BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011440
(485 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53980|YNB1_YEAST Uncharacterized protein YNL011C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNL011C PE=1 SV=1
Length = 444
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 141/422 (33%), Positives = 212/422 (50%), Gaps = 68/422 (16%)
Query: 61 SLLVFSGGTAFNGVVEELKNITTRVAH----VLPVSDDGGSTAEIVRVLGGPAVGDIRSR 116
+++V SGGTA N + NI+ H +LP+SD+GGST+EI+R++GGPA+GDIRSR
Sbjct: 2 NVVVCSGGTATNSLTPCFSNISILKGHELTYILPISDNGGSTSEILRIVGGPAIGDIRSR 61
Query: 117 CLRL-SDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAF 175
+RL DE E L GHRLP AK EW IVEG H +WK +S +E R+F
Sbjct: 62 IVRLLQDEQLVE------LFGHRLPNDKLLAKKEWNEIVEGSHPIWKNISIEVKEMCRSF 115
Query: 176 LSYFQNEILRRPNES--FCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVL 233
+ + Q E+L++ S F F + SIGNFF GAR+F SLDA+I L R+ V+
Sbjct: 116 IIHMQAELLKKIKHSNPFQFESASIGNFFLTGARLFLGSLDASIELMMRIGRCSPLVHVI 175
Query: 234 PVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSA---------------- 277
P I+TN + L +G +I GQ++ISHP+ + SA
Sbjct: 176 PCINTNHTHHISALLTNGEMITGQSQISHPSKSVPKDNSIAHSAKFIHLLGSYDDHLKIL 235
Query: 278 ------------------VPALPSRIKRVFYMSSEGSNL---LHEVIAVVLFYWFSYLTQ 316
+P L + + F E NL +H ++ + +
Sbjct: 236 LDDEEEEAEEEYANPIYILPELKNS-QLHFDKLDESQNLPAPVHRILYINPY-------G 287
Query: 317 QMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEII-SSRSCPKVLLLNGL 375
+ + P N + ++ D ++Y++GSL TS+ P L+L + E+I S + KVLL+N
Sbjct: 288 EEIKPMGNPRAISKVKKADMVVYSIGSLMTSLLPILILGNLAEVILESNNTKKVLLINNK 347
Query: 376 EDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQ--------YINTILVPEDGEIP 427
DRE G +V I D+++RA ++S K S+ +I I+ ++GEI
Sbjct: 348 YDREVFGLDGLHYVQMIIDSMSRAIAGYRQS-KGVHSENDDFEWQDFITDIVYLKNGEIE 406
Query: 428 LD 429
+D
Sbjct: 407 ID 408
>sp|Q9K706|Y3568_BACHD UPF0052 protein BH3568 OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH3568
PE=1 SV=1
Length = 322
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 133/337 (39%), Gaps = 101/337 (29%)
Query: 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
+ +++VF GGT + ++ LK + ++ V+DDGGS+ + + L P GD+R+ +
Sbjct: 3 KKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 62
Query: 119 RLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
LS E P + +L HR
Sbjct: 63 ALS-EVEP---LLEQLFQHR---------------------------------------- 78
Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
F+N S S+GN AG I S+V ++ +VLP ++
Sbjct: 79 FEN--------GNGLSGHSLGNLLLAGMTSITGDFARGISEMSKVLNV--RGKVLP--AS 126
Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
N + L E+ DGT++ G+ S++P +IKRVF
Sbjct: 127 NRSIILHGEMEDGTIVTGE------------------SSIPKAGKKIKRVF--------- 159
Query: 299 LHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIG 358
LT + P L+ + D I+ GSL+TS+ P+L++ GI
Sbjct: 160 ---------------LTPKDTKPLREG--LEAIRKADVIVIGPGSLYTSVLPNLLVPGIC 202
Query: 359 EIISSRSCPKVLLLNGL-EDRETSGFSASCFVTAITD 394
E I + KV + N + ++ ET G++AS + AI D
Sbjct: 203 EAIKQSTARKVYICNVMTQNGETDGYTASDHLQAIMD 239
>sp|O06974|YVCK_BACSU UPF0052 protein YvcK OS=Bacillus subtilis (strain 168) GN=yvcK PE=3
SV=1
Length = 317
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 142/374 (37%), Gaps = 116/374 (31%)
Query: 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
+P + +F GGT + ++ LK+ + ++ V+DDGGS+ + L P GDIR+
Sbjct: 4 KPKIAIFGGGTGLSVLLRGLKHKPVDITAIVTVADDGGSSGRLRNELKIPPPGDIRNVLA 63
Query: 119 RLSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
LSD E L V L HR
Sbjct: 64 ALSDV---EPL-VEDLFQHRF--------------------------------------- 80
Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
N+ + S+GN A A+ S+V ++ +VLP +
Sbjct: 81 ---------NKGNDLTGHSLGNLILAAMTNITGDFFHAVTEMSKVLNV--RGKVLP--AA 127
Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
N + L E+ DG V+ G+ S +P RIKRVF
Sbjct: 128 NASVVLHAEMEDGRVVSGE------------------STIPEYGQRIKRVF--------- 160
Query: 299 LHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIG 358
LT + + P + +D + D II GSL+TSI P+L++ IG
Sbjct: 161 ---------------LTPEQIDPLPET--IDVIREADLIIIGPGSLYTSILPNLLVPKIG 203
Query: 359 EIISSRSCPKVLLLNGL-EDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINT 417
E + KV + N + + ET ++A+ V ALN+ G +I+T
Sbjct: 204 EEVIKAPAKKVYICNVMTQPGETLHYTAADHVK----ALNQHMG----------CGFIDT 249
Query: 418 ILVPEDGEIPLDIQ 431
ILV + +IP +I+
Sbjct: 250 ILVNSE-DIPDEIK 262
>sp|Q97LP2|Y512_CLOAB UPF0052 protein CA_C0512 OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=CA_C0512 PE=3 SV=1
Length = 451
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 126/336 (37%), Gaps = 100/336 (29%)
Query: 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR 119
P ++ GGT + ++ LK T+ + V+ V+DDGG + + LG GDIR+ L
Sbjct: 103 PKIVAIGGGTGLSTMLRGLKYYTSNITAVVTVADDGGGSGALREDLGILPPGDIRNCILA 162
Query: 120 LSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY- 178
LSD ++P E + L Y
Sbjct: 163 LSD------------------------------------------TEPLMEDL---LQYR 177
Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
F++ R N+SF GN F A + + A+ S V + +VLPV T
Sbjct: 178 FKDG--RLKNQSF-------GNLFLAAMDGISTNFEEAVHKMSSV--LAVTGKVLPV--T 224
Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
D + L +L +G V+ G++ I P++K ++ E +
Sbjct: 225 LDNVVLKAKLKNGVVVEGESNIPEQAILYESPIEK---------------IFIEPENARA 269
Query: 299 LHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIG 358
LHE + + D +I GSLFTS+ P+L++ IG
Sbjct: 270 LHETVQAI-------------------------KEADAVILGPGSLFTSVIPNLLVKDIG 304
Query: 359 EIISSRSCPKVLLLNGL-EDRETSGFSASCFVTAIT 393
+ K+ + N + + ET FS S V AIT
Sbjct: 305 NALLKTKALKLYVSNIMTQPGETDNFSVSDHVNAIT 340
>sp|P38541|YAMB_THETU UPF0052 protein in amyB 5'region OS=Thermoanaerobacter
thermosulfurogenes PE=3 SV=1
Length = 323
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 128/334 (38%), Gaps = 98/334 (29%)
Query: 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR 119
P ++V GGT + ++ LK T + ++ V+DDGG + + LG GDIR+ C+
Sbjct: 10 PKVVVIGGGTGLSTMLRGLKKYTHNITAIVTVADDGGGSGVLREDLGMLPPGDIRN-CI- 67
Query: 120 LSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYF 179
LA+R P K Y +G + KG
Sbjct: 68 ---------LALRN-------TEPTMEKLLQYRFTDG---MLKG---------------- 92
Query: 180 QNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTN 239
+SF GN F A S + A+ S V + +VLPV T
Sbjct: 93 ---------QSF-------GNLFLAAMNGISISFEEAVKKMSEV--LAVSGKVLPV--TL 132
Query: 240 DRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLL 299
D + L +L +G VI G+ S+ P + + P I+R+F +
Sbjct: 133 DDVKLKAKLKNGIVIDGE---------SLIPKLQMKEKSP-----IERIFLEPKDAK--- 175
Query: 300 HEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGE 359
A++D ++A D II GSL+TSI P+L++ + E
Sbjct: 176 ----------------------PVKEALIDIMDA-DEIILGPGSLYTSIIPNLLVNDVCE 212
Query: 360 IISSRSCPKVLLLNGL-EDRETSGFSASCFVTAI 392
I KV + N + + ET G+ A+ V A+
Sbjct: 213 AIEDSKAIKVYVCNIMTQPGETIGYDANAHVDAL 246
>sp|Q55575|Y154_SYNY3 UPF0052 protein sll0154 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll0154 PE=3 SV=1
Length = 462
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 94/247 (38%), Gaps = 50/247 (20%)
Query: 193 FSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGT 252
S S GN F L+ A S+V + +VLP +T D + L E+ DG
Sbjct: 228 LSGHSFGNLFLTAMAEITGDLEMAAIACSKV--LAVRGKVLP--ATLDDVKLWAEMEDGR 283
Query: 253 VIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVIAVVLFYWFS 312
+ G+ S +P RI+R+ +
Sbjct: 284 YVEGE------------------SNIPEAQGRIRRIGCLPES------------------ 307
