RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011437
(485 letters)
>1kae_A HDH, histidinol dehydrogenase; L-histidinol dehydrogenase,
homodimer, rossman fold, 4 domai L-histidine
biosynthesis, NAD cofactor; HET: HSO NAD; 1.70A
{Escherichia coli} SCOP: c.82.1.2 PDB: 1k75_A* 1kah_A*
1kar_A
Length = 434
Score = 643 bits (1662), Expect = 0.0
Identities = 202/436 (46%), Positives = 271/436 (62%), Gaps = 8/436 (1%)
Query: 48 SMKS-YRLSELTHAEVQSLKARPRIDFS-SIFSMVHPIVDDVRNRGDASVKDYTERFDKV 105
S + + T + + L RP I S SI V+ I+D+V+ RGD ++++Y+ +FDK
Sbjct: 2 SFNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVKARGDEALREYSAKFDKT 61
Query: 106 KLEKVVENVSELPD--PELDAAVKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCKRVA 163
+ + + E+ L +K+A VA NI FH AQK VE GVRC++V
Sbjct: 62 TVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQKLPPVDVETQPGVRCQQVT 121
Query: 164 RSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSICKVLYCAKKAGV 223
R + SVGLY+PGG+A L ST LML+ PA IAGCK VVL +PP I LY A+ GV
Sbjct: 122 RPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLCSPPPIADEI---LYAAQLCGV 178
Query: 224 THILKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSE 283
+ GGAQAI+A+A+GTES PKV+KIFGPGN +VT AK + +IDMPAGPSE
Sbjct: 179 QDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAKRQVSQRLDGAAIDMPAGPSE 238
Query: 284 VLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPRGEF 343
VLVIAD A+P +A+DLLSQAEHGPDSQV+L+ + + + + +Q LPR E
Sbjct: 239 VLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAADM-ARRVAEAVERQLAELPRAET 297
Query: 344 ASKALGHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEKWESIIENAGSVFLGEWTPES 403
A +AL S ++ +D+ + + SN Y PEHLI+ ++A + I +AGSVFLG+W+PES
Sbjct: 298 ARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRNARELVDSITSAGSVFLGDWSPES 357
Query: 404 VGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMAEIEGLE 463
GDYASGTNHVLPTYGY + L F K MTVQ L++EG L + T+A E L
Sbjct: 358 AGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTVQELSKEGFSALASTIETLAAAERLT 417
Query: 464 AHKRAVTFRLQDIEAR 479
AHK AVT R+ ++ +
Sbjct: 418 AHKNAVTLRVNALKEQ 433
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 1e-10
Identities = 75/516 (14%), Positives = 154/516 (29%), Gaps = 184/516 (35%)
Query: 40 LIHKRIQCSMKSYRLSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGD--ASVKD 97
L H ++ + + + L+ + F+ + P + D + +
Sbjct: 11 LSHGSLEHVLL---VPTASFFIASQLQEQ--------FNKILPEPTEGFAADDEPTTPAE 59
Query: 98 YTERFDKVKLEKVVENVSELPDPELDAAVK---EAFDVAY---NNIYAF--HLAQKSAET 149
+F L V V + D + F+ Y N+I+A L Q++ +T
Sbjct: 60 LVGKF----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN-DT 114
Query: 150 SVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDG 209
++ V+ K + ++ Y+ TA +++ K S
Sbjct: 115 TL-----VKTKELIKN------YI---------TARIMA--------KRPFDKKSNS--- 143
Query: 210 SICKVLYCAKKAGVTHILKAGGAQAISAMAWGTESCPKVEKIFGPGNQYVTAAKMILQNS 269
L+ A G + +A IFG G Q
Sbjct: 144 ----ALFRAVGEGNAQL-----------VA-----------IFG-G-----------Q-- 163
Query: 270 EAMISIDMPAGPSEVLV--IADIYASP-------VHIAADLLSQ-AEHGPDSQVVLVIVG 319
G ++ + D+Y + + +A+ LS+ D++ V
