Query 011440
Match_columns 485
No_of_seqs 162 out of 935
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 01:23:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01826 CofD_related conserv 100.0 2E-81 4.3E-86 634.2 32.0 307 62-469 1-309 (310)
2 cd07044 CofD_YvcK Family of Co 100.0 3E-78 6.4E-83 611.9 30.9 307 62-467 1-309 (309)
3 cd07187 YvcK_like family of mo 100.0 5.4E-78 1.2E-82 610.1 32.0 304 62-466 1-307 (308)
4 PF01933 UPF0052: Uncharacteri 100.0 1.2E-69 2.6E-74 548.1 21.1 286 62-445 1-296 (300)
5 COG0391 Uncharacterized conser 100.0 3E-66 6.5E-71 524.3 22.2 312 57-466 5-322 (323)
6 cd07186 CofD_like LPPG:FO 2-ph 100.0 1.5E-60 3.3E-65 479.5 23.4 290 62-466 1-302 (303)
7 TIGR01819 F420_cofD LPPG:FO 2- 100.0 8.3E-60 1.8E-64 472.3 22.7 284 63-466 1-296 (297)
8 PRK13606 LPPG:FO 2-phospho-L-l 100.0 5.5E-58 1.2E-62 460.6 25.4 290 60-470 1-302 (303)
9 PRK06719 precorrin-2 dehydroge 63.1 7.9 0.00017 36.0 3.5 32 57-88 11-42 (157)
10 PF01220 DHquinase_II: Dehydro 62.9 6.7 0.00015 36.4 2.9 42 326-374 59-103 (140)
11 cd00466 DHQase_II Dehydroquina 57.8 31 0.00068 32.1 6.3 42 326-374 54-102 (140)
12 PTZ00058 glutathione reductase 57.1 9.6 0.00021 42.7 3.4 31 58-88 47-77 (561)
13 PF13241 NAD_binding_7: Putati 56.2 8.7 0.00019 32.9 2.3 36 57-92 5-40 (103)
14 PRK05395 3-dehydroquinate dehy 55.6 16 0.00034 34.3 4.0 42 326-374 56-104 (146)
15 PRK06567 putative bifunctional 55.1 18 0.0004 43.3 5.4 45 48-93 880-926 (1028)
16 PRK13015 3-dehydroquinate dehy 52.9 17 0.00037 34.0 3.8 38 330-374 64-104 (146)
17 PTZ00318 NADH dehydrogenase-li 51.5 14 0.00031 39.2 3.5 32 57-88 8-39 (424)
18 TIGR01470 cysG_Nterm siroheme 51.3 15 0.00034 35.6 3.4 34 57-90 7-40 (205)
19 PRK06718 precorrin-2 dehydroge 50.1 17 0.00038 35.1 3.6 33 57-89 8-40 (202)
20 PRK05562 precorrin-2 dehydroge 48.6 19 0.0004 35.9 3.5 38 56-93 22-59 (223)
21 PF00070 Pyr_redox: Pyridine n 45.9 22 0.00048 28.5 3.1 33 61-94 1-33 (80)
22 PRK12770 putative glutamate sy 45.2 28 0.00061 35.9 4.4 41 46-88 7-47 (352)
23 PRK01581 speE spermidine synth 43.8 12 0.00027 40.0 1.5 33 47-81 135-171 (374)
24 COG1252 Ndh NADH dehydrogenase 42.8 25 0.00054 38.1 3.6 62 58-120 2-66 (405)
25 PF12953 DUF3842: Domain of un 41.2 45 0.00098 30.7 4.5 66 325-394 56-128 (131)
26 TIGR01088 aroQ 3-dehydroquinat 41.1 39 0.00085 31.5 4.2 42 326-374 54-102 (141)
27 PLN00016 RNA-binding protein; 40.8 26 0.00056 36.5 3.4 34 58-91 51-89 (378)
28 PF07992 Pyr_redox_2: Pyridine 40.8 24 0.00052 32.4 2.8 28 61-88 1-28 (201)
29 PF00551 Formyl_trans_N: Formy 40.6 37 0.0008 32.0 4.1 37 60-96 1-41 (181)
30 cd00322 FNR_like Ferredoxin re 39.7 43 0.00094 31.4 4.5 37 57-93 95-136 (223)
31 PRK11749 dihydropyrimidine deh 39.7 32 0.0007 36.9 4.0 36 53-88 134-169 (457)
32 PRK07236 hypothetical protein; 39.4 32 0.00069 35.8 3.8 32 58-89 5-36 (386)
33 cd06183 cyt_b5_reduct_like Cyt 39.2 41 0.00088 32.1 4.2 33 60-92 105-143 (234)
34 PF01408 GFO_IDH_MocA: Oxidore 39.2 49 0.0011 28.1 4.3 58 60-118 1-59 (120)
35 COG1648 CysG Siroheme synthase 38.6 32 0.00068 33.9 3.4 36 57-92 10-45 (210)
36 cd06216 FNR_iron_sulfur_bindin 37.4 51 0.0011 32.0 4.6 35 59-93 122-161 (243)
37 cd06191 FNR_iron_sulfur_bindin 37.2 53 0.0011 31.5 4.7 37 58-94 101-142 (231)
38 PRK06753 hypothetical protein; 37.2 33 0.00072 35.2 3.5 30 60-89 1-30 (373)
39 PRK12810 gltD glutamate syntha 37.0 43 0.00092 36.3 4.4 35 54-88 138-172 (471)
40 PRK08163 salicylate hydroxylas 36.9 37 0.0008 35.1 3.8 30 59-88 4-33 (396)
41 PRK13512 coenzyme A disulfide 36.8 31 0.00068 36.9 3.3 29 60-88 2-32 (438)
42 PF08030 NAD_binding_6: Ferric 36.4 23 0.00049 31.7 1.9 21 61-81 3-23 (156)
43 TIGR01373 soxB sarcosine oxida 35.7 50 0.0011 34.5 4.6 51 57-107 28-84 (407)
44 PRK06847 hypothetical protein; 35.7 40 0.00087 34.5 3.8 30 59-88 4-33 (375)
45 PRK07364 2-octaprenyl-6-methox 35.5 41 0.0009 35.0 3.9 31 59-89 18-48 (415)
46 PF01494 FAD_binding_3: FAD bi 35.3 31 0.00067 34.2 2.8 33 61-93 3-35 (356)
47 PRK09932 glycerate kinase II; 35.2 50 0.0011 35.5 4.5 46 329-374 280-325 (381)
48 cd06187 O2ase_reductase_like T 35.1 54 0.0012 31.1 4.3 35 59-93 98-137 (224)
49 cd06193 siderophore_interactin 34.8 60 0.0013 31.6 4.7 36 59-94 120-157 (235)
50 TIGR00215 lpxB lipid-A-disacch 34.2 44 0.00096 35.2 3.9 31 59-89 5-39 (385)
51 PRK07538 hypothetical protein; 34.0 38 0.00083 35.6 3.4 29 60-88 1-29 (413)
52 PRK12831 putative oxidoreducta 33.3 52 0.0011 35.8 4.3 35 54-88 135-169 (464)
53 PRK04965 NADH:flavorubredoxin 33.1 45 0.00097 34.7 3.7 36 60-95 3-38 (377)
54 TIGR03609 S_layer_CsaB polysac 32.8 69 0.0015 32.1 4.9 24 325-348 56-79 (298)
55 PRK07588 hypothetical protein; 32.8 41 0.00089 34.9 3.4 30 60-89 1-30 (391)
56 PF02601 Exonuc_VII_L: Exonucl 32.6 1.1E+02 0.0025 31.2 6.5 108 280-392 9-129 (319)
57 PF04820 Trp_halogenase: Trypt 32.4 30 0.00065 37.6 2.3 51 212-262 155-206 (454)
58 PRK09564 coenzyme A disulfide 32.3 41 0.00088 35.7 3.3 29 60-88 1-31 (444)
59 cd06192 DHOD_e_trans_like FAD/ 31.7 74 0.0016 30.9 4.8 35 59-93 97-134 (243)
60 PRK05802 hypothetical protein; 31.6 59 0.0013 33.8 4.2 34 58-91 171-207 (320)
61 PRK08051 fre FMN reductase; Va 31.5 38 0.00083 32.8 2.7 24 58-81 101-124 (232)
62 PRK15005 universal stress prot 31.3 83 0.0018 27.4 4.6 46 323-371 95-143 (144)
63 PRK06222 ferredoxin-NADP(+) re 31.0 96 0.0021 31.3 5.5 32 59-90 98-132 (281)
64 cd06195 FNR1 Ferredoxin-NADP+ 30.8 70 0.0015 31.0 4.4 24 58-81 100-123 (241)
65 PRK14138 NAD-dependent deacety 30.8 1.8E+02 0.0039 29.0 7.4 68 324-397 169-242 (244)
66 TIGR00045 glycerate kinase. Th 30.3 61 0.0013 34.8 4.1 46 329-374 279-324 (375)
67 TIGR01316 gltA glutamate synth 30.2 58 0.0012 35.1 4.0 35 55-89 129-163 (449)
68 cd06211 phenol_2-monooxygenase 30.0 46 0.00099 32.2 2.9 33 59-91 109-146 (238)
69 PRK00054 dihydroorotate dehydr 29.6 86 0.0019 30.8 4.8 35 58-92 101-138 (250)
70 PRK09754 phenylpropionate diox 29.5 48 0.001 34.8 3.2 27 58-84 2-28 (396)
71 TIGR03219 salicylate_mono sali 28.7 54 0.0012 34.4 3.4 30 60-89 1-31 (414)
72 KOG3851 Sulfide:quinone oxidor 28.6 63 0.0014 34.5 3.8 40 55-94 35-75 (446)
73 COG0647 NagD Predicted sugar p 28.4 2.1E+02 0.0045 29.4 7.4 109 352-471 24-148 (269)
74 cd06186 NOX_Duox_like_FAD_NADP 28.4 48 0.001 31.2 2.7 33 49-81 93-128 (210)
75 PRK06912 acoL dihydrolipoamide 28.2 54 0.0012 35.2 3.4 36 60-96 1-36 (458)
76 PRK05868 hypothetical protein; 28.2 57 0.0012 34.1 3.4 30 60-89 2-31 (372)
77 PRK10637 cysG siroheme synthas 28.1 55 0.0012 35.6 3.4 69 57-125 10-82 (457)
78 cd06182 CYPOR_like NADPH cytoc 28.0 58 0.0013 32.7 3.4 26 56-81 112-137 (267)
79 COG0665 DadA Glycine/D-amino a 27.7 74 0.0016 32.5 4.2 44 57-100 2-45 (387)
80 PRK13289 bifunctional nitric o 27.7 84 0.0018 33.0 4.6 24 58-81 260-283 (399)
81 cd06194 FNR_N-term_Iron_sulfur 27.6 58 0.0013 31.0 3.2 24 58-81 96-119 (222)
82 cd06210 MMO_FAD_NAD_binding Me 27.3 84 0.0018 30.2 4.3 34 59-92 108-146 (236)
83 cd06189 flavin_oxioreductase N 27.3 53 0.0012 31.4 2.9 34 59-92 98-136 (224)
84 cd06217 FNR_iron_sulfur_bindin 27.0 90 0.002 29.8 4.4 35 59-93 107-146 (235)
85 PRK06475 salicylate hydroxylas 26.9 65 0.0014 33.7 3.6 31 60-90 3-33 (400)
86 COG0825 AccA Acetyl-CoA carbox 26.7 1.6E+02 0.0035 30.8 6.2 136 320-471 132-288 (317)
87 TIGR02360 pbenz_hydroxyl 4-hyd 26.5 66 0.0014 33.7 3.6 33 59-91 2-34 (390)
88 PRK01747 mnmC bifunctional tRN 26.4 80 0.0017 35.8 4.5 41 60-100 261-302 (662)
89 PRK09982 universal stress prot 26.3 64 0.0014 28.7 3.0 36 332-372 102-138 (142)
90 cd06190 T4MO_e_transfer_like T 26.2 56 0.0012 31.3 2.8 23 58-80 96-118 (232)
91 cd06214 PA_degradation_oxidore 26.0 60 0.0013 31.2 3.0 24 58-81 107-130 (241)
92 cd06200 SiR_like1 Cytochrome p 26.0 70 0.0015 31.4 3.5 24 58-81 108-131 (245)
93 TIGR01292 TRX_reduct thioredox 25.8 66 0.0014 31.4 3.3 28 61-88 2-29 (300)
94 cd06201 SiR_like2 Cytochrome p 25.3 98 0.0021 31.4 4.5 25 57-81 153-177 (289)
95 PF13738 Pyr_redox_3: Pyridine 25.3 71 0.0015 29.4 3.3 33 57-89 165-197 (203)
96 TIGR01133 murG undecaprenyldip 25.3 80 0.0017 31.6 3.8 29 60-88 1-34 (348)
97 cd06218 DHOD_e_trans FAD/NAD b 25.2 1.1E+02 0.0023 30.1 4.6 35 58-92 97-134 (246)
98 PF01564 Spermine_synth: Sperm 25.2 72 0.0016 31.8 3.4 23 58-82 76-98 (246)
99 PLN03116 ferredoxin--NADP+ red 25.0 63 0.0014 33.1 3.0 24 58-81 155-178 (307)
100 PRK08305 spoVFB dipicolinate s 24.8 74 0.0016 31.1 3.3 34 58-91 4-42 (196)
101 PF03575 Peptidase_S51: Peptid 24.7 50 0.0011 30.2 2.0 41 323-364 25-65 (154)
102 PRK07634 pyrroline-5-carboxyla 24.5 1.2E+02 0.0027 29.2 4.9 56 59-114 4-61 (245)
103 PRK12814 putative NADPH-depend 24.2 1E+02 0.0022 35.1 4.8 34 55-88 189-222 (652)
104 PRK08345 cytochrome-c3 hydroge 24.2 1.2E+02 0.0027 30.6 4.9 21 59-79 108-128 (289)
105 PRK09853 putative selenate red 24.1 72 0.0016 38.6 3.7 33 56-88 536-568 (1019)
106 cd06198 FNR_like_3 NAD(P) bind 24.1 70 0.0015 30.3 3.0 35 59-93 95-134 (216)
107 KOG0534 NADH-cytochrome b-5 re 24.0 1E+02 0.0022 31.9 4.4 25 57-81 154-178 (286)
108 PRK15456 universal stress prot 24.0 1.4E+02 0.0029 26.3 4.7 45 324-371 94-141 (142)
109 PRK12778 putative bifunctional 23.8 78 0.0017 36.6 3.8 35 55-89 427-461 (752)
110 cd06208 CYPOR_like_FNR These f 23.7 77 0.0017 31.9 3.4 23 59-81 135-157 (286)
111 TIGR03315 Se_ygfK putative sel 23.6 77 0.0017 38.3 3.8 33 56-88 534-566 (1012)
112 cd06212 monooxygenase_like The 23.5 67 0.0015 30.8 2.8 33 59-91 103-140 (232)
113 cd06188 NADH_quinone_reductase 23.4 1.1E+02 0.0023 30.7 4.3 33 59-91 150-188 (283)
114 PF13460 NAD_binding_10: NADH( 23.1 1.1E+02 0.0023 27.8 3.9 48 325-375 52-100 (183)
115 COG0528 PyrH Uridylate kinase 23.0 42 0.00092 33.9 1.3 34 59-92 124-161 (238)
116 PRK08849 2-octaprenyl-3-methyl 22.9 75 0.0016 33.0 3.2 31 60-90 4-34 (384)
117 cd06220 DHOD_e_trans_like2 FAD 22.9 1.3E+02 0.0028 29.1 4.7 34 59-92 88-123 (233)
118 cd06197 FNR_like_2 FAD/NAD(P) 22.9 67 0.0015 31.0 2.6 23 59-81 125-147 (220)
119 PLN02927 antheraxanthin epoxid 22.8 1.1E+02 0.0024 35.3 4.7 33 57-89 79-111 (668)
120 TIGR02911 sulfite_red_B sulfit 22.7 77 0.0017 31.6 3.1 38 57-94 97-140 (261)
121 PRK00711 D-amino acid dehydrog 22.7 83 0.0018 32.8 3.5 31 60-90 1-31 (416)
122 PRK07609 CDP-6-deoxy-delta-3,4 22.6 72 0.0016 32.8 2.9 24 58-81 203-226 (339)
123 PRK09126 hypothetical protein; 22.5 85 0.0018 32.4 3.5 30 59-88 3-32 (392)
124 PRK10342 glycerate kinase I; P 22.5 1.2E+02 0.0026 32.8 4.6 46 329-374 280-325 (381)
125 cd06215 FNR_iron_sulfur_bindin 22.5 69 0.0015 30.5 2.6 22 59-80 103-124 (231)
126 cd06184 flavohem_like_fad_nad_ 22.5 73 0.0016 30.9 2.8 24 58-81 112-135 (247)
127 cd06185 PDR_like Phthalate dio 22.3 1.3E+02 0.0027 28.3 4.4 35 59-93 98-135 (211)
128 PRK00005 fmt methionyl-tRNA fo 22.2 1.8E+02 0.0039 29.9 5.7 36 60-95 1-36 (309)
129 PRK10116 universal stress prot 22.2 1.3E+02 0.0029 26.1 4.2 46 323-372 90-138 (142)
130 PF14737 DUF4470: Domain of un 22.2 41 0.00089 28.8 0.9 18 108-125 30-47 (100)
131 PF12646 DUF3783: Domain of un 22.0 2.5E+02 0.0055 21.8 5.3 46 60-105 1-50 (58)
132 TIGR00640 acid_CoA_mut_C methy 22.0 1.3E+02 0.0029 27.2 4.2 47 323-371 41-89 (132)
133 COG0543 UbiB 2-polyprenylpheno 21.9 1E+02 0.0022 30.7 3.7 23 59-81 107-129 (252)
134 PRK12771 putative glutamate sy 21.8 1.1E+02 0.0024 34.0 4.4 32 56-87 134-165 (564)
135 PRK06696 uridine kinase; Valid 21.8 1.9E+02 0.0041 27.9 5.5 51 57-107 19-73 (223)
136 PLN02172 flavin-containing mon 21.8 1.3E+02 0.0027 33.0 4.7 34 55-88 6-39 (461)
137 PRK12775 putative trifunctiona 21.7 1.2E+02 0.0027 36.5 5.0 43 51-93 89-136 (1006)
138 TIGR03224 benzo_boxA benzoyl-C 21.6 83 0.0018 33.8 3.3 22 59-80 267-288 (411)
139 PRK10684 HCP oxidoreductase, N 21.5 76 0.0017 32.6 2.9 35 58-92 110-149 (332)
140 PF07685 GATase_3: CobB/CobQ-l 21.4 46 0.001 30.7 1.1 44 331-374 5-51 (158)
141 PLN02366 spermidine synthase 21.4 98 0.0021 32.2 3.6 22 58-81 91-112 (308)
142 COG2074 2-phosphoglycerate kin 21.3 99 0.0021 32.0 3.5 48 57-112 86-135 (299)
143 TIGR03169 Nterm_to_SelD pyridi 21.3 72 0.0016 32.8 2.6 21 61-81 1-21 (364)
144 PRK05920 aromatic acid decarbo 21.3 1E+02 0.0023 30.2 3.6 33 58-90 2-38 (204)
145 PRK05714 2-octaprenyl-3-methyl 21.2 85 0.0019 32.7 3.2 29 60-88 3-31 (405)
146 PRK08221 anaerobic sulfite red 20.9 86 0.0019 31.3 3.0 25 57-81 99-123 (263)
147 PTZ00274 cytochrome b5 reducta 20.9 87 0.0019 32.7 3.1 22 59-80 159-180 (325)
148 TIGR02032 GG-red-SF geranylger 20.9 89 0.0019 30.3 3.1 29 61-89 2-30 (295)
149 COG0654 UbiH 2-polyprenyl-6-me 20.6 97 0.0021 32.4 3.5 33 59-91 2-34 (387)
150 PRK06617 2-octaprenyl-6-methox 20.6 88 0.0019 32.5 3.1 29 61-89 3-31 (374)
151 PRK10677 modA molybdate transp 20.5 1.3E+02 0.0029 29.9 4.3 54 55-113 22-78 (257)
152 PF01915 Glyco_hydro_3_C: Glyc 20.5 97 0.0021 29.9 3.2 57 321-377 73-143 (227)
153 PRK12769 putative oxidoreducta 20.5 1E+02 0.0022 35.0 3.9 32 56-87 324-355 (654)
154 PRK08243 4-hydroxybenzoate 3-m 20.4 1E+02 0.0022 32.1 3.6 30 59-88 2-31 (392)
155 PRK10926 ferredoxin-NADP reduc 20.2 1.3E+02 0.0027 29.7 4.0 33 60-92 107-144 (248)
156 cd06196 FNR_like_1 Ferredoxin 20.2 68 0.0015 30.4 2.1 22 60-81 100-121 (218)
No 1
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=100.00 E-value=2e-81 Score=634.20 Aligned_cols=307 Identities=28% Similarity=0.422 Sum_probs=280.8
Q ss_pred EEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcCcCCC
Q 011440 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPL 141 (485)
Q Consensus 62 IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aLa~~~~~~~~~l~~Lf~~Rf~~ 141 (485)
||+||||||++++++|||+++.++|+||||+|||||||+||+++|+++|||+||||.+||+.+. .|.+||+|||+.