Query: 313 YLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLL 372
P A AVL + A D II GSL+TSI P+L++ I I+ P++ +
Sbjct: 308 --------PKALPAVLKAIKAADYIIIGPGSLYTSILPNLLIPEIQTAIAKAKVPRIYIC 359
Query: 373 NGL-EDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGE-IPLDI 430
N + + ET ++ S +TAI + D +N PS + E+ + LD
Sbjct: 360 NVMTQPGETDNYTVSDHLTAIDQVSSARLYDAVLVQRNPPSAPVLKKYAAENSHPVYLDR 419
Query: 431 QCLASQG 437
Q + +G
Sbjct: 420 QAVIEKG 426
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 61 SLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRL 120
++V GGT + ++ LK+ + + ++ V+DDGGS+ + R +G GDIR+ L
Sbjct: 148 KIVVVGGGTGLSTLLRGLKHYSANITAIVTVADDGGSSGRLRREMGMLPPGDIRNCIGAL 207
Query: 121 SDE 123
+DE
Sbjct: 208 ADE 210
>sp|P58588|Y2473_LISMO UPF0052 protein lmo2473 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=lmo2473 PE=3 SV=1
Length = 322
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 98/239 (41%), Gaps = 58/239 (24%)
Query: 193 FSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGT 252
S IGN S AI + + V I +V+P +T+ L L E+ DG+
Sbjct: 88 LSGHVIGNLILTALSQLNDSYVDAINVLATVLKI--RGKVIP--ATDQPLILNAEMEDGS 143
Query: 253 VIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVIAVVLFYWFS 312
++ G+ S +P I RV+ E N+
Sbjct: 144 IVHGE------------------SLIPLQGKHINRVYI---EPENV-------------- 168
Query: 313 YLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLL 372
+PTA AV D I+ GSL+TSI P+L+L + + I++ PKV +
Sbjct: 169 -----KPYPTAVEAV----KEADLIVIGPGSLYTSILPNLLLTELADEITASKAPKVYIT 219
Query: 373 NGL-EDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDI 430
N L + ET FS + + I + + +++ D K+L INT VP++ P D+
Sbjct: 220 NILTQIGETDFFSDADHIKVIHEHVGKSFID--KTL-------INTTTVPKELLFPEDV 269
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRC 117
T+P ++V GGT +++ LK + ++ V+DDGGS+ +I + GDIR+
Sbjct: 5 TKPRVVVIGGGTGLPVILKGLKKKDIHLTAIVTVADDGGSSGKIREQMDVLPPGDIRNVM 64
Query: 118 LRLSD 122
L LS+
Sbjct: 65 LALSN 69
>sp|O66974|Y778_AQUAE UPF0052 protein aq_778 OS=Aquifex aeolicus (strain VF5) GN=aq_778
PE=3 SV=1
Length = 328
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 120/331 (36%), Gaps = 105/331 (31%)
Query: 61 SLLVFSGGTAFNGVVEELK----NITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSR 116
+++ GGT + ++ LK R++ ++ V+D GGST + ++ PA GDIR+
Sbjct: 5 NVVAIGGGTGLSSLLRGLKIEVGRSIGRLSAIVTVADSGGSTGRLRKIYNIPAPGDIRNC 64
Query: 117 CLRLSD-ESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAF 175
+ LSD E + L R G L H AF
Sbjct: 65 IVALSDAEELMQKLFQYRFKGDGLEGH-------------------------------AF 93
Query: 176 LSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPV 235
GN F S AI S++ + ++ ++P
Sbjct: 94 -----------------------GNLFLTALTDITGSFLKAIKETSKI--LKTKGDIIP- 127
Query: 236 ISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEG 295
ST + + L E DG VI+G+ EI+ +G
Sbjct: 128 -STYENVNLVAEFDDGKVIKGEEEITE----------------------------YGKKG 158
Query: 296 SNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLL 355
H+V+ + W P A ++++ D II GSLFTSI P+ ++
Sbjct: 159 ----HKVVNI----WLEPKN-----PKAPEEAIERIKEADLIIIGPGSLFTSILPNFLVP 205
Query: 356 GIGEIISSRSCPKVLLLNGL-EDRETSGFSA 385
I E + KV ++N + + ET F+A
Sbjct: 206 QIREAVKESRALKVFVVNVMTQPGETDNFTA 236
>sp|Q9RUF1|Y1435_DEIRA UPF0052 protein DR_1435 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=DR_1435 PE=3 SV=1
Length = 467
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 69/163 (42%), Gaps = 43/163 (26%)
Query: 237 STNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGS 296
+T +TL EL DG IRG++ + E ++ PSRI+RV E
Sbjct: 266 ATTRPVTLVAELADGRTIRGESRFA-------EQIR---------PSRIERVRL---EPE 306
Query: 297 NLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLG 356
N P+A + VL+ + + I+ GSLFTSI P+L++