Sbjct: 164 ----------GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF---T 210
Query: 320 DGVDLDA-IEQEISKQCQSLPRGEFASKA-----------LGHSFMVFARDMLEGISFSN 367
G+++ +E + P ++ L H ++V A+ + G +
Sbjct: 211 QGLNILEWLENP-----SNTPDKDYLLSIPISCPLIGVIQLAH-YVVTAKLL--GFTPGE 262
Query: 368 LYAPEH-LIVNVKD---------AEKWESIIENAGSV-----FLG----EWTP-----ES 403
L + + + + WES + F+G E P S
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 404 VGDYASGTNHVLPTYGYARMYG--GVSLDSFLKYM--TVQSLTEEGLKKL------GP-- 451
+ + + N +P+ M ++ + Y+ T L K++ G
Sbjct: 323 ILEDSLENNEGVPSP----MLSISNLTQEQVQDYVNKTNSHLPAG--KQVEISLVNGAKN 376
Query: 452 YVAT--MAEIEGLEAHKRAVTFRLQDIEARQVSSKR 485
V + + GL R ++R S+R
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Score = 54.7 bits (131), Expect = 5e-08
Identities = 76/493 (15%), Positives = 143/493 (29%), Gaps = 191/493 (38%)
Query: 23 RF-GFT--RVQK-------------YNQFFSSGL----IH--------------KRIQCS 48
+F G+ V+ +F + L IH + +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 49 MKSYRLSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRNRGDASV----------KDY 98
+K+Y A + + + + S++F V G+A + DY
Sbjct: 123 IKNY-----ITARIMAKRPFDKKSNSALFRAV--------GEGNAQLVAIFGGQGNTDDY 169
Query: 99 TERFDKVKLEKVVENVSELPDPELDAAVKEAFDVAYNNIYAFHLAQ--KSAETSVENMKG 156
F+ EL ++ + Y + K + ++ +
Sbjct: 170 ---FE-----------------EL----RDLYQ-----TYHVLVGDLIKFSAETLSEL-- 198
Query: 157 VRCKRVARSIGSVGLYVPG---GTAVLPSTALMLSVP--------AQIA----GCKTVVL 201
+R A + + GL + + P +LS+P Q+A K +
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 202 ATPPSQDGSICKVLYCAKKAGVTHILKAGGAQAIS-AMAWGTESCPKVEKIFGPGNQYVT 260
TP + ++ G+ + A AI+ +W ES F +V+
Sbjct: 259 -TPGELRSYLKGATGHSQ--GL--VT----AVAIAETDSW--ES-------F-----FVS 295
Query: 261 AAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGD 320
K I + I G + P I D L E P L I
Sbjct: 296 VRKAI----TVLFFI----G-VRCYEAYPNTSLPPSILEDSLENNEGVPSPM--LSISN- 343
Query: 321 GVDLDAIEQEISKQCQSLPRGEFASKAL--GHSFMV---FARDMLEG------------- 362
+ + ++ ++K LP G+ +L G +V + L G
Sbjct: 344 -LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS-LYGLNLTLRKAKAPSG 401
Query: 363 ------------ISFSNLY----APEH---LIVNVKDAEKWESIIENAGSVFLGEWTPES 403
+ FSN + +P H L A + I ++ + + +
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLL----VPAS--DLINKDLVKNNV-SFNAKD 454
Query: 404 ----VGDYASGTN 412
V D G++
Sbjct: 455 IQIPVYDTFDGSD 467
Score = 43.9 bits (103), Expect = 1e-04
Identities = 46/311 (14%), Positives = 84/311 (27%), Gaps = 120/311 (38%)
Query: 54 LSELTHAEVQSLKARPRIDFSSIFSMVHPIVDDVRN-RGDAS----VKDYTERFDKVKLE 108
++ L V+ +A P S++ D + N G S + + T + +++
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPP--SILE---DSLENNEGVPSPMLSISNLT----QEQVQ 350
Query: 109 KVVENV-SELP-DPELDAAVKEAFDVAYNNI--------YAF--HLAQKSAETSVENMKG 156
V S LP +++ ++ N + Y L + A + ++ +
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAK---NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 157 VRCKRVARSIGSVGLYVPGGTAVLPSTA-----LMLSVPAQI---AGCKTVV-----LAT 203
+R + LP + L++ I V +
Sbjct: 408 PFSERKLK----------FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 204 P--PSQDGS------------ICKVLYC-------AKKAGVTHILKAGGAQAISAMAWGT 242