T Consensus 1 vV~igGGtGl~~ll~gLk~~~~~ltaIVtv~DdGGSSg~lr~~~g~~~~GDiRn~L~aLa~~~~----~~~~lf~yRf~~ 76 (310)
T TIGR01826 1 VVAIGGGTGLSVLLRGLKELDSRITAIVTVADDGGSSGRLREELDVPPPGDLRNCLAALSDDPS----LLSKLFQYRFGG 76 (310)
T ss_pred CEEEeCcchHHHHHHHHHhcCCCcEEEEECCcCCcchHHHHHhcCCCCCcHHHHHHHHhCcCCh----HHHHHHhccCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999873 799999999963
Q ss_pred ChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 011440 142 HPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFS 221 (485)
Q Consensus 142 ~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~~~gsl~~Ai~~~s 221 (485)
++||++||+|||+|+|+..++|+|.+||+.+|
T Consensus 77 ------------------------------------------------~~dl~gh~~GNl~Laal~~~~g~~~~Ai~~~~ 108 (310)
T TIGR01826 77 ------------------------------------------------GGELSGHSLGNLMLAALSEISGSFLEAINLLS 108 (310)
T ss_pred ------------------------------------------------CCcccCCcHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 25899999999999999999999999999999
Q ss_pred hhcCCCCCCEEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccccCCCCcccccEEEEecCCCCcchhH
Q 011440 222 RVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301 (485)
Q Consensus 222 ~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv~l~~~~~~~~~~~ 301 (485)
++++|+ ++|+|| |+++++|+|+++||+++.||++|+. ...+|++|||.+.
T Consensus 109 ~~l~v~--g~VlP~--t~~~v~L~a~~~dG~~v~Ge~~i~~------------------~~~~I~~v~l~~~-------- 158 (310)
T TIGR01826 109 KILKVK--GRVLPM--SEHPVTLVAEFEDGREVRGESNIPK------------------MGGKIDRVRLEPE-------- 158 (310)
T ss_pred HHhCCC--CEEECC--CCCceEEEEEECCCCEEEEEEhhhc------------------CCCCceEEEEeCC--------
Confidence 999998 899999 8999999999999999999999974 2567999999873
Q ss_pred HHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCC-CCCCcC
Q 011440 302 VIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRET 380 (485)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nl-t~dgET 380 (485)
.|+++|++++||++||+||||||||||||+|||+++||++||++++||||||||+ +|+|||
T Consensus 159 ------------------~~~a~~~al~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~~tq~gEt 220 (310)
T TIGR01826 159 ------------------DVPALREAVEAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGET 220 (310)
T ss_pred ------------------CCCCCHHHHHHHHhCCEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCCCCCCCCC
Confidence 5789999999999999999999999999999999999999999999999999999 899999
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCC-CCCCCccccceeeeecCCCCcccCHHHHHhCCCEEEEeccceecCCCCCccCHH
Q 011440 381 SGFSASCFVTAITDALNRAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPK 459 (485)
Q Consensus 381 ~g~sa~d~v~al~~~lg~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~~l~~~~~~~rhD~~ 459 (485)
+||+++|||++|.+|+|....|.++ +....|.++++.|......+|..|.+.++++|++ |+..+.+...+...||||+
T Consensus 221 ~g~~~~dhv~~i~~~~g~~~~D~vlvn~~~~~~~~~~~y~~~~~~pv~~d~~~~~~~g~~-vi~~~l~~~~~~~~rHD~~ 299 (310)
T TIGR01826 221 DGFSLEDHVDALHRHLGKPFIDTVLVNTEKVPLEVLRNYFEEGSEQVEHDAEGLQKLGIE-VIFEDLLRAENGTIRHDPQ 299 (310)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCEEEECCCCCChHHHHHHHhccCCcccccHHHHHhCCCE-EEeccccccCCCCcccCHH
Confidence 9999999999999999987667654 5566788889888655556788899999999999 5577755444446899999
Q ss_pred HHHHHHHHHH
Q 011440 460 SLIQAIADLL 469 (485)
Q Consensus 460 ~La~aL~~l~ 469 (485)
+||++|++++
T Consensus 300 ~La~~l~~l~ 309 (310)
T TIGR01826 300 KLADALERIL 309 (310)
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 2
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=100.00 E-value=3e-78 Score=611.94 Aligned_cols=307 Identities=27% Similarity=0.395 Sum_probs=281.4
Q ss_pred EEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcCcCCC
Q 011440 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPL 141 (485)
Q Consensus 62 IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aLa~~~~~~~~~l~~Lf~~Rf~~ 141 (485)
||+||||||++++++|||+++.++|+||||+|||||||+||++||+++||||||||++||+.++ .+.++|+|||..
T Consensus 1 iv~igGGtGl~~ll~gLk~~~~~ltaIVtv~DdGgssg~LR~~~g~~~~GDir~~L~aLa~~~~----~~~~l~~~Rf~~ 76 (309)
T cd07044 1 VVVFGGGTGLPVLLRGLKEFPVEITAIVTVADDGGSSGELRNXQDIPPPGDLRNVLVALSDQED----RLEQLFQYRKEE 76 (309)
T ss_pred CEEEeccccHHHHHHHHHhcCCceEEEEECCcCCccchhHHhccCCCCCccHHHHHHHhCCCCh----HHHHHhcccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999875 588999999853
Q ss_pred ChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 011440 142 HPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFS 221 (485)
Q Consensus 142 ~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~~~gsl~~Ai~~~s 221 (485)
. .+++.+|++|||+|++++...++|.+||+.+|
T Consensus 77 ~-----------------------------------------------~~~l~gh~~GNL~l~~l~~~~~~~~~ai~~~~ 109 (309)
T cd07044 77 G-----------------------------------------------INEGLGHSLGNLAIAGXTSITGDFTDAIVELS 109 (309)
T ss_pred C-----------------------------------------------CCCccCCcHHHHHHHHHHHhccCHHHHHHHHH
Confidence 1 25799999999999999999999999999999
Q ss_pred hhcCCCCCCEEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccccCCCCcccccEEEEecCCCCcchhH
Q 011440 222 RVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301 (485)
Q Consensus 222 ~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv~l~~~~~~~~~~~ 301 (485)
++++|+ ++|+|| |+++++|+|+++||+.+.||++|.+ ..++|++|||.+.+
T Consensus 110 ~~l~v~--g~VlP~--t~~~v~l~a~~~dG~~v~gq~~i~~------------------~~~~I~~v~l~~~~------- 160 (309)
T cd07044 110 KVFNIK--GNILPS--SDDPVSLHAEXEDGTIVHGESFIPK------------------GEKKIDRVFLTPVD------- 160 (309)
T ss_pred HHhCCC--CEEEcC--cCCceEEEEEECCCceEeeeeeeec------------------CCCCceEEEEcCCC-------
Confidence 999998 899999 8999999999999999999999974 26799999998753
Q ss_pred HHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCC-CCCCcC
Q 011440 302 VIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRET 380 (485)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nl-t~dgET 380 (485)
.|+++|++++||++||+||||||||||||+|||+++||++||++++||||||||+ +|++||
T Consensus 161 ------------------~~~~~~~~l~AI~~ADlIvlgPGSlyTSI~P~Llv~gi~eAi~~s~a~kV~V~ni~t~pget 222 (309)
T cd07044 161 ------------------EASPSREVLEAIEKADNIVIGPGSLYTSILPNISVPGIREALKKTXAKKVYVSNIXTQPGET 222 (309)
T ss_pred ------------------CCCCCHHHHHHHHhCCEEEECCCcCHHHhhhhcCcHhHHHHHHhcCCCeEEECCCCCCCccc
Confidence 4899999999999999999999999999999999999999999999999999999 899999
Q ss_pred CCCCHHHHHHHHHHHhcccCCCCCC-CCCCCccccceeeeecCCCCcccCHHHHHhCCCEEEEeccceecCCCCCccCHH
Q 011440 381 SGFSASCFVTAITDALNRAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDPK 459 (485)
Q Consensus 381 ~g~sa~d~v~al~~~lg~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~~l~~~~~~~rhD~~ 459 (485)
+|||++||++++.+|+|....|.++ +....+.++++.|..+...++..|.+.++++|++ ++..++++..+.+.+||++
T Consensus 223 ~~~s~~~~v~~~~~~~~~~~lD~vlvn~~~~~~~~~~~y~~~~~~pv~~d~~~l~~~g~~-vi~~d~~~~~~~~~rhd~~ 301 (309)
T cd07044 223 DEYTSSDHAEALQRHLGRPFIDVVLVDEEDRSDEVXNSYRFDELVPVEVDFFALKRLGCR-VISADFLXEENGGSRHNSK 301 (309)
T ss_pred CCCCHHHHHHHHHHhcCCCcceEEEECCCCCchHHHHHHHhcCCceeccCHHHHHhCCCE-EEecCcEEcCCCCcccCHH
Confidence 9999999999999999987666654 5566788889988766666788999999999999 5688888776667899999
Q ss_pred HHHHHHHH
Q 011440 460 SLIQAIAD 467 (485)
Q Consensus 460 ~La~aL~~ 467 (485)
+||++|++
T Consensus 302 ~LA~~l~~ 309 (309)
T cd07044 302 ELSEIIVE 309 (309)
T ss_pred HHHHHHhC
Confidence 99999863
No 3
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=100.00 E-value=5.4e-78 Score=610.10 Aligned_cols=304 Identities=36% Similarity=0.538 Sum_probs=271.4
Q ss_pred EEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHh-cCcCC
Q 011440 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLL-GHRLP 140 (485)
Q Consensus 62 IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aLa~~~~~~~~~l~~Lf-~~Rf~ 140 (485)
||+||||||++++++|||+++.++|+||||+|||||||+||++||++|||||||||++||+.++. ...+| +|||.
T Consensus 1 iV~igGGtGl~~ll~gLk~~~~~itaIVtv~DdGGSSG~Lr~~~g~~~~GDiR~~L~aLa~~~~~----~~~~~~~~~~~ 76 (308)
T cd07187 1 IVAFGGGTGLSTLLRGLKKYTHNLTAIVTVTDDGGSSGRLRRELGIPAPGDIRNRLVALADDESL----AQKLFFLYRRF 76 (308)
T ss_pred CEEEeccccHHHHHHHHHhcCCceEEEEECCCCCccchhHHHHcCCCCCCcHHHHHHHhcCCCch----hHHHHHHhccc
Confidence 69999999999999999999999999999999999999999999999999999999999998763 33444 66664
Q ss_pred CChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHHhcCCHHHHHHHH
Q 011440 141 LHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLF 220 (485)
Q Consensus 141 ~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~~~gsl~~Ai~~~ 220 (485)
++++|++||+|||||+|+++++|+|.+||+.+
T Consensus 77 ------------------------------------------------~~~~l~gh~~GNl~L~a~~~~~g~~~~ai~~~ 108 (308)
T cd07187 77 ------------------------------------------------GDFDLRGHSLGNLILAALTLITGSFAEAILLL 108 (308)
T ss_pred ------------------------------------------------CCCccccCcHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34799999999999999999999999999999
Q ss_pred HhhcCCCCCCEEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccccCCCCcccccEEEEecCCCCcchh
Q 011440 221 SRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLH 300 (485)
Q Consensus 221 s~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv~l~~~~~~~~~~ 300 (485)
+++++++ ++|+|| |+++++|+|+++||++++||++|+++. ..++|++|||.+.
T Consensus 109 ~~~l~v~--g~VlP~--t~~~v~l~a~~~dG~~v~Ge~~i~~~~----------------~~~~I~~v~l~~~------- 161 (308)
T cd07187 109 SRLLGVR--GRVLPV--TNDPLHLVAELEDGTIVRGESRISHLE----------------LGSPIKRVFLEPP------- 161 (308)
T ss_pred HHHhCCC--cEEEcc--cCCceEEEEEECCCCEEEEEEEeecCC----------------CCCCceEEEEECC-------
Confidence 9999998 899999 899999999999999999999998741 2689999999875
Q ss_pred HHHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCC-CCCCc
Q 011440 301 EVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG-LEDRE 379 (485)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nl-t~dgE 379 (485)
.|+++|+|++||++||+||||||||||||+|||+++||++||++++||||||||+ +|++|
T Consensus 162 -------------------~~~~~~~a~~AI~~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi~~s~a~kV~v~N~~~~~ge 222 (308)
T cd07187 162 -------------------DPKANPEALEAIEEADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICNLMTQPGE 222 (308)
T ss_pred -------------------CCCCCHHHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHhCCCCEEEEecCCCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999 89999
Q ss_pred CCCCCHHHHHHHHHHHhcccCCCCCC-CCCCCccccceeeeecCCCCcccCHHHHHhCCCEEEEeccceecCCCCCccCH
Q 011440 380 TSGFSASCFVTAITDALNRAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDPKVGIIFDP 458 (485)
Q Consensus 380 T~g~sa~d~v~al~~~lg~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~~l~~~~~~~rhD~ 458 (485)
|++|+++||+++|.+|++....|.++ +....+.+++.+| .....++..|.+.++++|+++ +..+... .+...||||
T Consensus 223 t~~~~~~d~v~~i~~~~~~~~~d~vlv~~~~~~~~~~~~y-~~~~~~v~~d~~~~~~~g~~~-i~~~~~~-~~~~~rHD~ 299 (308)
T cd07187 223 TDGFTLSDHVRALLRHLGEGLLDVVLVNSERPPEEVLRRY-EEGSLPVELDEELLEKLGIRV-IEADLLS-EESGIRHDP 299 (308)
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEECCCCCchHHhhhh-hhcCCCcccCHHHHHhCCCEE-EEecccc-CCCCceECH
Confidence 99999999999999999966666543 4555667777777 333446788999999999995 4666544 456689999
Q ss_pred HHHHHHHH
Q 011440 459 KSLIQAIA 466 (485)
Q Consensus 459 ~~La~aL~ 466 (485)
++|+++|+
T Consensus 300 ~kLa~~l~ 307 (308)
T cd07187 300 EKLAAALL 307 (308)
T ss_pred HHHHHHHh
Confidence 99999986
No 4
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=100.00 E-value=1.2e-69 Score=548.10 Aligned_cols=286 Identities=32% Similarity=0.469 Sum_probs=230.7
Q ss_pred EEEEeCCcchhHHHHHHHcC-CCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHh-cCCCChhHHHHHHHhcCcC
Q 011440 62 LLVFSGGTAFNGVVEELKNI-TTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRL-SDESTPEALAVRRLLGHRL 139 (485)
Q Consensus 62 IVv~gGGTG~~~ll~gLk~~-~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aL-a~~~~~~~~~l~~Lf~~Rf 139 (485)
||+||||||++++++|||++ +.++|+||||+|||||||+||+++|+++|||||||||+| ++.+. .|.+||+|||
T Consensus 1 Ivvl~GGtG~~~ll~gL~~~~~~~lt~IV~~~DdggssG~LR~~~~~~~pGDir~~l~aL~a~~~~----~~~~l~~~rf 76 (300)
T PF01933_consen 1 IVVLGGGTGLSKLLRGLKRVPPHDLTAIVNTADDGGSSGRLRRELGIIPPGDIRNCLYALIADEEE----TWWGLFGYRF 76 (300)
T ss_dssp EEEEE-SCHHHHHHHHHTTS-SEEEEEEE--CT-SHHHHHHHHHCTSE-HHHHHHHHHHH-STTTC----HHHHHCT-B-
T ss_pred CEEEeCcccHHHHHHHHHHhCCCCeEEEEECccCCccchhhHhhcCCCCcchHHHHHHHhcCCCch----HHHHhhCCEe
Confidence 79999999999999999999 999999999999999999999999999999999999999 77643 6899999999
Q ss_pred CCChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHHhcCCHHHHHHH
Q 011440 140 PLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFL 219 (485)
Q Consensus 140 ~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~~~gsl~~Ai~~ 219 (485)
+.+ ++|+|++||+||||+++++.+.|+|.+||+.