Sbjct: 307 N-----------------------PSALTQVLEAVRDAEMIVLGPGSLFTSIIPALLIPD 343
Query: 357 IGEIISSRSCPKVLLLNGL-EDRETSGFSASCFVTAITDALNR 398
I + P V + + + E ET G S S V AIT L R
Sbjct: 344 IARAVRESPAPVVYVASLMTEPGETDGLSLSDHVNAITRHLGR 386
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLS 121
++ GGT + ++ LK ++ + V+ V+DDGGS+ + L A GD+ LS
Sbjct: 148 VVTVGGGTGLSNLLTGLKTHSSNITAVVTVADDGGSSGRLREALDMVAPGDLTDCYAALS 207
Query: 122 DESTPEALAVRRLLGHR 138
E+ A+ RLL HR
Sbjct: 208 -----ESPALARLLLHR 219
>sp|Q9CGY0|YJIF_LACLA UPF0052 protein YjiF OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=yjiF PE=3 SV=1
Length = 327
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 313 YLTQQMV--FPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVL 370
YLTQ P A+ V+ + D I+ GSLFTSI P++V+ I E + S V
Sbjct: 160 YLTQTASGDSPVASKNVVKSIMEADTIVLGPGSLFTSILPNIVIPEICEALWKTSAKIVY 219
Query: 371 LLNGLEDR-ETSGFSASCFVTAITDALNRAYGDPQ-KSLKNSPSQYINT 417
+ N + R ET FS + V + + + D +++ P +Y+NT
Sbjct: 220 VCNIMTQRGETEHFSDADHVRVLNEHIGTKVIDTVLVNIQEVPEEYMNT 268
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRC 117
+ P ++V GGT V++ L+ + ++ V+DDGGS+ I + GD+R+
Sbjct: 2 SNPKVVVIGGGTGIPVVLKALRKEKIDLTAIVTVADDGGSSGRIRSAVNIAPPGDLRNVL 61
Query: 118 LRLSD 122
+ +SD
Sbjct: 62 IAMSD 66
>sp|Q928C0|Y2616_LISIN UPF0052 protein lin2616 OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=lin2616 PE=3 SV=1
Length = 322
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 97/239 (40%), Gaps = 58/239 (24%)
Query: 193 FSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGT 252
S IGN S AI + + V I +V+P +T+ L L E+ DG+
Sbjct: 88 LSGHVIGNLILTALSQLNDSYVDAINVLATVLKI--RGKVIP--ATDQPLILNAEMEDGS 143
Query: 253 VIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVIAVVLFYWFS 312
++ G+ S +P I RVF E N+
Sbjct: 144 IVHGE------------------SLIPLQGKHINRVFI---EPENV-------------- 168
Query: 313 YLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLL 372
+PTA AV D I+ GSL+TSI P+L+L + E I++ KV +
Sbjct: 169 -----KPYPTAVEAV----KEADLIVIGPGSLYTSILPNLLLEELAEEITASKAQKVYIT 219
Query: 373 NGL-EDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDI 430
N L + ET FS + + I + + +++ D K+L INT VP++ P D+
Sbjct: 220 NILTQIGETDFFSDADHIKVIHEHVGKSFID--KTL-------INTTTVPKELLFPEDV 269
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRC 117
T+P ++V GGT V++ LK + ++ V+DDGGS+ +I + GDIR+
Sbjct: 5 TKPKVVVIGGGTGLPVVLKGLKKKEIHLTAIVTVADDGGSSGKIREQMDVLPPGDIRNVM 64
Query: 118 LRLSD 122
L LS+
Sbjct: 65 LALSN 69
>sp|O52750|Y2298_NOSS1 UPF0052 protein alr2298 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=alr2298 PE=3 SV=1
Length = 456
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR 119
P ++V GGT + ++ LK + + ++ V+DDGGS+ + + G GDIR+
Sbjct: 137 PKIVVIGGGTGLSTLLRGLKTYSANITAIVTVADDGGSSGRLRQEFGVLPPGDIRNCLAA 196
Query: 120 LSDE 123
L+DE
Sbjct: 197 LADE 200
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 50/218 (22%)
Query: 197 SIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRG 256
S GN F L+ A+ S+V + QVLP ++ RL EL DG I G
Sbjct: 222 SFGNLFLTAMSDITGDLERAVAASSKV--LAVRGQVLPATLSDVRLW--AELADGRRIEG 277
Query: 257 QNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVIAVVLFYWFSYLTQ 316
+ S++P +I ++ + + L + A+
Sbjct: 278 E------------------SSIPKAGGKIVKIGCIPANPPALPAAIKAI----------- 308
Query: 317 QMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGL- 375
D II GSL+TS+ P+L++ I + I+ P++ + N +
Sbjct: 309 ---------------KEADYIIIGPGSLYTSLIPNLLVSDIADAIAQSQAPRIYVCNVMT 353
Query: 376 EDRETSGFSASCFVTAITDALN-RAYGDPQKSLKNSPS 412
+ ET G++ + + AI A R D K SPS
Sbjct: 354 QPGETQGYTVADHIRAIDAACGERQLFDAVLVHKKSPS 391
>sp|P71691|Y1422_MYCTU UPF0052 protein Rv1422/MT1465 OS=Mycobacterium tuberculosis
GN=Rv1422 PE=1 SV=1