P + DGS I + + THIL
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--------------- 502
Query: 243 ESCPKVEKIFGPGNQYVTAAKMILQNSEAMISIDMPAGPSEVLVIADIYASPVHIAADLL 302
FGPG + +N + G V VI +A L
Sbjct: 503 --------DFGPGGA-SGLGVLTHRNKDG-------TG---VRVI---------VAGTL- 533
Query: 303 SQAEHGPDSQV 313
+ PD
Sbjct: 534 ---DINPDDDY 541
Score = 40.4 bits (94), Expect = 0.001
Identities = 47/273 (17%), Positives = 81/273 (29%), Gaps = 62/273 (22%)
Query: 82 PIVDDVRNRGDASVKDYTERFDKVKLEKVVENVSEL---PDPELDAAVKEAFDVAYNNIY 138
DV NR D K + + L+ V+ N L E ++E Y
Sbjct: 1640 KAAQDVWNRADNHFK---DTYGFSILDIVINNPVNLTIHFGGEKGKRIREN--------Y 1688
Query: 139 AFHLAQKSAETSVENMKGVRCKRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKT 198
+ + + + ++ K K + S G +L +T Q A
Sbjct: 1689 SAMIFETIVDGKLKTEK--IFKEINEHSTSYTFRSEKG--LLSATQF-----TQPA---- 1735
Query: 199 VVLATPPSQDGSICKVLYCAKKAGVTHILK--AG---G---AQAISAMAWGTESCPKVEK 250
+ + + + L K G+ AG G A A A ES +V
Sbjct: 1736 -LTLM--EK--AAFEDL---KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV-- 1785
Query: 251 IFGPGNQYVTAAKMILQNSEAMISIDMPA-GPSEVLVIADIYASPVHIAADLLSQAEHG- 308
+F G T + ++ + M A P V A + + + +
Sbjct: 1786 VFYRGM---TMQVAVPRDELGRSNYGMIAINPGR--VAASFSQEALQYVVERVGKRTGWL 1840
Query: 309 --------PDSQVVLVIVGDGVDLDAIEQEISK 333
+ Q V GD LD + ++
Sbjct: 1841 VEIVNYNVENQQY--VAAGDLRALDTVTNVLNF 1871
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 2e-07
Identities = 77/513 (15%), Positives = 136/513 (26%), Gaps = 169/513 (32%)
Query: 13 HIFIKP---LQNRR-FGFTRVQK---YNQFFSSGLIHKRIQCSMKSYR-LSELTHAEVQS 64
HI + R F ++ +F L +Y+ L E +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL--------RINYKFLMSPIKTEQRQ 104
Query: 65 LKARPRIDFSSIFSMVHPIVDDVRNRGDASVKDYTERFDKV-KLEKVVENVSELPDPEL- 122
+ + D + N K R KL + + + P +
Sbjct: 105 -PSMMTRMYIEQ-------RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--PAKNVL 154
Query: 123 ------------------DAAVKEAFDVAYNNIYAFHLAQ-KSAETSVENMKG----VRC 159
V+ D I+ +L S ET +E ++ +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMD---FKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 160 KRVARSIGSVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGSI-------C 212
+RS S + + + L+ S P + +VL Q+ C
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLN--VQNAKAWNAFNLSC 266
Query: 213 KVLYCAKKAGVTHILKAGGAQAISA--MAWG-TESCPKVEKIFGPGNQYVTAAKMILQNS 269
K+L + VT L A IS + T +V+ + K
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLL---------LK------ 309
Query: 270 EAMISIDMPAG--PSEVLVIADIYASPVHIA--ADLLSQAEHGPD--SQVVLVIVGDGVD 323
+D P EVL +P ++ A+ + D V+
Sbjct: 310 ----YLDCRPQDLPREVLTT-----NPRRLSIIAESIRDGLATWDNWKH---------VN 351
Query: 324 LDAIEQEISKQCQSLPRGEFASKALGHSFMVFARDMLEGISFSNLYAPEHLIVNVKDAEK 383
D + I L E+ + + VF I P L+ +
Sbjct: 352 CDKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAH--I-------PTILLSLI----- 395
Query: 384 WESIIENAGSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTE 443
W +I++ V ++ KY SL E
Sbjct: 396 WFDVIKS---------DVMVV------------------------VNKLHKY----SLVE 418