T Consensus 77 ~~~----------------------------------------------~~~~l~~hslGNl~l~~~~~~~~~~~~ai~~ 110 (300)
T PF01933_consen 77 SGD----------------------------------------------GDFDLAGHSLGNLFLTALLEIGGSLSEAIDE 110 (300)
T ss_dssp CHC----------------------------------------------CSCSGTT-BHHHHHHHHHHHHHTSHHHHHHH
T ss_pred ccc----------------------------------------------CCccHhhCchhHHHHHHHHHHCCCHHHHHHH
Confidence 710 2489999999999999999999999999999
Q ss_pred HHhhcCCCCCCEEEeCccCCCceEEEEEEcCC----cEEeeeeeecCCCCCCCCccccccccCCCCcccccEEEEecC-C
Q 011440 220 FSRVSDIPSESQVLPVISTNDRLTLGCELGDG----TVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSS-E 294 (485)
Q Consensus 220 ~s~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG----~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv~l~~~-~ 294 (485)
+|++++|+ ++|+|| |+++++|+|+++|| +++.||++|+++ .+++|++|+|.+. .
T Consensus 111 ~~~~l~i~--~~VlP~--t~~~v~l~a~~~dG~~~~~~v~ge~~I~~~-----------------~~~~I~~v~~~~~~~ 169 (300)
T PF01933_consen 111 FSRLLGIR--GRVLPM--TDDPVHLVAELEDGLEFQEIVRGESWISHR-----------------CKPPIRRVFLEGAPE 169 (300)
T ss_dssp HHHHTT-S--SEEEES--BSS-EEEEEEETTSEEHH-EEESCCCCCST-----------------S-S-EEEEEEECTST
T ss_pred HHHHhCCC--CcEecC--cCCceEEEEEEcCCCcceeEEcceEeeccc-----------------CCCcccEEEEecCcc
Confidence 99999998 899999 89999999999999 999999999873 3789999999853 2
Q ss_pred CCcchhHHHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCC
Q 011440 295 GSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG 374 (485)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nl 374 (485)
.|+|+|+|++||++||+||||||||||||+|||+++||++||++++||||||||+
T Consensus 170 -------------------------~~~~~p~~l~AI~~AD~IiigPgs~~TSI~P~L~v~gi~~Ai~~s~a~kV~V~ni 224 (300)
T PF01933_consen 170 -------------------------EAKANPEALEAIEEADLIIIGPGSLYTSIIPNLLVPGIREAIRESKAPKVYVSNI 224 (300)
T ss_dssp -------------------------T--B-HHHHHHHHH-SEEEE-SS-CCCCCHHHHTSHHHHHHHHHSSSEEEEE-SS
T ss_pred -------------------------ccCCCHHHHHHHHhCCEEEEcCCCchhhhcccccchhHHHHHHhCCCCEEEEcCC
Confidence 6899999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCcCCCCCHHHHHHHHHHHhcccCCCCCCC-C-CCCccccceeeeecCCCCcccCHHHHHhCCCEEEEecc
Q 011440 375 -LEDRETSGFSASCFVTAITDALNRAYGDPQKS-L-KNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVH 445 (485)
Q Consensus 375 -t~dgET~g~sa~d~v~al~~~lg~~~~~~~~~-~-~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~ 445 (485)
+| |||+||++++|++++.+++++.+.|.+.. . ..+..+.+++|......++.+|....++++++. +..+
T Consensus 225 ~~~-Get~~~~~~~~v~~~~~~~~~~~~d~v~~~~~~~~d~~~~~~~~~~~~~~v~~d~~~~~~~~~~~-~~~~ 296 (300)
T PF01933_consen 225 MTD-GETDGLMAADHVEAIARGVGEHYIDYVDVNVIDEPDEDVLDRYEAEGSEPVTVDTEMDEKLGIEA-IAAD 296 (300)
T ss_dssp B---TTSTTHBHHHHHHHHHHHHSSCCTSEEEEEESESTHHHHHHHHHHTTSEBEBE-HHHHHHTTCEE-EEEH
T ss_pred CCC-CccCCCcHHHhHHHHHHhhhhhcCCEEEeCCccCCCHHHHHHHHHcCCCcccCChHHhhHhhHHH-HHHH
Confidence 67 99999999999999999999987655432 1 223445555554444445667777788888874 3444
No 5
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3e-66 Score=524.25 Aligned_cols=312 Identities=25% Similarity=0.374 Sum_probs=268.6
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCC-CCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhc-CCCChhHHHHHHH
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNIT-TRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLS-DESTPEALAVRRL 134 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~-~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aLa-~~~~~~~~~l~~L 134 (485)
.+++|||++|||||++++++|||++. .++|+||||+|||||||+||.++|+++|||+|||+.+|+ +.+. + ..+.+|
T Consensus 5 ~~~~kvvvlgGGtGl~~lL~gLk~~~~~~iTaIVtvaDdggssG~lr~~~~~~~~GD~rn~l~al~~~~e~-~-~~~e~L 82 (323)
T COG0391 5 AKKPKVVVLGGGTGLPKLLSGLKRLLPSEITAIVTVADDGGSSGRLRLDTGLYPPGDLRNCLAALGIDEET-F-RTHERL 82 (323)
T ss_pred ccCceEEEEcCCCCHHHHHHHHHhhcCceEEEEEEecccCCcCceeeeecCCCCChhHHHHHHHhccCCcc-h-hHHHHH
Confidence 67899999999999999999999998 799999999999999999999999999999999999999 5543 2 248999
Q ss_pred hcCcCCCChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHHhcCCHH
Q 011440 135 LGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLD 214 (485)
Q Consensus 135 f~~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~~~gsl~ 214 (485)
|+|||..+ .+.|++|++||++++|+.++.+++.
T Consensus 83 ~qyrf~~~-----------------------------------------------~g~L~gh~lgnl~l~a~~~~~~~~~ 115 (323)
T COG0391 83 FQYRFGEG-----------------------------------------------NGELGGHDLGNLMLAALSLISGSLS 115 (323)
T ss_pred HhcccCCC-----------------------------------------------CCcccCccchhHHHHHHHhhcCCHH
Confidence 99999731 2579999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCEEEeCccCCCceEEEEEEcCC-cEEeeeeeecCCCCCCCCccccccccCCCCcccccEEEEecC
Q 011440 215 AAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDG-TVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSS 293 (485)
Q Consensus 215 ~Ai~~~s~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG-~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv~l~~~ 293 (485)
+|++.++++|+++ ++|+|| |+++++|.|+++|| ..|+||+||.... ..+|++|+|.++
T Consensus 116 ~Ai~~~~~~l~v~--~~vlP~--sdd~v~l~a~~~dG~~~v~gE~~i~~~~-----------------~~~v~~V~~~~~ 174 (323)
T COG0391 116 EAIDALSKLLGVK--GRVLPM--SDDPVDLVAETEDGRRIVFGESWIAELG-----------------GPPVHRVRLEGP 174 (323)
T ss_pred HHHHHHHHHhCCC--ceEeec--CCCceeEEEEcCCCcEEEeeeechhhcC-----------------CCcceEEEEecC
Confidence 9999999999998 899999 89999999999999 6999999997531 334999999965
Q ss_pred CCCcchhHHHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeC
Q 011440 294 EGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLN 373 (485)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~N 373 (485)
+ +|.|+|+|++||++||+||||||||||||+|||++|||++||+++.+|||||||
T Consensus 175 ~-------------------------~~~a~~eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~~~ap~i~v~n 229 (323)
T COG0391 175 E-------------------------KPSAAPEAVEAIKEADLIVIGPGSLFTSILPILLLPGIAEALRETVAPIVYVCN 229 (323)
T ss_pred C-------------------------CCCCCHHHHHHHHhCCEEEEcCCccHhhhchhhchhHHHHHHHhCCCCEEEecc
Confidence 4 789999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCC-cCCCCCHHHHHHHHHHHhcccCCCCCC-CCCCCccccceeeeecCCCCcccCHHHHHhCCCEEEEeccceecC
Q 011440 374 G-LEDR-ETSGFSASCFVTAITDALNRAYGDPQK-SLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDP 450 (485)
Q Consensus 374 l-t~dg-ET~g~sa~d~v~al~~~lg~~~~~~~~-~~~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~~l~~~ 450 (485)
+ +|+| ||++|+++||++++.+|++..+.|.++ +....+.+...+|+.....++..|...+++.++.+.+ ...+...
T Consensus 230 ~~~~~g~~t~~~~~~d~i~~i~~~~g~~~iD~vivd~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~~-~~~~~~~ 308 (323)
T COG0391 230 LMTQAGKETDGLSVEDHIAALAQHYGAFVIDAVIVDNDDVEDEDLIRYVEEKGLEVEIDPTLLDREGLRRAL-ARNLLKL 308 (323)
T ss_pred CCCCCCcccccccHHHHHHHHHHHhCcccCcEEEECCCCccHHHHHHHhhhcCceeEechhhhhchhhHHHH-HHHhhhh
Confidence 9 8999 999999999999999999998656544 3333444444355544445677777778888875332 2323332
Q ss_pred CCCCccCHHHHHHHHH
Q 011440 451 KVGIIFDPKSLIQAIA 466 (485)
Q Consensus 451 ~~~~rhD~~~La~aL~ 466 (485)
+ .+||++++++.++
T Consensus 309 ~--~~h~~~~~~~~~~ 322 (323)
T COG0391 309 E--VRHDPKKLAEVLL 322 (323)
T ss_pred h--hhhhHHHHHHHhh
Confidence 2 7999999998875
No 6
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=100.00 E-value=1.5e-60 Score=479.51 Aligned_cols=290 Identities=17% Similarity=0.189 Sum_probs=245.3
Q ss_pred EEEEeCCcchhHHHHHHHcCC--CCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCCh---hH------HH
Q 011440 62 LLVFSGGTAFNGVVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTP---EA------LA 130 (485)
Q Consensus 62 IVv~gGGTG~~~ll~gLk~~~--~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aLa~~~~~---~~------~~ 130 (485)
||+||||||++++++|||++. .++|+||||+|||||||. +.|||||+|||+||+..+. |+ ..
T Consensus 1 Iv~lgGGtG~~~lL~GL~~~~~~~~lTaIVnvaDDgg~sG~-------~v~PDidtvlyaLa~~~~~~~~wG~~gdt~~~ 73 (303)
T cd07186 1 IVVLSGGTGGAKLLRGLKRVLDPEELTVVVNTGDDFWLSGL-------YVSPDLDTVLYTLAGLIDRETGWGIEGDTFNT 73 (303)
T ss_pred CEEEeCCccHHHHHHHHHhCCCCCceEEEEECCcCCcccCC-------eeCCcHHHHHHHhcCCCccccccCccCchHHH
Confidence 699999999999999999997 699999999999999995 4777999999999998642 22 24
Q ss_pred HHHHhcCcCCCChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHHhc
Q 011440 131 VRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFF 210 (485)
Q Consensus 131 l~~Lf~~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~~~ 210 (485)
+.+|++|||+ +|..+ +|.|+++|++||++|++++
T Consensus 74 ~~~l~~~g~~--------~~~~~-----------------------------------gd~dla~H~~rnl~L~ag~--- 107 (303)
T cd07186 74 LEALERLGGE--------EWFRL-----------------------------------GDRDRATHILRTEMLREGK--- 107 (303)
T ss_pred HHHHHHhCCc--------ccccC-----------------------------------CCccccccHHHHHHHHccC---
Confidence 5555666653 22221 4579999999999999974
Q ss_pred CCHHHHHHHHHhhcCCCCCCEEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccccCCCCcccccEEEE
Q 011440 211 QSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFY 290 (485)
Q Consensus 211 gsl~~Ai~~~s~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv~l 290 (485)
+|.+|++.+|++|+++ ++|+|| |+++++|+|+++||++++||++|.+. .+.+|++|+|
T Consensus 108 -~l~~a~~~l~~~L~v~--grVlPm--Sd~~v~l~a~~~dG~~~f~E~~V~~~-----------------~~~~i~~V~~ 165 (303)
T cd07186 108 -SLSEVTAELAERLGIK--ARILPM--SDDRVETRVVTDEGDLHFQEYWVRRR-----------------GEPEVRDVRF 165 (303)
T ss_pred -CHHHHHHHHHHHHCCC--CEEECC--cCCceEEEEEECCCCEEEEEEEEccc-----------------CCCCeEEEEe
Confidence 8999999999999998 899999 89999999999999999999999753 2679999999
Q ss_pred ecCCCCcchhHHHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEE
Q 011440 291 MSSEGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVL 370 (485)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~ 370 (485)
.+++ +|+|+|+|++||++||+||||||||||||+|||++|||++||++++|||||
T Consensus 166 ~~~e-------------------------~a~~~p~vl~AI~~AD~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~ 220 (303)
T cd07186 166 VGAE-------------------------EARPAPEVLEAIEDADLVIIGPSNPVTSIGPILALPGIREALRDKKAPVVA 220 (303)
T ss_pred CCcc-------------------------cCCCCHHHHHHHHhCCEEEECCCccHHHhhhhccchhHHHHHHhCCCCEEE
Confidence 8764 589999999999999999999999999999999999999999999999999
Q ss_pred EeCC-CCCCcCCCCCHHHHHHHHHHHhcccCCCCCCCCCCCccccceeeeecCCCCcccCHHHHHhCCCEEEEeccceec
Q 011440 371 LLNG-LEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICD 449 (485)
Q Consensus 371 I~Nl-t~dgET~g~sa~d~v~al~~~lg~~~~~~~~~~~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~~l~~ 449 (485)
|||+ +.. .++....++++++|.+.+ +.++...|.+++|.+++|+.+. .+...++..|++ |..++++|+
T Consensus 221 Vspiig~~------~v~Gpa~~~m~a~G~~~s--~~gva~~Y~~~~d~~vid~~D~--~~~~~~~~~g~~-v~~~~t~m~ 289 (303)
T cd07186 221 VSPIIGGK------AVSGPAAKLMAALGFEPS--AAGVAEIYGDLLDGFVIDEADR--ALADAIEALGIE-VSRTDTLMT 289 (303)
T ss_pred EcCCCCCC------CCCchHHHHHHHcCCCCc--HHHHHHHhhccccEEEEccccc--ccchhcccCCce-eEecCccCC
Confidence 9999 432 244445666888888753 4566778999999999998863 234567788999 568999998
Q ss_pred CCCCCccCHHHHHHHHH
Q 011440 450 PKVGIIFDPKSLIQAIA 466 (485)
Q Consensus 450 ~~~~~rhD~~~La~aL~ 466 (485)
...|..+||++++
T Consensus 290 ----~~~~~~~la~~~l 302 (303)
T cd07186 290 ----DEEDKIRLAREVL 302 (303)
T ss_pred ----CHHHHHHHHHHHh
Confidence 4788999998875
No 7
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=100.00 E-value=8.3e-60 Score=472.27 Aligned_cols=284 Identities=17% Similarity=0.180 Sum_probs=239.7
Q ss_pred EEEeCCcchhHHHHHHHcC--CCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCCh---hH------HHH
Q 011440 63 LVFSGGTAFNGVVEELKNI--TTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTP---EA------LAV 131 (485)
Q Consensus 63 Vv~gGGTG~~~ll~gLk~~--~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aLa~~~~~---~~------~~l 131 (485)
++||||||++++++|||++ +.++|+||||+|||||||.+ .|||||||||+||+.++. |+ ..+
T Consensus 1 ~~l~GGtG~~~lL~GLk~~~~~~~iTaIVnt~DD~~~sG~~-------v~PDidtvlyaLa~~~d~~~~wG~~~dt~~~~ 73 (297)
T TIGR01819 1 TVLSGGTGTPKLLQGLKEVLPDAELTVVVNTGEDVWVSGLL-------VCPDLDTVLYTLGGGIDRERWWGIADDTFHTH 73 (297)
T ss_pred CEEECCcCHHHHHHHHHhcCCCCceEEEEEcCcCCCCcCCE-------eCchHHHHHHHhCCCcccccccccccchHHHH
Confidence 5899999999999999999 78999999999999999985 667999999999997642 11 357
Q ss_pred HHHhcCcCCCChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHHhcC
Q 011440 132 RRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQ 211 (485)
Q Consensus 132 ~~Lf~~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~~~g 211 (485)
.+||+|||+ +|..+ +|.|+++|++||++|++++
T Consensus 74 ~~L~~~~~~--------~~~~l-----------------------------------Gd~dla~H~~r~~~L~ag~---- 106 (297)
T TIGR01819 74 ERLKELGVP--------EGLRL-----------------------------------GDRDRATHIVRTQMLRAGH---- 106 (297)
T ss_pred HHHHHhCCc--------ccccC-----------------------------------CcccccccHHHHHHHHccC----
Confidence 778888874 34333 2478999999999999974
Q ss_pred CHHHHHHHHHhhcCCCCCCEEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccccCCCCcccccEEEEe
Q 011440 212 SLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYM 291 (485)
Q Consensus 212 sl~~Ai~~~s~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv~l~ 291 (485)
+|++|++.+|++|+|+ ++|||| |+++++|+|+++||++++||++|.+.. +.+|++|+|.