Length = 342
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 321 PTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGL-EDRE 379
P A +D + A D ++ GS FTS+ P +++ G+ + + S + L+LN + E E
Sbjct: 174 PPATRQAVDAIMAADLVVLGPGSWFTSVIPHVLVPGLAAALRATSARRALVLNLVAEPGE 233
Query: 380 TSGFS 384
T+GFS
Sbjct: 234 TAGFS 238
>sp|Q97PN8|Y1565_STRPN UPF0052 protein SP_1565 OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=SP_1565 PE=1 SV=1
Length = 325
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 321 PTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDR-E 379
P A+ V+ + D I+ GSLFTSI P++V+ IG + + N + R E
Sbjct: 171 PLASRRVVQTILESDMIVLGPGSLFTSILPNIVIKEIGRALLETKAEIAYVCNIMTQRGE 230
Query: 380 TSGFSASCFVTAITDALNRAYGDP-QKSLKNSPSQYINT 417
T F+ S V + L R + D +++ P +Y+N+
Sbjct: 231 TEHFTDSDHVEVLHRHLGRPFIDTVLVNIEKVPQEYMNS 269
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEI---VRVLGGPAVGDIRS 115
+P + V GGT +++ L+ +A ++ V+DDGGS+ E+ ++ L P GD+R+
Sbjct: 3 KPKITVIGGGTGSPVILKSLREKDVEIAAIVTVADDGGSSGELRKNMQQLTPP--GDLRN 60
Query: 116 RCLRLSD 122
+ +SD
Sbjct: 61 VLVAMSD 67
>sp|Q9X235|Y1709_THEMA UPF0052 protein TM_1709 OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=TM_1709 PE=3 SV=1
Length = 314
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 106/298 (35%), Gaps = 103/298 (34%)
Query: 61 SLLVFSGGTAFNGVVEELKNITT-RVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR 119
++ GGT + +++ LKNI + + V+ V+D+GGS+ ++ + L P GD+R+ +
Sbjct: 2 KVVAVGGGTGLSTLLKGLKNIDSFEITAVVSVTDEGGSSGKLRKELNVPPPGDVRNNIVA 61
Query: 120 LSDESTPEALAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYF 179
L+ + LL AK Y EG
Sbjct: 62 LAKDED--------LL----------AKLMSYRFSEG----------------------- 80
Query: 180 QNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTN 239
F S+GN A S AI + RV I + +VLPV +
Sbjct: 81 ------------SFKGHSLGNLIIAALTKIEGSFSEAIRILERVLAI--KGRVLPVSEDH 126
Query: 240 DRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLL 299
RL E DG + G+ I G + V+ +R + ALP
Sbjct: 127 ARLVARFE--DGEEVIGETNIVR-KGGKIVEVRLDR-PIDALPE---------------- 166
Query: 300 HEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGI 357
VL+ + D II+ GSL+TSI ++++ G+
Sbjct: 167 ---------------------------VLEAIERADIIIFGPGSLYTSIITNVLVNGV 197
>sp|Q9A0R7|Y653_STRP1 UPF0052 protein SPy_0653/M5005_Spy0540 OS=Streptococcus pyogenes
serotype M1 GN=SPy_0653 PE=3 SV=1
Length = 325
Score = 38.9 bits (89), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 321 PTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDR-E 379
P A+ V++ + D I+ GSLFTSI P+LV+ I E + V + N + E
Sbjct: 170 PQASRKVVEAILESDMIVLGPGSLFTSILPNLVIPEIKEALRQTKAEVVYICNIMTQYGE 229
Query: 380 TSGFSASCFVTAITDALNRAYGDP-QKSLKNSPSQYINT 417
T FS + V + L R D ++ P Y+N+
Sbjct: 230 TEQFSDADHVAVLNQHLGRDLIDTVLVNVAKVPQAYMNS 268
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR 119
P + V GGT + +++ L+N + V+ V+DDGGS+ E+ + GD+R+ L
Sbjct: 4 PKMTVIGGGTGISIILKSLRNEAVDITAVVTVADDGGSSGELRNAMQLAPPGDLRNVLLA 63
Query: 120 LSD 122
+SD
Sbjct: 64 MSD 66
>sp|Q8P1T7|Y714_STRP8 UPF0052 protein spyM18_0714 OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=spyM18_0714 PE=3 SV=1
Length = 325
Score = 38.9 bits (89), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 321 PTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDR-E 379
P A+ V++ + D I+ GSLFTSI P+LV+ I E + V + N + E
Sbjct: 170 PQASRKVVEAILESDMIVLGPGSLFTSILPNLVIPEIKEALRQTKAEVVYICNIMTQYGE 229
Query: 380 TSGFSASCFVTAITDALNRAYGDP-QKSLKNSPSQYINT 417
T FS + V + L R D ++ P Y+N+
Sbjct: 230 TEQFSDADHVAVLNQHLGRDLIDTVLVNVAKVPQAYMNS 268
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR 119
P + V GGT + +++ L+N + V+ V+DDGGS+ E+ + GD+R+ L
Sbjct: 4 PKMTVIGGGTGISIILKSLRNEAVDITAVVTVADDGGSSGELRNAMQLAPPGDLRNVLLA 63
