BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011442
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 183/467 (39%), Positives = 265/467 (56%), Gaps = 41/467 (8%)
Query: 15 FISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVERQIVHQ 72
F+S DG+ N R RVLGG S INAG Y RA++ G WD LVN+++ WVE IV++
Sbjct: 89 FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYK 148
Query: 73 PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQK 132
P + WQ + + L+ GV P +GF+ DH GT+I G+ FD G RH A ELL N
Sbjct: 149 PNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNN 208
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ V + A+V+KI+F ++ A GVI++D NG HQAF+ K EVI+S G IGTPQ+
Sbjct: 209 LRVGVHASVEKIIF-SNAPGLTATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQL 265
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLG 252
L LSGVGP++ L LNI VVL + ++G+ + DNP N + + P+E +++ +GI
Sbjct: 266 LLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGI---- 321
Query: 253 VYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG 312
S D C + T PP P + LP+ F
Sbjct: 322 -----------SNDFYQCSFSSLPF------TTPPFGFFPSS-------SYPLPNSTF-- 355
Query: 313 GFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHF 371
K+A P+S G L+L ++NV +P+V FNY+S+ DL CV G++ +++ +
Sbjct: 356 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 415
Query: 372 LNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVV 431
Y D VE + +PK D + E FC+++V + WHYHGGC VGKV+
Sbjct: 416 KPYKVEDLPGVEGFNILGIP-----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVL 470
Query: 432 STEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478
+++V GI+ LRVVDGST+ +P ++PQG LM+GRY+G+KIL++R
Sbjct: 471 DGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 517
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 183/467 (39%), Positives = 265/467 (56%), Gaps = 41/467 (8%)
Query: 15 FISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVERQIVHQ 72
F+S DG+ N R RVLGG S INAG Y RA++ G WD LVN+++ WVE IV++
Sbjct: 89 FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYK 148
Query: 73 PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQK 132
P + WQ + + L+ GV P +GF+ DH GT+I G+ FD G RH A ELL N
Sbjct: 149 PNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNN 208
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ V + A+V+KI+F ++ A GVI++D NG HQAF+ K EVI+S G IGTPQ+
Sbjct: 209 LRVGVHASVEKIIF-SNAPGLTATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQL 265
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLG 252
L LSGVGP++ L LNI VVL + ++G+ + DNP N + + P+E +++ +GI
Sbjct: 266 LLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGI---- 321
Query: 253 VYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG 312
S D C + T PP P + LP+ F
Sbjct: 322 -----------SNDFYQCSFSSLPF------TTPPFGFFPSS-------SYPLPNSTF-- 355
Query: 313 GFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHF 371
K+A P+S G L+L ++NV +P+V FNY+S+ DL CV G++ +++ +
Sbjct: 356 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 415
Query: 372 LNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVV 431
Y D VE + +PK D + E FC+++V + WHYHGGC VGKV+
Sbjct: 416 KPYKVEDLPGVEGFNILGIP-----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVL 470
Query: 432 STEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478
+++V GI+ LRVVDGST+ +P ++PQG LM+GRY+G+KIL++R
Sbjct: 471 DGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 517
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 177/473 (37%), Positives = 270/473 (57%), Gaps = 40/473 (8%)
Query: 9 QSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVE 66
Q+ + F+S DG+ + R RVLGG S INAG Y RA+++ G WD LVN+++ WVE
Sbjct: 83 QTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANTKIFSASGIEWDMDLVNQTYDWVE 142
