+++++||.. .....+.++.+|...+..+.|+|+++++++++.|+.+++||..+++....
T Consensus 198 ~~~~l~sgs~d~~i~~~d~~-~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 198 NSYILSSGSRSGHIHHHDVR-VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp ETTEEEEEETTSEEEEEETT-SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred CCCEEEEEeCCCceeEeeec-ccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence 45678888899999999986 23456788899999999999999999999999999999998876543210
Q ss_pred --------------------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCc
Q 011436 95 --------------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS--PDRRIRVFWFRTGK 146 (485)
Q Consensus 95 --------------------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s--~D~~I~iwd~~tg~ 146 (485)
...|++.++..+..+..| ..+.++.|+|+++.+++++ .|+.|+|||+.+++
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 112444444445555443 5689999999999998876 79999999999999
Q ss_pred EEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEE
Q 011436 147 LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVS 225 (485)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v 225 (485)
++.++.+|.. .+.+++|+|+|++|++|+.|+ |++||+.+....
T Consensus 356 ~v~~l~gH~~------------------------------------~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 356 KVAELKGHTS------------------------------------RVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEEECCCSS------------------------------------CEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEcCCCC------------------------------------CEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 9998865332 245899999999999999998 999999877655
Q ss_pred Eeeccc
Q 011436 226 RILGKV 231 (485)
Q Consensus 226 ~~~~~~ 231 (485)
+....+
T Consensus 400 ~~~~~~ 405 (420)
T 4gga_A 400 RRRERE 405 (420)
T ss_dssp ------
T ss_pred chhhhc
Confidence 544433
No 163
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.74 E-value=1.2e-16 Score=169.15 Aligned_cols=225 Identities=11% Similarity=0.103 Sum_probs=153.2
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcC--CCCCCCCceeEE
Q 011436 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSP--HTLQFPESEVSF 98 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~--~t~~~~~~~~~~ 98 (485)
.+|+++++++++.|++|.+||.. +++++.++..+.. +.+++|+||+++|++++.|+.|.+||+ .++
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~--t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--------- 212 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGD--SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--------- 212 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETT--TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---------
T ss_pred cCCCCEEEEEEcCCCeEEEEECC--CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---------
Confidence 35688999999999999999997 7888999984333 899999999999999999999999999 553
Q ss_pred EEcCCCceEEeecCCccEEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCcEEEEeccch----------h-HHHhhh
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSP----DGKQFSITSP-DRRIRVFWFRTGKLRRVYDESL----------E-VAQDLQ 162 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~sp----dg~~lat~s~-D~~I~iwd~~tg~~~~~~~~~~----------~-~i~~~~ 162 (485)
+.+..+. +...+.+++||| ||+++++++. +++|+|||..++++++++..+. . .+..+.
T Consensus 213 -----~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 213 -----TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp -----EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred -----cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence 3334455 345579999999 9999999985 8999999999999999885321 0 112222
Q ss_pred cCCCc-ccccccccccchhhhh----Hhh---hccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccCeEEEeecccC
Q 011436 163 RSDAP-LYRLEAIDFGRRMAVE----KEI---EKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 163 ~~~~~-~~~~~~~~~g~~~~~~----~~i---~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg~~v~~~~~~~ 232 (485)
.++.. .+-+...+.++-..+. +.+ ..........++|||+|++|++++. +.|.+||+.+|+++.++....
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 22211 0000000001000000 000 0112334568999999998877654 459999999999998886422
Q ss_pred Cc--cceeeeeeccCCccCcceeeeeccccccccCCCCCCC-CeEEEeee-cCceEEEEecC
Q 011436 233 NN--DRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSD-PTLLCCAF-KRHRIYLFSRR 290 (485)
Q Consensus 233 ~~--~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~s~~-~d~~i~~f~~~ 290 (485)
.+ .|...+ +. |+ ..+++|+. +|++|.+|+..
T Consensus 367 ~ph~g~g~~~--~~-------------------------p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 367 TPHPGRGANF--VH-------------------------PKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp SBCCTTCEEE--EE-------------------------TTTEEEEEEEBSSSSEEEEEECC
T ss_pred CCCCCCCccc--CC-------------------------CCCccEEEeccCCCceEEEEEeC
Confidence 11 122221 11 44 67788886 79999999764
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=4.4e-17 Score=167.78 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=116.6
Q ss_pred CCcceEEE----EeCCCCeEEEEEcCCC------CCcc---eEEEecCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCC
Q 011436 22 DVKAGLAI----SDRNSSFVHIYDARAD------SNEP---LISKKVHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPH 87 (485)
Q Consensus 22 ~~~~~l~v----s~s~d~~I~iwd~~~~------~~~~---~~~l~~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~ 87 (485)
++++.+++ +++.|++|+|||+... ..++ +..+.+|..+|.+|+|+|+ +.+|++++.||+|++||++
T Consensus 101 spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~ 180 (434)
T 2oit_A 101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT 180 (434)
T ss_dssp CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES
T ss_pred cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC
Confidence 45566666 8899999999998621 0022 3555689999999999998 7899999999999999987
Q ss_pred CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCc
Q 011436 88 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 88 t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~ 167 (485)
++ ..+....+|...|.+++|||+|++||+|+.|++|++||++ ++..+.+..+...
T Consensus 181 ~~--------------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~---------- 235 (434)
T 2oit_A 181 ET--------------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY---------- 235 (434)
T ss_dssp SS--------------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC----------
T ss_pred CC--------------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCccc----------
Confidence 63 2333456688899999999999999999999999999998 7766665321100
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC--------CeEEEEcccC
Q 011436 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL--------GIKIVNLHTN 222 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~--------~i~v~d~~tg 222 (485)
.......+.+++|++++.++++.+.. .+++|++.+.
T Consensus 236 -------------------~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 236 -------------------ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp -------------------CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred -------------------CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 00001134689999999988765422 2889998754
No 165
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.72 E-value=5.2e-16 Score=158.74 Aligned_cols=174 Identities=12% Similarity=0.071 Sum_probs=128.0
Q ss_pred CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEcCCCCCCCCceeEEEEcCCCceEEeec
Q 011436 35 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG---IIEYWSPHTLQFPESEVSFRLKSDTNLFEILK 111 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg---~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~ 111 (485)
+.|++||+. +...+.+.+|...|.+++|||||+.|++++.|+ .|++||+.+++. ..+..
T Consensus 159 ~~i~i~d~~---g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~---------------~~l~~ 220 (415)
T 2hqs_A 159 YELRVSDYD---GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---------------RQVAS 220 (415)
T ss_dssp EEEEEEETT---SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE---------------EEEEC
T ss_pred ceEEEEcCC---CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE---------------EEeec
Confidence 799999995 455788889999999999999999999999885 999999987432 23666
Q ss_pred CCccEEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhc
Q 011436 112 SKTTVSAIEVSPDGKQFS-ITSPDRR--IRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK 188 (485)
Q Consensus 112 ~~~~v~~i~~spdg~~la-t~s~D~~--I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~ 188 (485)
|...+.+++|||||++|| +++.|+. |++||+.++++. .+..+
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~---------------------------------- 265 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDG---------------------------------- 265 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCC----------------------------------
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCC----------------------------------
Confidence 778899999999999888 6666654 999999998863 33210
Q ss_pred cCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecccccccc
Q 011436 189 TETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANE 264 (485)
Q Consensus 189 ~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 264 (485)
...+.+++|+|+|++|++++.. .|.+||+.++++.+ +..+..... -..|.
T Consensus 266 --~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~---~~~~s-------------------- 319 (415)
T 2hqs_A 266 --RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQ---DADVS-------------------- 319 (415)
T ss_dssp --SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCSSSEEE---EEEEC--------------------
T ss_pred --CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-EecCCCccc---CeEEC--------------------
Confidence 1123578999999999998863 36777988887543 333321111 11221
Q ss_pred CCCCCCCCeEEEeeecC---ceEEEEecCCC
Q 011436 265 SKEPFSDPTLLCCAFKR---HRIYLFSRREP 292 (485)
Q Consensus 265 ~~~~~~d~~l~~s~~~d---~~i~~f~~~~~ 292 (485)
||+..|++++.+ .+|++|+....
T Consensus 320 -----pdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 320 -----SDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp -----TTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred -----CCCCEEEEEECcCCceEEEEEECCCC
Confidence 787777777654 79999987643
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.71 E-value=1.3e-16 Score=164.37 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=116.5
Q ss_pred cceEEEEeCCCCeEEEEEcCC--------CCCcce------EEEecCCCCeEEEEEcCCCCEEE----EEeCCCcEEEEc
Q 011436 24 KAGLAISDRNSSFVHIYDARA--------DSNEPL------ISKKVHMGPVKVMRYNPVFDTVI----SADDKGIIEYWS 85 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~--------~~~~~~------~~l~~h~~~V~~l~fspd~~~l~----s~s~dg~i~~Wd 85 (485)
...++++++.|+ ++||+... +....+ ..+ .|...|.+++|+|++++|+ +++.|+.|++||
T Consensus 47 ~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd 124 (434)
T 2oit_A 47 KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFD 124 (434)
T ss_dssp TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEE
T ss_pred CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEE
Confidence 344555565666 99987531 000111 122 4677899999999999999 889999999999
Q ss_pred CCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcC
Q 011436 86 PHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRS 164 (485)
Q Consensus 86 ~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~ 164 (485)
+.+........ .+.-..+..+.+|...|.+++|+|+ +.+||+++.|++|++||+++++.+....+|
T Consensus 125 ~~~~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~---------- 191 (434)
T 2oit_A 125 VRTFSNEAKQQ---KRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS---------- 191 (434)
T ss_dssp HHHHHCTTCSS---CCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG----------
T ss_pred ccccccCCcCC---cceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC----------
Confidence 86531000000 0000113346678999999999998 899999999999999999998765443221
Q ss_pred CCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeeccc
Q 011436 165 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~ 231 (485)
...+.+++|+|+|++|++++.++ |++||+. ++..+.+..+
T Consensus 192 --------------------------~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~ 232 (434)
T 2oit_A 192 --------------------------TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP 232 (434)
T ss_dssp --------------------------GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC
T ss_pred --------------------------CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC
Confidence 11236899999999999999987 9999998 7776666554
No 167
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.70 E-value=1.5e-15 Score=155.39 Aligned_cols=185 Identities=12% Similarity=0.060 Sum_probs=135.6
Q ss_pred CCCcceEEEEeCCCC---eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEcCCCCCCCCc
Q 011436 21 GDVKAGLAISDRNSS---FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGI--IEYWSPHTLQFPES 94 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~---~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~--i~~Wd~~t~~~~~~ 94 (485)
.+|++..+++++.++ .|++||+. ++++ ..+..|...+.+++|+|||+.|+ +++.|+. |.+||+.+++
T Consensus 186 ~Spdg~~la~~s~~~~~~~i~~~d~~--tg~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---- 258 (415)
T 2hqs_A 186 WSPDGSKLAYVTFESGRSALVIQTLA--NGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---- 258 (415)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETT--TCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC----
T ss_pred EcCCCCEEEEEEecCCCcEEEEEECC--CCcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC----
Confidence 467888788777764 99999997 5554 45778999999999999999877 7777665 8888987633
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011436 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DR--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
+..+..|...+.+++|||||++|++++. ++ .|++||+.++++.+ +..
T Consensus 259 -----------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~------------------ 308 (415)
T 2hqs_A 259 -----------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITW------------------ 308 (415)
T ss_dssp -----------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCC------------------
T ss_pred -----------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Eec------------------
Confidence 2346677788999999999999998886 44 68888998887532 211
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----CeEEEEcccCeEEEeecccCCccceeeeeeccCCc
Q 011436 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDR 247 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~ 247 (485)
....+.+++|+|+|++|++++.+ .|.+||+.++++. .+..+. ....+ .|
T Consensus 309 ------------------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~---~~---- 361 (415)
T 2hqs_A 309 ------------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETP---SL---- 361 (415)
T ss_dssp ------------------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEE---EE----
T ss_pred ------------------CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCe---EE----
Confidence 00112478999999999998864 4999999999874 343332 22211 12
Q ss_pred cCcceeeeeccccccccCCCCCCCCeEEEeeecCc---eEEEEecC
Q 011436 248 SSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRH---RIYLFSRR 290 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~---~i~~f~~~ 290 (485)
.||+..|++++.|. +||+|+..
T Consensus 362 ---------------------spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 362 ---------------------APNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp ---------------------CTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ---------------------cCCCCEEEEEEcCCCccEEEEEECC
Confidence 17888788887776 89999864
No 168
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.65 E-value=8.3e-15 Score=143.66 Aligned_cols=223 Identities=11% Similarity=0.112 Sum_probs=145.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD-KGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~-dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
...++++++.++.|++||+. +++.+..+..+..++ +++|+|+++.++.++. ++.|.+||+.+++..
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~---------- 75 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTD--TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK---------- 75 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETT--TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE----------
T ss_pred CCEEEEEecCCCeEEEEeCc--ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee----------
Confidence 56778888899999999997 777788877777777 9999999996666554 899999999875431
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCcEEEEeccchhHHHhhhcCCCc--cccccccccc
Q 011436 103 DTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR---RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP--LYRLEAIDFG 177 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~---~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~g 177 (485)
...+..+..+..+++|+|||++++++..++ .|++||+.++++++.+..+... ..+++++.. ++-... ..+
T Consensus 76 ---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~spdg~~l~~~~~-~~~ 150 (331)
T 3u4y_A 76 ---VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDA-VGIAISPNGNGLILIDR-SSA 150 (331)
T ss_dssp ---EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTE-EEEEECTTSSCEEEEEE-TTT
T ss_pred ---EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCc-cceEECCCCCEEEEEec-CCC
Confidence 233555555555599999999999555553 8999999999998887543322 334444442 111111 001
Q ss_pred chhh---------h-hH-hhhccCCCCCceEEECCCCCEEEEecC-CC-eEEEEcccCeE---EEeecccCCccceeeee
Q 011436 178 RRMA---------V-EK-EIEKTETAPPSNAIFDESSNFLIYATL-LG-IKIVNLHTNKV---SRILGKVENNDRFLRIA 241 (485)
Q Consensus 178 ~~~~---------~-~~-~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~-i~v~d~~tg~~---v~~~~~~~~~~r~~~~s 241 (485)
..+. . .. ............++|+|+|++|++++. ++ |++||+.++++ +..+..+. ..+.+.+
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~-~~~~~~~- 228 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN-LPGTIVV- 228 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS-CCCCEEE-
T ss_pred ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC-CCceEEE-
Confidence 1000 0 00 000011223468999999997766654 44 99999999987 66664432 1221111
Q ss_pred eccCCccCcceeeeeccccccccCCCCCCCCe-EEEeeecCceEEEEecCCCC
Q 011436 242 LYQGDRSSKKVRKIPAAAANANESKEPFSDPT-LLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-l~~s~~~d~~i~~f~~~~~~ 293 (485)
.||+. ++++...++.|++|+....+
T Consensus 229 ---------------------------spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 229 ---------------------------SRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp ---------------------------CTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred ---------------------------CCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 16766 66677789999999876443
No 169
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.64 E-value=3.2e-14 Score=139.10 Aligned_cols=226 Identities=10% Similarity=-0.010 Sum_probs=146.2
Q ss_pred CCCeEEEEEeCCCCcc-eEEEEeCCCCeEEEEEcCCCCCcceEEEec-C----CCCeEEEEEcCCCCEEEEEe-------
Q 011436 10 IPGAVEWVYKQGDVKA-GLAISDRNSSFVHIYDARADSNEPLISKKV-H----MGPVKVMRYNPVFDTVISAD------- 76 (485)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~-h----~~~V~~l~fspd~~~l~s~s------- 76 (485)
.|..++| +|++ .++++++.++.|.+||+. +++.+..+.. + ...+.+++|+|+++.++.++
T Consensus 35 ~~~~~~~-----s~dg~~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 107 (337)
T 1pby_B 35 TPMVPMV-----APGGRIAYATVNKSESLVKIDLV--TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEE-----CTTSSEEEEEETTTTEEEEEETT--TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred CccceEE-----cCCCCEEEEEeCCCCeEEEEECC--CCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccc
Confidence 4555544 3455 567788888999999997 6777777763 2 23677899999999888886
Q ss_pred -----CCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 011436 77 -----DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 77 -----~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
.++.|.+||+.+++. +..+.. ...+.+++|+|||++|+++ ++.|++||+.++++++.+
T Consensus 108 ~~~~~~~~~i~v~d~~~~~~--------------~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 108 THFEVQPTRVALYDAETLSR--------------RKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp SCEEECCCEEEEEETTTTEE--------------EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred ccccccCceEEEEECCCCcE--------------EEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeee
Confidence 579999999976432 222332 3347789999999988887 689999999999998887
Q ss_pred ccchhHHHhhhcCCCcc--cccc--------------------------------cccccchhhhhHhhhccCCCCCceE
Q 011436 152 DESLEVAQDLQRSDAPL--YRLE--------------------------------AIDFGRRMAVEKEIEKTETAPPSNA 197 (485)
Q Consensus 152 ~~~~~~i~~~~~~~~~~--~~~~--------------------------------~~~~g~~~~~~~~i~~~~~~~~~~i 197 (485)
...... ....+++... +... +...++.. ...+. ........+
T Consensus 171 ~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~-~~~~~~~~~ 246 (337)
T 1pby_B 171 PIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MREVR-IMDVFYFST 246 (337)
T ss_dssp CSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEEEE-ECSSCEEEE
T ss_pred eccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--EeecC-CCCCceeeE
Confidence 543210 0112222211 1000 00000000 00000 111233579
Q ss_pred EECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEe
Q 011436 198 IFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCC 277 (485)
Q Consensus 198 ~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s 277 (485)
+|+|+|++|+++ ...|.+||+.+++++..+..+. ....+ .| .+|+..+++
T Consensus 247 ~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~-~~~~~---~~-------------------------s~dg~~l~~ 296 (337)
T 1pby_B 247 AVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPH-SYYSV---NV-------------------------STDGSTVWL 296 (337)
T ss_dssp EECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSS-CCCEE---EE-------------------------CTTSCEEEE
T ss_pred EECCCCCEEEEe-CCeEEEEECCCCcCcceecCCC-ceeeE---EE-------------------------CCCCCEEEE
Confidence 999999999888 4559999999999887775443 22211 11 167766677
Q ss_pred eecCceEEEEecCCCC
Q 011436 278 AFKRHRIYLFSRREPE 293 (485)
Q Consensus 278 ~~~d~~i~~f~~~~~~ 293 (485)
+..|+.|++|+....+
T Consensus 297 ~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 297 GGALGDLAAYDAETLE 312 (337)
T ss_dssp ESBSSEEEEEETTTCC
T ss_pred EcCCCcEEEEECcCCc
Confidence 7889999999876443
No 170
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.62 E-value=4.8e-14 Score=139.05 Aligned_cols=190 Identities=11% Similarity=0.058 Sum_probs=139.5
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCC---------eEEEEEcCCCCEEEEEe--CCCcEEEEcCCCCCCCC
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGP---------VKVMRYNPVFDTVISAD--DKGIIEYWSPHTLQFPE 93 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~---------V~~l~fspd~~~l~s~s--~dg~i~~Wd~~t~~~~~ 93 (485)
..+++++..++.|.+||.. +++.+..+..+... +.+++|+|+++.++.++ .++.|.+||..+++
T Consensus 101 ~~l~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~--- 175 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAK--TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK--- 175 (353)
T ss_dssp TEEEEEETTTTEEEEEETT--TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE---
T ss_pred CEEEEEecCCCEEEEEeCC--CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc---
Confidence 3477888888999999997 77777888755432 78999999999777665 57889999998743
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccc
Q 011436 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
.+..+..+...+.+++|+|||+++++++.++.|.+||+.+++.++.+....
T Consensus 176 -----------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~------------------ 226 (353)
T 3vgz_A 176 -----------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD------------------ 226 (353)
T ss_dssp -----------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC------------------
T ss_pred -----------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC------------------
Confidence 233344344557889999999999999999999999999999887763200
Q ss_pred ccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-C-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcc
Q 011436 174 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-G-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKK 251 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~ 251 (485)
.........++|+|+|++|.+++.. + |.+||+.++++++.+.... . ..+ .|.
T Consensus 227 --------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-~~~---~~s------- 280 (353)
T 3vgz_A 227 --------------DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-S-LAV---LFN------- 280 (353)
T ss_dssp --------------SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-C-CCE---EEE-------
T ss_pred --------------CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-C-ceE---EEC-------
Confidence 0001123478999999988777654 4 9999999999887775433 1 111 111
Q ss_pred eeeeeccccccccCCCCCCCC-eEEEeeecCceEEEEecCCC
Q 011436 252 VRKIPAAAANANESKEPFSDP-TLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~d~-~l~~s~~~d~~i~~f~~~~~ 292 (485)
+|+ .++++...+++|++|+....
T Consensus 281 ------------------~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 281 ------------------PARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp ------------------TTTTEEEEEETTTTEEEEEETTTT
T ss_pred ------------------CCCCEEEEEECCCCeEEEEECCCC
Confidence 554 47788888999999987543
No 171
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.62 E-value=1.7e-15 Score=165.13 Aligned_cols=159 Identities=13% Similarity=0.062 Sum_probs=108.8
Q ss_pred CCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCC---CeEEEEEcCCCCEEEEEeCC---------CcEEEEcCC
Q 011436 20 QGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG---PVKVMRYNPVFDTVISADDK---------GIIEYWSPH 87 (485)
Q Consensus 20 ~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~---~V~~l~fspd~~~l~s~s~d---------g~i~~Wd~~ 87 (485)
.++|++.++++ +.|++|++||+. ++++...+.+|.. .|.+++|||||++|++++.+ +.+.+||+.
T Consensus 23 ~~spdg~~~~~-~~dg~i~~~d~~--~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 23 KWISDTEFIYR-EQKGTVRLWNVE--TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGG--GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred EEcCCCcEEEE-eCCCCEEEEECC--CCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 34667777766 579999999997 6777777777765 49999999999999999875 678899998
Q ss_pred CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCc
Q 011436 88 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 88 t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~ 167 (485)
+++.. .+....+|...+.+++|||||++||.++. +.|++||+.++++.+....+...+
T Consensus 100 ~~~~~------------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~--------- 157 (723)
T 1xfd_A 100 HGDPQ------------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV--------- 157 (723)
T ss_dssp SCCCE------------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT---------
T ss_pred CCceE------------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc---------
Confidence 75431 01112344455888999999999999886 799999999998876553311110
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC
Q 011436 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 212 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~ 212 (485)
++ ... ...+ .+.++ .....+++|||||++|++++.+
T Consensus 158 ~~--~g~--~~~v-~~ee~----~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 158 IY--NGL--SDWL-YEEEI----LKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp EE--EEE--CCHH-HHHTT----SSSSEEEEECTTSSEEEEEEEE
T ss_pred eE--Ccc--ccee-EEEEe----ccCcceEEECCCCCEEEEEEEC
Confidence 00 000 0000 01111 1123589999999999998754
No 172
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.60 E-value=1.2e-14 Score=159.00 Aligned_cols=115 Identities=12% Similarity=0.125 Sum_probs=89.8
Q ss_pred CCcceEEEEeCC-CC-----eEEEEEcCCCCCcceEEEecCCC------------------------CeEEEEEcCCCCE
Q 011436 22 DVKAGLAISDRN-SS-----FVHIYDARADSNEPLISKKVHMG------------------------PVKVMRYNPVFDT 71 (485)
Q Consensus 22 ~~~~~l~vs~s~-d~-----~I~iwd~~~~~~~~~~~l~~h~~------------------------~V~~l~fspd~~~ 71 (485)
+|++..+++++. |+ +|++||+. +++....+..|.. .|.+++|||||++
T Consensus 45 SpdG~~la~~~~~d~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~ 122 (741)
T 2ecf_A 45 APDGSRVTFLRGKDSDRNQLDLWSYDIG--SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR 122 (741)
T ss_dssp CTTSSEEEEEECCSSCTTEEEEEEEETT--TCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE
T ss_pred ecCCCEEEEEeccCCCCcccEEEEEECC--CCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE
Confidence 678887877776 87 99999997 5666666654433 3889999999999
Q ss_pred EEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 011436 72 VISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 72 l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
|++++. +.|.+||+.++..+ .+..+..+...+.+++|||||++||.++ ++.|++||+.+++..+..
T Consensus 123 l~~~~~-~~i~~~d~~~~~~~------------~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 123 LLFPLG-GELYLYDLKQEGKA------------AVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EEEEET-TEEEEEESSSCSTT------------SCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC
T ss_pred EEEEeC-CcEEEEECCCCCcc------------eEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec
Confidence 999886 99999999875200 1222556777899999999999999987 568999999999877654
Q ss_pred c
Q 011436 152 D 152 (485)
Q Consensus 152 ~ 152 (485)
.
T Consensus 189 ~ 189 (741)
T 2ecf_A 189 A 189 (741)
T ss_dssp C
T ss_pred c
Confidence 3
No 173
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.59 E-value=6.6e-14 Score=137.14 Aligned_cols=150 Identities=13% Similarity=0.055 Sum_probs=106.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCC--cceEEEecCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEcCC--CCCCCCceeEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSN--EPLISKKVHMGPVKVMRYNPVFDTVISADDK-GIIEYWSPH--TLQFPESEVSF 98 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~--~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d-g~i~~Wd~~--t~~~~~~~~~~ 98 (485)
...++++++.|+.|++||+.. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. +++.
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~------- 74 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNH-EGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL------- 74 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECT-TSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------
T ss_pred eEEEEEeCCCCCeEEEEEECC-CCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------
Confidence 456777778899999999952 33 333333 577789999999999988888876 999999876 3221
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC---cEEEEeccchhHHHhhhcCCCcccccccc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWFRTG---KLRRVYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D~~I~iwd~~tg---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
..+..+..+. .+.+++|+|||++|++++. ++.|++||+.++ +.++.+..
T Consensus 75 -----~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------------------- 127 (343)
T 1ri6_A 75 -----TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--------------------- 127 (343)
T ss_dssp -----EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC---------------------
T ss_pred -----eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC---------------------
Confidence 1122333333 6789999999998877765 889999999433 33333321
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCCCCEEEEec-CC-CeEEEEccc-CeEE
Q 011436 175 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT-LL-GIKIVNLHT-NKVS 225 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s-~~-~i~v~d~~t-g~~v 225 (485)
......++|+|+|++|++++ .+ .|++||+.+ +++.
T Consensus 128 ----------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 128 ----------------LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp ----------------CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred ----------------CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 01135789999999888876 44 499999987 6653
No 174
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.59 E-value=1.9e-13 Score=144.69 Aligned_cols=209 Identities=11% Similarity=0.060 Sum_probs=142.9
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcC----CCCEEEEEe-CCCcEEEEcCCCCCCCCce
Q 011436 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNP----VFDTVISAD-DKGIIEYWSPHTLQFPESE 95 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fsp----d~~~l~s~s-~dg~i~~Wd~~t~~~~~~~ 95 (485)
.+|+++.+++++.|++|++||+...+.+++.++.. ...+.+++||| |++++++++ .+++|.+||..++++.+..
T Consensus 186 ~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i 264 (543)
T 1nir_A 186 MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 264 (543)
T ss_dssp ECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee
Confidence 36788888888889999999992116788888874 45679999999 999998888 5899999998876542210
Q ss_pred --------------------e--------------------EEEEcCCCceE--EeecCCccEEEEEEcCCCCEEEEEe-
Q 011436 96 --------------------V--------------------SFRLKSDTNLF--EILKSKTTVSAIEVSPDGKQFSITS- 132 (485)
Q Consensus 96 --------------------~--------------------~~~~~~~~~l~--~~~~~~~~v~~i~~spdg~~lat~s- 132 (485)
+ .|++...+.+. .+ .+...+.+++|+|||++|++++
T Consensus 265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG
T ss_pred cccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec
Confidence 0 01111111111 11 2334567789999999876655
Q ss_pred CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEE-ECCC-CCEEEEec
Q 011436 133 PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAI-FDES-SNFLIYAT 210 (485)
Q Consensus 133 ~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~-fd~~-g~~l~~~s 210 (485)
.+++|++||+.+++++.+++.... .. +-..+. ++|+ |++++++.
T Consensus 344 ~~~~v~v~D~~tg~l~~~i~~g~~--------------------------------ph--~g~g~~~~~p~~g~~~~s~~ 389 (543)
T 1nir_A 344 NSNKVAVIDSKDRRLSALVDVGKT--------------------------------PH--PGRGANFVHPKYGPVWSTSH 389 (543)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSS--------------------------------BC--CTTCEEEEETTTEEEEEEEB
T ss_pred CCCeEEEEECCCCeEEEeeccCCC--------------------------------CC--CCCCcccCCCCCccEEEecc
Confidence 589999999999999887742000 00 001122 4677 66666665
Q ss_pred C--CCeEEEEccc-------CeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeee--
Q 011436 211 L--LGIKIVNLHT-------NKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAF-- 279 (485)
Q Consensus 211 ~--~~i~v~d~~t-------g~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~-- 279 (485)
. ..|.+||+.+ +++++++..+.....|+.+ .||+..|.+++
T Consensus 390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~----------------------------~pdg~~l~v~~~~ 441 (543)
T 1nir_A 390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT----------------------------HPKSSHLYVDTTF 441 (543)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEEC----------------------------CTTCCEEEECCTT
T ss_pred CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEc----------------------------CCCCCcEEEecCC
Confidence 2 4599999998 8999999887633344332 17877888876
Q ss_pred -----cCceEEEEecCCCC
Q 011436 280 -----KRHRIYLFSRREPE 293 (485)
Q Consensus 280 -----~d~~i~~f~~~~~~ 293 (485)
.+.+|.+|+....+
T Consensus 442 ~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 442 NPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp CSSHHHHTCEEEEETTCTT
T ss_pred CCCcccCceEEEEECCCCC
Confidence 37899999986443
No 175
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.58 E-value=2e-13 Score=130.19 Aligned_cols=187 Identities=10% Similarity=0.057 Sum_probs=125.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCC-CcceEEEecC-CCCeEEEEEcCCCCEEEEEe--CCCcEEEEc--CCCCCCCCce
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADS-NEPLISKKVH-MGPVKVMRYNPVFDTVISAD--DKGIIEYWS--PHTLQFPESE 95 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~-~~~~~~l~~h-~~~V~~l~fspd~~~l~s~s--~dg~i~~Wd--~~t~~~~~~~ 95 (485)
+|++.++++++ ++.|++||+. + +++...+.+| ...|.+++|+|++++|++++ .++..++|. ..+.+
T Consensus 50 spdg~~l~~~~-~~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~----- 121 (297)
T 2ojh_A 50 SPDGKYLLLNS-EGLLYRLSLA--GDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT----- 121 (297)
T ss_dssp CTTSSEEEEEE-TTEEEEEESS--SCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-----
T ss_pred CCCCCEEEEEc-CCeEEEEeCC--CCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-----
Confidence 56777777775 7899999997 5 5565555565 47889999999999999998 445677764 33321
Q ss_pred eEEEEcCCCceEEeecCCccEEEEEEcCCCCEEE-EEeCCCcEEEEEC--CCCcEEEEeccchhHHHhhhcCCCcccccc
Q 011436 96 VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS-ITSPDRRIRVFWF--RTGKLRRVYDESLEVAQDLQRSDAPLYRLE 172 (485)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~la-t~s~D~~I~iwd~--~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 172 (485)
...+..+. .+.+++|+|||++|+ +++.|+.++||++ .+++.. .+..
T Consensus 122 ----------~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~------------------- 170 (297)
T 2ojh_A 122 ----------PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-RLTH------------------- 170 (297)
T ss_dssp ----------CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-ECCC-------------------
T ss_pred ----------eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-Eccc-------------------
Confidence 22233333 488899999999888 7778999999985 344432 2211
Q ss_pred cccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC-CC-eEEEEcc-cCeEEEeecccCCccceeeeeeccCCccC
Q 011436 173 AIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LG-IKIVNLH-TNKVSRILGKVENNDRFLRIALYQGDRSS 249 (485)
Q Consensus 173 ~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~-i~v~d~~-tg~~v~~~~~~~~~~r~~~~s~~~~~~~~ 249 (485)
....+.+++|+|+|++|++++. ++ +++|++. .+..++.+..+...... ..|.
T Consensus 171 -----------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~s----- 225 (297)
T 2ojh_A 171 -----------------GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWF---PHPS----- 225 (297)
T ss_dssp -----------------SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEE---EEEC-----
T ss_pred -----------------CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCC---eEEC-----
Confidence 0112358899999999888764 44 8999886 45555666554421111 1121
Q ss_pred cceeeeeccccccccCCCCCCCCeEEEeeecC-----------ceEEEEecCCC
Q 011436 250 KKVRKIPAAAANANESKEPFSDPTLLCCAFKR-----------HRIYLFSRREP 292 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d-----------~~i~~f~~~~~ 292 (485)
||+..|+.++.| .+||+|+....
T Consensus 226 --------------------~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 226 --------------------PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp --------------------TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred --------------------CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 677767766654 78999987543
No 176
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.56 E-value=1.9e-12 Score=126.68 Aligned_cols=153 Identities=8% Similarity=0.038 Sum_probs=106.9
Q ss_pred CCcceEEEEeCCC-C--eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEE-EEEeCCCc-EEEEcCCCCCCCCcee
Q 011436 22 DVKAGLAISDRNS-S--FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGI-IEYWSPHTLQFPESEV 96 (485)
Q Consensus 22 ~~~~~l~vs~s~d-~--~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l-~s~s~dg~-i~~Wd~~t~~~~~~~~ 96 (485)
+|++..++++..+ + .|++||+. +++.+..+..+. ...+++|+||++++ ++...++. |.+|++........
T Consensus 92 s~dg~~l~~~~~~~~~~~i~v~d~~--~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~-- 166 (331)
T 3u4y_A 92 TPDDQFAVTVTGLNHPFNMQSYSFL--KNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD-- 166 (331)
T ss_dssp CTTSSEEEECCCSSSSCEEEEEETT--TTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE--
T ss_pred CCCCCEEEEecCCCCcccEEEEECC--CCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee--
Confidence 4566666655444 3 99999997 677777776544 46899999999854 55566688 99998764221100
Q ss_pred EEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcE---EEEeccchhHHHhhhcCCCcccccc
Q 011436 97 SFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKL---RRVYDESLEVAQDLQRSDAPLYRLE 172 (485)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 172 (485)
. ... .......+.+++|+|||++++.++ .++.|++||+.+++. +..+..
T Consensus 167 ---~----~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~------------------- 219 (331)
T 3u4y_A 167 ---T----GQE-FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT------------------- 219 (331)
T ss_dssp ---E----EEE-EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-------------------
T ss_pred ---c----CCc-cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-------------------
Confidence 0 011 113334579999999999665554 689999999999987 555532
Q ss_pred cccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC-C-CeEEEEcccCeE
Q 011436 173 AIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-L-GIKIVNLHTNKV 224 (485)
Q Consensus 173 ~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~-~i~v~d~~tg~~ 224 (485)
......++|+|+|++|++++. + .|.+||+.++++
T Consensus 220 ------------------~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 220 ------------------NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp ------------------SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred ------------------CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 012357899999998877664 3 499999999987
No 177
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.56 E-value=2.8e-13 Score=132.35 Aligned_cols=152 Identities=11% Similarity=0.034 Sum_probs=115.0
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceEEEec-CCC-CeEEEEEcCCCCEE-EEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 26 GLAISDRNSSFVHIYDARADSNEPLISKKV-HMG-PVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~-h~~-~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.++++++.+++|++||+. +++.+..+.. +.. .+.+++|+|+++.+ ++++.++.|.+||+.+++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE--KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL---------- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETT--TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE----------
T ss_pred cEEEEcCCCCeEEEEECC--CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE----------
Confidence 367777789999999997 6777877763 322 47899999999765 56667899999999875432
Q ss_pred CCceEEeec-----CCccEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCcEEEEeccchhHHHhhhcCC
Q 011436 103 DTNLFEILK-----SKTTVSAIEVSPDGKQFSITS------------PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD 165 (485)
Q Consensus 103 ~~~l~~~~~-----~~~~v~~i~~spdg~~lat~s------------~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~ 165 (485)
..+.. +...+.+++|+|||+++++++ .++.|++||+.+++.++.+..
T Consensus 70 ----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------------ 133 (337)
T 1pby_B 70 ----GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------------ 133 (337)
T ss_dssp ----EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------------
T ss_pred ----eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC------------
Confidence 11221 112467899999999998886 679999999999988776632
Q ss_pred CcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeeccc
Q 011436 166 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~ 231 (485)
......++|+|+|++|+++ ...|.+||+.++++++.+..+
T Consensus 134 -------------------------~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~ 173 (337)
T 1pby_B 134 -------------------------PRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQ 173 (337)
T ss_dssp -------------------------CSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECST
T ss_pred -------------------------CCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeecc
Confidence 0112478899999988888 455999999999998777544
No 178
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.56 E-value=3.5e-13 Score=131.95 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=101.4
Q ss_pred CCcce-EEEEeCCCCeEEEEEcCCCCC--cceEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEcCCCCCCCCceeE
Q 011436 22 DVKAG-LAISDRNSSFVHIYDARADSN--EPLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 22 ~~~~~-l~vs~s~d~~I~iwd~~~~~~--~~~~~l~~h~~~V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
+|++. +++++..++.|++|++...++ ..+..+..+. .+.+++|+|+++.++.++ .++.|.+||+.++..
T Consensus 46 spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~------ 118 (343)
T 1ri6_A 46 SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP------ 118 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE------
T ss_pred CCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc------
Confidence 45555 455554459999999962222 3455565554 789999999999776665 588999998742110
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CcEEEEeccchhHHHhhhcCCCccccccccc
Q 011436 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
...+..+.. ...+.+++|+|||+++++++ .|+.|++||+.+ ++......... .
T Consensus 119 -----~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--------------~----- 173 (343)
T 1ri6_A 119 -----VGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV--------------T----- 173 (343)
T ss_dssp -----EEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE--------------E-----
T ss_pred -----ccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc--------------c-----
Confidence 112222333 34588899999999888887 899999999987 76532210000 0
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCCEEEEec-CCC-eEEEEcc
Q 011436 176 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT-LLG-IKIVNLH 220 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s-~~~-i~v~d~~ 220 (485)
.........++|+|+|++|++++ .++ |++|++.
T Consensus 174 ------------~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 174 ------------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 208 (343)
T ss_dssp ------------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred ------------cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 00011224789999999887665 444 9999994
No 179
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.55 E-value=7.5e-13 Score=130.41 Aligned_cols=182 Identities=10% Similarity=0.025 Sum_probs=129.0
Q ss_pred CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecC
Q 011436 34 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDT-VISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS 112 (485)
Q Consensus 34 d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~-l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~ 112 (485)
++.|.+||.. +++.++.+... ..+.+++|+|+++. +++...++.|.+||.++++.. ..+..+
T Consensus 68 ~~~v~~~d~~--~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--------------~~~~~~ 130 (353)
T 3vgz_A 68 GGVVYRLDPV--TLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVK--------------GRLVLD 130 (353)
T ss_dssp SEEEEEECTT--TCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEE--------------EEEESC
T ss_pred CccEEEEcCC--CCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeE--------------EEEecC
Confidence 6799999997 67777777643 34788999999995 455666899999999875432 223322
Q ss_pred C---------ccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 113 K---------TTVSAIEVSPDGKQFSITS--PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 113 ~---------~~v~~i~~spdg~~lat~s--~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
. ..+.+++|+|||+++++++ .++.|.+||+.+++.++.+..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------------------- 183 (353)
T 3vgz_A 131 DRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT--------------------------- 183 (353)
T ss_dssp CCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC---------------------------
T ss_pred CCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC---------------------------
Confidence 2 1278899999999887776 4889999999999988777420
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccc-eeeeeeccCCccCcceeeeeccc
Q 011436 182 VEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDR-FLRIALYQGDRSSKKVRKIPAAA 259 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r-~~~~s~~~~~~~~~~~~~~~~~~ 259 (485)
......++|+|+|++|++++.++ |.+||..++++++.+........ +..-..|.
T Consensus 184 ---------~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s--------------- 239 (353)
T 3vgz_A 184 ---------GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLD--------------- 239 (353)
T ss_dssp ---------CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE---------------
T ss_pred ---------CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC---------------
Confidence 01124789999999999988776 99999999998877654221111 10001111
Q ss_pred cccccCCCCCCCC-eEEEeeecCceEEEEecCCCC
Q 011436 260 ANANESKEPFSDP-TLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 260 ~~~~~~~~~~~d~-~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+|+ .++++...+++|++|+....+
T Consensus 240 ----------~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 240 ----------TARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp ----------TTTTEEEEEESSSSEEEEEETTTCC
T ss_pred ----------CCCCEEEEEeCCCCEEEEEECCCCc
Confidence 454 467777778999999876544
No 180
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=157.03 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=103.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCC---CeEEEEEcCCCCEEEEEeC---------CCcEEEEcCCCC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG---PVKVMRYNPVFDTVISADD---------KGIIEYWSPHTL 89 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~---~V~~l~fspd~~~l~s~s~---------dg~i~~Wd~~t~ 89 (485)
+|++.+++++ .|++|++||+. ++++...+.+|.. .|.+++|||||++|++++. |+.|++||+.++
T Consensus 24 s~dg~~~~~~-~d~~i~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 24 ISGQEYLHQS-ADNNIVLYNIE--TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp SSSSEEEEEC-TTSCEEEEESS--SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred CCCCeEEEEc-CCCCEEEEEcC--CCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 4566666665 58999999997 6666666666544 4899999999999998876 789999999875
Q ss_pred CCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEec-cchhHHHhhhcCCCcc
Q 011436 90 QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYD-ESLEVAQDLQRSDAPL 168 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~-~~~~~i~~~~~~~~~~ 168 (485)
+.... ..+ ...+.+++|||||++||.++ |+.|++||+.++++.+... ++... +
T Consensus 101 ~~~~~------------~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~----------v 154 (719)
T 1z68_A 101 EFVRG------------NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENK----------I 154 (719)
T ss_dssp EECCS------------SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTT----------E
T ss_pred ccccc------------eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCC----------e
Confidence 43110 011 13478899999999999876 8899999999998765331 11100 0
Q ss_pred cccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC
Q 011436 169 YRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL 212 (485)
Q Consensus 169 ~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~ 212 (485)
+. .. ...+ .+.++ .....+++|||||++|++++.+
T Consensus 155 ~~--g~--~~~v-~~ee~----~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 155 FN--GI--PDWV-YEEEM----LATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp EE--SS--CCHH-HHHHT----TCSSCCEEECTTSSEEEEEEEE
T ss_pred Ec--cc--ccce-eeeec----ccCcccEEECCCCCEEEEEEEC
Confidence 00 00 0000 01111 1122489999999999998854
No 181
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.54 E-value=4.5e-13 Score=131.64 Aligned_cols=230 Identities=11% Similarity=0.014 Sum_probs=139.6
Q ss_pred CCCeEEEEEeCCCCcc-eEEEEeCCCCeEEEEEcCCCCCcceEEEecCC------CCeEEEEEcCCCCEEEEEeCC----
Q 011436 10 IPGAVEWVYKQGDVKA-GLAISDRNSSFVHIYDARADSNEPLISKKVHM------GPVKVMRYNPVFDTVISADDK---- 78 (485)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~------~~V~~l~fspd~~~l~s~s~d---- 78 (485)
.|..++| +|++ .+++++..++.|.+||+. +++.+..+..+. ..+.+++|+||++++++++.+
T Consensus 44 ~~~~~~~-----s~dg~~~~v~~~~~~~i~~~d~~--t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 44 GPGTAMM-----APDNRTAYVLNNHYGDIYGIDLD--TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 116 (349)
T ss_dssp SSCEEEE-----CTTSSEEEEEETTTTEEEEEETT--TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred CCceeEE-----CCCCCEEEEEeCCCCcEEEEeCC--CCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccc
Confidence 4555544 3454 466777789999999997 677777776332 337889999999999988865
Q ss_pred --------CcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 011436 79 --------GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 79 --------g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~ 150 (485)
+.|.+||+.+++.... +..+. +...+.+++|+|||+ +.+++. .|++||+.+++++..
T Consensus 117 ~~~~~~~~~~i~~~d~~~~~~~~~-----------~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~ 181 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTADGLEAKP-----------VRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVA 181 (349)
T ss_dssp SSCEEECCCEEEEEEGGGGGGBCC-----------SEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEE
T ss_pred ccccccCCCeEEEEECCCccccce-----------eeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceecc
Confidence 8999999877443221 11222 233578899999999 555444 499999999999887
Q ss_pred eccchhHHHhh-------h---cCCCccccc-ccccc------------cchhhh----------hHhhhccCCCCCceE
Q 011436 151 YDESLEVAQDL-------Q---RSDAPLYRL-EAIDF------------GRRMAV----------EKEIEKTETAPPSNA 197 (485)
Q Consensus 151 ~~~~~~~i~~~-------~---~~~~~~~~~-~~~~~------------g~~~~~----------~~~i~~~~~~~~~~i 197 (485)
+.......... . ..+...... ....+ +..... ..++. .......++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 260 (349)
T 1jmx_B 182 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-DLTELYFTG 260 (349)
T ss_dssp ECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-ECSSCEEEE
T ss_pred ccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-cCCCcceee
Confidence 74321000000 0 000000000 00000 000000 00000 112234688
Q ss_pred EECC-CCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEE
Q 011436 198 IFDE-SSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLC 276 (485)
Q Consensus 198 ~fd~-~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 276 (485)
+|+| +|++|+++ ...|.+||+.++++++.+.... ....+. | .+|+..|+
T Consensus 261 ~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~-~~~~~~---~-------------------------s~dg~~l~ 310 (349)
T 1jmx_B 261 LRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDH-TYYCVA---F-------------------------DKKGDKLY 310 (349)
T ss_dssp EECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSS-CCCEEE---E-------------------------CSSSSCEE
T ss_pred EecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCC-CccceE---E-------------------------CCCCCEEE
Confidence 9999 99999888 5559999999999888775433 122111 1 15655555
Q ss_pred eeecCceEEEEecCCC
Q 011436 277 CAFKRHRIYLFSRREP 292 (485)
Q Consensus 277 s~~~d~~i~~f~~~~~ 292 (485)
++..+++|++|+....
T Consensus 311 ~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 311 LGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EESBSSEEEEEETTTT
T ss_pred EecCCCeEEEEecccc
Confidence 6778899999987543
No 182
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.53 E-value=9.4e-13 Score=130.17 Aligned_cols=202 Identities=14% Similarity=0.162 Sum_probs=124.8
Q ss_pred CCcceEEEEeC--CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEcCCC-CCCCCceeE
Q 011436 22 DVKAGLAISDR--NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHT-LQFPESEVS 97 (485)
Q Consensus 22 ~~~~~l~vs~s--~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t-~~~~~~~~~ 97 (485)
+|++++++++. .++.|++||+..+..+.+..+..|...+..++|+||+++|++++ .++.|.+||+.. +..
T Consensus 48 spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~------ 121 (347)
T 3hfq_A 48 SAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL------ 121 (347)
T ss_dssp CTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE------
T ss_pred ccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe------
Confidence 45666555543 36899999996222235556566888899999999999888887 789999998853 111
Q ss_pred EEEcCCCceEEeec---------CCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEEeccchhHHHhhhcCCCc
Q 011436 98 FRLKSDTNLFEILK---------SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR-TGKLRRVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 98 ~~~~~~~~l~~~~~---------~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~-tg~~~~~~~~~~~~i~~~~~~~~~ 167 (485)
..+..+.. +...+.+++|+|||+.+++...++.|++||+. +|++.....-
T Consensus 122 ------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-------------- 181 (347)
T 3hfq_A 122 ------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL-------------- 181 (347)
T ss_dssp ------EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE--------------
T ss_pred ------eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE--------------
Confidence 01111111 22358899999999977776778999999998 6654322100
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC-CC-eEEEEccc--CeEE--EeecccCCccceeeee
Q 011436 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LG-IKIVNLHT--NKVS--RILGKVENNDRFLRIA 241 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~-i~v~d~~t--g~~v--~~~~~~~~~~r~~~~s 241 (485)
. .........++|+|+|++|++++. .+ +++|++.. |++. ..+......
T Consensus 182 --~-----------------~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~------- 235 (347)
T 3hfq_A 182 --T-----------------MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD------- 235 (347)
T ss_dssp --E-----------------CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT-------
T ss_pred --E-----------------cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC-------
Confidence 0 000011246899999998777654 33 99999874 6542 122111100
Q ss_pred eccCCccCcceeeeeccccccccCCCCCCCCe-EEEeeecCceEEEEecC
Q 011436 242 LYQGDRSSKKVRKIPAAAANANESKEPFSDPT-LLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-l~~s~~~d~~i~~f~~~ 290 (485)
+.+ ......+.+ .||+. ++++...+++|++|...
T Consensus 236 -~~~---~~~~~~i~~-----------spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 236 -YTA---HNGAAAIRL-----------SHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp -CCS---CCEEEEEEE-----------CTTSCEEEEEEETTTEEEEEEEC
T ss_pred -CCC---CCcceeEEE-----------CCCCCEEEEEeCCCCEEEEEEEC
Confidence 000 000111111 27776 55788889999999764
No 183
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.52 E-value=2.7e-13 Score=144.25 Aligned_cols=157 Identities=10% Similarity=-0.078 Sum_probs=113.1
Q ss_pred EeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEcCCCCCCCC
Q 011436 18 YKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQFPE 93 (485)
Q Consensus 18 ~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d----g~i~~Wd~~t~~~~~ 93 (485)
..+++++..++++++.++.+ |||+. ++++.. +..+.. .+++|||||++|++++.| +.|.+||+.+++
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~-l~d~~--~g~~~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~--- 186 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVA-LYALD--GGGLRE-LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG--- 186 (582)
T ss_dssp EEEECSSCEEEEEECSSCEE-EEEEE--TTEEEE-EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC---
T ss_pred eeCCCCCeEEEEecCCCCce-EEEcc--CCcEEE-eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC---
Confidence 33445566777887766655 99997 555443 333333 789999999999988877 789999987643
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011436 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR--RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~--~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
+..+..|...+.+++|||||++|+++..|+ .|++||+.++++. .+.++...+....
T Consensus 187 ------------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~--------- 244 (582)
T 3o4h_A 187 ------------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR--------- 244 (582)
T ss_dssp ------------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC---------
T ss_pred ------------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh---------
Confidence 234677888899999999999999888888 8999999999887 5544322222110
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEE
Q 011436 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSR 226 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~ 226 (485)
........|+|||+++++++.++ +++|++ |++++
T Consensus 245 -------------------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 245 -------------------PTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp -------------------CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred -------------------hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 00012345999998888888777 999999 87765
No 184
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.52 E-value=6.5e-14 Score=152.56 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=108.6
Q ss_pred CCcceEEEEeCCC---------CeEEEEEcCCCCCcceEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCC
Q 011436 22 DVKAGLAISDRNS---------SFVHIYDARADSNEPLISKK---VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTL 89 (485)
Q Consensus 22 ~~~~~l~vs~s~d---------~~I~iwd~~~~~~~~~~~l~---~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~ 89 (485)
+|+++.+++++.+ +.|++||+. ++++ ..+. +|...+.+++|||||+.|+.++. +.|.+||+.++
T Consensus 69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~--~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g 144 (723)
T 1xfd_A 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIP--HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK 144 (723)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESS--SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred CCCCCEEEEEecCccceeecceeeEEEEECC--CCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence 6778877777653 788899997 4443 3443 45566899999999999999886 79999999875
Q ss_pred CCCCceeEEEEcCCCceEEeecCCc------------------cEEEEEEcCCCCEEEEEeCCC----------------
Q 011436 90 QFPESEVSFRLKSDTNLFEILKSKT------------------TVSAIEVSPDGKQFSITSPDR---------------- 135 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~------------------~v~~i~~spdg~~lat~s~D~---------------- 135 (485)
+... ....+.. .+.+++|||||++||+++.|.
T Consensus 145 ~~~~--------------~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 210 (723)
T 1xfd_A 145 QAIR--------------VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY 210 (723)
T ss_dssp CCEE--------------EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred ceEE--------------EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCC
Confidence 4321 1222222 237899999999999988653
Q ss_pred ------------------cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceE
Q 011436 136 ------------------RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNA 197 (485)
Q Consensus 136 ------------------~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i 197 (485)
.|++||+.++++.+.+..+... ......+.++
T Consensus 211 ~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~------------------------------~~~~~~~~~~ 260 (723)
T 1xfd_A 211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP------------------------------RMREYYITMV 260 (723)
T ss_dssp CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG------------------------------GGSSEEEEEE
T ss_pred CcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC------------------------------CCccceeEEE
Confidence 5666666665543333210000 0001123578
Q ss_pred EECCCCCEEEEecCC-----CeEEEEcccCeEEEeecc
Q 011436 198 IFDESSNFLIYATLL-----GIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 198 ~fd~~g~~l~~~s~~-----~i~v~d~~tg~~v~~~~~ 230 (485)
+|+|||++|++.+.. .|.+||+.+|++.+.+..
T Consensus 261 ~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 298 (723)
T 1xfd_A 261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED 298 (723)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe
Confidence 999999999776532 389999999998777644
No 185
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.51 E-value=8.2e-13 Score=129.77 Aligned_cols=158 Identities=18% Similarity=0.086 Sum_probs=113.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCC-CCeEEEEEcCCCCEE-EEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHM-GPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~-~~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++++.++++++.+++|++||+. +++.++++..+. ..+..++|+|+++.+ ++.+.++.|.+||+.+++..
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~------- 78 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVA--SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT------- 78 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETT--TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-------
T ss_pred cCCCEEEEEeCCCCeEEEEECC--CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE-------
Confidence 4577888888899999999997 777888887543 257899999999855 56667899999999874322
Q ss_pred EcCCCceEEeecC------CccEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCcEEEEeccchhHHHhh
Q 011436 100 LKSDTNLFEILKS------KTTVSAIEVSPDGKQFSITSPD------------RRIRVFWFRTGKLRRVYDESLEVAQDL 161 (485)
Q Consensus 100 ~~~~~~l~~~~~~------~~~v~~i~~spdg~~lat~s~D------------~~I~iwd~~tg~~~~~~~~~~~~i~~~ 161 (485)
..+..+ ...+.+++|+|||++|++++.+ +.|++||+.+++..+.+..