Query: 120 LSD 122
+SD
Sbjct: 64 MSD 66
>sp|Q5XD18|Y560_STRP6 UPF0052 protein M6_Spy0560 OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=M6_Spy0560 PE=3
SV=1
Length = 325
Score = 38.9 bits (89), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 321 PTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDR-E 379
P A+ V++ + D I+ GSLFTSI P+LV+ I E + V + N + E
Sbjct: 170 PQASRKVVEAILESDMIVLGPGSLFTSILPNLVIPEIKEALRQTKAEVVYICNIMTQYGE 229
Query: 380 TSGFSASCFVTAITDALNRAYGDP-QKSLKNSPSQYINT 417
T FS + V + L R D ++ P Y+N+
Sbjct: 230 TEQFSDADHVAVLNQHLGRDLIDTVLVNVAKVPQAYMNS 268
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR 119
P + V GGT + +++ L+N + V+ V+DDGGS+ E+ + GD+R+ L
Sbjct: 4 PKMTVIGGGTGISIILKSLRNEAVDITAVVTVADDGGSSGELRNAMQLAPPGDLRNVLLA 63
Query: 120 LSD 122
+SD
Sbjct: 64 MSD 66
>sp|P0DG79|Y463_STRPQ UPF0052 protein SPs1392 OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=SPs1392 PE=3 SV=1
Length = 325
Score = 38.9 bits (89), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 321 PTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDR-E 379
P A+ V++ + D I+ GSLFTSI P+LV+ I E + V + N + E
Sbjct: 170 PQASRKVVEAILESDMIVLGPGSLFTSILPNLVIPEIKEALRQTKAEVVYICNIMTQYGE 229
Query: 380 TSGFSASCFVTAITDALNRAYGDP-QKSLKNSPSQYINT 417
T FS + V + L R D ++ P Y+N+
Sbjct: 230 TEQFSDADHVAVLNQHLGRDLIDTVLVNVAKVPQAYMNS 268
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR 119
P + V GGT + +++ L+N + V+ V+DDGGS+ E+ + GD+R+ L
Sbjct: 4 PKMTVIGGGTGISIILKSLRNEAVDITAVVTVADDGGSSGELRNAMQLAPPGDLRNVLLA 63
Query: 120 LSD 122
+SD
Sbjct: 64 MSD 66
>sp|P0DG78|Y463_STRP3 UPF0052 protein SpyM3_0463 OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=SpyM3_0463 PE=3 SV=1
Length = 325
Score = 38.9 bits (89), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 321 PTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLEDR-E 379
P A+ V++ + D I+ GSLFTSI P+LV+ I E + V + N + E
Sbjct: 170 PQASRKVVEAILESDMIVLGPGSLFTSILPNLVIPEIKEALRQTKAEVVYICNIMTQYGE 229
Query: 380 TSGFSASCFVTAITDALNRAYGDP-QKSLKNSPSQYINT 417
T FS + V + L R D ++ P Y+N+
Sbjct: 230 TEQFSDADHVAVLNQHLGRDLIDTVLVNVAKVPQAYMNS 268
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR 119
P + V GGT + +++ L+N + V+ V+DDGGS+ E+ + GD+R+ L
Sbjct: 4 PKMTVIGGGTGISIILKSLRNEAVDITAVVTVADDGGSSGELRNAMQLAPPGDLRNVLLA 63
Query: 120 LSD 122
+SD
Sbjct: 64 MSD 66
>sp|Q9CCN9|Y564_MYCLE UPF0052 protein ML0564 OS=Mycobacterium leprae (strain TN)
GN=ML0564 PE=3 SV=1
Length = 359
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 319 VFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLN-GLED 377
V P A +D + A + ++ GS FTS+ P +++ G+ + + + + L+LN
Sbjct: 177 VDPPATRQAVDAIMAANLVVLGPGSWFTSVIPHVLVPGLVTALRATTARRALVLNLAAGP 236
Query: 378 RETSGFS 384
ET+GFS
Sbjct: 237 GETAGFS 243
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR 119
PS++ GG + + +T V ++ V+DDGGS+ + LG GD+R
Sbjct: 8 PSIVALGGGHGLYVTLSAARRLTPYVTAIVTVADDGGSSGRLRSELGVVPPGDLRMALAA 67
Query: 120 LSDES 124
L+ +S
Sbjct: 68 LASDS 72
>sp|Q6Z3Y6|GT71_ORYSJ Probable glucuronosyltransferase Os07g0694400 OS=Oryza sativa
subsp. japonica GN=Os07g0694400 PE=2 SV=1
Length = 338
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 183 ILRRP--NESFCFSNGSIGNFFF-------AGARVFFQSLDAAIFLFSRVSDIPSESQVL 233
+LRR + S CF G + AGA VF ++L A+ +FSR S+ P + Q++
Sbjct: 24 VLRRAMLHSSLCFLVGLLAGLAAPSDWPAAAGAAVFLRTLRASNVIFSRSSNRPQQPQLV 83
Query: 234 PVISTNDR 241
V++T ++
Sbjct: 84 VVVTTTEQ 91
>sp|Q9CN20|Y626_PASMU UPF0052 protein PM0626 OS=Pasteurella multocida (strain Pm70)
GN=PM0626 PE=3 SV=1
Length = 308
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLR-- 119
++ GG ++ L + +R+ ++ +D+GGST I GG A GD+R+ CL
Sbjct: 19 VVAIGGGHGLGRLMSALSFMKSRLTGIVTTTDNGGSTGRIRLNHGGIAWGDLRN-CLNQI 77