T Consensus 107 ~l~~a~~~l~~~L~v~--g~VlPm--Sdd~V~l~a~~~dG~~~fqE~~V~~~~-----------------~~~i~~V~~~ 165 (297)
T TIGR01819 107 SLSEVTEALCDAFGIK--ARLLPM--TDDEVSTYVETDEGAMHFQEFWVRRRG-----------------EPPVEDVDFR 165 (297)
T ss_pred CHHHHHHHHHHHHCCC--CEEECC--CCCceEEEEEECCCCeEcceEeeeecC-----------------CCCeeEEEEC
Confidence 9999999999999998 899999 899999999999999999999997631 5799999997
Q ss_pred cCCCCcchhHHHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEE
Q 011440 292 SSEGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLL 371 (485)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I 371 (485)
.++ +++|+|+|++||++||+||||||||||||+|||++|||++||++ +|||||
T Consensus 166 g~e-------------------------~a~a~peal~AI~~AD~IIlGPgsp~TSI~P~LlVpgIreAL~~--a~vV~V 218 (297)
T TIGR01819 166 GAE-------------------------KASIAPKVLEAIRKEDNILIGPSNPITSIGPILSLPGIREALRD--KKVVAV 218 (297)
T ss_pred CCC-------------------------CCCCCHHHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHc--CCEEEE
Confidence 554 58999999999999999999999999999999999999999998 999999
Q ss_pred eCC-CCCCcCCCCCHHHHHHHHHHHhcccCCCCCCCCCCCccccceeeeecCCCCcccCHHHHHhCCCEEEEeccceecC
Q 011440 372 LNG-LEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSICDP 450 (485)
Q Consensus 372 ~Nl-t~dgET~g~sa~d~v~al~~~lg~~~~~~~~~~~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~~l~~~ 450 (485)
||+ +.. + ++....+++.++|.+. ++.++...|.+++|.+++|+.+ ...+.+.|++ |..++++|+
T Consensus 219 spiig~~-~-----v~GpA~~~m~a~g~e~--s~~gva~~Y~~~~d~~vid~~D-----~~~~~~~g~~-v~~~~t~m~- 283 (297)
T TIGR01819 219 SPIVGNA-P-----VSGPAGKLMAAVGVEV--SAAGVAEHYGDFLDVFVVDEVD-----KADEDRFGCH-VRRTDTLMT- 283 (297)
T ss_pred ccCcCCC-c-----CCChHHHHHHHcCCCc--cHHHHHHHhhccccEEEEecCc-----hhhhccCCce-eEecCcccC-
Confidence 999 543 2 2233455667677764 3456677899999999999884 4444455998 568999998
Q ss_pred CCCCccCHHHHHHHHH
Q 011440 451 KVGIIFDPKSLIQAIA 466 (485)
Q Consensus 451 ~~~~rhD~~~La~aL~ 466 (485)
...|..+||++++
T Consensus 284 ---~~~~~~~la~~~l 296 (297)
T TIGR01819 284 ---TLEDTARLARAVV 296 (297)
T ss_pred ---CHHHHHHHHHHHh
Confidence 4789999999876
No 8
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=100.00 E-value=5.5e-58 Score=460.62 Aligned_cols=290 Identities=17% Similarity=0.197 Sum_probs=242.7
Q ss_pred CeEEEEeCCcchhHHHHHHHcC--CCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCC---hhH------
Q 011440 60 PSLLVFSGGTAFNGVVEELKNI--TTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDEST---PEA------ 128 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~--~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDiR~~l~aLa~~~~---~~~------ 128 (485)
+|||+||||||++++++|||++ +.++|+||||+|||||||. ..|||||+|||+||+..+ +|+
T Consensus 1 ~~iv~lgGGtG~~~lL~GL~~~~~~~~iT~IVnt~DDggssG~-------~v~PDidtvlyaLa~~i~~~~~WG~~gdt~ 73 (303)
T PRK13606 1 MMITVLSGGTGTAKLLRGLKAVLPPEEITVVVNTGDDIWLHGL-------RVCPDLDTVMYTLAGLIDPERGWGIAGDTF 73 (303)
T ss_pred CeEEEEeCccCHHHHHHHHHhccCCCCeEEEEECCcCCCccCC-------EeCCChhhHHHHhhcccCcccccCccCchH
Confidence 5899999999999999999999 7899999999999999996 477799999999998833 332
Q ss_pred HHHHHHhcCcCCCChhhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcCCcCchhHHHHHHHHHH
Q 011440 129 LAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARV 208 (485)
Q Consensus 129 ~~l~~Lf~~Rf~~~~~~~~~ew~~i~~G~h~lw~~l~~~~~~~ir~~l~~f~~eil~~~~~~~dl~ghsiGNL~lag~~~ 208 (485)
..+.+|++|||+ ||.. -+|.|+++|++||++|+++
T Consensus 74 ~~~~~L~~~~~~--------e~~~-----------------------------------~Gd~dla~H~~rnl~L~ag-- 108 (303)
T PRK13606 74 HTHEELARLGGP--------EWFG-----------------------------------LGDRDRATHIVRTQLLRAG-- 108 (303)
T ss_pred HHHHHHHHcCCc--------cccc-----------------------------------CCCccccccHHHHHHHHcc--
Confidence 356677777764 2322 2457999999999999987
Q ss_pred hcCCHHHHHHHHHhhcCCCCCCEEEeCccCCCceEEEEEEcCCcEEeeeeeecCCCCCCCCccccccccCCCCcccccEE
Q 011440 209 FFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRV 288 (485)
Q Consensus 209 ~~gsl~~Ai~~~s~~lgi~~~g~VlP~~~T~~~v~L~a~l~dG~~v~GE~~I~~~~~~~~~~v~k~~~~~~~~~~~I~rv 288 (485)
++|.+|++.+|++|+|+ ++|+|| |+++++|+|+++||++++||++|.+. .+.+|++|
T Consensus 109 --~~l~~a~~~l~~~l~v~--~~VlPm--Sd~~v~l~a~~~~~~i~fqE~~V~~~-----------------~~~~v~~v 165 (303)
T PRK13606 109 --YPLSEVTEALCDRLGVG--ARLLPM--SDDPVETHVVTDEGELHFQEYWVRRR-----------------GEPPVLDV 165 (303)
T ss_pred --CCHHHHHHHHHHHhCCC--CEEECC--cCCceEEEEEECCCcEEeeeEEeecc-----------------CCCCeEEE
Confidence 79999999999999998 899999 89999999999999999999999863 26799999
Q ss_pred EEecCCCCcchhHHHHHHhHhhhhcccccccCCCCCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCE
Q 011440 289 FYMSSEGSNLLHEVIAVVLFYWFSYLTQQMVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPK 368 (485)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~k 368 (485)
+|.+++ .++|+|+|++||++||+||||||||||||+|||++|||++|| ++|||
T Consensus 166 ~~~~~~-------------------------~a~a~p~vl~AI~~AD~IiiGPgnp~TSI~P~L~v~gi~eAL--~~a~v 218 (303)
T PRK13606 166 VFVGAE-------------------------KAKPAPGVLEAIEEADAVIIGPSNPVTSIGPILAVPGIREAL--TEAPV 218 (303)
T ss_pred EEeCcc-------------------------cCCCCHHHHHHHHhCCEEEECCCccHHhhchhccchhHHHHH--hCCCE
Confidence 998764 588999999999999999999999999999999999999999 88999
Q ss_pred EEEeCC-CCCCcCCCCCHHHHHHHHHHHhcccCCCCCCCCCCCccccceeeeecCCCCcccCHHHHHhCCCEEEEeccce
Q 011440 369 VLLLNG-LEDRETSGFSASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGEIPLDIQCLASQGIFDVITVHSI 447 (485)
Q Consensus 369 V~I~Nl-t~dgET~g~sa~d~v~al~~~lg~~~~~~~~~~~~~~~~~l~~~~~d~~~~v~~D~~~L~~~Gi~~vi~~~~l 447 (485)
|||||+ +...+ +.....++.+.|.+.+ ..++...|.+++|.+++|..+.. ++..|++ |+.++++
T Consensus 219 V~Vsp~Ig~~~v------~GPA~~lm~a~g~e~s--~~gva~~Y~~~~D~~vid~~D~~------~~~~g~~-v~~~~t~ 283 (303)
T PRK13606 219 VAVSPIIGGAPV------SGPAAKLMAAIGVEVS--AAGVAEHYGDLLDGFVIDEADAA------IEVPGVE-VLRTDTL 283 (303)
T ss_pred EEEcCCCCCCcC------CChhHHHHHHcCCcch--HHHHHHhccccceEEEECCCccc------cccCCce-EEEeccC
Confidence 999998 54322 2223445666666542 34556678999999999987531 1567888 5688999
Q ss_pred ecCCCCCccCHHHHHHHHHHHHh
Q 011440 448 CDPKVGIIFDPKSLIQAIADLLG 470 (485)
Q Consensus 448 ~~~~~~~rhD~~~La~aL~~l~~ 470 (485)
|+ ...|..+||+++++++.
T Consensus 284 m~----~~~~~~~la~~~l~~~~ 302 (303)
T PRK13606 284 MT----DPEDTARLARAILELAG 302 (303)
T ss_pred CC----CHHHHHHHHHHHHHHhc
Confidence 88 47899999999998764
No 9
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=63.15 E-value=7.9 Score=36.03 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=29.5
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
-.+.+|+++|||.=..+.++.|.+.+.++++|
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 46899999999999999999999999999977
No 10
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=62.85 E-value=6.7 Score=36.45 Aligned_cols=42 Identities=31% Similarity=0.337 Sum_probs=30.8
Q ss_pred HHHHHHhcCCEEEEcCCCc-cccccccccchhHHHHHhcCCCCE--EEEeCC
Q 011440 326 AVLDQLNAVDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 374 (485)
Q Consensus 326 ~al~AI~~ADlII~gPGSl-yTSI~P~Llv~GI~~AI~~s~a~k--V~I~Nl 374 (485)
..-+|..++|.||+=||.+ .||+ -++|||+....|+ |=++|+
T Consensus 59 ~I~~a~~~~dgiIINpga~thtS~-------Ai~DAl~~~~~P~vEVHiSNi 103 (140)
T PF01220_consen 59 WIHEARDDVDGIIINPGAYTHTSI-------AIRDALKAISIPVVEVHISNI 103 (140)
T ss_dssp HHHHHTCTTSEEEEE-GGGGHT-H-------HHHHHHHCCTS-EEEEESS-G
T ss_pred HHHHHHhhCCEEEEccchhccccH-------HHHHHHHcCCCCEEEEEcCCc
Confidence 3334555679999999999 9999 6899999999887 566887
No 11
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=57.78 E-value=31 Score=32.09 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=33.9
Q ss_pred HHHHHHhc----CCEEEEcCCCc-cccccccccchhHHHHHhcCCCCE--EEEeCC
Q 011440 326 AVLDQLNA----VDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 374 (485)
Q Consensus 326 ~al~AI~~----ADlII~gPGSl-yTSI~P~Llv~GI~~AI~~s~a~k--V~I~Nl 374 (485)
+.++.|.+ +|.||+=||-+ .||+ -++|||+....|+ |=++|+
T Consensus 54 elid~I~~a~~~~dgiIINpga~THtSv-------Ai~DAl~~~~~P~VEVHiSNi 102 (140)
T cd00466 54 ELIDWIHEARDGADGIIINPGAYTHTSI-------ALRDALAAVSIPVIEVHISNI 102 (140)
T ss_pred HHHHHHHHhhccCcEEEEcchHHHHHHH-------HHHHHHHcCCCCEEEEecCCc
Confidence 44555544 58999999999 6998 4899999998887 777998
No 12
>PTZ00058 glutathione reductase; Provisional
Probab=57.12 E-value=9.6 Score=42.67 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
..-.|++||||.|....+..+.+++.+++.|
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValI 77 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALV 77 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence 3446999999999999999999998774443
No 13
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=56.15 E-value=8.7 Score=32.92 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=30.4
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCC
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVS 92 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~ 92 (485)
-++.+|+++|||--..+=++.|.+.+.++|+|-+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 367899999999999999999999999999887664
No 14
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=55.64 E-value=16 Score=34.25 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=34.1
Q ss_pred HHHHHHhc----CCEEEEcCCCc-cccccccccchhHHHHHhcCCCCE--EEEeCC
Q 011440 326 AVLDQLNA----VDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 374 (485)
Q Consensus 326 ~al~AI~~----ADlII~gPGSl-yTSI~P~Llv~GI~~AI~~s~a~k--V~I~Nl 374 (485)
+.++.|.+ +|.||+=||-+ +||| -++|||+..+.|+ |=++|+
T Consensus 56 elId~I~~a~~~~dgiiINpga~THtSi-------Al~DAl~~~~~P~VEVHiSNi 104 (146)
T PRK05395 56 ELIDRIHEARDGADGIIINPGAYTHTSV-------ALRDALAAVSIPVIEVHLSNI 104 (146)
T ss_pred HHHHHHHhcccCCcEEEECchHHHHHHH-------HHHHHHHcCCCCEEEEecCCc
Confidence 44555544 58999999999 7998 4899999998887 677898
No 15
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=55.13 E-value=18 Score=43.31 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=35.0
Q ss_pred cccccCCCCC--CCCeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCC
Q 011440 48 HCRCFSNPTH--TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSD 93 (485)
Q Consensus 48 ~~~~~~~~~~--~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~D 93 (485)
..-|++++-. .+.+|+++|||.|.+-+.+.|++.+.++++|.. .|
T Consensus 880 v~GPLG~pF~i~~~k~vLLVgGGVGiApLak~Lk~~G~~V~~~~~-~d 926 (1028)
T PRK06567 880 LMGPTGSPLEIPQNKKIVIVDFEVGNIGLLKVLKENNNEVIFVTY-PD 926 (1028)
T ss_pred EEcccCCCCCCCCCCeEEEEEccccHHHHHHHHHHCCCeEEEEEc-CC
Confidence 3445555432 246899999999999999999999999999984 35
No 16
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=52.90 E-value=17 Score=34.00 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=31.8
Q ss_pred HHhcCCEEEEcCCCc-cccccccccchhHHHHHhcCCCCE--EEEeCC
Q 011440 330 QLNAVDCIIYAMGSL-FTSICPSLVLLGIGEIISSRSCPK--VLLLNG 374 (485)
Q Consensus 330 AI~~ADlII~gPGSl-yTSI~P~Llv~GI~~AI~~s~a~k--V~I~Nl 374 (485)
|..++|.||+=||-+ +||+ -++|||+..+.|+ |=++|+
T Consensus 64 a~~~~dgiIINpga~THtSi-------Al~DAl~~~~~P~VEVHiSNi 104 (146)
T PRK13015 64 ARGDVAGIVINPGAYTHTSV-------AIRDALAALELPVIEVHISNV 104 (146)
T ss_pred hhhcCCEEEEcchHHhhhHH-------HHHHHHHcCCCCEEEEEcCCc
Confidence 334468999999999 7998 4899999998887 677898
No 17
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=51.47 E-value=14 Score=39.24 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=25.3
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
...+|||++|||.|.-.+++.|.....++|.|
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI 39 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVI 39 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEE
Confidence 45679999999999988888886545666666
No 18
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=51.34 E-value=15 Score=35.60 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=28.6
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEEe
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVt 90 (485)
-.+++|+++|||.-...-++.|.+.+.++|+|-+
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 3578999999999888888999999998887643
No 19
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=50.11 E-value=17 Score=35.11 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=29.0
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
-.+.+|+++|||.=....++.|.+.+.++|+|-
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 467899999999999999999999999988773
No 20
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=48.64 E-value=19 Score=35.89 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=32.3
Q ss_pred CCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCC
Q 011440 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSD 93 (485)
Q Consensus 56 ~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~D 93 (485)
..++.+|+|+|||.-..+=++.|.+++.++|+|-+...