Query: 67 RQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLA 126
IV++P ++ WQ + + L+ GV P NGF+ DH GT++ G+ FD G RH + ELL
Sbjct: 143 DTIVYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEAGTRLTGSTFDNNGTRHASDELLN 202
Query: 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186
+P + V + A+V+KI+F ++ A+GVI+KD NG HQAF+ G + EVI+S G
Sbjct: 203 KGDPNNLRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRG--EGEVIVSAGP 260
Query: 187 IGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETV 246
IG+PQ+L LSGVGP++ L LNI VVL + ++G+ + DNP N + + P+E S + +
Sbjct: 261 IGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPSTVTVL 320
Query: 247 GITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLP 306
GIT + C + +IPP P LP
Sbjct: 321 GITS---------------NFYQCSFSSLPF------SIPPFAFFPNP-------TYPLP 352
Query: 307 HEAFKGGFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKI 365
+ F + K+ P+S G ++L +++V P+V FNY+S+ DL CV G++ ++
Sbjct: 353 NSTF--AHFVNKVPGPLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGEL 410
Query: 366 VQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGC 425
+ S Y D ++ + +P++ D + E FC++ V + WHYHGGC
Sbjct: 411 LSSDALKPYKVEDLPGIDGFDILGIP-----LPENQTDDAAFETFCREAVASYWHYHGGC 465
Query: 426 HVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478
VG+V+ +++V GI+ LRVVDGST+ SP ++PQG LM+GRY+G KIL++R
Sbjct: 466 LVGEVLDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYVGSKILQER 518
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 122/518 (23%), Positives = 211/518 (40%), Gaps = 105/518 (20%)
Query: 8 PQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKL------VNES 61
PQ F+ +ARA+V+GG SS NA A + ++ W+AK +
Sbjct: 77 PQENGNSFMR-----HARAKVMGGCSSHNACIAFWAPREDLDE--WEAKYGATGWNAEAA 129
Query: 62 FPWVER--------------------QIVHQPKQEGWQKALRDSLLDVGV--SPFNGFTY 99
+P +R +++ P ++ AL D+ G+ + FN T
Sbjct: 130 WPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGT- 188
Query: 100 DHIYGTKIGGTIFDRFGRRHTAAELLASAN-------PQKITVLIRATVQKIVFDTSGKR 152
T + G F + RR +S + + T+L +++VFD + +R
Sbjct: 189 -----TVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRR 242
Query: 153 PKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVV 212
V ++ G+ H+ ++EV+LS GAI TP++L LSG+GP A L + I V+
Sbjct: 243 CTGVDIV-DSAFGHTHRL----TARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVL 297
Query: 213 LDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHH 272
+D+ +G+ + D+P V + +P+ + E+ ++G++ G R + H+
Sbjct: 298 VDSPGVGEHLQDHPEGVVQFEAKQPM---VAESTQWWEIGIFTPTEDGL--DRPDLMMHY 352
Query: 273 GIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFIL-EKIASPISTGELSLI 331
G + ++ L P + GF L + S G + L
Sbjct: 353 GSVPFDMNTLRHGYPTT---------------------ENGFSLTPNVTHARSRGTVRLR 391
Query: 332 NTNVDDNPSVSFNYFSHPL--DLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNAS 389
+ + D P V YF+ P D++ V G+R A +I +T + L+
Sbjct: 392 SRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRE-------LSPG 444
Query: 390 VRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKV------VSTEYKVLGIDRL 443
V A + + L+ + + T T++H G +G V + E +V G+ L
Sbjct: 445 VEAQTD---------EELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGL 495
Query: 444 RVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481
RV D S E NP TV+M+G I R G+
Sbjct: 496 RVADASVMPEHVTVNPNITVMMIGERCADLIRSARAGE 533
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 121/518 (23%), Positives = 211/518 (40%), Gaps = 105/518 (20%)
Query: 8 PQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKL------VNES 61
PQ F+ +ARA+V+GG SS N+ A + ++ W+AK +
Sbjct: 77 PQENGNSFMR-----HARAKVMGGCSSHNSCIAFWAPREDLDE--WEAKYGATGWNAEAA 129
Query: 62 FPWVER--------------------QIVHQPKQEGWQKALRDSLLDVGV--SPFNGFTY 99
+P +R +++ P ++ AL D+ G+ + FN T
Sbjct: 130 WPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGT- 188
