Query 011439
Match_columns 485
No_of_seqs 117 out of 131
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 08:10:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011439.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011439hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 23.4 44 0.0032 25.5 4.6 25 333-357 10-34 (158)
2 d1otsa_ f.20.1.1 (A:) Clc chlo 7.7 5.1E+02 0.037 23.7 8.3 11 333-343 239-249 (444)
3 d1v54m_ f.23.7.1 (M:) Mitochon 6.6 2.1E+02 0.015 19.3 3.3 33 4-36 7-43 (43)
4 d1xrda1 f.3.1.1 (A:1-52) Light 4.9 1.1E+02 0.0081 21.5 1.0 16 200-215 7-22 (52)
5 d1kqfb2 f.23.22.1 (B:246-290) 4.9 1.1E+02 0.0083 20.8 1.1 19 178-196 5-33 (45)
6 d1jb0m_ f.23.19.1 (M:) Subunit 4.8 2.7E+02 0.02 17.3 2.8 23 7-29 3-27 (31)
7 d2fqma1 d.378.1.1 (A:107-171) 4.5 1.1E+02 0.008 22.3 0.8 19 171-189 22-40 (65)
8 d1c1ka_ a.120.1.1 (A:) gene 59 3.5 1.5E+02 0.011 26.0 1.0 14 429-442 154-167 (217)
9 d1jlwa1 a.45.1.1 (A:91-217) Cl 3.5 2.6E+02 0.019 20.8 2.4 15 344-358 95-109 (127)
10 d1pv7a_ f.38.1.2 (A:) Lactose 3.5 4.3E+02 0.031 21.4 4.0 10 171-180 406-415 (417)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=23.44 E-value=44 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhhhh
Q 011439 333 IWIVGMIYAYYHPTVEKWMEKLEET 357 (485)
Q Consensus 333 iv~~GMl~A~~~~~~~~~~~~l~~~ 357 (485)
++++|+|.|++.|.+.++.++-+..
T Consensus 10 iaIIgILaaia~P~~~~~~~~a~~~ 34 (158)
T d2pila_ 10 IAIVGILAAVALPAYQDYTARAQVS 34 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998886644433
No 2
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=7.65 E-value=5.1e+02 Score=23.73 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=6.5
Q ss_pred HHHHHHHHHhh
Q 011439 333 IWIVGMIYAYY 343 (485)
Q Consensus 333 iv~~GMl~A~~ 343 (485)
....|++++..
T Consensus 239 ~~~lgi~~g~~ 249 (444)
T d1otsa_ 239 YLILGIIFGIF 249 (444)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45567776653
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.65 E-value=2.1e+02 Score=19.30 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=23.1
Q ss_pred CCCCCcchhhhhhhHHH----HHHHHHHHHHHhhhcc
Q 011439 4 SSPITPSQVSFFLGLVP----VLIAWLYAEYLEYKKS 36 (485)
Q Consensus 4 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 36 (485)
-.|+++++++.-++++- +-.+|+.|..=+|||+
T Consensus 7 ~~~ls~~E~aigLt~~f~~~L~PaGwVLshLe~YKk~ 43 (43)
T d1v54m_ 7 KTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKS 43 (43)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHhccC
Confidence 35788888776544221 2368999998889985
No 4
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=4.93 E-value=1.1e+02 Score=21.53 Aligned_cols=16 Identities=0% Similarity=0.316 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHhhc
Q 011439 200 IYNAIRIFIAAYVWMT 215 (485)
Q Consensus 200 IYn~IRv~VAAYlfmT 215 (485)
++.+-|++||-.+|+.