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 35688999999999888888999999999999877643
No 21
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=45.90 E-value=22 Score=28.54 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=27.8
Q ss_pred eEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCC
Q 011440 61 SLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDD 94 (485)
Q Consensus 61 ~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DD 94 (485)
|||++|||--.-.++..|++++.++|. +...|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtl-i~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTL-IERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEE-EESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEE-Eeccch
Confidence 799999999999999999999888865 445555
No 22
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=45.24 E-value=28 Score=35.92 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=33.3
Q ss_pred hhcccccCCCCCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 46 ATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 46 ~~~~~~~~~~~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
.-+|+ ..+|..+++||++|||.+.-..+..|++.+.+++.|
T Consensus 7 ~~~~~--~~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~li 47 (352)
T PRK12770 7 AFMCK--EKPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVY 47 (352)
T ss_pred hhhcc--cCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence 34666 456788899999999999988888899888887754
No 23
>PRK01581 speE spermidine synthase; Validated
Probab=43.84 E-value=12 Score=39.98 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=20.2
Q ss_pred hcccccCCCC----CCCCeEEEEeCCcchhHHHHHHHcC
Q 011440 47 THCRCFSNPT----HTQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 47 ~~~~~~~~~~----~~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
.+-+.+-++| ....+|+++|||+|. +++.+.++
T Consensus 135 iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~--tlrelLk~ 171 (374)
T PRK01581 135 IYHEALVHPIMSKVIDPKRVLILGGGDGL--ALREVLKY 171 (374)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCHHH--HHHHHHhc
Confidence 3444444443 345699999999998 34444444
No 24
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=42.76 E-value=25 Score=38.09 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=40.0
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcCC--CCeEEEEeCCCCCcchHHHHHHc-CCCCCCcHHHHHHHh
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVL-GGPAVGDIRSRCLRL 120 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~~--~~lt~IVtv~DDGGSSG~LR~~~-g~~~~GDiR~~l~aL 120 (485)
..+|||++|||-|.-.+++.|.+.. .++|. |.-.|----+..|-+.. |.+.+++|+--+-.+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itL-Vd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~ 66 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITL-VDRRDYHLFTPLLYEVATGTLSESEIAIPLRAL 66 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEE-EeCCCccccchhhhhhhcCCCChhheeccHHHH
Confidence 4689999999999999999999875 45554 44445444444444444 445555554444333
No 25
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=41.20 E-value=45 Score=30.72 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCEEEEcCCCcccccccccc----chhHHHHHhcCCCCEEEEeCCCCC---CcCCCCCHHHHHHHHHH
Q 011440 325 SAVLDQLNAVDCIIYAMGSLFTSICPSLV----LLGIGEIISSRSCPKVLLLNGLED---RETSGFSASCFVTAITD 394 (485)
Q Consensus 325 p~al~AI~~ADlII~gPGSlyTSI~P~Ll----v~GI~~AI~~s~a~kV~I~Nlt~d---gET~g~sa~d~v~al~~ 394 (485)
..++-...+||+|+ || ..-++|+=+ -|-|++||.+|+|+|++++=.... --+...++..+++.+.+
T Consensus 56 NaIv~n~~~aDiIv-Gp---igIv~a~smlGEiTp~mA~AI~~S~A~KiLiPl~~~~~~ivG~~~~pl~~li~~~v~ 128 (131)
T PF12953_consen 56 NAIVVNARKADIIV-GP---IGIVIANSMLGEITPAMAEAIAQSPAKKILIPLNRCNIEIVGVENEPLPHLIDEAVE 128 (131)
T ss_pred chheeccCCCCEEE-Cc---HHHhccCcccccccHHHHHHHhcCCCCEEEEeecCCCCEEECCCCCCHHHHHHHHHH
Confidence 34556677899876 33 233455544 456789999999999998422111 22346678888877665
No 26
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=41.09 E-value=39 Score=31.51 Aligned_cols=42 Identities=31% Similarity=0.444 Sum_probs=33.9
Q ss_pred HHHHHHhc----CCEEEEcCCCcc-ccccccccchhHHHHHhcCCCCE--EEEeCC
Q 011440 326 AVLDQLNA----VDCIIYAMGSLF-TSICPSLVLLGIGEIISSRSCPK--VLLLNG 374 (485)
Q Consensus 326 ~al~AI~~----ADlII~gPGSly-TSI~P~Llv~GI~~AI~~s~a~k--V~I~Nl 374 (485)
+.++.|.+ +|.||+=||-+- ||+ -++|||+....|+ |=++|+
T Consensus 54 elId~i~~a~~~~dgiIINpga~THtSi-------Al~DAl~~~~~P~vEVHiSNi 102 (141)
T TIGR01088 54 QLIDKIHEAEGQYDGIIINPGALTHTSV-------ALRDALAAVSLPVVEVHLSNV 102 (141)
T ss_pred HHHHHHHhccccCCEEEEcChHHhhhHH-------HHHHHHHcCCCCEEEEEcCCc
Confidence 44555554 489999999987 998 4899999998887 677998
No 27
>PLN00016 RNA-binding protein; Provisional
Probab=40.84 E-value=26 Score=36.50 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=25.8
Q ss_pred CCCeEEEE---eCCcc--hhHHHHHHHcCCCCeEEEEeC
Q 011440 58 TQPSLLVF---SGGTA--FNGVVEELKNITTRVAHVLPV 91 (485)
Q Consensus 58 ~~~~IVv~---gGGTG--~~~ll~gLk~~~~~lt~IVtv 91 (485)
..++|+++ ||||| ...+++.|.+.+.++++++.-
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 34566655 48999 888999999888888877753
No 28
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=40.82 E-value=24 Score=32.42 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=25.1
Q ss_pred eEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 61 ~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
+||++|||.|.-..+..|++...+++.|
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEE
Confidence 6999999999999999999777777777
No 29
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=40.55 E-value=37 Score=32.02 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=28.8
Q ss_pred CeEEEE--eCCcchhHHHHHHHcCCCC--eEEEEeCCCCCc
Q 011440 60 PSLLVF--SGGTAFNGVVEELKNITTR--VAHVLPVSDDGG 96 (485)
Q Consensus 60 ~~IVv~--gGGTG~~~ll~gLk~~~~~--lt~IVtv~DDGG 96 (485)
+||++| |+|+-+..++..++.-..+ +..||+-.|+..
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~ 41 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKPR 41 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 589999 7777777788888877765 778887777753
No 30
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=39.72 E-value=43 Score=31.40 Aligned_cols=37 Identities=8% Similarity=0.244 Sum_probs=25.7
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcC-----CCCeEEEEeCCC
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNI-----TTRVAHVLPVSD 93 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~-----~~~lt~IVtv~D 93 (485)
....++|+++||||++-++.=++++ ..+++.+..+-+
T Consensus 95 ~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~~~v~l~~~~r~ 136 (223)
T cd00322 95 EESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGART 136 (223)
T ss_pred ccCCcEEEEecCCchhHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence 4456899999999999887766654 234555554433
No 31
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=39.68 E-value=32 Score=36.92 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=29.1
Q ss_pred CCCCCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 53 SNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 53 ~~~~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
..+|..+++|+++|||-+.-..+..|.+.+.+++.+
T Consensus 134 ~~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~li 169 (457)
T PRK11749 134 KRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIF 169 (457)
T ss_pred CCCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 456678899999999988888888888887776554
No 32
>PRK07236 hypothetical protein; Provisional
Probab=39.40 E-value=32 Score=35.77 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=27.6
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
+.++|+++|||-+...++..|++.+.+++.+=
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 35799999999999999999999988766554
No 33
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=39.20 E-value=41 Score=32.05 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=24.1
Q ss_pred CeEEEEeCCcchhHHHHHHHcC------CCCeEEEEeCC
Q 011440 60 PSLLVFSGGTAFNGVVEELKNI------TTRVAHVLPVS 92 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~------~~~lt~IVtv~ 92 (485)
.++|+++||||+.-++.-++++ ..+++.+..+-
T Consensus 105 ~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r 143 (234)
T cd06183 105 KHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANR 143 (234)
T ss_pred cEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecC
Confidence 7899999999998888766654 23455555543
No 34
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=39.16 E-value=49 Score=28.08 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=41.9
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCCcchH-HHHHHcCCCCCCcHHHHHH
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTA-EIVRVLGGPAVGDIRSRCL 118 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDGGSSG-~LR~~~g~~~~GDiR~~l~ 118 (485)
.||.++|.|......+..+.+...+. -|+.+.|...... ...+.+|.+...|++..+-
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~ 59 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIPVYTDLEELLA 59 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSEEESSHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhcccchhHHHHHHH
Confidence 37999999999999999999885444 3334455544433 4578899999999886443
No 35
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=38.60 E-value=32 Score=33.86 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=30.3
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCC
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVS 92 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~ 92 (485)
-.+++||++|||.-...=++-|.+.+.++++|-+-.
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 467899999999999988899999999988875443
No 36
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=37.38 E-value=51 Score=31.97 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=26.0
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC-----CCCeEEEEeCCC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI-----TTRVAHVLPVSD 93 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~-----~~~lt~IVtv~D 93 (485)
..++++++||||.+-++.=|+++ ..+++.+..+-+
T Consensus 122 ~~~~v~iagG~Giap~~s~l~~~~~~~~~~~i~l~~~~r~ 161 (243)
T cd06216 122 PPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLLYYART 161 (243)
T ss_pred CCCEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEEcCC
Confidence 56899999999999988776655 245666665543
No 37
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=37.24 E-value=53 Score=31.52 Aligned_cols=37 Identities=5% Similarity=0.189 Sum_probs=24.5
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC-----CCCeEEEEeCCCC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI-----TTRVAHVLPVSDD 94 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~-----~~~lt~IVtv~DD 94 (485)
...++++++||||+.-++.=++.+ ..+++.+..+-+.
T Consensus 101 ~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~r~~ 142 (231)
T cd06191 101 PPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSARTP 142 (231)
T ss_pred CCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEecCCH
Confidence 346899999999997776555443 3456665555443
No 38
>PRK06753 hypothetical protein; Provisional
Probab=37.16 E-value=33 Score=35.16 Aligned_cols=30 Identities=10% Similarity=0.010 Sum_probs=26.1
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
++|+++|||-+...++..|++.+.+++.+=
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEe
Confidence 589999999999999999999988865543
No 39
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=36.98 E-value=43 Score=36.31 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=28.8
Q ss_pred CCCCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 54 NPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 54 ~~~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
..+..+.+||++|||.+.-..+..|++.+.+++.+
T Consensus 138 ~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vi 172 (471)
T PRK12810 138 PVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVF 172 (471)
T ss_pred CcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 34567789999999999888999999888876554
No 40
>PRK08163 salicylate hydroxylase; Provisional
Probab=36.92 E-value=37 Score=35.14 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
..+|+++|||-+...++..|++.+.+++.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~ 33 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLL 33 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999998887665
No 41
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=36.82 E-value=31 Score=36.89 Aligned_cols=29 Identities=7% Similarity=0.242 Sum_probs=23.2
Q ss_pred CeEEEEeCCcchhHHHHHHHcCC--CCeEEE
Q 011440 60 PSLLVFSGGTAFNGVVEELKNIT--TRVAHV 88 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~--~~lt~I 88 (485)
+|||++|||.|.-..++.|++.. .+++.|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li 32 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIF 32 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEE
Confidence 48999999999999999998774 344443
No 42
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=36.41 E-value=23 Score=31.75 Aligned_cols=21 Identities=14% Similarity=0.572 Sum_probs=18.1
Q ss_pred eEEEEeCCcchhHHHHHHHcC
Q 011440 61 SLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 61 ~IVv~gGGTG~~~ll~gLk~~ 81 (485)
+||+++||+|..-++.-|.++
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l 23 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDL 23 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEecCcCHHHHHHHHHHH
Confidence 689999999999888877655
No 43
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=35.71 E-value=50 Score=34.45 Aligned_cols=51 Identities=18% Similarity=0.084 Sum_probs=35.2
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcC-C-CCeEEE----EeCCCCCcchHHHHHHcCC
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNI-T-TRVAHV----LPVSDDGGSTAEIVRVLGG 107 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~-~-~~lt~I----Vtv~DDGGSSG~LR~~~g~ 107 (485)
.....|+|+|||.-...++..|.+. + .+++.| +.....|.++|.+|..++.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~ 84 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLY 84 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccC
Confidence 3456899999998777888888875 5 366555 2344566777777665543
No 44
>PRK06847 hypothetical protein; Provisional
Probab=35.70 E-value=40 Score=34.52 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=26.5
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
..+|+++|||-+...++..|++.+.+++.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~ 33 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLV 33 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999998886655
No 45
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=35.45 E-value=41 Score=35.00 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=27.2
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
..+|+++|||-+...++..|.+.+.+++.|=
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E 48 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIE 48 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEe
Confidence 4689999999999999999999988876664
No 46
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=35.33 E-value=31 Score=34.16 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=25.9
Q ss_pred eEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCC
Q 011440 61 SLLVFSGGTAFNGVVEELKNITTRVAHVLPVSD 93 (485)
Q Consensus 61 ~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~D 93 (485)
+|+++|||-+...++..|++.+.+++.|=--.+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999988666654433
No 47
>PRK09932 glycerate kinase II; Provisional
Probab=35.17 E-value=50 Score=35.52 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=40.4
Q ss_pred HHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCC
Q 011440 329 DQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG 374 (485)
Q Consensus 329 ~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nl 374 (485)
+.|+.||+||-|=|++-..-+--=.+-||.+.=++...|+|.||=-
T Consensus 280 ~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 280 QAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred HHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecc
Confidence 6789999999999999988888888999999877788999998754
No 48
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=35.09 E-value=54 Score=31.12 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.5
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCC-----CCeEEEEeCCC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVSD 93 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~-----~~lt~IVtv~D 93 (485)
..++++++||||+.-++.=|+.+. .+++.+..+.+
T Consensus 98 ~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~ 137 (224)
T cd06187 98 DRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGART 137 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCC
Confidence 568999999999998887776652 46777766554
No 49
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=34.79 E-value=60 Score=31.59 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCC--CCeEEEEeCCCC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNIT--TRVAHVLPVSDD 94 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~--~~lt~IVtv~DD 94 (485)
..++|+|+||||++.++.-|+... .+++.+.-+-+.
T Consensus 120 ~~~~vlia~GtGi~p~~~il~~~~~~~~~~~~~~~~~~ 157 (235)
T cd06193 120 ADWYLLAGDETALPAIAAILEELPADARGTALIEVPDA 157 (235)
T ss_pred cceEEEEeccchHHHHHHHHHhCCCCCeEEEEEEECCH
Confidence 458999999999999988888764 356666655554
No 50
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=34.24 E-value=44 Score=35.23 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=26.2
Q ss_pred CCeEEEEeCCcch----hHHHHHHHcCCCCeEEEE
Q 011440 59 QPSLLVFSGGTAF----NGVVEELKNITTRVAHVL 89 (485)
Q Consensus 59 ~~~IVv~gGGTG~----~~ll~gLk~~~~~lt~IV 89 (485)
-|||++.+||||. +.++++|++...++..+-
T Consensus 5 ~~ki~i~aGgtsGhi~paal~~~l~~~~~~~~~~g 39 (385)
T TIGR00215 5 IPTIALVAGEASGDILGAGLRQQLKEHYPNARFIG 39 (385)
T ss_pred CCeEEEEeCCccHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3899999999987 689999998777777664
No 51
>PRK07538 hypothetical protein; Provisional
Probab=34.01 E-value=38 Score=35.61 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=25.5
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
++|+++|||-+...++..|++.+.+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~ 29 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVF 29 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 58999999999999999999988776554
No 52
>PRK12831 putative oxidoreductase; Provisional
Probab=33.30 E-value=52 Score=35.77 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=28.8
Q ss_pred CCCCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 54 NPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 54 ~~~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
..+.++++|+++|||-+.-..+..|++.+.+++.+
T Consensus 135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~ 169 (464)
T PRK12831 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIF 169 (464)
T ss_pred CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 45678999999999988888888899888876544
No 53
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=33.14 E-value=45 Score=34.69 Aligned_cols=36 Identities=17% Similarity=0.383 Sum_probs=27.0
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCC
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDG 95 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDG 95 (485)
++||++|||.|.-.+++.|++...+...+|=.-|++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 589999999999999999998765544433334553
No 54
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=32.82 E-value=69 Score=32.09 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCEEEEcCCCccccc
Q 011440 325 SAVLDQLNAVDCIIYAMGSLFTSI 348 (485)
Q Consensus 325 p~al~AI~~ADlII~gPGSlyTSI 348 (485)
.+++++|.++|+||+|-|+++...
T Consensus 56 ~~~~~~l~~~D~vI~gGG~l~~d~ 79 (298)
T TIGR03609 56 LAVLRALRRADVVIWGGGSLLQDV 79 (298)
T ss_pred HHHHHHHHHCCEEEECCcccccCC
Confidence 378899999999999999999643
No 55
>PRK07588 hypothetical protein; Provisional
Probab=32.80 E-value=41 Score=34.90 Aligned_cols=30 Identities=10% Similarity=-0.018 Sum_probs=26.3
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
++|+++|||-+...++..|.+.+.+++.+=
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E 30 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIE 30 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEe
Confidence 589999999999999999999988866654
No 56
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=32.63 E-value=1.1e+02 Score=31.19 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=68.5
Q ss_pred CCcccccEEEEecCCCCcchhHHHHHHhHhhh-hcccccccCC---CCCHHHHHHHhcC---------CEEEEcCCCccc
Q 011440 280 ALPSRIKRVFYMSSEGSNLLHEVIAVVLFYWF-SYLTQQMVFP---TANSAVLDQLNAV---------DCIIYAMGSLFT 346 (485)
Q Consensus 280 ~~~~~I~rv~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p---~~~p~al~AI~~A---------DlII~gPGSlyT 346 (485)
++|..+++|-+..+...+..+++.+.+-..|. +.+.=-++.+ .+.++.++||+.+ |+||++=|-==.
T Consensus 9 ~lP~~p~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~ 88 (319)
T PF02601_consen 9 PLPKFPKRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI 88 (319)
T ss_pred CCCCCCCEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh
Confidence 46788889988887766677777666655553 1111001111 3567777887755 789887653222
Q ss_pred cccccccchhHHHHHhcCCCCEEEEeCCCCCCcCCCCCHHHHHHHH
Q 011440 347 SICPSLVLLGIGEIISSRSCPKVLLLNGLEDRETSGFSASCFVTAI 392 (485)
Q Consensus 347 SI~P~Llv~GI~~AI~~s~a~kV~I~Nlt~dgET~g~sa~d~v~al 392 (485)
.=+-.+-=..|..||.+++.|+ |+=+|.. ..+|+.|+|.-.
T Consensus 89 eDL~~FN~e~varai~~~~~Pv--isaIGHe---~D~ti~D~vAd~ 129 (319)
T PF02601_consen 89 EDLWAFNDEEVARAIAASPIPV--ISAIGHE---TDFTIADFVADL 129 (319)
T ss_pred HHhcccChHHHHHHHHhCCCCE--EEecCCC---CCchHHHHHHHh
Confidence 2333556678999999999885 3445433 245899988754
No 57
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=32.35 E-value=30 Score=37.56 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhhcCCC-CCCEEEeCccCCCceEEEEEEcCCcEEeeeeeecC
Q 011440 212 SLDAAIFLFSRVSDIP-SESQVLPVISTNDRLTLGCELGDGTVIRGQNEISH 262 (485)
Q Consensus 212 sl~~Ai~~~s~~lgi~-~~g~VlP~~~T~~~v~L~a~l~dG~~v~GE~~I~~ 262 (485)
.|++.+...+.-.||+ -+++|.=+...++.-...+.+++|..+.+..-|..
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDA 206 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDA 206 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEEC
Confidence 6788888888888874 00122211111222234677888888888888875
No 58
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=32.30 E-value=41 Score=35.66 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=23.7
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCC--CeEEE
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITT--RVAHV 88 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~--~lt~I 88 (485)
+|||++|||.|.-..+..|++... ++|.|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli 31 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVY 31 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEE
Confidence 489999999999999999998754 45544
No 59
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=31.69 E-value=74 Score=30.92 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=25.5
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC---CCCeEEEEeCCC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLPVSD 93 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~---~~~lt~IVtv~D 93 (485)
..++++++||||++-++.=++++ ..+++.+..+-+
T Consensus 97 ~~~~lliagGtGiap~~~~l~~~~~~~~~v~l~~~~r~ 134 (243)
T cd06192 97 GGTVLLVAGGIGLAPLLPIAKKLAANGNKVTVLAGAKK 134 (243)
T ss_pred CCEEEEEeCcccHHHHHHHHHHHHHCCCeEEEEEecCc
Confidence 56899999999998877655544 356777666543
No 60
>PRK05802 hypothetical protein; Provisional
Probab=31.57 E-value=59 Score=33.75 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=24.6
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC---CCCeEEEEeC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLPV 91 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~---~~~lt~IVtv 91 (485)
.+.++|+++||+|++-++.-++++ ..+++.+...