T Consensus 79 -------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-------- 143 (349)
T 1jmx_B 79 -------FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT-------- 143 (349)
T ss_dssp -------EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--------
T ss_pred -------EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--------
Confidence 223211 1236789999999999998866 8999999988653211100
Q ss_pred hcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeeccc
Q 011436 162 QRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 162 ~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~ 231 (485)
. .....+.+++|+|+|+ |++++. .|.+||+.+++++..+..+
T Consensus 144 ------------------------~--~~~~~~~~~~~s~dg~-l~~~~~-~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 144 ------------------------F--PMPRQVYLMRAADDGS-LYVAGP-DIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp ------------------------E--ECCSSCCCEEECTTSC-EEEESS-SEEEECTTTCCEEEEECST
T ss_pred ------------------------c--cCCCcccceeECCCCc-EEEccC-cEEEEeCCCCceecccccc
Confidence 0 0011245889999999 555443 3999999999998877543
No 186
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.50 E-value=9.3e-14 Score=147.86 Aligned_cols=203 Identities=13% Similarity=0.011 Sum_probs=130.0
Q ss_pred CCcceEEEEeCC-CCeEEEEEcCCCCCcceEEEecCC-CCeEEEEEcCCCCEEEEEeC---CCcEEEE--cC--CCCCCC
Q 011436 22 DVKAGLAISDRN-SSFVHIYDARADSNEPLISKKVHM-GPVKVMRYNPVFDTVISADD---KGIIEYW--SP--HTLQFP 92 (485)
Q Consensus 22 ~~~~~l~vs~s~-d~~I~iwd~~~~~~~~~~~l~~h~-~~V~~l~fspd~~~l~s~s~---dg~i~~W--d~--~t~~~~ 92 (485)
+|+++.++.++. |++++||++. .++ ...+..|. ..|.+++|||| +++++++. +...++| +. ......
T Consensus 30 ~~DG~~la~~s~~~g~~~lw~~~--~g~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~ 105 (582)
T 3o4h_A 30 VVDGDKLLVVGFSEGSVNAYLYD--GGE-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR 105 (582)
T ss_dssp EETTTEEEEEEEETTEEEEEEEE--TTE-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE
T ss_pred CCCCCeEEEEEccCCceeEEEEc--CCC-cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcccc
Confidence 457777776665 9999999985 444 45556555 68999999999 88888776 5566776 33 211100
Q ss_pred ------Cc--------------------eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC----CcEEEEEC
Q 011436 93 ------ES--------------------EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD----RRIRVFWF 142 (485)
Q Consensus 93 ------~~--------------------~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D----~~I~iwd~ 142 (485)
.. ...|++.++.. ..+..+.. .+++|||||+++|+++.| ..|++||+
T Consensus 106 l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~-~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~ 182 (582)
T 3o4h_A 106 LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL-RELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL 182 (582)
T ss_dssp CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE-EEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE-EEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence 00 01133332221 12222222 688999999999988877 78999999
Q ss_pred CCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC---eEEEEc
Q 011436 143 RTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG---IKIVNL 219 (485)
Q Consensus 143 ~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~---i~v~d~ 219 (485)
.+|++. .+.++ .....+++|||||++|+++..++ |.+||+
T Consensus 183 ~~g~~~-~l~~~------------------------------------~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~ 225 (582)
T 3o4h_A 183 SSGGLR-VFDSG------------------------------------EGSFSSASISPGMKVTAGLETAREARLVTVDP 225 (582)
T ss_dssp TTCCCE-EECCS------------------------------------SCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred CCCCce-EeecC------------------------------------CCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence 998864 33221 01125789999999999766554 899999
Q ss_pred ccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 220 HTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 220 ~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.++++. .+.+++.....+. ... .. ...+ .||+.++++++.|++++||.-
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~--~~~-------~~----------~~~~-spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 226 RDGSVE-DLELPSKDFSSYR--PTA-------IT----------WLGY-LPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp TTCCEE-ECCCSCSHHHHHC--CSE-------EE----------EEEE-CTTSCEEEEEEETTEEEEEET
T ss_pred CCCcEE-EccCCCcChhhhh--hcc-------cc----------ceeE-cCCCcEEEEEEcCCcEEEEEE
Confidence 999887 6666653322111 000 00 0001 177788888888899999876
No 187
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.49 E-value=2.2e-13 Score=148.06 Aligned_cols=161 Identities=12% Similarity=0.062 Sum_probs=108.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCC-----CCCCCcee
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHT-----LQFPESEV 96 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t-----~~~~~~~~ 96 (485)
+|+..++++. +++|++||+. +++ ...+..|...+.+++|||||+.|+++ .|+.|.+||+.+ ++....
T Consensus 90 spd~~~~~~~--~~~i~~~d~~--~~~-~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~-- 161 (706)
T 2z3z_A 90 AGRGLVVLFT--QGGLVGFDML--ARK-VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV-- 161 (706)
T ss_dssp TTTTEEEEEE--TTEEEEEETT--TTE-EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES--
T ss_pred CCCCeEEEEE--CCEEEEEECC--CCc-eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe--
Confidence 4456666664 5999999996 444 34556677889999999999999985 679999999876 443211
Q ss_pred EEEEcCCC-ceE----EeecCCccEEEEEEcCCCCEEEEEe---------------------------------CCCcEE
Q 011436 97 SFRLKSDT-NLF----EILKSKTTVSAIEVSPDGKQFSITS---------------------------------PDRRIR 138 (485)
Q Consensus 97 ~~~~~~~~-~l~----~~~~~~~~v~~i~~spdg~~lat~s---------------------------------~D~~I~ 138 (485)
. ..+. .+. ..+.+...+.+++|||||++||+++ .+..|+
T Consensus 162 ~---~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 162 T---IDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp C---SCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred c---cCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 0 0000 000 0011112257899999999999998 456799
Q ss_pred EEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC------
Q 011436 139 VFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL------ 212 (485)
Q Consensus 139 iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~------ 212 (485)
+||+.+++....... ......+.+++|+|||++|++++.+
T Consensus 239 ~~d~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 284 (706)
T 2z3z_A 239 IYHLATGKTVYLQTG----------------------------------EPKEKFLTNLSWSPDENILYVAEVNRAQNEC 284 (706)
T ss_dssp EEETTTTEEEECCCC----------------------------------SCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred EEECCCCceEeeccC----------------------------------CCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence 999998876433210 0001123588999999999987653
Q ss_pred CeEEEEcccCeEEEe
Q 011436 213 GIKIVNLHTNKVSRI 227 (485)
Q Consensus 213 ~i~v~d~~tg~~v~~ 227 (485)
.|.+||+.+|+.++.
T Consensus 285 ~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 285 KVNAYDAETGRFVRT 299 (706)
T ss_dssp EEEEEETTTCCEEEE
T ss_pred EEEEEECCCCceeeE
Confidence 589999999944433
No 188
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.48 E-value=7.2e-13 Score=126.25 Aligned_cols=153 Identities=10% Similarity=0.107 Sum_probs=106.0
Q ss_pred CCcceEEEEeC--CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 22 DVKAGLAISDR--NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 22 ~~~~~l~vs~s--~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+|++..++.++ .++.++||.+...++ ....+..+. .+.+++|+||++.|+ +++.|+.+++|+....
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~--------- 161 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGG-TPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID--------- 161 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCC-CCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETT---------
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCC-ceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECC---------
Confidence 45666666665 345666666542133 345555443 589999999999877 7889999999974310
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCcEEEEeccchhHHHhhhcCCCcccccccccc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFR-TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDF 176 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~-tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 176 (485)
......+..+...+.+++|+|||++|+.++ .|+.++||++. .+..+..+..+
T Consensus 162 ----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------------- 215 (297)
T 2ojh_A 162 ----SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS---------------------- 215 (297)
T ss_dssp ----TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC----------------------
T ss_pred ----CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC----------------------
Confidence 122344566777899999999999888777 59999999875 44444444221
Q ss_pred cchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC------------CeEEEEcccCeEE
Q 011436 177 GRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL------------GIKIVNLHTNKVS 225 (485)
Q Consensus 177 g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~------------~i~v~d~~tg~~v 225 (485)
...+..++|+|+|++|++++.+ .|.+||+.+++..
T Consensus 216 --------------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 216 --------------AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp --------------SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred --------------CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 0112478999999999998764 2899999888654
No 189
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.47 E-value=2.2e-12 Score=140.23 Aligned_cols=165 Identities=12% Similarity=0.053 Sum_probs=114.4
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCC-----CcceEEEecCCCC--------------eEEEEEcCCCCEEEEEe------
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADS-----NEPLISKKVHMGP--------------VKVMRYNPVFDTVISAD------ 76 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~-----~~~~~~l~~h~~~--------------V~~l~fspd~~~l~s~s------ 76 (485)
+|++..++.+ .|+.|++||+. + ++..+....+... +.+++|||||+.|++++
T Consensus 129 SpdG~~la~~-~~~~i~v~~~~--~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~ 205 (706)
T 2z3z_A 129 SPVGDRVAYV-RNHNLYIARGG--KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMV 205 (706)
T ss_dssp CTTSSEEEEE-ETTEEEEEECB--CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTS
T ss_pred CCCCCEEEEE-ECCeEEEEecC--cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCC
Confidence 6777777765 57999999997 4 5544433334333 48999999999999987
Q ss_pred ---------------------------CCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEE
Q 011436 77 ---------------------------DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 129 (485)
Q Consensus 77 ---------------------------~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~la 129 (485)
.+..|.+||+.+++... +.....|...+.+++|||||++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~------------~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 206 KPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY------------LQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp CCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE------------CCCCSCTTCEEEEEEECTTSSEEE
T ss_pred ceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe------------eccCCCCceeEeeEEEECCCCEEE
Confidence 34678888887643211 001124567799999999999999
Q ss_pred EEeCCC-----cEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECC--C
Q 011436 130 ITSPDR-----RIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE--S 202 (485)
Q Consensus 130 t~s~D~-----~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~--~ 202 (485)
+++.|+ .|++||+.+++..+.+.... .. .......+++|+| +
T Consensus 274 ~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~--------~~-----------------------~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 274 VAEVNRAQNECKVNAYDAETGRFVRTLFVET--------DK-----------------------HYVEPLHPLTFLPGSN 322 (706)
T ss_dssp EEEECTTSCEEEEEEEETTTCCEEEEEEEEE--------CS-----------------------SCCCCCSCCEECTTCS
T ss_pred EEEeCCCCCeeEEEEEECCCCceeeEEEEcc--------CC-----------------------CeECccCCceeecCCC
Confidence 988776 99999999995444431100 00 0001124789999 9
Q ss_pred CCEEEEecCCC-eEEEEcc-cCeEEEeecccC
Q 011436 203 SNFLIYATLLG-IKIVNLH-TNKVSRILGKVE 232 (485)
Q Consensus 203 g~~l~~~s~~~-i~v~d~~-tg~~v~~~~~~~ 232 (485)
|++|++++.++ ++||.+. +++.++.+..+.
T Consensus 323 g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 323 NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp SEEEEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred CEEEEEEccCCccEEEEEECCCCEEEecCCCC
Confidence 99998888776 8999876 677777776554
No 190
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.46 E-value=6e-13 Score=145.45 Aligned_cols=189 Identities=10% Similarity=-0.014 Sum_probs=120.3
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCc--ceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 21 GDVKAGLAISDRNSSFVHIYDARADSNE--PLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
.+|++..++.++. +.|++||+. ++. .+..+..|...+.+++|||||++|+.++ ++.|.+||+.+++...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~--~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~----- 186 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLK--QEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ----- 186 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESS--SCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-----
T ss_pred ECCCCCEEEEEeC-CcEEEEECC--CCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE-----
Confidence 3678887777764 999999997 442 4556778889999999999999999988 4689999987643211
Q ss_pred EEcCCCceEEeecCCc----------------cEEEEEEcCCCCEEEEEeCCC---------------------------
Q 011436 99 RLKSDTNLFEILKSKT----------------TVSAIEVSPDGKQFSITSPDR--------------------------- 135 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~----------------~v~~i~~spdg~~lat~s~D~--------------------------- 135 (485)
....+.. .+.+++|||||++|++++.|+
T Consensus 187 ---------~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 187 ---------LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp ---------CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred ---------eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 1111111 147799999999999998776
Q ss_pred ------cEEEEECCC-CcEEEEecc--chhHHHhhhcCCCcccc---------------cccccccchhhhhHhhhccCC
Q 011436 136 ------RIRVFWFRT-GKLRRVYDE--SLEVAQDLQRSDAPLYR---------------LEAIDFGRRMAVEKEIEKTET 191 (485)
Q Consensus 136 ------~I~iwd~~t-g~~~~~~~~--~~~~i~~~~~~~~~~~~---------------~~~~~~g~~~~~~~~i~~~~~ 191 (485)
.|++||+.+ +++...... +...+..+.+ ++.-+- +.+...|... ..+..+..
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~ 333 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---VLAHETSP 333 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE---EEEEEECS
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE---EEEEcCCC
Confidence 899999999 886554321 2222233333 321100 0001111100 00111111
Q ss_pred C---CCceEEECCCCCEEEEecCCC-eEEEEcc-cCeEEEeecccC
Q 011436 192 A---PPSNAIFDESSNFLIYATLLG-IKIVNLH-TNKVSRILGKVE 232 (485)
Q Consensus 192 ~---~~~~i~fd~~g~~l~~~s~~~-i~v~d~~-tg~~v~~~~~~~ 232 (485)
. ...+++|+|+|++|++++.++ ++||.+. +++ ++.+..++
T Consensus 334 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~ 378 (741)
T 2ecf_A 334 TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN 378 (741)
T ss_dssp SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS
T ss_pred CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc
Confidence 1 345899999999888887776 7888765 455 66666554
No 191
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.45 E-value=9.8e-13 Score=149.79 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=119.3
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCC-CeEEEEEcCCCCEEEEEeCCCcEE-EEcCCCCCCCCceeEEEE
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMG-PVKVMRYNPVFDTVISADDKGIIE-YWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~-~V~~l~fspd~~~l~s~s~dg~i~-~Wd~~t~~~~~~~~~~~~ 100 (485)
|++..++.++ ++.|++|++. .+. ...+..|.. .+.+++|+ |++.|+.++.+..+. +||..+++
T Consensus 306 pdG~~la~~~-~~~i~~~~~~--~~~-~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~---------- 370 (1045)
T 1k32_A 306 LDGDLIAFVS-RGQAFIQDVS--GTY-VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK---------- 370 (1045)
T ss_dssp CGGGCEEEEE-TTEEEEECTT--SSB-EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC----------
T ss_pred CCCCEEEEEE-cCEEEEEcCC--CCc-eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC----------
Confidence 6776666665 7899999986 443 445677888 89999999 999999999888888 88876532
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
...+.+|...+.+++|||||++||+++.|+.|++||+.++++...+.++
T Consensus 371 -----~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~-------------------------- 419 (1045)
T 1k32_A 371 -----AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-------------------------- 419 (1045)
T ss_dssp -----EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--------------------------
T ss_pred -----ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC--------------------------
Confidence 2234467788999999999999999999999999999999987665321
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCC-----------CeEEEEcccCeEEEeecccC
Q 011436 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLL-----------GIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-----------~i~v~d~~tg~~v~~~~~~~ 232 (485)
...+.+++|+|||++|++++.+ .|++||+.+++ ++.+..+.
T Consensus 420 ----------~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 420 ----------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp ----------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred ----------CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 1123588999999999988752 49999999998 45555554
No 192
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.41 E-value=3.7e-11 Score=118.61 Aligned_cols=157 Identities=10% Similarity=0.074 Sum_probs=96.8
Q ss_pred CCcce-EEEEeCCCCeEEEEEcCC-CCCcceEEEec---------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC-CC
Q 011436 22 DVKAG-LAISDRNSSFVHIYDARA-DSNEPLISKKV---------HMGPVKVMRYNPVFDTVISADDKGIIEYWSPH-TL 89 (485)
Q Consensus 22 ~~~~~-l~vs~s~d~~I~iwd~~~-~~~~~~~~l~~---------h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~-t~ 89 (485)
+|++. +++++..+++|++||+.. +....+..+.. +...+.+++|+||++++++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 34555 555555789999999952 11223333332 12348899999999977777778999999987 32
Q ss_pred CCCCceeEEEEcCCCceEEeec-CCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCC--CcEEE--EeccchhHHHhhhc
Q 011436 90 QFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQFSIT-SPDRRIRVFWFRT--GKLRR--VYDESLEVAQDLQR 163 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~i~~spdg~~lat~-s~D~~I~iwd~~t--g~~~~--~~~~~~~~i~~~~~ 163 (485)
++. .+..+.. ....+..++|+|||++++++ ..++.|++|++.. ++... .+...
T Consensus 174 ~~~------------~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~--------- 232 (347)
T 3hfq_A 174 QLS------------EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI--------- 232 (347)
T ss_dssp CEE------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS---------
T ss_pred cEE------------EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec---------
Confidence 211 0111121 22357889999999966654 5688999999874 55421 11100
Q ss_pred CCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEec-CC-CeEEEEcc
Q 011436 164 SDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT-LL-GIKIVNLH 220 (485)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s-~~-~i~v~d~~ 220 (485)
+. + .........++|+|+|++|+++. .+ .|.+|++.
T Consensus 233 -~~----------~----------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 233 -PA----------D----------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp -CT----------T----------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred -CC----------C----------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 00 0 00001125799999999885544 34 49999986
No 193
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.41 E-value=2.4e-11 Score=121.42 Aligned_cols=158 Identities=9% Similarity=0.049 Sum_probs=100.6
Q ss_pred CCCeEEEEEcCCCCCcceEEEe----cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEcCC-CCCCCCceeEEEEcCCCce
Q 011436 33 NSSFVHIYDARADSNEPLISKK----VHMGPVKVMRYNPVFDTVISADD-KGIIEYWSPH-TLQFPESEVSFRLKSDTNL 106 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~----~h~~~V~~l~fspd~~~l~s~s~-dg~i~~Wd~~-t~~~~~~~~~~~~~~~~~l 106 (485)
.++++++|++.. +++....+. .+...+.+++|+|||+++++++. ++.|.+||+. ++++. .+
T Consensus 117 ~~g~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~------------~~ 183 (365)
T 1jof_A 117 FAGYGNVFSVSE-TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE------------LV 183 (365)
T ss_dssp SCCEEEEEEECT-TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE------------EE
T ss_pred CCceEEEEccCC-CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE------------Ee
Confidence 689999999962 344444443 25678999999999998887764 6899999987 54321 11
Q ss_pred EEee--cCCccEEEEEEcCCCCEEEEEeC-CCcEEEEECC--CCcEEE---EeccchhHHHhhhcCCCcccccccccccc
Q 011436 107 FEIL--KSKTTVSAIEVSPDGKQFSITSP-DRRIRVFWFR--TGKLRR---VYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 107 ~~~~--~~~~~v~~i~~spdg~~lat~s~-D~~I~iwd~~--tg~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
..+. .|...+.+++|||||+++++++. ++.|++|++. +|++.. .+.. + +.. . .+.
T Consensus 184 ~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~----~------~~~---~----~g~ 246 (365)
T 1jof_A 184 GSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL----I------PPG---I----PDR 246 (365)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES----S------CTT---C----CCB
T ss_pred eeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc----C------CCC---c----CCc
Confidence 1122 23456899999999999988775 7899999765 677532 1210 0 000 0 000
Q ss_pred hhhhhHhhhccCCCCCceEE-ECCCCCEEEEecC--C-----CeEEEEcc-cCeEEE
Q 011436 179 RMAVEKEIEKTETAPPSNAI-FDESSNFLIYATL--L-----GIKIVNLH-TNKVSR 226 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~-fd~~g~~l~~~s~--~-----~i~v~d~~-tg~~v~ 226 (485)
.- .+. .......++ |+|+|++|+++.. + .|++|++. +|++.+
T Consensus 247 ~~----~~~--~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 247 DP----ETG--KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp CT----TTS--SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred cc----ccc--cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence 00 000 000135789 9999999877653 3 59999986 677543
No 194
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.40 E-value=9e-11 Score=116.58 Aligned_cols=163 Identities=10% Similarity=0.149 Sum_probs=98.8
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCc---ceEEEe--c--------CCCCeEEEEEcCCCCEEEEEe-CCCcEEEEcCCCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNE---PLISKK--V--------HMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTL 89 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~---~~~~l~--~--------h~~~V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t~ 89 (485)
...++++...+++|.+|++.. .+. ....+. + +...+.+++|+||+++++.++ .++.|.+|++...
T Consensus 109 g~~l~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 109 GKNIVTANYSGGSITVFPIGQ-DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp SSEEEEEETTTTEEEEEEBCT-TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEECCCCEEEEEEeCC-CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 445677777789999999962 221 111111 1 233468899999999665554 5889999976542
Q ss_pred CCCCc-e-eEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEE--eccchhHHHhhhcC
Q 011436 90 QFPES-E-VSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRV--YDESLEVAQDLQRS 164 (485)
Q Consensus 90 ~~~~~-~-~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~~~~~--~~~~~~~i~~~~~~ 164 (485)
..... . +... +........+...+.+++|+|||+++++++ .++.|++||+.++++... +.. .
T Consensus 188 ~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~----------~ 254 (361)
T 3scy_A 188 ANADNKEKFLTK---GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA----------D 254 (361)
T ss_dssp CCTTTCCCCEEE---EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES----------C
T ss_pred CCcccccceeec---ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec----------C
Confidence 21000 0 0000 000011122344578999999999887777 689999999998765221 110 0
Q ss_pred CCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC---CeEEEEcc--cCe
Q 011436 165 DAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL---GIKIVNLH--TNK 223 (485)
Q Consensus 165 ~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~---~i~v~d~~--tg~ 223 (485)
+ ........++|+|+|++|+++... .|.+|++. +|+
T Consensus 255 ~-----------------------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~ 295 (361)
T 3scy_A 255 T-----------------------VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT 295 (361)
T ss_dssp S-----------------------SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred C-----------------------CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence 0 000112488999999998766543 49999985 565
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.40 E-value=5.3e-11 Score=114.60 Aligned_cols=191 Identities=7% Similarity=0.031 Sum_probs=139.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHM-GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~-~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.++++++.|+.|++||.+ +++.+.++..|. ..+.++.++|+|++++ +.++.|..||. +++ +.|++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~--tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-----~~W~~-- 71 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKD--TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-----ELWNI-- 71 (276)
T ss_dssp CCEEEEECTTCSEEEEEETT--TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-----EEEEE--
T ss_pred CCcEEEeeCCCCEEEEEECC--CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-----EEEEE--
Confidence 45688888999999999986 789999998776 5789999999999988 34778999998 543 23443
Q ss_pred CCceEEeecC-CccEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 103 DTNLFEILKS-KTTVSAIEVSPDGKQFSITSP-DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 103 ~~~l~~~~~~-~~~v~~i~~spdg~~lat~s~-D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
..+ ...+.++.+.|||+.+++.+. ++.|..+|. +|+.++.+.-....
T Consensus 72 -------~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~----------------------- 120 (276)
T 3no2_A 72 -------AAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI----------------------- 120 (276)
T ss_dssp -------ECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC-----------------------
T ss_pred -------cCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC-----------------------
Confidence 332 245788999999999999887 778888885 89988877320000
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccc
Q 011436 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAA 259 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~ 259 (485)
.... .....++++++|++|++.+.++ |..||.. |+++.+++... ....+ .+
T Consensus 121 ------~~~~-~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~---~~---------------- 172 (276)
T 3no2_A 121 ------ERPH-AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSS---AF---------------- 172 (276)
T ss_dssp ------SSGG-GSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEE---EE----------------
T ss_pred ------Cccc-ccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC-Cccce---eE----------------
Confidence 0000 0123567899999999988776 9999998 99998887643 11110 00
Q ss_pred cccccCCCCCCCCeEEEeeecCceEEEEecCCCCC
Q 011436 260 ANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 260 ~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
.++..+++++..+++|+.|++...+.
T Consensus 173 ---------~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 173 ---------LDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp ---------CTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred ---------cCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 16677778888888999998875554
No 196
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.39 E-value=4.8e-12 Score=138.76 Aligned_cols=160 Identities=11% Similarity=0.101 Sum_probs=109.0
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCe-----EEEEEcCCCCEEEEEeCC---------CcEEEEcC
Q 011436 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPV-----KVMRYNPVFDTVISADDK---------GIIEYWSP 86 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V-----~~l~fspd~~~l~s~s~d---------g~i~~Wd~ 86 (485)
++|++.+++++ |++|++||+. ++++...+.+|.... ..++|||||++|+.++.+ +.+.+||+
T Consensus 24 w~~dg~~~~~~--~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~ 99 (740)
T 4a5s_A 24 WISDHEYLYKQ--ENNILVFNAE--YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (740)
T ss_dssp ECSSSEEEEEE--TTEEEEEETT--TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ECCCCcEEEEc--CCcEEEEECC--CCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence 35677888886 8999999997 677777777776432 347899999999998876 45669999
Q ss_pred CCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe-ccchhHHHhhhcCC
Q 011436 87 HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY-DESLEVAQDLQRSD 165 (485)
Q Consensus 87 ~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~-~~~~~~i~~~~~~~ 165 (485)
.++++ ..+..+...+...+|||||++||.+ .|+.|++||+.+|++.+.- +++...
T Consensus 100 ~~~~~---------------~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~-------- 155 (740)
T 4a5s_A 100 NKRQL---------------ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI-------- 155 (740)
T ss_dssp TTTEE---------------CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT--------
T ss_pred CCCcE---------------EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccc--------
Confidence 87542 2255566789999999999999887 5789999999998865432 221100
Q ss_pred CcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-C-eEEEEc
Q 011436 166 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-G-IKIVNL 219 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~-i~v~d~ 219 (485)
++ ... .. ...+.|+ -....++.|||||++|++.+.+ + +++|++
T Consensus 156 --~~--~g~--~~-~v~~ee~----~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 156 --IY--NGI--TD-WVYEEEV----FSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp --EE--ESB--CC-HHHHHHT----SSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred --ee--cCc--cc-ccccchh----cCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 00 000 00 0001111 1123478999999999998754 2 777765
No 197
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.39 E-value=1.5e-10 Score=111.02 Aligned_cols=187 Identities=12% Similarity=0.156 Sum_probs=130.7
Q ss_pred CcceEEEEeCC-CCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 23 VKAGLAISDRN-SSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 23 ~~~~l~vs~s~-d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
+++.++++... ++.|++||. +++.+..+. .+...+.+++++|+++++++...++.|.+||... +
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d~---~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~---------- 152 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYNQ---YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-N---------- 152 (286)
T ss_dssp TTTEEEEEECGGGCEEEEECT---TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C----------
T ss_pred CCCeEEEEcCCCCCEEEEECC---CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-C----------
Confidence 46677777743 789999994 466666665 4556789999999999888888889999998642 1
Q ss_pred cCCCceEEee--cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 101 KSDTNLFEIL--KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 101 ~~~~~l~~~~--~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
.+..+. .+...+.+++++|+|+.+++.+.++.|++||. +++.+..+....
T Consensus 153 ----~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g----------------------- 204 (286)
T 1q7f_A 153 ----VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEG----------------------- 204 (286)
T ss_dssp ----EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTT-----------------------
T ss_pred ----EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCC-----------------------
Confidence 122222 34456899999999998888888999999997 566666653200
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCC--CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeee
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIP 256 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~--~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~ 256 (485)
.......+++|++|+++++.... .|++||. +|+.++.+..+........++
T Consensus 205 -----------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~--------------- 257 (286)
T 1q7f_A 205 -----------ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVA--------------- 257 (286)
T ss_dssp -----------TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEE---------------
T ss_pred -----------ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEE---------------
Confidence 00112479999999988887664 6999995 577777765443111111111
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 257 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+ .+|+.++++. .|++|++|.-.
T Consensus 258 ~-----------~~~g~l~vs~-~~~~v~v~~~~ 279 (286)
T 1q7f_A 258 L-----------MDDGSVVLAS-KDYRLYIYRYV 279 (286)
T ss_dssp E-----------ETTTEEEEEE-TTTEEEEEECS
T ss_pred E-----------CCCCcEEEEC-CCCeEEEEEcc
Confidence 1 1678888884 69999999653
No 198
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.37 E-value=3.6e-12 Score=145.08 Aligned_cols=184 Identities=12% Similarity=0.091 Sum_probs=135.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEec-----------CCCCeEEEEEc-CCCCEEEEEeCCCcEEEEcCCCC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKV-----------HMGPVKVMRYN-PVFDTVISADDKGIIEYWSPHTL 89 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~-----------h~~~V~~l~fs-pd~~~l~s~s~dg~i~~Wd~~t~ 89 (485)
+|++..++.+ .++.|++||+. . ..+..+.+ |...|.+++|| |||+.|++++ ++.|.+|+..++
T Consensus 253 SpDG~~la~~-~~~~i~~~d~~--~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~ 327 (1045)
T 1k32_A 253 NTDGRRILFS-KGGSIYIFNPD--T-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT 327 (1045)
T ss_dssp EESSSCEEEE-ETTEEEEECTT--T-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS
T ss_pred cCCCCEEEEE-eCCEEEEecCC--c-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC
Confidence 3456655555 48899999984 3 33445554 45579999999 9999999888 789999998653
Q ss_pred CCCCceeEEEEcCCCceEEeecCCc-cEEEEEEcCCCCEEEEEeCCCcEE-EEECCCCcEEEEeccchhHHHhhhcCCCc
Q 011436 90 QFPESEVSFRLKSDTNLFEILKSKT-TVSAIEVSPDGKQFSITSPDRRIR-VFWFRTGKLRRVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~-~v~~i~~spdg~~lat~s~D~~I~-iwd~~tg~~~~~~~~~~~~i~~~~~~~~~ 167 (485)
+ ...+..|.. .+.+++|+ ||+.|++++.+..+. +||+.+++..... .
T Consensus 328 ~---------------~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~-------------- 376 (1045)
T 1k32_A 328 Y---------------VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-E-------------- 376 (1045)
T ss_dssp B---------------EEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-C--------------
T ss_pred c---------------eEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-C--------------
Confidence 2 223455666 78999999 999999999988888 9999887653211 1
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccCCccceeeeeeccCC
Q 011436 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGD 246 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~ 246 (485)
....+..++|+|+|++|++++.++ |++||+.+|++...+.+|......+. |
T Consensus 377 ----------------------~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~---~--- 428 (1045)
T 1k32_A 377 ----------------------NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT---I--- 428 (1045)
T ss_dssp ----------------------CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE---E---
T ss_pred ----------------------CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceE---E---
Confidence 011235889999999999999886 99999999998888766653333222 2
Q ss_pred ccCcceeeeeccccccccCCCCCCCCeEEEeeecC----------ceEEEEecCC
Q 011436 247 RSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKR----------HRIYLFSRRE 291 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d----------~~i~~f~~~~ 291 (485)
.||+..|++++.+ .+||+|+...
T Consensus 429 ----------------------SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 429 ----------------------SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp ----------------------CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred ----------------------CCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 1788877777654 4999998654
No 199
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.37 E-value=5.9e-11 Score=116.94 Aligned_cols=195 Identities=14% Similarity=0.114 Sum_probs=133.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEE---------ecCCCCeEEEEEcC-CCCEEEEEe-CCCcEEEEcCCCCC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISK---------KVHMGPVKVMRYNP-VFDTVISAD-DKGIIEYWSPHTLQ 90 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l---------~~h~~~V~~l~fsp-d~~~l~s~s-~dg~i~~Wd~~t~~ 90 (485)
++++.+.++...++.|++||.. +....+.++ .++......|+|+| ++.++++.+ .++.|++||.. ++
T Consensus 99 d~~g~l~v~d~~~~~v~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~ 176 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLDPH-SKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GK 176 (329)
T ss_dssp CTTSCEEEEETTTTEEEEECTT-CSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SC
T ss_pred CCCCCEEEEECCCCEEEEEeCC-CCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CC
Confidence 4677789999889999999985 122256666 34556789999999 788888886 68999999843 22
Q ss_pred CCCceeEEEEcCCCceEEee----------cCCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHH
Q 011436 91 FPESEVSFRLKSDTNLFEIL----------KSKTTVSAIEVSPD-GKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQ 159 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~----------~~~~~v~~i~~spd-g~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~ 159 (485)
+ +..+. ++-..+..++++|+ |..+++...++.|++||..+|+.++++....
T Consensus 177 ~--------------~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~---- 238 (329)
T 3fvz_A 177 F--------------VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHAS---- 238 (329)
T ss_dssp E--------------EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTT----
T ss_pred E--------------EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccc----
Confidence 2 11121 11234899999999 7888888889999999999999988873210
Q ss_pred hhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECC------CCCEEEEecCC-CeEEEEcccCeEEEeecccC
Q 011436 160 DLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE------SSNFLIYATLL-GIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~------~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~ 232 (485)
.......++|+| +|+..++.+.. .|++||..+|+++.+++...
T Consensus 239 ------------------------------~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~ 288 (329)
T 3fvz_A 239 ------------------------------FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR 288 (329)
T ss_dssp ------------------------------TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS
T ss_pred ------------------------------cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC
Confidence 000113566666 44432222222 59999999999999886322
Q ss_pred CccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 233 NNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 233 ~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
..... +.+ +.+ .+|+.++++...+++|++|....
T Consensus 289 ~~~~~-p~~-------------ia~-----------~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 289 KHFDM-PHD-------------IVA-----------SEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SCCSS-EEE-------------EEE-----------CTTSEEEEEESSSCCEEEEEEEE
T ss_pred CccCC-eeE-------------EEE-----------CCCCCEEEEECCCCEEEEEeCCc
Confidence 11110 001 111 27889999999999999998753
No 200
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.33 E-value=4e-10 Score=111.86 Aligned_cols=170 Identities=11% Similarity=0.125 Sum_probs=100.6
Q ss_pred CCcceEEEEeCCC----CeEEEEEcCCCCCc--ceEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEcCCCCCCCCc
Q 011436 22 DVKAGLAISDRNS----SFVHIYDARADSNE--PLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 22 ~~~~~l~vs~s~d----~~I~iwd~~~~~~~--~~~~l~~h~~~V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t~~~~~~ 94 (485)
+|++.++++++.+ +.|++|++...++. .+..+..+......+++ ++++|++++ .++.|.+|++.+......
T Consensus 58 spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~ 135 (361)
T 3scy_A 58 SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLP 135 (361)
T ss_dssp CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCS
T ss_pred CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcc
Confidence 4566666665554 79999998632233 34444556667788888 888777766 688999999865322211
Q ss_pred eeE-EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc-------EEEEeccchhHHHhhhcCC
Q 011436 95 EVS-FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGK-------LRRVYDESLEVAQDLQRSD 165 (485)
Q Consensus 95 ~~~-~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~-------~~~~~~~~~~~i~~~~~~~ 165 (485)
... .... +......+.+...+.+++|+|||+++++++ .++.|++|++.... +...-...
T Consensus 136 ~~~~~~~~-g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~----------- 203 (361)
T 3scy_A 136 ASDVIEFK-GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE----------- 203 (361)
T ss_dssp CSEEEECC-CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE-----------
T ss_pred cceeEEcc-CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc-----------
Confidence 000 0000 000000111233468899999999776655 48899999887533 21110000
Q ss_pred CcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC-CC-eEEEEcccCeE
Q 011436 166 APLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LG-IKIVNLHTNKV 224 (485)
Q Consensus 166 ~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~-i~v~d~~tg~~ 224 (485)
... .........++|+|+|++|++++. ++ |.+|++.+|++
T Consensus 204 --~~~-----------------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 204 --AFK-----------------VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp --EEE-----------------CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred --cee-----------------cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 000 000111247899999998887773 44 99999998865
No 201
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=142.60 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=68.6
Q ss_pred CCcceEEEEeCC---------CCeEEEEEcCCCCCcce--EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCC
Q 011436 22 DVKAGLAISDRN---------SSFVHIYDARADSNEPL--ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQ 90 (485)
Q Consensus 22 ~~~~~l~vs~s~---------d~~I~iwd~~~~~~~~~--~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~ 90 (485)
+|+++.++.++. ++.|++||+. +++.+ ..+ ...+.+++|||||+.|+.++ |+.|++||+.+++
T Consensus 68 SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~--~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~ 141 (719)
T 1z68_A 68 SPDRQFVYLESDYSKLWRYSYTATYYIYDLS--NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP 141 (719)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETT--TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred CCCCCeEEEEecCceeEEeecceEEEEEECC--CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence 678887777655 6899999997 45442 222 25688999999999999886 7899999998754
Q ss_pred CCCceeEEEEcCCCceEEeecCCccE---------EEEEEcCCCCEEEEEeCC
Q 011436 91 FPESEVSFRLKSDTNLFEILKSKTTV---------SAIEVSPDGKQFSITSPD 134 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~v---------~~i~~spdg~~lat~s~D 134 (485)
...- . ..+.....+.++...| .+++|||||++||+++.|
T Consensus 142 ~~~l--~---~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 142 PFQI--T---FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp CEEC--C---CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred cEEE--e---cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 3210 0 0011111122332222 489999999999999865
No 202
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.28 E-value=3.1e-10 Score=111.71 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=138.3
Q ss_pred CCcceEEEEeCCC------------------------CeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEe
Q 011436 22 DVKAGLAISDRNS------------------------SFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISAD 76 (485)
Q Consensus 22 ~~~~~l~vs~s~d------------------------~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s 76 (485)
++++.++++.+.+ ++|.+||.. +++.+..+. ++......|+++|+++++++..
T Consensus 32 d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~ 109 (329)
T 3fvz_A 32 DSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN--NAEILQSSGKNLFYLPHGLSIDTDGNYWVTDV 109 (329)
T ss_dssp CTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT--TCCEEEEECTTTCSSEEEEEECTTSCEEEEET
T ss_pred CCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC--CCeEEeccCCCccCCceEEEECCCCCEEEEEC
Confidence 5577888888777 479999986 567666654 5556889999999999999988
Q ss_pred CCCcEEEEcCCCCCCCCceeEEEEcCCCceEEe---------ecCCccEEEEEEcC-CCCEEEEEe-CCCcEEEEECCCC
Q 011436 77 DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEI---------LKSKTTVSAIEVSP-DGKQFSITS-PDRRIRVFWFRTG 145 (485)
Q Consensus 77 ~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~---------~~~~~~v~~i~~sp-dg~~lat~s-~D~~I~iwd~~tg 145 (485)
.++.|++||...... .+..+ .++...+..++|+| +|..+++.+ .++.|++|| .+|
T Consensus 110 ~~~~v~~~~~~g~~~-------------~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g 175 (329)
T 3fvz_A 110 ALHQVFKLDPHSKEG-------------PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG 175 (329)
T ss_dssp TTTEEEEECTTCSSC-------------CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred CCCEEEEEeCCCCeE-------------EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence 899999999754210 12222 23344689999999 899999887 699999999 678
Q ss_pred cEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCC-CCEEEEecCCC-eEEEEcccCe
Q 011436 146 KLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES-SNFLIYATLLG-IKIVNLHTNK 223 (485)
Q Consensus 146 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~-g~~l~~~s~~~-i~v~d~~tg~ 223 (485)
+.+..+...... ..+. .........|++||+ |+++++.+..+ |++||..+|+
T Consensus 176 ~~~~~~~~~g~~-----~~~~---------------------~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 176 KFVTQWGEESSG-----SSPR---------------------PGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE 229 (329)
T ss_dssp CEEEEECEECCS-----SSCC---------------------TTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEeccCCCC-----CCCC---------------------CcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence 887776321000 0000 000011258999999 66666665554 9999999999
Q ss_pred EEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 224 VSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 224 ~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
+++++.......+...++ |. | +.... .++.++++.+.+.++++|+....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~-~~--p---g~~~~--------------~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 230 FVREIKHASFGRNVFAIS-YI--P---GFLFA--------------VNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp EEEEECCTTTTTCEEEEE-EE--T---TEEEE--------------EECCCCTTCSCCCCEEEEETTTCC
T ss_pred EEEEEeccccCCCcceee-ec--C---CEEEE--------------eCCCEEeccCCCcEEEEEEcCCCe
Confidence 999885433111111111 11 0 11111 244456667778899999865444
No 203
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.27 E-value=3.8e-11 Score=129.37 Aligned_cols=163 Identities=11% Similarity=0.092 Sum_probs=104.8
Q ss_pred CcceE--EEEeCCCCeEEEEEcCCCCC-cceEEEec-----CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEE
Q 011436 23 VKAGL--AISDRNSSFVHIYDARADSN-EPLISKKV-----HMGPVKVMRYNPVFDTVISADDK----------GIIEYW 84 (485)
Q Consensus 23 ~~~~l--~vs~s~d~~I~iwd~~~~~~-~~~~~l~~-----h~~~V~~l~fspd~~~l~s~s~d----------g~i~~W 84 (485)
|++.. +.+...+..|.+|++.. .+ .....+.. |...+.+++|||||+.|++++.| ..|.+|
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~-~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDA-PGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTS-TTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCC-CCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 45544 44444455566666520 02 34556665 77889999999999999988876 578899
Q ss_pred cCCCCCCCCceeEEEEcCCCceEEee-cCCccEEEEEEcCCCCEEEEEeCCC--------cEEEEECC-CC---cEEEEe
Q 011436 85 SPHTLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSPDR--------RIRVFWFR-TG---KLRRVY 151 (485)
Q Consensus 85 d~~t~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~s~D~--------~I~iwd~~-tg---~~~~~~ 151 (485)
|+.+..... ......+. .+...+.+++|||||++||.++.++ .|++||+. +| +..+..
T Consensus 167 ~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 167 PLDGSAAAD---------RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp ETTSTTTTC---------GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred ECCCCcccc---------CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 887510000 01222344 5556788899999999999888553 79999998 67 333222
Q ss_pred ccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC---eEEEEcccCeEEEee
Q 011436 152 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG---IKIVNLHTNKVSRIL 228 (485)
Q Consensus 152 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~---i~v~d~~tg~~v~~~ 228 (485)
.+ ......+++|+|||++++++..++ |.+||+.++++.+.+
T Consensus 238 ~~------------------------------------~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~ 281 (662)
T 3azo_A 238 GG------------------------------------PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC 281 (662)
T ss_dssp EE------------------------------------TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS
T ss_pred CC------------------------------------CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc
Confidence 11 011234789999999666666554 566666688876665
Q ss_pred ccc
Q 011436 229 GKV 231 (485)
Q Consensus 229 ~~~ 231 (485)
.++
T Consensus 282 ~~~ 284 (662)
T 3azo_A 282 RRE 284 (662)
T ss_dssp CCS
T ss_pred ccc
Confidence 543
No 204
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.27 E-value=1.9e-11 Score=134.04 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=75.4
Q ss_pred CCcceEEEEeCCC---------CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 011436 22 DVKAGLAISDRNS---------SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFP 92 (485)
Q Consensus 22 ~~~~~l~vs~s~d---------~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~ 92 (485)
+|+++.++.++.+ +.+.+||+. ++++ ..+..|...+..++|||||+.||.++ |+.|.+||..+++..
T Consensus 70 Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~--~~~~-~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 70 SPDGQFILLEYNYVKQWRHSYTASYDIYDLN--KRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY 145 (740)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETT--TTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred CCCCCEEEEEECCeeeEEEccceEEEEEECC--CCcE-EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE
Confidence 6788877777665 556799997 5543 34677888999999999999999885 689999998875432
Q ss_pred CceeEEEEcCCCceEEeecCCc---------cEEEEEEcCCCCEEEEEeCCCc-EEEEEC
Q 011436 93 ESEVSFRLKSDTNLFEILKSKT---------TVSAIEVSPDGKQFSITSPDRR-IRVFWF 142 (485)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~~~---------~v~~i~~spdg~~lat~s~D~~-I~iwd~ 142 (485)
+- .+ .+.....+.++.. ...+++|||||++||.++.|.+ +++|++
T Consensus 146 ~l--t~---~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 146 RI--TW---TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp EC--CS---CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred EE--cC---CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 10 00 0111111222221 1235899999999999886544 666654
No 205
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.27 E-value=2.1e-09 Score=103.70 Aligned_cols=169 Identities=11% Similarity=0.082 Sum_probs=117.3
Q ss_pred CCcce-EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc------
Q 011436 22 DVKAG-LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES------ 94 (485)
Q Consensus 22 ~~~~~-l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~------ 94 (485)
++++. +++++..++.|++||.. ++ ...+..+...+.+++|+|+++++++.+.++.|.+||..++++..-
T Consensus 36 d~~g~~l~~~~~~~~~i~~~~~~--~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~ 111 (296)
T 3e5z_A 36 VPARSAVIFSDVRQNRTWAWSDD--GQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG 111 (296)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETT--SC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT
T ss_pred eCCCCEEEEEeCCCCEEEEEECC--CC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC
Confidence 34555 78888889999999986 33 667777888899999999999988887788999999866553210
Q ss_pred -------eeE-------E---------------------------EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC
Q 011436 95 -------EVS-------F---------------------------RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 133 (485)
Q Consensus 95 -------~~~-------~---------------------------~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~ 133 (485)
.+. | .+.....+..+..+...+..++|+|||+.+++.+.
T Consensus 112 ~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~ 191 (296)
T 3e5z_A 112 KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTG 191 (296)
T ss_dssp EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETT
T ss_pred CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCC
Confidence 011 1 11111122223334455788999999998877777
Q ss_pred CCcEEEEECC-CCcE---EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEe
Q 011436 134 DRRIRVFWFR-TGKL---RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 209 (485)
Q Consensus 134 D~~I~iwd~~-tg~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~ 209 (485)
++.|++||+. +|++ .+.+ .. .......+++|++|++.++.
T Consensus 192 ~~~i~~~~~~~~g~~~~~~~~~-~~-----------------------------------~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 192 DNATHRYCLNARGETEYQGVHF-TV-----------------------------------EPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp TTEEEEEEECSSSCEEEEEEEE-CC-----------------------------------SSSCCCSEEEBTTSCEEEEE
T ss_pred CCeEEEEEECCCCcCcCCCeEe-eC-----------------------------------CCCCCCeEEECCCCCEEEEc
Confidence 8899999986 5664 2222 10 00112478999999977766
Q ss_pred cCCCeEEEEcccCeEEEeecccC
Q 011436 210 TLLGIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 210 s~~~i~v~d~~tg~~v~~~~~~~ 232 (485)
..+|.+||.. |+++..+..+.
T Consensus 236 -~~~v~~~~~~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 236 -GDGVHVLTPD-GDELGRVLTPQ 256 (296)
T ss_dssp -TTEEEEECTT-SCEEEEEECSS
T ss_pred -CCeEEEECCC-CCEEEEEECCC
Confidence 6679999986 88887776655
No 206
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.25 E-value=1.4e-09 Score=104.11 Aligned_cols=188 Identities=12% Similarity=0.183 Sum_probs=128.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe------cCCCCeEEEEE-cCCCCEEEEEeC-CCcEEEEcCCCCCCCC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKK------VHMGPVKVMRY-NPVFDTVISADD-KGIIEYWSPHTLQFPE 93 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~------~h~~~V~~l~f-spd~~~l~s~s~-dg~i~~Wd~~t~~~~~ 93 (485)
++++.++++.+.++.|++||.. +..+..+. +|...+.++++ .+++.++++... ++.|.+||. +++
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~--- 110 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ--- 110 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC---
T ss_pred CCCCCEEEEECCCCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCc---
Confidence 4567788888889999999974 45566664 35567899999 577777777643 889999994 322
Q ss_pred ceeEEEEcCCCceEEee-cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccc
Q 011436 94 SEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLE 172 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~ 172 (485)
.+..+. .+...+.+++++|+|+.+++.+.++.|++||. +++.++.+...
T Consensus 111 -----------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~------------------ 160 (286)
T 1q7f_A 111 -----------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCS------------------ 160 (286)
T ss_dssp -----------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECT------------------
T ss_pred -----------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCC------------------
Confidence 222232 23356899999999998888888899999995 56766655210
Q ss_pred cccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcc
Q 011436 173 AIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKK 251 (485)
Q Consensus 173 ~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~ 251 (485)
........++++++|+++++.+.. .|++||. +++.+..+..+. .... +.++
T Consensus 161 ----------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g-~~~~-p~~i--------- 212 (286)
T 1q7f_A 161 ----------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEG-ITNY-PIGV--------- 212 (286)
T ss_dssp ----------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTT-TSCS-EEEE---------
T ss_pred ----------------CccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCC-ccCC-CcEE---------
Confidence 000112589999999987776654 5999997 566666665432 0000 0011
Q ss_pred eeeeeccccccccCCCCCCCCeEEEeeecCc-eEEEEec
Q 011436 252 VRKIPAAAANANESKEPFSDPTLLCCAFKRH-RIYLFSR 289 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~-~i~~f~~ 289 (485)
.+ .+|+.++++...++ +|++|+.
T Consensus 213 ----~~-----------d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 213 ----GI-----------NSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp ----EE-----------CTTCCEEEEECSSSCEEEEECT
T ss_pred ----EE-----------CCCCCEEEEeCCCCEEEEEECC
Confidence 11 26778889988886 9999974
No 207
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.23 E-value=2.1e-10 Score=123.51 Aligned_cols=185 Identities=8% Similarity=0.009 Sum_probs=123.5
Q ss_pred CcceEEEEe--CCCCeEEEEEcCCCCCcceEEEecCCCCeE---------EEEEc--CCCCE-EEEEeC-CCcEEEEcCC
Q 011436 23 VKAGLAISD--RNSSFVHIYDARADSNEPLISKKVHMGPVK---------VMRYN--PVFDT-VISADD-KGIIEYWSPH 87 (485)
Q Consensus 23 ~~~~l~vs~--s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~---------~l~fs--pd~~~-l~s~s~-dg~i~~Wd~~ 87 (485)
++..+.++. +.++...||... .+...+.+..|...|. +..|+ ||++. |+.++. +..|.+|++.
T Consensus 33 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~ 110 (662)
T 3azo_A 33 GDEVWWVAPRPAEAGRATLVRRR--ADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPD 110 (662)
T ss_dssp TTEEEEEEEETTTTTEEEEEEEC--TTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTT
T ss_pred CCeEEEEecCcccCCcEEEEEEC--CCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCC
Confidence 456677776 668899999964 3444667777776766 66666 99998 765553 5566666664
Q ss_pred --C-CCCCCceeEEEEcCCCceEEeec-----CCccEEEEEEcCCCCEEEEEeCC----------CcEEEEECCC-----
Q 011436 88 --T-LQFPESEVSFRLKSDTNLFEILK-----SKTTVSAIEVSPDGKQFSITSPD----------RRIRVFWFRT----- 144 (485)
Q Consensus 88 --t-~~~~~~~~~~~~~~~~~l~~~~~-----~~~~v~~i~~spdg~~lat~s~D----------~~I~iwd~~t----- 144 (485)
+ ++ ...+.. |...+.+++|||||++|++++.| ..|++||+.+
T Consensus 111 ~~g~~~---------------~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 111 APGGAV---------------PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp STTCCC---------------CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred CCCCCC---------------CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 1 21 222333 56678899999999999999877 5899999987
Q ss_pred -CcEEEEec-cchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC---------C
Q 011436 145 -GKLRRVYD-ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL---------G 213 (485)
Q Consensus 145 -g~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~---------~ 213 (485)
++.. .+. . ....+.+++|||||++|++++.+ .
T Consensus 176 ~~~~~-~l~~~------------------------------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~ 218 (662)
T 3azo_A 176 RSAVR-ELSDD------------------------------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE 218 (662)
T ss_dssp GGGSE-ESSCS------------------------------------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred CCcee-EEEec------------------------------------CCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence 5542 221 1 00112467899999999988743 3
Q ss_pred eEEEEcc-cC---eEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCc--eEEEE
Q 011436 214 IKIVNLH-TN---KVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRH--RIYLF 287 (485)
Q Consensus 214 i~v~d~~-tg---~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~--~i~~f 287 (485)
|.+||+. +| ++.+...++....+.+ .|. ||+.+++++..|+ +||+|
T Consensus 219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~---~~s-------------------------pdg~l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 219 LKTARVTEDGRFADTRTLLGGPEEAIAQA---EWA-------------------------PDGSLIVATDRTGWWNLHRV 270 (662)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTBCEEEE---EEC-------------------------TTSCEEEEECTTSSCEEEEE
T ss_pred EEEEEECCCCcccccEEeCCCCCceEcce---EEC-------------------------CCCeEEEEECCCCCeEEEEE
Confidence 8999998 67 5545544433222211 121 7777888888887 78887
Q ss_pred ec
Q 011436 288 SR 289 (485)
Q Consensus 288 ~~ 289 (485)
+.
T Consensus 271 ~~ 272 (662)
T 3azo_A 271 DP 272 (662)
T ss_dssp CT
T ss_pred EC
Confidence 64
No 208
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.22 E-value=6.2e-10 Score=111.21 Aligned_cols=154 Identities=10% Similarity=-0.030 Sum_probs=104.9
Q ss_pred CCCCcceEEEEeCC-CCe--EEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCcee
Q 011436 20 QGDVKAGLAISDRN-SSF--VHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 20 ~~~~~~~l~vs~s~-d~~--I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~ 96 (485)
..+|++..++..+. ++. |.+||+. +++......+|...+.+++|+||++.|+.++.++.|.+||+.+++.
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~--~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~----- 114 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLN--TQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE----- 114 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETT--TCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE-----
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCC--CCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc-----
Confidence 45788876666555 664 7778886 5665555556666666788999999999999999999999987432
Q ss_pred EEEEcCCCceEEeecCCccEEEE--EEcCCCCEEEEE----------------------eCCCcEEEEECCCCcEEEEec
Q 011436 97 SFRLKSDTNLFEILKSKTTVSAI--EVSPDGKQFSIT----------------------SPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~v~~i--~~spdg~~lat~----------------------s~D~~I~iwd~~tg~~~~~~~ 152 (485)
...+..+...+... .++|||++++.. ..+..|++||+.+|+......
T Consensus 115 ---------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 185 (388)
T 3pe7_A 115 ---------NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ 185 (388)
T ss_dssp ---------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE
T ss_pred ---------eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec
Confidence 22233333444333 459999998753 245789999999988654332
Q ss_pred cchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECC-CCCEEEEecCC-------CeEEEEcccCeE
Q 011436 153 ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE-SSNFLIYATLL-------GIKIVNLHTNKV 224 (485)
Q Consensus 153 ~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~-~g~~l~~~s~~-------~i~v~d~~tg~~ 224 (485)
. ...+..++|+| +|+.|++.+.. .|.++|..+++.
T Consensus 186 ~-------------------------------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 186 E-------------------------------------NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp E-------------------------------------SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred C-------------------------------------CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 1 01124788999 99999987753 366777766554
Q ss_pred EE
Q 011436 225 SR 226 (485)
Q Consensus 225 v~ 226 (485)
..