Query: 444 EGLKKL-----GPYVATMAEIEGLEA-HKRAVT 470
+ K+ Y+ ++E A H+ V
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Score = 47.2 bits (111), Expect = 1e-05
Identities = 66/536 (12%), Positives = 137/536 (25%), Gaps = 205/536 (38%)
Query: 10 NRSHIFIKPLQNRRFGFTRVQKYNQFFSSGLIHKRIQCSMKSYRLSELTHAEVQSLKARP 69
N ++ LQ + + + +L + S++A
Sbjct: 193 NSPETVLEMLQKLLYQID--PNWTSRSDH----------SSNIKL------RIHSIQAEL 234
Query: 70 RIDFSSIFSMVHP----IVDDVRNRGDASVKDYTERFDKVKLEKVVENVSELPDPELDAA 125
R S + ++ +V+N K
Sbjct: 235 RRLLKS---KPYENCLLVLLNVQNA------------------KAW-------------- 259
Query: 126 VKEAFDVAYNNIYAFHLAQKSAETSVENMKGVRCK-----R---VARSIGSVGLYVPGGT 177
AF+ + CK R V + + +
Sbjct: 260 --NAFN-------------------------LSCKILLTTRFKQVTDFLSAATTTHI--S 290
Query: 178 AVLPSTAL----MLSVPAQIAGCKTVVLATPPSQDGSICKV--LYCAKKAGVTHILKAGG 231
S L + S+ + C+ L P + + + I+
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDL---PRE---VLTTNPRRLS-------II---A 334
Query: 232 AQAISAMA----WGTESCPKVEKIFGPGNQYVTAAKMILQNSEA--------MISIDMPA 279
+A W +C K+ I + L E +S+ P
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTII----------ESSLNVLEPAEYRKMFDRLSV-FPP 383
Query: 280 G---PSEVLVI---ADIYASPVHIAADL--LSQAEHGPDSQVVLVIVGDGVDLDAIEQEI 331
P+ +L + I + + + L S E P + + +I E+
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--------ISIPSIYLEL 435
Query: 332 SKQCQSLPRGEFASKALGHSFMV-------------FARDMLEGISFSNL-YAPEHLIVN 377
+ ++ AL H +V L+ +S++ + HL N
Sbjct: 436 KVKLENEY-------AL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH---HLK-N 483
Query: 378 VKDAEKWESIIENAGSVFLG-EWTPESV---GDYASGTNHVLPTYGYARMYGGVSLDSFL 433
++ E+ VFL + + + + + +L T + Y
Sbjct: 484 IEHPERMTLFRM----VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-------- 531
Query: 434 KYMTVQSLT-EEGLKKLGPYVATMAEIEGLEAHKRAVTFRLQD------IEA-RQV 481
Y+ E + + ++ + E + + L EA +QV
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain complex,
cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 33.2 bits (76), Expect = 0.026
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 398 EWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMA 457
+W+P V D+ G + L Y +S D L +T Q L + G+ ++G +
Sbjct: 6 KWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQ-LLRITHQELEDLGVSRIGHQELILE 64
Query: 458 EIEGLEAHKRAVTFRLQ 474
++ L A+ + L+
Sbjct: 65 AVDLL----CALNYGLE 77
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 32.4 bits (74), Expect = 0.044
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 392 GSVFLGEWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGP 451
GS + +W+P V D+ G + L Y +S D L+ +T Q L + G+ ++G
Sbjct: 4 GSSGVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLR-ITHQELEDLGVSRIGH 62
Query: 452 YVATMAEIEGL 462
+ ++ L
Sbjct: 63 QELILEAVDLL 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.089
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 160 KRVARSI-GSVGLYVPGGTAVLPSTALMLSVPAQI 193
K+ + + S+ LY +A P+ L++ A +
Sbjct: 19 KQALKKLQASLKLYAD-DSA--PA----LAIKATM 46
Score = 29.1 bits (64), Expect = 1.6
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 11/29 (37%)