Query: 100 DHIYGTKIGGTIFDRFGRRHTAAELLASAN-------PQKITVLIRATVQKIVFDTSGKR 152
T + G F + RR +S + + T+L +++VFD + +R
Sbjct: 189 -----TVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRR 242
Query: 153 PKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVV 212
V ++ G+ H+ ++EV+LS GAI TP++L LSG+GP A L + I V+
Sbjct: 243 CTGVDIV-DSAFGHTHRL----TARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVL 297
Query: 213 LDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHH 272
+D+ +G+ + D+P V + +P+ + E+ ++G++ G R + H+
Sbjct: 298 VDSPGVGEHLQDHPEGVVQFEAKQPM---VAESTQWWEIGIFTPTEDGL--DRPDLMMHY 352
Query: 273 GIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFIL-EKIASPISTGELSLI 331
G + ++ L P + GF L + S G + L
Sbjct: 353 GSVPFDMNTLRHGYPTT---------------------ENGFSLTPNVTHARSRGTVRLR 391
Query: 332 NTNVDDNPSVSFNYFSHPL--DLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNAS 389
+ + D P V YF+ P D++ V G+R A +I +T + L+
Sbjct: 392 SRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRE-------LSPG 444
Query: 390 VRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKV------VSTEYKVLGIDRL 443
V A + + L+ + + T T++H G +G V + E +V G+ L
Sbjct: 445 VEAQTD---------EELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGL 495
Query: 444 RVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481
RV D S E NP TV+M+G I R G+
Sbjct: 496 RVADASVMPEHVTVNPNITVMMIGERCADLIRSARAGE 533
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 121/518 (23%), Positives = 210/518 (40%), Gaps = 105/518 (20%)
Query: 8 PQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKL------VNES 61
PQ F+ +ARA+V+GG SS N+ A + ++ W+AK +
Sbjct: 77 PQENGNSFMR-----HARAKVMGGCSSHNSCIAFWAPREDLDE--WEAKYGATGWNAEAA 129
Query: 62 FPWVER--------------------QIVHQPKQEGWQKALRDSLLDVGV--SPFNGFTY 99
+P +R +++ P ++ AL D+ G+ + FN T
Sbjct: 130 WPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGT- 188
Query: 100 DHIYGTKIGGTIFDRFGRRHTAAELLASAN-------PQKITVLIRATVQKIVFDTSGKR 152
T + G F + RR +S + + T+L +++VFD + +R
Sbjct: 189 -----TVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRR 242
Query: 153 PKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVV 212
V ++ G+ H+ ++EV+LS GAI TP++L LSG+GP A L + I V+
Sbjct: 243 CTGVDIV-DSAFGHTHRL----TARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVL 297
Query: 213 LDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHH 272
+D+ +G+ + D+P V + +P+ + E+ ++G++ G R + H+
Sbjct: 298 VDSPGVGEHLQDHPEGVVQFEAKQPM---VAESTQWWEIGIFTPTEDGL--DRPDLMMHY 352
Query: 273 GIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFIL-EKIASPISTGELSLI 331
G + ++ L P + GF L + S G + L
Sbjct: 353 GSVPFDMNTLRHGYPTT---------------------ENGFSLTPNVTHARSRGTVRLR 391
Query: 332 NTNVDDNPSVSFNYFSHPL--DLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNAS 389
+ + D P V YF+ P D++ V G+R A +I +T + L+
Sbjct: 392 SRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRE-------LSPG 444
Query: 390 VRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKV------VSTEYKVLGIDRL 443
V A + + L+ + + T T +H G +G V + E +V G+ L
Sbjct: 445 VEAQTD---------EELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPELRVKGVTGL 495
Query: 444 RVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481
RV D S E NP TV+M+G I R G+
Sbjct: 496 RVADASVMPEHVTVNPNITVMMIGERCADLIRSARAGE 533
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 162/371 (43%), Gaps = 36/371 (9%)
Query: 116 GRRHTA--AELLASANPQKITVLIRATVQKIVFD-TSGKRPKAVGVIFKDENGNQHQAFL 172
G+R ++ A L + + ++VLI A V K+V T+ P V + ++ G
Sbjct: 204 GQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVC 263
Query: 173 AGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPM--NAV 230
A K EV+LS G++GTP +L+LSG+G + +L + I +++N +G+ ++D+ + A