T Consensus 229 ~~ 230 (388)
T 3pe7_A 229 RK 230 (388)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 209
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.18 E-value=3.5e-09 Score=112.17 Aligned_cols=191 Identities=13% Similarity=0.105 Sum_probs=126.3
Q ss_pred CCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCC--CCCCCCceeEE
Q 011436 21 GDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPH--TLQFPESEVSF 98 (485)
Q Consensus 21 ~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~--t~~~~~~~~~~ 98 (485)
.++..+++++...+++|.++|.. +++.+.++.... .+..+.|+||++++..++.|+.|.+||+. +.+
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~--t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-------- 231 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGS--TYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-------- 231 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETT--TCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--------
T ss_pred cCCCceEEEEeCCCCeEEEEECC--CCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--------
Confidence 34577899999999999999997 778888887433 56799999999999999999999999985 432
Q ss_pred EEcCCCceEEeecCCccEEEEEEc----CCCCEEEEEeC-CCcEEEEECCCCcEEEEeccchhH-----------HHhhh
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVS----PDGKQFSITSP-DRRIRVFWFRTGKLRRVYDESLEV-----------AQDLQ 162 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~s----pdg~~lat~s~-D~~I~iwd~~tg~~~~~~~~~~~~-----------i~~~~ 162 (485)
.+..+.... ....++|| |||+++++++. +++|.|+|..+.+.++++.-.... +..+.
T Consensus 232 ------~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 232 ------TVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp ------EEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred ------EeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 233344332 36789999 79999988875 689999999999999887421100 01111
Q ss_pred cCCC-cccccccccccchhhhhH-h-----h-hccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccCeEEEeec
Q 011436 163 RSDA-PLYRLEAIDFGRRMAVEK-E-----I-EKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTNKVSRILG 229 (485)
Q Consensus 163 ~~~~-~~~~~~~~~~g~~~~~~~-~-----i-~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg~~v~~~~ 229 (485)
.++. ..+-+...+.|+...+.. . + ..........+.|||+|+|+++++. +.|.+||+.+++++..+.
T Consensus 305 ~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 305 ASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp ECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 1111 000000011111000000 0 0 0011222346789999999988765 459999999999887763
No 210
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.17 E-value=9.6e-10 Score=109.72 Aligned_cols=160 Identities=14% Similarity=0.021 Sum_probs=101.5
Q ss_pred CCcce-EEEEeCCCCeEEEEEcCCCCCcc--eEEEe--cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEcCC--CCCCCC
Q 011436 22 DVKAG-LAISDRNSSFVHIYDARADSNEP--LISKK--VHMGPVKVMRYNPVFDTVISADD-KGIIEYWSPH--TLQFPE 93 (485)
Q Consensus 22 ~~~~~-l~vs~s~d~~I~iwd~~~~~~~~--~~~l~--~h~~~V~~l~fspd~~~l~s~s~-dg~i~~Wd~~--t~~~~~ 93 (485)
+|+++ ++++...++.|++||+.. +++. +..+. .|...+.+++|+|||++++.++. ++.|.+|+.. ++++..
T Consensus 153 spdG~~l~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~ 231 (365)
T 1jof_A 153 DPTETYLYSADLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEEcCCCCEEEEEEECC-CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence 56665 444555578999999961 2332 33444 24667999999999998887764 7899998543 433210
Q ss_pred ceeEEEEcCCCceEEe----ecCCc------cEEEEE-EcCCCCEEEEEeCCC------cEEEEECC-CCcEEEEeccch
Q 011436 94 SEVSFRLKSDTNLFEI----LKSKT------TVSAIE-VSPDGKQFSITSPDR------RIRVFWFR-TGKLRRVYDESL 155 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~----~~~~~------~v~~i~-~spdg~~lat~s~D~------~I~iwd~~-tg~~~~~~~~~~ 155 (485)
. . ..+..+ .+|.. .+.+++ |||||++|++++.+. .|++|++. +|++.+....
T Consensus 232 ~---~-----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~-- 301 (365)
T 1jof_A 232 T---H-----HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL-- 301 (365)
T ss_dssp E---E-----EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE--
T ss_pred c---c-----ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee--
Confidence 0 0 001111 12222 588999 999999988776432 89999996 6775432100
Q ss_pred hHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECC---CCCEEEEecCC--CeEEEEcccCe
Q 011436 156 EVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE---SSNFLIYATLL--GIKIVNLHTNK 223 (485)
Q Consensus 156 ~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~---~g~~l~~~s~~--~i~v~d~~tg~ 223 (485)
. .........++|+| +|++|++++.+ .|++|++....
T Consensus 302 ---------------~----------------~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 302 ---------------S----------------PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp ---------------E----------------ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred ---------------e----------------ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 0 00001124678999 89999998864 49999987663
No 211
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.15 E-value=2.3e-09 Score=107.13 Aligned_cols=68 Identities=9% Similarity=-0.016 Sum_probs=50.1
Q ss_pred CCcceEEEEeC----------CCCeEEEEEcCCCCCcceEEEecC------CCCeEEEEEcCCCCEEEEEeC--CCcEEE
Q 011436 22 DVKAGLAISDR----------NSSFVHIYDARADSNEPLISKKVH------MGPVKVMRYNPVFDTVISADD--KGIIEY 83 (485)
Q Consensus 22 ~~~~~l~vs~s----------~d~~I~iwd~~~~~~~~~~~l~~h------~~~V~~l~fspd~~~l~s~s~--dg~i~~ 83 (485)
+|+++.+..++ .+++|.+||+. +.+.+.++..+ ......++|+|||++|+.++. ++.|.+
T Consensus 58 spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~--t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v 135 (361)
T 2oiz_A 58 SNDGKKIYTMTTYHERITRGKRSDVVEVWDAD--KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGI 135 (361)
T ss_dssp CTTSSEEEEEEEEETTSSSSCEEEEEEEEETT--TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEE
T ss_pred CCCCCEEEEEEecccccccCCCCCEEEEEECc--CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEE
Confidence 45665555443 36789999987 77788877632 345678999999999888763 689999
Q ss_pred EcCCCCCC
Q 011436 84 WSPHTLQF 91 (485)
Q Consensus 84 Wd~~t~~~ 91 (485)
||+++++.
T Consensus 136 ~d~~~~~~ 143 (361)
T 2oiz_A 136 VDVAKGDY 143 (361)
T ss_dssp EETTTTEE
T ss_pred EECCCCcE
Confidence 99887654
No 212
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.15 E-value=2.1e-09 Score=101.67 Aligned_cols=193 Identities=9% Similarity=0.013 Sum_probs=126.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++++.+.++.. ++.|.+||.. . .....+. .....+.+++++|+++++++...++.|.+|+..+....
T Consensus 75 ~~~g~l~v~~~-~~~i~~~d~~--~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-------- 142 (270)
T 1rwi_B 75 DGAGTVYVTDF-NNRVVTLAAG--S-NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-------- 142 (270)
T ss_dssp CTTCCEEEEET-TTEEEEECTT--C-SCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE--------
T ss_pred CCCCCEEEEcC-CCEEEEEeCC--C-ceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE--------
Confidence 34566778776 8899999985 2 2333333 33367899999999998888888889999976542211
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
.........+.+++++|+|+.+++...++.|.+||..++........
T Consensus 143 ------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--------------------------- 189 (270)
T 1rwi_B 143 ------VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT--------------------------- 189 (270)
T ss_dssp ------ECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS---------------------------
T ss_pred ------eeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc---------------------------
Confidence 00112223578899999999888877788999999887664321100
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccc
Q 011436 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAA 259 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~ 259 (485)
.......++++++|++.++.... .|.+||..+.........+-.... .+.+
T Consensus 190 ---------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~-----------------~i~~-- 241 (270)
T 1rwi_B 190 ---------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPL-----------------AVAV-- 241 (270)
T ss_dssp ---------SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEE-----------------EEEE--
T ss_pred ---------CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCce-----------------eEEE--
Confidence 00112578999999877766554 599999865443221111100001 1111
Q ss_pred cccccCCCCCCCCeEEEeeecCceEEEEecCCCCCCC
Q 011436 260 ANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEEPE 296 (485)
Q Consensus 260 ~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~~~ 296 (485)
.+|+.++++...+++|++|...+++.+|
T Consensus 242 ---------~~~g~l~v~~~~~~~v~~~~~~~~~~~~ 269 (270)
T 1rwi_B 242 ---------DSDRTVYVADRGNDRVVKLTSLEHHHHH 269 (270)
T ss_dssp ---------CTTCCEEEEEGGGTEEEEECCCGGGSCC
T ss_pred ---------CCCCCEEEEECCCCEEEEEcCCCccccC
Confidence 1677899999999999999887766553
No 213
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.14 E-value=8.8e-10 Score=110.19 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=78.8
Q ss_pred CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 33 NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD----------DKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s----------~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.|++|.+||.. +++.+.++..+..+ .++|+||++++..++ .++.|.+||+.+++....
T Consensus 29 ~d~~v~v~D~~--t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~-------- 96 (361)
T 2oiz_A 29 TESRVHVYDYT--NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE-------- 96 (361)
T ss_dssp GGCEEEEEETT--TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE--------
T ss_pred ccCeEEEEECC--CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE--------
Confidence 37899999986 77888888877766 899999999888876 367899999987543222
Q ss_pred CCceEEeec------CCccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEE
Q 011436 103 DTNLFEILK------SKTTVSAIEVSPDGKQFSITSP--DRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 103 ~~~l~~~~~------~~~~v~~i~~spdg~~lat~s~--D~~I~iwd~~tg~~~~~ 150 (485)
+.. +...+..++|||||++|+++.. +++|.+||+.+++.+.+
T Consensus 97 ------i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 97 ------ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp ------EEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred ------EEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 221 1234567999999999988874 68999999999999887
No 214
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.10 E-value=2.8e-08 Score=97.11 Aligned_cols=196 Identities=10% Similarity=0.053 Sum_probs=123.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEcCCCCCCCCceeE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d----g~i~~Wd~~t~~~~~~~~~ 97 (485)
++++.+++++..++.|.+||.. +++.......+...+.+++|+|+++++++...+ +.|.+||.++.++...
T Consensus 53 ~~~g~l~~~~~~~~~i~~~d~~--~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~--- 127 (333)
T 2dg1_A 53 DRQGQLFLLDVFEGNIFKINPE--TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI--- 127 (333)
T ss_dssp CTTSCEEEEETTTCEEEEECTT--TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE---
T ss_pred CCCCCEEEEECCCCEEEEEeCC--CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE---
Confidence 4677888888889999999986 455444343677889999999999988887776 6899999876432110
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccc
Q 011436 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP------DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~------D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
..-..+...+.+++++|+|+.+++... .+.|..||..+++.......
T Consensus 128 ---------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------ 180 (333)
T 2dg1_A 128 ---------IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN------------------ 180 (333)
T ss_dssp ---------ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE------------------
T ss_pred ---------EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC------------------
Confidence 000123356899999999998887664 35566667666655322110
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEec-C-CCeEEEEccc-CeEEEeecccCCccceeeeeeccCCcc
Q 011436 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT-L-LGIKIVNLHT-NKVSRILGKVENNDRFLRIALYQGDRS 248 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s-~-~~i~v~d~~t-g~~v~~~~~~~~~~r~~~~s~~~~~~~ 248 (485)
......++|+|+|++|..+. . ..|.+||..+ ++.+..+... .+ . -+.+.
T Consensus 181 -------------------~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~----~~--~-~~~~~-- 232 (333)
T 2dg1_A 181 -------------------ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT----IP--Y-YFTGH-- 232 (333)
T ss_dssp -------------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE----EE--E-ECCSS--
T ss_pred -------------------CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce----EE--E-ecCCC--
Confidence 00124789999999765554 3 4599999864 4433322110 00 0 01110
Q ss_pred CcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 249 SKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.....+.. .+|+.++++...+++|++|+.
T Consensus 233 -~~~~~i~~-----------d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 233 -EGPDSCCI-----------DSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp -SEEEEEEE-----------BTTCCEEEEEETTTEEEEECT
T ss_pred -CCCCceEE-----------CCCCCEEEEEcCCCEEEEECC
Confidence 00011111 267788888888999999976
No 215
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.05 E-value=7.5e-09 Score=101.27 Aligned_cols=182 Identities=15% Similarity=0.130 Sum_probs=120.6
Q ss_pred EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCce
Q 011436 27 LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNL 106 (485)
Q Consensus 27 l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l 106 (485)
.+++.+.++.++.|. ......+..+...+.+++|+|++++++++..++.|.+||.+++++.
T Consensus 19 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-------------- 79 (333)
T 2dg1_A 19 SAVPIISESELQTIT-----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-------------- 79 (333)
T ss_dssp CSSCCCCGGGSCEEE-----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--------------
T ss_pred ceeEEeecccCcccc-----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE--------------
Confidence 334445678889993 2456677778888899999999998888888999999998764321
Q ss_pred EEeecCCccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011436 107 FEILKSKTTVSAIEVSPDGKQFSITSPD----RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 107 ~~~~~~~~~v~~i~~spdg~~lat~s~D----~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
.....+...+.+++|+|||+++++...+ +.|.+||..+++....+...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---------------------------- 131 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL---------------------------- 131 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS----------------------------
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC----------------------------
Confidence 1122345679999999999988887766 68999999888764333210
Q ss_pred hHhhhccCCCCCceEEECCCCCEEEEecC-------CCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeee
Q 011436 183 EKEIEKTETAPPSNAIFDESSNFLIYATL-------LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKI 255 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-------~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~ 255 (485)
........+++||+|+++++... .+|..+|..++++........ ....+ .|
T Consensus 132 ------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~i---~~------------ 189 (333)
T 2dg1_A 132 ------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS-VANGI---AL------------ 189 (333)
T ss_dssp ------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES-SEEEE---EE------------
T ss_pred ------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC-cccce---EE------------
Confidence 00112358899999998887653 225555555555433221111 01100 01
Q ss_pred eccccccccCCCCCCCC-eEEEeeecCceEEEEecC
Q 011436 256 PAAAANANESKEPFSDP-TLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~d~-~l~~s~~~d~~i~~f~~~ 290 (485)
.+|+ .++++...+++|++|+..
T Consensus 190 -------------~~dg~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 190 -------------STDEKVLWVTETTANRLHRIALE 212 (333)
T ss_dssp -------------CTTSSEEEEEEGGGTEEEEEEEC
T ss_pred -------------CCCCCEEEEEeCCCCeEEEEEec
Confidence 1665 477777888999999875
No 216
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.04 E-value=1.1e-08 Score=96.71 Aligned_cols=186 Identities=9% Similarity=-0.024 Sum_probs=118.7
Q ss_pred CCcceEEE-EeCCCCeEEEEEcCCCCCcceEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAI-SDRNSSFVHIYDARADSNEPLISK-KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~v-s~s~d~~I~iwd~~~~~~~~~~~l-~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++++.+.+ +...++.|.+||.. +.. ...+ ..+...+.+++++++++++++.. ++.|.+||..+...
T Consensus 32 ~~~g~l~v~~~~~~~~i~~~~~~--~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-------- 99 (270)
T 1rwi_B 32 DSAGNVYVTSEGMYGRVVKLATG--STG-TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-------- 99 (270)
T ss_dssp CTTCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--------
T ss_pred CCCCCEEEEccCCCCcEEEecCC--Ccc-cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--------
Confidence 34566777 66778999999975 322 2222 23445678999999999777766 88999999765321
Q ss_pred EcCCCceEEee-cCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 100 LKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 100 ~~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
..+. .....+.+++++|+|+.+++...++.|.+||..+........
T Consensus 100 -------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-------------------------- 146 (270)
T 1rwi_B 100 -------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-------------------------- 146 (270)
T ss_dssp -------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC--------------------------
T ss_pred -------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc--------------------------
Confidence 1111 222468999999999988887788899999765544321100
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeec
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPA 257 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~ 257 (485)
........++++++|+++++.... .|.+||..++........+..... + +.+
T Consensus 147 ----------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~----~-------------i~~ 199 (270)
T 1rwi_B 147 ----------TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW----G-------------IAV 199 (270)
T ss_dssp ----------CSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE----E-------------EEE
T ss_pred ----------ccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce----E-------------EEE
Confidence 001123589999999977666544 599999877654432211100011 1 111
Q ss_pred cccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 258 AAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 258 ~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.+++.++++...+++|++|+..
T Consensus 200 -----------d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 200 -----------DEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp -----------CTTCCEEEEETTTSCEEEECTT
T ss_pred -----------CCCCCEEEEECCCCcEEEEcCC
Confidence 2667889999999999999764
No 217
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.03 E-value=6.2e-09 Score=113.42 Aligned_cols=113 Identities=11% Similarity=-0.023 Sum_probs=77.5
Q ss_pred eCCCCcceEEEEeCC-CC----eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-------------
Q 011436 19 KQGDVKAGLAISDRN-SS----FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGI------------- 80 (485)
Q Consensus 19 ~~~~~~~~l~vs~s~-d~----~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~------------- 80 (485)
...+|+++.++.+++ +| .|++||+. +++.+.....+ ..+.+++|+|||+.|+.++.++.
T Consensus 130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~--tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 206 (710)
T 2xdw_A 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVD--GAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (710)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETT--TTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECC--CCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence 345677776664433 22 89999997 56655422222 23678999999999999888766
Q ss_pred ---EEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-----CCcEEEEECCC
Q 011436 81 ---IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-----DRRIRVFWFRT 144 (485)
Q Consensus 81 ---i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-----D~~I~iwd~~t 144 (485)
|.+|++.+.+... ..++....+...+.+++|||||++|+..+. +..|++||+.+
T Consensus 207 ~~~v~~~~l~t~~~~~----------~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSED----------ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CCEEEEEETTSCGGGC----------EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred CCEEEEEECCCCcccc----------eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 8899887643110 112222234556789999999999988775 67899999876
No 218
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.02 E-value=3.9e-09 Score=105.32 Aligned_cols=92 Identities=10% Similarity=-0.065 Sum_probs=70.1
Q ss_pred CCcceEEEecCCCCeEE-----EEEcCCCCEEEEEeC-CCc--EEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEE
Q 011436 46 SNEPLISKKVHMGPVKV-----MRYNPVFDTVISADD-KGI--IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVS 117 (485)
Q Consensus 46 ~~~~~~~l~~h~~~V~~-----l~fspd~~~l~s~s~-dg~--i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~ 117 (485)
++..+..+..|...+.. .+|||||+.|+.++. ++. |.+||+.+++. ......+...+.
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~--------------~~lt~~~~~~~~ 84 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA--------------TQLTEGRGDNTF 84 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE--------------EECCCSSCBCSS
T ss_pred CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce--------------EEeeeCCCCCcc
Confidence 67778888888776666 889999999988887 674 66778876432 122333444444
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 011436 118 AIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 118 ~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
+++|||||++|+.++.++.|++||+.+++....+
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY 118 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee
Confidence 6789999999999999999999999999876554
No 219
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.01 E-value=6.3e-09 Score=113.09 Aligned_cols=115 Identities=15% Similarity=-0.005 Sum_probs=80.4
Q ss_pred eCCCCcceEEE-----EeCCCCeEEEEEcCCCCCcceEEEecCCCCe--EEEEEcCCCCEEEEEeCCCc-----------
Q 011436 19 KQGDVKAGLAI-----SDRNSSFVHIYDARADSNEPLISKKVHMGPV--KVMRYNPVFDTVISADDKGI----------- 80 (485)
Q Consensus 19 ~~~~~~~~l~v-----s~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V--~~l~fspd~~~l~s~s~dg~----------- 80 (485)
...||++..++ +|+++.+|++||+. +++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~--tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~ 201 (695)
T 2bkl_A 126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVD--SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGY 201 (695)
T ss_dssp EEECTTSSEEEEEEEETTCSCCEEEEEETT--TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred EEECCCCCEEEEEECCCCCceEEEEEEECC--CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence 34578888777 55566899999997 554431 1122223 67899999999999998876
Q ss_pred --EEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCcE
Q 011436 81 --IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR----RIRVFWFRTGKL 147 (485)
Q Consensus 81 --i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~----~I~iwd~~tg~~ 147 (485)
|.+|++.+.+.. ...++....+...+.+++|||||++|+..+.++ .|++||..+++.
T Consensus 202 ~~v~~~~l~t~~~~----------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~ 264 (695)
T 2bkl_A 202 TTIRYHTLGTEPSK----------DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF 264 (695)
T ss_dssp CEEEEEETTSCGGG----------CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC
T ss_pred CEEEEEECCCCchh----------ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce
Confidence 999998764311 112233344556789999999999999888766 677777666654
No 220
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.00 E-value=5.3e-08 Score=93.45 Aligned_cols=159 Identities=13% Similarity=0.090 Sum_probs=117.7
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecC-CCCeEEEEEcCCCCEEEEEeC-CCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVH-MGPVKVMRYNPVFDTVISADD-KGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h-~~~V~~l~fspd~~~l~s~s~-dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+|++.++++ .++.|+.||. +++.+.+++.+ ...+.++.+.|+|+++++.+. ++.+..+|. +++. .|.
T Consensus 45 ~pdG~ilvs--~~~~V~~~d~---~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~-----l~~ 113 (276)
T 3no2_A 45 TKAGEILFS--YSKGAKMITR---DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEV-----LSK 113 (276)
T ss_dssp CTTSCEEEE--CBSEEEEECT---TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCE-----EEE
T ss_pred CCCCCEEEe--CCCCEEEECC---CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCE-----EEE
Confidence 457788884 4678999997 47788888865 357899999999999999887 777777775 3332 233
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
+.....+ ..+......+++.++|+++++...++.|..||.. |+.++++...
T Consensus 114 ~~~~~~~---~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~------------------------- 164 (276)
T 3no2_A 114 TEFETGI---ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS------------------------- 164 (276)
T ss_dssp EEECCSC---SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-------------------------
T ss_pred EeccCCC---CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-------------------------
Confidence 2211111 1122234566889999999999999999999998 9999988531
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011436 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
....++.+.++|++|+.++..+ |..+|..||+++..++.++
T Consensus 165 ------------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~ 206 (276)
T 3no2_A 165 ------------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND 206 (276)
T ss_dssp ------------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG
T ss_pred ------------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC
Confidence 0113567889999999888776 9999999999999987543
No 221
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.98 E-value=2.4e-09 Score=106.86 Aligned_cols=152 Identities=10% Similarity=-0.025 Sum_probs=95.8
Q ss_pred CCCcceEEEEe-CCC--CeEEEEEcCCCCCcceEEEecCCCCe-EEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCcee
Q 011436 21 GDVKAGLAISD-RNS--SFVHIYDARADSNEPLISKKVHMGPV-KVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 21 ~~~~~~l~vs~-s~d--~~I~iwd~~~~~~~~~~~l~~h~~~V-~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~ 96 (485)
.+|++..++.. ..+ ..|.+||+. +++. ..+..+...+ ..+.|+||++.|+.++.++.|.+||+.+++...
T Consensus 43 ~SpdG~~l~~~~~~~g~~~l~~~d~~--~~~~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~--- 116 (396)
T 3c5m_A 43 FTQDGKKLLFAGDFDGNRNYYLLNLE--TQQA-VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV--- 116 (396)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETT--TTEE-EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---
T ss_pred CCCCCCEEEEEEecCCCceEEEEECC--CCcE-EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---
Confidence 46777665544 332 468888986 4443 3444333333 347899999999999999999999987754211
Q ss_pred EEEEcCCCceEEeecCCccEEE-------------------EEEcCCCCEEEEE-----eCCCcEEEEECCCCcEEEEec
Q 011436 97 SFRLKSDTNLFEILKSKTTVSA-------------------IEVSPDGKQFSIT-----SPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~v~~-------------------i~~spdg~~lat~-----s~D~~I~iwd~~tg~~~~~~~ 152 (485)
.+..+...... ++|+|||+.++.. ..+..|++||+.+++......
T Consensus 117 -----------~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~ 185 (396)
T 3c5m_A 117 -----------IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ 185 (396)
T ss_dssp -----------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE
T ss_pred -----------EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc
Confidence 11111111111 4578888877655 356789999999888654431
Q ss_pred cchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECC-CCCEEEEecC-------CCeEEEEcccCeE
Q 011436 153 ESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE-SSNFLIYATL-------LGIKIVNLHTNKV 224 (485)
Q Consensus 153 ~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~-~g~~l~~~s~-------~~i~v~d~~tg~~ 224 (485)
. ...+..+.|+| +|+.|++.+. ..|.+||+.+++.
T Consensus 186 ~-------------------------------------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 186 D-------------------------------------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV 228 (396)
T ss_dssp E-------------------------------------SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred C-------------------------------------CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence 1 01124778999 8988887764 2377788776654
Q ss_pred EE
Q 011436 225 SR 226 (485)
Q Consensus 225 v~ 226 (485)
..
T Consensus 229 ~~ 230 (396)
T 3c5m_A 229 RK 230 (396)
T ss_dssp EE
T ss_pred eE
Confidence 33
No 222
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.98 E-value=7.9e-09 Score=101.53 Aligned_cols=177 Identities=11% Similarity=0.057 Sum_probs=104.4
Q ss_pred CCCcceEEEEeCCC---Ce--EEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC-----------------
Q 011436 21 GDVKAGLAISDRNS---SF--VHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK----------------- 78 (485)
Q Consensus 21 ~~~~~~l~vs~s~d---~~--I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d----------------- 78 (485)
.+|++..++..+.+ +. |.+||+. +++... +..+.. +.+++|+||++.|+.++.+
T Consensus 66 ~SpDg~~la~~~~~~~~~~~~l~~~~~~--~g~~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 66 ISPDGKKIAFMRANEEKKVSEIWVADLE--TLSSKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp ECTTSSEEEEEEEETTTTEEEEEEEETT--TTEEEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred ECCCCCEEEEEEeccCCCcceEEEEECC--CCceEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 46777655554432 33 7777875 444443 333334 9999999999988877632
Q ss_pred ----------CcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC-------cEEEEE
Q 011436 79 ----------GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR-------RIRVFW 141 (485)
Q Consensus 79 ----------g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~-------~I~iwd 141 (485)
..|.+||+.+++ .+..+.. . .+..++||||| .+++++.+. ..+||.
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~--------------~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~ 204 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEE--------------VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYI 204 (347)
T ss_dssp --------CEEEEEEEETTTTE--------------EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEE
T ss_pred cCcccccCccceEEEEECCCCe--------------EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEE
Confidence 456677776532 2122333 2 57889999999 777776542 344444
Q ss_pred CCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC---------
Q 011436 142 FRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL--------- 212 (485)
Q Consensus 142 ~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~--------- 212 (485)
+.+++.. .+..+ . ....++|+|++|++.+..
T Consensus 205 ~d~~~~~-~l~~~-------------------------------------~--~~~~~spdg~~l~~~~~~~~~~~~~~~ 244 (347)
T 2gop_A 205 WEDGKEE-KMFEK-------------------------------------V--SFYAVDSDGERILLYGKPEKKYMSEHN 244 (347)
T ss_dssp EETTEEE-EEEEE-------------------------------------E--SEEEEEECSSCEEEEECCSSSCCCSSC
T ss_pred eCCCceE-EeccC-------------------------------------c--ceeeECCCCCEEEEEEccccCCccccc
Confidence 4355543 22110 0 012238999998887643
Q ss_pred CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 213 GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 213 ~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.|.+|| ++++...+.+++.... .... + .|+ +++++..|++++|| -.
T Consensus 245 ~l~~~d--~~~~~~l~~~~~~~~~--~~~~------------------------~--sdg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 245 KLYIYD--GKEVMGILDEVDRGVG--QAKI------------------------K--DGK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EEEEEC--SSCEEESSTTCCSEEE--EEEE------------------------E--TTE-EEEEEEETTEEEEE-EE
T ss_pred eEEEEC--CCceEeccccCCcccC--CccE------------------------E--cCc-EEEEEecCCcEEEE-Ec
Confidence 266666 6666555544432111 0011 1 255 88899999999999 54
No 223
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.97 E-value=1.6e-09 Score=108.16 Aligned_cols=154 Identities=11% Similarity=0.042 Sum_probs=98.6
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEE-------------------EEEcCCCCEEEEE-----eC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKV-------------------MRYNPVFDTVISA-----DD 77 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~-------------------l~fspd~~~l~s~-----s~ 77 (485)
+|++..++..+.++.|++||+. +++.......+...... +.|+|+++.++.+ +.
T Consensus 89 spdg~~l~~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 89 STDERAFFYVKNELNLMKVDLE--TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp CTTSSEEEEEETTTEEEEEETT--TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred CCCCCEEEEEEcCCcEEEEECC--CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 6777777777778899999997 45544444444443222 3456777665543 35
Q ss_pred CCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCcEEEE
Q 011436 78 KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPD------RRIRVFWFRTGKLRRV 150 (485)
Q Consensus 78 dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D------~~I~iwd~~tg~~~~~ 150 (485)
+..|.+||+.+++. ..+..+...+..++|+| ||++|+..+.+ ..|.+||+.+++....
T Consensus 167 ~~~l~~~d~~~g~~---------------~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 167 TCRLIKVDIETGEL---------------EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp CEEEEEEETTTCCE---------------EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred cceEEEEECCCCcE---------------EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence 56788888766331 12334556688999999 89888877653 4688888876553211
Q ss_pred eccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC----C--eEEEEcccCeE
Q 011436 151 YDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL----G--IKIVNLHTNKV 224 (485)
Q Consensus 151 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~----~--i~v~d~~tg~~ 224 (485)
... .....+..++|+|+|++|++.+.. . |.+||+.+++.
T Consensus 232 ~~~-----------------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 232 KEH-----------------------------------AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp SCC-----------------------------------CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred ecc-----------------------------------CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 100 000012467999999998887643 3 89999998876
Q ss_pred EEe
Q 011436 225 SRI 227 (485)
Q Consensus 225 v~~ 227 (485)
...
T Consensus 277 ~~l 279 (396)
T 3c5m_A 277 EEV 279 (396)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 224
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.94 E-value=6e-09 Score=113.28 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=84.6
Q ss_pred cCCCCeEEEEEcCCCCEEE-----EEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEE
Q 011436 55 VHMGPVKVMRYNPVFDTVI-----SADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 129 (485)
Q Consensus 55 ~h~~~V~~l~fspd~~~l~-----s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~la 129 (485)
+|...+.+++|||||++|| +++.+..|++||+.+++.... . .+...+ ..+++|||||+.|+
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--------~----~~~~~~--~~~~~wspDg~~l~ 183 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--------D----VIEGGK--YATPKWTPDSKGFY 183 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--------C----CBSCCT--TCCCEECTTSSEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--------c----ccCccc--ccceEEecCCCEEE
Confidence 4666799999999999888 444557899999988664310 0 011111 25789999999999
Q ss_pred EEeCCCc-------------EEEEECCCCcE--EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCC
Q 011436 130 ITSPDRR-------------IRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 194 (485)
Q Consensus 130 t~s~D~~-------------I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~ 194 (485)
.++.|.. |++|++.+++. ...+.+. .....+
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~----------------------------------~~~~~~ 229 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT----------------------------------GDPTTF 229 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC----------------------------------CCTTCE
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC----------------------------------CCCEEE
Confidence 9998876 99999988762 1122110 001123
Q ss_pred ceEEECCCCCEEEEecCC-----CeEEEEcccCeEEEee
Q 011436 195 SNAIFDESSNFLIYATLL-----GIKIVNLHTNKVSRIL 228 (485)
Q Consensus 195 ~~i~fd~~g~~l~~~s~~-----~i~v~d~~tg~~v~~~ 228 (485)
.++.|||||++|++.+.+ .|.+|+..+++.....
T Consensus 230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~ 268 (695)
T 2bkl_A 230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV 268 (695)
T ss_dssp EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE
T ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee
Confidence 578999999999887643 2666666566544443
No 225
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.93 E-value=1.5e-08 Score=101.76 Aligned_cols=132 Identities=12% Similarity=0.149 Sum_probs=95.8
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
+.+++.+ .++.|++||++ +......+..|..+|.++.+.+.. ++.++.||.+.+||+.++..
T Consensus 97 ~~~L~v~-~~~~l~v~dv~--sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~------------- 158 (388)
T 1xip_A 97 GDQVLVS-TRNALYSLDLE--ELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKST------------- 158 (388)
T ss_dssp TTEEEEE-ESSEEEEEESS--STTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCE-------------
T ss_pred CCEEEEE-cCCcEEEEEch--hhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcc-------------
Confidence 3445555 78999999997 444556677888999998887653 89999999999999976321
Q ss_pred ceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011436 105 NLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 105 ~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
..+...|.|++|||+| ++.|..|++|++|+..++++ .+++...... . .
T Consensus 159 -----~~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~-~---~------------------- 208 (388)
T 1xip_A 159 -----KQLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL-E---E------------------- 208 (388)
T ss_dssp -----EEEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHH-H---T-------------------
T ss_pred -----ccccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccc-c---c-------------------
Confidence 1133569999999999 68899999999999988886 6666321110 0 0
Q ss_pred hHhhhccCCCCCceEEECCCCCEEEE
Q 011436 183 EKEIEKTETAPPSNAIFDESSNFLIY 208 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~~l~~ 208 (485)
+ ..+...+.+|.|.++++||++
T Consensus 209 --~--~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 209 --L--PVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --S--CTTTSEEEEEEESSSSEEEEE
T ss_pred --c--cCCCeeEEEEEEecCCeEEEE
Confidence 0 011234578999999998886
No 226
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.93 E-value=1.2e-07 Score=93.11 Aligned_cols=151 Identities=11% Similarity=-0.013 Sum_probs=108.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
..++.++...+++|.+||.. +++.+.++.. ......++++|++++.++...++.|.+||+.++++..
T Consensus 53 ~~~lyv~~~~~~~v~viD~~--t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~---------- 119 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDIN--TFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG---------- 119 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETT--TCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE----------
T ss_pred CCEEEEEEcCCCEEEEEECc--ccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE----------
Confidence 35677777778999999997 7888888864 4567899999999766666589999999998754322
Q ss_pred CceEEeecCC-----ccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011436 104 TNLFEILKSK-----TTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 104 ~~l~~~~~~~-----~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
.+.... ..+..+++ .+++.+++.. .++.|.+||+.+++.++++...
T Consensus 120 ----~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g----------------------- 171 (328)
T 3dsm_A 120 ----YIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG----------------------- 171 (328)
T ss_dssp ----EEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-----------------------
T ss_pred ----EEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-----------------------
Confidence 122111 14556777 4455555544 4899999999999988776320
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-----------CeEEEEcccCeEEEeec
Q 011436 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-----------GIKIVNLHTNKVSRILG 229 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-----------~i~v~d~~tg~~v~~~~ 229 (485)
.....++++|+|++++++... .|.+||..++++++.+.
T Consensus 172 --------------~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~ 220 (328)
T 3dsm_A 172 --------------IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK 220 (328)
T ss_dssp --------------SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred --------------CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence 011478899999977776543 49999999999887764
No 227
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=98.92 E-value=2.3e-08 Score=98.14 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=66.8
Q ss_pred CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC---Cc--EEEEcCCCCCCCCceeEEEEcCCCceEE
Q 011436 34 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GI--IEYWSPHTLQFPESEVSFRLKSDTNLFE 108 (485)
Q Consensus 34 d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d---g~--i~~Wd~~t~~~~~~~~~~~~~~~~~l~~ 108 (485)
++.|.+||+. +++ .+.+ ..+.+++|||||+.|+.++.+ +. |.+||+.+++ ...
T Consensus 42 ~~~l~~~d~~--~~~-~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~---------------~~~ 99 (347)
T 2gop_A 42 ENTIVIENLK--NNA-RRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS---------------SKK 99 (347)
T ss_dssp EEEEEEEETT--TCC-EEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE---------------EEE
T ss_pred cceEEEEeCC--CCc-eEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc---------------eEE
Confidence 5679999986 443 3444 568899999999998887754 34 5666776532 111
Q ss_pred eecCCccEEEEEEcCCCCEEEEEeCC---------------------------CcEEEEECCCCcEEEEe
Q 011436 109 ILKSKTTVSAIEVSPDGKQFSITSPD---------------------------RRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 109 ~~~~~~~v~~i~~spdg~~lat~s~D---------------------------~~I~iwd~~tg~~~~~~ 151 (485)
+..+.. +.+++|||||+.|+.++.+ ..|++||+.+++.++.+
T Consensus 100 l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l 168 (347)
T 2gop_A 100 ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF 168 (347)
T ss_dssp EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE
T ss_pred EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee
Confidence 222233 8999999999999988743 57889999888864444
No 228
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.92 E-value=6.8e-08 Score=94.92 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=123.2
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCC-----CCeEEEEEcCCCCEEEEEe-CCCcEEEEcCCCCCCCCceeE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHM-----GPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~-----~~V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
++++.++...++.|.+||.. +.+...++.... .....+++ .++.++++.. .++.|.+||+++++...
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~--t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~---- 166 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPK--TYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVD---- 166 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETT--TTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEE----
T ss_pred CCeEEEEECCCCeEEEEECC--CCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEE----
Confidence 45777777678999999997 677777776433 14456777 4444555543 48899999998754322
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCcEEEEeccchhHHHhhhcCCCc
Q 011436 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD----------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D----------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~ 167 (485)
.+... ..+..++++|||+++++...+ +.|.+||..++++.+++.-.
T Consensus 167 ----------~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~------------- 222 (328)
T 3dsm_A 167 ----------ELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK------------- 222 (328)
T ss_dssp ----------EEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-------------
T ss_pred ----------EEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-------------
Confidence 23222 235678999999987776655 78999999999987665210
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCc
Q 011436 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDR 247 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~ 247 (485)
.......++|+|+|++|.++.. .|.+||..++++... .++... ...
T Consensus 223 ----------------------~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~--------~~~~~~--~~~- 268 (328)
T 3dsm_A 223 ----------------------LGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVR--------PFLEFR--DTK- 268 (328)
T ss_dssp ----------------------TTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSS--------CSBCCC--SSC-
T ss_pred ----------------------CCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeee--------eeecCC--CCc-
Confidence 0012358999999998877665 899999998876311 111000 000
Q ss_pred cCcceeeeeccccccccCCCCCC-CCeEEEee----ecCceEEEEecC
Q 011436 248 SSKKVRKIPAAAANANESKEPFS-DPTLLCCA----FKRHRIYLFSRR 290 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~-d~~l~~s~----~~d~~i~~f~~~ 290 (485)
...+.+ .| +..++++. ..+++|++|+..
T Consensus 269 ----p~gi~v-----------dp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 269 ----YYGLTV-----------NPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp ----EEEEEE-----------CTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred ----eEEEEE-----------cCCCCeEEEEcccccccCCEEEEECCC
Confidence 000001 14 67788888 789999999876
No 229
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.90 E-value=1.3e-07 Score=90.98 Aligned_cols=88 Identities=11% Similarity=0.039 Sum_probs=71.1
Q ss_pred CcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC
Q 011436 47 NEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG 125 (485)
Q Consensus 47 ~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg 125 (485)
+..+..+..+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++|+|
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ----------------LSPEMHPSHHQNGHCLNKQG 80 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC----------------EEEEESSCSSEEEEEECTTC
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC----------------eEEEECCCCCcceeeECCCC
Confidence 345566777777889999999998 7788888999999998752 33355566778999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEE
Q 011436 126 KQFSITSPDRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 126 ~~lat~s~D~~I~iwd~~tg~~~~~ 150 (485)
+++++...++.|.+||..+|+....
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEE
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEE
Confidence 9988877789999999999986543
No 230
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.88 E-value=1.8e-06 Score=82.24 Aligned_cols=186 Identities=10% Similarity=0.086 Sum_probs=123.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++++.+.++...++.|.+||.. +. ...+. .+...+.++++++++.+.++...++.|..||.. +++
T Consensus 23 d~~g~l~v~~~~~~~v~~~d~~---~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-------- 89 (299)
T 2z2n_A 23 SDKGKVWITQHKANMISCINLD---GK-ITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-------- 89 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTT---CC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE--------
T ss_pred CCCCCEEEEecCCCcEEEEcCC---CC-eEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE--------
Confidence 4567788887778899999974 22 33332 455789999999999988888778889999875 211
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
....+......+.+++++|+|+.+++...++.|.+||. +++.......
T Consensus 90 -----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~-------------------------- 137 (299)
T 2z2n_A 90 -----KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP-------------------------- 137 (299)
T ss_dssp -----EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS--------------------------
T ss_pred -----EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC--------------------------
Confidence 00111223456899999999999888878899999998 7765422100
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011436 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
........++++++|++.++.... +|.+||. ++++........ ... ..++ .+
T Consensus 138 ---------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~--~~~i-------------~~- 190 (299)
T 2z2n_A 138 ---------NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASG--PVGI-------------TK- 190 (299)
T ss_dssp ---------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCC--EEEE-------------EE-
T ss_pred ---------CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCc--ceeE-------------EE-
Confidence 000122588999999988776654 5999998 777654211100 001 0011 11
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.+++.++++...+++|+.|+.
T Consensus 191 ----------~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 191 ----------GNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp ----------CTTSSEEEEETTTTEEEEECT
T ss_pred ----------CCCCCEEEEccCCceEEEECC
Confidence 156778888888899999976
No 231
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.83 E-value=7.5e-07 Score=84.85 Aligned_cols=186 Identities=10% Similarity=0.045 Sum_probs=122.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKK--VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~--~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++++.+.++...++.|..||.. +. ...+. .+...+.+++++|++.+.++...++.|..||. +++..
T Consensus 65 ~~~g~l~v~~~~~~~i~~~~~~---g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~------- 132 (299)
T 2z2n_A 65 SSDGEVWFTENAANKIGRITKK---GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR------- 132 (299)
T ss_dssp CTTSCEEEEETTTTEEEEECTT---SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-------
T ss_pred CCCCCEEEeCCCCCeEEEECCC---Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-------
Confidence 3567788887778889999974 22 23333 35567899999999999888888889999987 43211
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
...+..+...+.+++++|+|+.+++...++.|..||. +++.......
T Consensus 133 ------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~-------------------------- 179 (299)
T 2z2n_A 133 ------EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIP-------------------------- 179 (299)
T ss_dssp ------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS--------------------------
T ss_pred ------EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCC--------------------------
Confidence 1112223456899999999998888777889999999 7776432100
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011436 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
........++++++|++.+..... +|.+||. +++.... ........ ..++. .
T Consensus 180 ---------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~--~~~i~-------------~- 232 (299)
T 2z2n_A 180 ---------TPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEF-KIPTPNAR--PHAIT-------------A- 232 (299)
T ss_dssp ---------STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCC--EEEEE-------------E-
T ss_pred ---------CCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEE-ECCCCCCC--ceeEE-------------E-
Confidence 000112478999999976666544 5999998 7775432 11100001 01111 1
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.+++.++++...+++|+.|+.
T Consensus 233 ----------~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 233 ----------GAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp ----------CSTTCEEEEETTTTEEEEEET
T ss_pred ----------CCCCCEEEeccCCceEEEECC
Confidence 156778888888899999986
No 232
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.82 E-value=8.7e-08 Score=104.32 Aligned_cols=118 Identities=8% Similarity=0.037 Sum_probs=81.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEE
Q 011436 55 VHMGPVKVMRYNPVFDTVISADDKG-----IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 129 (485)
Q Consensus 55 ~h~~~V~~l~fspd~~~l~s~s~dg-----~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~la 129 (485)
+|...+.+++|||||++|+.++.++ .|++||+.+++.... .+.. ..+.+++|||||+.|+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-------------~~~~--~~~~~~~wspDg~~l~ 186 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-------------VLER--VKFSCMAWTHDGKGMF 186 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-------------EEEE--ECSCCEEECTTSSEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-------------cccC--cccceEEEEeCCCEEE
Confidence 3555788999999999988665433 899999987543211 1111 1256789999999999
Q ss_pred EEeCCCc----------------EEEEECCCCcE--EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCC
Q 011436 130 ITSPDRR----------------IRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 191 (485)
Q Consensus 130 t~s~D~~----------------I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~ 191 (485)
.++.|.. |++|++.+++. ...+.+. ...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~----------------------------------~~~ 232 (710)
T 2xdw_A 187 YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP----------------------------------DEP 232 (710)
T ss_dssp EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT----------------------------------TCT
T ss_pred EEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC----------------------------------CCC
Confidence 9998776 99999988762 1122110 001
Q ss_pred CCCceEEECCCCCEEEEecC-----C-CeEEEEccc
Q 011436 192 APPSNAIFDESSNFLIYATL-----L-GIKIVNLHT 221 (485)
Q Consensus 192 ~~~~~i~fd~~g~~l~~~s~-----~-~i~v~d~~t 221 (485)
....++.|||||++|++.+. . .|.+||+.+
T Consensus 233 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 233 KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 11247899999999998764 3 489999987
No 233
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.82 E-value=6.9e-08 Score=96.95 Aligned_cols=141 Identities=9% Similarity=-0.016 Sum_probs=99.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC---------CcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCc
Q 011436 24 KAGLAISDRNSSFVHIYDARADS---------NEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPES 94 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~---------~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~ 94 (485)
...++++|+.+ .+++|++.... .++.... .+.+ |++|+| |+.+|+.+ .++.|++||+.+....
T Consensus 48 ~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~-- 119 (388)
T 1xip_A 48 SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEF-- 119 (388)
T ss_dssp TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCE--
T ss_pred CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhcc--
Confidence 44556666665 57779875111 2232333 4666 999999 88999888 8899999998774321
Q ss_pred eeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccc
Q 011436 95 EVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAI 174 (485)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 174 (485)
.....+...+.++.+.+. .+|++..||.+.+||+.+++....-
T Consensus 120 ------------~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~~----------------------- 162 (388)
T 1xip_A 120 ------------RTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA----------------------- 162 (388)
T ss_dssp ------------EEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE-----------------------
T ss_pred ------------CccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccccc-----------------------
Confidence 123445566778777655 3899999999999999988864311
Q ss_pred cccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeE--EEee
Q 011436 175 DFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKV--SRIL 228 (485)
Q Consensus 175 ~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~--v~~~ 228 (485)
..+.+++|||+| ++++..++ +++|+..++++ .+++
T Consensus 163 -----------------~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 163 -----------------QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEF 200 (388)
T ss_dssp -----------------ESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred -----------------CCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccccccee
Confidence 023589999999 56666666 99999988887 6677
No 234
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.80 E-value=1.5e-07 Score=103.05 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=74.2
Q ss_pred eCCCCcceEEEEeCCC-----CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCc-------------
Q 011436 19 KQGDVKAGLAISDRNS-----SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGI------------- 80 (485)
Q Consensus 19 ~~~~~~~~l~vs~s~d-----~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~------------- 80 (485)
...+|++..++.++++ ..|++||+. +++.+.. ..+...+..++|+|| +.|+.++.|+.
T Consensus 168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~--tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVA--DGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp EEECTTSSEEEEEEEETTCSEEEEEEEETT--TCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred EEECCCCCEEEEEEcCCCCceEEEEEEECC--CCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence 3456787766655432 469999997 5554432 222222357899999 98888887654
Q ss_pred -EEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC
Q 011436 81 -IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR-----RIRVFWFRTG 145 (485)
Q Consensus 81 -i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~-----~I~iwd~~tg 145 (485)
|.+|++.+.+.. ...++....+...+.++.|||||++|+..+.++ .|++||+.++
T Consensus 244 ~v~~~~lgt~~~~----------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 244 TVWLHRLGTPQSA----------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EEEEEETTSCGGG----------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EEEEEECCCCchh----------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 777877653211 011222223334588999999999998887554 8999999877
No 235
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.73 E-value=1.8e-06 Score=86.48 Aligned_cols=105 Identities=10% Similarity=-0.029 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEcCCCCCCCCceeEEEEcCCCc
Q 011436 36 FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD----------DKGIIEYWSPHTLQFPESEVSFRLKSDTN 105 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s----------~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~ 105 (485)
+|.+||.. +++.+.++.....+ .++||||++.+..+. .++.|.+||..+.+.... ...+..
T Consensus 48 ~v~v~D~~--t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~-----i~~~~~ 118 (373)
T 2mad_H 48 QQWVLDAG--SGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD-----IELPDA 118 (373)
T ss_pred EEEEEECC--CCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEE-----EECCCc
Confidence 89999997 77788888755555 899999999888775 367899999987543321 000000
Q ss_pred eEEeecCCccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEE-ec
Q 011436 106 LFEILKSKTTVSAIEVSPDGKQFSITSP--DRRIRVFWFRTGKLRRV-YD 152 (485)
Q Consensus 106 l~~~~~~~~~v~~i~~spdg~~lat~s~--D~~I~iwd~~tg~~~~~-~~ 152 (485)
..+. +......++|||||++|.+++. +..|.++| .+++.+.+ ++
T Consensus 119 -~~~~-~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~ 165 (373)
T 2mad_H 119 -PRFD-VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS 165 (373)
T ss_pred -cccc-cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC
Confidence 0000 0123568999999999998874 57899999 99999888 63
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.67 E-value=3.6e-09 Score=106.12 Aligned_cols=146 Identities=12% Similarity=0.063 Sum_probs=77.1
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCc
Q 011436 26 GLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTN 105 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~ 105 (485)
..++.++.|+.|+.||.. +++.+.+++. +++.+..+.+++..+++++.|+.|..||.++++.. |.+.....
T Consensus 10 ~~v~~gs~dg~v~a~d~~--tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~-----w~~~~~~~ 80 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKR--TGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL-----TKLPFTIP 80 (369)
T ss_dssp TEEEEEETTSEEEEEETT--TCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS-----EECSCCHH
T ss_pred CEEEEEcCCCEEEEEECC--CCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee-----eeeeccCc
Confidence 345556679999999997 8888888876 56666667778888888899999999999886542 11111000
Q ss_pred eEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHh
Q 011436 106 LFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKE 185 (485)
Q Consensus 106 l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~ 185 (485)
... ...+ +++ ++..+++++.|+.|+.||..+|++++.+..+.
T Consensus 81 --~~~-~~sp----~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------------------------------ 122 (369)
T 2hz6_A 81 --ELV-QASP----CRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------------------------------ 122 (369)
T ss_dssp --HHH-TTCS----CC------CCCCEEEEEEEEECCC------------------------------------------
T ss_pred --ccc-ccCc----eEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------------------------------
Confidence 000 0111 111 34567788889999999999999987763210
Q ss_pred hhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEee
Q 011436 186 IEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRIL 228 (485)
Q Consensus 186 i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~ 228 (485)
...++|++..|++++.++ +..||..+|+++..+
T Consensus 123 ----------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 123 ----------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp --------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred ----------cccccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence 112345777888887765 999999999876554
No 237
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.65 E-value=1.3e-06 Score=83.99 Aligned_cols=189 Identities=13% Similarity=0.152 Sum_probs=115.3
Q ss_pred CCc-ceEEEEeCCCCeEEEEEcCCCCCcceEEE-e-----cCCCCeEEEEEcCCCCEEEEEeCC---------------C
Q 011436 22 DVK-AGLAISDRNSSFVHIYDARADSNEPLISK-K-----VHMGPVKVMRYNPVFDTVISADDK---------------G 79 (485)
Q Consensus 22 ~~~-~~l~vs~s~d~~I~iwd~~~~~~~~~~~l-~-----~h~~~V~~l~fspd~~~l~s~s~d---------------g 79 (485)
+++ +.+.++... ..|.+||.. ++. ..+ . .+...+.+++++|++++.++.+.+ +
T Consensus 79 ~~~~g~l~v~~~~-~~l~~~d~~---g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 79 DRDANQLFVADMR-LGLLVVQTD---GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp CSSSSEEEEEETT-TEEEEEETT---SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred ecCCCcEEEEECC-CCEEEEeCC---CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCC
Confidence 455 677777653 478889974 232 223 1 122458899999999988887655 4
Q ss_pred cEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEc----CCCCEEE-EEeCCCcEEEEECC-CCcEEE--Ee
Q 011436 80 IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVS----PDGKQFS-ITSPDRRIRVFWFR-TGKLRR--VY 151 (485)
Q Consensus 80 ~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~s----pdg~~la-t~s~D~~I~iwd~~-tg~~~~--~~ 151 (485)
.|..||.. +++ ..+..+......++|+ |||+.+. +...++.|++||+. +++... .+
T Consensus 154 ~l~~~~~~-g~~---------------~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~ 217 (314)
T 1pjx_A 154 SIYCFTTD-GQM---------------IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW 217 (314)
T ss_dssp EEEEECTT-SCE---------------EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE
T ss_pred eEEEECCC-CCE---------------EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEE
Confidence 56666653 221 1122222346889999 9997654 44568899999986 554311 11
Q ss_pred ccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC-CCeEEEEcccCeEEEeecc
Q 011436 152 DESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 152 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~i~v~d~~tg~~v~~~~~ 230 (485)
.. +. .........+++|++|++.++... .+|.+||..+|+.+..+..
T Consensus 218 ~~-----------------~~---------------~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~ 265 (314)
T 1pjx_A 218 GH-----------------IP---------------GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC 265 (314)
T ss_dssp EE-----------------CC---------------CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC
T ss_pred EE-----------------CC---------------CCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC
Confidence 00 00 000011247899999998877654 4699999988887666644
Q ss_pred cCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCe-EEEeeecCceEEEEecCC
Q 011436 231 VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPT-LLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 231 ~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-l~~s~~~d~~i~~f~~~~ 291 (485)
+..... .+ +|. +|.. +++++..++.|+.|....
T Consensus 266 ~~~~~~--~i-~~~-------------------------~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 266 PFEKPS--NL-HFK-------------------------PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSSCEE--EE-EEC-------------------------TTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCce--eE-EEC-------------------------CCCCEEEEEeCCCCeEEEEeCCC
Confidence 321111 11 111 5655 888888889999997653
No 238
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.63 E-value=3.8e-06 Score=80.95 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=97.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEec----CCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEcCCC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKV----HMGPVKVMRYNPVFDTVISADDK---------GIIEYWSPHT 88 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~----h~~~V~~l~fspd~~~l~s~s~d---------g~i~~Wd~~t 88 (485)
++++.++++. +..|.+||.. +++....... ....++.++++|+|++.++...+ ..-.+|....
T Consensus 62 ~~dG~l~v~~--~~~l~~~d~~--~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~ 137 (297)
T 3g4e_A 62 RQSGGYVATI--GTKFCALNWK--EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP 137 (297)
T ss_dssp BTTSSEEEEE--TTEEEEEETT--TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred CCCCCEEEEE--CCeEEEEECC--CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence 3466666665 4679999986 4432221111 12457899999999977765322 2234442221
Q ss_pred CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEE-EEEeCCCcEEEEEC--CCCcEE--EEeccchhHHHhhhc
Q 011436 89 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQF-SITSPDRRIRVFWF--RTGKLR--RVYDESLEVAQDLQR 163 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~l-at~s~D~~I~iwd~--~tg~~~--~~~~~~~~~i~~~~~ 163 (485)
...+..+..+......++|+|||+.| ++.+.++.|.+||+ .+|++. +.+..