Query: 443 EEGLKKL-----------GPYVATMAEIE 460
++ LKKL P +A A +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 3.3
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 13/33 (39%)
Query: 360 LEGISFSNLYAPEH---LIVNVKDAEKWESIIE 389
L+ S LYA + L + + +E
Sbjct: 25 LQA-SL-KLYADDSAPALAIK--------ATME 47
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 30.2 bits (68), Expect = 0.39
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 398 EWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEEGLKKLGPYVATMA 457
WTP V + G + L Y + + L+ + QSL ++ LG +
Sbjct: 13 TWTPGKVATWLRGLDDSL--QDYPFEDWQLPGKNLLQ-LCPQSLEALAVRSLGHQELILG 69
Query: 458 EIEGLEAHKRAVTFRLQ 474
+E L +A++ RLQ
Sbjct: 70 GVEQL----QALSSRLQ 82
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 29.5 bits (66), Expect = 0.66
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 398 EWTPESVGDYASGTNHVLPTYGYARMYGGVSLDSFLKYMTVQSLTEE-GLKKLGPYVATM 456
+WT E V Y ++ L +G + + L + + + + GL KLGP +
Sbjct: 16 DWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALL-RLNSERMMKYMGL-KLGPALKIC 73
Query: 457 AEIEGLEAHKRA 468
+ +
Sbjct: 74 NLVNKVNGRDHH 85
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 30.4 bits (69), Expect = 0.85
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 188 SVPAQIAGCKTVVLATPPSQDGSICKVLY--------CAKKAGVTHILKAGGA 232
V +AG V++ D S V+ K GV ++ A
Sbjct: 60 DVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 28.6 bits (63), Expect = 3.9
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 277 MPAGPSEVLVIADIYASPVHIAADLLSQAEHGPDSQVVLVIVGD 320
M P +VL I + + AE PD +LV+VG+
Sbjct: 1 MGIMPRKVLAIKNFKERFDLLPKLKGVIAEKQPD---ILVVVGN 41
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli}
SCOP: a.174.1.1
Length = 148
Score = 28.0 bits (63), Expect = 4.4
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 294 PVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPR 340
P+H+ + LL+Q V ++ G++ + +I++ LP+
Sbjct: 31 PLHLMSALLNQ----EGGSVSPLLTSAGINAGQLRTDINQALNRLPQ 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.3 bits (64), Expect = 6.3
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 294 PVHIAADLLSQAEHGPDSQVVLVIVGDGVDLDAIEQEISKQCQSLPR 340
H+ A LL S ++ G D A+++ ++ LP+
Sbjct: 31 LPHLWAVLLKD----ERSLAWRLLEKAGADPKALKELQERELARLPK 73
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 28.2 bits (63), Expect = 6.9
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 271 AMISIDMPAGPSEVLVIADIYASPVHIAADLLSQAEHGP---DSQVVLVIVGDGVDLDAI 327
+ I++ + D+ + LS +VV +++ D V +
Sbjct: 560 KNLGIELTDDQLNITPPPDVNGLKKDPS---LSLYAIPDGDVKGRVVAILLNDEVRSADL 616
Query: 328 EQ 329
Sbjct: 617 LA 618
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,365,388
Number of extensions: 456377
Number of successful extensions: 1281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1268
Number of HSP's successfully gapped: 30
Length of query: 485
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 388
Effective length of database: 3,993,456
Effective search space: 1549460928
Effective search space used: 1549460928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)