Sbjct: 264 A---KKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAF 320
Query: 231 FVPSNRPVEQSLIETVGIT-KLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQ 289
FV SN+ + ++ L + +G + + H + + T P
Sbjct: 321 FVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPA 380
Query: 290 RTPEAIQDYIRNKRTLPHEAFK----GGF--ILEKIASPISTGELSLINTNVDDNPSVSF 343
P + H A G F + + SP++ G++ L +N D P ++
Sbjct: 381 AGPNSAHWETIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINP 440
Query: 344 NYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTND 403
Y S D+ + V+ + + + + ++ V + +R D
Sbjct: 441 QYLSTEFDIFTMIQAVKSNLRFLSGQAWADF-------VIRPFDPRLR--------DPTD 485
Query: 404 TKSLEQFCKDTVITIWHYHGGCHVGK------VVSTEYKVLGIDRLRVVDGSTYDESPGT 457
++E + +D TI+H G + VV + KV G+D LR+VDGS +P
Sbjct: 486 DAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNA 545
Query: 458 NPQGTVLMMGR 468
+ QG + ++G+
Sbjct: 546 HTQGPIYLVGK 556
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 94/415 (22%), Positives = 173/415 (41%), Gaps = 85/415 (20%)
Query: 100 DHIYGTKIGGTIF--DRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVG 157
++IY ++ G D R + L N IT++ ++++ + + + K V
Sbjct: 186 ENIYDGEMDGLTHCCDTIYRGQRSGSFLFVKNKPNITIVPEVHSKRLIINEADRTCKGVT 245
Query: 158 VIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAH 217
V+ GN+ F EVILS G TP++L LSG+GP EL + I+ ++D+ H
Sbjct: 246 VV--TAAGNELNFFA----DREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRH 299
Query: 218 IGKGMADNP------------------------MNAVFVPSNR----PVEQSLIETVGIT 249
+G+ + D+P +AV N+ PV L+E VG
Sbjct: 300 VGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFP 359
Query: 250 KLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEA 309
++ Y+E + + +++ +A G+ P Q P D++ + A
Sbjct: 360 RIDKYLEKDAEYRKAK----------AANGGKDPFSPLGQ--PHFELDFV----CMFGTA 403
Query: 310 FKGGF----------ILEKIASPIST-GELSLINTNVDDNPSVSFNYFSHPLDLKRCVDG 358
F+ F ++ + PIS GE++L + + P+++ N+F++ LD+ +G
Sbjct: 404 FQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREG 463
Query: 359 VRMAAKIV-QSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVIT 417
+R + ++ + + F + + + E L++ K + + D T
Sbjct: 464 IRFSYDLLFKGEGFKDLVES-EYPWEMPLDSD---------------KEMHRAVLDRCQT 507
Query: 418 IWHYHGGCHVGK-----VVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 467
+H G + K VV + KV GI +LRV D S P Q +V +G
Sbjct: 508 AFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVG 562
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 120/524 (22%), Positives = 186/524 (35%), Gaps = 130/524 (24%)
Query: 29 LGGGSSINAGFYTRASSQFIERMGWDAKLVNESFPW---------VER-------QI--- 69
LGG + +N G +TR ++ W+ NE + W ER QI
Sbjct: 100 LGGSTLVNGGTWTRPHKAQVDS--WETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAG 157
Query: 70 -------------VHQ-PKQEGWQ-----KALRDSLLDVGVSPFNGFTYDHIYGTKIGGT 110
VH P+ G KAL ++ D GV F +G +
Sbjct: 158 HYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPN 217
Query: 111 IFDRFGRRHTAAELLASANPQK--ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQH 168
R AA N Q+ + VL V K++ +G P+AVGV F GN H
Sbjct: 218 TLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTH 277
Query: 169 QAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMN 228
+ K EV+L+ G+ +P +L+ SG+G K+ LE L I V+D +G + D
Sbjct: 278 NVY----AKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVD-LPVGLNLQDQTTA 332
Query: 229 AVFVPSNRPVEQSLIETVGI--TKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIP 286
V +S I + G + + + FG+ + H +L
Sbjct: 333 TV---------RSRITSAGAGQGQAAWFATFNETFGDYSEKAH-----------ELLNTK 372
Query: 287 PKQRTPEAI------------------QDYIRNKRTLPHEAFKGGFILEKIAS------- 321
+Q EA+ +D+I N E F +AS
Sbjct: 373 LEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELF---LDTAGVASFDVWDLL 429
Query: 322 PISTGELSLINTNVDDNPSVSF-----NYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQ 376