T Consensus 138 --------------~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~---------- 193 (297)
T 3g4e_A 138 --------------DHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK---------- 193 (297)
T ss_dssp --------------TSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE----------
T ss_pred --------------CCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE----------
Confidence 11122222333457899999999866 45556889999987 577642 11100
Q ss_pred CCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecccC
Q 011436 164 SDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~~ 232 (485)
+... ......+++|++|++.++....+ |.+||..+|++++.+..+.
T Consensus 194 -------~~~~----------------~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 194 -------LEKE----------------EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp -------CCGG----------------GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred -------CCCC----------------CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 0000 00114789999999777665544 9999999999998886653
No 239
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.61 E-value=1.5e-05 Score=75.74 Aligned_cols=187 Identities=11% Similarity=0.051 Sum_probs=121.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcce-EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPL-ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~-~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++++.+.++...++.|..||.. ++.. ..+......+.++++.+++.+.++...++.|..||.. ++...
T Consensus 70 ~~~g~l~v~~~~~~~v~~~d~~---g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~------- 138 (300)
T 2qc5_A 70 SSLGDIWFTENGANKIGKLSKK---GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE------- 138 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-------
T ss_pred CCCCCEEEEecCCCeEEEECCC---CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-------
Confidence 3567788887777889999975 2221 2222345678999999999988888778889999875 32210
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
..+......+.+++++|+|+.+++...++.|..||. +++... +.. +.
T Consensus 139 ------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-----------~~-------------- 185 (300)
T 2qc5_A 139 ------YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPL-----------PT-------------- 185 (300)
T ss_dssp ------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-----------SS--------------
T ss_pred ------ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeC-----------CC--------------
Confidence 112223456899999999998777777889999998 676543 210 00
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccc
Q 011436 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAA 259 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~ 259 (485)
.......++++++|++.++.... .|.+||. +++......... ... ..++. .
T Consensus 186 ---------~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~--~~~i~-------------~-- 237 (300)
T 2qc5_A 186 ---------NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTP-NAR--PHAIT-------------A-- 237 (300)
T ss_dssp ---------TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCC--EEEEE-------------E--
T ss_pred ---------CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCC-CCC--ceEEE-------------E--
Confidence 00122578999999877766554 4899988 666543311100 001 11111 0
Q ss_pred cccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 260 ANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 260 ~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.+++.++++...+++|+.|+.
T Consensus 238 ---------d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 238 ---------GKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp ---------CSTTCEEEEETTTTEEEEECT
T ss_pred ---------CCCCCEEEeccCCCeEEEECC
Confidence 156778888888899999976
No 240
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.61 E-value=3.4e-05 Score=73.18 Aligned_cols=187 Identities=10% Similarity=0.056 Sum_probs=121.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcce-EEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPL-ISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~-~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++++.+.++...++.|.+||.. ++.. ..+..+...+.++++++++.+.++...++.|..||.. ++..
T Consensus 28 d~~g~l~v~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-------- 95 (300)
T 2qc5_A 28 SEDGKVWFTQHKANKISSLDQS---GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-------- 95 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--------
T ss_pred CCCCCEEEEcCCCCeEEEECCC---CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE--------
Confidence 4567788888778999999974 2222 1233445678999999999988887778889999876 3321
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
...+......+.+++++|+|+.+++...++.|..||.. ++.......
T Consensus 96 -----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~--------------------------- 142 (300)
T 2qc5_A 96 -----EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP--------------------------- 142 (300)
T ss_dssp -----EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS---------------------------
T ss_pred -----EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC---------------------------
Confidence 01122233568999999999998887778899999987 765422100
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccc
Q 011436 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAA 259 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~ 259 (485)
........++++++|++.++.... .|.++|. +++.... .... .... ...+ ..
T Consensus 143 --------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~-~~~~-~~~i-------------~~-- 195 (300)
T 2qc5_A 143 --------NKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEY-PLPT-NAAA-PVGI-------------TS-- 195 (300)
T ss_dssp --------STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSS-TTCC-EEEE-------------EE--
T ss_pred --------CCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEe-eCCC-CCCC-cceE-------------EE--
Confidence 000122588999999966665543 4888888 6665432 1111 0000 0011 01
Q ss_pred cccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 260 ANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 260 ~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
.++..++++....++|+.|+.
T Consensus 196 ---------d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 196 ---------GNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp ---------CTTSSEEEEETTTTEEEEECT
T ss_pred ---------CCCCCEEEEccCCCEEEEEcC
Confidence 156778888888889999976
No 241
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.59 E-value=3.1e-06 Score=84.73 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=81.4
Q ss_pred eEEEEeCC----CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEcCCCCCC
Q 011436 26 GLAISDRN----SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD----------DKGIIEYWSPHTLQF 91 (485)
Q Consensus 26 ~l~vs~s~----d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s----------~dg~i~~Wd~~t~~~ 91 (485)
.+.++... ++.|.+.|.. +.+.+.++..-..+ . ++++||++++..++ .++.|.+||..+.+.
T Consensus 46 ~vyV~~~~~~~~~~~V~ViD~~--t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v 121 (386)
T 3sjl_D 46 RVYVNDPAHFAAVTQQFVIDGE--AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP 121 (386)
T ss_dssp EEEEEECGGGCSSEEEEEEETT--TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred EEEEEcCcccCCCCEEEEEECC--CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE
Confidence 44555433 6799999997 78888888855556 4 99999999776654 367899999988554
Q ss_pred CCceeEEEEcCCCceEEeecC-------CccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEec
Q 011436 92 PESEVSFRLKSDTNLFEILKS-------KTTVSAIEVSPDGKQFSITSP--DRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~-------~~~v~~i~~spdg~~lat~s~--D~~I~iwd~~tg~~~~~~~ 152 (485)
... +.-. ......++|+|||+++.++.. ++.|.++|+.+++.+.+++
T Consensus 122 ~~~--------------I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~ 177 (386)
T 3sjl_D 122 TAD--------------IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 177 (386)
T ss_dssp EEE--------------EEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred EEE--------------EECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 322 2110 123567899999999888764 6899999999999998873
No 242
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.57 E-value=4.2e-06 Score=80.46 Aligned_cols=194 Identities=11% Similarity=0.051 Sum_probs=112.4
Q ss_pred CcceEEEE-------eCCCCeEEEEEcCCCCCcceEEEe-----cCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEcCCCC
Q 011436 23 VKAGLAIS-------DRNSSFVHIYDARADSNEPLISKK-----VHMGPVKVMRYNPV-FDTVISADDKGIIEYWSPHTL 89 (485)
Q Consensus 23 ~~~~l~vs-------~s~d~~I~iwd~~~~~~~~~~~l~-----~h~~~V~~l~fspd-~~~l~s~s~dg~i~~Wd~~t~ 89 (485)
+++.+.++ +..++.|.+||.. +++. ..+. ++...+.+++++++ ++++++... ..|.+||.+ +
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~--~g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g 101 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLK--TGKK-TVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-G 101 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTT--TCCE-EEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEEEETT-S
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCC--CCcE-EEEEecccCCCCCCCceEEEecCCCcEEEEECC-CCEEEEeCC-C
Confidence 46677777 5568899999975 4443 3332 25577899999999 776665543 468888876 4
Q ss_pred CCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCcEEEEeccc
Q 011436 90 QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPD---------------RRIRVFWFRTGKLRRVYDES 154 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D---------------~~I~iwd~~tg~~~~~~~~~ 154 (485)
++.. +..... .......+.+++++|+|+.+++...+ +.|..||.. ++.......
T Consensus 102 ~~~~------~~~~~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~- 170 (314)
T 1pjx_A 102 TFEE------IAKKDS---EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA- 170 (314)
T ss_dssp CEEE------CCSBCT---TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-
T ss_pred CEEE------EEeccC---CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC-
Confidence 3210 000000 00112347899999999988877655 567777765 654332210
Q ss_pred hhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEEC----CCCCEEEEe-cC-CCeEEEEcc-cCeEEEe
Q 011436 155 LEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD----ESSNFLIYA-TL-LGIKIVNLH-TNKVSRI 227 (485)
Q Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd----~~g~~l~~~-s~-~~i~v~d~~-tg~~v~~ 227 (485)
......++|+ |+|+.|..+ +. .+|.+||.. +|++...
T Consensus 171 ------------------------------------~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~ 214 (314)
T 1pjx_A 171 ------------------------------------FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214 (314)
T ss_dssp ------------------------------------ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred ------------------------------------CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence 0011477899 999766555 33 459999986 4543110
Q ss_pred ecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 228 LGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 228 ~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
+ .+..+.+... .....+.. .+++.++++...+++|++|+..
T Consensus 215 --------~--~~~~~~~~~~-~~p~~i~~-----------d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 215 --------K--VWGHIPGTHE-GGADGMDF-----------DEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp --------E--EEEECCCCSS-CEEEEEEE-----------BTTCCEEEEEETTTEEEEECTT
T ss_pred --------e--EEEECCCCCC-CCCCceEE-----------CCCCCEEEEEcCCCEEEEEcCC
Confidence 0 0000110000 00000111 2677888888889999999765
No 243
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.55 E-value=1.4e-05 Score=77.01 Aligned_cols=192 Identities=11% Similarity=0.130 Sum_probs=112.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
.+.++++...++.|+.||.. ++. ...+ .+...+.+++++|+++++++. +..|.+||.+++++..
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~--~~~-~~~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~---------- 87 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSF--TKQ-VQRV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVV---------- 87 (297)
T ss_dssp TTEEEEEETTTTEEEEEETT--TCC-EEEE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEE----------
T ss_pred CCEEEEEECCCCEEEEEECC--CCc-EEEE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEE----------
Confidence 56788888888999999986 333 3333 345689999999999966654 5678889887643210
Q ss_pred CceEEee--cCCccEEEEEEcCCCCEEEEEeCC---------CcEEEEECC-CCcEEEEeccchhHHHhhhcCCCccccc
Q 011436 104 TNLFEIL--KSKTTVSAIEVSPDGKQFSITSPD---------RRIRVFWFR-TGKLRRVYDESLEVAQDLQRSDAPLYRL 171 (485)
Q Consensus 104 ~~l~~~~--~~~~~v~~i~~spdg~~lat~s~D---------~~I~iwd~~-tg~~~~~~~~~~~~i~~~~~~~~~~~~~ 171 (485)
+.... .....+.+++++|+|+++++...+ ...+||.+. .++.......
T Consensus 88 --~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~------------------ 147 (297)
T 3g4e_A 88 --LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ------------------ 147 (297)
T ss_dssp --EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE------------------
T ss_pred --EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec------------------
Confidence 11111 112347899999999977765322 233455443 2343222110
Q ss_pred ccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEec-C-CCeEEEEc--ccCeEEEeecccCCccceeeeeeccCCc
Q 011436 172 EAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT-L-LGIKIVNL--HTNKVSRILGKVENNDRFLRIALYQGDR 247 (485)
Q Consensus 172 ~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s-~-~~i~v~d~--~tg~~v~~~~~~~~~~r~~~~s~~~~~~ 247 (485)
....+.++|+|+|+.|..+. . ..|.+|++ .+|++... + .+.-+....
T Consensus 148 -------------------~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~--~~~~~~~~~ 198 (297)
T 3g4e_A 148 -------------------VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR--------R--SVYKLEKEE 198 (297)
T ss_dssp -------------------ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE--------E--EEEECCGGG
T ss_pred -------------------cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc--------E--EEEECCCCC
Confidence 00114789999999775544 3 34899986 56654210 1 000010000
Q ss_pred cCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 248 SSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.....+.+ .+++.+.++....++|+.|+....+
T Consensus 199 --~~p~g~~~-----------d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 199 --QIPDGMCI-----------DAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp --CEEEEEEE-----------BTTSCEEEEEETTTEEEEECTTTCC
T ss_pred --CCCCeeEE-----------CCCCCEEEEEcCCCEEEEEcCCCce
Confidence 00000111 2678888999999999999775333
No 244
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.55 E-value=8.7e-06 Score=82.52 Aligned_cols=111 Identities=10% Similarity=0.040 Sum_probs=73.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG--IIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg--~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++++.+.++...++.|++||.. ++......... .... ++|+|+++.|+.++.++ .|.+|+..+...+..
T Consensus 139 d~~g~lyv~d~~~~~I~~id~~--~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~----- 209 (409)
T 3hrp_A 139 VGNNTVLAYQRDDPRVRLISVD--DNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR----- 209 (409)
T ss_dssp CSTTEEEEEETTTTEEEEEETT--TTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE-----
T ss_pred eCCCCEEEEecCCCcEEEEECC--CCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE-----
Confidence 3577788888888999999986 44444333333 3333 99999999999988876 677777654221110
Q ss_pred EcCCCceEEeec-CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 011436 100 LKSDTNLFEILK-SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 147 (485)
Q Consensus 100 ~~~~~~l~~~~~-~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~ 147 (485)
+-.+.. ....+.+++++|++..|..+..++.|+.||..++..
T Consensus 210 ------~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~ 252 (409)
T 3hrp_A 210 ------IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV 252 (409)
T ss_dssp ------EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE
T ss_pred ------eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE
Confidence 000111 335578899999444444466788999999988764
No 245
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.49 E-value=8.8e-07 Score=88.44 Aligned_cols=103 Identities=10% Similarity=-0.135 Sum_probs=76.9
Q ss_pred cceEEEEeCCCC----eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEcCCCC
Q 011436 24 KAGLAISDRNSS----FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD----------DKGIIEYWSPHTL 89 (485)
Q Consensus 24 ~~~l~vs~s~d~----~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s----------~dg~i~~Wd~~t~ 89 (485)
..++.++...++ +|.++|.. +.+.+.++..-..+ .+.|+||++.+..+. .++.|.+||+.++
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~--t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~ 106 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAG--CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETT--TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred CCeEEEECCccCCccceEEEEECC--CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 355777766666 88899997 88899999855556 799999999777765 4689999999986
Q ss_pred CCCCceeEEEEcCCCceEEeecC-------CccEEEEEEcCCCCEEEEEeC--CCcEEE--EECCC
Q 011436 90 QFPESEVSFRLKSDTNLFEILKS-------KTTVSAIEVSPDGKQFSITSP--DRRIRV--FWFRT 144 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~-------~~~v~~i~~spdg~~lat~s~--D~~I~i--wd~~t 144 (485)
+.... +.-. ......++|||||+++.++.. +..|.+ +|+.+
T Consensus 107 ~vv~~--------------I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 107 LPIAD--------------IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CEEEE--------------EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CEEEE--------------EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 54332 3211 023467899999999988874 467888 99877
No 246
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.47 E-value=3.8e-05 Score=76.79 Aligned_cols=57 Identities=7% Similarity=-0.006 Sum_probs=41.9
Q ss_pred CCCeEEEEEcCCCCCcceEEEecC-------CCCeEEEEEcCCCCEEEEEeC--CCcEEEEcCCCCCCC
Q 011436 33 NSSFVHIYDARADSNEPLISKKVH-------MGPVKVMRYNPVFDTVISADD--KGIIEYWSPHTLQFP 92 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h-------~~~V~~l~fspd~~~l~s~s~--dg~i~~Wd~~t~~~~ 92 (485)
.+++|.+||.. +.+.+.++.-- ...-..++|+|||++|+.++. +..|.++| ++++..
T Consensus 95 ~~~~v~viD~~--t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 95 RTDYVEVFDPV--TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD 160 (373)
T ss_pred CCCeEEEEECC--CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence 36789999997 66777666421 123458999999999888774 47899999 887643
No 247
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.44 E-value=5.1e-05 Score=74.13 Aligned_cols=142 Identities=12% Similarity=0.018 Sum_probs=89.8
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
.+.+++++..++.|.+||.. +++ ...+. +...|.+++|+|+++++++. .+ .|.+||..++++..
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~--~~~-~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~---------- 123 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLA--SGR-KTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTL---------- 123 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETT--TTE-EEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEE----------
T ss_pred CCEEEEEECCCCEEEEEECC--CCc-EEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEE----------
Confidence 36777888778999999986 433 33333 34679999999999987765 34 48888887644211
Q ss_pred CceEEee--cCCccEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccc
Q 011436 104 TNLFEIL--KSKTTVSAIEVSPDGKQFSITSP------DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAID 175 (485)
Q Consensus 104 ~~l~~~~--~~~~~v~~i~~spdg~~lat~s~------D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 175 (485)
+.... .....+.+++++|+|+.+++... .+.|..+| +++.......
T Consensus 124 --~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~---------------------- 177 (326)
T 2ghs_A 124 --HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD---------------------- 177 (326)
T ss_dssp --EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE----------------------
T ss_pred --EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC----------------------
Confidence 00011 11235889999999998776542 23455555 5554322110
Q ss_pred ccchhhhhHhhhccCCCCCceEEECCCCCEEEEec-CC-CeEEEEcc--cC
Q 011436 176 FGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT-LL-GIKIVNLH--TN 222 (485)
Q Consensus 176 ~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s-~~-~i~v~d~~--tg 222 (485)
......++|+|+|++|.++. .. .|.+||.. +|
T Consensus 178 ---------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G 213 (326)
T 2ghs_A 178 ---------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG 213 (326)
T ss_dssp ---------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred ---------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence 00124789999999776654 33 48999975 56
No 248
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.42 E-value=5.6e-06 Score=84.13 Aligned_cols=109 Identities=16% Similarity=0.068 Sum_probs=81.7
Q ss_pred eEEEEeCCC----CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEcCCCCCC
Q 011436 26 GLAISDRNS----SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD----------DKGIIEYWSPHTLQF 91 (485)
Q Consensus 26 ~l~vs~s~d----~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s----------~dg~i~~Wd~~t~~~ 91 (485)
++.++...+ ++|.++|.. +.+.+.++..-..+ .++++||++.+..++ .++.|.++|..+++.
T Consensus 86 ~vyV~n~~~~~~~~~VsVID~~--t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 86 RVYIQDPAHFAAITQQFVIDGS--TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp EEEEEECTTTCSSEEEEEEETT--TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred EEEEECCCcCCCCCeEEEEECC--CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 455555544 799999997 88889988855556 899999999776665 467899999988654
Q ss_pred CCceeEEEEcCCCceEEeecC-------CccEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcEEEEec
Q 011436 92 PESEVSFRLKSDTNLFEILKS-------KTTVSAIEVSPDGKQFSITSP--DRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~-------~~~v~~i~~spdg~~lat~s~--D~~I~iwd~~tg~~~~~~~ 152 (485)
... +.-. ......++|||||+++.++.. ++.|.+.|+.+++.+.+++
T Consensus 162 v~~--------------I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 162 IAD--------------IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp EEE--------------EEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred EEE--------------EECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 322 2100 122456899999999988874 5789999999999988774
No 249
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.40 E-value=3.5e-05 Score=78.07 Aligned_cols=215 Identities=13% Similarity=0.036 Sum_probs=116.2
Q ss_pred CcceEEEEeCCCC--eEEEEEcCCCCCcceEEE----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCcee
Q 011436 23 VKAGLAISDRNSS--FVHIYDARADSNEPLISK----KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 23 ~~~~l~vs~s~d~--~I~iwd~~~~~~~~~~~l----~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~ 96 (485)
+++..++.+..++ .|.+||.. .......+ ..+...+.+++++|++..|..++.++.|..||..+....
T Consensus 180 ~~g~~l~~~d~~~~~~I~~~d~~--~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~---- 253 (409)
T 3hrp_A 180 KDKQRVYSIGWEGTHTVYVYMKA--SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---- 253 (409)
T ss_dssp TTSSEEEEEBSSTTCEEEEEEGG--GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE----
T ss_pred cCCCcEEEEecCCCceEEEEEcC--CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE----
Confidence 3444444444444 78888875 33333444 225567789999995444444778889999998763210
Q ss_pred EEEEcCCCceEEeecCCcc-EE-EEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccc
Q 011436 97 SFRLKSDTNLFEILKSKTT-VS-AIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~-v~-~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
.+.-. ...++... .. .++|+| +|.++++-..++.|+.||.. ++. .++-++.. ... +
T Consensus 254 ~~~~~------~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~~-~~~~g~~~--------~~g-~---- 312 (409)
T 3hrp_A 254 LIKQL------ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD-GEC-EWFCGSAT--------QKT-V---- 312 (409)
T ss_dssp EEEEC------CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT-CCE-EEEEECTT--------CCS-C----
T ss_pred EEecc------cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC-CCE-EEEEeCCC--------CCC-c----
Confidence 00000 01111111 13 899999 46777777778999999875 443 33322110 000 0
Q ss_pred ccccchhhhhHhhhccCCCCCceEEECCCCCEEEEec-CC-CeEEEEcccCeEEEeecccCCccceeeeeeccCCccC--
Q 011436 174 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT-LL-GIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSS-- 249 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s-~~-~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~-- 249 (485)
..|. +... .-.....+++|++|+++++-+ .. .|++|+..+|++....+... ..-+ ..+.+..
T Consensus 313 -~dg~--~~~~-----~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~-~~g~-----~~g~~~~~~ 378 (409)
T 3hrp_A 313 -QDGL--REEA-----LFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVD-VASQ-----IDGTPLEAT 378 (409)
T ss_dssp -BCEE--GGGC-----BCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTT-CBSC-----CCBSTTTCC
T ss_pred -CCCc--cccc-----EeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCC-CCCc-----CCCChhceE
Confidence 0000 0000 001225899999999777766 54 49999988888654443211 0000 0110000
Q ss_pred -cceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 250 -KKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 250 -~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
+....+.+ .+|..++++-...+||+.++.
T Consensus 379 ~~~P~giav-----------d~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 379 FNYPYDICY-----------DGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp BSSEEEEEE-----------CSSSEEEEEESTTCEEEEEEE
T ss_pred eCCceEEEE-----------cCCCCEEEEECCCCeEEEEEe
Confidence 00011111 267899999999999998864
No 250
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.40 E-value=6.9e-06 Score=81.95 Aligned_cols=54 Identities=7% Similarity=0.050 Sum_probs=41.7
Q ss_pred CCCeEEEEEcCCCCCcceEEEecC-------CCCeEEEEEcCCCCEEEEEeC--CCcEEE--EcCCC
Q 011436 33 NSSFVHIYDARADSNEPLISKKVH-------MGPVKVMRYNPVFDTVISADD--KGIIEY--WSPHT 88 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h-------~~~V~~l~fspd~~~l~s~s~--dg~i~~--Wd~~t 88 (485)
.+++|.+||+. +.+.+.++..+ ......++|+|||++++.+.. +..+.+ +|+.+
T Consensus 94 ~~~~VsviD~~--T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 94 RTDYVEVFDPV--TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEEEECTT--TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCCEEEEEECC--CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 47899999998 88888888643 123467899999998888764 467888 98854
No 251
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.39 E-value=3.6e-06 Score=91.28 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=72.0
Q ss_pred CCCCcceEEE-----EeCCCCeEEEEEcCCCCCcceEE-EecCCCCeEEEEEcCCCCEEEEEeCCCc-------------
Q 011436 20 QGDVKAGLAI-----SDRNSSFVHIYDARADSNEPLIS-KKVHMGPVKVMRYNPVFDTVISADDKGI------------- 80 (485)
Q Consensus 20 ~~~~~~~l~v-----s~s~d~~I~iwd~~~~~~~~~~~-l~~h~~~V~~l~fspd~~~l~s~s~dg~------------- 80 (485)
..||+++.++ +|++..+|++||+. +++.+.. +.+. ...+++|+ |++.|+.++.+..
T Consensus 135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~--tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 135 SFSRDGRILAYSLSLAGSDWREIHLMDVE--SKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEEEETT--TCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred EECCCCCEEEEEEecCCCceEEEEEEECC--CCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 4567777665 34444689999997 5554332 2221 12567899 9999998887743
Q ss_pred EEEEcCCCCCCCCceeEEEEcCCCceEEeec-CCccEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc
Q 011436 81 IEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQFSITSP----DRRIRVFWFRTGK 146 (485)
Q Consensus 81 i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~i~~spdg~~lat~s~----D~~I~iwd~~tg~ 146 (485)
|.+|++.+.+.. ...++.... |.....++.|||||++|+..+. +..|++||+.+++
T Consensus 210 v~~~~lgt~~~~----------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 210 VYFHRLGTAQED----------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp EEEEETTSCGGG----------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred EEEEECCCCccc----------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 788877653211 112223333 4455788999999998865442 3589999998763
No 252
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.37 E-value=7.4e-05 Score=71.99 Aligned_cols=170 Identities=10% Similarity=0.033 Sum_probs=102.2
Q ss_pred Ccce-EEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC--------
Q 011436 23 VKAG-LAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE-------- 93 (485)
Q Consensus 23 ~~~~-l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~-------- 93 (485)
+++. +++++..++.|..|+.. +. ...+..+...+..++++++|+++++...++.|.+||.. +++..
T Consensus 54 ~~g~~l~~~d~~~~~i~~~~~~---g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~ 128 (305)
T 3dr2_A 54 EAQRTLVWSDLVGRRVLGWRED---GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGK 128 (305)
T ss_dssp GGGTEEEEEETTTTEEEEEETT---SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTE
T ss_pred CCCCEEEEEECCCCEEEEEeCC---CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCC
Confidence 3444 88888888999999874 22 45566667789999999999977776666788888764 32110
Q ss_pred -----ceeE-------EEE----cC--------------CCceEEeec---------CCccEEEEEEcCCCCEEEEEeCC
Q 011436 94 -----SEVS-------FRL----KS--------------DTNLFEILK---------SKTTVSAIEVSPDGKQFSITSPD 134 (485)
Q Consensus 94 -----~~~~-------~~~----~~--------------~~~l~~~~~---------~~~~v~~i~~spdg~~lat~s~D 134 (485)
..+. |-. .+ ...++.+.. .......++|+|||+.|..+...
T Consensus 129 ~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~ 208 (305)
T 3dr2_A 129 RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTP 208 (305)
T ss_dssp ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECC
T ss_pred ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecC
Confidence 0001 110 00 012333322 11234678899998877666554
Q ss_pred ------CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEE
Q 011436 135 ------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIY 208 (485)
Q Consensus 135 ------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~ 208 (485)
+.|++||+..+. +..... + . .........+++|++|++. +
T Consensus 209 ~~~~~~~~i~~~~~~~~~-l~~~~~----~----------~------------------~~~~~~pdgi~~d~~G~lw-v 254 (305)
T 3dr2_A 209 EQGHGSVEITAFAWRDGA-LHDRRH----F----------A------------------SVPDGLPDGFCVDRGGWLW-S 254 (305)
T ss_dssp C---CCCEEEEEEEETTE-EEEEEE----E----------E------------------CCSSSCCCSEEECTTSCEE-E
T ss_pred CcCCCCCEEEEEEecCCC-ccCCeE----E----------E------------------ECCCCCCCeEEECCCCCEE-E
Confidence 678888876554 211000 0 0 0000112478999999944 4
Q ss_pred ecCCCeEEEEcccCeEEEeecccC
Q 011436 209 ATLLGIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 209 ~s~~~i~v~d~~tg~~v~~~~~~~ 232 (485)
++.++|.+|+. +|+++..+...+
T Consensus 255 ~~~~gv~~~~~-~g~~~~~~~~~~ 277 (305)
T 3dr2_A 255 SSGTGVCVFDS-DGQLLGHIPTPG 277 (305)
T ss_dssp CCSSEEEEECT-TSCEEEEEECSS
T ss_pred ecCCcEEEECC-CCCEEEEEECCC
Confidence 45677999998 577777765544
No 253
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.34 E-value=4.1e-06 Score=82.59 Aligned_cols=230 Identities=11% Similarity=0.108 Sum_probs=123.5
Q ss_pred CCcceEEEEeC--CCCeEEEEEcCCCCCcceEEE-------ecCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEcCC
Q 011436 22 DVKAGLAISDR--NSSFVHIYDARADSNEPLISK-------KVHMGPVKVMRYNPVFDTVISADD-----KGIIEYWSPH 87 (485)
Q Consensus 22 ~~~~~l~vs~s--~d~~I~iwd~~~~~~~~~~~l-------~~h~~~V~~l~fspd~~~l~s~s~-----dg~i~~Wd~~ 87 (485)
+++++++++.. .++.++||.+. +++ +..+ .+|...+..|+|+++++++++-.. +..|.+||+.
T Consensus 25 ~~~g~~~v~~~~~~~~~~~l~~~~--~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~ 101 (343)
T 2qe8_A 25 TPDGRLFLSLHQFYQPEMQVAELT--QDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL 101 (343)
T ss_dssp CTTSCEEEEECGGGCCSCSEEEEE--TTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCceEEEEEC--CCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC
Confidence 45778888853 23436777764 332 2222 245678999999999887665433 5789999988
Q ss_pred CCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCC-CEEEEEe---CCCcEEEEECCCCcEEEEeccchhHHHhhhc
Q 011436 88 TLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDG-KQFSITS---PDRRIRVFWFRTGKLRRVYDESLEVAQDLQR 163 (485)
Q Consensus 88 t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg-~~lat~s---~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~ 163 (485)
++++.+. +.+. .. ...+...+..++++|++ ..+++-+ .++.|.+||+.+++..+.++.+.....
T Consensus 102 tg~~~~~---~~~~--~~---~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~---- 169 (343)
T 2qe8_A 102 NNQLSRV---IYLP--PP---ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAP---- 169 (343)
T ss_dssp TTEEEEE---EECC--TT---TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSC----
T ss_pred CCeEEEE---EECC--hh---hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccc----
Confidence 7543221 1110 00 01223456899999864 4556655 688999999999998887754321100
Q ss_pred CCCcccccccccccchhhh---hHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCcccee-e
Q 011436 164 SDAPLYRLEAIDFGRRMAV---EKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFL-R 239 (485)
Q Consensus 164 ~~~~~~~~~~~~~g~~~~~---~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~-~ 239 (485)
.+. .+..+ |+.+.. ...+. .-......|+|||+|++|.++...+-++|.+.+..+. .+.-...+.. .
T Consensus 170 ~~~-~~~~~----g~~~~~~~~~g~~~-~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~ 240 (343)
T 2qe8_A 170 EDI-DLVID----GVPVQIGQPDGTVI-RPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLS---NLQLTDAELGSK 240 (343)
T ss_dssp CSC-CCEET----TEECBEECTTSCEE-CCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHT---CTTCCHHHHHTT
T ss_pred ccc-ceeEC----CEEEEeccCCCcee-ceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhc---CCCCChhhhhcc
Confidence 000 00000 110000 00000 0011236899999999998887766566665432110 0000000100 0
Q ss_pred eeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEec
Q 011436 240 IALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSR 289 (485)
Q Consensus 240 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~ 289 (485)
+...+......++. ..+|+.++++...+++|++|+.
T Consensus 241 ~~~~g~~g~pdgia--------------~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 241 IERYSEKPICDGIS--------------IDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CEEEEECCSCSCEE--------------ECTTCCEEEEEGGGTEEEEEET
T ss_pred eEecccCCCCceEE--------------ECCCCCEEEEccCCCeEEEEEC
Confidence 01111000011111 1267899999999999999987
No 254
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.34 E-value=1.4e-05 Score=84.48 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=85.8
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC--
Q 011436 66 NPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR-- 143 (485)
Q Consensus 66 spd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~-- 143 (485)
+|.+.++++...++.|.+||..+++.. ..+... ..+..++|||||+++.+++.|+.|.+||+.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~--------------~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~ 228 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIK--------------TVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 228 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEE--------------EEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEE--------------EEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 344557788888999999999885433 224332 346789999999999999999999999996
Q ss_pred CCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEEC----CCCCEEEEecCC--CeEEE
Q 011436 144 TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFD----ESSNFLIYATLL--GIKIV 217 (485)
Q Consensus 144 tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd----~~g~~l~~~s~~--~i~v~ 217 (485)
+++.+.++.. |. ....++|+ |+|++|++++.. .+.++
T Consensus 229 t~~~v~~i~~-----------------------G~--------------~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 229 EPTTVAEIKI-----------------------GS--------------EARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp SCCEEEEEEC-----------------------CS--------------EEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred CCcEeEEEec-----------------------CC--------------CCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 8888766631 00 01378999 799999988864 49999
Q ss_pred EcccCeEEEeec
Q 011436 218 NLHTNKVSRILG 229 (485)
Q Consensus 218 d~~tg~~v~~~~ 229 (485)
|..|+++++++.
T Consensus 272 D~~t~~~~~~i~ 283 (567)
T 1qks_A 272 DGETLEPKKIQS 283 (567)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCcEEEEEe
Confidence 999999988764
No 255
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.29 E-value=4.2e-05 Score=75.24 Aligned_cols=176 Identities=11% Similarity=0.094 Sum_probs=98.0
Q ss_pred CCcceEEEEeCC-----CCeEEEEEcCCCCCcceEEEec------CCCCeEEEEEcCCCC-EEEEEe---CCCcEEEEcC
Q 011436 22 DVKAGLAISDRN-----SSFVHIYDARADSNEPLISKKV------HMGPVKVMRYNPVFD-TVISAD---DKGIIEYWSP 86 (485)
Q Consensus 22 ~~~~~l~vs~s~-----d~~I~iwd~~~~~~~~~~~l~~------h~~~V~~l~fspd~~-~l~s~s---~dg~i~~Wd~ 86 (485)
++++.+.+.... +..|.+||+. +++.++++.. +...+..++++|++. .+++-+ .++.|.+||.
T Consensus 75 d~~g~L~v~D~g~~~~~~~~i~~~d~~--tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~ 152 (343)
T 2qe8_A 75 DGNGIVWMLDNGNQSKSVPKLVAWDTL--NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDL 152 (343)
T ss_dssp CSSSEEEEEECHHHHTSCCEEEEEETT--TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEET
T ss_pred cCCCcEEEEcCCCCcCCCCeEEEEECC--CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEEC
Confidence 456777776543 5789999987 6776776653 234568999998654 456655 6789999998
Q ss_pred CCCCCCCce----------eEEEEcCCCceEEeec------CCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 011436 87 HTLQFPESE----------VSFRLKSDTNLFEILK------SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 87 ~t~~~~~~~----------~~~~~~~~~~l~~~~~------~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~ 150 (485)
.+++..+.. ..+... +..++.... -...+..++|||||+.|..+..++. ++|.+.+....
T Consensus 153 ~~g~~~r~~~~~~~~~~~~~~~~~~-g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~-- 228 (343)
T 2qe8_A 153 QTGLAARVLQGYPGIAPEDIDLVID-GVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLS-- 228 (343)
T ss_dssp TTCCEEEECTTCTTTSCCSCCCEET-TEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHT--
T ss_pred CCCCEEEEecCCCcccccccceeEC-CEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhc--
Confidence 765432100 000000 000100000 0123688999999998888776653 44433211000
Q ss_pred eccchhHHHhhhcCCCcccccccccccchhhhhHhhhc-cCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEE
Q 011436 151 YDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEK-TETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSR 226 (485)
Q Consensus 151 ~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~-~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~ 226 (485)
++... .+++ ...+.. ........+++|++|++.++....+ |.+||..+|++..
T Consensus 229 -~~~~~--------------------~~~~--~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~ 283 (343)
T 2qe8_A 229 -NLQLT--------------------DAEL--GSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKL 283 (343)
T ss_dssp -CTTCC--------------------HHHH--HTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE
T ss_pred -CCCCC--------------------hhhh--hcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEE
Confidence 00000 0000 000000 0111235799999999888877655 9999997777543
No 256
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.25 E-value=2.6e-05 Score=85.18 Aligned_cols=95 Identities=9% Similarity=-0.046 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCCc--ceEEEe--cCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEcCCCCCCCCceeEEEEcCCCce
Q 011436 36 FVHIYDARADSNE--PLISKK--VHMGPVKVMRYNPVFDTVISADDKG-----IIEYWSPHTLQFPESEVSFRLKSDTNL 106 (485)
Q Consensus 36 ~I~iwd~~~~~~~--~~~~l~--~h~~~V~~l~fspd~~~l~s~s~dg-----~i~~Wd~~t~~~~~~~~~~~~~~~~~l 106 (485)
.|++|++. ++. ....+. .|...+.++.|||||++|+..+.++ .|.+||+.++.. ...
T Consensus 244 ~v~~~~lg--t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~------------~~~ 309 (741)
T 1yr2_A 244 TVWLHRLG--TPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI------------GPV 309 (741)
T ss_dssp EEEEEETT--SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE------------CCC
T ss_pred EEEEEECC--CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC------------ccc
Confidence 38899985 333 222333 3444688999999999888776543 788888765310 102
Q ss_pred EEeecCCccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCC
Q 011436 107 FEILKSKTTVSAIEVSPDGKQFSITSPD----RRIRVFWFRTG 145 (485)
Q Consensus 107 ~~~~~~~~~v~~i~~spdg~~lat~s~D----~~I~iwd~~tg 145 (485)
..+..+...+... ++|||+.|+..+.+ ..|.+||+.++
T Consensus 310 ~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 310 TALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 3344444444444 45999999888764 45999999875
No 257
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.24 E-value=9.8e-05 Score=79.96 Aligned_cols=120 Identities=15% Similarity=0.183 Sum_probs=77.2
Q ss_pred cceEEEEeC-----CCCeEEEEEcCCCCCcceEEEec--C-----------------------------CCCeEEEEEcC
Q 011436 24 KAGLAISDR-----NSSFVHIYDARADSNEPLISKKV--H-----------------------------MGPVKVMRYNP 67 (485)
Q Consensus 24 ~~~l~vs~s-----~d~~I~iwd~~~~~~~~~~~l~~--h-----------------------------~~~V~~l~fsp 67 (485)
++.++++.+ .++.|+.||.+ +++.+.++.. + ......++++|
T Consensus 167 ~g~v~vg~~~~~~~~~g~v~a~D~~--tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~ 244 (689)
T 1yiq_A 167 NGKVVIGNGGAEFGVRGYVTAYDAE--TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP 244 (689)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETT--TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET
T ss_pred CCEEEEEeCCCccCCCCEEEEEECC--CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC
Confidence 456666543 26899999997 7888877652 1 01112578999
Q ss_pred CCCEEEEEeCCCc-------------------EEEEcCCCCCCCCceeEEEEcCC-CceEEeecCCccEEEEEEcCCCC-
Q 011436 68 VFDTVISADDKGI-------------------IEYWSPHTLQFPESEVSFRLKSD-TNLFEILKSKTTVSAIEVSPDGK- 126 (485)
Q Consensus 68 d~~~l~s~s~dg~-------------------i~~Wd~~t~~~~~~~~~~~~~~~-~~l~~~~~~~~~v~~i~~spdg~- 126 (485)
+..++..++.++. |..||.+|++. .|.++.. .+...+.. ...+....+..+|+
T Consensus 245 ~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~-----~W~~~~~~~d~wd~~~-~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 245 ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY-----VWHYQTTPGDAWDYTA-TQHMILAELPIDGKP 318 (689)
T ss_dssp TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE-----EEEEESSTTCCSCCCC-CSCEEEEEEEETTEE
T ss_pred CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce-----eEeeecCCcccccccC-CCCcEEEeeccCCcE
Confidence 9999888887764 78888887652 3444321 11111111 12222223334776
Q ss_pred --EEEEEeCCCcEEEEECCCCcEEEEe
Q 011436 127 --QFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 127 --~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
.++.++.++.++++|.+||+++...
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccc
Confidence 7888999999999999999998665
No 258
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.22 E-value=2.3e-05 Score=79.57 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=43.8
Q ss_pred CCCeEEEEEcCCCCCcceEEEecC-------CCCeEEEEEcCCCCEEEEEeC--CCcEEEEcCCCCCCC
Q 011436 33 NSSFVHIYDARADSNEPLISKKVH-------MGPVKVMRYNPVFDTVISADD--KGIIEYWSPHTLQFP 92 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h-------~~~V~~l~fspd~~~l~s~s~--dg~i~~Wd~~t~~~~ 92 (485)
.++.|.++|.. +.+.+.++.-- ......++|+|||+++..+.. ++.|.+.|+.+.+..
T Consensus 147 ~~~~VsviD~~--t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv 213 (426)
T 3c75_H 147 RTDYVEVFDPV--TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD 213 (426)
T ss_dssp EEEEEEEECTT--TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred CCCEEEEEECC--CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE
Confidence 46789999997 77778777521 123457899999998888774 578999999987654
No 259
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.21 E-value=7.7e-06 Score=88.70 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=77.2
Q ss_pred cCCCCeEEEEEcCCCCEEEE-E----eCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEE
Q 011436 55 VHMGPVKVMRYNPVFDTVIS-A----DDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFS 129 (485)
Q Consensus 55 ~h~~~V~~l~fspd~~~l~s-~----s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~la 129 (485)
+|...+..++|||||++||- . +.+..|++||+++++.... .+... ...+++|+ ||+.|+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-------------~~~~~--k~~~~~Ws-Dg~~l~ 189 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-------------PLKDV--KFSGISWL-GNEGFF 189 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-------------EEEEE--ESCCCEEE-TTTEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-------------ccCCc--eeccEEEe-CCCEEE
Confidence 46667889999999998772 2 3335799999988653211 11111 12467899 999999
Q ss_pred EEeCCCc-------------EEEEECCCCcE--EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCC
Q 011436 130 ITSPDRR-------------IRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPP 194 (485)
Q Consensus 130 t~s~D~~-------------I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~ 194 (485)
.++.|.. |++|++.++.. ...+.+.. ......
T Consensus 190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~---------------------------------~~~~~~ 236 (693)
T 3iuj_A 190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIP---------------------------------AQHHRY 236 (693)
T ss_dssp EEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSG---------------------------------GGCCSE
T ss_pred EEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCC---------------------------------CCCeEE
Confidence 9988743 89999877652 22221100 001112
Q ss_pred ceEEECCCCCEEEEecC----C-CeEEEEcccC
Q 011436 195 SNAIFDESSNFLIYATL----L-GIKIVNLHTN 222 (485)
Q Consensus 195 ~~i~fd~~g~~l~~~s~----~-~i~v~d~~tg 222 (485)
.++.|||||++|+..+. . .|.++|+.++
T Consensus 237 ~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~ 269 (693)
T 3iuj_A 237 VGATVTEDDRFLLISAANSTSGNRLYVKDLSQE 269 (693)
T ss_dssp EEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred EEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence 47889999999876543 2 4888998776
No 260
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.19 E-value=8.5e-05 Score=72.50 Aligned_cols=156 Identities=10% Similarity=0.013 Sum_probs=91.6
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecC-----CCCeEEEEEcCCCCEEEEEeCC----CcEEEEcCCCCCCCC
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVH-----MGPVKVMRYNPVFDTVISADDK----GIIEYWSPHTLQFPE 93 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h-----~~~V~~l~fspd~~~l~s~s~d----g~i~~Wd~~t~~~~~ 93 (485)
+++.++++. . ..|.+||.. +++. ..+... ...+..++++|+|+++++...+ +...||...+++
T Consensus 99 ~dg~l~v~~-~-~gl~~~d~~--~g~~-~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~--- 170 (326)
T 2ghs_A 99 SDSKQLIAS-D-DGLFLRDTA--TGVL-TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK--- 170 (326)
T ss_dssp ETTEEEEEE-T-TEEEEEETT--TCCE-EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE---
T ss_pred CCCeEEEEE-C-CCEEEEECC--CCcE-EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc---
Confidence 456677765 3 349999986 4443 233211 2468899999999987765422 233444221221
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEE-eCCCcEEEEECC--CC-cEE--EEeccchhHHHhhhcCCCc
Q 011436 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT-SPDRRIRVFWFR--TG-KLR--RVYDESLEVAQDLQRSDAP 167 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~-s~D~~I~iwd~~--tg-~~~--~~~~~~~~~i~~~~~~~~~ 167 (485)
+..+..+......++|+|||+.+..+ +.++.|.+||+. +| +.. +.+..
T Consensus 171 ------------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~-------------- 224 (326)
T 2ghs_A 171 ------------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFID-------------- 224 (326)
T ss_dssp ------------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEE--------------
T ss_pred ------------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEE--------------
Confidence 11122222346789999999876554 457899999986 66 320 11100
Q ss_pred ccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC-CCeEEEEcccCeEEEeecccC
Q 011436 168 LYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 168 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~i~v~d~~tg~~v~~~~~~~ 232 (485)
+.. .......+++|++|++.++... .+|.+||. +|++++.+....
T Consensus 225 ---~~~----------------~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~ 270 (326)
T 2ghs_A 225 ---STG----------------IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG 270 (326)
T ss_dssp ---CTT----------------SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC
T ss_pred ---CCC----------------CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC
Confidence 000 0001147889999997776544 45999998 688777765443
No 261
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.15 E-value=0.00016 Score=69.69 Aligned_cols=83 Identities=11% Similarity=-0.050 Sum_probs=62.3
Q ss_pred cceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCC
Q 011436 48 EPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGK 126 (485)
Q Consensus 48 ~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~ 126 (485)
..+..+..+........|+|+++ ++.+...++.|..|+. +++ +..+..+...+..++++|+|+
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~---------------~~~~~~~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT---------------VDVLLDATAFTNGNAVDAQQR 98 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC---------------EEEEEESCSCEEEEEECTTSC
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC---------------EEEEeCCCCccceeeECCCCC
Confidence 44566666667788999999998 6667777889999986 322 223444556789999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcE
Q 011436 127 QFSITSPDRRIRVFWFRTGKL 147 (485)
Q Consensus 127 ~lat~s~D~~I~iwd~~tg~~ 147 (485)
++++...++.|.+||.. |+.
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCE
T ss_pred EEEEECCCCEEEEECCC-CCE
Confidence 87776667899999986 664
No 262
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.12 E-value=0.00013 Score=78.88 Aligned_cols=121 Identities=15% Similarity=0.218 Sum_probs=79.3
Q ss_pred cceEEEEeCC-----CCeEEEEEcCCCCCcceEEEecCCCC--------------------------------eEEEEEc
Q 011436 24 KAGLAISDRN-----SSFVHIYDARADSNEPLISKKVHMGP--------------------------------VKVMRYN 66 (485)
Q Consensus 24 ~~~l~vs~s~-----d~~I~iwd~~~~~~~~~~~l~~h~~~--------------------------------V~~l~fs 66 (485)
++.++++.+. ++.|+.||.. +++.+.++...... ...++++
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~--tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d 251 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAE--TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD 251 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETT--TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE
T ss_pred CCEEEEEecccccCCCCEEEEEECC--CCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc
Confidence 3455555432 7899999997 78888877632211 1357889
Q ss_pred CCCCEEEEEeCCC-------------------cEEEEcCCCCCCCCceeEEEEcCC-CceEEeecCCccEEEEEEcCCC-
Q 011436 67 PVFDTVISADDKG-------------------IIEYWSPHTLQFPESEVSFRLKSD-TNLFEILKSKTTVSAIEVSPDG- 125 (485)
Q Consensus 67 pd~~~l~s~s~dg-------------------~i~~Wd~~t~~~~~~~~~~~~~~~-~~l~~~~~~~~~v~~i~~spdg- 125 (485)
|++.++..+..++ .|..+|..|++. .|.++.. .+...+..... ..-+....||
T Consensus 252 ~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~-----~W~~~~~~~d~wd~~~~~~-p~l~~~~~dG~ 325 (677)
T 1kb0_A 252 AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY-----KWHYQETPGDNWDYTSTQP-MILADIKIAGK 325 (677)
T ss_dssp TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-----EEEEESSTTCCSCCCCCSC-CEEEEEEETTE
T ss_pred CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE-----EEEEecCCCcccccccCCC-cEEEecccCCc
Confidence 9999888777664 477788887652 3444321 11111111122 2333445588
Q ss_pred --CEEEEEeCCCcEEEEECCCCcEEEEec
Q 011436 126 --KQFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 126 --~~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
..++.++.++.++++|..||+++..+.
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 688999999999999999999988774
No 263
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.11 E-value=1.7e-06 Score=86.43 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=73.9
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcE
Q 011436 68 VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKL 147 (485)
Q Consensus 68 d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~ 147 (485)
++..+++++.|+.|..||..+++. .|.++ . ..+.+..+.++|+.+++++.|+.|+.||..+|+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-----~W~~~---------~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-----KWTLK---------E--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-----EEEEE---------C--CCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-----EEEec---------C--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 578899999999999999988653 23332 2 2344455667888888888999999999999998
Q ss_pred EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEE
Q 011436 148 RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSR 226 (485)
Q Consensus 148 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~ 226 (485)
++.+..+..... . .+..++ .+..|++++.++ +..||..||+++.
T Consensus 72 ~w~~~~~~~~~~--~--------------------------------~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w 116 (369)
T 2hz6_A 72 LTKLPFTIPELV--Q--------------------------------ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ 116 (369)
T ss_dssp SEECSCCHHHHH--T--------------------------------TCSCC------CCCCEEEEEEEEECCC------
T ss_pred eeeeeccCcccc--c--------------------------------cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE
Confidence 777643221110 0 001111 233455566555 9999999999887
Q ss_pred eecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCCC
Q 011436 227 ILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPEE 294 (485)
Q Consensus 227 ~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~~ 294 (485)
.+..+. ..++ .|+...++.++.|++++.|+.+..+.
T Consensus 117 ~~~~~~-~~~~-------------------------------~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 117 TLSSAF-ADSL-------------------------------SPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp ------------------------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred EecCCC-cccc-------------------------------cccCCEEEEEecCCEEEEEECCCCCE
Confidence 665433 1110 03455677888899999998876553
No 264
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.02 E-value=3.9e-05 Score=76.69 Aligned_cols=122 Identities=15% Similarity=0.010 Sum_probs=85.9
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-----
Q 011436 63 MRYNPVFDTVISADD-----KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS----- 132 (485)
Q Consensus 63 l~fspd~~~l~s~s~-----dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s----- 132 (485)
....|+++.+..++. ++.|.+.|..+++.. ..+.....+ .+++||||+++.+++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--------------~~I~vG~~P--~va~spDG~~lyVan~~~~r 101 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--------------GMIDGGFLP--NPVVADDGSFIAHASTVFSR 101 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--------------EEEEECSSC--EEEECTTSSCEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE--------------EEEECCCCC--cEEECCCCCEEEEEcccccc
Confidence 345789988777765 678989999875433 335444444 399999999887765
Q ss_pred -----CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEE
Q 011436 133 -----PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 207 (485)
Q Consensus 133 -----~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~ 207 (485)
.++.|.+||+.+++.+.++.-.. |+|. .....-..++|+|||++|.
T Consensus 102 ~~~G~~~~~VsviD~~t~~v~~~I~v~~---------------------g~r~--------~~g~~P~~~a~spDGk~ly 152 (386)
T 3sjl_D 102 IARGERTDYVEVFDPVTLLPTADIELPD---------------------APRF--------LVGTYPWMTSLTPDGKTLL 152 (386)
T ss_dssp TTEEEEEEEEEEECTTTCCEEEEEEETT---------------------CCCC--------CBSCCGGGEEECTTSSEEE
T ss_pred cccCCCCCEEEEEECCCCeEEEEEECCC---------------------cccc--------ccCCCCceEEEcCCCCEEE
Confidence 36789999999999988773100 0000 0001124789999999888
Q ss_pred EecC---CCeEEEEcccCeEEEeec
Q 011436 208 YATL---LGIKIVNLHTNKVSRILG 229 (485)
Q Consensus 208 ~~s~---~~i~v~d~~tg~~v~~~~ 229 (485)
.+.. ..|.++|+.++++++++.
T Consensus 153 Van~~~~~~VsVID~~t~~vv~tI~ 177 (386)
T 3sjl_D 153 FYQFSPAPAVGVVDLEGKAFKRMLD 177 (386)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEE
Confidence 7753 349999999999998884
No 265
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.01 E-value=0.0003 Score=66.56 Aligned_cols=204 Identities=10% Similarity=-0.060 Sum_probs=119.1
Q ss_pred CcceEEEEeCC--CCeEEEEEcCCCCCcceEEEec-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 23 VKAGLAISDRN--SSFVHIYDARADSNEPLISKKV-HMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 23 ~~~~l~vs~s~--d~~I~iwd~~~~~~~~~~~l~~-h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
+++.+.++.+. +++|+++|+. +++.++++.- .......++++. +.+.++.-.++.+.++|.++++...
T Consensus 30 ~dg~Lyvstg~~~~s~v~~iD~~--tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~------ 100 (266)
T 2iwa_A 30 ENDTLFESTGLYGRSSVRQVALQ--TGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIK------ 100 (266)
T ss_dssp STTEEEEEECSTTTCEEEEEETT--TCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEE------
T ss_pred CCCeEEEECCCCCCCEEEEEECC--CCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEE------
Confidence 34677777653 6899999997 7888888752 212223455542 2444555577899999998854332
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
.+.-... ....+++||+++.++..++.|.++|..+.+.++++.-... ++
T Consensus 101 --------~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~--------------------~~- 149 (266)
T 2iwa_A 101 --------NFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN--------------------GH- 149 (266)
T ss_dssp --------EEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET--------------------TE-
T ss_pred --------EEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC--------------------Cc-
Confidence 2322101 1234667888777767788999999999998887731000 00
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecC-CCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011436 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
.....+.+.|. +|+..+..-. +.|-++|..+|+++.++.-...... ..-...+......-+++
T Consensus 150 ----------p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~----~~~~~~~~~~v~nGIa~- 213 (266)
T 2iwa_A 150 ----------RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKK----LIDEGFRDIDVLNGIAW- 213 (266)
T ss_dssp ----------ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHH----HHHTTCTTCCCEEEEEE-
T ss_pred ----------ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccc----cccccccccCceEEEEE-
Confidence 00012466777 6754444332 4599999999999988853210000 00000000001111111
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
+.....+++|+....++|...-..