T Consensus 171 ~~~~~llIaGGiGIaPl~~l~~~l~~~~~~v~li~g~ 207 (320)
T PRK05802 171 KNGKSLVIARGIGQAPGVPVIKKLYSNGNKIIVIIDK 207 (320)
T ss_pred CCCeEEEEEeEEeHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 346899999999999987766654 3456655544
No 61
>PRK08051 fre FMN reductase; Validated
Probab=31.53 E-value=38 Score=32.82 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=19.1
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
.+.++|+++||||++-++.=++..
T Consensus 101 ~~~~~vliagG~GiaP~~~~l~~~ 124 (232)
T PRK08051 101 SERPLLLIAGGTGFSYARSILLTA 124 (232)
T ss_pred CCCcEEEEecCcCcchHHHHHHHH
Confidence 346799999999999887766544
No 62
>PRK15005 universal stress protein F; Provisional
Probab=31.34 E-value=83 Score=27.38 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=31.8
Q ss_pred CCHHHHHHHh--cCCEEEEcCCCccccccccccchhHHHH-HhcCCCCEEEE
Q 011440 323 ANSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEI-ISSRSCPKVLL 371 (485)
Q Consensus 323 ~~p~al~AI~--~ADlII~gPGSlyTSI~P~Llv~GI~~A-I~~s~a~kV~I 371 (485)
+....++..+ ++|+||+|.. -.. +..+++..+.+. +++++||+..|
T Consensus 95 p~~~I~~~a~~~~~DLIV~Gs~--~~~-~~~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 95 PKDRILELAKKIPADMIIIASH--RPD-ITTYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred HHHHHHHHHHHcCCCEEEEeCC--CCC-chheeecchHHHHHHhCCCCEEEe
Confidence 3455666666 8999999854 234 456777777755 56778998765
No 63
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=30.95 E-value=96 Score=31.25 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC---CCCeEEEEe
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLP 90 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~---~~~lt~IVt 90 (485)
..++++++||+|++-++.-++++ ..+++.+..
T Consensus 98 ~~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~~g 132 (281)
T PRK06222 98 FGTVVCVGGGVGIAPVYPIAKALKEAGNKVITIIG 132 (281)
T ss_pred CCeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEEEe
Confidence 46899999999998876655443 445555543
No 64
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=30.83 E-value=70 Score=30.96 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=19.8
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
...++|+|+||||+.-++.-++.+
T Consensus 100 ~~~~~vlIagGtGiaP~~~~l~~~ 123 (241)
T cd06195 100 PGKRLWLLATGTGIAPFLSMLRDL 123 (241)
T ss_pred CCceEEEEeeccchhhHHHHHHHH
Confidence 356899999999999888777655
No 65
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=30.82 E-value=1.8e+02 Score=29.03 Aligned_cols=68 Identities=19% Similarity=0.158 Sum_probs=35.9
Q ss_pred CHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCCCC---CCcCC---CCCHHHHHHHHHHHhc
Q 011440 324 NSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNGLE---DRETS---GFSASCFVTAITDALN 397 (485)
Q Consensus 324 ~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nlt~---dgET~---g~sa~d~v~al~~~lg 397 (485)
-.++.+++++||++++==-|+-+ .|.-.++. .+..+..+|++.|... +...+ ...+.+.+..|++++|
T Consensus 169 ~~~~~~~~~~aDl~lviGTSl~V--~pa~~l~~----~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~~ 242 (244)
T PRK14138 169 LREAIRLSSKASLMIVMGSSLVV--YPAAELPL----ITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEGG 242 (244)
T ss_pred HHHHHHHHhcCCEEEEeCcCCee--ecHhHHHH----HHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHhC
Confidence 35677889999965542222222 22221111 1222345677889832 22111 3357888888877665
No 66
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=30.31 E-value=61 Score=34.78 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=38.8
Q ss_pred HHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCC
Q 011440 329 DQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG 374 (485)
Q Consensus 329 ~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nl 374 (485)
+.|++||+||-|=|.+-..-+--=.+-||.+.=++...|+|.||=-
T Consensus 279 ~~l~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~ 324 (375)
T TIGR00045 279 QKIKDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGS 324 (375)
T ss_pred HHhcCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEecc
Confidence 6789999999999999877777778889999777778888888754
No 67
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=30.20 E-value=58 Score=35.13 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=28.9
Q ss_pred CCCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 55 ~~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
.|.++.+|+++|||-+.-..+.-|.+.+.+++.+=
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie 163 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFE 163 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe
Confidence 45678899999999988889999998888766543
No 68
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=29.97 E-value=46 Score=32.23 Aligned_cols=33 Identities=9% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC---C--CCeEEEEeC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI---T--TRVAHVLPV 91 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~---~--~~lt~IVtv 91 (485)
..++|+++||||+.-++.-++++ . .+++.+...
T Consensus 109 ~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~~~ 146 (238)
T cd06211 109 QRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGA 146 (238)
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 47899999999998887766544 2 245555544
No 69
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=29.55 E-value=86 Score=30.79 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=25.9
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC---CCCeEEEEeCC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLPVS 92 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~---~~~lt~IVtv~ 92 (485)
...++++++||||+.-++.-++++ ..+++.+...-
T Consensus 101 ~~~~~vlIagG~GiaP~~s~l~~~~~~~~~v~l~~~~r 138 (250)
T PRK00054 101 IGGKVLLVGGGIGVAPLYELAKELKKKGVEVTTVLGAR 138 (250)
T ss_pred CCCeEEEEeccccHHHHHHHHHHHHHcCCcEEEEEEcC
Confidence 556899999999999988766654 35666665543
No 70
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=29.53 E-value=48 Score=34.78 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcCCCC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNITTR 84 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~~~~ 84 (485)
.+.+||++|||.+.-..++.|++...+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~ 28 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFT 28 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCC
Confidence 356899999999999999999987653
No 71
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=28.66 E-value=54 Score=34.42 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=25.2
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCC-CeEEEE
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITT-RVAHVL 89 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~-~lt~IV 89 (485)
+||+++|||-|.-.++..|++.+. +++++=
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~E 31 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFE 31 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 589999999999999999999863 666543
No 72
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=28.64 E-value=63 Score=34.52 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEeCCcchhHHHHHHH-cCCCCeEEEEeCCCC
Q 011440 55 PTHTQPSLLVFSGGTAFNGVVEELK-NITTRVAHVLPVSDD 94 (485)
Q Consensus 55 ~~~~~~~IVv~gGGTG~~~ll~gLk-~~~~~lt~IVtv~DD 94 (485)
...+.-+|+|.|||+|.-.++.-++ +++.+-.+||-..||
T Consensus 35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 3456679999999999999999887 557888889988887
No 73
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=28.43 E-value=2.1e+02 Score=29.36 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=53.2
Q ss_pred ccchhHHHHHh---cCCCCEEEEeCCCCCCcCCCCCHHHHHHHHHHHhcccCCCCCCCC-CCCcccccee-------eee
Q 011440 352 LVLLGIGEIIS---SRSCPKVLLLNGLEDRETSGFSASCFVTAITDALNRAYGDPQKSL-KNSPSQYINT-------ILV 420 (485)
Q Consensus 352 Llv~GI~~AI~---~s~a~kV~I~Nlt~dgET~g~sa~d~v~al~~~lg~~~~~~~~~~-~~~~~~~l~~-------~~~ 420 (485)
=.+||..++|+ +.+.|.+||+|-+.. +.....+.|....+.......+.+ .....+|+.. |++
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflTNn~~~------s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~vi 97 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLTNNSTR------SREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVI 97 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEeCCCCC------CHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEE
Confidence 34678888877 667889999998433 334455555443333221000000 0111222222 111
Q ss_pred cCCCCcccCHHHHHhCCCEEEEeccc-----eecCCCCCccCHHHHHHHHHHHHhh
Q 011440 421 PEDGEIPLDIQCLASQGIFDVITVHS-----ICDPKVGIIFDPKSLIQAIADLLGR 471 (485)
Q Consensus 421 d~~~~v~~D~~~L~~~Gi~~vi~~~~-----l~~~~~~~rhD~~~La~aL~~l~~~ 471 (485)
-++ -+.+.++..|.+.+-..+. +.-..+ ..+..++++.++..+...
T Consensus 98 G~~----~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d-~~~~~e~l~~a~~~i~~g 148 (269)
T COG0647 98 GEE----GLKEELEGAGFELVDEEEPARVDAVVVGLD-RTLTYEKLAEALLAIAAG 148 (269)
T ss_pred CCc----chHHHHHhCCcEEeccCCCCcccEEEEecC-CCCCHHHHHHHHHHHHcC
Confidence 111 2467778888763311111 111111 356777787777766654
No 74
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=28.39 E-value=48 Score=31.17 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=23.8
Q ss_pred ccccCCCC---CCCCeEEEEeCCcchhHHHHHHHcC
Q 011440 49 CRCFSNPT---HTQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 49 ~~~~~~~~---~~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
.-|+++.. ....++|+++||+|..-++.-|+.+
T Consensus 93 ~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l 128 (210)
T cd06186 93 EGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDL 128 (210)
T ss_pred ECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHH
Confidence 34555533 3456899999999999888766654
No 75
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=28.21 E-value=54 Score=35.24 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=26.9
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCCc
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGG 96 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDGG 96 (485)
+|||++|||.|.-..+..+.+.+.+++ ||.-.+-||
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~-lie~~~~GG 36 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNVT-LIDEADLGG 36 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEE-EEECCcccc
Confidence 489999999999999999999887744 444333343
No 76
>PRK05868 hypothetical protein; Validated
Probab=28.15 E-value=57 Score=34.07 Aligned_cols=30 Identities=17% Similarity=-0.010 Sum_probs=26.1
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
++|+++|||-+...++..|++.+.+++.|=
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEc
Confidence 479999999999999999999988866654
No 77
>PRK10637 cysG siroheme synthase; Provisional
Probab=28.11 E-value=55 Score=35.65 Aligned_cols=69 Identities=12% Similarity=0.018 Sum_probs=45.6
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCCc----chHHHHHHcCCCCCCcHHHHHHHhcCCCC
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGG----STAEIVRVLGGPAVGDIRSRCLRLSDEST 125 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDGG----SSG~LR~~~g~~~~GDiR~~l~aLa~~~~ 125 (485)
-++++|+++|||.-..+=++.|.+.+.++|+|-+-.++.= ..|+++..-.-.-.+||...-+.++..++
T Consensus 10 l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d 82 (457)
T PRK10637 10 LRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDD 82 (457)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCC
Confidence 4689999999999888878899999999999977665421 11222222233456777665555554433
No 78
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=28.04 E-value=58 Score=32.67 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=19.9
Q ss_pred CCCCCeEEEEeCCcchhHHHHHHHcC
Q 011440 56 THTQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 56 ~~~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
+....++|+|+||||++-++.=+++.
T Consensus 112 ~~~~~~~vlIAgGtGIaP~~s~l~~~ 137 (267)
T cd06182 112 KDPTTPIIMVGPGTGIAPFRGFLQER 137 (267)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHH
Confidence 34457899999999999887766543
No 79
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=27.67 E-value=74 Score=32.51 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=31.5
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCCcchHH
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAE 100 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDGGSSG~ 100 (485)
.+..+|||+|||.-....+-.|.+.+.+++.|=.-.--+|+||.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~ 45 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGR 45 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhc
Confidence 35679999999999999999999988866655433222245543
No 80
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=27.65 E-value=84 Score=32.97 Aligned_cols=24 Identities=17% Similarity=0.490 Sum_probs=19.3
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
...++|+|+||||+.-++.=++++
T Consensus 260 ~~~~~vlIagGtGIaP~~s~l~~~ 283 (399)
T PRK13289 260 SDTPVVLISGGVGITPMLSMLETL 283 (399)
T ss_pred CCCcEEEEecCccHHHHHHHHHHH
Confidence 356899999999999887766654
No 81
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=27.64 E-value=58 Score=30.96 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.2
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
...++++++||+|+.-++.=++++
T Consensus 96 ~~~~~v~iagG~Giap~~~~l~~~ 119 (222)
T cd06194 96 GEGPLLLVGAGTGLAPLWGIARAA 119 (222)
T ss_pred CCCCEEEEecCcchhhHHHHHHHH
Confidence 446899999999999888766643
No 82
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=27.31 E-value=84 Score=30.16 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=23.9
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCC-----CCeEEEEeCC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVS 92 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~-----~~lt~IVtv~ 92 (485)
..++++|+||||+.-++.=++++. .+++.+..+-
T Consensus 108 ~~~~vliagGtGiaP~~~~l~~~~~~~~~~~v~l~~~~r 146 (236)
T cd06210 108 LRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVN 146 (236)
T ss_pred CccEEEEccCcchhHHHHHHHHHHhcCCCceEEEEEecC
Confidence 467999999999998877666541 3455555443
No 83
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=27.27 E-value=53 Score=31.39 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=23.8
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC---C--CCeEEEEeCC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI---T--TRVAHVLPVS 92 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~---~--~~lt~IVtv~ 92 (485)
..++|+++||||+.-++.-++.+ . .+++.+..+-
T Consensus 98 ~~~ivliagG~GiaP~~~~l~~l~~~~~~~~v~l~~~~r 136 (224)
T cd06189 98 DRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGAR 136 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 56899999999999987655544 2 3455555443
No 84
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=27.04 E-value=90 Score=29.81 Aligned_cols=35 Identities=6% Similarity=0.209 Sum_probs=23.6
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC-----CCCeEEEEeCCC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI-----TTRVAHVLPVSD 93 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~-----~~~lt~IVtv~D 93 (485)
..++++++||+|.+-++.-++.+ ..+++.+..+-+
T Consensus 107 ~~~~vliagG~Giap~~~~~~~~~~~~~~~~i~l~~~~r~ 146 (235)
T cd06217 107 GDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSART 146 (235)
T ss_pred CceEEEEecCcCccHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 46899999999998776655543 134555554443
No 85
>PRK06475 salicylate hydroxylase; Provisional
Probab=26.88 E-value=65 Score=33.72 Aligned_cols=31 Identities=23% Similarity=0.039 Sum_probs=27.0
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEEe
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVt 90 (485)
.||+++|||-+...++..|++.+.+++.+=-
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 6899999999999999999999888766543
No 86
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=26.66 E-value=1.6e+02 Score=30.85 Aligned_cols=136 Identities=17% Similarity=0.194 Sum_probs=79.6
Q ss_pred CCCCCHHHHHHHhcCCEE-------EEcCCCccccccccccchhHHHHHhcC-------CCCEEEEeCC-CCCCcCCCCC
Q 011440 320 FPTANSAVLDQLNAVDCI-------IYAMGSLFTSICPSLVLLGIGEIISSR-------SCPKVLLLNG-LEDRETSGFS 384 (485)
Q Consensus 320 ~p~~~p~al~AI~~ADlI-------I~gPGSlyTSI~P~Llv~GI~~AI~~s-------~a~kV~I~Nl-t~dgET~g~s 384 (485)
.|....+++...+-||-. |=-||- |-++-+ -=.|.++||+++ +.|.|-|.=+ +-.|-.-++-
T Consensus 132 ~PeGyRKAlRlm~~AekF~lPiitfIDT~GA-ypG~~A--EErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~ 208 (317)
T COG0825 132 RPEGYRKALRLMKLAEKFGLPIITFIDTPGA-YPGIGA--EERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIG 208 (317)
T ss_pred CchHHHHHHHHHHHHHHhCCCEEEEecCCCC-CCCcch--hhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhh
Confidence 577788888888888832 223332 222221 124667899875 6677766655 5667788899
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCccccceeeeecCCCC------cccCHHHHHhCCCEEEEeccceecCCCCCccCH
Q 011440 385 ASCFVTAITDALNRAYGDPQKSLKNSPSQYINTILVPEDGE------IPLDIQCLASQGIFDVITVHSICDPKVGIIFDP 458 (485)
Q Consensus 385 a~d~v~al~~~lg~~~~~~~~~~~~~~~~~l~~~~~d~~~~------v~~D~~~L~~~Gi~~vi~~~~l~~~~~~~rhD~ 458 (485)
+.|.|..+.... +++. +|+..-.-++-|.... ..+-...|.++|+- ...+.++.++.++|+
T Consensus 209 vad~V~mle~s~-ySVi--------sPEG~AsILWkD~~ka~eAAe~mkita~dLk~lgiI----D~II~Ep~ggAhr~~ 275 (317)
T COG0825 209 VADRVLMLENST-YSVI--------SPEGCASILWKDASKAKEAAEAMKITAHDLKELGII----DGIIPEPLGGAHRDP 275 (317)
T ss_pred HHHHHHHHHhce-eeec--------ChhhhhhhhhcChhhhHHHHHHcCCCHHHHHhCCCc----ceeccCCCCccccCH
Confidence 999998875432 2221 2222222222232210 12335567788863 223445566788999
Q ss_pred HHHHHHHHHHHhh
Q 011440 459 KSLIQAIADLLGR 471 (485)
Q Consensus 459 ~~La~aL~~l~~~ 471 (485)
+..|.+|.+.+..
T Consensus 276 ~~~a~~l~~~l~~ 288 (317)
T COG0825 276 EAAAEALKNALLK 288 (317)
T ss_pred HHHHHHHHHHHHH
Confidence 9888887766643
No 87
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=26.47 E-value=66 Score=33.75 Aligned_cols=33 Identities=6% Similarity=-0.049 Sum_probs=28.2
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCCCCeEEEEeC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPV 91 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv 91 (485)
..+|+++|||-+...++..|++.+.+++.|=.-
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECC
Confidence 468999999999999999999998887666543
No 88
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=26.40 E-value=80 Score=35.82 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=30.3
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCC-CCCcchHH
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVS-DDGGSTAE 100 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~-DDGGSSG~ 100 (485)
.+|+|+|||.....++..|.+.+.+++.|=--. -..|+||.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~ 302 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGN 302 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcC
Confidence 489999999999999999998888766554322 12456663
No 89
>PRK09982 universal stress protein UspD; Provisional
Probab=26.32 E-value=64 Score=28.67 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=23.9
Q ss_pred hcCCEEEEcCCCccccccccccchhHHHHH-hcCCCCEEEEe
Q 011440 332 NAVDCIIYAMGSLFTSICPSLVLLGIGEII-SSRSCPKVLLL 372 (485)
Q Consensus 332 ~~ADlII~gPGSlyTSI~P~Llv~GI~~AI-~~s~a~kV~I~ 372 (485)
.+||+||+|-+ .+.+- -++ |+.+.+ +.++||+..|.