P + G + ++ D +P + YF + LDL ++A I S Y
Sbjct: 430 PFTRGYVHIL----DKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFA 485
Query: 377 CDQKSVEAI-LNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGC-----HVGKV 430
+ + + +A + A +P H +H G C +G V
Sbjct: 486 GETIPGDNLAYDADLSAWTEYIPYHFRPN--------------YHGVGTCSMMPKEMGGV 531
Query: 431 VSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKI 474
V +V G+ LRV+DGS P T V+ + M +KI
Sbjct: 532 VDNAARVYGVQGLRVIDGSI----PPTQMSSHVMTVFYAMALKI 571
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 100/461 (21%), Positives = 173/461 (37%), Gaps = 92/461 (19%)
Query: 24 ARARVLGGGSSINAGFYTRASSQFIE---------RMGWDAKL----VNESFPWVERQI- 69
AR R++GG S ++A Y R + R GWD L E P I
Sbjct: 92 ARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGIH 151
Query: 70 -------VHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGT---IFDRFGRRH 119
+H P E L + ++ G S H G IG T + R GRR
Sbjct: 152 GKGGPLPIHLPADE--VSPLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGRRV 209
Query: 120 TAAELL---ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNP 176
TAA+ A + +T+L + V+++ + G + +++ V+ G Q A + +
Sbjct: 210 TAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQVRSLEVV-----GRQGSAEVFAD- 261
Query: 177 KSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNA-VFVPSN 235
+++L GA+ +P +L SG+GP L+ + ++D IG+ + D+ + A +
Sbjct: 262 --QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAAR 319
Query: 236 RPVEQSLIETVGITKLGVYIEASS--GFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPE 293
+PV S ++ ++ Y+ A S G+ + C + +E
Sbjct: 320 KPVPPSRLQH---SESMAYMRADSFTAAGQPEIVVGCGVAPIVSE--------------- 361
Query: 294 AIQDYIRNKRTLPHEAFKGGF-ILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDL 352
+ P A + +L I P S G + + + D + Y D
Sbjct: 362 ----------SFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDR 411
Query: 353 KRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCK 412
+R + + I + + + L+P N ++ F
Sbjct: 412 ERFRRALEASRTIGHRDELAGWRERE-----------------LLPGTPNSAAEMDDFIA 454
Query: 413 DTVITIWHYHGGCHVGK----VVSTEYKVLGIDRLRVVDGS 449
+VIT H G C +GK VV ++ +D L VVD S
Sbjct: 455 RSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDAS 495
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 94/422 (22%), Positives = 163/422 (38%), Gaps = 64/422 (15%)
Query: 80 KALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQK--ITVLI 137
KAL +++ +GV F H G + D R AA N Q+ + +L
Sbjct: 191 KALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILT 250
Query: 138 RATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 197
V K++F + P+AVGV F F K EV+L+ G+ +P +L+ SG
Sbjct: 251 GQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSG 306
Query: 198 VGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEA 257
+G K+ L++ N++ +LD +G M D V S+R G + +
Sbjct: 307 IGLKSVLDQANVTQLLD-LPVGINMQDQTTTTV---SSRASSAG----AGQGQAVFFANF 358
Query: 258 SSGFG----ESRDSIHCHHGIMSAEI---GQLSTIPPKQRTPEAIQDYIRNKRTLPHEAF 310
+ FG ++RD ++ + E G + + E ++++ ++ E F
Sbjct: 359 TETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELF 418
Query: 311 -----KGGFILEKIASPISTGELSLINTN-----VDDNPSVSFNYFSHPLDLKRCVDGVR 360
K F L + P + G + +++++ ++P +F + DL +
Sbjct: 419 MDTEGKINFDLWDLI-PFTRGSVHILSSDPYLWQFANDPK----FFLNEFDLLGQAAASK 473
Query: 361 MAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKS---LEQFCKDTVIT 417
+A + Q +++ NLV T S L+ F +
Sbjct: 474 LARDL-----------TSQGAMKEYFAGETLPGYNLVQNATLSQWSDYVLQNFRPN---- 518
Query: 418 IWHYHGGC-----HVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGV 472
WH C +G VV KV G LRV+DGS P T V+ + M +
Sbjct: 519 -WHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSI----PPTQVSSHVMTIFYGMAL 573
Query: 473 KI 474
K+
Sbjct: 574 KV 575
