Query 011439
Match_columns 485
No_of_seqs 117 out of 131
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:09:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011439.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011439hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h88_D Succinate dehydrogenase 11.5 62 0.0021 27.3 0.6 27 213-241 77-103 (103)
2 2krx_A ASL3597 protein; struct 9.3 1.3E+02 0.0045 25.5 1.8 21 167-187 18-39 (94)
3 3sok_A Fimbrial protein; pilus 8.5 3.9E+02 0.013 23.1 4.6 24 333-356 10-33 (151)
4 1rkl_A Dolichyl-diphosphooligo 8.4 1.5E+02 0.0051 21.0 1.5 14 185-198 18-31 (36)
5 2i7u_A Four-alpha-helix bundle 8.1 1E+02 0.0036 23.5 0.6 15 61-75 20-34 (62)
6 1oqw_A Fimbrial protein; type 7.8 4.1E+02 0.014 22.6 4.5 24 333-356 10-33 (144)
7 2lat_A Dolichyl-diphosphooligo 7.7 1.4E+02 0.0048 21.2 1.1 14 185-198 18-31 (37)
8 2hi2_A Fimbrial protein; type 7.4 4.3E+02 0.015 22.7 4.4 25 333-357 10-34 (158)
9 3h87_C Putative uncharacterize 7.3 1.4E+02 0.0048 24.0 1.1 33 408-441 4-36 (73)
10 3zwl_E Eukaryotic translation 7.1 1.4E+02 0.0047 22.5 0.9 17 171-187 14-30 (50)
No 1
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=11.53 E-value=62 Score=27.34 Aligned_cols=27 Identities=22% Similarity=0.456 Sum_probs=22.5
Q ss_pred hhcccCceEEEEecCCchHHHHHHHHHHH
Q 011439 213 WMTGFGNFSYYYIRKDFSLARFAQMMWRL 241 (485)
Q Consensus 213 fmTGYGhfsYf~~k~DFsl~R~~qvl~RL 241 (485)
..|++| .|++.++|=|+.+..+.+|+|
T Consensus 77 ~~t~~G--l~~~~~~d~Gi~~~ik~lW~l 103 (103)
T 2h88_D 77 AITFTG--LCYFNYYDVGICKAVAMLWSI 103 (103)
T ss_dssp HHHHHH--HHHHHHHSSCHHHHHHHHHTC
T ss_pred HHHHHH--HheeeecCCcHHHHHHHHhcC
Confidence 466666 677789999999999999985
No 2
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=9.27 E-value=1.3e+02 Score=25.46 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=17.2
Q ss_pred CccccccCchhhhhh-HHHHHH
Q 011439 167 GKSILYLNRHQTEEW-RGWMQV 187 (485)
Q Consensus 167 gk~~~~LnRdQTeEW-KGWMQ~ 187 (485)
|++..||+.+++.|| |+|.|-
T Consensus 18 ~~~EqfLT~~Ell~~Lk~~L~~ 39 (94)
T 2krx_A 18 NQPEQFLTTIELLEKLKGELEK 39 (94)
T ss_dssp SSCSEEECHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHh
Confidence 456679999999998 888874
No 3
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=8.49 E-value=3.9e+02 Score=23.15 Aligned_cols=24 Identities=17% Similarity=0.512 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhh
Q 011439 333 IWIVGMIYAYYHPTVEKWMEKLEE 356 (485)
Q Consensus 333 iv~~GMl~A~~~~~~~~~~~~l~~ 356 (485)
++++|++.|++.|.++++.++-+.
T Consensus 10 iaIigiLaaia~p~~~~~~~~~~~ 33 (151)
T 3sok_A 10 VAIIGILAAFAIPAYNDYIARSQA 33 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999887654443
No 4
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=8.41 E-value=1.5e+02 Score=21.03 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=10.3
Q ss_pred HHHHHHHHHhccch
Q 011439 185 MQVLFLMYHYFAAT 198 (485)
Q Consensus 185 MQ~~iLiYHY~gAS 198 (485)
|=+++.+|||.++.