T Consensus 102 ~~aDLIVmG~~--~~~~~-~~~--~va~~V~~~s~~pVLvv~ 138 (142)
T PRK09982 102 EQCDLLVCGHH--HSFIN-RLM--PAYRGMINKMSADLLIVP 138 (142)
T ss_pred cCCCEEEEeCC--hhHHH-HHH--HHHHHHHhcCCCCEEEec
Confidence 48999999976 45443 333 477555 56788876653
No 90
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=26.17 E-value=56 Score=31.28 Aligned_cols=23 Identities=13% Similarity=0.442 Sum_probs=18.0
Q ss_pred CCCeEEEEeCCcchhHHHHHHHc
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKN 80 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~ 80 (485)
...+||+++||||+.-++.=+++
T Consensus 96 ~~~~illIagG~GiaP~~~~l~~ 118 (232)
T cd06190 96 EDRDIVCIAGGSGLAPMLSILRG 118 (232)
T ss_pred CCCcEEEEeeCcCHHHHHHHHHH
Confidence 34689999999999887765554
No 91
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=26.04 E-value=60 Score=31.21 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.4
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
...++++++||||.+-++.=++..
T Consensus 107 ~~~~~llia~GtGiap~~~~~~~~ 130 (241)
T cd06214 107 GARHYVLFAAGSGITPVLSILKTA 130 (241)
T ss_pred CCCcEEEEecccChhhHHHHHHHH
Confidence 357899999999998887766654
No 92
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=25.97 E-value=70 Score=31.45 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.1
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
...++|+|+||||++-++.=+++.
T Consensus 108 ~~~~~vlIAgGtGIaP~~s~l~~~ 131 (245)
T cd06200 108 DGRPLILIGNGTGLAGLRSHLRAR 131 (245)
T ss_pred CCCCEEEEecCcChHHHHHHHHHH
Confidence 456899999999999887766544
No 93
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=25.79 E-value=66 Score=31.38 Aligned_cols=28 Identities=7% Similarity=0.052 Sum_probs=24.0
Q ss_pred eEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 61 ~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
+||++|||.+.-..+..|++.+.+++.|
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~li 29 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLII 29 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 6999999999999999999888775544
No 94
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=25.35 E-value=98 Score=31.36 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=20.4
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcC
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
....++|+|+||||+.-++.=|++.
T Consensus 153 ~~~~~lvlIAgGtGIaP~~s~l~~~ 177 (289)
T cd06201 153 KGAAPVILIGAGTGIAPLAGFIRAN 177 (289)
T ss_pred CCCCCEEEEecCcCHHHHHHHHHhh
Confidence 3456899999999999998877654
No 95
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=25.32 E-value=71 Score=29.43 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=26.7
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
-.+.+|+|+|||.-...++..|.+.+.++|.+.
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~ 197 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVT 197 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEE
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEe
Confidence 467999999999999999999998887777765
No 96
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=25.30 E-value=80 Score=31.61 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=24.1
Q ss_pred CeEEEEeCCcchhH-----HHHHHHcCCCCeEEE
Q 011440 60 PSLLVFSGGTAFNG-----VVEELKNITTRVAHV 88 (485)
Q Consensus 60 ~~IVv~gGGTG~~~-----ll~gLk~~~~~lt~I 88 (485)
+||.+++||+|..- ++++|.+.+++++++
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv 34 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWL 34 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEE
Confidence 48999999999765 678888888888777
No 97
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=25.18 E-value=1.1e+02 Score=30.12 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcCC---CCeEEEEeCC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNIT---TRVAHVLPVS 92 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~~---~~lt~IVtv~ 92 (485)
...++++|+||||++-++.-++.+. .+++.+..+-
T Consensus 97 ~~~~~vlIagGtGIaP~~s~l~~~~~~~~~v~l~~~~r 134 (246)
T cd06218 97 DDGKVLLVGGGIGIAPLLFLAKQLAERGIKVTVLLGFR 134 (246)
T ss_pred CCCcEEEEecccCHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 4579999999999999887666552 4555555444
No 98
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=25.16 E-value=72 Score=31.83 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.1
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcCC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNIT 82 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~~ 82 (485)
...+|+++|||.|.. ++.|.++.
T Consensus 76 ~p~~VLiiGgG~G~~--~~ell~~~ 98 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGT--ARELLKHP 98 (246)
T ss_dssp ST-EEEEEESTTSHH--HHHHTTST
T ss_pred CcCceEEEcCCChhh--hhhhhhcC
Confidence 678999999999864 66776664
No 99
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=24.99 E-value=63 Score=33.08 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=19.5
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
...++|+|+||||+.-++.=|++.
T Consensus 155 ~~~~~vlIAgGtGIaP~~sml~~~ 178 (307)
T PLN03116 155 PNATHIMVATGTGIAPFRGFLRRM 178 (307)
T ss_pred CCCcEEEEecCccHHHHHHHHHHH
Confidence 346899999999999988766643
No 100
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=24.75 E-value=74 Score=31.10 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=24.9
Q ss_pred CCCeE-EEEeCCcchhHH----HHHHHcCCCCeEEEEeC
Q 011440 58 TQPSL-LVFSGGTAFNGV----VEELKNITTRVAHVLPV 91 (485)
Q Consensus 58 ~~~~I-Vv~gGGTG~~~l----l~gLk~~~~~lt~IVtv 91 (485)
.++|| +.++||.|..+. ++.|++.+.++.+|+|-
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 35665 559999998873 67777778888877743
No 101
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=24.71 E-value=50 Score=30.18 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=26.9
Q ss_pred CCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcC
Q 011440 323 ANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSR 364 (485)
Q Consensus 323 ~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s 364 (485)
..+++.+.|++||+|.++-|+.+- ++-.|--.|+.++|++.
T Consensus 25 ~~~~~~~~i~~ad~I~~~GG~~~~-l~~~l~~t~l~~~i~~~ 65 (154)
T PF03575_consen 25 NDADILEAIREADAIFLGGGDTFR-LLRQLKETGLDEAIREA 65 (154)
T ss_dssp GHHHHHHHHHHSSEEEE--S-HHH-HHHHHHHTTHHHHHHHH
T ss_pred ChHHHHHHHHhCCEEEECCCCHHH-HHHHHHhCCHHHHHHHH
Confidence 456899999999999999999864 23334445666666653
No 102
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=24.46 E-value=1.2e+02 Score=29.23 Aligned_cols=56 Identities=7% Similarity=0.140 Sum_probs=33.8
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCC-CCeEEEEeCCCC-CcchHHHHHHcCCCCCCcHH
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNIT-TRVAHVLPVSDD-GGSTAEIVRVLGGPAVGDIR 114 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~-~~lt~IVtv~DD-GGSSG~LR~~~g~~~~GDiR 114 (485)
.+||.++|.|.-...++++|.+.+ .++..|+...++ --..-.+.+.+|.....|+.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWK 61 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChH
Confidence 478999999999999999998664 344434333332 22233344445544334443
No 103
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=24.25 E-value=1e+02 Score=35.14 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 55 ~~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
+|..+++|+++|||-+.-..+.-|++.+.++|.+
T Consensus 189 ~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~ 222 (652)
T PRK12814 189 APKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIF 222 (652)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 4567889999999999999999999998887754
No 104
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=24.17 E-value=1.2e+02 Score=30.60 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=16.0
Q ss_pred CCeEEEEeCCcchhHHHHHHH
Q 011440 59 QPSLLVFSGGTAFNGVVEELK 79 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk 79 (485)
+..+++++||||+.-++.=++
T Consensus 108 ~~~~llIAgGtGIaP~~s~l~ 128 (289)
T PRK08345 108 GMDLLLIAGGLGMAPLRSVLL 128 (289)
T ss_pred CceEEEEecccchhHHHHHHH
Confidence 457999999999995555443
No 105
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=24.08 E-value=72 Score=38.56 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=28.6
Q ss_pred CCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 56 ~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
+..++||+++|||-+.-..+..|++.+.+++.+
T Consensus 536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~ 568 (1019)
T PRK09853 536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVF 568 (1019)
T ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 467889999999999999999999998877654
No 106
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=24.07 E-value=70 Score=30.32 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=25.4
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCC-----CCeEEEEeCCC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVSD 93 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~-----~~lt~IVtv~D 93 (485)
..++|+++||||+.-++.=++.+. .+++.+..+-+
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~ 134 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRD 134 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECC
Confidence 578999999999998887666542 35666655443
No 107
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=24.02 E-value=1e+02 Score=31.90 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.3
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcC
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
..-++|+.|+||||+.-+++=+++.
T Consensus 154 ~~~~~l~miAgGtGItPmlqii~~i 178 (286)
T KOG0534|consen 154 QKAKHLGMIAGGTGITPMLQLIRAI 178 (286)
T ss_pred CCcceEEEEecccchhhHHHHHHHH
Confidence 3378999999999999999877766
No 108
>PRK15456 universal stress protein UspG; Provisional
Probab=24.01 E-value=1.4e+02 Score=26.26 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=31.5
Q ss_pred CHHHHHHHh--cCCEEEEcCCCccccccccccchhHHHHHh-cCCCCEEEE
Q 011440 324 NSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIGEIIS-SRSCPKVLL 371 (485)
Q Consensus 324 ~p~al~AI~--~ADlII~gPGSlyTSI~P~Llv~GI~~AI~-~s~a~kV~I 371 (485)
..+.+++.+ ++|+||+|.-.. ++ -.+++.-+.+.+. .++||+..|
T Consensus 94 ~~~I~~~a~~~~~DLIVmG~~g~--~~-~~~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 94 RDEVNELAEELGADVVVIGSRNP--SI-STHLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred HHHHHHHHhhcCCCEEEEcCCCC--Cc-cceecCccHHHHHHcCCCCEEEe
Confidence 344555555 899999998763 44 5677788886664 678888665
No 109
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=23.79 E-value=78 Score=36.56 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=29.3
Q ss_pred CCCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 55 ~~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
.+.++++|+++|||.+.-..+..|.+.+.+++.+=
T Consensus 427 ~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e 461 (752)
T PRK12778 427 AEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFE 461 (752)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 35678899999999999999999999888766543
No 110
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=23.72 E-value=77 Score=31.92 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.0
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
..++++|+||||++-++.=+++.
T Consensus 135 ~~~~vlIagGtGIaP~~s~l~~~ 157 (286)
T cd06208 135 NATLIMIATGTGIAPFRSFLRRL 157 (286)
T ss_pred CCCEEEEecCccHHHHHHHHHHH
Confidence 45899999999999988776644
No 111
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=23.58 E-value=77 Score=38.33 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=28.2
Q ss_pred CCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 56 ~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
+..+.+|+|+|||-|.-..+.-|++.+.++|.+
T Consensus 534 ~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~ 566 (1012)
T TIGR03315 534 KSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVF 566 (1012)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 456789999999999999999999988876655
No 112
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=23.48 E-value=67 Score=30.81 Aligned_cols=33 Identities=12% Similarity=0.368 Sum_probs=23.1
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCC-----CCeEEEEeC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPV 91 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~-----~~lt~IVtv 91 (485)
..++++++||||++-++.=++++. .+++.+..+
T Consensus 103 ~~~~l~iagG~Giap~~~~l~~~~~~~~~~~v~l~~~~ 140 (232)
T cd06212 103 DRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGA 140 (232)
T ss_pred CCcEEEEecCcchhHHHHHHHHHHhcCCCCcEEEEEec
Confidence 468999999999998877666541 235555543
No 113
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=23.43 E-value=1.1e+02 Score=30.68 Aligned_cols=33 Identities=6% Similarity=0.272 Sum_probs=23.6
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC------CCCeEEEEeC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI------TTRVAHVLPV 91 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~------~~~lt~IVtv 91 (485)
..++|+|+||||+.-++.=|+++ ..+++.+..+
T Consensus 150 ~~~~vlIAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~ 188 (283)
T cd06188 150 DREMVFIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGA 188 (283)
T ss_pred CCcEEEEEecccHhHHHHHHHHHHhcCCCCceEEEEEec
Confidence 46899999999999888766653 1355555543
No 114
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=23.11 E-value=1.1e+02 Score=27.80 Aligned_cols=48 Identities=19% Similarity=0.120 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEE-eCCC
Q 011440 325 SAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLL-LNGL 375 (485)
Q Consensus 325 p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I-~Nlt 375 (485)
..+.+++..+|.||..-|..... ...+.-+.+|+++++++++++ +..+
T Consensus 52 ~~~~~al~~~d~vi~~~~~~~~~---~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 52 DSVKAALKGADAVIHAAGPPPKD---VDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHTTSSEEEECCHSTTTH---HHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhhhhhhhcchhhhhhhhhccc---ccccccccccccccccccceeeeccc
Confidence 56778899999999998876664 566777888888888877544 5454
No 115
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=22.99 E-value=42 Score=33.85 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCeEEEEeCCcchhHH----HHHHHcCCCCeEEEEeCC
Q 011440 59 QPSLLVFSGGTAFNGV----VEELKNITTRVAHVLPVS 92 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~l----l~gLk~~~~~lt~IVtv~ 92 (485)
.-|||+||||||.+-. ..+|+....+-..|++.+
T Consensus 124 ~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 124 KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 4699999999998754 335554444444444444
No 116
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=22.89 E-value=75 Score=33.05 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=27.5
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEEe
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVt 90 (485)
.+|+++|||-+...++.+|.+.+.+++.|=.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 4799999999999999999999888877763
No 117
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=22.88 E-value=1.3e+02 Score=29.09 Aligned_cols=34 Identities=15% Similarity=0.265 Sum_probs=25.0
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCC--CCeEEEEeCC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNIT--TRVAHVLPVS 92 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~--~~lt~IVtv~ 92 (485)
...+|+++||||..-++.-++.+. .+++.+..+-
T Consensus 88 ~~~~vliAgGtGitP~~sil~~~~~~~~i~l~~~~r 123 (233)
T cd06220 88 GGKVLLIGGGIGIAPLAPLAERLKKAADVTVLLGAR 123 (233)
T ss_pred CCeEEEEecCcChHHHHHHHHHHHhcCCEEEEEecC
Confidence 578999999999998887666553 4566655543
No 118
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=22.85 E-value=67 Score=31.05 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=18.1
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
..++++|+||+|+.-++.=++++
T Consensus 125 ~~~illIagG~GItP~~sil~~l 147 (220)
T cd06197 125 ERKMVWIAGGVGITPFLAMLRAI 147 (220)
T ss_pred CceEEEEecccchhhHHHHHHHH
Confidence 46899999999998877655543
No 119
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=22.77 E-value=1.1e+02 Score=35.29 Aligned_cols=33 Identities=18% Similarity=0.036 Sum_probs=28.3
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
....+|+++|||-|.-.++.+|++.+.+++.+=
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~E 111 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFE 111 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEe
Confidence 345799999999999999999999987766654
No 120
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=22.69 E-value=77 Score=31.57 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=25.5
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcCC------CCeEEEEeCCCC
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNIT------TRVAHVLPVSDD 94 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~~------~~lt~IVtv~DD 94 (485)
..+.++++|+||||+.-+..=++++. .+++.+...-+.
T Consensus 97 ~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~ 140 (261)
T TIGR02911 97 YKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTP 140 (261)
T ss_pred cCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCH
Confidence 34578999999999998866555431 245555555443
No 121
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=22.65 E-value=83 Score=32.78 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=23.8
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEEe
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVt 90 (485)
++|+|+|||.-...++..|.+.+.+++++=-
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~ 31 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDR 31 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5899999997777778888888777655544
No 122
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=22.58 E-value=72 Score=32.80 Aligned_cols=24 Identities=13% Similarity=0.455 Sum_probs=19.0
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
...++|+++||||+.-++.=|+++
T Consensus 203 ~~~~ivlIagGtGiaP~~s~l~~~ 226 (339)
T PRK07609 203 SDKPIVLLASGTGFAPIKSIVEHL 226 (339)
T ss_pred CCCCEEEEecCcChhHHHHHHHHH
Confidence 446899999999999887655544
No 123
>PRK09126 hypothetical protein; Provisional
Probab=22.54 E-value=85 Score=32.40 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
..+|+++|||-+...++..|++.+.+++.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~ 32 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLI 32 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 357999999999999999999988776655
No 124
>PRK10342 glycerate kinase I; Provisional
Probab=22.54 E-value=1.2e+02 Score=32.76 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=39.1
Q ss_pred HHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCCCEEEEeCC
Q 011440 329 DQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSCPKVLLLNG 374 (485)
Q Consensus 329 ~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a~kV~I~Nl 374 (485)
+.|++||+||-|=|++-..-+--=.+-||.+.=++...|+|.||=-
T Consensus 280 ~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~ 325 (381)
T PRK10342 280 EHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS 325 (381)
T ss_pred HHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecc
Confidence 6788999999999999887777778889998877778899988754
No 125
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=22.47 E-value=69 Score=30.52 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.1
Q ss_pred CCeEEEEeCCcchhHHHHHHHc
Q 011440 59 QPSLLVFSGGTAFNGVVEELKN 80 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~ 80 (485)
..++|+++||||.+-++.=++.