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 44/236 (18%)
Query: 28 VLGGGSSINAGFYTRASS-QFIERMGWDAKLVNESFPWVER-----QIVHQPKQEGWQKA 81
++GGG+S+N Y + F +GW + N + P+ + P +G Q+
Sbjct: 87 LVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA-PYTSKLSSRLPSTDHPSTDG-QRY 144
Query: 82 LRDSLLDVGVSPFNGFTY------------DHIYGTKIGGTIFDRF-GRRH--TAAELLA 126
L S +V G Y DH++G + FD G+R A L
Sbjct: 145 LEQSF-NVVSQLLKGQGYNQATINDNPNYKDHVFGY----SAFDFLNGKRAGPVATYLQT 199
Query: 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186
+ T V +V + S + +GV D + F+ PK VILS GA
Sbjct: 200 ALARPNFTFKTNVMVSNVVRNGS----QILGVQTNDPTLGPN-GFIPVTPKGRVILSAGA 254
Query: 187 IGTPQMLKLSGVGPKAELEKLNISVVLD----------NAHIGKGMADNP-MNAVF 231
GT ++L SG+GP ++ + + N +G DNP +N VF
Sbjct: 255 FGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVF 310
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 390 VRANVNLVPKHT----NDTKSLEQFCK---DTVITIWHYHGGCHVGK-----VVSTEYKV 437
V +N+ +P T + T++LE++ + H+ +G VV + KV
Sbjct: 438 VVSNIGSIPGLTMITPDVTQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKV 497
Query: 438 LGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 475
G + L +VD P NPQGT++ KIL
Sbjct: 498 FGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 535
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 44/236 (18%)
Query: 28 VLGGGSSINAGFYTRASS-QFIERMGWDAKLVNESFPWVER-----QIVHQPKQEGWQKA 81
++GGG+S+N Y + F +GW + N + P+ + P +G Q+
Sbjct: 92 LVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA-PYTSKLSSRLPSTDHPSTDG-QRY 149
Query: 82 LRDSLLDVGVSPFNGFTY------------DHIYGTKIGGTIFDRF-GRRH--TAAELLA 126
L S +V G Y DH++G + FD G+R A L
Sbjct: 150 LEQSF-NVVSQLLKGQGYNQATINDNPNYKDHVFGY----SAFDFLNGKRAGPVATYLQT 204
Query: 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186
+ T V +V + S + +GV D + F+ PK VILS GA
Sbjct: 205 ALARPNFTFKTNVMVSNVVRNGS----QILGVQTNDPTLGPN-GFIPVTPKGRVILSAGA 259
Query: 187 IGTPQMLKLSGVGPKAELEKLNISVVLD----------NAHIGKGMADNP-MNAVF 231
GT ++L SG+GP ++ + + N +G DNP +N VF
Sbjct: 260 FGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVF 315
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 390 VRANVNLVPKHT----NDTKSLEQFCK---DTVITIWHYHGGCHVGK-----VVSTEYKV 437
V +N+ +P T + T++LE++ + H+ +G VV + KV
Sbjct: 443 VVSNIGSIPGLTMITPDVTQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKV 502
Query: 438 LGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 475
G + L +VD P NPQGT++ KIL
Sbjct: 503 FGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKIL 540
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 407 LEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMM 466
L+ F D +H GGC +GK +V G L V DGS S G NP T+ +
Sbjct: 432 LKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITAL 488
Query: 467 GRYMGVKILRQ 477
+I++Q
Sbjct: 489 AERNVERIIKQ 499
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 407 LEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMM 466
L+ F D +H GGC +GK +V G L V DGS S G NP T+ +
Sbjct: 432 LKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITAL 488
Query: 467 GRYMGVKILRQ 477
+I++Q
Sbjct: 489 AERNVERIIKQ 499
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 407 LEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMM 466
L+ F D +H GGC +GK +V G L V DGS S G NP T+ +
Sbjct: 430 LKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITAL 486
Query: 467 GRYMGVKILRQ 477
+I++Q
Sbjct: 487 AERNVERIIKQ 497
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 408 EQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 467
+ FC + + GGC +GK +V G L V DGS S G NP T+ +
Sbjct: 437 DDFCYNPL-------GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALA 489
Query: 468 RYMGVKILRQ 477
+I++Q
Sbjct: 490 ERNVERIIKQ 499
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 407 LEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMM 466