T Consensus 214 ---------~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 214 ---------DQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp ---------ETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ---------cCCCCEEEEECCCCCeEEEEEEec
Confidence 112368999999999999986543
No 266
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.01 E-value=0.00026 Score=71.63 Aligned_cols=114 Identities=13% Similarity=0.038 Sum_probs=80.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC--CcceEEEe-------cCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEcCCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADS--NEPLISKK-------VHMGPVKVMRYNPVFDTVISADDK------GIIEYWSPHT 88 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~--~~~~~~l~-------~h~~~V~~l~fspd~~~l~s~s~d------g~i~~Wd~~t 88 (485)
..++.+++..++.|.|+|+..+. .+..++++ .-...-..+..+|+| +++|+..+ +.|.+.|.++
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence 45677888889999999986221 24556663 011234667888999 88887766 7899999988
Q ss_pred CCCCCceeEEEEcCCCceEEeec--C-CccEEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCc
Q 011436 89 LQFPESEVSFRLKSDTNLFEILK--S-KTTVSAIEVSPDGKQFSITS-------------------PDRRIRVFWFRTGK 146 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~--~-~~~v~~i~~spdg~~lat~s-------------------~D~~I~iwd~~tg~ 146 (485)
++.... +.. . ......+-|+|+++.+++.. .+.+|.+||+.+++
T Consensus 174 ~~v~~~--------------~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 174 FEPLGK--------------WEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp CCEEEE--------------CCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CeEEEE--------------EccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 665433 221 1 12234678999999888874 37899999999998
Q ss_pred EEEEec
Q 011436 147 LRRVYD 152 (485)
Q Consensus 147 ~~~~~~ 152 (485)
.+++++
T Consensus 240 ~~~tI~ 245 (462)
T 2ece_A 240 RIHSLT 245 (462)
T ss_dssp EEEEEE
T ss_pred EeeEEe
Confidence 888774
No 267
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.94 E-value=0.00041 Score=75.02 Aligned_cols=157 Identities=9% Similarity=0.007 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCCcceEEEec--CC-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEcCCCCCCCCc----eeEEE
Q 011436 36 FVHIYDARADSNEPLISKKV--HM-------GPVKVMRYNPVFD---TVISADDKGIIEYWSPHTLQFPES----EVSFR 99 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~--h~-------~~V~~l~fspd~~---~l~s~s~dg~i~~Wd~~t~~~~~~----~~~~~ 99 (485)
.|..||.+ +++.+..++. |. .++.......+|+ .++.++.+|.+.++|.+++++... .+.|.
T Consensus 276 ~v~AlD~~--TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 276 SIVAVNAD--TGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT 353 (689)
T ss_dssp EEEEEETT--TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eEEEEEcc--CCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence 49999997 8888887763 32 2233333334665 788999999999999999876411 00011
Q ss_pred E----cCCCceEE------eecCCc-----------cEEEEEEcCCCCEEEEEeC-------------------------
Q 011436 100 L----KSDTNLFE------ILKSKT-----------TVSAIEVSPDGKQFSITSP------------------------- 133 (485)
Q Consensus 100 ~----~~~~~l~~------~~~~~~-----------~v~~i~~spdg~~lat~s~------------------------- 133 (485)
. +.+.++.. +...+. .-..++|+|+...+.+...
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 1 00111000 000000 1123789998888776532
Q ss_pred --------------------CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCC
Q 011436 134 --------------------DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAP 193 (485)
Q Consensus 134 --------------------D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~ 193 (485)
++.|+.||+.||+.++.+..+. +
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-------------------------------------~ 476 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-------------------------------------I 476 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-------------------------------------S
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-------------------------------------C
Confidence 3678899999999887764310 1
Q ss_pred CceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeeccc
Q 011436 194 PSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 194 ~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~ 231 (485)
...-.+...|.++.+++.++ ++.||..||+++..+...
T Consensus 477 ~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 477 FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 12234556788889999887 999999999999777543
No 268
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.93 E-value=0.00031 Score=66.00 Aligned_cols=154 Identities=9% Similarity=-0.025 Sum_probs=100.1
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCe--EEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPV--KVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V--~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
.+.|.+|.+.++.|+++|++ +++.++++ -. ... ..+++.. +++.+..-.++.+.++|.++++....
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~--Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t------- 131 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLE--SAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT------- 131 (268)
T ss_dssp TTEEEEEETTTTEEEECCSS--CSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE-------
T ss_pred CCEEEEEcCCCCEEEEEECC--CCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE-------
Confidence 46788888899999999998 77777766 22 222 3355533 24455555788999999988554332
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
+.-.. .-. .+++||+.|..+..+..|+++|..|.+.++++.-.. . ++
T Consensus 132 -------i~~~~-eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~--------~------------g~--- 178 (268)
T 3nok_A 132 -------TRYSG-EGW--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL--------R------------GQ--- 178 (268)
T ss_dssp -------EECSS-CCC--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE--------T------------TE---
T ss_pred -------EeCCC-cee--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC--------C------------Cc---
Confidence 33211 112 334678888777779999999999999988773100 0 00
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEecC-CCeEEEEcccCeEEEeeccc
Q 011436 182 VEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~i~v~d~~tg~~v~~~~~~ 231 (485)
.....+.+.|. +|+..+..-. +.|.++|..||+++.++...
T Consensus 179 --------~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 179 --------PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp --------ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred --------ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 00112456676 7764444433 45999999999999888553
No 269
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.88 E-value=0.00022 Score=76.96 Aligned_cols=151 Identities=9% Similarity=0.013 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCCcceEEEec--CC-------CCeEEEEEcCCC---CEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 36 FVHIYDARADSNEPLISKKV--HM-------GPVKVMRYNPVF---DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~--h~-------~~V~~l~fspd~---~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
+|..+|.. +++.+..++. |. .....+....+| ..++.++.+|.+.++|.+++++. |..+..
T Consensus 284 sv~AlD~~--TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l-----~~~~~~ 356 (677)
T 1kb0_A 284 SIVALDPD--TGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFI-----SAKNFV 356 (677)
T ss_dssp EEEEECTT--TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE-----EEEESS
T ss_pred EEEEEECC--CCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEe-----cccccc
Confidence 58889987 7888877763 31 222334445577 68899999999999999998753 222211
Q ss_pred ------------CceE------------Eee---cCCccEEEEEEcCCCCEEEEEeCC----------------------
Q 011436 104 ------------TNLF------------EIL---KSKTTVSAIEVSPDGKQFSITSPD---------------------- 134 (485)
Q Consensus 104 ------------~~l~------------~~~---~~~~~v~~i~~spdg~~lat~s~D---------------------- 134 (485)
..+. .+. +... -..++|+|++.++.+...+
T Consensus 357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~-w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~ 435 (677)
T 1kb0_A 357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN-WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQ 435 (677)
T ss_dssp CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC-SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTT
T ss_pred ccCcccccCCCCceeeccccCcCCCccEECcCcccccC-CCCceEcCCCCEEEEeChhcceeeecccccccccccccccc
Confidence 1110 000 0000 1257899998888775432
Q ss_pred ---------------------CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCC
Q 011436 135 ---------------------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAP 193 (485)
Q Consensus 135 ---------------------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~ 193 (485)
+.|..||+.||+.++.+... .+
T Consensus 436 ~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-------------------------------------~~ 478 (677)
T 1kb0_A 436 SGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-------------------------------------SP 478 (677)
T ss_dssp GGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-------------------------------------SS
T ss_pred cccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-------------------------------------CC
Confidence 67999999999988776321 01
Q ss_pred CceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeeccc
Q 011436 194 PSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 194 ~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~~ 231 (485)
.....+...|..+++++.++ +++||..||+++..+.-.
T Consensus 479 ~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 517 (677)
T 1kb0_A 479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (677)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence 12344566788888888887 999999999999887543
No 270
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.83 E-value=0.00091 Score=63.25 Aligned_cols=155 Identities=12% Similarity=0.052 Sum_probs=101.6
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
..+.++.-.++.+.++|.. +.+.+.+++.- .+ ....+++|++.+..+..++.|.++|+++++..+.
T Consensus 76 ~~lyv~t~~~~~v~viD~~--t~~v~~~i~~g-~~-~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~---------- 141 (266)
T 2iwa_A 76 EKLYQVVWLKNIGFIYDRR--TLSNIKNFTHQ-MK-DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKK---------- 141 (266)
T ss_dssp TEEEEEETTCSEEEEEETT--TTEEEEEEECC-SS-SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEE----------
T ss_pred CEEEEEEecCCEEEEEECC--CCcEEEEEECC-CC-CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEE----------
Confidence 4677777789999999997 78888888632 11 1234667887666666788999999988664433
Q ss_pred ceEEee--cC---CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc-hhHHHhhhcCCCcccccccccccc
Q 011436 105 NLFEIL--KS---KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDES-LEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 105 ~l~~~~--~~---~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
+. .+ -..++.+.|. +|+.++....+..|.+.|+.+++++..++-. ...-. ..
T Consensus 142 ----I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~-~~---------------- 199 (266)
T 2iwa_A 142 ----HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL-ID---------------- 199 (266)
T ss_dssp ----EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH-HH----------------
T ss_pred ----EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc-cc----------------
Confidence 21 11 1236778888 8877777767889999999999999988532 10000 00
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecC-C-CeEEEEcccC
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-L-GIKIVNLHTN 222 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~-~i~v~d~~tg 222 (485)
-........+.|+|+|+|+.|..+.. . .+.++++.+.
T Consensus 200 -------~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 200 -------EGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp -------TTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred -------ccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 00011123368999999986665554 3 3666666543
No 271
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.83 E-value=0.0014 Score=68.52 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=64.3
Q ss_pred CCCcce-EEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEE-c-CCCCEEEEEeC------------------C
Q 011436 21 GDVKAG-LAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRY-N-PVFDTVISADD------------------K 78 (485)
Q Consensus 21 ~~~~~~-l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~f-s-pd~~~l~s~s~------------------d 78 (485)
+.++++ +.++...+..|.+-|+. +.++...++ ........+++ + |+++++..++. +
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~--t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCD--VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETT--TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCcCCCEEEEEcCCCCEEEEEECC--CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence 344444 56666677889999997 777777444 12345788898 5 99998888752 3
Q ss_pred CcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC
Q 011436 79 GIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 135 (485)
Q Consensus 79 g~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~ 135 (485)
+.+.+.|.++.+ +.|++. -.. ....++++|||+++.+.+.+.
T Consensus 175 ~~vtvID~~t~~-----v~~qI~---------Vgg-~pd~~~~spdGk~~~vt~~~s 216 (595)
T 1fwx_A 175 NVFTAVDADKWE-----VAWQVL---------VSG-NLDNCDADYEGKWAFSTSYNS 216 (595)
T ss_dssp EEEEEEETTTTE-----EEEEEE---------ESS-CCCCEEECSSSSEEEEEESCT
T ss_pred ceEEEEECCCCe-----EEEEEE---------eCC-CccceEECCCCCEEEEEecCc
Confidence 467777777632 223322 111 235578999999999988653
No 272
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.81 E-value=0.0059 Score=57.13 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=107.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.+.++....+.|..+|.. .......+.........++++|++..| ++-...+.|.+++.....
T Consensus 47 ~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~------------ 112 (267)
T 1npe_A 47 DKVVYWTDISEPSIGRASLH--GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ------------ 112 (267)
T ss_dssp TTEEEEEETTTTEEEEEESS--SCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------
T ss_pred CCEEEEEECCCCEEEEEecC--CCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC------------
Confidence 56788888788999999986 333323333333567899999976544 455566788888765311
Q ss_pred CCceEEe-ecCCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 103 DTNLFEI-LKSKTTVSAIEVSPDGKQFSITSP---DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 103 ~~~l~~~-~~~~~~v~~i~~spdg~~lat~s~---D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
...+ .........++++|++.+|..+.. .+.|..+++. |+..+.+..
T Consensus 113 ---~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~------------------------- 163 (267)
T 1npe_A 113 ---RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQ------------------------- 163 (267)
T ss_dssp ---CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEEC-------------------------
T ss_pred ---EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEE-------------------------
Confidence 1111 112245789999996555444333 3578777764 322222200
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeee
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIP 256 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~ 256 (485)
........+++|+++++|..+.. ..|.++|..++.....+.+.. .| .++ +.
T Consensus 164 ----------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~-------------~P--~gi-~~- 216 (267)
T 1npe_A 164 ----------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-------------YP--FAV-TS- 216 (267)
T ss_dssp ----------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-------------SE--EEE-EE-
T ss_pred ----------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCC-------------Cc--eEE-EE-
Confidence 00011258899998876655544 348888886544322221100 00 001 11
Q ss_pred ccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 257 AAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 257 ~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.+..++++....++|+.++....+
T Consensus 217 -------------d~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 217 -------------YGKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp -------------ETTEEEEEETTTTEEEEEETTTTE
T ss_pred -------------eCCEEEEEECCCCeEEEEeCCCCC
Confidence 245678888888999999876444
No 273
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.78 E-value=0.0013 Score=63.31 Aligned_cols=34 Identities=6% Similarity=-0.013 Sum_probs=21.5
Q ss_pred ceEEECCCCCEEEEecCCCeEEEEcccCeEEEeec
Q 011436 195 SNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILG 229 (485)
Q Consensus 195 ~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~ 229 (485)
.++..+++|++.+.....++..+|. +|+.+..+.
T Consensus 258 ~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~ 291 (330)
T 3hxj_A 258 SSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFE 291 (330)
T ss_dssp SCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred ccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEE
Confidence 3566777776554433346888886 777665543
No 274
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.77 E-value=0.0019 Score=60.53 Aligned_cols=156 Identities=11% Similarity=0.031 Sum_probs=98.4
Q ss_pred cceEEEEeCCCC--eEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSS--FVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVIS-ADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~--~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s-~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++.+.+|.+.+| .|+++|++ +++.++++.... ........++++.|.. .-.++.+.++|.++++....
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~--Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t------ 122 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIE--SGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS------ 122 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTT--TCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE------
T ss_pred CCEEEEECCCCCCceEEEEECC--CCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE------
Confidence 357777777765 89999997 788888876433 2222223334554444 44678999999988654332
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
+.-.. ....+++||+.|..+..+..|+++|..|.+.++++.-.. .|+.
T Consensus 123 --------i~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~--------------------~g~~- 170 (262)
T 3nol_A 123 --------FNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA--------------------HGEE- 170 (262)
T ss_dssp --------EECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE--------------------TTEE-
T ss_pred --------EECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc--------------------CCcc-
Confidence 33211 113344678777666667889999999999988773100 0110
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecC-CCeEEEEcccCeEEEeeccc
Q 011436 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~i~v~d~~tg~~v~~~~~~ 231 (485)
....+.+.|. +|+..+..-. +.|.++|..||+++.++...
T Consensus 171 ----------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 171 ----------LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp ----------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred ----------ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence 0011346676 6764444433 45999999999999988654
No 275
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.76 E-value=0.00045 Score=64.88 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=77.9
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
.++.+..-.++.+.+||.+ +.+.+.+++.-..+ ..+++|++.|+.++.++.|.++|+++++..+..-
T Consensus 97 ~~ly~ltw~~~~v~v~D~~--t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~-------- 163 (262)
T 3nol_A 97 DKIVGLTWKNGLGFVWNIR--NLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTIT-------- 163 (262)
T ss_dssp TEEEEEESSSSEEEEEETT--TCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEE--------
T ss_pred CEEEEEEeeCCEEEEEECc--cCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEE--------
Confidence 3555666678999999997 78888888743222 3344677766666667889999999866543300
Q ss_pred ceEEeecCC-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011436 105 NLFEILKSK-TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 105 ~l~~~~~~~-~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
+. ..+.. ..++.+.|. +|+.+|....+..|.+.|.++|+++.+++-
T Consensus 164 -V~-~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 164 -VT-AHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp -CE-ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred -ec-cCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 00 00111 224556776 888777777788999999999999998854
No 276
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.71 E-value=0.00079 Score=63.28 Aligned_cols=111 Identities=8% Similarity=0.056 Sum_probs=79.5
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
.++.+..-.++.+.+||.+ +.+.+.+++.-..+ .. +++|++.|..++.++.|.++|+++++..+..
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~--Tl~~~~ti~~~~eG-wG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I--------- 171 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGM--PPQRERTTRYSGEG-WG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAV--------- 171 (268)
T ss_dssp SCEEEEESSSCEEEEEETT--TTEEEEEEECSSCC-CC--EEEETTEEEEECSSSEEEEECTTTCCEEEEE---------
T ss_pred CEEEEEEccCCEEEEEECC--cCcEEEEEeCCCce-eE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEE---------
Confidence 3555556678999999997 88889888743222 23 3467887777777899999999987654330
Q ss_pred ceEEeecCC---ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011436 105 NLFEILKSK---TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 105 ~l~~~~~~~---~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
. ...+. ..++.+.|. +|+.+|....+..|.+.|.++|+++..++-
T Consensus 172 --~-V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 172 --Q-VKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp --E-CEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred --E-eCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence 0 11111 235667777 888777776788999999999999999864
No 277
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.63 E-value=0.0015 Score=60.65 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=77.6
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
.++.+..-.++.+.+||.+ +.+.+.+++.-..+ ..| .+|++.|..++.++.|.++|+++++..+.. .
T Consensus 75 ~~ly~ltw~~~~v~v~D~~--tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I---~----- 141 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLA--TLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSI---K----- 141 (243)
T ss_dssp TEEEEEESSSSEEEEEETT--TTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEE---E-----
T ss_pred CEEEEEEeeCCEEEEEECC--cCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEE---E-----
Confidence 4555666678999999997 88889988743333 233 456776666667889999999986644320 0
Q ss_pred ceEEeecCC---ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011436 105 NLFEILKSK---TTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 105 ~l~~~~~~~---~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
...+. ..++.+.+. +|+.+|....+..|.+.|.++|+++..++-
T Consensus 142 ----V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 142 ----VTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp ----CEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred ----EccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 00111 234556665 788777776788999999999999998854
No 278
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.62 E-value=0.0013 Score=66.64 Aligned_cols=173 Identities=14% Similarity=0.154 Sum_probs=102.8
Q ss_pred CCCcceEEEEeCCC------CeEEEEEcCCCCCcceEEEec--CCCCe-EEEEEcCCCCEEEEEe---------------
Q 011436 21 GDVKAGLAISDRNS------SFVHIYDARADSNEPLISKKV--HMGPV-KVMRYNPVFDTVISAD--------------- 76 (485)
Q Consensus 21 ~~~~~~l~vs~s~d------~~I~iwd~~~~~~~~~~~l~~--h~~~V-~~l~fspd~~~l~s~s--------------- 76 (485)
..|++ +++++..+ +.|.++|.+ +.+.+.+++. +...+ ..+.|+|+++.++|..
T Consensus 145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~--T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~ 221 (462)
T 2ece_A 145 CGPDA-IYISALGNEEGEGPGGILMLDHY--SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH 221 (462)
T ss_dssp ECSSC-EEEEEEEETTSCSCCEEEEECTT--TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred ECCCe-EEEEcCCCcCCCCCCeEEEEECC--CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence 35677 77776555 789999987 7888888862 22222 2477899999999886
Q ss_pred ----CCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecC--CccEEEEEE--cCCCCEEEEEe------CCCcEEEEEC
Q 011436 77 ----DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS--KTTVSAIEV--SPDGKQFSITS------PDRRIRVFWF 142 (485)
Q Consensus 77 ----~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~--~~~v~~i~~--spdg~~lat~s------~D~~I~iwd~ 142 (485)
.+..|.+||..+++. +..+.-. ......+.| +|+|+++.+++ .+++|.+|..
T Consensus 222 ~~~~~~d~V~v~D~~~~k~--------------~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 222 LKDRYGNRIHFWDLRKRKR--------------IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp HHHHSCCEEEEEETTTTEE--------------EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred hhhccCCEEEEEECCCCcE--------------eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 368999999876432 2223221 123456656 99999887777 4568888877
Q ss_pred CCCcE--EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC--CeEEEE
Q 011436 143 RTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIVN 218 (485)
Q Consensus 143 ~tg~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~--~i~v~d 218 (485)
..|+. +++++-....+. . .+... ...... .......|.+|+||+||-++... .|.++|
T Consensus 288 d~g~~~~~~vIdi~~~~v~-----~----~lp~~--------~~~f~~-~~~~pa~I~lS~DGrfLYVSnrg~d~Vavfd 349 (462)
T 2ece_A 288 EDGKWNAEKVIEIPAEPLE-----G----NLPEI--------LKPFKA-VPPLVTDIDISLDDKFLYLSLWGIGEVRQYD 349 (462)
T ss_dssp ETTEEEEEEEEEECCEECC-----S----SCCGG--------GGGGTE-ECCCCCCEEECTTSCEEEEEETTTTEEEEEE
T ss_pred cCCceeEEEEEeCCCcccc-----c----ccccc--------cccccc-CCCceeEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 65542 112110000000 0 00000 000000 01224689999999998887763 499999
Q ss_pred cc---cCeEEEee
Q 011436 219 LH---TNKVSRIL 228 (485)
Q Consensus 219 ~~---tg~~v~~~ 228 (485)
+. +.+++..+
T Consensus 350 V~d~~~~~lv~~I 362 (462)
T 2ece_A 350 ISNPFKPVLTGKV 362 (462)
T ss_dssp CSSTTSCEEEEEE
T ss_pred ecCCCCcEEEEEE
Confidence 85 23454433
No 279
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.61 E-value=0.0034 Score=60.18 Aligned_cols=144 Identities=8% Similarity=0.002 Sum_probs=91.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
++.+.+ ++.++.+..||.. ++.......+...+.++...+++.++ .++.++.|..+|.. ++. .|.
T Consensus 107 ~~~l~v-~t~~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~~~~g~l~-vgt~~~~l~~~d~~-g~~-----~~~---- 171 (330)
T 3hxj_A 107 EDILYV-TSMDGHLYAINTD---GTEKWRFKTKKAIYATPIVSEDGTIY-VGSNDNYLYAINPD-GTE-----KWR---- 171 (330)
T ss_dssp TTEEEE-ECTTSEEEEECTT---SCEEEEEECSSCCCSCCEECTTSCEE-EECTTSEEEEECTT-SCE-----EEE----
T ss_pred CCEEEE-EecCCEEEEEcCC---CCEEEEEcCCCceeeeeEEcCCCEEE-EEcCCCEEEEECCC-CCE-----eEE----
Confidence 344444 4457888888874 45566666555566677777777744 46677888888876 332 122
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhh
Q 011436 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVE 183 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~ 183 (485)
+......+.++.+.++|..++.. +.|..|| .+|+.+..+...
T Consensus 172 -----~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~----------------------------- 213 (330)
T 3hxj_A 172 -----FKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAG----------------------------- 213 (330)
T ss_dssp -----EECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCS-----------------------------
T ss_pred -----EecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccC-----------------------------
Confidence 22223446667788888866543 8899999 788877665320
Q ss_pred HhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEee
Q 011436 184 KEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRIL 228 (485)
Q Consensus 184 ~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~ 228 (485)
...+.++..+++|++.+.....++..+|. +|+.+..+
T Consensus 214 -------~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~ 250 (330)
T 3hxj_A 214 -------YWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRF 250 (330)
T ss_dssp -------SCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEE
T ss_pred -------CcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEe
Confidence 01235778898988666555566888874 56655444
No 280
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.60 E-value=0.0031 Score=67.88 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=76.6
Q ss_pred cceEEEEeCC-----CCeEEEEEcCCCCCcceEEEecC--C-----------------------------CCeEEEEEcC
Q 011436 24 KAGLAISDRN-----SSFVHIYDARADSNEPLISKKVH--M-----------------------------GPVKVMRYNP 67 (485)
Q Consensus 24 ~~~l~vs~s~-----d~~I~iwd~~~~~~~~~~~l~~h--~-----------------------------~~V~~l~fsp 67 (485)
++.+++..+. ++.|+.||.+ +++.+.++... . .....+++.|
T Consensus 162 ~~~v~vg~~~~~~~~~g~v~a~D~~--tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~ 239 (668)
T 1kv9_A 162 KGKVIIGNGGAEYGVRGFVSAYDAD--TGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP 239 (668)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETT--TCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET
T ss_pred CCEEEEeCCCCCcCCCCEEEEEECC--CCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC
Confidence 4555555432 5899999997 78888877521 0 0112478889
Q ss_pred CCCEEEEEeCCCc-------------------EEEEcCCCCCCCCceeEEEEcCC-CceEEeecCCccEEEEEEcCCCC-
Q 011436 68 VFDTVISADDKGI-------------------IEYWSPHTLQFPESEVSFRLKSD-TNLFEILKSKTTVSAIEVSPDGK- 126 (485)
Q Consensus 68 d~~~l~s~s~dg~-------------------i~~Wd~~t~~~~~~~~~~~~~~~-~~l~~~~~~~~~v~~i~~spdg~- 126 (485)
+..++..++.++. |..+|..|++. .|.++.. .+...+.. ..++....+..||+
T Consensus 240 ~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~-----~W~~~~~~~~~wd~~~-~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 240 ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL-----AWHYQVTPGDSWDFTA-TQQITLAELNIDGKP 313 (668)
T ss_dssp TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-----EEEEESSTTCCSCCCC-CSCEEEEEEEETTEE
T ss_pred CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce-----eeEeecCCCccccccC-CCCcEEEEeccCCcE
Confidence 8888888776653 77788877652 3544322 11111111 12233333444776
Q ss_pred --EEEEEeCCCcEEEEECCCCcEEEEec
Q 011436 127 --QFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 127 --~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
.++.++.++.++++|..+|+++..+.
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEECCCCEEEEEECCCCCEecccc
Confidence 68888999999999999999986653
No 281
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.56 E-value=0.011 Score=54.71 Aligned_cols=155 Identities=13% Similarity=-0.052 Sum_probs=96.9
Q ss_pred ceEEEEeCCC--CeEEEEEcCCCCCcceEEEecCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 25 AGLAISDRNS--SFVHIYDARADSNEPLISKKVHMGP-VKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 25 ~~l~vs~s~d--~~I~iwd~~~~~~~~~~~l~~h~~~-V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+.+..|.+.+ ..|+.+|+. +++.++++...... -..+++.. +++.+..-.++.+.++|.++++....
T Consensus 31 ~~LyestG~~g~S~v~~vD~~--tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~t------- 100 (243)
T 3mbr_X 31 GHLYESTGETGRSSVRKVDLE--TGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRAR------- 100 (243)
T ss_dssp TEEEEEECCTTSCEEEEEETT--TCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEE-------
T ss_pred CEEEEECCCCCCceEEEEECC--CCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEE-------
Confidence 5777777765 489999998 78888877633221 12344432 33444455788999999988554332
Q ss_pred CCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 102 SDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
+.-... -..+ ++||+.|..+..+..|.++|..|.+.++++.-.. . |+
T Consensus 101 -------i~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~--------~------------g~--- 147 (243)
T 3mbr_X 101 -------FRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA--------G------------GR--- 147 (243)
T ss_dssp -------EECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEE--------T------------TE---
T ss_pred -------EeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc--------C------------Cc---
Confidence 332111 1333 4577766666678899999999999988773200 0 00
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEec-CCCeEEEEcccCeEEEeeccc
Q 011436 182 VEKEIEKTETAPPSNAIFDESSNFLIYAT-LLGIKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~s-~~~i~v~d~~tg~~v~~~~~~ 231 (485)
.....+.+.|. +|+..+..- .+.|.++|..+|+++..+.-.
T Consensus 148 --------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 148 --------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp --------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECG
T ss_pred --------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECC
Confidence 00112345565 677554442 346999999999999888543
No 282
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.56 E-value=0.0069 Score=59.23 Aligned_cols=199 Identities=14% Similarity=0.166 Sum_probs=115.4
Q ss_pred EEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCC----C---EEEEEe-C--CCcEEE
Q 011436 14 VEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVF----D---TVISAD-D--KGIIEY 83 (485)
Q Consensus 14 ~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~----~---~l~s~s-~--dg~i~~ 83 (485)
.-|++.. +|...++++...++-+.+||+ .++.++.+.. +.++.|..-|+. + +++... . +..|++
T Consensus 30 avw~~~~-dp~~s~ii~t~k~~gL~Vydl---~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~v 103 (355)
T 3amr_A 30 AIWLDPK-TPQNSKLITTNKKSGLVVYSL---DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEI 103 (355)
T ss_dssp EEECCSS-CGGGCEEEEEETTTEEEEEET---TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEE
T ss_pred cEecCCC-CCCccEEEEEcCCCCEEEEcC---CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEE
Confidence 5688664 344444555556788999999 4778888864 456777666643 2 333333 4 578999
Q ss_pred E--cCCCCCCCCceeEEEEcCCCceEEee-------cCCccEEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------
Q 011436 84 W--SPHTLQFPESEVSFRLKSDTNLFEIL-------KSKTTVSAIEV--SPD-GK-QFSITSPDRRIRVFWFR------- 143 (485)
Q Consensus 84 W--d~~t~~~~~~~~~~~~~~~~~l~~~~-------~~~~~v~~i~~--spd-g~-~lat~s~D~~I~iwd~~------- 143 (485)
+ |..+.+ +..+. ..-..+..+|+ +|+ |+ ++.+...++.+..|++.
T Consensus 104 f~iDp~~~~---------------l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~ 168 (355)
T 3amr_A 104 YAIDGKNGT---------------LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI 168 (355)
T ss_dssp EEECTTTCC---------------EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred EEECCCCCc---------------eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence 9 444422 21121 11134666777 884 54 56666788999999882
Q ss_pred CCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCC-CeEEEEcc--
Q 011436 144 TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLL-GIKIVNLH-- 220 (485)
Q Consensus 144 tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-~i~v~d~~-- 220 (485)
++++++++.- + ...-.++.|+...+|.++-.+ +|-.++..
T Consensus 169 ~~~lVR~f~l-----------------------g--------------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~ 211 (355)
T 3amr_A 169 SGKKVRAFKM-----------------------N--------------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPD 211 (355)
T ss_dssp EEEEEEEEEC-----------------------S--------------SCEEEEEEETTTTEEEEEETTTEEEEEECSTT
T ss_pred cceEEEEecC-----------------------C--------------CCcceEEEcCCCCeEEEecccceEEEEeCCcC
Confidence 3455666522 0 012377888877777777765 45555644
Q ss_pred ---cCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCC
Q 011436 221 ---TNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREP 292 (485)
Q Consensus 221 ---tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~ 292 (485)
+++++..++...-....=-+++|.. ....+.||+|.=+++++-+|.++.+
T Consensus 212 ~~~~~~~v~~~~~g~l~aDvEGLai~~~----------------------~~g~gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 212 GGSNGTVIDRADGRHLTRDIEGLTIYYA----------------------ADGKGYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp SCSCCEEEEEBSSSSBCSCEEEEEEEEC----------------------GGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CCCCceEEEEecCCccccCcceEEEEec----------------------CCCCEEEEEEcCCCCEEEEEECCCC
Confidence 4556655532110000011223321 0123468888889999999988643
No 283
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.52 E-value=0.021 Score=56.09 Aligned_cols=146 Identities=12% Similarity=0.154 Sum_probs=89.6
Q ss_pred EEEeCCCCeEEEEEcCCCCCcceEEEecCCCC-------eEEEEEcC--CCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 28 AISDRNSSFVHIYDARADSNEPLISKKVHMGP-------VKVMRYNP--VFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 28 ~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~-------V~~l~fsp--d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
++.+..++.+..+|.. +++.+......... +..+.-.| .+..+..++.++.+..+|.++++. .|
T Consensus 191 v~~g~~~g~l~~~d~~--tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~-----~w 263 (376)
T 3q7m_A 191 AVVGGDNGRVSAVLME--QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI-----MW 263 (376)
T ss_dssp EEECCTTTEEEEEETT--TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE-----EE
T ss_pred EEEEcCCCEEEEEECC--CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE-----Ee
Confidence 4445578899999987 67777666522100 00011111 246677778899999999887542 23
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
.... ....++.. ++..+..++.++.+..+|..+|+.++..+...
T Consensus 264 ~~~~-----------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~----------------------- 307 (376)
T 3q7m_A 264 KREL-----------GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL----------------------- 307 (376)
T ss_dssp EECC-----------CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT-----------------------
T ss_pred eccC-----------CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC-----------------------
Confidence 2221 11333333 46677778889999999999999887763100
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecc
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 230 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~ 230 (485)
.....+... .+..|..++.++ +.++|..+|+++..+..
T Consensus 308 ------------~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 308 ------------HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp ------------TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ------------CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 000112222 245667777776 99999999998866543
No 284
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.42 E-value=0.0027 Score=66.45 Aligned_cols=110 Identities=10% Similarity=-0.034 Sum_probs=63.9
Q ss_pred CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEcCCC-------CC
Q 011436 33 NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG---------------IIEYWSPHT-------LQ 90 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg---------------~i~~Wd~~t-------~~ 90 (485)
.++.+-+.|.. +.+.+.++.--. .-..++++|||+++.+++.+. .|.+.|... ++
T Consensus 173 ~~~~vtvID~~--t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 173 YVNVFTAVDAD--KWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EEEEEEEEETT--TTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred cCceEEEEECC--CCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 35689999987 677777776212 236678999999988888553 123322111 00
Q ss_pred C--CCceeEEEEcC--CCc-eEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc
Q 011436 91 F--PESEVSFRLKS--DTN-LFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFRTGK 146 (485)
Q Consensus 91 ~--~~~~~~~~~~~--~~~-l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~tg~ 146 (485)
. ....-+.+.+. +.. +..+.-. ....++.+||||+++.+++ .+.+|.++|+.+.+
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred eeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 0 00011122222 111 1222211 2356789999999887776 58899999998643
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.41 E-value=0.037 Score=51.80 Aligned_cols=208 Identities=13% Similarity=0.110 Sum_probs=110.0
Q ss_pred ceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC
Q 011436 25 AGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD 103 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~ 103 (485)
+.+.+....++.|...|.. ++.++++. +-......|++.+++.++++.-.++.+.+.++.........-...+
T Consensus 39 ~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~--- 112 (255)
T 3qqz_A 39 NTLFSTINKPAAIVEMTTN---GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKI--- 112 (255)
T ss_dssp TEEEEEEETTEEEEEEETT---CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEEC---
T ss_pred CEEEEEECCCCeEEEEeCC---CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecc---
Confidence 4455444457888888874 66777764 2225678889999998878766777777775543211000000000
Q ss_pred CceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 104 TNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR---TGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 104 ~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~---tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
.+.. .........++|+|+++.|.++.......||.+. .++.+..++... +.
T Consensus 113 -~~~~-~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~--~~--------------------- 167 (255)
T 3qqz_A 113 -PLQE-SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA--LQ--------------------- 167 (255)
T ss_dssp -CCSS-CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH--HH---------------------
T ss_pred -cccc-ccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchh--hc---------------------
Confidence 0000 1223447899999999877777765555555543 111111111100 00
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCC--eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeecc
Q 011436 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLG--IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAA 258 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~--i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~ 258 (485)
. ........+++|||.-..|..-|... +-++|.. |+++..+.-..+ .. .+....+..+++.-
T Consensus 168 ---~---~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g-~~----~l~~~~~qpEGia~---- 231 (255)
T 3qqz_A 168 ---R---QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKG-SR----GLSHNIKQAEGVAM---- 231 (255)
T ss_dssp ---H---TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTT-GG----GCSSCCCSEEEEEE----
T ss_pred ---c---ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCc-cC----CcccccCCCCeeEE----
Confidence 0 00111247999998877666666543 5666643 555544422110 00 00001122223221
Q ss_pred ccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 259 AANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 259 ~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.+++.++++ ++-+.||.|.+.
T Consensus 232 ----------d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 232 ----------DASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp ----------CTTCCEEEE-ETTTEEEEEEC-
T ss_pred ----------CCCCCEEEE-cCCceEEEEEec
Confidence 277887777 788999999774
No 286
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.40 E-value=0.018 Score=56.61 Aligned_cols=151 Identities=9% Similarity=0.033 Sum_probs=91.0
Q ss_pred EEEeCCCCeEEEEEcCCCCCcceEEEecC---------CCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEE
Q 011436 28 AISDRNSSFVHIYDARADSNEPLISKKVH---------MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 28 ~vs~s~d~~I~iwd~~~~~~~~~~~l~~h---------~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
+..++.++.|..||.+ +++.+.+.... ...+.+. ...++..+..++.++.|..+|.++++. .|
T Consensus 56 v~~~~~~g~v~a~d~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~-----~W 127 (376)
T 3q7m_A 56 VYAADRAGLVKALNAD--DGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTV-----AW 127 (376)
T ss_dssp EEEECTTSEEEEEETT--TCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCE-----EE
T ss_pred EEEEcCCCeEEEEEcc--CCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCE-----EE
Confidence 3344467899999997 77777766542 1233222 222456777788899999999988653 34
Q ss_pred EEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 99 RLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
+....... ...++ . .+..+..++.++.|..+|..+|+.++.++....... .
T Consensus 128 ~~~~~~~~-----~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~-----------~------- 178 (376)
T 3q7m_A 128 QTKVAGEA-----LSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS-----------L------- 178 (376)
T ss_dssp EEECSSCC-----CSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------------------
T ss_pred EEeCCCce-----EcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-----------e-------
Confidence 43322111 11111 2 144777788999999999999999888743211100 0
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecc
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 230 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~ 230 (485)
....+...+ +..|+.++.++ +..+|..+|+++.....
T Consensus 179 -------------~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 179 -------------RGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp -------------CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred -------------cCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 000122222 34566666665 99999999998866543
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.33 E-value=0.0045 Score=67.53 Aligned_cols=108 Identities=10% Similarity=0.035 Sum_probs=63.2
Q ss_pred CC-CcceEEE-EeCCC----CeEEEEEcCCCCC-cce-EEEecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEcCC
Q 011436 21 GD-VKAGLAI-SDRNS----SFVHIYDARADSN-EPL-ISKKVHMGPVKVMRYNPVFDTVISADDKG-----IIEYWSPH 87 (485)
Q Consensus 21 ~~-~~~~l~v-s~s~d----~~I~iwd~~~~~~-~~~-~~l~~h~~~V~~l~fspd~~~l~s~s~dg-----~i~~Wd~~ 87 (485)
.| |++..++ +.+.+ .+|+++|+. ++ +.+ ..+.. ....++|+||++.|+-.+.|. .|.+|++.
T Consensus 181 ~S~PDG~~lAy~~~~~G~~~~~l~v~dl~--~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lg 255 (751)
T 2xe4_A 181 PAPPEHDLVAFSVDMSGNEVYTIEFKRIS--DPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMG 255 (751)
T ss_dssp ECTTTTCEEEEEEESSSSSCEEEEEEETT--CTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEETT
T ss_pred ecCCCCCEEEEEEeCCCCceEEEEEEECC--CCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEECC
Confidence 36 6766444 43332 359999997 44 321 11221 134678999998777666542 45555665
Q ss_pred CCCCCCceeEEEEcCCCceEEee-cCCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCC
Q 011436 88 TLQFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSP---DRRIRVFWFRTG 145 (485)
Q Consensus 88 t~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~s~---D~~I~iwd~~tg 145 (485)
+.+. .+...+. .......++.|||||++|+..+. ...|+++|+.++
T Consensus 256 t~~~------------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 256 KLQS------------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp SCGG------------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CCch------------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 4221 1112222 22234678899999999887663 346777887765
No 288
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.32 E-value=0.0099 Score=62.66 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=72.9
Q ss_pred cceEEEEeCC-----CCeEEEEEcCCCCCcceEEEecCCCC--------------------------------------e
Q 011436 24 KAGLAISDRN-----SSFVHIYDARADSNEPLISKKVHMGP--------------------------------------V 60 (485)
Q Consensus 24 ~~~l~vs~s~-----d~~I~iwd~~~~~~~~~~~l~~h~~~--------------------------------------V 60 (485)
++.++++.+. ++.|+.+|.+ +++.+.++...... .
T Consensus 160 ~g~v~vg~~~~~~~~~g~v~a~D~~--tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w 237 (571)
T 2ad6_A 160 KDTVLMGCSGAELGVRGAVNAFDLK--TGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNW 237 (571)
T ss_dssp TTEEEEECBCGGGTCCCEEEEEETT--TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCC
T ss_pred CCEEEEEecCCccCCCCEEEEEECC--CCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCee
Confidence 4566665543 7899999997 78888776532110 0
Q ss_pred EEEEEcCCCCEEEEEeCC----------------CcEEEEcCCCCCCCCceeEEEEcCCC-ceEEeecCCccEEEEEEcC
Q 011436 61 KVMRYNPVFDTVISADDK----------------GIIEYWSPHTLQFPESEVSFRLKSDT-NLFEILKSKTTVSAIEVSP 123 (485)
Q Consensus 61 ~~l~fspd~~~l~s~s~d----------------g~i~~Wd~~t~~~~~~~~~~~~~~~~-~l~~~~~~~~~v~~i~~sp 123 (485)
..+++.++..++..+..+ +.|..+|.++++. .|.++... +...+.....++. +...+
T Consensus 238 ~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~-----~W~~~~~~~d~~d~~~~~~p~l-~~~~~ 311 (571)
T 2ad6_A 238 GWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA-----KWGYQKTPHDEWDFAGVNQMVL-TDQPV 311 (571)
T ss_dssp SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE-----EEEEESSTTCSSCCCCCCCCEE-EEEEE
T ss_pred eeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE-----EEEecCCCCcccccccCCCCEE-Eeccc
Confidence 235677766666555432 2477778777552 34443221 1111111223332 33345
Q ss_pred CCC---EEEEEeCCCcEEEEECCCCcEEEEec
Q 011436 124 DGK---QFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 124 dg~---~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
||+ .++.++.++.+.++|..+|+.+..+.
T Consensus 312 ~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 312 NGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp TTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 885 56788899999999999999988764
No 289
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.22 E-value=0.018 Score=60.99 Aligned_cols=121 Identities=13% Similarity=0.126 Sum_probs=74.1
Q ss_pred cceEEEEeC-----CCCeEEEEEcCCCCCcceEEEecCCCC-------------------------------------e-
Q 011436 24 KAGLAISDR-----NSSFVHIYDARADSNEPLISKKVHMGP-------------------------------------V- 60 (485)
Q Consensus 24 ~~~l~vs~s-----~d~~I~iwd~~~~~~~~~~~l~~h~~~-------------------------------------V- 60 (485)
++.+++.++ .++.|+-+|.+ +++.+.++...... +
T Consensus 166 ~g~V~vg~~g~e~g~~g~v~A~D~~--TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W 243 (599)
T 1w6s_A 166 KDKVIIGSSGAELGVRGYLTAYDVK--TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNW 243 (599)
T ss_dssp TTEEEECCBCGGGTCCCEEEEEETT--TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCC
T ss_pred CCEEEEEecccccCCCCeEEEEECC--CCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccc
Confidence 355555543 37899999997 78888777632111 1
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------cEEEEcCCCCCCCCceeEEEEcCCC-ceEEeecCCccEEEEEEc-
Q 011436 61 KVMRYNPVFDTVISADDKG----------------IIEYWSPHTLQFPESEVSFRLKSDT-NLFEILKSKTTVSAIEVS- 122 (485)
Q Consensus 61 ~~l~fspd~~~l~s~s~dg----------------~i~~Wd~~t~~~~~~~~~~~~~~~~-~l~~~~~~~~~v~~i~~s- 122 (485)
...++.++..++..+..++ .|..+|++|++. .|.++... +...+.....++. +...
T Consensus 244 ~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~-----~W~~q~~~~d~wd~d~~~~p~l-~d~~~ 317 (599)
T 1w6s_A 244 GWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA-----KFGYQKTPHDEWDYAGVNVMML-SEQKD 317 (599)
T ss_dssp SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE-----EEEEESSTTCSSCCCCCCCCEE-EEEEC
T ss_pred cceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce-----eeEeecCCCccccccCCCccEE-Eeccc
Confidence 1356667777777666543 666777777542 34443211 1111222222232 2333
Q ss_pred CCC---CEEEEEeCCCcEEEEECCCCcEEEEec
Q 011436 123 PDG---KQFSITSPDRRIRVFWFRTGKLRRVYD 152 (485)
Q Consensus 123 pdg---~~lat~s~D~~I~iwd~~tg~~~~~~~ 152 (485)
.+| ..++.++.++.+.++|.++|+.+....
T Consensus 318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 678 467778899999999999999988764
No 290
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.20 E-value=0.041 Score=51.22 Aligned_cols=150 Identities=11% Similarity=-0.001 Sum_probs=89.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEcCCCCCCCCceeEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADD---KGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~---dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
.+.+.++....+.|.++|.. +.....+. ........++++|++..|..++. .+.|..+++.. .
T Consensus 90 ~~~lyv~d~~~~~I~~~~~~---g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~--------- 156 (267)
T 1npe_A 90 GRTIFWTDSQLDRIEVAKMD---GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-T--------- 156 (267)
T ss_dssp TTEEEEEETTTTEEEEEETT---SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-C---------
T ss_pred CCeEEEEECCCCEEEEEEcC---CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-C---------
Confidence 45677777777889999885 22223332 22245689999997665544443 35776666532 1
Q ss_pred EcCCCceEEee-cCCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011436 100 LKSDTNLFEIL-KSKTTVSAIEVSPDGKQF-SITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 100 ~~~~~~l~~~~-~~~~~v~~i~~spdg~~l-at~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
....+. ..-.....++++|++.+| ++-...+.|.++|+..+.....++.
T Consensus 157 -----~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------------------------ 207 (267)
T 1npe_A 157 -----NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------------------------ 207 (267)
T ss_dssp -----CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------------------------
T ss_pred -----CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC------------------------
Confidence 111121 222457899999987665 4444578999999875443222210
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccCeEEEeecc
Q 011436 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg~~v~~~~~ 230 (485)
.. ....++.+ +.+|..+.. ..|.++|..+|+.++++.-
T Consensus 208 ------------~~-~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 208 ------------LQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp ------------CC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred ------------CC-CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 00 01356665 344444443 3499999999999888753
No 291
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.16 E-value=0.0024 Score=69.75 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=72.1
Q ss_pred CeEEEEEc-CCCCEEEE-EeCCC----cEEEEcCCCC-CCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEE
Q 011436 59 PVKVMRYN-PVFDTVIS-ADDKG----IIEYWSPHTL-QFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT 131 (485)
Q Consensus 59 ~V~~l~fs-pd~~~l~s-~s~dg----~i~~Wd~~t~-~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~ 131 (485)
.+...+|| |||++||- .+.+| .|.++|+.++ +.... . +.. ...+++|||||+.|+..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~----------~---~~~---~~~~~~WspDg~~l~y~ 238 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD----------K---VSG---TNGEIVWGPDHTSLFYV 238 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC----------C---EEE---ECSCCEECSSTTEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc----------c---ccC---ceeeEEEecCCCEEEEE
Confidence 67889999 99997763 34333 4888899886 42211 0 111 12467899999988887
Q ss_pred eCC-----CcEEEEECCCCcE--EEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCC
Q 011436 132 SPD-----RRIRVFWFRTGKL--RRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSN 204 (485)
Q Consensus 132 s~D-----~~I~iwd~~tg~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~ 204 (485)
+.| ..|+++++.+++. ...+.+ .......++.|||||+
T Consensus 239 ~~d~~~~~~~v~~~~lgt~~~~~~lv~~~-----------------------------------~~~~~~~~~~~SpDg~ 283 (751)
T 2xe4_A 239 TKDETLRENKVWRHVMGKLQSEDVCLYEE-----------------------------------HNPLFSAFMYKAADTN 283 (751)
T ss_dssp EECTTCCEEEEEEEETTSCGGGCEEEEEC-----------------------------------CCTTCEEEEEECTTSS
T ss_pred EECCCCCCCEEEEEECCCCchhcEEEEec-----------------------------------CCCceEEEEEECCCCC
Confidence 765 2577777766541 112211 0011124678999999
Q ss_pred EEEEecCC----CeEEEEcccC
Q 011436 205 FLIYATLL----GIKIVNLHTN 222 (485)
Q Consensus 205 ~l~~~s~~----~i~v~d~~tg 222 (485)
+|++.+.. .|.++|+.++
T Consensus 284 ~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 284 TLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEEecCCCCceEEEEECCCC
Confidence 99987632 3788888875
No 292
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.15 E-value=0.088 Score=50.49 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=90.3
Q ss_pred CCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEec--------------------CCCCeEEEEEcC-C
Q 011436 10 IPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV--------------------HMGPVKVMRYNP-V 68 (485)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~--------------------h~~~V~~l~fsp-d 68 (485)
.|..++| ++++.++.++..++.|..||.. +.. +..+.. ....+..+++.+ +
T Consensus 20 ~p~~i~~-----d~~g~~l~v~~~~~~i~~~~~~--~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 20 APNSFTF-----DSTNKGFYTSVQDGRVIKYEGP--NSG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp CCCCEEC-----CTTCSSEEEECTTSEEEEECCT--TTC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred CceEEEE-----cCCCCEEEEEcCCCeEEEECCC--CCc-eEEEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 4555554 3456655566678899999875 322 333321 013578999998 5
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeec-CCccEEEEEEcC-CCCEEEEEeC-------------
Q 011436 69 FDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSP-DGKQFSITSP------------- 133 (485)
Q Consensus 69 ~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~i~~sp-dg~~lat~s~------------- 133 (485)
+++++ ++..+.|..+|..+++... + . . ...+ ....+..+++.| +|+.+++-..
T Consensus 92 g~l~v-~d~~~~i~~~d~~~g~~~~----~--~-~----~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 92 NQLYI-VDCYYHLSVVGSEGGHATQ----L--A-T----SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp TEEEE-EETTTEEEEECTTCEECEE----E--E-S----EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CcEEE-EECCCCEEEEeCCCCEEEE----e--c-c----cCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 65544 4444557778876432100 0 0 0 0000 112478899999 9988776533
Q ss_pred ----CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEe
Q 011436 134 ----DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYA 209 (485)
Q Consensus 134 ----D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~ 209 (485)
++.|..||..+++......+ ......|+|+|+|++|..+
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~-------------------------------------~~~p~gia~~~dg~~lyv~ 202 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKE-------------------------------------LHVPGGAEVSADSSFVLVA 202 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEE-------------------------------------ESCCCEEEECTTSSEEEEE
T ss_pred ccCCCceEEEEeCCCCEEEEeccC-------------------------------------CccCcceEECCCCCEEEEE
Confidence 35688888777764322110 0012478999999966555
Q ss_pred -cC-CCeEEEEccc
Q 011436 210 -TL-LGIKIVNLHT 221 (485)
Q Consensus 210 -s~-~~i~v~d~~t 221 (485)
+. ..|.++++.+
T Consensus 203 d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 203 EFLSHQIVKYWLEG 216 (322)
T ss_dssp EGGGTEEEEEESSS
T ss_pred eCCCCeEEEEECCC
Confidence 33 4588888864
No 293
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.11 E-value=0.043 Score=57.85 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=42.8
Q ss_pred CcEEEEcCCCCCCCCceeEEEEcCC-CceEEeecCCccEEEEEEc-CCCC---EEEEEeCCCcEEEEECCCCcEEEEecc
Q 011436 79 GIIEYWSPHTLQFPESEVSFRLKSD-TNLFEILKSKTTVSAIEVS-PDGK---QFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 79 g~i~~Wd~~t~~~~~~~~~~~~~~~-~~l~~~~~~~~~v~~i~~s-pdg~---~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
+.|..+|+.|++. .|.++.. .+...+.....++. +... .+|+ .++.++.++.++++|.++|+.+..+..
T Consensus 291 ~~v~AlD~~TG~~-----~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 291 SGQVGVDPSSGEV-----KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp SEEEEECTTTCCE-----EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ceEEEEeCCCCCE-----EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 5677788877652 3544321 11112222222332 2332 5785 678889999999999999999987743
No 294
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.09 E-value=0.2 Score=48.07 Aligned_cols=191 Identities=9% Similarity=0.014 Sum_probs=103.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC--CcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~--~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.+.+.++....+.|+.+|+.... ......+...-.....+++.+.+. +.++-...+.|.+.|....
T Consensus 41 ~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~----------- 109 (316)
T 1ijq_A 41 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV----------- 109 (316)
T ss_dssp TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-----------
T ss_pred CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC-----------
Confidence 45677887778899999986200 122222332334557899987555 4555566788888876531
Q ss_pred cCCCceEEe-ecCCccEEEEEEcCCCCEE-EEEeCC-CcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011436 101 KSDTNLFEI-LKSKTTVSAIEVSPDGKQF-SITSPD-RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 101 ~~~~~l~~~-~~~~~~v~~i~~spdg~~l-at~s~D-~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
....+ ...-.....++++|++.+| .+-... +.|..+++. |+..+.+-.
T Consensus 110 ----~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~------------------------ 160 (316)
T 1ijq_A 110 ----KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVT------------------------ 160 (316)
T ss_dssp ----SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEEC------------------------
T ss_pred ----ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEE------------------------
Confidence 11112 2233457899999965544 443333 677777764 333332210
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecC--CCeEEEEcccCeEEEeeccc-CCccceeeeeeccCCccCcceee
Q 011436 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLHTNKVSRILGKV-ENNDRFLRIALYQGDRSSKKVRK 254 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~tg~~v~~~~~~-~~~~r~~~~s~~~~~~~~~~~~~ 254 (485)
........+++|++++.|..+-. ..|..+|..... .+++... ..-.....+++
T Consensus 161 -----------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav------------ 216 (316)
T 1ijq_A 161 -----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV------------ 216 (316)
T ss_dssp -----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEE------------
T ss_pred -----------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEE------------
Confidence 00011258899988776655543 248888875322 2222110 00001111111
Q ss_pred eeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 255 IPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 255 ~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.+..++.+-.+.++|+.+++...+
T Consensus 217 ---------------~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 217 ---------------FEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp ---------------ETTEEEEEETTTTEEEEEETTTCC
T ss_pred ---------------ECCEEEEEECCCCeEEEEeCCCCc
Confidence 235677888888999999876544
No 295
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.99 E-value=0.28 Score=48.87 Aligned_cols=107 Identities=7% Similarity=-0.043 Sum_probs=61.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC--CcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~--~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.+.+.++....+.|+.+++.... ......+.........|++.+.+. +..+-...+.|.+.+++...
T Consensus 123 ~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~---------- 192 (400)
T 3p5b_L 123 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---------- 192 (400)
T ss_dssp TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS----------
T ss_pred cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc----------
Confidence 45677777677888888875210 122222333445678899998544 55555567788888775311
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCE-EEEEeC-CCcEEEEECCC
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQ-FSITSP-DRRIRVFWFRT 144 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~-lat~s~-D~~I~iwd~~t 144 (485)
....+...-..+..|+++|.+.+ +.+-.. ...|...++..
T Consensus 193 ----~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 193 ----RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp ----EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred ----eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 11112223345789999996544 444322 36788777753
No 296
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.98 E-value=0.0067 Score=65.26 Aligned_cols=157 Identities=7% Similarity=-0.012 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCCcceEEEec--CC-------CCeEEEEEcCCCC---EEEEEeCCCcEEEEcCCCCCCCCc----eeEEE
Q 011436 36 FVHIYDARADSNEPLISKKV--HM-------GPVKVMRYNPVFD---TVISADDKGIIEYWSPHTLQFPES----EVSFR 99 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~--h~-------~~V~~l~fspd~~---~l~s~s~dg~i~~Wd~~t~~~~~~----~~~~~ 99 (485)
.|.-+|.+ +++.+..++. |. .+.....+..+++ .++.++.+|.+.++|.+++++... .+.|.