Query: 120 LSDESTPEALAVRRLLG 136
+++ ST +L R G
Sbjct: 78 ITEPSTASSLFEYRFTG 94
>sp|C4KZ18|LIPM_EXISA Octanoyltransferase LipM OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=lipM PE=3 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 131 VRRLLGHRLPLH----------PQQAKSEWYNIVEGEHSLWKGVSKPYRE-----TIRAF 175
VRRL G R LH P+ + NI+E L +GV + YRE
Sbjct: 74 VRRLTGGRAVLHADELTYSVILPESTPALPTNIIESYRLLTEGVRRGYRELGVPAEFSVP 133
Query: 176 LSYFQNEILRRPNESFCFSNGSIGNFFFAGARV 208
L+ E LR+P + CF S G ++
Sbjct: 134 LTEEDREALRKPKSAVCFDAASYYELAVDGKKI 166
>sp|O07104|RSMH_ENTFA Ribosomal RNA small subunit methyltransferase H OS=Enterococcus
faecalis (strain ATCC 700802 / V583) GN=rsmH PE=3 SV=3
Length = 318
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%)
Query: 379 ETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGI 438
ET+G TAI R G P K + + +N L + + I LA G
Sbjct: 182 ETTGELVEIIKTAIPAPARRKGGHPAKRIFQAIRIAVNDELGAVEESLEQAIDLLAKNGR 241
Query: 439 FDVITVHSICDPKVGIIFDPKSLIQAI 465
VIT HS+ D V +F S +Q +
Sbjct: 242 ISVITFHSLEDRIVKTMFKEYSTVQDL 268
>sp|Q5F5P6|DEF_NEIG1 Peptide deformylase OS=Neisseria gonorrhoeae (strain ATCC 700825 /
FA 1090) GN=def PE=3 SV=1
Length = 167
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 408 KNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVIT 443
++ P +IN ++V +DGE + CL+ GI+D +T
Sbjct: 67 RSEPRVFINPVIVEKDGETTYEEGCLSVPGIYDAVT 102
>sp|P12933|DPOL_HBVC3 Protein P OS=Hepatitis B virus genotype C subtype adr (strain
Japan/adr4/1983) GN=P PE=3 SV=2
Length = 843
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 18/164 (10%)
Query: 140 PLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIG 199
P +P+ A + ++ H+LWK RET R+ SFC S S
Sbjct: 131 PYYPEHAVNHYFKTRHYLHTLWKAGILYKRETTRS--------------ASFCGSPYSWE 176
Query: 200 NFFFAGARVFFQSLDAAIFLF-SRVSDIPSESQVLPVISTN-DRLTLGCELGDGTVIRGQ 257
G VF S F S+ S I S S V P + + + LG + G++ RG+
Sbjct: 177 QELQHGRLVFQTSTRHGDESFCSQSSGILSRSPVGPCVRSQLTQSRLGLQPQQGSLARGK 236
Query: 258 NEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301
+ S + P + V P+ R+ +S S+ LH+
Sbjct: 237 SGRSGSIRARVHPTTRRSFGVE--PAGSGRIDNRASSTSSCLHQ 278
>sp|Q9KT82|Y1023_VIBCH UPF0052 protein VC_1023 OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=VC_1023 PE=3 SV=1
Length = 296
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 323 ANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGL 375
A + + DC+I GS TS+ P L+L +G+ I+ KV+ + L
Sbjct: 169 ATKEAVTAIQDADCVILGPGSFLTSVMPPLLLPELGKAIARNQTAKVIFVENL 221
>sp|A1KRE5|DEF_NEIMF Peptide deformylase OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=def PE=3
SV=1
Length = 167
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 408 KNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVIT 443
++ P +IN ++V +DGE + CL+ GI+D +T
Sbjct: 67 RSEPRVFINPVIVEKDGETTYEEGCLSVPGIYDTVT 102
>sp|P63916|DEF_NEIMB Peptide deformylase OS=Neisseria meningitidis serogroup B (strain
MC58) GN=def PE=3 SV=1
Length = 167
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 408 KNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVIT 443
++ P +IN ++V +DGE + CL+ GI+D +T
Sbjct: 67 RSEPRVFINPVIVEKDGETTYEEGCLSVPGIYDTVT 102
>sp|P63915|DEF_NEIMA Peptide deformylase OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=def PE=3 SV=1
Length = 167
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 408 KNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVIT 443
++ P +IN ++V +DGE + CL+ GI+D +T
Sbjct: 67 RSEPRVFINPVIVEKDGETTYEEGCLSVPGIYDTVT 102
>sp|A9M464|DEF_NEIM0 Peptide deformylase OS=Neisseria meningitidis serogroup C (strain
053442) GN=def PE=3 SV=1
Length = 167
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 408 KNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVIT 443