T Consensus 7 ~fDPRr~lva~~~fL~ 22 (52)
T d1xrda1 7 LFDPRQALVGLATFLF 22 (52)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHH
Confidence 5677788888777664
No 5
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.87 E-value=1.1e+02 Score=20.84 Aligned_cols=19 Identities=26% Similarity=0.740 Sum_probs=12.2
Q ss_pred hhhhHHHHH----------HHHHHHHhcc
Q 011439 178 TEEWRGWMQ----------VLFLMYHYFA 196 (485)
Q Consensus 178 TeEWKGWMQ----------~~iLiYHY~g 196 (485)
..=||||+- ++..++||.+
T Consensus 5 V~lWKgv~Kpl~~~~~~~~~~~~~fHYv~ 33 (45)
T d1kqfb2 5 VSLWKGALKPLAAAGFIATFAGLIFHYIG 33 (45)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHhhhe
Confidence 345999876 3345677754
No 6
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=4.83 E-value=2.7e+02 Score=17.31 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=17.1
Q ss_pred CCcch--hhhhhhHHHHHHHHHHHH
Q 011439 7 ITPSQ--VSFFLGLVPVLIAWLYAE 29 (485)
Q Consensus 7 ~~~~~--~~~~~~~~~~~~~~~~~~ 29 (485)
++.-| ++..++++|-+.||-.+.
T Consensus 3 lsdtqv~valvial~pg~lafrlat 27 (31)
T d1jb0m_ 3 LTDTQVYVALVIALLPAVLAFRLST 27 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445 466888999999997765
No 7
>d2fqma1 d.378.1.1 (A:107-171) Phosphoprotein P (M1) {Vesicular stomatitis indiana virus [TaxId: 11277]}
Probab=4.51 E-value=1.1e+02 Score=22.30 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=14.0
Q ss_pred cccCchhhhhhHHHHHHHH
Q 011439 171 LYLNRHQTEEWRGWMQVLF 189 (485)
Q Consensus 171 ~~LnRdQTeEWKGWMQ~~i 189 (485)
.=|..+||+.|+-=.-++.
T Consensus 22 ~gLt~~Q~~QW~~TIeav~ 40 (65)
T d2fqma1 22 EGLSGEQKSQWMLTIKAVV 40 (65)
T ss_dssp SSCCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 4589999999986555443
No 8
>d1c1ka_ a.120.1.1 (A:) gene 59 helicase assembly protein {Bacteriophage T4 [TaxId: 10665]}
Probab=3.53 E-value=1.5e+02 Score=26.03 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=10.7
Q ss_pred hhhhHHHHHhhhhh
Q 011439 429 GKITLETYISQFHI 442 (485)
Q Consensus 429 GkiSLEtyIlQfHI 442 (485)
|+|||||.|.-=+|
T Consensus 154 ~~IslETlvILD~i 167 (217)
T d1c1ka_ 154 NIISFETFILLDSF 167 (217)
T ss_dssp TSSCHHHHHHHHHH
T ss_pred CCchHhHHHHHHHH
Confidence 67999999875444
No 9
>d1jlwa1 a.45.1.1 (A:91-217) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-4 [TaxId: 123217]}
Probab=3.52 E-value=2.6e+02 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=12.3
Q ss_pred hhhHHHHHHhhhhhH
Q 011439 344 HPTVEKWMEKLEETE 358 (485)
Q Consensus 344 ~~~~~~~~~~l~~~~ 358 (485)
+|++++|.+++++.+
T Consensus 95 ~P~l~~w~~rl~~~p 109 (127)
T d1jlwa1 95 YENVQRWYERTSAIV 109 (127)
T ss_dssp SHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHccC
Confidence 588999999887765
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.47 E-value=4.3e+02 Score=21.44 Aligned_cols=10 Identities=50% Similarity=0.521 Sum_probs=8.1
Q ss_pred cccCchhhhh
Q 011439 171 LYLNRHQTEE 180 (485)
Q Consensus 171 ~~LnRdQTeE 180 (485)
..+.|+|.||
T Consensus 406 ~~~~r~~~~e 415 (417)
T d1pv7a_ 406 LSLLRRQVNE 415 (417)
T ss_dssp TTHHHHHHHH
T ss_pred cchhHhhhcc
Confidence 3678999998
Done!