T Consensus 271 ~v~AlD~~--tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 271 SILAIRPD--TGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp EEEEECTT--TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eEEEEcCC--CCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 48888987 7888887763 32 3333334444675 688999999999999999876411 00011
Q ss_pred E----cCCCceE------------EeecCC--ccEEEEEEcCCCCEEEEEe-----------------------------
Q 011436 100 L----KSDTNLF------------EILKSK--TTVSAIEVSPDGKQFSITS----------------------------- 132 (485)
Q Consensus 100 ~----~~~~~l~------------~~~~~~--~~v~~i~~spdg~~lat~s----------------------------- 132 (485)
. +.+.++. .+.+.. ..-..++++|+...+....
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 1 1111111 000000 0011367888766654321
Q ss_pred -------CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCE
Q 011436 133 -------PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNF 205 (485)
Q Consensus 133 -------~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~ 205 (485)
.++.|+.||+.||+.++.+.... ..........|.+
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-------------------------------------~~~~~~~~t~gg~ 471 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPT-------------------------------------HWNGGTLSTAGNL 471 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEESS-------------------------------------SCCCCEEEETTTE
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCCC-------------------------------------CCcCceeEeCCCE
Confidence 24789999999999987764210 0112234446788
Q ss_pred EEEecCCC-eEEEEcccCeEEEeeccc
Q 011436 206 LIYATLLG-IKIVNLHTNKVSRILGKV 231 (485)
Q Consensus 206 l~~~s~~~-i~v~d~~tg~~v~~~~~~ 231 (485)
|.+++.++ ++.||..+|+++..+.-.
T Consensus 472 vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 472 VFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEECCcccchhhhhhcChhheEecCC
Confidence 88888887 999999999999777543
No 297
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.97 E-value=0.053 Score=52.07 Aligned_cols=184 Identities=12% Similarity=0.081 Sum_probs=103.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEec-----CCCCeEEEEEcC-CCCEEEEEeC-----------------CCc
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKV-----HMGPVKVMRYNP-VFDTVISADD-----------------KGI 80 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~-----h~~~V~~l~fsp-d~~~l~s~s~-----------------dg~ 80 (485)
++.+.++... +.|..+|.. ++. +..+.. .......+++.| +|.+.++-.. ++.
T Consensus 91 ~g~l~v~d~~-~~i~~~d~~--~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 91 NNQLYIVDCY-YHLSVVGSE--GGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTEEEEEETT-TEEEEECTT--CEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCcEEEEECC-CCEEEEeCC--CCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 4566666543 447778864 332 233321 123467899999 8987776533 255
Q ss_pred EEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcE--EEEeccchhH
Q 011436 81 IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSIT-SPDRRIRVFWFRTGKL--RRVYDESLEV 157 (485)
Q Consensus 81 i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~-s~D~~I~iwd~~tg~~--~~~~~~~~~~ 157 (485)
|..||..+++. ..+...-.....++|+|||+.|..+ +..+.|++||+...+. .+.+..
T Consensus 167 v~~~d~~~~~~---------------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---- 227 (322)
T 2fp8_A 167 LIKYDPSTKET---------------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---- 227 (322)
T ss_dssp EEEEETTTTEE---------------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE----
T ss_pred EEEEeCCCCEE---------------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe----
Confidence 66666654221 1111111235679999999865544 5678899999875320 111100
Q ss_pred HHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecC-----------CCeEEEEcccCeEEE
Q 011436 158 AQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-----------LGIKIVNLHTNKVSR 226 (485)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-----------~~i~v~d~~tg~~v~ 226 (485)
+ . . ...+++|++|++.++... ..|.++|. .|++++
T Consensus 228 ----------------------------~--~-g--P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~ 273 (322)
T 2fp8_A 228 ----------------------------I--P-N--PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILE 273 (322)
T ss_dssp ----------------------------C--S-S--EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEE
T ss_pred ----------------------------C--C-C--CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEE
Confidence 0 0 0 247899999996666543 23667776 477776
Q ss_pred eecccCCc-cceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecC
Q 011436 227 ILGKVENN-DRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRR 290 (485)
Q Consensus 227 ~~~~~~~~-~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~ 290 (485)
.+....+. .....- .. ..+..|+++....++|..|...
T Consensus 274 ~~~~~~g~~~~~~~~------------~~--------------~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 274 VIPLPPPFAGEHFEQ------------IQ--------------EHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEECCTTTTTSCCCE------------EE--------------EETTEEEEECSSCSEEEEEEC-
T ss_pred EEECCCCCccccceE------------EE--------------EeCCEEEEeecCCCceEEEecc
Confidence 66443211 000000 00 0357888888888999999653
No 298
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.93 E-value=0.032 Score=58.99 Aligned_cols=237 Identities=12% Similarity=0.058 Sum_probs=123.3
Q ss_pred ceEEEEeCCCCeEEEEEc-CCCCCcceEEEecCCC-----------CeEEEEEcCCCCE----EEEEeCCCcEEEEcCCC
Q 011436 25 AGLAISDRNSSFVHIYDA-RADSNEPLISKKVHMG-----------PVKVMRYNPVFDT----VISADDKGIIEYWSPHT 88 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~-~~~~~~~~~~l~~h~~-----------~V~~l~fspd~~~----l~s~s~dg~i~~Wd~~t 88 (485)
+.+.+++..++.|.-+|. . +++.+.++..... ....++++|.+.. ++.++.|+.+..+|.++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~--tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDD--PGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TEEEEECSTTTCEEEEETTC--TTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEeCCC--CCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCC
Confidence 344444422778888998 7 7888877753221 0123566554444 77888899999999988
Q ss_pred CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCcEEEEeccchhHHHhhh
Q 011436 89 LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS------PDRRIRVFWFRTGKLRRVYDESLEVAQDLQ 162 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s------~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~ 162 (485)
++. .|+.+....-....-...++ + -++. +++++ .++.|+-+|.+||++++.++.........
T Consensus 141 G~~-----~W~~~~~~~~~~~~~~ssP~----v-~~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~- 208 (599)
T 1w6s_A 141 GET-----VWKVENSDIKVGSTLTIAPY----V-VKDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL- 208 (599)
T ss_dssp CCE-----EEEEECCCGGGTCBCCSCCE----E-ETTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT-
T ss_pred CCE-----EEeecCCCCCccceeecCCE----E-ECCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc-
Confidence 753 34443221000000011111 1 1454 44444 38999999999999999885432211100
Q ss_pred cCCCcccccccccccch-hhh---h-HhhhccCCCCCceEEECCCCCEEEEecCC-----------------CeEEEEcc
Q 011436 163 RSDAPLYRLEAIDFGRR-MAV---E-KEIEKTETAPPSNAIFDESSNFLIYATLL-----------------GIKIVNLH 220 (485)
Q Consensus 163 ~~~~~~~~~~~~~~g~~-~~~---~-~~i~~~~~~~~~~i~fd~~g~~l~~~s~~-----------------~i~v~d~~ 220 (485)
..+. ...+....|.+ ... . ..........+..+++|+....|..++.. .|..+|..
T Consensus 209 ~~p~--~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~ 286 (599)
T 1w6s_A 209 LASD--FNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD 286 (599)
T ss_dssp BCTT--TTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT
T ss_pred cccc--cccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC
Confidence 0000 00000000000 000 0 01111223344578899988888777643 48889999
Q ss_pred cCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCC---eEEEeeecCceEEEEecCCCCCC
Q 011436 221 TNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDP---TLLCCAFKRHRIYLFSRREPEEP 295 (485)
Q Consensus 221 tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~l~~s~~~d~~i~~f~~~~~~~~ 295 (485)
||+++..+........ -+.. ....++ .++ ...|+ .+++.+.+++.+|+++++..+..
T Consensus 287 TG~~~W~~q~~~~d~w--d~d~-----~~~p~l-~d~----------~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 287 TGEAKFGYQKTPHDEW--DYAG-----VNVMML-SEQ----------KDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp TCCEEEEEESSTTCSS--CCCC-----CCCCEE-EEE----------ECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCceeeEeecCCCccc--cccC-----CCccEE-Eec----------cccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 9998866643220000 0000 000010 000 00234 56778889999999999776544
No 299
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.93 E-value=0.13 Score=50.19 Aligned_cols=104 Identities=12% Similarity=-0.030 Sum_probs=61.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.+.++....+.|+.+++. .......+.........+++.+.+. +..+-...+.|.+.++... ..
T Consensus 84 ~~~ly~~D~~~~~I~r~~~~--g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~---------- 150 (349)
T 3v64_C 84 RELVFWSDVTLDRILRANLN--GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HR---------- 150 (349)
T ss_dssp TTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SC----------
T ss_pred ccEEEEEeccCCceEEEecC--CCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-ce----------
Confidence 56677777777888888875 2222222222334457889998655 4455556678888876531 11
Q ss_pred CCceEEeecCCccEEEEEEcCCCC-EEEEEeCC-CcEEEEECC
Q 011436 103 DTNLFEILKSKTTVSAIEVSPDGK-QFSITSPD-RRIRVFWFR 143 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D-~~I~iwd~~ 143 (485)
...+...-.....++++|++. ++.+-... +.|..+++.
T Consensus 151 ---~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d 190 (349)
T 3v64_C 151 ---KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 190 (349)
T ss_dssp ---EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred ---EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC
Confidence 111222334578999999554 44554444 677777764
No 300
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.91 E-value=0.12 Score=51.26 Aligned_cols=105 Identities=11% Similarity=-0.040 Sum_probs=61.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.+.++....+.|+.|++. .......+.........+++.+.+. +.++-...+.|.+.++... ..
T Consensus 127 ~~~ly~~D~~~~~I~r~~~~--g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~-~~---------- 193 (386)
T 3v65_B 127 RELVFWSDVTLDRILRANLN--GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HR---------- 193 (386)
T ss_dssp TTEEEEEETTTTEEEEEETT--SCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC-SC----------
T ss_pred CCeEEEEeCCCCcEEEEecC--CCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC-ce----------
Confidence 56677777777888888885 2222222222233456788988655 4455556677877776531 11
Q ss_pred CCceEEeecCCccEEEEEEcCCCCEE-EEEeCC-CcEEEEECCC
Q 011436 103 DTNLFEILKSKTTVSAIEVSPDGKQF-SITSPD-RRIRVFWFRT 144 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~~l-at~s~D-~~I~iwd~~t 144 (485)
...+...-.....++++|++.+| .+-... +.|..+++..
T Consensus 194 ---~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 194 ---KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp ---EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred ---EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 11122233557899999966544 443344 6777777653
No 301
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.70 E-value=0.058 Score=57.65 Aligned_cols=111 Identities=7% Similarity=0.043 Sum_probs=70.0
Q ss_pred cceEEEEeCCCC-----------eEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEcCCCCC
Q 011436 24 KAGLAISDRNSS-----------FVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADD-KGIIEYWSPHTLQ 90 (485)
Q Consensus 24 ~~~l~vs~s~d~-----------~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~-dg~i~~Wd~~t~~ 90 (485)
++++++.|+.+. .+.+||...++-..+..+. .+.....++++.+++++++.|+. +..+++||+.+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 556666654332 6889998743334444443 23444556788899999999884 4578899876532
Q ss_pred CCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCcE
Q 011436 91 FPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PD-----RRIRVFWFRTGKL 147 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D-----~~I~iwd~~tg~~ 147 (485)
|.... .+..... -.++++.+||+.++.|+ .+ ..+.+||+.+++-
T Consensus 277 -------W~~~~-----~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 277 -------WIPGP-----DMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp -------EEECC-----CCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred -------eeECC-----CCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 32110 1111111 13456678999999999 44 5799999988764
No 302
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.69 E-value=0.042 Score=57.78 Aligned_cols=150 Identities=17% Similarity=0.088 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCCcceEEEec--C--------CCCeEEEEEcCCCC---EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 36 FVHIYDARADSNEPLISKKV--H--------MGPVKVMRYNPVFD---TVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 36 ~I~iwd~~~~~~~~~~~l~~--h--------~~~V~~l~fspd~~---~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
+|..+|.+ +++.+..++. | ..++. +...++|+ .++.++.+|.+.+.|.++++.. |..+.
T Consensus 273 ~v~Ald~~--tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~-----w~~~~ 344 (571)
T 2ad6_A 273 TIWGRDLD--TGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI-----VAEKV 344 (571)
T ss_dssp EEEEEETT--TCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEE-----EEEES
T ss_pred EEEEEecC--CCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEE-----eeecc
Confidence 68888987 7888777752 2 23332 23335774 5778899999999999887643 33322
Q ss_pred CC--------------ceEEe--e---cCCcc-----------EEEEEEcCCCCEEEEEe--------------------
Q 011436 103 DT--------------NLFEI--L---KSKTT-----------VSAIEVSPDGKQFSITS-------------------- 132 (485)
Q Consensus 103 ~~--------------~l~~~--~---~~~~~-----------v~~i~~spdg~~lat~s-------------------- 132 (485)
.. ++..- . ..... -..++++|++.+|.+.+
T Consensus 345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 424 (571)
T 2ad6_A 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence 11 11100 0 00000 02468899877776654
Q ss_pred -----------------CCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCc
Q 011436 133 -----------------PDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPS 195 (485)
Q Consensus 133 -----------------~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~ 195 (485)
.++.|..||+.+|+.+++++... ...
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-------------------------------------~~~ 467 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-------------------------------------AAW 467 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-------------------------------------CCC
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-------------------------------------Ccc
Confidence 34688889999998887764210 001
Q ss_pred eEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecc
Q 011436 196 NAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 230 (485)
Q Consensus 196 ~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~ 230 (485)
+..+...|..+.+++.++ +..||..||+++..+.-
T Consensus 468 ~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 468 GGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp SBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 112222456666788777 99999999999877643
No 303
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.67 E-value=0.46 Score=45.05 Aligned_cols=108 Identities=9% Similarity=0.033 Sum_probs=66.3
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC-C-cEEEEcCCCCCCCCceeEEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK-G-IIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d-g-~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++++.+.++....+.|..||.. +.....+. -...+..+++.++++++++.... + .|..+|..++++..
T Consensus 40 ~~~g~lyv~d~~~~~I~~~d~~---g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~------ 109 (306)
T 2p4o_A 40 APDGTIFVTNHEVGEIVSITPD---GNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET------ 109 (306)
T ss_dssp CTTSCEEEEETTTTEEEEECTT---CCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE------
T ss_pred CCCCCEEEEeCCCCeEEEECCC---CceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE------
Confidence 4567788888778999999975 23333333 23468899999999976665433 2 35455655543210
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~ 146 (485)
+..+ ........++..+++..+++-+.++.|..+|..+++
T Consensus 110 ------~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 110 ------LLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp ------EEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred ------EEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 0111 112234556667777666665568899999987654
No 304
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.67 E-value=0.092 Score=53.06 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=84.9
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeC-CC---cEEEEcCCCCCCCCceeEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADD-KG---IIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~-dg---~i~~Wd~~t~~~~~~~~~~~ 99 (485)
.+.+.++... +.|+.+|+. . ..+..+.........|+|++++++|..++. ++ ...+|....+.+..
T Consensus 149 ~g~Lyv~d~~-~~I~~id~~--~-~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~------ 218 (430)
T 3tc9_A 149 HNHLYLVGEQ-HPTRLIDFE--K-EYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKV------ 218 (430)
T ss_dssp EEEEEEEEBT-EEEEEEETT--T-TEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCS------
T ss_pred CCeEEEEeCC-CcEEEEECC--C-CEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceee------
Confidence 3556666544 789999985 3 334455445556789999999995555543 22 12333222222110
Q ss_pred EcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
...+.. ......++++| +|..+++-..++.|+.||..++........
T Consensus 219 ------~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~------------------------- 266 (430)
T 3tc9_A 219 ------ITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI------------------------- 266 (430)
T ss_dssp ------EEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-------------------------
T ss_pred ------eeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-------------------------
Confidence 011211 22357789999 788777777788999999987664221100
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecC--CCeEEEEcc
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATL--LGIKIVNLH 220 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~--~~i~v~d~~ 220 (485)
........++|+|+|++|..+.. ..|.+++..
T Consensus 267 ----------~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 267 ----------QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp ----------SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ----------CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 00011247999999996555543 348887654
No 305
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.63 E-value=0.19 Score=50.76 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=65.8
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCC---Cc-EEEEcCCCCCCCCceeEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDK---GI-IEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~d---g~-i~~Wd~~t~~~~~~~~~~~ 99 (485)
.+.+.++... +.|+.+|.. ++. +.++.........|+|+++++++++.... .. +...+... .+..
T Consensus 152 ~g~Lyv~D~~-~~I~~id~~--~g~-v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~-~~~~------ 220 (433)
T 4hw6_A 152 YDDLYWVGQR-DAFRHVDFV--NQY-VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS-GFTE------ 220 (433)
T ss_dssp TCEEEEECBT-SCEEEEETT--TTE-EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG-TTCC------
T ss_pred CCEEEEEeCC-CCEEEEECC--CCE-EEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC-Ceec------
Confidence 4667777544 789999985 333 44454455568999999999955554421 11 22222211 1100
Q ss_pred EcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEE
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKLRR 149 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~~~ 149 (485)
. ..+. .-.....++++| +|..+++-..++.|+.+|..+|+...
T Consensus 221 ---~---~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~ 264 (433)
T 4hw6_A 221 ---R---LSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE 264 (433)
T ss_dssp ---E---EEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE
T ss_pred ---c---cccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE
Confidence 0 0111 123357789999 78877776678899999998887633
No 306
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.43 E-value=0.11 Score=54.62 Aligned_cols=55 Identities=16% Similarity=-0.032 Sum_probs=39.3
Q ss_pred CeEEEEEcCCCCCcceEEEe--cCC--------CCeEEEEEc-CCCC---EEEEEeCCCcEEEEcCCCCCCC
Q 011436 35 SFVHIYDARADSNEPLISKK--VHM--------GPVKVMRYN-PVFD---TVISADDKGIIEYWSPHTLQFP 92 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~--~h~--------~~V~~l~fs-pd~~---~l~s~s~dg~i~~Wd~~t~~~~ 92 (485)
+.|.-+|.+ +++.+..++ .|. .++. +... .+|+ .++.++.+|.+.++|.+++++.
T Consensus 291 ~~v~AlD~~--TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 359 (582)
T 1flg_A 291 SGQVGVDPS--SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQ 359 (582)
T ss_dssp SEEEEECTT--TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred ceEEEEeCC--CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEe
Confidence 589999987 788887775 232 2332 2222 5674 7888999999999999987753
No 307
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.31 E-value=0.77 Score=43.47 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=57.1
Q ss_pred cceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCE
Q 011436 48 EPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQ 127 (485)
Q Consensus 48 ~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~ 127 (485)
+.+..+..+ .....++|+|+++++++-..++.|..||.... . ..+......+..++++|+|+.
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~---------------~~~~~~~~~p~gia~~~dG~l 85 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q---------------QIHATVEGKVSGLAFTSNGDL 85 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E---------------EEEEECSSEEEEEEECTTSCE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-e---------------EEEEeCCCCceeEEEcCCCcE
Confidence 344455433 45678999999998888778899999987541 1 011112235889999999997
Q ss_pred EEEEeCCC--cEEEEECCCCcEEE
Q 011436 128 FSITSPDR--RIRVFWFRTGKLRR 149 (485)
Q Consensus 128 lat~s~D~--~I~iwd~~tg~~~~ 149 (485)
+++..... .|..+|..+|+...
T Consensus 86 ~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 86 VATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEE
T ss_pred EEEeccCCcceEEEEcCCCCeEEE
Confidence 77654432 47777888888643
No 308
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.30 E-value=0.85 Score=49.72 Aligned_cols=107 Identities=7% Similarity=-0.041 Sum_probs=61.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC--CcceEEEecCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVMRYNPVFDT-VISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~--~~~~~~l~~h~~~V~~l~fspd~~~-l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.+.+.++....+.|+.+++.... ......+.........|++.+.++. .++-...+.|.+.++..
T Consensus 435 ~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG------------ 502 (791)
T 3m0c_C 435 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG------------ 502 (791)
T ss_dssp TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS------------
T ss_pred CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC------------
Confidence 45666776667788888875110 1222333334455678999987754 44555667888877653
Q ss_pred cCCCceEEe-ecCCccEEEEEEcCCCC-EEEEEeCC-CcEEEEECCCC
Q 011436 101 KSDTNLFEI-LKSKTTVSAIEVSPDGK-QFSITSPD-RRIRVFWFRTG 145 (485)
Q Consensus 101 ~~~~~l~~~-~~~~~~v~~i~~spdg~-~lat~s~D-~~I~iwd~~tg 145 (485)
.....+ ...-.....|+++|.+. ++.+-... ..|...++...
T Consensus 503 ---~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 503 ---VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp ---SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred ---CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 111112 22334588999999754 44443333 67888887543
No 309
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.20 E-value=0.94 Score=43.48 Aligned_cols=104 Identities=9% Similarity=-0.052 Sum_probs=61.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.+..+....+.|+.+++.. .......+...-.....+++.+.+. +..+-...+.|.+.++... .
T Consensus 46 ~~~lyw~D~~~~~I~r~~~~g-~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~----------- 112 (318)
T 3sov_A 46 HGLIYWSDVSEEAIKRTEFNK-TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-L----------- 112 (318)
T ss_dssp GTEEEEEETTTTEEEEEETTS-SSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-S-----------
T ss_pred CCEEEEEECCCCcEEEEEccC-CCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC-c-----------
Confidence 466777777788888888862 2111222222234567889987554 5555556778888877531 1
Q ss_pred CCceEEe-ecCCccEEEEEEcCCCCEEEEEe--CCCcEEEEECC
Q 011436 103 DTNLFEI-LKSKTTVSAIEVSPDGKQFSITS--PDRRIRVFWFR 143 (485)
Q Consensus 103 ~~~l~~~-~~~~~~v~~i~~spdg~~lat~s--~D~~I~iwd~~ 143 (485)
...+ .........+++.|.+.+|.... ..+.|...++.
T Consensus 113 ---~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 153 (318)
T 3sov_A 113 ---RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 153 (318)
T ss_dssp ---CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT
T ss_pred ---EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC
Confidence 1112 23335578999999655443333 24677777764
No 310
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.95 E-value=1 Score=43.82 Aligned_cols=103 Identities=11% Similarity=-0.026 Sum_probs=61.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.++++. ...|+..++. ... ...+......+..++|++....|.-++ ..+.|..+++.....
T Consensus 44 ~~~ll~~~--~~~I~~i~~~--g~~-~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~----------- 107 (349)
T 3v64_C 44 EPVLLFAN--RIDIRQVLPH--RSE-YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV----------- 107 (349)
T ss_dssp CCEEEEEC--BSCEEEECTT--SCC-EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------
T ss_pred CceeEeec--ccceEEEeCC--CCe-eEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-----------
Confidence 55666664 3558888875 222 333333334578999998766555444 567888887754211
Q ss_pred CCceEEeecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 011436 103 DTNLFEILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTG 145 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg 145 (485)
...+......+..+++.+.+ +.+.+-...+.|.+.++...
T Consensus 108 ---~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 108 ---EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp ---EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ---eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 01112222346788999854 45555566778988887643
No 311
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.90 E-value=1.4 Score=47.82 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=93.7
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEe---------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKK---------VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE 93 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~---------~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~ 93 (485)
+++.+-++. .++-+..||.. ++. ...+. .....|.++...+++.+|-.+..++.|.+||..++++..
T Consensus 366 ~~g~lWiGt-~~~Gl~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~ 441 (795)
T 4a2l_A 366 KDKNLWIGT-NDGGLNLYNPI--TQR-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN 441 (795)
T ss_dssp TTSCEEEEE-SSSCEEEECTT--TCC-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred CCCCEEEEE-CCCCeEEEcCC--CCc-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE
Confidence 355555544 45568888875 333 22222 123579999999999845556666778888887643211
Q ss_pred ceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccc
Q 011436 94 SEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
+..... .-....|.++...++|+..+... +.+.+||..+++... +... ..+.
T Consensus 442 ------~~~~~~----~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~-~~~~--------~~~~------- 493 (795)
T 4a2l_A 442 ------FNQRNS----QLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTT-IEKE--------KDGT------- 493 (795)
T ss_dssp ------ECTTTS----CCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEE-CCBC--------TTCC-------
T ss_pred ------eecCCC----CcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEE-cccc--------cccc-------
Confidence 110000 01234689999999998766543 468999998876532 2110 0000
Q ss_pred ccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeE
Q 011436 174 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKV 224 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~ 224 (485)
.-....+.++..|++|++.+... .|+.+||..+++.
T Consensus 494 --------------~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 494 --------------PVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp --------------BCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE
T ss_pred --------------ccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE
Confidence 00012345788999999776555 7899999988876
No 312
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.80 E-value=0.61 Score=46.12 Aligned_cols=102 Identities=11% Similarity=-0.024 Sum_probs=60.0
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.++++. ...|+.+|+. .... ..+......+..++|++....|. +-...+.|..|++....
T Consensus 87 ~~~l~~~~--~~~I~~i~~~--~~~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~------------ 149 (386)
T 3v65_B 87 EPVLLFAN--RIDIRQVLPH--RSEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN------------ 149 (386)
T ss_dssp CCEEEEEC--BSCEEEECTT--SCCC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC------------
T ss_pred cceeEeec--CccceeeccC--CCcE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC------------
Confidence 45566654 3568888885 3333 33333344578999998666554 44466788888775421
Q ss_pred CCceEE-eecCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 011436 103 DTNLFE-ILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTG 145 (485)
Q Consensus 103 ~~~l~~-~~~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg 145 (485)
... +......+..+++++.+. .+.+-...+.|.+.++...
T Consensus 150 ---~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~ 191 (386)
T 3v65_B 150 ---VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 191 (386)
T ss_dssp ---EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC
T ss_pred ---cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC
Confidence 111 122223456788987544 4455556677888777543
No 313
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.74 E-value=1.6 Score=42.18 Aligned_cols=163 Identities=11% Similarity=0.039 Sum_probs=101.4
Q ss_pred CCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceE-EEec----CC--CCeEEEEE---cCCCCEEEEEeC-
Q 011436 9 FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLI-SKKV----HM--GPVKVMRY---NPVFDTVISADD- 77 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~-~l~~----h~--~~V~~l~f---spd~~~l~s~s~- 77 (485)
.-|.++.|-.. .+++.+|.-..++|..||.. .+.... .+.+ .. ..+..|.| .|++++++.+..
T Consensus 13 ~yPE~~~wd~~----~g~~~vs~l~~g~V~~~~~~--~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 13 LTPEDTIYDRT----RQVFYQSNLYKGRIEVYNPK--TQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp CCCSCEEEETT----TTEEEEEETTTTEEEEECTT--TCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cCCcCccCcCC----CCEEEEEeccCCEEEEEcCC--CCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 45777888532 68899998889999999985 232222 2322 11 13578999 688777775442
Q ss_pred ------------CCcEEEEcCC---CCCCCCceeEEEEcCCCceEEeec-----------CCccEEEEEEcCCCCEEEEE
Q 011436 78 ------------KGIIEYWSPH---TLQFPESEVSFRLKSDTNLFEILK-----------SKTTVSAIEVSPDGKQFSIT 131 (485)
Q Consensus 78 ------------dg~i~~Wd~~---t~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~v~~i~~spdg~~lat~ 131 (485)
+..+..+|+. +++.... ..+.. ....+..++..++|+..+++
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~------------~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~ 154 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWS------------VNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF 154 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE------------EESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEE------------ecCccccccccccccccccCCceeEECCCCCEEEeC
Confidence 5667777776 5432211 11111 11347899999999999999
Q ss_pred eCC-CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEEEec
Q 011436 132 SPD-RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYAT 210 (485)
Q Consensus 132 s~D-~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s 210 (485)
+.- +.|..+|.. |+.+..+.. .. +. .....-.+.|+|+|+|+.|+...
T Consensus 155 s~~~~~I~rV~pd-G~~~~~~~~--------~~-~~---------------------~~~~~G~nGIv~~pdg~~Liv~~ 203 (334)
T 2p9w_A 155 ALGMPAIARVSAD-GKTVSTFAW--------ES-GN---------------------GGQRPGYSGITFDPHSNKLIAFG 203 (334)
T ss_dssp EESSCEEEEECTT-SCCEEEEEE--------CC-CC---------------------SSSCCSCSEEEEETTTTEEEEES
T ss_pred CCCCCeEEEEeCC-CCEEeeeee--------cC-CC---------------------cccccCcceEEEeCCCCEEEEEc
Confidence 877 877777764 332222210 00 00 01122346899999999888876
Q ss_pred CCC-eEEEEcc
Q 011436 211 LLG-IKIVNLH 220 (485)
Q Consensus 211 ~~~-i~v~d~~ 220 (485)
..+ +..+|+.
T Consensus 204 ~~g~L~~fD~~ 214 (334)
T 2p9w_A 204 GPRALTAFDVS 214 (334)
T ss_dssp SSSSEEEEECS
T ss_pred CCCeEEEEcCC
Confidence 655 8888876
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.72 E-value=0.72 Score=45.13 Aligned_cols=135 Identities=16% Similarity=0.195 Sum_probs=71.0
Q ss_pred CCCCeEEEEEeCCCCcceEEEEeCC--CCeEEEEEcCCCCC--cceEEEecC-CCCeEEEEEcCCCCEEEEEeC---CCc
Q 011436 9 FIPGAVEWVYKQGDVKAGLAISDRN--SSFVHIYDARADSN--EPLISKKVH-MGPVKVMRYNPVFDTVISADD---KGI 80 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~vs~s~--d~~I~iwd~~~~~~--~~~~~l~~h-~~~V~~l~fspd~~~l~s~s~---dg~ 80 (485)
|.|-.+..... .+...+++|.... +.+|.||++..+.. ..+.++.+. -...+.+++.++|.+.++.+. |..
T Consensus 112 f~PhGi~~~~d-~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~ 190 (355)
T 3sre_A 112 FNPHGISTFID-DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY 190 (355)
T ss_dssp CCEEEEEEEEC-TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHH
T ss_pred eeeeeeEEEEC-CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcc
Confidence 45555555433 2223345555433 67899998863222 233444433 235789999999988887651 100
Q ss_pred EEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCcE
Q 011436 81 IEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS-PDRRIRVFWFR-TGKL 147 (485)
Q Consensus 81 i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s-~D~~I~iwd~~-tg~~ 147 (485)
...|+... ..+. .-.|.+..+ .+..+...-...+.++|||||+.|..+. ..+.|+.||+. +|++
T Consensus 191 ~~~~e~~~-~~~~-g~vyr~d~~-~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l 256 (355)
T 3sre_A 191 LKSWEMHL-GLAW-SFVTYYSPN-DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL 256 (355)
T ss_dssp HHHHHHHT-TCCC-EEEEEECTT-CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred cccchhhc-cCCc-cEEEEEECC-eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE
Confidence 00110000 0000 011222212 1222333334578999999998776554 57899999986 3443
No 315
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.71 E-value=1.5 Score=41.79 Aligned_cols=105 Identities=10% Similarity=-0.079 Sum_probs=61.0
Q ss_pred eEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEcCCCCCCCCceeEEEEcCCC
Q 011436 26 GLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVI-SADDKGIIEYWSPHTLQFPESEVSFRLKSDT 104 (485)
Q Consensus 26 ~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~-s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~ 104 (485)
.|+++. ...|+..|+. .......+. ....+.+++|+++++.|. +-...+.|..+++..... ++
T Consensus 3 ~ll~~~--~~~I~~i~~~--~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~-----------~~ 66 (316)
T 1ijq_A 3 YLFFTN--RHEVRKMTLD--RSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------VS 66 (316)
T ss_dssp EEEEEC--BSSEEEEETT--SCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------
T ss_pred EEEEEC--CCeEEEEECC--CcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC-----------Cc
Confidence 456654 3569999986 444444443 345678999998766554 444568888887754100 01
Q ss_pred ceEE-eecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 011436 105 NLFE-ILKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 105 ~l~~-~~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~ 146 (485)
.... +...-..+..+++++.+ +.+++-...+.|.++|+....
T Consensus 67 ~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~ 110 (316)
T 1ijq_A 67 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 110 (316)
T ss_dssp -CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc
Confidence 1111 22222346789998755 444555677889999986443
No 316
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=95.60 E-value=1.5 Score=43.60 Aligned_cols=110 Identities=12% Similarity=-0.044 Sum_probs=64.5
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+...++++. ...|+..|+. ... ...+......+..|+|++....|.-++ ..+.|..+++......
T Consensus 82 ~~~~ll~~~--~~~I~~i~l~--~~~-~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~--------- 147 (400)
T 3p5b_L 82 SIAYLFFTN--RHEVRKMTLD--RSE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------- 147 (400)
T ss_dssp TSCEEEEEE--TTEEEEECTT--SCS-CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred ccceeEEec--cceeEEEccC--Ccc-eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---------
Confidence 345666664 4679998886 333 233334456788999999766555444 5677887776531100
Q ss_pred CCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE
Q 011436 102 SDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFRTGKL 147 (485)
Q Consensus 102 ~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~tg~~ 147 (485)
......+......+..+++.+ .++.+.+-...+.|.+.|+.....
T Consensus 148 -~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~ 193 (400)
T 3p5b_L 148 -SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 193 (400)
T ss_dssp -CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE
T ss_pred -CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce
Confidence 001111222334578899998 455555556678888888865443
No 317
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.55 E-value=2.9 Score=45.31 Aligned_cols=154 Identities=8% Similarity=0.020 Sum_probs=91.3
Q ss_pred cce-EEEEeCCCCeEEEEEcCCCCCcceEEEe-----cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeE
Q 011436 24 KAG-LAISDRNSSFVHIYDARADSNEPLISKK-----VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVS 97 (485)
Q Consensus 24 ~~~-l~vs~s~d~~I~iwd~~~~~~~~~~~l~-----~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~ 97 (485)
++. +.++. .++-+.+||.. +++ ...+. .+...|.++...+++.+.+... + .+.+||..+.++..-
T Consensus 416 ~g~~lWigt-~~~Gl~~~d~~--~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~--- 486 (795)
T 4a2l_A 416 KKSLVYIGT-HAGGLSILHRN--SGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTI--- 486 (795)
T ss_dssp TTTEEEEEE-TTTEEEEEETT--TCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEEC---
T ss_pred CCCEEEEEe-CcCceeEEeCC--CCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEc---
Confidence 455 55544 45668889875 333 33332 2346799999999998766654 4 577788765332110
Q ss_pred EEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccccccc
Q 011436 98 FRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFG 177 (485)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g 177 (485)
....... .-....|.++...++|+..+... +.+..||..+++. .+.... ... +
T Consensus 487 ---~~~~~~~--~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~--------~~~----------~ 539 (795)
T 4a2l_A 487 ---EKEKDGT--PVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASIL--------PVS----------N 539 (795)
T ss_dssp ---CBCTTCC--BCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCS--------CSC----------G
T ss_pred ---ccccccc--ccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCC--------CCC----------C
Confidence 0000000 01225689999999998776544 5689999888765 332100 000 0
Q ss_pred chhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEE
Q 011436 178 RRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVS 225 (485)
Q Consensus 178 ~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v 225 (485)
+ ....+.++..|++|++.+... .|+..||..+++..
T Consensus 540 --------l---~~~~i~~i~~d~~g~lWigT~-~Gl~~~d~~~~~~~ 575 (795)
T 4a2l_A 540 --------V---TKLFTNCIYEASNGIIWVGTR-EGFYCFNEKDKQIK 575 (795)
T ss_dssp --------G---GGSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEE
T ss_pred --------C---CCCeeEEEEECCCCCEEEEeC-CCceeECCCCCcEE
Confidence 0 011235788999999666544 49999999877653
No 318
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=95.49 E-value=0.67 Score=43.09 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=68.0
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCC-cceEEEe------cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCce
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSN-EPLISKK------VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESE 95 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~-~~~~~l~------~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~ 95 (485)
+++.++++.-.++.+.++++..... ..+.... .+......|+|+|+++.|..+.......+|... + ++..
T Consensus 79 ~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g-~~~~- 155 (255)
T 3qqz_A 79 GDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-G-LLSS- 155 (255)
T ss_dssp STTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-S-TTCS-
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-c-cccC-
Confidence 4566777766678899998862221 1122222 134456899999999776666655555555332 1 1111
Q ss_pred eEEEEcCCCceEEe-------ecCCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEe
Q 011436 96 VSFRLKSDTNLFEI-------LKSKTTVSAIEVSPDG-KQFSITSPDRRIRVFWFRTGKLRRVY 151 (485)
Q Consensus 96 ~~~~~~~~~~l~~~-------~~~~~~v~~i~~spdg-~~lat~s~D~~I~iwd~~tg~~~~~~ 151 (485)
..+..+ ..+...+.+++++|.. ++++.....+.+-++|.. |+.+..+
T Consensus 156 --------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~ 210 (255)
T 3qqz_A 156 --------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEM 210 (255)
T ss_dssp --------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEE
T ss_pred --------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEE
Confidence 011111 0122346899999965 455555567889999864 6766555
No 319
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.48 E-value=0.54 Score=47.32 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=38.4
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC
Q 011436 59 PVKVMRYNP-VFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP 133 (485)
Q Consensus 59 ~V~~l~fsp-d~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~ 133 (485)
....|+++| +...|..++..+.|+.+|+.+.. +..+.........++|+++|++|..+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---------------v~~~~~~~~~P~~ia~d~~G~~lyvad~ 198 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---------------VSTVYSGLSKVRTICWTHEADSMIITND 198 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---------------EEEEECCCSCEEEEEECTTSSEEEEEEC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---------------EEEEecCCCCcceEEEeCCCCEEEEEeC
Confidence 446889998 45555555554777777876422 2223334456899999999995555443
No 320
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.27 E-value=0.46 Score=48.74 Aligned_cols=116 Identities=10% Similarity=0.054 Sum_probs=64.9
Q ss_pred EEEEeCCCCcceEEEEeCCCCeEEEEEcCCCCCcceEEEec----CCCCeEEEEE-------cCCCCEEEEEeCCC-c--
Q 011436 15 EWVYKQGDVKAGLAISDRNSSFVHIYDARADSNEPLISKKV----HMGPVKVMRY-------NPVFDTVISADDKG-I-- 80 (485)
Q Consensus 15 ~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~----h~~~V~~l~f-------spd~~~l~s~s~dg-~-- 80 (485)
.|+..++...+.|.++....+.|++.|+. .+ .+.++-. .......|+| ++++++|..++..+ .
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~--~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLK--NR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETT--TT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECC--CC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 35555432245666666555678888885 33 3444432 2235789999 99999666555443 2
Q ss_pred ----EEEEcCCC-CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 011436 81 ----IEYWSPHT-LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSP-DGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 81 ----i~~Wd~~t-~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~sp-dg~~lat~s~D~~I~iwd~~ 143 (485)
|.+.+... +.+.... ....+..+. ....++++| ++.++++-..++.|..+|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~------~~~~v~~~~----~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRS------DIQLIAAYK----QCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTS------CEEEEEEES----CCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred cCceEEEEecCCCCceeecc------cceeeccCC----CceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 44444322 2322100 000111121 246788999 55666666677889999886
No 321
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.26 E-value=0.068 Score=57.67 Aligned_cols=105 Identities=8% Similarity=-0.022 Sum_probs=53.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCC--CcceEEEecCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADS--NEPLISKKVHMGPVKVMRYNPVF-DTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~--~~~~~~l~~h~~~V~~l~fspd~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.+.+.++....+.|+.+++.... ......+.........|++.+.+ .++++-...+.|.+.++...
T Consensus 417 ~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~----------- 485 (699)
T 1n7d_A 417 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV----------- 485 (699)
T ss_dssp TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC-----------
T ss_pred cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC-----------
Confidence 45666666667788888875200 11111111112234567887544 44555455678888876531
Q ss_pred cCCCceEEe-ecCCccEEEEEEcCCCC-EEEEEeCC-CcEEEEECC
Q 011436 101 KSDTNLFEI-LKSKTTVSAIEVSPDGK-QFSITSPD-RRIRVFWFR 143 (485)
Q Consensus 101 ~~~~~l~~~-~~~~~~v~~i~~spdg~-~lat~s~D-~~I~iwd~~ 143 (485)
.+..+ .........|+++|++. ++.+-... +.|.++++.
T Consensus 486 ----~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 486 ----KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp ----CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred ----ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 11112 11223467889999654 44432222 566666553
No 322
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=94.80 E-value=0.75 Score=46.30 Aligned_cols=121 Identities=10% Similarity=0.021 Sum_probs=69.1
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEE-e-cCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCC--CCCCCCceeEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISK-K-VHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPH--TLQFPESEVSF 98 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l-~-~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~--t~~~~~~~~~~ 98 (485)
++.+.++...++.|+.+|.. ++.....+ . +....-..++|+|+++ +.++-...+.|+.++.. ++.+... ..+
T Consensus 239 ~G~lyv~d~~~~~V~~~d~~--~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~-~~~ 315 (433)
T 4hw6_A 239 NGKIYYTRYHHAMISSYDPA--TGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVP-YIV 315 (433)
T ss_dssp TCCEEECBTTCSEEEEECTT--TCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCC-EEE
T ss_pred CCeEEEEECCCCEEEEEECC--CCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcE-EEE
Confidence 56777777677888888875 34432222 2 2222335799999999 45555566788886543 3322110 001
Q ss_pred EEcCCCceE-E---eecCCccEEEEEE---------cCCCCEEEEEeCCCcEEEEECCCCcEE
Q 011436 99 RLKSDTNLF-E---ILKSKTTVSAIEV---------SPDGKQFSITSPDRRIRVFWFRTGKLR 148 (485)
Q Consensus 99 ~~~~~~~l~-~---~~~~~~~v~~i~~---------spdg~~lat~s~D~~I~iwd~~tg~~~ 148 (485)
.-..+..-+ . ....-.....+++ .++|.++++=...+.|+.++. +|...
T Consensus 316 ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 316 CGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp EECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred EecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence 000000000 0 0001134678999 888888888777889999985 67543
No 323
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.63 E-value=1.4 Score=42.22 Aligned_cols=103 Identities=9% Similarity=-0.025 Sum_probs=61.6
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADD--KGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~--dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.+.+.++....+.|.++++. +.....+. ........+++.|.+..|.-++. .+.|...++..
T Consensus 90 ~g~ly~~d~~~~~I~~~~~d---G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG------------ 154 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLD---GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG------------ 154 (318)
T ss_dssp TTEEEEEETTTTEEEEEETT---SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS------------
T ss_pred CCeEEEEECCCCEEEEEECC---CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC------------
Confidence 44556666667788888875 23333332 34456689999997665555443 45666665532
Q ss_pred cCCCceEEe-ecCCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 011436 101 KSDTNLFEI-LKSKTTVSAIEVSPDGKQFSIT-SPDRRIRVFWFRT 144 (485)
Q Consensus 101 ~~~~~l~~~-~~~~~~v~~i~~spdg~~lat~-s~D~~I~iwd~~t 144 (485)
+....+ ...-.....++|+|++..|..+ +..+.|..+|+..
T Consensus 155 ---~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 155 ---SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp ---CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ---CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 111112 1223457899999976655444 4567899998753
No 324
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.36 E-value=0.51 Score=50.23 Aligned_cols=118 Identities=5% Similarity=0.039 Sum_probs=75.3
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEcCCCCCCCCceeEEEEcCCCceEEeec-CCccEEEEEEcCCCCEE
Q 011436 62 VMRYNP-VFDTVISADDKG-----------IIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQF 128 (485)
Q Consensus 62 ~l~fsp-d~~~l~s~s~dg-----------~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~i~~spdg~~l 128 (485)
++++.| ++++++.++.+. .+.+||+.+.+... +..+.. +.....++++.++|+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~------------~~~~~~~~~~~~~~~~~~~~g~ly 257 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD------------RTVTVTKHDMFCPGISMDGNGQIV 257 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC------------CEEEECSCCCSSCEEEECTTSCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe------------CcccCCCCCCccccccCCCCCCEE
Confidence 566777 888888887543 57788887744221 112211 22234457888999999
Q ss_pred EEEeC-CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCCCCEEE
Q 011436 129 SITSP-DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLI 207 (485)
Q Consensus 129 at~s~-D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~ 207 (485)
+.|+. +..+++||+.+++-... . .. .......+++.-++|++++
T Consensus 258 v~GG~~~~~v~~yd~~t~~W~~~-~--------------------~~--------------~~~R~~~s~~~~~dg~iyv 302 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSSSDSWIPG-P--------------------DM--------------QVARGYQSSATMSDGRVFT 302 (656)
T ss_dssp EECSSSTTCEEEEEGGGTEEEEC-C--------------------CC--------------SSCCSSCEEEECTTSCEEE
T ss_pred EeCCCCCCceEEecCcCCceeEC-C--------------------CC--------------CccccccceEEecCCeEEE
Confidence 99994 56899999987753211 0 00 0011224566777999999
Q ss_pred EecC-------CCeEEEEcccCeEEE
Q 011436 208 YATL-------LGIKIVNLHTNKVSR 226 (485)
Q Consensus 208 ~~s~-------~~i~v~d~~tg~~v~ 226 (485)
.|+. ..+.+||..+++-..
T Consensus 303 ~GG~~~~~~~~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 303 IGGSWSGGVFEKNGEVYSPSSKTWTS 328 (656)
T ss_dssp ECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred EeCcccCCcccccceEeCCCCCccee
Confidence 9883 248999999887543
No 325
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.31 E-value=4 Score=44.10 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=88.8
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEE----ecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISK----KVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFR 99 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l----~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~ 99 (485)
++.+-++. .++-+.+||.. +... ..+ ......|.++...+++.+.+ +..++.+..+|..++++..-
T Consensus 373 ~g~lWigt-~~~Gl~~~~~~--~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~----- 442 (781)
T 3v9f_A 373 QGKLWIGT-DGGGINVFENG--KRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQII----- 442 (781)
T ss_dssp TSCEEEEE-BSSCEEEEETT--EEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEEC-----
T ss_pred CCCEEEEe-CCCcEEEEECC--CCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEe-----
Confidence 44555544 23457778864 2211 111 12346799999888888666 45556677788765332110
Q ss_pred EcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011436 100 LKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 100 ~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
. .. ......|.++...++|+..+. +. +.+..||..+++........ ..
T Consensus 443 -~--~~----~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~----------~~------------- 490 (781)
T 3v9f_A 443 -E--LE----KNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTS----------NS------------- 490 (781)
T ss_dssp -C--ST----TTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTT----------TS-------------
T ss_pred -c--cC----CCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCc----------cc-------------
Confidence 0 00 112356899999999876654 44 56899998887653221100 00
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEE
Q 011436 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVS 225 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v 225 (485)
......+.++..|++|++.+.....|+..+|..+++..
T Consensus 491 --------~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~ 528 (781)
T 3v9f_A 491 --------QLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR 528 (781)
T ss_dssp --------SCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE
T ss_pred --------ccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE
Confidence 00012345788999999766555578988998877653
No 326
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.08 E-value=5.5 Score=43.31 Aligned_cols=108 Identities=12% Similarity=-0.073 Sum_probs=61.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
...++++. ...|+..++. ... ...+......+..|+|++....| .+-...+.|..+++......
T Consensus 395 ~p~Ll~an--~~~Ir~i~l~--~~~-~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---------- 459 (791)
T 3m0c_C 395 IAYLFFTN--RHEVRKMTLD--RSE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------- 459 (791)
T ss_dssp CCEEEEEC--BSSEEEECTT--SCC-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------
T ss_pred cccccccc--ccceeEeecc--CCc-ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC----------
Confidence 34556553 4568888885 333 23333445667899999865544 45455677887776531110
Q ss_pred CCceEEeecCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 011436 103 DTNLFEILKSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGK 146 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~ 146 (485)
+.....+......+..|++.+.++ ++.+-...+.|.+.++....
T Consensus 460 ~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~ 504 (791)
T 3m0c_C 460 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 504 (791)
T ss_dssp --CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe
Confidence 011111222334567899998775 44555567889999986443
No 327
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.93 E-value=2.8 Score=40.38 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=54.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeec------CCccEEEEEE---cCC
Q 011436 55 VHMGPVKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK------SKTTVSAIEV---SPD 124 (485)
Q Consensus 55 ~h~~~V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~------~~~~v~~i~~---spd 124 (485)
....--.+++|++....+.-++ ..++|..||...+.. ..+ .+.+ ....+..+.| .|+
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~------------~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~ 76 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH------------FNV-VIDGASSNGDGEQQMSGLSLLTHDNS 76 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE------------EEE-CCTTTCCSSCCSEEEEEEEESSSSSC
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE------------EEE-ecCCccccCCCcceeeEEEEeccCCC
Confidence 3333446788988655555555 789999999864211 001 1211 1123689999 699
Q ss_pred CCEEEEEe-------------CCCcEEEEECC---CCcEEEEec
Q 011436 125 GKQFSITS-------------PDRRIRVFWFR---TGKLRRVYD 152 (485)
Q Consensus 125 g~~lat~s-------------~D~~I~iwd~~---tg~~~~~~~ 152 (485)
|+++++.. .+..+..||+. +++.++..+
T Consensus 77 grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~d 120 (334)
T 2p9w_A 77 KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVN 120 (334)
T ss_dssp CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEE
T ss_pred CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEec
Confidence 88888643 26789999999 888876654
No 328
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=93.92 E-value=0.24 Score=53.34 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=83.5
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEe-cCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKK-VHMGPVKVMRYNPVFDTVISADD-K-GIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~-~h~~~V~~l~fspd~~~l~s~s~-d-g~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
.+.+.++....+.|.++++. +....++. ........|+++|.+..|.-++. . +.|...++..
T Consensus 464 ~g~LY~tD~~~~~I~v~d~d---g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG------------ 528 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTK---GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG------------ 528 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSS---SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS------------
T ss_pred CCcEEEEeccCCeEEEEecC---CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC------------
Confidence 34555665566788888875 33333432 22234578889986554443332 2 5666655532
Q ss_pred cCCCceEEee-cCCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccc
Q 011436 101 KSDTNLFEIL-KSKTTVSAIEVSPDGK-QFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGR 178 (485)
Q Consensus 101 ~~~~~l~~~~-~~~~~v~~i~~spdg~-~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~ 178 (485)
+....+. ..-.....|+|+|++. ++++-+..+.|..+|+..... +++-.. .
T Consensus 529 ---~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~----------~------------- 581 (699)
T 1n7d_A 529 ---VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILED----------E------------- 581 (699)
T ss_dssp ---CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCC----------S-------------
T ss_pred ---CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEec----------C-------------
Confidence 1111111 1223467899999754 445555677899998864322 222100 0
Q ss_pred hhhhhHhhhccCCCCCceEEECCCCCEEEEecC-CCeEEEEcccCeEEEeecc
Q 011436 179 RMAVEKEIEKTETAPPSNAIFDESSNFLIYATL-LGIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 179 ~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~-~~i~v~d~~tg~~v~~~~~ 230 (485)
.....-..|+++.+ +++++... ..|.+++..+|+.++++..
T Consensus 582 ----------~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 582 ----------KRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ----------SSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ----------CcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 00001135666654 33333333 3499999999998888754
No 329
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=93.59 E-value=2.6 Score=40.94 Aligned_cols=132 Identities=13% Similarity=0.100 Sum_probs=82.8
Q ss_pred CCCCeEEEEEeCCCCcceEEEEeCCCCeEEEEEcCCC-----CCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 011436 9 FIPGAVEWVYKQGDVKAGLAISDRNSSFVHIYDARAD-----SNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEY 83 (485)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~l~vs~s~d~~I~iwd~~~~-----~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~ 83 (485)
+.|+.+|..+.... ...+++....++.+..|++... +.+.+++|..- +.+..|...+....|..+.++..|..
T Consensus 128 ~~pyGlcly~~~~~-g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKT-GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTT-CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCC-CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEE
Confidence 66777777664322 2233444446799999998421 23567887643 57889999999999999998866544
Q ss_pred EcCCCCCCCCceeEEEEcCCCceEEee-cC-CccEEEEEE--cCCCC-EEEEEe-CCCcEEEEECC-CCcEEEEe
Q 011436 84 WSPHTLQFPESEVSFRLKSDTNLFEIL-KS-KTTVSAIEV--SPDGK-QFSITS-PDRRIRVFWFR-TGKLRRVY 151 (485)
Q Consensus 84 Wd~~t~~~~~~~~~~~~~~~~~l~~~~-~~-~~~v~~i~~--spdg~-~lat~s-~D~~I~iwd~~-tg~~~~~~ 151 (485)
+|.+...-.. .+.+..+. ++ ...+..|++ .++|+ +|+++| .+.+..+||.. +.+.+..|
T Consensus 206 ~da~p~~~~~---------~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 206 FSAEPDGGSN---------GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EECSTTSCSC---------CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EeCCcCCCCC---------ceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 4643211000 11111121 11 235788888 66777 666666 57799999997 77777776
No 330
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=93.55 E-value=9.3 Score=41.17 Aligned_cols=151 Identities=8% Similarity=0.023 Sum_probs=88.1
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKK---VHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRL 100 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~---~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~ 100 (485)
++.+.++. .++-+..||.. +++ ...+. .....|.++...+++.+.+... +.+.++|..+.++... ..
T Consensus 417 ~g~lWigt-~~~Gl~~~~~~--~~~-~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~----~~ 486 (781)
T 3v9f_A 417 EGNLWFGT-YLGNISYYNTR--LKK-FQIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHH----YD 486 (781)
T ss_dssp TSCEEEEE-TTEEEEEECSS--SCE-EEECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEE----EC
T ss_pred CCCEEEEe-ccCCEEEEcCC--CCc-EEEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEec----cc
Confidence 45555543 34557777764 332 23332 1346799999988887666544 4577788766443211 00
Q ss_pred cCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchh
Q 011436 101 KSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRM 180 (485)
Q Consensus 101 ~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 180 (485)
.... ......|.++...++|+..+. +.++.+..||..+++.. .+... .
T Consensus 487 ~~~~-----~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~-~~~~~-----------~-------------- 534 (781)
T 3v9f_A 487 TSNS-----QLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVR-KFNQY-----------E-------------- 534 (781)
T ss_dssp TTTS-----SCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEE-EECTT-----------T--------------
T ss_pred Cccc-----ccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEE-EccCC-----------C--------------
Confidence 0000 001356899999999987664 44445788998777643 33210 0
Q ss_pred hhhHhhhccCCCCCceEEECCCCCEEEEecCCCe-EEEEcccCeE
Q 011436 181 AVEKEIEKTETAPPSNAIFDESSNFLIYATLLGI-KIVNLHTNKV 224 (485)
Q Consensus 181 ~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i-~v~d~~tg~~ 224 (485)
.-....+.++..|++|++.+... .|+ ..||..+++.