++ P +IN ++V +DGE + CL+ GI+D +T
Sbjct: 67 RSEPRVFINPVIVEKDGETTYEEGCLSVPGIYDTVT 102
>sp|Q6S9V7|CISY_KATPE Citrate synthase, mitochondrial OS=Katsuwonus pelamis GN=cs PE=2
SV=1
Length = 469
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 363 SRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPE 422
SR PK+L + +AS T + D L+ Q +KN QY T +
Sbjct: 7 SRLAPKLLNSKNATYFLVAARNASASTTNLKDVLSDLIPKEQSRIKNFKQQYGKTNI--- 63
Query: 423 DGEIPLDIQCLASQGIFDVITVHSICDPKVGIIF 456
G+I +D+ +G+ ++ S+ DP+ GI F
Sbjct: 64 -GQITVDMVYGGMRGMKGLVYETSVLDPEEGIRF 96
>sp|Q54V77|PYRG_DICDI CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1
Length = 569
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 74 VVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRS 115
+ EE++N RVAH LPV D G+ V LGG VGDI S
Sbjct: 117 ITEEIQNWIERVAH-LPVDGDKGTPDVCVIELGG-TVGDIES 156
>sp|P04478|ESG2_TRYBB VSG expression site-associated protein 221A OS=Trypanosoma brucei
brucei PE=2 SV=1
Length = 329
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 385 ASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGE 425
A C++ ++DALN+ Y + +K L + Y N L+ +D E
Sbjct: 42 AVCYLRCLSDALNKLYSEGEKKLLVTEEVYANASLILDDME 82
>sp|P03157|DPOL_HBVC5 Protein P OS=Hepatitis B virus genotype C subtype ad (isolate
Japan/S-179/1988) GN=P PE=3 SV=1
Length = 843
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 18/164 (10%)
Query: 140 PLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIG 199
P +P+ A + ++ H+LWK RET R+ SFC S S
Sbjct: 131 PYYPEHAVNHYFKTRHYLHTLWKAGILYKRETTRS--------------ASFCGSPYSWE 176
Query: 200 NFFFAGARVFFQSLDAAIFLF-SRVSDIPSESQVLPVISTNDRLT-LGCELGDGTVIRGQ 257
G VF S F S+ S I S S V P + + + + LG + G++ RG+
Sbjct: 177 QELQHGRLVFQTSTRHGDESFCSQSSGILSRSPVGPCVRSQLKQSRLGLQPQQGSMARGK 236
Query: 258 NEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301
+ S + P + V PS + +S S+ LH+
Sbjct: 237 SGRSGSIRARVHPTTRRSFGVE--PSGSGHIDNSASSTSSCLHQ 278
>sp|P31870|DPOL_HBVC4 Protein P OS=Hepatitis B virus genotype C subtype adr (isolate
Korea/Kim/1989) GN=P PE=3 SV=1
Length = 842
Score = 32.7 bits (73), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 18/164 (10%)
Query: 140 PLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIG 199
P +P+ A + ++ H+LWK RET R+ SFC S S
Sbjct: 131 PYYPEHAVNHYFKTRHYLHTLWKAGILYKRETTRS--------------ASFCGSPYSWE 176
Query: 200 NFFFAGARVFFQSLDAAIFLF-SRVSDIPSESQVLPVISTNDRLT-LGCELGDGTVIRGQ 257
G VF S F S+ S I S S V P + + + + LG + G++ RG+
Sbjct: 177 QELQHGRLVFQTSTRHGDESFCSQSSGILSRSPVGPCVRSQLKQSRLGLQPQQGSLARGK 236
Query: 258 NEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301
+ S + P + V PS + +S S+ LH+
Sbjct: 237 SGRSGSIRARVPPTTRRSFGVE--PSGSGHIDNRASSTSSCLHQ 278
>sp|C6D563|RSMH_PAESJ Ribosomal RNA small subunit methyltransferase H OS=Paenibacillus
sp. (strain JDR-2) GN=rsmH PE=3 SV=1
Length = 316
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%)
Query: 379 ETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGI 438
ET+G A T I A R G P K + +N L E+ + ++C+ G
Sbjct: 183 ETTGELAELVKTGIPAAARRTGGHPAKRSFQALRIAVNDELGAEEDALEEAVKCIRPGGR 242
Query: 439 FDVITVHSICD 449
VIT HS+ D
Sbjct: 243 ISVITFHSLED 253
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,505,899
Number of Sequences: 539616
Number of extensions: 7309168
Number of successful extensions: 16173
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 16105
Number of HSP's gapped (non-prelim): 70
length of query: 485
length of database: 191,569,459
effective HSP length: 121
effective length of query: 364
effective length of database: 126,275,923
effective search space: 45964435972
effective search space used: 45964435972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)