T Consensus 18 ~~~LIvlYH~v~~n 31 (36)
T 1rkl_A 18 MMTLIVIYHAVDST 31 (36)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 34678899997763
No 5
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=8.14 E-value=1e+02 Score=23.47 Aligned_cols=15 Identities=47% Similarity=0.676 Sum_probs=11.4
Q ss_pred ccchhhhcCCCCCCC
Q 011439 61 DDRAVLLEGGGLQPA 75 (485)
Q Consensus 61 ~~~~~~~~~~~~~~~ 75 (485)
+|.|.|+|||+...+
T Consensus 20 eeaaklleggggggg 34 (62)
T 2i7u_A 20 EEAAKLLEGGGGGGG 34 (62)
T ss_dssp HHHHHHHHCSSCSSS
T ss_pred HHHHHHHhcCCCCch
Confidence 588999998775543
No 6
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=7.80 E-value=4.1e+02 Score=22.55 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhh
Q 011439 333 IWIVGMIYAYYHPTVEKWMEKLEE 356 (485)
Q Consensus 333 iv~~GMl~A~~~~~~~~~~~~l~~ 356 (485)
++++|++.|++.|.++++.++-+.
T Consensus 10 i~Ii~il~~ia~p~~~~~~~~~~~ 33 (144)
T 1oqw_A 10 VAIIGILAAIAIPQYQNYVARSEG 33 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999998887654433
No 7
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=7.67 E-value=1.4e+02 Score=21.25 Aligned_cols=14 Identities=36% Similarity=0.842 Sum_probs=10.2
Q ss_pred HHHHHHHHHhccch
Q 011439 185 MQVLFLMYHYFAAT 198 (485)
Q Consensus 185 MQ~~iLiYHY~gAS 198 (485)
|=+++++|||.++.
T Consensus 18 ~~~LIVlYH~v~~n 31 (37)
T 2lat_A 18 LFLLVVLYHYVAVN 31 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 34678899997663
No 8
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=7.35 E-value=4.3e+02 Score=22.68 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhh
Q 011439 333 IWIVGMIYAYYHPTVEKWMEKLEET 357 (485)
Q Consensus 333 iv~~GMl~A~~~~~~~~~~~~l~~~ 357 (485)
++++|++.|++.|.++.+.++-+..
T Consensus 10 i~ii~il~~~~~p~~~~~~~~~~~~ 34 (158)
T 2hi2_A 10 IAIVGILAAVALPAYQDYTARAQVS 34 (158)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5789999999999998876544433
No 9
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=7.28 E-value=1.4e+02 Score=24.04 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=28.0
Q ss_pred HHHhccchhhhhhhhHHHHHHhhhhHHHHHhhhh
Q 011439 408 ICLRNISQNVRSYSLTLFAWLGKITLETYISQFH 441 (485)
Q Consensus 408 I~LRN~t~~LRs~~s~~fawlGkiSLEtyIlQfH 441 (485)
|.+||++.-....--...+--| .|+|.|+.+.=
T Consensus 4 i~IRnvpdev~~~L~~rAa~~G-~S~~~ylr~~L 36 (73)
T 3h87_C 4 VLIRDIPDDVLASLDAIAARLG-LSRTEYIRRRL 36 (73)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHT-CCHHHHHHHHH
T ss_pred eeecCCCHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 3579999999999888888888 79999998643
No 10
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=7.10 E-value=1.4e+02 Score=22.48 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=12.8
Q ss_pred cccCchhhhhhHHHHHH
Q 011439 171 LYLNRHQTEEWRGWMQV 187 (485)
Q Consensus 171 ~~LnRdQTeEWKGWMQ~ 187 (485)
...=|.+.+||+-|-+-
T Consensus 14 Ie~RRrlLeEW~awRa~ 30 (50)
T 3zwl_E 14 ILHQRELLKQWTEYREK 30 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33447899999999763
Done!