T Consensus 535 -------~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~ 571 (781)
T 3v9f_A 535 -------GFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDY 571 (781)
T ss_dssp -------TCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred -------CCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcE
Confidence 00012245788899999666544 787 8888877764
No 331
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=93.52 E-value=0.16 Score=43.28 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=64.6
Q ss_pred CCCCEEEEEeCCeEEEEEecCCCChHHHHHHHHhhhc----CccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCcccc
Q 011436 327 SLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRN----EYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFED 402 (485)
Q Consensus 327 ~~~~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~----~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~ 402 (485)
...+.+.+.-.-..++++|+.+.||+||+.|+++.-- ..|.+-.++.+ | ..+..
T Consensus 27 ~~~~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~LPl~~~~~~~g~E~y~~l-p---------------------~~l~~ 84 (153)
T 2nnz_A 27 GVEMRLRIRFESAECEVELYEEWAPETVRAIADALPIKSTANRWGDEIYFTT-Q---------------------VAVEK 84 (153)
T ss_dssp SSCCCEEEEETTEEEEECCCTTSCHHHHHHHHHTCSEEEEEEEETTEEEECC-S---------------------CCCCC
T ss_pred cCCeEEEEEECCEEEEEEEcCCCCHHHHHHHHHhCCcEEEHHhhCCcEEEEC-C---------------------CCCCC
Confidence 3456788888888999999999999999999997521 11222111110 1 01111
Q ss_pred -ccccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCC------CCcEEEEEEcCHHHHHHH
Q 011436 403 -EFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDN------KHTVFGRVIKGMDVVQAI 460 (485)
Q Consensus 403 -e~~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~------~~~vfG~V~~G~~vl~~i 460 (485)
|. .-....+|-|+.-..+. .+-|-+++.|.+.+ .-.+||+|.+|++.|.++
T Consensus 85 ~en--~~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~ 142 (153)
T 2nnz_A 85 EEN--SKDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV 142 (153)
T ss_dssp SSC--CBCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred CCC--CcccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence 21 11234568888865443 37777888754332 247899999997775443
No 332
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}
Probab=92.76 E-value=1.3 Score=38.18 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=65.3
Q ss_pred CCCEEEEEeCCe--EEEEEecCCCChHHHHHHHHhhh------cCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCc
Q 011436 328 LPDNVILHTTMG--DIHMKLYPEECPKTVENFTTHCR------NEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGRE 399 (485)
Q Consensus 328 ~~~~~~~~t~~G--~i~i~L~~~~aP~~~~nF~~l~~------~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~ 399 (485)
.+..+.+.-..+ .++.+|..+.||+||+.|.++.- ...|.|-.++=-++.|-. ..
T Consensus 20 ~~r~i~itl~~~g~~~~A~Lldd~APkTcaA~~~~LP~~~~viHarwSGeeVy~~lp~f~~-----------------~~ 82 (188)
T 3kop_A 20 MARYINITLEKRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGKYARNEIYNLVPAFAP-----------------KE 82 (188)
T ss_dssp CCCEEEEEETTTTEEEEEEECTTTSHHHHHHHHHHCCEEEECEECSSSSSEEEEEEECCSS-----------------SC
T ss_pred cceEEEEEEecCCeEEEEEEccccChHHHHHHHHhCCCCcceEEEEEecceEEEECCcccc-----------------cC
Confidence 335566665555 37899999999999999999752 123666666655555421 01
Q ss_pred cccccccCCCCCCceEEEEccc----------C--C------CCCCceEEEEccCCC--------CCCCCCcEEEEEEcC
Q 011436 400 FEDEFHKSLRHDRPFTVSMANA----------G--P------NTNGSQFFITTVATP--------WLDNKHTVFGRVIKG 453 (485)
Q Consensus 400 ~~~e~~~~~~~~~~g~v~~~~~----------~--~------~~~~sqf~i~~~~~~--------~ld~~~~vfG~V~~G 453 (485)
.+.|+.. .+..+|-|++-.. | + .....++.|-.+.+- ++-| .+|++|++|
T Consensus 83 ~g~EN~T--~~P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpG--N~F~TIveG 158 (188)
T 3kop_A 83 PGAENTT--VTPIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPG--NVFATIVEG 158 (188)
T ss_dssp CCSCSEE--SSCCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCE--EEEEEEEES
T ss_pred CCcCCCC--CCCCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecC--cEEEEEecC
Confidence 1222211 2334555554210 1 0 111235555555543 4444 689999999
Q ss_pred HHHHHHHhc
Q 011436 454 MDVVQAIEK 462 (485)
Q Consensus 454 ~~vl~~i~~ 462 (485)
.|-|.++.+
T Consensus 159 le~la~~c~ 167 (188)
T 3kop_A 159 LDEMAAACQ 167 (188)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998866644
No 333
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.55 E-value=2.7 Score=38.16 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeec-CCccEEEEEEcCCCCEEEEEeCCCc
Q 011436 58 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK-SKTTVSAIEVSPDGKQFSITSPDRR 136 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~i~~spdg~~lat~s~D~~ 136 (485)
..+..++|+|++.+.+. .+|.+.--+..+.+... |- .+.+ .+-. .-..-.++.|.|+|.+.++ .|+.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~----W~-~s~t---~IG~~Gw~~F~a~~fD~~G~LYav--~dG~ 108 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN----WM-GRAK---KIGNGGWNQFQFLFFDPNGYLYAV--SKDK 108 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC----HH-HHCE---EEECSCGGGCSEEEECTTSCEEEE--ETTE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCccc----cc-cccc---EecccccccceEEEECCCCCEEEe--CCCE
Confidence 47789999999987666 55654433543311110 00 0000 0000 0011367899999998888 6688
Q ss_pred EEEEECC
Q 011436 137 IRVFWFR 143 (485)
Q Consensus 137 I~iwd~~ 143 (485)
|+-++..
T Consensus 109 iyr~~pP 115 (236)
T 1tl2_A 109 LYKASPP 115 (236)
T ss_dssp EEEESCC
T ss_pred EEEeCCC
Confidence 8777653
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=92.52 E-value=3.1 Score=41.56 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=73.5
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCC---C-----c--ceEEEec------CCCCeEEEEEcCC---CCEEEEEeCCCcEE
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADS---N-----E--PLISKKV------HMGPVKVMRYNPV---FDTVISADDKGIIE 82 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~---~-----~--~~~~l~~------h~~~V~~l~fspd---~~~l~s~s~dg~i~ 82 (485)
+|++.+++-. .+..|.|-.++.+. . . ..+++.- ...+|..+.|||- +..|+.--.|++||
T Consensus 74 SpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir 152 (452)
T 3pbp_A 74 STSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTIT 152 (452)
T ss_dssp CTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEE
T ss_pred CCCCCEEEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEE
Confidence 4555555555 35789998886211 1 1 1234431 3578999999996 45899999999999
Q ss_pred EEcCCC-CCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCc
Q 011436 83 YWSPHT-LQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS--PDRRIRVFWFRTGK 146 (485)
Q Consensus 83 ~Wd~~t-~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s--~D~~I~iwd~~tg~ 146 (485)
+||+.. .+.|. .++.....+.+...-..|.+++|+++|-.|-..+ ..|.|+-.-.--.+
T Consensus 153 ~yDl~~s~~~P~-----~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP~ 214 (452)
T 3pbp_A 153 MFDILNSQEKPI-----VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPS 214 (452)
T ss_dssp EEETTCTTSCCE-----EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESSCCCS
T ss_pred EEEcccCCCCCc-----chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECCCCcc
Confidence 999875 22222 2221112222223335688999999887665544 66777666555444
No 335
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.07 E-value=4.8 Score=39.25 Aligned_cols=100 Identities=9% Similarity=-0.067 Sum_probs=53.7
Q ss_pred CCcceEEEEeC------------CCCeEEEEEcCCCCCcceEEE--ec-----CCCCeEEEEEcC--CCC-EEEEE-eC-
Q 011436 22 DVKAGLAISDR------------NSSFVHIYDARADSNEPLISK--KV-----HMGPVKVMRYNP--VFD-TVISA-DD- 77 (485)
Q Consensus 22 ~~~~~l~vs~s------------~d~~I~iwd~~~~~~~~~~~l--~~-----h~~~V~~l~fsp--d~~-~l~s~-s~- 77 (485)
.+++++.++++ .+|.|.+||.+..+.+ ...+ .+ ..-....+.+.+ ++. .|..+ ..
T Consensus 58 ~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~-~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~ 136 (355)
T 3sre_A 58 LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA-VSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG 136 (355)
T ss_dssp CTTSEEEEEECCC-----------CCEEEEEETTSSSCC-EEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST
T ss_pred cCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc-eEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC
Confidence 34677777762 6899999998622222 2222 23 223566777765 344 33333 22
Q ss_pred -CCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecC-CccEEEEEEcCCCCEEEEEe
Q 011436 78 -KGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS-KTTVSAIEVSPDGKQFSITS 132 (485)
Q Consensus 78 -dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~i~~spdg~~lat~s 132 (485)
+..|.+|+.....-. ...+..+.+. -...+.+++.|+|+++++..
T Consensus 137 ~~s~ielf~~d~~~~~----------~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 137 SSSTVEVFKFQEEEKS----------LLHLKTIRHKLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp TCCEEEEEEEETTTTE----------EEEEEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred CCCeEEEEEEECCCCE----------EEEEeccccCCCCCCceEEEeCCCCEEecCC
Confidence 467777754321100 0111223222 13578999999999888754
No 336
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=91.94 E-value=9.3 Score=36.82 Aligned_cols=225 Identities=15% Similarity=0.221 Sum_probs=115.5
Q ss_pred CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecC
Q 011436 33 NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS 112 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~ 112 (485)
++..|-|-|+.. ..++.+.--.-. +.-.||..+.+|--. ..+++++|+++ ...+..+.-.
T Consensus 47 ~~~~VvIiDl~n-~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnlet--------------K~klks~~~~ 106 (365)
T 2xzh_A 47 EQAQVVIIDMND-PSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEM--------------KSKMKAHTMT 106 (365)
T ss_dssp TEEEEEEEETTS-TTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTT--------------TEEEEEEECS
T ss_pred CCCEEEEEECCC-CCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHH--------------hhhhcceecC
Confidence 345788889872 223333222222 233588888776655 67899999987 2233333322
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCC
Q 011436 113 KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 191 (485)
Q Consensus 113 ~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~ 191 (485)
. .|.-=.|-.+ +.|+-.+ +..|+-|++.. ....+.++.|.... .
T Consensus 107 e-~VvfWkWis~-~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~--------------------------------~ 151 (365)
T 2xzh_A 107 D-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA--------------------------------G 151 (365)
T ss_dssp S-CEEEEEECSS-SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGT--------------------------------T
T ss_pred C-ccEEEEecCC-CeEEEEc-CCcEEEEcccCCCCCceeeecchhcc--------------------------------c
Confidence 2 2333344333 3444433 56799999864 34455665433221 0
Q ss_pred CCCceEEECCCCCEEEEecC-------CC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccc
Q 011436 192 APPSNAIFDESSNFLIYATL-------LG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANAN 263 (485)
Q Consensus 192 ~~~~~i~fd~~g~~l~~~s~-------~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~ 263 (485)
..+.+-.-|++.++++..+- .| +++++.+.+ +-+.++||. ++|..-
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha--------a~F~~~----------------- 205 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA--------ASFAQF----------------- 205 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSE--------EEEEEE-----------------
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeee--------eeeEEE-----------------
Confidence 11123345788887665432 24 778887654 457888886 333210
Q ss_pred cCCCCCCCCeEEEeeecC---ceEEEEecCCC-CCCCc-cCCCccccCCCCCcccccccccCCCCccCCCCCEEEEEeCC
Q 011436 264 ESKEPFSDPTLLCCAFKR---HRIYLFSRREP-EEPED-ATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTM 338 (485)
Q Consensus 264 ~~~~~~~d~~l~~s~~~d---~~i~~f~~~~~-~~~~~-~~~~rd~~n~~p~~e~~~~~~~~~~~~~~~~~~~~~~~t~~ 338 (485)
....+...+.+||-+.+. +++.+-.--.+ ..... ....-|+|-..-.+..++.+... ....+.+.+-|..
T Consensus 206 ~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv-----s~kygviyviTK~ 280 (365)
T 2xzh_A 206 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-----SEKHDVVFLITKY 280 (365)
T ss_dssp CCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE-----ETTTTEEEEEETT
T ss_pred ecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe-----cccCCEEEEEeCC
Confidence 001122445677766554 56666653221 00000 00123443332234455555532 3455778888888
Q ss_pred eEEEE
Q 011436 339 GDIHM 343 (485)
Q Consensus 339 G~i~i 343 (485)
|-|.+
T Consensus 281 G~ihl 285 (365)
T 2xzh_A 281 GYIHL 285 (365)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87653
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=91.49 E-value=5.3 Score=38.75 Aligned_cols=69 Identities=17% Similarity=0.110 Sum_probs=44.3
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEE----eecCCccEEEEEEcCC---
Q 011436 52 SKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE----ILKSKTTVSAIEVSPD--- 124 (485)
Q Consensus 52 ~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~----~~~~~~~v~~i~~spd--- 124 (485)
.+...-...+.|+|.|||+++++--..|.|++++..+++.. .+.. +.........|+|+||
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~------------~v~~~~~v~~~g~~GllGia~~Pdf~~ 93 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT------------ELGEVPGVSPSGEGGLLGIALSPDYAS 93 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE------------EEEECTTCCCBTTBSEEEEEECTTHHH
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe------------eecccCceeecCCCCceeeEecccccc
Confidence 33333455689999999998887766899998876543210 1111 1233456899999995
Q ss_pred -CCEEEEEe
Q 011436 125 -GKQFSITS 132 (485)
Q Consensus 125 -g~~lat~s 132 (485)
+...++.+
T Consensus 94 ~g~lYv~yt 102 (347)
T 3das_A 94 DHMVYAYFT 102 (347)
T ss_dssp HCEEEEEEE
T ss_pred CCEEEEEEe
Confidence 55555544
No 338
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=91.29 E-value=16 Score=38.37 Aligned_cols=145 Identities=10% Similarity=-0.021 Sum_probs=82.1
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.+.++...++.|+.+++. .......+.........|++.+.+..| .+-...+.|.+-++... .
T Consensus 48 ~~~lywtD~~~~~I~r~~~~--g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~-~----------- 113 (628)
T 4a0p_A 48 DNRIYWTDISLKTISRAFMN--GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ-H----------- 113 (628)
T ss_dssp TTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST-T-----------
T ss_pred CCEEEEEECCCCeEEEEECC--CCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC-c-----------
Confidence 56677777778888888885 222222233222456789998776644 44445677777776431 1
Q ss_pred CCceEEe-ecCCccEEEEEEcCC-CCEEEEE-eCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccch
Q 011436 103 DTNLFEI-LKSKTTVSAIEVSPD-GKQFSIT-SPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRR 179 (485)
Q Consensus 103 ~~~l~~~-~~~~~~v~~i~~spd-g~~lat~-s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 179 (485)
...+ ...-.....|++.|. |.++.+- +....|...++..... ..+-.
T Consensus 114 ---~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~-------------------------- 163 (628)
T 4a0p_A 114 ---RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVP-------------------------- 163 (628)
T ss_dssp ---CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC--------------------------
T ss_pred ---EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEEC--------------------------
Confidence 1112 123345789999984 5555553 2245666666643322 12100
Q ss_pred hhhhHhhhccCCCCCceEEECCCCCEEEEecCC--CeEEEEcccC
Q 011436 180 MAVEKEIEKTETAPPSNAIFDESSNFLIYATLL--GIKIVNLHTN 222 (485)
Q Consensus 180 ~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~--~i~v~d~~tg 222 (485)
.......|++|++++.|-.+-.. .|..+|+..+
T Consensus 164 ----------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 164 ----------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp ----------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ----------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 00112588999987766555443 3788887543
No 339
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=90.59 E-value=8.4 Score=39.31 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=37.1
Q ss_pred eEEEEEcCC-C-CEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeec----CCccEEEEEE-------cCCCC
Q 011436 60 VKVMRYNPV-F-DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILK----SKTTVSAIEV-------SPDGK 126 (485)
Q Consensus 60 V~~l~fspd-~-~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~----~~~~v~~i~~-------spdg~ 126 (485)
...|+|+|. . .++++....+.|++.|+++.. +..+.. .......++| +++|.
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~---------------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~ 205 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM---------------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAE 205 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE---------------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE---------------EEEEEccCccccCCCcEEEEeecccccCCCCC
Confidence 468999983 4 455555545677777876532 222221 1234899999 99999
Q ss_pred EEEEEeCC
Q 011436 127 QFSITSPD 134 (485)
Q Consensus 127 ~lat~s~D 134 (485)
+|..+...
T Consensus 206 ~lyvad~~ 213 (496)
T 3kya_A 206 YMIVAIDY 213 (496)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 66665543
No 340
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=89.71 E-value=6 Score=38.24 Aligned_cols=76 Identities=7% Similarity=0.144 Sum_probs=45.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCC----CCEEEEEeC
Q 011436 58 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD----GKQFSITSP 133 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spd----g~~lat~s~ 133 (485)
..-..++|.|||+++++ ..++.|.+++ +++. .. +. ... .+.........++|+|| +..+++...
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~---~~---~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-ST---YA---ELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EE---EE---ECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cE---ee---cce--EeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence 34579999999996665 5568898887 2210 00 00 000 11222356899999998 444455443
Q ss_pred C-----CcEEEEECCCC
Q 011436 134 D-----RRIRVFWFRTG 145 (485)
Q Consensus 134 D-----~~I~iwd~~tg 145 (485)
. ..|..|+...+
T Consensus 99 ~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp CTTSSEEEEEEEEECSS
T ss_pred CCCCCccEEEEEEeCCC
Confidence 3 56777776544
No 341
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=89.71 E-value=14 Score=35.04 Aligned_cols=70 Identities=14% Similarity=0.283 Sum_probs=45.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcC--CCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEe
Q 011436 55 VHMGPVKVMRYNPVFDTVISADDKGIIEYWSP--HTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITS 132 (485)
Q Consensus 55 ~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~--~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s 132 (485)
.+...+.++.++|++.+++.+...+..+-+|. .+ |+.. -......+..++++|+++.++. +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---------W~~~-------~~~~~~~~~~~~~~~~g~~~~~-~ 222 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---------WEPH-------NRTTSRRLHNMGFTPDGRLWMI-V 222 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS---------CEEE-------ECCSSSCEEEEEECTTSCEEEE-E
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc---------eeEC-------CCCCCCccceeEECCCCCEEEE-e
Confidence 56668899999999888877655555555553 22 1110 1123456788999999987654 5
Q ss_pred CCCcEEEEE
Q 011436 133 PDRRIRVFW 141 (485)
Q Consensus 133 ~D~~I~iwd 141 (485)
.++.+++++
T Consensus 223 ~~G~~~~s~ 231 (327)
T 2xbg_A 223 NGGKIAFSD 231 (327)
T ss_dssp TTTEEEEEE
T ss_pred CCceEEEec
Confidence 677777664
No 342
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=89.45 E-value=23 Score=37.20 Aligned_cols=103 Identities=10% Similarity=0.047 Sum_probs=60.3
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEec------CCCCeEEEEEcCCCCEE-EEEeCCCcEEEEcCCCCCCCCcee
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKV------HMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEV 96 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~------h~~~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~t~~~~~~~~ 96 (485)
++.+..+....+.|+.++.. ++ .....+.. ....+..|++...++.| .+-+..+.|.+-++.. +
T Consensus 351 ~~~iy~sD~~~~~I~r~~~~-g~-~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G-~------ 421 (628)
T 4a0p_A 351 DKQLYWIDSRQNMIRKAQED-GS-QGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG-R------ 421 (628)
T ss_dssp TTEEEEEETTTTEEEEEETT-SC-SCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-C------
T ss_pred CCeEEEEecCcceEEEEEcC-CC-CceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC-C------
Confidence 45666776667788888775 12 22222222 23467899999986644 5656677887776532 1
Q ss_pred EEEEcCCCceEEe-ecCCccEEEEEEcC-CCCEEEEEeCCC--cEEEEECC
Q 011436 97 SFRLKSDTNLFEI-LKSKTTVSAIEVSP-DGKQFSITSPDR--RIRVFWFR 143 (485)
Q Consensus 97 ~~~~~~~~~l~~~-~~~~~~v~~i~~sp-dg~~lat~s~D~--~I~iwd~~ 143 (485)
....+ ...-..+.+|++.| .|.++.|-.... .|...++.
T Consensus 422 --------~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d 464 (628)
T 4a0p_A 422 --------SVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD 464 (628)
T ss_dssp --------EEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT
T ss_pred --------eEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC
Confidence 11112 22345689999999 777776644333 45555553
No 343
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=89.45 E-value=3.4 Score=40.06 Aligned_cols=99 Identities=11% Similarity=0.070 Sum_probs=53.8
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe---cCCCCeEEEEEcCC----CCEEEEEeCC-----CcEEEEcCCCC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKK---VHMGPVKVMRYNPV----FDTVISADDK-----GIIEYWSPHTL 89 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~---~h~~~V~~l~fspd----~~~l~s~s~d-----g~i~~Wd~~t~ 89 (485)
+|++.++++.. ++.|++++ . +..+.+..+. ........|+|+|+ +.+.++.... ..|..++....
T Consensus 39 ~pdG~l~V~e~-~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 39 LPDGGMLIAER-PGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp CTTSCEEEEET-TTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSS
T ss_pred cCCCeEEEEeC-CCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCC
Confidence 45777888874 58899988 3 2222333222 12346789999998 4444554432 45555554432
Q ss_pred CCCCceeEEEEcCCCceEE-ee---cCCccEEEEEEcCCCCEEEEEe
Q 011436 90 QFPESEVSFRLKSDTNLFE-IL---KSKTTVSAIEVSPDGKQFSITS 132 (485)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~-~~---~~~~~v~~i~~spdg~~lat~s 132 (485)
.+.. .+.+.. +. ........++|+|||.++++-+
T Consensus 116 ~~~~---------~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 116 RGVL---------DRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp CEEE---------EEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CcCc---------eEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 1100 011111 22 1112236899999998777654
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=89.44 E-value=3.6 Score=41.52 Aligned_cols=63 Identities=11% Similarity=0.199 Sum_probs=38.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEee------cCCccEEEEEEcCC----CCE
Q 011436 58 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEIL------KSKTTVSAIEVSPD----GKQ 127 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~------~~~~~v~~i~~spd----g~~ 127 (485)
...++|+|.|+|+++++-...+.|.+++..+++.. .+..+. ........|+|+|| +..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~------------~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK------------TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE------------EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe------------EEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence 45579999999998877554456888865443211 111111 12355789999994 555
Q ss_pred EEEEe
Q 011436 128 FSITS 132 (485)
Q Consensus 128 lat~s 132 (485)
.++.+
T Consensus 95 Yv~~s 99 (454)
T 1cru_A 95 YISGT 99 (454)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55554
No 345
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=88.82 E-value=7.8 Score=38.69 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCCCcceEEEecC----CCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCC-CCCCc------eeEEEEcC
Q 011436 34 SSFVHIYDARADSNEPLISKKVH----MGPVKVMRYNPVFDTVISADDKGIIEYWSPHTL-QFPES------EVSFRLKS 102 (485)
Q Consensus 34 d~~I~iwd~~~~~~~~~~~l~~h----~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~-~~~~~------~~~~~~~~ 102 (485)
++.||.-++.. ...-+.|+-- -..|..+..||+|++||..+.. .|.+-.+-.. ..... ...+.++.
T Consensus 40 ~n~iR~~~i~~--~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 40 DNIIRWYNVLT--DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp TTEEEEEETTT--CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred CCEEEEEECCC--CCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEc
Confidence 56778777752 2234444422 2357889999999999988754 6776644311 11110 00111111
Q ss_pred CCceEEeecCCccEEEEEEcCC---CCEEEEEeCCCcEEEEECCC
Q 011436 103 DTNLFEILKSKTTVSAIEVSPD---GKQFSITSPDRRIRVFWFRT 144 (485)
Q Consensus 103 ~~~l~~~~~~~~~v~~i~~spd---g~~lat~s~D~~I~iwd~~t 144 (485)
+.. -......|..+.|+|- |..|++--.|++||+||+..
T Consensus 117 ~~~---~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 117 DEE---EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp GGC---C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred CCc---ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 110 0113577999999994 56899999999999999975
No 346
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=88.76 E-value=5.4 Score=38.66 Aligned_cols=75 Identities=8% Similarity=-0.010 Sum_probs=44.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCC----CCEEEEEeC
Q 011436 58 GPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD----GKQFSITSP 133 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spd----g~~lat~s~ 133 (485)
.....++|.|+++++++ ..+|.|+++|. +++ .. +. ... .+.........|+|+|| |..+++.+.
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~--~~---~~---~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK--KL---VA---SFD--VANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE--EE---EE---ECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc--eE---ee---ccc--eeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 45689999999986665 55689988873 322 10 00 000 01122345889999998 555555442
Q ss_pred ---C----CcEEEEECCC
Q 011436 134 ---D----RRIRVFWFRT 144 (485)
Q Consensus 134 ---D----~~I~iwd~~t 144 (485)
+ ..|..|+...
T Consensus 97 ~~~~~~~~~~v~r~~~~~ 114 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDG 114 (354)
T ss_dssp ECGGGCEEEEEEEEEECS
T ss_pred cCCCCCcceEEEEEEECC
Confidence 3 4566666544
No 347
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=88.74 E-value=0.017 Score=50.76 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=69.1
Q ss_pred CCCCCeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCCEE----------
Q 011436 268 PFSDPTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPDNV---------- 332 (485)
Q Consensus 268 ~~~d~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~~~---------- 332 (485)
...+-.++.|..++..|.||...+|++.+| .++++++|+.+. ....+++|. +++...+.+...
T Consensus 19 ~~~~~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQg--Gd~~~~g~gg~si~g~~~~dE~ 96 (176)
T 2a2n_A 19 RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQT--GDPTGTGMGGESIWGGEFEDEF 96 (176)
T ss_dssp CCCSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEE--CCTTSSSSCCCCTTSSCBCCCC
T ss_pred CCCCEEEEEecCccEEEEEeCCCChHHHHHHHHHhhcCccCCCEEEEEECCcEEEc--cCCCCCCCCCCcccCCcccccc
Confidence 335567888999999999999999999998 777889999987 455677777 443322111110
Q ss_pred ---EEEeCCeEEEEEecCCCChH--HHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011436 333 ---ILHTTMGDIHMKLYPEECPK--TVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 333 ---~~~t~~G~i~i~L~~~~aP~--~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
+-+...|.|-+--. .|. +.+-|+.+....+.|+ +.|-||+.|+
T Consensus 97 ~~~l~h~~~G~lsmA~~---gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gm 146 (176)
T 2a2n_A 97 HSTLRHDRPYTLSMANA---GSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGM 146 (176)
T ss_dssp CTTCCSCSSSEEEECCS---STTCBCSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred ccccccCCceEEEEEeC---CCCCcccEEEEECCCCCccCCCeeEEEEEeCCH
Confidence 11223455544321 243 3456776666666664 7899998774
No 348
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=87.82 E-value=24 Score=35.38 Aligned_cols=225 Identities=15% Similarity=0.227 Sum_probs=113.7
Q ss_pred CCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecC
Q 011436 33 NSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS 112 (485)
Q Consensus 33 ~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~ 112 (485)
++..|-|-|+.. ...+.+.--.-. +.-.||..+.+|--. ..++.++|+++ ...+..+.-.
T Consensus 46 ~~~~vvIiDl~~-~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~--------------K~klks~~~~ 105 (494)
T 1bpo_A 46 EQAQVVIIDMND-PSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEM--------------KSKMKAHTMT 105 (494)
T ss_dssp TCCEEEEEETTS-TTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTT--------------TEEEEEEECS
T ss_pred CCCeEEEEECCC-CCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHH--------------hhhhcceecC
Confidence 345788889872 223333221212 334678777666544 67999999987 2233333323
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCC
Q 011436 113 KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRT-GKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTET 191 (485)
Q Consensus 113 ~~~v~~i~~spdg~~lat~s~D~~I~iwd~~t-g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~ 191 (485)
...|.--=+|++ .|+..+ +..|+-|++.. ...++.++.|.... .
T Consensus 106 e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~--------------------------------~ 150 (494)
T 1bpo_A 106 DDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA--------------------------------G 150 (494)
T ss_dssp SCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGT--------------------------------T
T ss_pred CCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecchhcc--------------------------------c
Confidence 333333223433 444433 66899999864 34455665433221 0
Q ss_pred CCCceEEECCCCCEEEEecC-------CC-eEEEEcccCeEEEeecccCCccceeeeeeccCCccCcceeeeeccccccc
Q 011436 192 APPSNAIFDESSNFLIYATL-------LG-IKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVRKIPAAAANAN 263 (485)
Q Consensus 192 ~~~~~i~fd~~g~~l~~~s~-------~~-i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~ 263 (485)
..+.+-.-|++.++++..+- .| +++++.+.+ +-+.++||.. -|..+-+=
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa--~F~~~~~~-------------------- 207 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA--SFAQFKME-------------------- 207 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEE--EEEEEECT--------------------
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeee--eeEEEecC--------------------
Confidence 11123345788887765432 24 778887654 4478888862 22222111
Q ss_pred cCCCCCCCCeEEEeeecC---ceEEEEecCCCCCC-Cc-cCCCccccCCCCCcccccccccCCCCccCCCCCEEEEEeCC
Q 011436 264 ESKEPFSDPTLLCCAFKR---HRIYLFSRREPEEP-ED-ATKGRDIFNEKPPPDELLAVSDIGNSVTTSLPDNVILHTTM 338 (485)
Q Consensus 264 ~~~~~~~d~~l~~s~~~d---~~i~~f~~~~~~~~-~~-~~~~rd~~n~~p~~e~~~~~~~~~~~~~~~~~~~~~~~t~~ 338 (485)
.+...+.+||-+.+. +++.+-.--.+-.- .. ....-|+|-..-.+..++.+... ....+.+.+-|..
T Consensus 208 ---g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv-----s~kygviyviTK~ 279 (494)
T 1bpo_A 208 ---GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI-----SEKHDVVFLITKY 279 (494)
T ss_dssp ---TCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE-----ETTTTEEEEEETT
T ss_pred ---CCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe-----cccCCEEEEEecC
Confidence 111334566666554 56666644222000 00 00123444332234455555532 3455678888888
Q ss_pred eEEEE
Q 011436 339 GDIHM 343 (485)
Q Consensus 339 G~i~i 343 (485)
|-|.+
T Consensus 280 G~i~l 284 (494)
T 1bpo_A 280 GYIHL 284 (494)
T ss_dssp SEEEE
T ss_pred ceEEE
Confidence 86543
No 349
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=86.42 E-value=35 Score=35.75 Aligned_cols=104 Identities=9% Similarity=-0.037 Sum_probs=59.1
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTV-ISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l-~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
.+.+.++....+.|+.+++.. .......+..--.....|++.+.+..| .+-...+.|.+-++...
T Consensus 51 ~~~ly~sD~~~~~I~r~~~~g-~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~------------- 116 (619)
T 3s94_A 51 HGLIYWSDVSEEAIKRTEFNK-TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS------------- 116 (619)
T ss_dssp TTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-------------
T ss_pred CCEEEEEECCCCeEEEEEccC-CCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-------------
Confidence 556777776678888888751 211222333333567899999966644 45556788888877531
Q ss_pred CCceEEee-cCCccEEEEEEcCC-CCEEEEEe-CCCcEEEEECC
Q 011436 103 DTNLFEIL-KSKTTVSAIEVSPD-GKQFSITS-PDRRIRVFWFR 143 (485)
Q Consensus 103 ~~~l~~~~-~~~~~v~~i~~spd-g~~lat~s-~D~~I~iwd~~ 143 (485)
....+. ..-.....|++.|. |.++.|-. ....|...++.
T Consensus 117 --~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 117 --LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp --SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred --CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 111121 23344678999996 44555532 23455555553
No 350
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=85.33 E-value=27 Score=33.58 Aligned_cols=104 Identities=6% Similarity=0.068 Sum_probs=68.4
Q ss_pred CCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecC-
Q 011436 34 SSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKS- 112 (485)
Q Consensus 34 d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~- 112 (485)
..+++|+|++ +.+.+....- ..+|..=+|-.+..+ +-.. +..|..|+++.... +.+.|..|
T Consensus 86 g~~LQiFnle--tK~klks~~~-~e~VvfWkWis~~~L-~lVT-~taVyHWs~~~~s~-------------P~kvFdR~~ 147 (365)
T 2xzh_A 86 GKTLQIFNIE--MKSKMKAHTM-TDDVTFWKWISLNTV-ALVT-DNAVYHWSMEGESQ-------------PVKMFDRHS 147 (365)
T ss_dssp TTEEEEEETT--TTEEEEEEEC-SSCEEEEEECSSSEE-EEEE-SSEEEEEESSTTCC-------------CEEEEECCG
T ss_pred CCeEEEechH--Hhhhhcceec-CCccEEEEecCCCeE-EEEc-CCcEEEEcccCCCC-------------Cceeeecch
Confidence 5789999997 6666666654 468888888665543 3333 45888998865222 33334333
Q ss_pred ---CccEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCcEEEEeccchh
Q 011436 113 ---KTTVSAIEVSPDGKQFSITSP-------DRRIRVFWFRTGKLRRVYDESLE 156 (485)
Q Consensus 113 ---~~~v~~i~~spdg~~lat~s~-------D~~I~iwd~~tg~~~~~~~~~~~ 156 (485)
...+..-.-++|.++++..|- .|.+.+|..+.+. -+.+++|..
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa 200 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAA 200 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeee
Confidence 256777788899998876652 3788999886544 456666654
No 351
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=84.12 E-value=3.1 Score=37.72 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011436 115 TVSAIEVSPDGKQFSITSPDRRIRVFWFRT 144 (485)
Q Consensus 115 ~v~~i~~spdg~~lat~s~D~~I~iwd~~t 144 (485)
.+..++|+|+|.+.|+ .++.++-.+..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t 69 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPT 69 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCC
Confidence 4568999999998887 566665555544
No 352
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=83.19 E-value=16 Score=35.25 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=52.3
Q ss_pred CcceEEEEeCCCCeEEEEEcCCCCCcceEEEe---cCCCCeEEEEEcCC----CCEEEEEeC---C----CcEEEEcCCC
Q 011436 23 VKAGLAISDRNSSFVHIYDARADSNEPLISKK---VHMGPVKVMRYNPV----FDTVISADD---K----GIIEYWSPHT 88 (485)
Q Consensus 23 ~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~---~h~~~V~~l~fspd----~~~l~s~s~---d----g~i~~Wd~~t 88 (485)
|++.++++.. ++.|+++|.. +. +.+..+. ........|+|+|+ +.+.++-+. + ..|..|+...
T Consensus 38 pdG~l~V~e~-~g~I~~~d~~-G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~ 114 (354)
T 3a9g_A 38 GGGRYLVTER-PGRLVLISPS-GK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDG 114 (354)
T ss_dssp ETTEEEEEET-TTEEEEECSS-CE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECS
T ss_pred CCCeEEEEeC-CCEEEEEeCC-Cc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECC
Confidence 4567888875 4899998743 11 2333222 12346789999998 455555442 2 3455555432
Q ss_pred C--CCCCceeEEEEcCCCceE-Eeec-CCccEEEEEEcCCCCEEEEEe
Q 011436 89 L--QFPESEVSFRLKSDTNLF-EILK-SKTTVSAIEVSPDGKQFSITS 132 (485)
Q Consensus 89 ~--~~~~~~~~~~~~~~~~l~-~~~~-~~~~v~~i~~spdg~~lat~s 132 (485)
. .+.. .+.+. .+.. .......++|.|||.++++-+
T Consensus 115 ~~~~~~~---------~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 115 STFKLKE---------VKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp SSCCEEE---------EEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred CCcCcCc---------cEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 1 1100 01111 1221 111246799999998777754
No 353
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.00 E-value=9.7 Score=36.78 Aligned_cols=66 Identities=11% Similarity=0.150 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCC----CCEEEEEe
Q 011436 58 GPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD----GKQFSITS 132 (485)
Q Consensus 58 ~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spd----g~~lat~s 132 (485)
...+.|+|.|+|+ ++++ ...|.|++++... +.... + . +.. ..+.........++|+|| +...++.+
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g-~~~~~---~--~-~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGK-GLSAP---L--S-GVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTT-EECCC---C--B-SCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCC-ceeeE---e--c-CCc-ccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 3457899999999 6655 5678898887532 11000 0 0 000 001122345789999995 55555544
No 354
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=82.58 E-value=22 Score=34.85 Aligned_cols=166 Identities=9% Similarity=0.107 Sum_probs=93.9
Q ss_pred CCCceeEEEEcCC--CceEEeec------CCccEEEEEEc---CC----CCE-EEEEeCCCcEEEEECCCCcEEEEeccc
Q 011436 91 FPESEVSFRLKSD--TNLFEILK------SKTTVSAIEVS---PD----GKQ-FSITSPDRRIRVFWFRTGKLRRVYDES 154 (485)
Q Consensus 91 ~~~~~~~~~~~~~--~~l~~~~~------~~~~v~~i~~s---pd----g~~-lat~s~D~~I~iwd~~tg~~~~~~~~~ 154 (485)
++..++.|+++++ +.++.+.= ..+....+++. |+ +.+ .++=+....|-|+|+.+++..|.+..+
T Consensus 121 ~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~ 200 (381)
T 3q6k_A 121 HRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT 200 (381)
T ss_dssp CCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred CCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence 3445677999888 66655432 23567888887 32 223 233335778999999999998877432
Q ss_pred hhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECCC----CCEEEEecCCCeEEEEcccCeEEEeecc
Q 011436 155 LEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDES----SNFLIYATLLGIKIVNLHTNKVSRILGK 230 (485)
Q Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~~----g~~l~~~s~~~i~v~d~~tg~~v~~~~~ 230 (485)
.. ......+... |..+ .-...+..|+.||+ ++.|-+....+-+++.+.|.-+ ..
T Consensus 201 ~~------pd~~~~~~i~----G~~~--------~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L----~~ 258 (381)
T 3q6k_A 201 FK------AERPTKFDYG----GKEY--------EFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKEL----KQ 258 (381)
T ss_dssp GS------CCSCEEEEET----TEEE--------EECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHH----SS
T ss_pred Cc------cccCcceEEC----CEEe--------EeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHh----hC
Confidence 11 1111111111 1111 01223568999998 8999999888888888766322 11
Q ss_pred cCCccceeeeeeccCCccCcceeeeeccccccccCCCCCCCCeEEEeeecCceEEEEecCC
Q 011436 231 VENNDRFLRIALYQGDRSSKKVRKIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRRE 291 (485)
Q Consensus 231 ~~~~~r~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~ 291 (485)
... ...+-.++.+........+.| +..++.++.+-.+.+.|++|+...
T Consensus 259 ~~~---~~~v~~~G~kg~~s~~~~~~~----------D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 259 KGG---KLNPELLGNRGKYNDAIALAY----------DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp TTC---CCCCEEEEECCTTCCEEEEEE----------CTTTCEEEEEESSSSEEEEEETTS
T ss_pred cch---hhceEEeeecCCCCCcceEEE----------eCCCCeEEEEeccCCeEEEEeCCC
Confidence 110 001112222211111111111 125789999999999999998764
No 355
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=81.50 E-value=8.3 Score=37.24 Aligned_cols=122 Identities=15% Similarity=0.164 Sum_probs=66.7
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCC--CceEEeecCCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc
Q 011436 70 DTVISADDKGIIEYWSPHTLQFPESEVSFRLKSD--TNLFEILKSKTTVSAIEVSPDGKQFSIT-SPDRRIRVFWFRTGK 146 (485)
Q Consensus 70 ~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~--~~l~~~~~~~~~v~~i~~spdg~~lat~-s~D~~I~iwd~~tg~ 146 (485)
.+++.++.||.|.-.|.++++ +.|+++.. .++........ .-++..++.. ..||.+..+|..+|.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~-----~~W~~~~~~~~p~~~~~~~~~-------~~~~~~~vv~p~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGH-----IIWSIEPENFQPLIEIQEPSR-------LETYETLIIEPFGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTE-----EEEEECGGGSCCSEECCCSCT-------TTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCc-----EEEEecCCccCCcEEecCCcc-------ccCCcEEEEEECCCCEEEEEECCCCc
Confidence 467888899999888888764 35666544 22222211111 1233444443 589999999999996
Q ss_pred EEEEeccchhHHHhhhcCCCcccccccccccchhhhhHhhhccCCCCCceEEECC----CCCEEEEecCCC-eEEEEccc
Q 011436 147 LRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTETAPPSNAIFDE----SSNFLIYATLLG-IKIVNLHT 221 (485)
Q Consensus 147 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~i~fd~----~g~~l~~~s~~~-i~v~d~~t 221 (485)
....+. +..+.. .+|. . .. + .-+..|+ .+..+.+++.++ +..+|+.|
T Consensus 79 ~~~~~~--~~~lv~--~SP~--~-~~----~-----------------~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t 130 (339)
T 2be1_A 79 QKLPLS--IRQLVS--TSPL--H-LK----T-----------------NIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN 130 (339)
T ss_dssp EEEEEE--HHHHHT--TCSE--E-EE----C-----------------C----------CCEEEEECEEEEEEEEEETTT
T ss_pred EEeeec--ccccee--cccc--c-cC----C-----------------CceeecccccccCCEEEEEecCCEEEEEECCC
Confidence 554432 111110 0000 0 00 0 0011111 344566677766 88999999
Q ss_pred CeEEEeeccc
Q 011436 222 NKVSRILGKV 231 (485)
Q Consensus 222 g~~v~~~~~~ 231 (485)
|+++..+...
T Consensus 131 G~~~W~~~~~ 140 (339)
T 2be1_A 131 GEIISAFGPG 140 (339)
T ss_dssp CCEEEEESTT
T ss_pred CcEEEEEecC
Confidence 9999887543
No 356
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=79.53 E-value=53 Score=38.08 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=42.6
Q ss_pred ecCCCCCeEEEEEeCCCCcceEEEE--eCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 011436 6 RLPFIPGAVEWVYKQGDVKAGLAIS--DRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEY 83 (485)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l~vs--~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~ 83 (485)
+++..|.++.|-+..-.++..+.|= .++...|-|-|+..+ ..+.+.--.- .+.-.||..+.+|--. ..++.+
T Consensus 17 ~lGi~~~~i~f~~~T~eSDkyicvre~~~~~~~vvIidl~~~-~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQi 90 (1630)
T 1xi4_A 17 NLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDP-SNPIRRPISA----DSAIMNPASKVIALKA-GKTLQI 90 (1630)
T ss_pred hcCCCcccccccceeeecCceEEEEecCCCCceEEEEECCCC-CCcccccccc----hhhccCCCcceEEEec-CCeEEE
Confidence 4456666666655544445555543 223447888888621 2222211111 1233577776665543 679999
Q ss_pred EcCCC
Q 011436 84 WSPHT 88 (485)
Q Consensus 84 Wd~~t 88 (485)
+|+++
T Consensus 91 Fnl~~ 95 (1630)
T 1xi4_A 91 FNIEM 95 (1630)
T ss_pred eehHH
Confidence 99876
No 357
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1
Probab=78.95 E-value=0.057 Score=46.56 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=67.6
Q ss_pred CCCeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCCE----------E--
Q 011436 270 SDPTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPDN----------V-- 332 (485)
Q Consensus 270 ~d~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~~----------~-- 332 (485)
+...++.|..++..|.||...+|++.+| .++++++|+... ....+++|. +++...+.+.. .
T Consensus 5 ~~~v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQg--Gd~~~~g~gg~si~g~~~~dE~~~ 82 (160)
T 2fu0_A 5 PKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQT--GDPSGDGTGGESIWGNEFEDEFFD 82 (160)
T ss_dssp CCEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEE--CCTTSSSSCCCCTTSSCBCCCCBT
T ss_pred CCEEEEEecCccEEEEEeCCCChHHHHHHHHHhccCccCCCEEEEEECCCEEEe--CCcCCCCCCCCcccCCCccccccC
Confidence 4457788899999999999999999998 777889999987 455677776 44332211111 0
Q ss_pred -EEEeCCeEEEEEecCCCCh--HHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011436 333 -ILHTTMGDIHMKLYPEECP--KTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 333 -~~~t~~G~i~i~L~~~~aP--~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
.-+...|.|-+--. .| .+.+-|+.+....+.|+ +.|-||+.|+
T Consensus 83 ~l~h~~~G~lsmA~~---gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~ 130 (160)
T 2fu0_A 83 HLNHSKPFMVSMANC---GPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGS 130 (160)
T ss_dssp TBCSSSSSEEEECCS---STTCBCSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred CcccCCceEEEEecC---CCCCcccEEEEECCCCCccCCCcEEEEEEEcCH
Confidence 11223455544321 23 33456676666666664 7888998774
No 358
>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A
Probab=78.72 E-value=8.2 Score=31.86 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=60.0
Q ss_pred CEEEEEeCCeEEEEEecCCCChHHHHHHHHhhh----cCccCCceEEEEEeCcEEEecCCCCCCCCCcccCCCcccc-cc
Q 011436 330 DNVILHTTMGDIHMKLYPEECPKTVENFTTHCR----NEYYNNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFED-EF 404 (485)
Q Consensus 330 ~~~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~----~~~y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~-e~ 404 (485)
+.|.+-.....++++|+.. |.|++.|.+..- -..|. .-+|=-.|.. ++. |.
T Consensus 13 ~~~~~~~~~~~v~a~L~Dn--p~Ta~~~~~~LPl~~~~~~~g-~E~y~~~p~~---------------------l~~~e~ 68 (136)
T 1zx8_A 13 MRVELLFESGKCVIDLNEE--YEVVKLLKEKIPFESVVNTWG-EEIYFSTPVN---------------------VQKMEN 68 (136)
T ss_dssp EEEEEECSSCEEEEEEETT--SHHHHHHHHHCSEEEECEESS-SEEEEECSCC---------------------CCCCSS
T ss_pred eEEEEeeCCcEEEEEEcCC--HHHHHHHHHHCCcEEEHHHhC-CcEEEECCcc---------------------CCCCCC
Confidence 4566666777899999754 889999988752 22343 3333222321 110 11
Q ss_pred ccCCCCCCceEEEEcccCCCCCCceEEEEccCCCCCCC------CCcEEEEEEcCHHHHHHH
Q 011436 405 HKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDN------KHTVFGRVIKGMDVVQAI 460 (485)
Q Consensus 405 ~~~~~~~~~g~v~~~~~~~~~~~sqf~i~~~~~~~ld~------~~~vfG~V~~G~~vl~~i 460 (485)
.. .-..+|-|+.-..+. .|-|-+++.|.+.+ .-.+||||.+|++.+.++
T Consensus 69 -~~-~~~~~GDIaYw~pgg-----~LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v 123 (136)
T 1zx8_A 69 -PR-EVVEIGDVGYWPPGK-----ALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKI 123 (136)
T ss_dssp -EE-SSBCTTEEEEEGGGT-----EEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGC
T ss_pred -CC-ccCCCCcEEEeCCCC-----EEEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhC
Confidence 11 113557888766544 37777888765543 257999999997765443
No 359
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}
Probab=78.51 E-value=0.072 Score=47.73 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=69.4
Q ss_pred CCCeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCC----------CCE---
Q 011436 270 SDPTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSL----------PDN--- 331 (485)
Q Consensus 270 ~d~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~----------~~~--- 331 (485)
..-.+|-|..++..|.||...+|++++| .++++++|+.+. ....+++|. +++..... .++
T Consensus 11 ~~~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~F~iQg--Gd~~~~g~gg~si~g~~f~dE~~~ 88 (203)
T 2k7n_A 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQG--GDPTGTGRGGASIYGKQFEDELHP 88 (203)
T ss_dssp CSEEEEEESSCEEEEEECTTTCTTHHHHHHHHHHHTCGGGCEEEEEETTTEEEE--ECSSSSSSCCCTTSCSCBCCCCCC
T ss_pred CCEEEEEeCCCcEEEEEccCCCcHHHHHHHHHHhcCccCCCEEEEEeCCcEEEc--CCCCCCCCCCCccCCCcccccccc
Confidence 3457788889999999999999999998 777889999877 455677776 33221111 111
Q ss_pred EEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011436 332 VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 332 ~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
.+-+...|.|-+-=.. .-....+-|+.+....+.|+ +.|-||+.|+
T Consensus 89 ~l~h~~~G~lsMAn~g-pnsngSQFFIt~~~~~~LDg~~tVFG~VveGm 136 (203)
T 2k7n_A 89 DLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136 (203)
T ss_dssp SSCCCSSCEEEEEESS-TTCEEEEEEEESSCCCSSTTTSCEEEEEESCH
T ss_pred cccCCCCeEEEEeeCC-CCCcccEEEEEcCCCCccCCCeeEEEEEEcCH
Confidence 1123345776665221 11234466777777777664 7899998774
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.45 E-value=2.6 Score=46.89 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=35.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011436 115 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 115 ~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
.+.+++..++..++.|-|.|+++|+|++.+|+|+.+.+-
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 567888889999999999999999999999999998753
No 361
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Probab=78.01 E-value=0.053 Score=48.69 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=65.0
Q ss_pred eEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCC---CCccCCCCCE-------------
Q 011436 273 TLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIG---NSVTTSLPDN------------- 331 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~---~~~~~~~~~~------------- 331 (485)
.+|.|..++..|.||...+|++++| .++++++|+.+. ....+++|.... ++...+.+..
T Consensus 9 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~~g~gg~si~~~~~~~~g~~ 88 (201)
T 3bo7_A 9 LRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFPGGAP 88 (201)
T ss_dssp EEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEECCGGGCCC-------CCSSCCCSSTTCCC
T ss_pred EEEEeCCCCEEEEEcCCCCcHHHHHHHHHHhcCccCCCEEEEeeCCCEEEcCcccccCCCCCCCCCccccccccccCCCc
Confidence 5677888999999999999999998 777889999987 455677776300 3332111111
Q ss_pred -------EEEEeCCeEEEEEecCCCCh--HHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011436 332 -------VILHTTMGDIHMKLYPEECP--KTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 332 -------~~~~t~~G~i~i~L~~~~aP--~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
.+-+...|.|-+--. .| .+.+-|+.+....+.|+ +.|-||+.|+
T Consensus 89 f~dE~~~~l~h~~~G~lsmA~~---gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gm 143 (201)
T 3bo7_A 89 FEDEFDNRLVHQGIGVLSMAND---GKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGL 143 (201)
T ss_dssp BCCCCCTTCCCCSTTEEEECCS---STTCBSSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred ccCcccCCCCcCCCcEEEEeeC---CCCCcccEEEEECCCCcccCCCceEEEEEecCH
Confidence 112334566654421 23 34456677666666664 7888888774
No 362
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*
Probab=77.88 E-value=0.059 Score=46.57 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=65.7
Q ss_pred eEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCC----------E---EEE
Q 011436 273 TLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPD----------N---VIL 334 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~----------~---~~~ 334 (485)
..|.|..++..|.||...+|++.+| .++++++|+.+. ....+++|. +++...+.+. . ..-
T Consensus 3 v~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQg--Gd~~~~g~gg~si~g~~~~dE~~~~l~ 80 (161)
T 2ok3_A 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQT--GDPTGTGRGGNSIWGKKFEDEYSEYLK 80 (161)
T ss_dssp EEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEE--CCTTSSSSCCCCTTSSCBCCCCCTTCC
T ss_pred EEEEeCCccEEEEEcCCCCcHHHHHHHHHhhhcccCCCEEEEEECCCEEec--CCCCCCCCCCCcccCCccccccCcCcC
Confidence 4567888999999999999999998 777889999977 355677776 4433222111 1 011
Q ss_pred EeCCeEEEEEecCCCChHHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011436 335 HTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 335 ~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
+...|.|-+--.+ .-..+.+-|+.+....+.|+ +.|-||+.|+
T Consensus 81 h~~~G~lsma~~g-p~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~ 125 (161)
T 2ok3_A 81 HNVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKVIDGL 125 (161)
T ss_dssp SCSTTEEEECCSS-TTCBCSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred cCCCeEEEEecCC-CCCcceEEEEEcCCCCccCCCEeEEEEEeCCH
Confidence 2345655543222 11123456777766666664 7899998774
No 363
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=76.70 E-value=45 Score=30.49 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=17.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCcE
Q 011436 124 DGKQFSITSPD-----RRIRVFWFRTGKL 147 (485)
Q Consensus 124 dg~~lat~s~D-----~~I~iwd~~tg~~ 147 (485)
+++.++.|+.+ ..+.+||+.+.+-
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 77788887754 4578888877653
No 364
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A
Probab=75.79 E-value=0.051 Score=47.20 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=68.3
Q ss_pred CCCeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCC----------E---
Q 011436 270 SDPTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPD----------N--- 331 (485)
Q Consensus 270 ~d~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~----------~--- 331 (485)
....+|-|..++..|.||...+|++++| .++++++|+.+. ....+++|. +++.....+. .