L+ F D +H GGC +GK +V G L V DGS S G +P T+ +
Sbjct: 432 LKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVDPFVTITAL 488
Query: 467 GRYMGVKILRQ 477
+I++Q
Sbjct: 489 AERNVERIIKQ 499
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 423 GGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQ 477
GGC +GK +V G L V DGS S G NP T+ + +I++Q
Sbjct: 447 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 501
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 423 GGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQ 477
GGC +GK +V G L V DGS S G NP T+ + +I++Q
Sbjct: 445 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 423 GGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQ 477
GGC +GK +V G L V DGS S G NP T+ + +I++Q
Sbjct: 445 GGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ 499
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 407 LEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMM 466
L+ F D +H GGC +GK +V G L V DGS S G P T+ +
Sbjct: 432 LKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVLPFVTITAL 488
Query: 467 GRYMGVKILRQ 477
+I++Q
Sbjct: 489 AERNVERIIKQ 499
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of
10- Formyltetrahydrofolate Dehydrogenase
Length = 310
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 14/107 (13%)
Query: 287 PKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSL---INTNVDDNPSVSF 343
P+ R AI TL H KGGF + + TG+L L DD S +
Sbjct: 111 PRHRGASAIN------WTLIHGDKKGGFTIFWADDGLDTGDLLLQKECEVLPDDTVSTLY 164
Query: 344 NYFSHPLDLKRCVDGVRM-----AAKIVQSKHFLNYTQCDQKSVEAI 385
N F P +K V VR+ A + QS+ Y +K I
Sbjct: 165 NRFLFPEGIKGMVQAVRLIAEGTAPRCPQSEEGATYEGIQKKETAKI 211
>pdb|4EYE|A Chain A, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
pdb|4EYE|B Chain B, Crystal Structure Of A Probable Oxidoreductase From
Mycobacterium Abscessus Solved By Iodide Ion Sad
Length = 342
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 19/75 (25%)
Query: 30 GGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQEGWQKALRDSL--- 86
G G+ + A A+++F++ +G D L P +EGW KA+R++
Sbjct: 182 GMGAKVIAVVNRTAATEFVKSVGADIVL---------------PLEEGWAKAVREATGGA 226
Query: 87 -LDVGVSPFNGFTYD 100
+D+ V P G +D
Sbjct: 227 GVDMVVDPIGGPAFD 241
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10-
Formyltetrahydrofolate 2 Dehydrogenase
pdb|2CFI|A Chain A, The Hydrolase Domain Of Human 10-Fthfd In Complex With 6-
Formyltetrahydropterin
Length = 329
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 287 PKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSL---INTNVDDNPSVSF 343
P+ R AI TL H KGGF + + TG+L L DD S +
Sbjct: 133 PRHRGASAIN------WTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLY 186
Query: 344 NYFSHPLDLKRCVDGVRMAAK 364
N F P +K V VR+ A+
Sbjct: 187 NRFLFPEGIKGMVQAVRLIAE 207
>pdb|1VR5|A Chain A, Crystal Structure Of Oligopeptide Abc Transporter,
Periplasmic Oligopeptide-Binding (Tm1223) From
Thermotoga Maritima At 1.73 A Resolution
pdb|1VR5|B Chain B, Crystal Structure Of Oligopeptide Abc Transporter,
Periplasmic Oligopeptide-Binding (Tm1223) From
Thermotoga Maritima At 1.73 A Resolution
Length = 547
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 381 SVEAILNASVRANVNLVPKHTNDTKS------------LEQFCKDTVITIWHYHGGCHVG 428
S+++I V+ +N+ PK+ + +K L F TIW Y G
Sbjct: 383 SIQSIAEDLVKVGINVEPKYPDYSKYADDLYGGKFDLILNNFTTGVSATIWSYFNGVFYP 442
Query: 429 KVVSTEYKVLG 439
V +EY G
Sbjct: 443 DAVESEYSYSG 453
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,632,558
Number of Sequences: 62578
Number of extensions: 613055
Number of successful extensions: 1621
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1549
Number of HSP's gapped (non-prelim): 52
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)