T Consensus 103 ~~~~vlIagG~Giap~~~~l~~ 124 (231)
T cd06215 103 ADKLLLLSAGSGITPMMSMARW 124 (231)
T ss_pred CCcEEEEecCcCcchHHHHHHH
Confidence 5689999999999966555543
No 126
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=22.46 E-value=73 Score=30.89 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=18.4
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
...++++|+||||++-++.=++++
T Consensus 112 ~~~~llliagGtGiaP~~~~l~~~ 135 (247)
T cd06184 112 SDRPLVLISAGVGITPMLSMLEAL 135 (247)
T ss_pred CCCcEEEEeccccHhHHHHHHHHH
Confidence 446899999999999776655543
No 127
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=22.33 E-value=1.3e+02 Score=28.32 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=24.8
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC---CCCeEEEEeCCC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLPVSD 93 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~---~~~lt~IVtv~D 93 (485)
..++++++||||++-++.=+++. ..+++.+...-+
T Consensus 98 ~~~~v~ia~GtGiap~~~il~~~~~~~~~v~l~~~~r~ 135 (211)
T cd06185 98 ARRHLLIAGGIGITPILSMARALAARGADFELHYAGRS 135 (211)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 46899999999999887755544 345666655443
No 128
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=22.20 E-value=1.8e+02 Score=29.95 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=29.8
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEEEeCCCCC
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDG 95 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv~DDG 95 (485)
+|||+||-+.=....++.|.+...++.+|||..|.-
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~ 36 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLESGHEVVAVVTQPDRP 36 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence 689999877766788888887678999999988763
No 129
>PRK10116 universal stress protein UspC; Provisional
Probab=22.20 E-value=1.3e+02 Score=26.07 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=30.1
Q ss_pred CCHHHHHHHh--cCCEEEEcCCCccccccccccchhHH-HHHhcCCCCEEEEe
Q 011440 323 ANSAVLDQLN--AVDCIIYAMGSLFTSICPSLVLLGIG-EIISSRSCPKVLLL 372 (485)
Q Consensus 323 ~~p~al~AI~--~ADlII~gPGSlyTSI~P~Llv~GI~-~AI~~s~a~kV~I~ 372 (485)
+....++.++ ++|+||+|--.. + -+..+. .+. ..|++++||+..|.
T Consensus 90 ~~~~I~~~a~~~~~DLiV~g~~~~-~-~~~~~~--s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 90 LSEHILEVCRKHHFDLVICGNHNH-S-FFSRAS--CSAKRVIASSEVDVLLVP 138 (142)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcc-h-HHHHHH--HHHHHHHhcCCCCEEEEe
Confidence 3467777777 999999976654 2 233333 244 55678889886663
No 130
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=22.19 E-value=41 Score=28.77 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHhcCCCC
Q 011440 108 PAVGDIRSRCLRLSDEST 125 (485)
Q Consensus 108 ~~~GDiR~~l~aLa~~~~ 125 (485)
.++||+|+.+.+++....
T Consensus 30 ~G~gD~Rhvl~Tl~~~~~ 47 (100)
T PF14737_consen 30 LGCGDLRHVLKTLASLPR 47 (100)
T ss_pred ecCccHHHHHHHHHhccc
Confidence 579999999999988643
No 131
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.03 E-value=2.5e+02 Score=21.81 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=37.7
Q ss_pred CeEEEEeCCcc--hhHHHHHHHcCC--CCeEEEEeCCCCCcchHHHHHHc
Q 011440 60 PSLLVFSGGTA--FNGVVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVL 105 (485)
Q Consensus 60 ~~IVv~gGGTG--~~~ll~gLk~~~--~~lt~IVtv~DDGGSSG~LR~~~ 105 (485)
+++++|+|=++ +..++..+|+.+ ..+.|++|..-=.|+...|-+++
T Consensus 1 e~~ll~~g~~~~el~~~l~~~r~~~~~~~~kAvlT~tN~~Wt~~~L~~El 50 (58)
T PF12646_consen 1 EEFLLFSGFSGEELDKFLDALRKAGIPIPLKAVLTPTNINWTLKDLLEEL 50 (58)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHcCCCcceEEEECCCcccCcHHHHHHHH
Confidence 46789998666 788999999774 67999999999999888876654
No 132
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.96 E-value=1.3e+02 Score=27.24 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=36.3
Q ss_pred CCHHHHHHHhcCCEEEEcCCCccccccccccchhHHHHHhcCCC--CEEEE
Q 011440 323 ANSAVLDQLNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSRSC--PKVLL 371 (485)
Q Consensus 323 ~~p~al~AI~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s~a--~kV~I 371 (485)
+.++++++..+.|.=+++.+|+.|+-++. ++.+.+++++... .+|++
T Consensus 41 s~e~~v~aa~e~~adii~iSsl~~~~~~~--~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 41 TPEEIARQAVEADVHVVGVSSLAGGHLTL--VPALRKELDKLGRPDILVVV 89 (132)
T ss_pred CHHHHHHHHHHcCCCEEEEcCchhhhHHH--HHHHHHHHHhcCCCCCEEEE
Confidence 44677888887777777778999988887 7999999998653 45665
No 133
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=21.87 E-value=1e+02 Score=30.73 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.0
Q ss_pred CCeEEEEeCCcchhHHHHHHHcC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
+.+|++++||||.+-+..=++++
T Consensus 107 ~~~vlliagGtG~aPl~~i~~~~ 129 (252)
T COG0543 107 GKPVLLIAGGTGIAPLYAIAKEL 129 (252)
T ss_pred CCcEEEEecccCHhHHHHHHHHH
Confidence 33499999999998877766655
No 134
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=21.83 E-value=1.1e+02 Score=34.00 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=26.7
Q ss_pred CCCCCeEEEEeCCcchhHHHHHHHcCCCCeEE
Q 011440 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAH 87 (485)
Q Consensus 56 ~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~ 87 (485)
+..+.+|+++|||.+.-..+..|++.+.++++
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v 165 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTI 165 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 56789999999999888888889988876444
No 135
>PRK06696 uridine kinase; Validated
Probab=21.83 E-value=1.9e+02 Score=27.93 Aligned_cols=51 Identities=22% Similarity=0.109 Sum_probs=34.8
Q ss_pred CCCCeEEEEeCCcchh--HHHHHHHcCC--CCeEEEEeCCCCCcchHHHHHHcCC
Q 011440 57 HTQPSLLVFSGGTAFN--GVVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVLGG 107 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~--~ll~gLk~~~--~~lt~IVtv~DDGGSSG~LR~~~g~ 107 (485)
..+|.||.++|++|+- ++++.|.+.- ...++++-..||.=-+-..|..+|.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~ 73 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGR 73 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCC
Confidence 3468899999988774 4555665442 2467777778888666666766664
No 136
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=21.78 E-value=1.3e+02 Score=32.95 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=27.1
Q ss_pred CCCCCCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 55 ~~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
.+.+.++|++||||.+.-..++.|++.+.+++.+
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vf 39 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGHTVVVF 39 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEE
Confidence 4566789999999999888888898887664433
No 137
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=21.67 E-value=1.2e+02 Score=36.53 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=0.0
Q ss_pred ccCCCCCCC--CeEEEEeCCcchhHH---HHHHHcCCCCeEEEEeCCC
Q 011440 51 CFSNPTHTQ--PSLLVFSGGTAFNGV---VEELKNITTRVAHVLPVSD 93 (485)
Q Consensus 51 ~~~~~~~~~--~~IVv~gGGTG~~~l---l~gLk~~~~~lt~IVtv~D 93 (485)
||+++.... .++|+++||+|+.-+ ++.|++.+.+++.|...-+
T Consensus 89 PlG~~~~~~~~~~vllVaGGiGIAPl~s~~r~l~~~g~~v~li~g~R~ 136 (1006)
T PRK12775 89 PLGLPQHIDKAGHVVLVGGGLGVAPVYPQLRAFKEAGARTTGIIGFRN 136 (1006)
T ss_pred CCCCCCCCCCCCeEEEEEEhHHHHHHHHHHHHHHhCCCcEEEEEeCCC
No 138
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=21.64 E-value=83 Score=33.85 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=17.9
Q ss_pred CCeEEEEeCCcchhHHHHHHHc
Q 011440 59 QPSLLVFSGGTAFNGVVEELKN 80 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~ 80 (485)
..++|+|+||||++-+..=+++
T Consensus 267 ~~~lllIagGtGIAP~~s~l~~ 288 (411)
T TIGR03224 267 ESSIMMICTGTGSAPMRAMTER 288 (411)
T ss_pred CCCEEEEecccCcHHHHHHHHH
Confidence 4689999999999988765553
No 139
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=21.51 E-value=76 Score=32.65 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=23.9
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC-----CCCeEEEEeCC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI-----TTRVAHVLPVS 92 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~-----~~~lt~IVtv~ 92 (485)
...++|+|+||+|+.-++.=++.+ ..+++.+..+-
T Consensus 110 ~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y~~r 149 (332)
T PRK10684 110 AEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIFNVR 149 (332)
T ss_pred CCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 346899999999998887765543 23555555443
No 140
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=21.44 E-value=46 Score=30.70 Aligned_cols=44 Identities=18% Similarity=-0.010 Sum_probs=36.6
Q ss_pred HhcCCEEEEcCCCccccccccccchhHHHHHhcC---CCCEEEEeCC
Q 011440 331 LNAVDCIIYAMGSLFTSICPSLVLLGIGEIISSR---SCPKVLLLNG 374 (485)
Q Consensus 331 I~~ADlII~gPGSlyTSI~P~Llv~GI~~AI~~s---~a~kV~I~Nl 374 (485)
+.++|+|++|=|-+-..-.--+--.++.++|++. ..|++.+|..
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG 51 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG 51 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH
Confidence 5689999999999888888777778999999864 5789999984
No 141
>PLN02366 spermidine synthase
Probab=21.37 E-value=98 Score=32.15 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=17.3
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcC
Q 011440 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 58 ~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
...+|+++|||.|. +++.+.++
T Consensus 91 ~pkrVLiIGgG~G~--~~rellk~ 112 (308)
T PLN02366 91 NPKKVLVVGGGDGG--VLREIARH 112 (308)
T ss_pred CCCeEEEEcCCccH--HHHHHHhC
Confidence 36789999999987 56677666
No 142
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=21.31 E-value=99 Score=31.99 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=29.9
Q ss_pred CCCCeEEEEeC--CcchhHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCc
Q 011440 57 HTQPSLLVFSG--GTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGD 112 (485)
Q Consensus 57 ~~~~~IVv~gG--GTG~~~ll~gLk~~~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GD 112 (485)
.+.|.|++||| |+|.++++..+.+- -+++.++ ||--||+++--..++|
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~r-LgI~~vi-------sTD~IREvlR~ii~~~ 135 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARR-LGIRSVI-------STDSIREVLRKIISPE 135 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHH-cCCceee-------cchHHHHHHHHhCCHH
Confidence 44689999999 66777777777643 4455444 3344677664333333
No 143
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=21.28 E-value=72 Score=32.75 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.2
Q ss_pred eEEEEeCCcchhHHHHHHHcC
Q 011440 61 SLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 61 ~IVv~gGGTG~~~ll~gLk~~ 81 (485)
+||++|||.|....++.|++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~ 21 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMK 21 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCc
Confidence 699999999999999988643
No 144
>PRK05920 aromatic acid decarboxylase; Validated
Probab=21.25 E-value=1e+02 Score=30.20 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=23.0
Q ss_pred CCCeE-EEEeCCcchhHHH---HHHHcCCCCeEEEEe
Q 011440 58 TQPSL-LVFSGGTAFNGVV---EELKNITTRVAHVLP 90 (485)
Q Consensus 58 ~~~~I-Vv~gGGTG~~~ll---~gLk~~~~~lt~IVt 90 (485)
+++|| +.++||.|..+.. +.|++.+.++.+|+|
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~g~~V~vi~T 38 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAADYEVHLVIS 38 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 35665 6699999988754 555555777777774
No 145
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=21.17 E-value=85 Score=32.72 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=24.9
Q ss_pred CeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
..|+++|||-+...++..|.+.+.+++.|
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~vi 31 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLL 31 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEE
Confidence 46999999999999999999987776554
No 146
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=20.90 E-value=86 Score=31.26 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=19.5
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcC
Q 011440 57 HTQPSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 57 ~~~~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
..+.++|+++||||+.-++.=|+++
T Consensus 99 ~~~~~~llIAgGtGItP~~sil~~~ 123 (263)
T PRK08221 99 YKGKELIVVAGGTGVAPVKGLMRYF 123 (263)
T ss_pred cCCccEEEEcccccHHHHHHHHHHH
Confidence 3456899999999999877766644
No 147
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=20.87 E-value=87 Score=32.68 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=18.5
Q ss_pred CCeEEEEeCCcchhHHHHHHHc
Q 011440 59 QPSLLVFSGGTAFNGVVEELKN 80 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~ 80 (485)
..++|+|+||||+.-++.=+++
T Consensus 159 ~~~lvlIAGGsGITP~lsmlr~ 180 (325)
T PTZ00274 159 WKHVGMIAGGTGFTPMLQIIRH 180 (325)
T ss_pred CceEEEEeCCcchhHHHHHHHH
Confidence 3689999999999998886664
No 148
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=20.86 E-value=89 Score=30.25 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=24.7
Q ss_pred eEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 61 SLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 61 ~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
.|+++|||-+...++..|++.+.+++.|=
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie 30 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLE 30 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 58999999999999999999887765553
No 149
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=20.65 E-value=97 Score=32.41 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=28.7
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCCCCeEEEEeC
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPV 91 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~~~lt~IVtv 91 (485)
...|+++|||-+.-.+..+|++.+.+++.|=..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 467999999999999999999999888777544
No 150
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=20.61 E-value=88 Score=32.46 Aligned_cols=29 Identities=3% Similarity=-0.067 Sum_probs=25.3
Q ss_pred eEEEEeCCcchhHHHHHHHcCCCCeEEEE
Q 011440 61 SLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (485)
Q Consensus 61 ~IVv~gGGTG~~~ll~gLk~~~~~lt~IV 89 (485)
+|+++|||-+...++.+|.+.+.+++.+=
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E 31 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFE 31 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEec
Confidence 68999999999999999999887766553
No 151
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=20.53 E-value=1.3e+02 Score=29.88 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=27.6
Q ss_pred CCCCCCeEEEEeCCc---chhHHHHHHHcCCCCeEEEEeCCCCCcchHHHHHHcCCCCCCcH
Q 011440 55 PTHTQPSLLVFSGGT---AFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDI 113 (485)
Q Consensus 55 ~~~~~~~IVv~gGGT---G~~~ll~gLk~~~~~lt~IVtv~DDGGSSG~LR~~~g~~~~GDi 113 (485)
.+.....++++++++ -+..+...+.+.+ ++++.+ ++|+||.|.+.+.-=.++||
T Consensus 22 ~~~~~~~l~v~~a~~~~~~~~~l~~~Fe~~~-g~~v~~----~~~~Sg~l~~qi~~g~~~Dv 78 (257)
T PRK10677 22 ALADEGKITVFAAASLTNALQDIAAQYKKEK-GVDVVS----SFASSSTLARQIEQGAPADL 78 (257)
T ss_pred ccccCCcEEEEEecChHHHHHHHHHHHHhhh-CCeEEE----EecccHHHHHHHHcCCCCCE
Confidence 334444677777653 3334444444332 555554 45566777766632234664
No 152
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=20.53 E-value=97 Score=29.93 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHhcCCEEEEcCCCcccccc----------ccccch----hHHHHHhcCCCCEEEEeCCCCC
Q 011440 321 PTANSAVLDQLNAVDCIIYAMGSLFTSIC----------PSLVLL----GIGEIISSRSCPKVLLLNGLED 377 (485)
Q Consensus 321 p~~~p~al~AI~~ADlII~gPGSlyTSI~----------P~Llv~----GI~~AI~~s~a~kV~I~Nlt~d 377 (485)
.....++.+..++||.+|+.-|..++.-. ..+-++ .+-+++++...|.|.|.|.+.+
T Consensus 73 ~~~~~~~~~~~~~aD~vIv~~~~~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~~~~Ivvv~~~~P 143 (227)
T PF01915_consen 73 DEGIDEAVAAAKEADVVIVFVGRPSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAGKKVIVVVNSGNP 143 (227)
T ss_dssp CSCHHHHHHHHHCSSEEEEEEETTSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHHSCEEEEEE-SSG
T ss_pred ccchHHHHHHhhcCCEEEEeccccccccccccccccCCcccccchhhHHHHHHHHHHhcCCeEEEEecCCc
Confidence 45668889999999999998885554432 334444 3445556665666777776544
No 153
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=20.46 E-value=1e+02 Score=34.96 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=27.6
Q ss_pred CCCCCeEEEEeCCcchhHHHHHHHcCCCCeEE
Q 011440 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAH 87 (485)
Q Consensus 56 ~~~~~~IVv~gGGTG~~~ll~gLk~~~~~lt~ 87 (485)
+.++++|+++|||-+.-..+..|++.+.++++
T Consensus 324 ~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V 355 (654)
T PRK12769 324 TKSDKRVAIIGAGPAGLACADVLARNGVAVTV 355 (654)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 45788999999999999999999998887544
No 154
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=20.40 E-value=1e+02 Score=32.13 Aligned_cols=30 Identities=10% Similarity=-0.009 Sum_probs=26.0
Q ss_pred CCeEEEEeCCcchhHHHHHHHcCCCCeEEE
Q 011440 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (485)
Q Consensus 59 ~~~IVv~gGGTG~~~ll~gLk~~~~~lt~I 88 (485)
..+|+++|||-+...+...|++.+.+++.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~ 31 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVL 31 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEE
Confidence 467999999999999999999998876554
No 155
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=20.21 E-value=1.3e+02 Score=29.71 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=23.7
Q ss_pred CeEEEEeCCcchhHHHHHHHcCC-----CCeEEEEeCC
Q 011440 60 PSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVS 92 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~~-----~~lt~IVtv~ 92 (485)
.++++++||||+.-++.=+++.. .+++.+...-
T Consensus 107 ~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l~~g~r 144 (248)
T PRK10926 107 ETLWMLATGTAIGPYLSILQEGKDLERFKNLVLVHAAR 144 (248)
T ss_pred CeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEEEEeCC
Confidence 68999999999998877666442 3566665543
No 156
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=20.18 E-value=68 Score=30.38 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=18.1
Q ss_pred CeEEEEeCCcchhHHHHHHHcC
Q 011440 60 PSLLVFSGGTAFNGVVEELKNI 81 (485)
Q Consensus 60 ~~IVv~gGGTG~~~ll~gLk~~ 81 (485)
.++|+++||||+.-++.-++..
T Consensus 100 ~~~vlia~GtGiaP~~s~l~~~ 121 (218)
T cd06196 100 GPGVFIAGGAGITPFIAILRDL 121 (218)
T ss_pred CceEEEecCCCcChHHHHHHHH
Confidence 5799999999999887766654
Done!