T Consensus 11 ~~~v~l~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~fhRvi~~f~iQg--Gd~~~~g~gg~si~g~~~~dE~~~ 88 (166)
T 2x7k_A 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQG--GDPTGTGRGGASIYGKQFEDELHP 88 (166)
T ss_dssp CSEEEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEE--CCTTSSSSCCCCTTSSCBCCCCCT
T ss_pred CCEEEEEeCCCcEEEEEccCCCCHHHHHHHHHHhcCCCCCCEEEEEECCCEEEc--CCCCCCCCCCCccCCCcccccccc
Confidence 3456788888999999999999999998 777889999876 355677776 3333221111 1
Q ss_pred EEEEeCCeEEEEEecCCCCh--HHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011436 332 VILHTTMGDIHMKLYPEECP--KTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 332 ~~~~t~~G~i~i~L~~~~aP--~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
..-++..|.|-+-= ..| .+.+-|+.+....+.|+ +.|-||+.|+
T Consensus 89 ~l~h~~~G~lsmAn---~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~ 136 (166)
T 2x7k_A 89 DLKFTGAGILAMAN---AGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136 (166)
T ss_dssp TSCCCSTTEEEECB---SSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred ccCCCCCeEEEEee---CCCCCccceEEEECCCCCccCCCeeEEEEEEcCH
Confidence 11123356665541 124 34466777776677665 7899998774
No 365
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=75.73 E-value=35 Score=34.33 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=38.1
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcCCCceEE----ee-----cCCccEEEEEEcCC----
Q 011436 59 PVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKSDTNLFE----IL-----KSKTTVSAIEVSPD---- 124 (485)
Q Consensus 59 ~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~----~~-----~~~~~v~~i~~spd---- 124 (485)
.-+.|+|.||++ .++.+...|.|++++........ .+.. +. ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~-----------~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n 83 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKE-----------PYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN 83 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSS-----------CSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeee-----------eecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence 457899999996 34445678999999753211110 1111 11 12345789999996
Q ss_pred CCEEEEEe
Q 011436 125 GKQFSITS 132 (485)
Q Consensus 125 g~~lat~s 132 (485)
+...++.+
T Consensus 84 ~~lYv~yt 91 (463)
T 2wg3_C 84 GKLYVSYT 91 (463)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 66666655
No 366
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=74.56 E-value=57 Score=30.61 Aligned_cols=63 Identities=11% Similarity=0.174 Sum_probs=36.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcE-EEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC
Q 011436 57 MGPVKVMRYNPVFDTVISADDKGII-EYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 135 (485)
Q Consensus 57 ~~~V~~l~fspd~~~l~s~s~dg~i-~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~ 135 (485)
...+..+.+.+++..++.+. ++.| +-+|-.. .|+. ........+.+++++|++++++.+....
T Consensus 121 ~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~--------tW~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~G~ 184 (327)
T 2xbg_A 121 PGSPRLIKALGNGSAEMITN-VGAIYRTKDSGK--------NWQA-------LVQEAIGVMRNLNRSPSGEYVAVSSRGS 184 (327)
T ss_dssp SSCEEEEEEEETTEEEEEET-TCCEEEESSTTS--------SEEE-------EECSCCCCEEEEEECTTSCEEEEETTSS
T ss_pred CCCeEEEEEECCCCEEEEeC-CccEEEEcCCCC--------CCEE-------eecCCCcceEEEEEcCCCcEEEEECCCc
Confidence 34577788877776666554 4544 4445311 1221 1223345688999999999887764433
No 367
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=74.50 E-value=74 Score=31.89 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=40.7
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecC----CCCeEEEEEcCCCCEEEEEe-------CCCcEEEEcCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVH----MGPVKVMRYNPVFDTVISAD-------DKGIIEYWSPH 87 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h----~~~V~~l~fspd~~~l~s~s-------~dg~i~~Wd~~ 87 (485)
+..-+|+ +..|+-|++. ++..|.+.+..| ...|..-+-+++.++++-.+ -.|.+.++..+
T Consensus 117 ~~l~lVT---~taVyHWsi~-~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 117 NTVALVT---DNAVYHWSME-GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp TEEEEEC---SSEEEEEESS-SSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred CeEEEEc---CCeeEEeccc-CCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 4444554 4789999997 356788888765 34677777889999776443 23566677554
No 368
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1
Probab=74.46 E-value=0.057 Score=48.14 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=68.2
Q ss_pred CCeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCC----------E---E
Q 011436 271 DPTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPD----------N---V 332 (485)
Q Consensus 271 d~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~----------~---~ 332 (485)
.-.+|-|..++..|.||...+|++++| .++++++|+.+. ....+++|. +++...+.+. . .
T Consensus 39 ~~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRVi~~f~iQg--Gd~~~~g~gg~si~g~~~~dE~~~~ 116 (196)
T 2b71_A 39 GYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQG--GDPTGTGKGGKSIYGEYFEDEINKE 116 (196)
T ss_dssp CEEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEE--EETTSSSSCCCBTTBSCBCCCCCTT
T ss_pred cEEEEEeCCCCEEEEEeCCCCcHHHHHHHHHhhcCCcCCCEEEEEeCCcEEEc--CCCCCCCCCCCccCCCcccccccCC
Confidence 346678888999999999999999998 777889999876 455677776 3332221111 1 1
Q ss_pred EEEeCCeEEEEEecCCCCh--HHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011436 333 ILHTTMGDIHMKLYPEECP--KTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 333 ~~~t~~G~i~i~L~~~~aP--~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
+-+...|.|-+-- .-| .+.+-|+.+....+.|+ +.|-||+.|+
T Consensus 117 l~h~~~G~lsMAn---~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gm 163 (196)
T 2b71_A 117 LKHTGAGILSMSN---NGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 163 (196)
T ss_dssp CCCCSTTEEEECC---SSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred cCcCCCeEEEEcc---CCCCCcccEEEEECCCCCccCCCEeEEEEEecCH
Confidence 1233466665541 224 34466777777677765 7899998774
No 369
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=74.30 E-value=22 Score=34.31 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=55.4
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEe----cCCCCeEEEEEcCC----CCEEEEEe--CCCcEEEEcCCCC--
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKK----VHMGPVKVMRYNPV----FDTVISAD--DKGIIEYWSPHTL-- 89 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~----~h~~~V~~l~fspd----~~~l~s~s--~dg~i~~Wd~~t~-- 89 (485)
.|++.++++....|.|++++...+....+..+. ........|+|+|+ +.+.++-+ .+..|.-|.....
T Consensus 40 ~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~ 119 (347)
T 3das_A 40 LPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKP 119 (347)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSC
T ss_pred cCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCc
Confidence 467789998866899999876411112222221 23456789999996 44555433 2333433433221
Q ss_pred ---CCCCceeEEEEcCCCceEEee-cCCccEEEEEEcCCCCEEEEEeC
Q 011436 90 ---QFPESEVSFRLKSDTNLFEIL-KSKTTVSAIEVSPDGKQFSITSP 133 (485)
Q Consensus 90 ---~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~i~~spdg~~lat~s~ 133 (485)
......+.+ ..+. ........|+|.|||.++++.+.
T Consensus 120 ~~~~~~~~~~i~--------~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 120 SGEQLGAPDTVF--------RGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp TTCCBCCCEEEE--------EEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred ccccCCCcEEEE--------EcCCCCCCccCccccCCCCCCEEEEECC
Confidence 111111111 1121 11122457999999998887654
No 370
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=72.68 E-value=0.079 Score=48.56 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=66.6
Q ss_pred CeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCC------------EE--
Q 011436 272 PTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPD------------NV-- 332 (485)
Q Consensus 272 ~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~------------~~-- 332 (485)
..+|-|..++..|.||...+|++++| .+++.++|+.+. ....+++|. +++...+.+. ..
T Consensus 23 ~V~l~T~~G~I~ieL~~d~aP~tv~NF~~L~~~g~Ydgt~FhRVi~~FmiQg--Gdp~~~G~Gg~si~~~g~~f~dE~~~ 100 (232)
T 3bkp_A 23 KVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQG--GDPTGTGRGGADTTFDGKPFDVETHP 100 (232)
T ss_dssp EEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHHTTTTTCBEEEEETTTEEEE--CCTTSSSSCCCCCTTTTCCBCCCCCT
T ss_pred EEEEEECCCcEEEEEcCCCCcHHHHHHHHHhhcCccCCCEEEEEeCCCEEEc--CCCCCCCCCCCccccCCCccCCcccc
Confidence 46778889999999999999999998 777889999987 456788887 4433222111 11
Q ss_pred -EEEeCCeEEEEEecCCC-------------ChHHHHHHHHhhhcCccCC--ceEEEEE
Q 011436 333 -ILHTTMGDIHMKLYPEE-------------CPKTVENFTTHCRNEYYNN--LIFHRVI 375 (485)
Q Consensus 333 -~~~t~~G~i~i~L~~~~-------------aP~~~~nF~~l~~~~~y~g--~~f~rv~ 375 (485)
+-+...|.|-+--.+.. -....+.|+.+....++|+ +.|-||+
T Consensus 101 ~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv 159 (232)
T 3bkp_A 101 RLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT 159 (232)
T ss_dssp TCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC
T ss_pred CcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE
Confidence 11234566655433321 1234566777766667665 7888886
No 371
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A
Probab=72.51 E-value=0.12 Score=44.82 Aligned_cols=105 Identities=17% Similarity=0.236 Sum_probs=65.6
Q ss_pred CeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCC----CC----CE--EEEEe
Q 011436 272 PTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTS----LP----DN--VILHT 336 (485)
Q Consensus 272 ~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~----~~----~~--~~~~t 336 (485)
-.+|-|..++..|.||...+|++++| .++++++|+.+. ....+++|. +++.... .. +. -.+..
T Consensus 6 ~v~~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQg--Gd~~~~~~~~~~g~~~~dE~~~~l~~ 83 (166)
T 1v9t_A 6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQG--GGFTEQMQQKKPNPPIKNEADNGLRN 83 (166)
T ss_dssp EEEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTCBEEEEETTTEEEE--SSBCTTCCBCCCCCCBCCCGGGSCCC
T ss_pred EEEEEeCCccEEEEEcCCCCcHHHHHHHHHhccCCCCCCEEEEEECCcEEEc--CCcCcCCCCCCCCCcccccccccccC
Confidence 35667888899999999999999998 777889999987 455677777 3322111 00 00 01223
Q ss_pred CCeEEEEEecCCCChHHHHHHHHhhhcCccC-------CceEEEEEeCc
Q 011436 337 TMGDIHMKLYPEECPKTVENFTTHCRNEYYN-------NLIFHRVIKGF 378 (485)
Q Consensus 337 ~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~-------g~~f~rv~~~~ 378 (485)
..|.|-+--...---.+.+-|+.+....+.| .+.|-||+.|+
T Consensus 84 ~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~ 132 (166)
T 1v9t_A 84 TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGM 132 (166)
T ss_dssp CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECH
T ss_pred CceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCH
Confidence 3566554322111123446677776666666 47888887764
No 372
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A
Probab=71.41 E-value=0.068 Score=47.26 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=67.3
Q ss_pred eEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCC----------CE---EEE
Q 011436 273 TLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLP----------DN---VIL 334 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~----------~~---~~~ 334 (485)
..|-|..++..|.||...+|++.+| .++++++|+.+. ....+++|. +++...+.+ ++ .+-
T Consensus 19 v~i~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQg--Gd~~~~g~gg~si~g~~~~dE~~~~l~ 96 (185)
T 2poe_A 19 VRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQG--GDPTGTGKGGESIYGRYFDDEIYPELK 96 (185)
T ss_dssp EEEEETTEEEEEEECTTTCHHHHHHHHHHHHTTTTTTEEEEEECTTSEEEE--EETTSSSSCCCBTTBSCBCCCCCTTSC
T ss_pred EEEEecCccEEEEEeCCCCcHHHHHHHHHhccCCCCCCEEEEEECCCEEEc--CCCCCCCCCCCccCCCcccccccCCCc
Confidence 5567888999999999999999998 777889999876 455677776 332221111 11 011
Q ss_pred EeCCeEEEEEecCC---CChHHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011436 335 HTTMGDIHMKLYPE---ECPKTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 335 ~t~~G~i~i~L~~~---~aP~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
+...|.|-+--.++ --..+.+-|+.+....+.|+ +.|-||+.|+
T Consensus 97 h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gm 145 (185)
T 2poe_A 97 YDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGF 145 (185)
T ss_dssp CCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred cCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCH
Confidence 23456665543321 12234567777777777765 7899998774
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.31 E-value=2.6 Score=47.93 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011436 115 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 115 ~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
.+.+++..++.+++.+-|.|+++||||+.+++|+.+.+-
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 345667788999999999999999999999999998753
No 374
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=70.91 E-value=1e+02 Score=32.03 Aligned_cols=102 Identities=9% Similarity=-0.056 Sum_probs=59.3
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEcCCCCCCCCceeEEEEcC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFD-TVISADDKGIIEYWSPHTLQFPESEVSFRLKS 102 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~-~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~~ 102 (485)
++.+.++....+.|+.+++. .......+...-.....+++.+.+. +..+-+..+.|.+-++... .
T Consensus 360 ~~~ly~sD~~~~~I~r~~~~--g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~----------- 425 (619)
T 3s94_A 360 EGYIYWTDDEVRAIRRSFID--GSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-M----------- 425 (619)
T ss_dssp TTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-S-----------
T ss_pred CCeEEEEeCCCCeEEEEEcC--CCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-e-----------
Confidence 45677776667788888875 2222222333334667899987555 5555556778888776531 1
Q ss_pred CCceEEe-ecCCccEEEEEEcCC-CCEEEEEeC-CCcEEEEEC
Q 011436 103 DTNLFEI-LKSKTTVSAIEVSPD-GKQFSITSP-DRRIRVFWF 142 (485)
Q Consensus 103 ~~~l~~~-~~~~~~v~~i~~spd-g~~lat~s~-D~~I~iwd~ 142 (485)
...+ ...-....+|++.|. |.++.|-.. ...|...++
T Consensus 426 ---~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~ 465 (619)
T 3s94_A 426 ---RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAAL 465 (619)
T ss_dssp ---CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ---EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEcc
Confidence 1112 223345899999996 666555422 345555554
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=70.78 E-value=6 Score=42.18 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=30.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011436 115 TVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 115 ~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
.|.++.+ +..++.+-|.|+++|+||+.+++++.+.+-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555444 478999999999999999999999998865
No 376
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=70.25 E-value=32 Score=34.45 Aligned_cols=103 Identities=11% Similarity=0.140 Sum_probs=54.1
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEec------CCCCeEEEEEcCC----CCEEEEEeC------------CC
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKV------HMGPVKVMRYNPV----FDTVISADD------------KG 79 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~------h~~~V~~l~fspd----~~~l~s~s~------------dg 79 (485)
.|++.++|+....+.|++++...+....+..+.. .......|+|+|+ +.+.++-+. ..
T Consensus 35 ~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~ 114 (454)
T 1cru_A 35 GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQT 114 (454)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEE
T ss_pred cCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcccccccc
Confidence 4678899987655578888754112222333321 2456779999995 445555442 11
Q ss_pred cEEEEcCCC--CCCCCceeEEEEcCCCceEE-eec-CCccEEEEEEcCCCCEEEEEeC
Q 011436 80 IIEYWSPHT--LQFPESEVSFRLKSDTNLFE-ILK-SKTTVSAIEVSPDGKQFSITSP 133 (485)
Q Consensus 80 ~i~~Wd~~t--~~~~~~~~~~~~~~~~~l~~-~~~-~~~~v~~i~~spdg~~lat~s~ 133 (485)
.|.-++... ..+.. .+.+.. +.. .......|+|.|||+++++.+.
T Consensus 115 ~v~r~~~~~~~~~~~~---------~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 115 IIRRYTYNKSTDTLEK---------PVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEEEEETTTTEEEE---------EEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEEEEEECCCCCCcCC---------cEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 233332211 11100 011111 211 1234689999999998887664
No 377
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=64.91 E-value=26 Score=32.29 Aligned_cols=24 Identities=13% Similarity=0.255 Sum_probs=17.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCcE
Q 011436 124 DGKQFSITSPD-----RRIRVFWFRTGKL 147 (485)
Q Consensus 124 dg~~lat~s~D-----~~I~iwd~~tg~~ 147 (485)
+++.++.|+.+ ..+.+||+.+.+-
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 67888888764 3688888877653
No 378
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=64.77 E-value=47 Score=31.15 Aligned_cols=67 Identities=4% Similarity=0.002 Sum_probs=40.9
Q ss_pred EEcCCCCEEEEEe--CCCcEEEE--cCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC-CCcEE
Q 011436 64 RYNPVFDTVISAD--DKGIIEYW--SPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP-DRRIR 138 (485)
Q Consensus 64 ~fspd~~~l~s~s--~dg~i~~W--d~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~-D~~I~ 138 (485)
.|+++++.|+=++ .++.-.|+ ++. ++....+..+.. .+|+|+|+.|.-.+. ...|.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d---------------Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy 170 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRID---------------GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLY 170 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETT---------------SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECC---------------CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEE
Confidence 6788888877665 45555555 433 223333444432 467889998875554 56788
Q ss_pred EEECCCCcEEE
Q 011436 139 VFWFRTGKLRR 149 (485)
Q Consensus 139 iwd~~tg~~~~ 149 (485)
+-++..+...+
T Consensus 171 ~~~l~g~~~~~ 181 (302)
T 3s25_A 171 RYDTASQSEAL 181 (302)
T ss_dssp EEETTTTEEEE
T ss_pred EEECCCCCEEE
Confidence 88876665433
No 379
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=63.39 E-value=44 Score=30.74 Aligned_cols=24 Identities=17% Similarity=0.262 Sum_probs=17.8
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCcE
Q 011436 124 DGKQFSITSPD------RRIRVFWFRTGKL 147 (485)
Q Consensus 124 dg~~lat~s~D------~~I~iwd~~tg~~ 147 (485)
+++.++.|+.+ ..+.+||+.+.+-
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 67788888765 4688888887653
No 380
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=63.37 E-value=10 Score=36.57 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=66.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecC-CCCeEEEEEc--C-CCCEEEEE-eCCCcEEEEcCCCCCCCCceeEE
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVH-MGPVKVMRYN--P-VFDTVISA-DDKGIIEYWSPHTLQFPESEVSF 98 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h-~~~V~~l~fs--p-d~~~l~s~-s~dg~i~~Wd~~t~~~~~~~~~~ 98 (485)
.+.++++ +.||.|.-.|.. +++.+.+++.. ..++....-. + ++..++.. ..||.+..++.+++. ..|
T Consensus 10 ~~~V~v~-t~dG~l~Ald~~--tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~-----~~~ 81 (339)
T 2be1_A 10 SDILIAA-DVEGGLHAVDRR--NGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL-----QKL 81 (339)
T ss_dssp EEEEEEE-ETTSCEEEEETT--TTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-----EEE
T ss_pred CCEEEEE-eCCCeEEEEECC--CCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-----EEe
Confidence 3444444 479999999987 78888888643 2333322111 1 22333333 578888888876642 112
Q ss_pred EEcCCCceEEeecCCccEEE---EEE-c----CCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 011436 99 RLKSDTNLFEILKSKTTVSA---IEV-S----PDGKQFSITSPDRRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 99 ~~~~~~~l~~~~~~~~~v~~---i~~-s----pdg~~lat~s~D~~I~iwd~~tg~~~~~~~~ 153 (485)
.+.... +. ..+++.. ..+ . .++..+.+|+.++.+.-.|+.+|+.++.+..
T Consensus 82 ~~~~~~----lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 82 PLSIRQ----LV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEEHHH----HH-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eecccc----ce-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 221110 00 1111110 001 0 1345778899999999999999999999853
No 381
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A
Probab=57.34 E-value=0.23 Score=42.96 Aligned_cols=102 Identities=18% Similarity=0.290 Sum_probs=63.6
Q ss_pred eEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccC--------CCCCEE--EEEeC
Q 011436 273 TLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTT--------SLPDNV--ILHTT 337 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~--------~~~~~~--~~~t~ 337 (485)
.+|.|..++..|.||...+|++++| .++++++|+.+. ....+++|. +++... .-.+.. .+.-.
T Consensus 2 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQg--Gd~~~~~g~~~~g~~~~dE~~~~l~~~ 79 (164)
T 1lop_A 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQG--GGFEPGMKQKATKEPIKNEANNGLKNT 79 (164)
T ss_dssp EEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEECCEEETTTEEEE--SSEETTTEECCCCCCBCCCCCSSCCCC
T ss_pred EEEEeCCCCEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCceEec--CCcccCCCcCCCCCccccccccccccC
Confidence 3577888999999999999999998 777888999876 455677776 332210 000110 01123
Q ss_pred CeEEEEEecCCCCh--HHHHHHHHhhhcCccC----------CceEEEEEeCc
Q 011436 338 MGDIHMKLYPEECP--KTVENFTTHCRNEYYN----------NLIFHRVIKGF 378 (485)
Q Consensus 338 ~G~i~i~L~~~~aP--~~~~nF~~l~~~~~y~----------g~~f~rv~~~~ 378 (485)
.|.|-+--. ..| .+.+-|+.+....+.| .+.|-||+.|+
T Consensus 80 ~G~lsmA~~--~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~ 130 (164)
T 1lop_A 80 RGTLAMART--QAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGM 130 (164)
T ss_dssp TTEEEECCC--SSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECH
T ss_pred ccEEEEeec--CCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCH
Confidence 566554321 123 3446677776666655 36788887764
No 382
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=57.16 E-value=1.8e+02 Score=29.97 Aligned_cols=43 Identities=14% Similarity=0.056 Sum_probs=30.4
Q ss_pred cCCccEEEEEEcCC--CCEEEEEeCC----CcEEEEECCCCcEEEEecc
Q 011436 111 KSKTTVSAIEVSPD--GKQFSITSPD----RRIRVFWFRTGKLRRVYDE 153 (485)
Q Consensus 111 ~~~~~v~~i~~spd--g~~lat~s~D----~~I~iwd~~tg~~~~~~~~ 153 (485)
+|...+.-..|.|+ |..+..+.++ .-..+.|..+|+.++.+..
T Consensus 361 gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 361 GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYA 409 (591)
T ss_dssp CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECC
T ss_pred CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCC
Confidence 67777777788887 4455554444 1456789999999988754
No 383
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.69 E-value=31 Score=38.29 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=30.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCC
Q 011436 59 PVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPE 93 (485)
Q Consensus 59 ~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~ 93 (485)
.|.+++..++..++.+-+.|+++|+|++.++++..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 56778888888999999999999999999876653
No 384
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*
Probab=56.12 E-value=0.15 Score=44.33 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=63.5
Q ss_pred eEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccC----CC----CCE--EEEEeC
Q 011436 273 TLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTT----SL----PDN--VILHTT 337 (485)
Q Consensus 273 ~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~----~~----~~~--~~~~t~ 337 (485)
..|.|..++..|.||...+|++.+| .++++++|+... ....+++|. ++.... .. .+. -.+.-.
T Consensus 6 v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Y~g~~FhRvi~~f~iQg--Gd~~~~~~~~~~~~~~~~E~~~~l~~~ 83 (167)
T 3s6m_A 6 VELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQG--GGFEPGLKQKPTDAPIANEANNGLKND 83 (167)
T ss_dssp EEEEETTEEEEEEECTTTCHHHHHHHHHHHHHTTTTTEECCEEETTTEEEE--SSEETTTEECCCCCCBCCCGGGCCCCC
T ss_pred EEEEeCCceEEEEEeCCCCcHHHHHHHHHhhhcccCCCEeEEecCCcEEEe--ccccCCCCCCCCCCccCCcccccccCC
Confidence 4677888999999999999999998 777889999876 445677766 332211 00 000 011123
Q ss_pred CeEEEEEecCCCChHHHHHHHHhhhcCccC----------CceEEEEEeCc
Q 011436 338 MGDIHMKLYPEECPKTVENFTTHCRNEYYN----------NLIFHRVIKGF 378 (485)
Q Consensus 338 ~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~----------g~~f~rv~~~~ 378 (485)
.|.|-+--...---...+-|+.+....+.| .+.|-||+.|+
T Consensus 84 ~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~ 134 (167)
T 3s6m_A 84 TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQ 134 (167)
T ss_dssp TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECH
T ss_pred ccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCH
Confidence 455554432111113345666666666655 47888888764
No 385
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=55.38 E-value=26 Score=32.23 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=17.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCc
Q 011436 124 DGKQFSITSPD-----RRIRVFWFRTGK 146 (485)
Q Consensus 124 dg~~lat~s~D-----~~I~iwd~~tg~ 146 (485)
+++.++.|+.+ ..|.+||+++.+
T Consensus 253 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 253 RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 67788888765 457888888765
No 386
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=52.92 E-value=62 Score=37.51 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=40.2
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecC----CCCeEEEEEcCCCCEEEEEe-------CCCcEEEEcCC
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVH----MGPVKVMRYNPVFDTVISAD-------DKGIIEYWSPH 87 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h----~~~V~~l~fspd~~~l~s~s-------~dg~i~~Wd~~ 87 (485)
+..-+|| +..|.-|++. ++..|.+.+..| ...|..-+-+++.++++-.+ ..|.+.++..+
T Consensus 117 ~~l~lVT---~~aVyHW~~~-~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 117 NTVALVT---DNAVYHWSME-GESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred CeeEEEc---CCeEEEeccC-CCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 4455555 4689999996 355676666655 45677777888888776443 33667777554
No 387
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=52.17 E-value=33 Score=31.51 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=17.4
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCc
Q 011436 124 DGKQFSITSPDR-----RIRVFWFRTGK 146 (485)
Q Consensus 124 dg~~lat~s~D~-----~I~iwd~~tg~ 146 (485)
+++.++.|+.++ .+.+||+.+.+
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 778888887653 48888888765
No 388
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=51.42 E-value=1.4e+02 Score=27.08 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=16.1
Q ss_pred CCCEEEEEeC---------CCcEEEEECCCCc
Q 011436 124 DGKQFSITSP---------DRRIRVFWFRTGK 146 (485)
Q Consensus 124 dg~~lat~s~---------D~~I~iwd~~tg~ 146 (485)
+++.++.|+. -..+.+||+.+.+
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 6777777764 3457888887765
No 389
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=50.21 E-value=1.2e+02 Score=34.21 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=30.1
Q ss_pred ccEEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCcEEEE
Q 011436 114 TTVSAIEVSPD------GKQFSITSP-DRRIRVFWFRTGKLRRV 150 (485)
Q Consensus 114 ~~v~~i~~spd------g~~lat~s~-D~~I~iwd~~tg~~~~~ 150 (485)
..|.|+++.|. +.++|.|+. |++|+|+++.+.+.+..
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~ 597 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK 597 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE
Confidence 46999999874 479999996 99999999988766543
No 390
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=47.67 E-value=44 Score=30.97 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=45.3
Q ss_pred CeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEcCCCCCCCCceeEEEEcCCCceEEe
Q 011436 35 SFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKG-----IIEYWSPHTLQFPESEVSFRLKSDTNLFEI 109 (485)
Q Consensus 35 ~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg-----~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~ 109 (485)
..+.+||....+-+.+..+......-.++.+ ++++++.++.++ .+.++|+.+. .|..... +
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-------~W~~~~~-----~ 230 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN-------KWAPFEA-----F 230 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT-------EEEEECC-----C
T ss_pred ceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC-------eEEECCC-----C
Confidence 4688888762211112112111111122222 567777777554 3566677652 2322111 1
Q ss_pred ecCCccEEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCc
Q 011436 110 LKSKTTVSAIEVSPDGKQFSITSPDR--------------RIRVFWFRTGK 146 (485)
Q Consensus 110 ~~~~~~v~~i~~spdg~~lat~s~D~--------------~I~iwd~~tg~ 146 (485)
........++.+ +++.++.|+.++ .+.+||+.+.+
T Consensus 231 p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 231 PQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp SSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred CCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 111111122333 677888887642 36778887765
No 391
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=47.28 E-value=45 Score=34.53 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 011436 116 VSAIEVSPDGKQFSITSP-DRRIRVFWFRT 144 (485)
Q Consensus 116 v~~i~~spdg~~lat~s~-D~~I~iwd~~t 144 (485)
...+.++|||++++.++. +.++.++|++.
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k 354 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDK 354 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeeh
Confidence 356889999999988874 88999999863
No 392
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=46.88 E-value=74 Score=32.97 Aligned_cols=82 Identities=6% Similarity=-0.079 Sum_probs=49.8
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEcCCCCCCC-CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCCcE
Q 011436 60 VKVMRYNPVFDTVISAD-DKGIIEYWSPHTLQFP-ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDRRI 137 (485)
Q Consensus 60 V~~l~fspd~~~l~s~s-~dg~i~~Wd~~t~~~~-~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~~I 137 (485)
...+..+|||++++.++ .+.++-+.|.+...-. ...+ ++....+..-..-.......+|.++|.-..|---|..|
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~---~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKL---ADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCC---SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccc---cCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence 36788999999887766 6788888876531100 0000 00001111111122347889999999655666689999
Q ss_pred EEEECCC
Q 011436 138 RVFWFRT 144 (485)
Q Consensus 138 ~iwd~~t 144 (485)
--|++..
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999864
No 393
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=46.87 E-value=2.8e+02 Score=29.16 Aligned_cols=184 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCcceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEEcCCCCCCCCceeEEEEc
Q 011436 22 DVKAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYWSPHTLQFPESEVSFRLK 101 (485)
Q Consensus 22 ~~~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~Wd~~t~~~~~~~~~~~~~ 101 (485)
+.++.+-++. +.-+..||.. +.............|.++.. .++.+.+.... .+..+|..+.+
T Consensus 71 d~~g~lWigT--~~Gl~~yd~~--~~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~--Gl~~~~~~~~~----------- 132 (758)
T 3ott_A 71 IDNTYLYMGT--DNGILVYNYR--ADRYEQPETDFPTDVRTMAL-QGDTLWLGALN--GLYTYQLQSRK----------- 132 (758)
T ss_dssp ETTTEEEEEE--TTEEEEEETT--TTEECCCSCCCCSCEEEEEE-ETTEEEEEETT--EEEEEETTTCC-----------
T ss_pred cCCCcEEEEe--CCCeEEEeCC--CCEEECcccCCCceEEEEEe-cCCcEEEEcCC--cceeEeCCCCe-----------
Q ss_pred CCCceEEeecC--------CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEeccchhHHHhhhcCCCccccccc
Q 011436 102 SDTNLFEILKS--------KTTVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEA 173 (485)
Q Consensus 102 ~~~~l~~~~~~--------~~~v~~i~~spdg~~lat~s~D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 173 (485)
+... ...|.++...++|...+ +.++.+..||..+++.............
T Consensus 133 -------~~~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~~Gl~~~~~~~~~~~~~~~~~~~~~~-------------- 189 (758)
T 3ott_A 133 -------LTSFDTRRNGLPNNTIYSIIRTKDNQIYV--GTYNGLCRYIPSNGKFEGIPLPVHSSQS-------------- 189 (758)
T ss_dssp -------EEEECHHHHCCSCSCEEEEEECTTCCEEE--EETTEEEEEETTTTEEEEECCCCCTTCS--------------
T ss_pred -------EEEeccCCCCcCCCeEEEEEEcCCCCEEE--EeCCCHhhCccCCCceEEecCCCccccc--------------
Q ss_pred ccccchhhhhHhhhccCCCCCceEEECCCCCEEEEecCCCeEEEEcccCeEEEeecccCCccceeeeeeccCCccCccee
Q 011436 174 IDFGRRMAVEKEIEKTETAPPSNAIFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKKVR 253 (485)
Q Consensus 174 ~~~g~~~~~~~~i~~~~~~~~~~i~fd~~g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~~~~r~~~~s~~~~~~~~~~~~ 253 (485)
...+.++..|++|+.|-.++..|+..+|..+++...........++ +++..
T Consensus 190 -----------------~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~----~i~~d-------- 240 (758)
T 3ott_A 190 -----------------NLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIK----SLALD-------- 240 (758)
T ss_dssp -----------------SCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEE----EEEEC--------
T ss_pred -----------------cceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEE----EEEEc--------
Q ss_pred eeeccccccccCCCCCCCCeEEEeeecCceEEEEecCCCC
Q 011436 254 KIPAAAANANESKEPFSDPTLLCCAFKRHRIYLFSRREPE 293 (485)
Q Consensus 254 ~~~~~~~~~~~~~~~~~d~~l~~s~~~d~~i~~f~~~~~~ 293 (485)
.++.+.+.. +.=+++++....+
T Consensus 241 ----------------~~g~lWigT--~~Gl~~~~~~~~~ 262 (758)
T 3ott_A 241 ----------------GNGDLLAGT--DNGLYVYHNDTTP 262 (758)
T ss_dssp ----------------TTCCEEEEE--TTEEEEECCTTSC
T ss_pred ----------------CCCCEEEEe--CCceeEEecCCCc
No 394
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.69 E-value=2.7e+02 Score=28.74 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhhh
Q 011436 115 TVSAIEVSPDGKQFSITSPD------------RRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAV 182 (485)
Q Consensus 115 ~v~~i~~spdg~~lat~s~D------------~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 182 (485)
..--|+|+|+|.+++.--.+ ..+.+.+..+|++.+.+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~----------------------------- 527 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG----------------------------- 527 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-----------------------------
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-----------------------------
Confidence 45779999999966543221 1345556666666544421
Q ss_pred hHhhhccCCCCCceEEECCCCCEEEEe
Q 011436 183 EKEIEKTETAPPSNAIFDESSNFLIYA 209 (485)
Q Consensus 183 ~~~i~~~~~~~~~~i~fd~~g~~l~~~ 209 (485)
+....++.++|+|||+.|.+.
T Consensus 528 ------P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 528 ------PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp ------CTTCEEEEEEECTTSSEEEEE
T ss_pred ------CCCccCcCeeECCCCCEEEEE
Confidence 122334688999999977554
No 395
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=45.63 E-value=1.2e+02 Score=32.15 Aligned_cols=71 Identities=11% Similarity=0.198 Sum_probs=39.1
Q ss_pred CCCCEEEEEeCCC--cEEEEcCCCCCCCCceeEEEEcCCCceEEeecCCccEEEEEEcCC-CCEEEEEeC--C-----Cc
Q 011436 67 PVFDTVISADDKG--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPD-GKQFSITSP--D-----RR 136 (485)
Q Consensus 67 pd~~~l~s~s~dg--~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spd-g~~lat~s~--D-----~~ 136 (485)
.++.+++.|+.++ .+.+||+.+. .|....... .+........++.+..+ ++.++.||. + ..
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~-------~W~~~~~~g--~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~ 569 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEE-------IFKDVTPKD--EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK 569 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTT-------EEEECCCSS--GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred cCCEEEEECCCCCCCCEEEEECCCC-------ceEEccCCC--CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence 4788888887654 6777887653 233211100 01111111233555655 777788875 2 35
Q ss_pred EEEEECCCCc
Q 011436 137 IRVFWFRTGK 146 (485)
Q Consensus 137 I~iwd~~tg~ 146 (485)
+.+||+.+.+
T Consensus 570 v~~yd~~~~~ 579 (695)
T 2zwa_A 570 AIIFKYDAEN 579 (695)
T ss_dssp EEEEEECTTC
T ss_pred EEEEEccCCc
Confidence 8888888776
No 396
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=45.10 E-value=2 Score=42.07 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=60.1
Q ss_pred ecCceEEEEecCCCCCCCc--cCCCc--------c---ccCCCC---CcccccccccCCCCc-cCCCCCE----------
Q 011436 279 FKRHRIYLFSRREPEEPED--ATKGR--------D---IFNEKP---PPDELLAVSDIGNSV-TTSLPDN---------- 331 (485)
Q Consensus 279 ~~d~~i~~f~~~~~~~~~~--~~~~r--------d---~~n~~p---~~e~~~~~~~~~~~~-~~~~~~~---------- 331 (485)
.++..|.||...+|++++| .+++. + .|+.+. ....++++. +++. ..++++.
T Consensus 29 ~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~--Gd~~~~~g~g~~~~~~~~~~~e 106 (370)
T 1ihg_A 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQG--GDFSNQNGTGGESIYGEKFEDE 106 (370)
T ss_dssp EEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEE--CCTTTSSSSCCCBTTBSCBCCC
T ss_pred cccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEEC--CCCCCCCCCCCCCCCCCCcCCC
Confidence 5789999999999999998 33322 3 588876 566788887 4433 2222111
Q ss_pred --EEEEeCCeEEEEEecCCCChHHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011436 332 --VILHTTMGDIHMKLYPEECPKTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 332 --~~~~t~~G~i~i~L~~~~aP~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
...++..|.|.+--.+ --..+.+.|+.+....+.|| +.|.||+.|.
T Consensus 107 ~~~~~~~~~g~l~ma~~~-~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~ 156 (370)
T 1ihg_A 107 NFHYKHDKEGLLSMANAG-SNTNGSQFFITTVPTPHLDGKHVVFGQVIKGM 156 (370)
T ss_dssp CCCBCCCSTTEEEECCSS-TTCBCSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred cCCcCCCCCeEEEEeeCC-CCCCCceEEEeCCCCcccCCCceEEEEEecCH
Confidence 1223445666654332 11234466777777677765 7899998774
No 397
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=40.89 E-value=2.2e+02 Score=26.32 Aligned_cols=30 Identities=7% Similarity=0.091 Sum_probs=19.4
Q ss_pred EECCCCCEEEEecC--CCeEEEEcccCeEEEe
Q 011436 198 IFDESSNFLIYATL--LGIKIVNLHTNKVSRI 227 (485)
Q Consensus 198 ~fd~~g~~l~~~s~--~~i~v~d~~tg~~v~~ 227 (485)
+|+++|+.|...+. ..|.+.++..+...+.
T Consensus 151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp CSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred EeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 35778888887765 2377777766554333
No 398
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=40.14 E-value=61 Score=29.86 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=16.6
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCc
Q 011436 124 DGKQFSITSPD-----RRIRVFWFRTGK 146 (485)
Q Consensus 124 dg~~lat~s~D-----~~I~iwd~~tg~ 146 (485)
+++.++.|+.+ ..+.+||+.+.+
T Consensus 262 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 262 QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 67788888754 457788887765
No 399
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=39.32 E-value=3e+02 Score=27.34 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=54.2
Q ss_pred CCcc--eEEEEeCCCCeEEEEEcCCC-CCcceEEEe-----c----CCCCeEEEEEcCC----CCEEEEEeCC--C----
Q 011436 22 DVKA--GLAISDRNSSFVHIYDARAD-SNEPLISKK-----V----HMGPVKVMRYNPV----FDTVISADDK--G---- 79 (485)
Q Consensus 22 ~~~~--~l~vs~s~d~~I~iwd~~~~-~~~~~~~l~-----~----h~~~V~~l~fspd----~~~l~s~s~d--g---- 79 (485)
.|++ +++|+. ..|.|++++.... ...++..+. + .......|+|+|+ +.+.++-+.+ +
T Consensus 22 ~pdG~~rl~V~e-r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~ 100 (463)
T 2wg3_C 22 SGDGSQRLFILE-KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIG 100 (463)
T ss_dssp CSSSSCCEEEEE-TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSS
T ss_pred CCCCCeEEEEEe-CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccC
Confidence 3455 488876 5789999975311 112333332 1 1356789999997 4555554421 1
Q ss_pred ------cEEEEcCCCC---CC-C-CceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeCCC
Q 011436 80 ------IIEYWSPHTL---QF-P-ESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSPDR 135 (485)
Q Consensus 80 ------~i~~Wd~~t~---~~-~-~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~D~ 135 (485)
.|.-|..... .. + ...+.++.. ..........|+|.|||.++++.+..+
T Consensus 101 ~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~-------~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 101 PHDHILRVVEYTVSRKNPHQVDLRTARVFLEVA-------ELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp SSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEE-------ESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CcccceEEEEEEEcCCCCCccCCCCceEEEEcC-------CCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 2222322211 11 0 111112211 011122357899999999888877544
No 400
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=38.69 E-value=1.3 Score=43.19 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=35.9
Q ss_pred ecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCc
Q 011436 279 FKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSV 324 (485)
Q Consensus 279 ~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~ 324 (485)
.++..|.||...+|++.+| .++++++|+.++ . ..+++|. +++.
T Consensus 187 ~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQg--GDp~ 234 (369)
T 3rfy_A 187 DCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQT--GDPE 234 (369)
T ss_dssp EEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECC--CCCC
T ss_pred ceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEec--CCCC
Confidence 6889999999999999998 777899999976 5 7788887 4443
No 401
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=37.62 E-value=56 Score=30.10 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=17.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCc
Q 011436 124 DGKQFSITSPD-----RRIRVFWFRTGK 146 (485)
Q Consensus 124 dg~~lat~s~D-----~~I~iwd~~tg~ 146 (485)
+++.++.|+.+ ..+.+||+.+.+
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 67788888764 568888887765
No 402
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=37.24 E-value=3.7e+02 Score=30.36 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=58.4
Q ss_pred cceEEEEeCCCCeEEEEEcCCCCCcceEEEecCCCCeEEEEEcCCCCEEEEEeCCCcEEEE--cCCCCCCCCceeEEEEc
Q 011436 24 KAGLAISDRNSSFVHIYDARADSNEPLISKKVHMGPVKVMRYNPVFDTVISADDKGIIEYW--SPHTLQFPESEVSFRLK 101 (485)
Q Consensus 24 ~~~l~vs~s~d~~I~iwd~~~~~~~~~~~l~~h~~~V~~l~fspd~~~l~s~s~dg~i~~W--d~~t~~~~~~~~~~~~~ 101 (485)
+++++++-+ ++|++||+. ..+.++.-..+-..|..+.....+++++.|+.-..+.+. +..
T Consensus 895 ~g~Lla~ig--~~l~vy~l~--~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~-------------- 956 (1158)
T 3ei3_A 895 NGKLLASIN--STVRLYEWT--TEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM-------------- 956 (1158)
T ss_dssp TTEEEEEET--TEEEEEEEC--TTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT--------------
T ss_pred CCEEEEEcC--CEEEEEECC--CCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC--------------
Confidence 456777653 789999996 333344111122223333333457788888877776654 222
Q ss_pred CCCceEEeec--CCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011436 102 SDTNLFEILK--SKTTVSAIEVSPDGKQFSITSPDRRIRVFWFR 143 (485)
Q Consensus 102 ~~~~l~~~~~--~~~~v~~i~~spdg~~lat~s~D~~I~iwd~~ 143 (485)
...+..+.+ +...++++.|--++ .++.+-.++.+.+....
T Consensus 957 -~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~ 998 (1158)
T 3ei3_A 957 -EGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKD 998 (1158)
T ss_dssp -TTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEEC
T ss_pred -CCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecC
Confidence 223333433 34567888876554 56667888888887653
No 403
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1
Probab=36.48 E-value=3.4 Score=36.58 Aligned_cols=102 Identities=20% Similarity=0.244 Sum_probs=63.3
Q ss_pred CeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---CcccccccccCCCCccCCCCCEE-------------E
Q 011436 272 PTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVSDIGNSVTTSLPDNV-------------I 333 (485)
Q Consensus 272 ~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~~~~~~~~~~~~~~~-------------~ 333 (485)
-.+|.|..++..|.||...+|++++| .++++++|+.+. ....+++|. +++...+.+... .
T Consensus 21 ~v~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Ydg~~FhRVi~~f~iQg--Gd~~~~g~Gg~si~g~~f~dE~~~~l 98 (197)
T 1zkc_A 21 YVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQG--GDPTGTGTGGESYWGKPFKDEFRPNL 98 (197)
T ss_dssp EEEEEETTEEEEEEECTTTSHHHHHHHHHHHHTTTTTTEEEEEEETTTEEEE--CCTTSSSSCCCBTTBSCBCCCCCTTC
T ss_pred EEEEEeCCccEEEEEcCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCCEEEc--CCCCCCCCCCCccCCCccccccCcCc
Confidence 46678889999999999999999998 777889999977 455677777 443322221110 1
Q ss_pred EEeCCeEEEEEecCCCCh--HHHHHHHHhhhcCccCC--ceEEEEEeCc
Q 011436 334 LHTTMGDIHMKLYPEECP--KTVENFTTHCRNEYYNN--LIFHRVIKGF 378 (485)
Q Consensus 334 ~~t~~G~i~i~L~~~~aP--~~~~nF~~l~~~~~y~g--~~f~rv~~~~ 378 (485)
.+...|.|-+--. .| .+.+-|+.+....++|+ +.|-||+.|+
T Consensus 99 ~h~~~G~lsMAn~---gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gm 144 (197)
T 1zkc_A 99 SHTGRGILSMANS---GPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGF 144 (197)
T ss_dssp CSCSTTEEEECCS---STTCBCSCEEEESSCCGGGTTTSCEEEEEEECH
T ss_pred CCCCceEEEEecC---CCCCcccEEEEEcCCCCccCCCccEEEEEEcCH
Confidence 1223454443311 23 23345555555555554 6777776663
No 404
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}
Probab=34.89 E-value=4 Score=35.78 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=39.3
Q ss_pred CeEEEeeecCceEEEEecCCCCCCCc--cCCCccccCCCC---Ccccccccc
Q 011436 272 PTLLCCAFKRHRIYLFSRREPEEPED--ATKGRDIFNEKP---PPDELLAVS 318 (485)
Q Consensus 272 ~~l~~s~~~d~~i~~f~~~~~~~~~~--~~~~rd~~n~~p---~~e~~~~~~ 318 (485)
-.+|-|..++..|.||...+|++++| .++++++|+.+. ....+++|.
T Consensus 26 ~V~l~T~~G~I~ieL~~~~aP~tv~NF~~L~~~g~Y~g~~FhRvi~~f~iQg 77 (185)
T 2hq6_A 26 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQG 77 (185)
T ss_dssp EEEEEETTEEEEEEEBTTTCHHHHHHHHHHHHTTTTTTEECCEEETTTEEEE
T ss_pred EEEEEeCCccEEEEEeCCCCcHHHHHHHHHhhcCccCCCEEEEEECCCEEEc
Confidence 46778888999999999999999998 777889999876 455677777
No 405
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=32.66 E-value=4.3e+02 Score=27.16 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=30.2
Q ss_pred CCCceEEECCC-CCEEEEecCCCeEEEEcccCeEEEeecccC
Q 011436 192 APPSNAIFDES-SNFLIYATLLGIKIVNLHTNKVSRILGKVE 232 (485)
Q Consensus 192 ~~~~~i~fd~~-g~~l~~~s~~~i~v~d~~tg~~v~~~~~~~ 232 (485)
..++++.+++. +++|+++-...|-.+|- +|+++.+++++.
T Consensus 355 ~HiNsv~~d~~dd~~liSsR~~~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 355 AHVNSIAYDAKDDSIILSSRHQGVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp CCEEEEEEETTTTEEEEEETTTEEEEEET-TSCEEEEESCST
T ss_pred cEecceeEcCCCCEEEEECCccEEEEEcC-CCcEEEEECCCC
Confidence 34689999984 56777776556555575 899999999876
No 406
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=31.92 E-value=1.1e+02 Score=28.18 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=16.7
Q ss_pred CCCEEEEEeCC--------------CcEEEEECCCCcE
Q 011436 124 DGKQFSITSPD--------------RRIRVFWFRTGKL 147 (485)
Q Consensus 124 dg~~lat~s~D--------------~~I~iwd~~tg~~ 147 (485)
+++.++.|+.+ ..+.+||+.+.+=
T Consensus 253 ~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 290 (318)
T 2woz_A 253 AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290 (318)
T ss_dssp TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEE
T ss_pred CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEe
Confidence 67777887754 3577888877653
No 407
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=31.68 E-value=91 Score=32.37 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCEEEEEeCCC----------cEEEE--cCCCCCCCCceeEEEEcCCCceEEee-c-CCccEEEEEEcCCC
Q 011436 60 VKVMRYNPVFDTVISADDKG----------IIEYW--SPHTLQFPESEVSFRLKSDTNLFEIL-K-SKTTVSAIEVSPDG 125 (485)
Q Consensus 60 V~~l~fspd~~~l~s~s~dg----------~i~~W--d~~t~~~~~~~~~~~~~~~~~l~~~~-~-~~~~v~~i~~spdg 125 (485)
.--|+|+|.|.+++.-+.+. .-.+| +..++ .++.|. + ..+.++.++|+||+
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g---------------~~~rf~~~P~gaE~TG~~fspDg 542 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG---------------EIRRFMVGPIGCEVTGISFSPDQ 542 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC---------------CEEEEEECCTTCEEEEEEECTTS
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC---------------eEEEEEeCCCCccCcCeeECCCC
Confidence 46789999999777665432 12233 33332 233332 2 23678999999999
Q ss_pred CEEEEE
Q 011436 126 KQFSIT 131 (485)
Q Consensus 126 ~~lat~ 131 (485)
+.|...
T Consensus 543 ~tlfvn 548 (592)
T 3zwu_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 877554
No 408
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=29.58 E-value=16 Score=19.76 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.4
Q ss_pred HHHHHHhhhcCccCCc
Q 011436 354 VENFTTHCRNEYYNNL 369 (485)
Q Consensus 354 ~~nF~~l~~~~~y~g~ 369 (485)
-.||-.-.+.|||||-
T Consensus 3 wknfwsslrkgfydge 18 (26)
T 2khf_A 3 WKNFWSSLRKGFYDGE 18 (26)
T ss_dssp HHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHhhcccch
Confidence 4689888999999984
No 409
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.58 E-value=1.6e+02 Score=30.53 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=38.7
Q ss_pred ccEEEEEEcCCCCEEE-EEeC-----------CCcEEEEECCCCcEEEEeccchhHHHhhhcCCCcccccccccccchhh
Q 011436 114 TTVSAIEVSPDGKQFS-ITSP-----------DRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMA 181 (485)
Q Consensus 114 ~~v~~i~~spdg~~la-t~s~-----------D~~I~iwd~~tg~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 181 (485)
.....|+|+++|.+.. |=.. ...+..++..+|++.+.+..
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~---------------------------- 527 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG---------------------------- 527 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC----------------------------
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC----------------------------
Confidence 4578899999999777 3111 11466667767776544321
Q ss_pred hhHhhhccCCCCCceEEECCCCCEEEEe
Q 011436 182 VEKEIEKTETAPPSNAIFDESSNFLIYA 209 (485)
Q Consensus 182 ~~~~i~~~~~~~~~~i~fd~~g~~l~~~ 209 (485)
......+.++|+||+++|.++
T Consensus 528 -------P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 528 -------PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp -------CTTCEEEEEEECTTSSEEEEE
T ss_pred -------CCCccccCCEECCCCCEEEEE
Confidence 011123689999999987666
No 410
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=27.24 E-value=1.2e+02 Score=28.49 Aligned_cols=19 Identities=5% Similarity=-0.190 Sum_probs=12.0
Q ss_pred ceEEEEeCCCCeEEEEEcC
Q 011436 25 AGLAISDRNSSFVHIYDAR 43 (485)
Q Consensus 25 ~~l~vs~s~d~~I~iwd~~ 43 (485)
..+++.|.....+.+||..
T Consensus 21 ~iyv~GG~~~~~~~~~d~~ 39 (357)
T 2uvk_A 21 TVYIGLGSAGTAWYKLDTQ 39 (357)
T ss_dssp EEEEECGGGTTCEEEEETT
T ss_pred EEEEEeCcCCCeEEEEccc
Confidence 3344444445678899985
No 411
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=25.43 E-value=2.2e+02 Score=29.47 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCC----------C--cEEEEcCCCCCCCCceeEEEEcCCCceEEeec--CCccEEEEEEcC
Q 011436 58 GPVKVMRYNPVFDTVISADDK----------G--IIEYWSPHTLQFPESEVSFRLKSDTNLFEILK--SKTTVSAIEVSP 123 (485)
Q Consensus 58 ~~V~~l~fspd~~~l~s~s~d----------g--~i~~Wd~~t~~~~~~~~~~~~~~~~~l~~~~~--~~~~v~~i~~sp 123 (485)
.....|.|.++|.+.+.-+.. + .+...+..++ .+..+.. ....++.++|||
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG---------------el~~fl~~P~~aEpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG---------------EIRRFMVGPIGCEVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC---------------CEEEEEECCTTCEEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC---------------eEEEEEeCCCCccccCCEECC
Confidence 345678899988877743321 0 2222243332 2333332 235689999999
Q ss_pred CCCEEEEEe
Q 011436 124 DGKQFSITS 132 (485)
Q Consensus 124 dg~~lat~s 132 (485)
|++.|.+.-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999876653
No 412
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=25.20 E-value=59 Score=36.78 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=29.7
Q ss_pred ceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeec
Q 011436 195 SNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILG 229 (485)
Q Consensus 195 ~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~ 229 (485)
.+++..++.+||++-|.+. +|+|++.+|+|+.+..
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4566677889999999887 9999999999998864
No 413
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=24.06 E-value=1.5e+02 Score=31.36 Aligned_cols=118 Identities=9% Similarity=0.031 Sum_probs=54.3
Q ss_pred cceEEEEeCCCC--eEEEEEcCCCCCcceEE---EecCCCCeEEEEEcCC-CCEEEEEeC--C-----CcEEEEcCCCCC
Q 011436 24 KAGLAISDRNSS--FVHIYDARADSNEPLIS---KKVHMGPVKVMRYNPV-FDTVISADD--K-----GIIEYWSPHTLQ 90 (485)
Q Consensus 24 ~~~l~vs~s~d~--~I~iwd~~~~~~~~~~~---l~~h~~~V~~l~fspd-~~~l~s~s~--d-----g~i~~Wd~~t~~ 90 (485)
++.+.+.|+.++ .+.+||.....-..+.. +......-.++.+..+ +.+++.|+. + ..+.+||+.+..
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 344555554332 68888886221111111 1111112233555655 566677664 2 246666776543
Q ss_pred CCCceeEEEEcCCCceEEeecCCccEEEEEEcCCCCEEEEEeC--------CCcEEEEECCCCcE
Q 011436 91 FPESEVSFRLKSDTNLFEILKSKTTVSAIEVSPDGKQFSITSP--------DRRIRVFWFRTGKL 147 (485)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~v~~i~~spdg~~lat~s~--------D~~I~iwd~~tg~~ 147 (485)
- ...+.|......+. ....... ++...+++.++.||. ...|.+||+.+.+-
T Consensus 580 w-~~~~~W~~~~~~p~----~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 580 A-TEPITVIKKLQHPL----FQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp S-SCCEEEEEEEECGG----GCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred c-ccceEEEEcCCCCC----CCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 2 11122321111000 0011112 223334788888874 34688999888753
No 414
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=22.25 E-value=82 Score=33.53 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=27.1
Q ss_pred ceEEECCCCCEEEEecCCC-eEEEEcccCeEEEeecc
Q 011436 195 SNAIFDESSNFLIYATLLG-IKIVNLHTNKVSRILGK 230 (485)
Q Consensus 195 ~~i~fd~~g~~l~~~s~~~-i~v~d~~tg~~v~~~~~ 230 (485)
.++.++ .+||++-|.+. +|+||+.+++++.+..-
T Consensus 225 s~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 225 SCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 344554 67999988876 99999999999987754
No 415
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=20.50 E-value=82 Score=29.56 Aligned_cols=29 Identities=7% Similarity=-0.034 Sum_probs=19.5
Q ss_pred CCCCEEEEEeCCC------cEEEEECCCCcEEEEe
Q 011436 123 PDGKQFSITSPDR------RIRVFWFRTGKLRRVY 151 (485)
Q Consensus 123 pdg~~lat~s~D~------~I~iwd~~tg~~~~~~ 151 (485)
.+++.++.|+.+. .|.++++++++.+...
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 4788889998653 4556688888876543
Done!