BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011442
(485 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
Length = 594
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/484 (72%), Positives = 406/484 (83%), Gaps = 2/484 (0%)
Query: 3 LADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNESF 62
LAD S SASQ F+STDGV NARARVLGGGS INAGFY+RA + F++R GWD KLV ES+
Sbjct: 112 LADISASSASQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESY 171
Query: 63 PWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAA 122
PWVER+IVHQPK WQKALRDSLL+VGV PFNGFTYDH+ GTKIGGTIFDRFGRRHTAA
Sbjct: 172 PWVEREIVHQPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAA 231
Query: 123 ELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVIL 182
ELLA ANPQK+ VLI ATVQKIVFDTSG RP+ GVIFKDE GNQHQA L+ SEVIL
Sbjct: 232 ELLAYANPQKLRVLIYATVQKIVFDTSGTRPRVTGVIFKDEKGNQHQALLSNRKGSEVIL 291
Query: 183 SCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSL 242
S GAIG+PQML LSG+GPK EL++L I VVL+N H+GKGMADNPMN + VPS P+EQSL
Sbjct: 292 SSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSL 351
Query: 243 IETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYI-RN 301
I+TVGITK+GVY+EAS+GFG+S +SIH H+GIMS + STIP KQR PEA Q YI RN
Sbjct: 352 IQTVGITKMGVYVEASTGFGQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRN 411
Query: 302 KRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRM 361
K L HEAF G FILEK+A PIS G LSL+NTNVDDNPSV+FNYF HP+DL+RCV+ +R+
Sbjct: 412 KYQL-HEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRL 470
Query: 362 AAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHY 421
+K+V S FLNYTQCD+++V +L+ SV+AN+NL PK NDTKS+ QFCKDTV+TIWHY
Sbjct: 471 VSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHY 530
Query: 422 HGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481
HGGC VGKVVS KVLG+DRLRV+DGST+DESPGTNPQ T++MMGRYMGVKILR+RLG
Sbjct: 531 HGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590
Query: 482 AAGV 485
AGV
Sbjct: 591 KAGV 594
>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050
PE=2 SV=1
Length = 552
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/485 (43%), Positives = 293/485 (60%), Gaps = 42/485 (8%)
Query: 2 TLADTSP-QSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLV 58
TL D + S +Q FIS +GV NAR RVLGG S+INAGFY+RA QF E G WD V
Sbjct: 102 TLTDVNNFDSPAQSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWDLSSV 161
Query: 59 NESFPWVERQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRR 118
N+S+ WVER IV +P+ WQ A+RD+LL+VGV PFNGFT +H GTKIGG+ FDR GRR
Sbjct: 162 NQSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDRTGRR 221
Query: 119 HTAAELLASANPQKITVLIRATVQKIVF----DTSGKRPKAVGVIFKDENGNQHQAFLAG 174
H++A+LL A I V + ATV++++ SG A+GV+++D+ G H A +
Sbjct: 222 HSSADLLRYARSSNIRVAVYATVERVLLASSPSVSGSNVSAIGVVYRDQLGRFHHALI-- 279
Query: 175 NPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPS 234
+ EVILS GA+G+PQ+L LSG+GP++ L I V LD H+G + DNP N + +
Sbjct: 280 RDRGEVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPRNGISIVP 339
Query: 235 NRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEA 294
P+E SLI+ VG+T+ G ++EA+S +H
Sbjct: 340 PVPMENSLIQVVGVTEDGAFLEAASNVIPFASPLHSV----------------------- 376
Query: 295 IQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKR 354
+IR + + I+EKI P+S G L L +T+V NP V FNYFS P DL+R
Sbjct: 377 ---FIRAPASPLYVPVTT--IMEKILGPVSIGLLRLASTDVRINPVVRFNYFSDPQDLER 431
Query: 355 CVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDT 414
CV+G R +I++S+ ++ E N R +P ++ + FC+ T
Sbjct: 432 CVNGTRKIGEILRSRAMQDFMIR-----EWFGNRRFRFVGAPLPVDQSNDLVMADFCRRT 486
Query: 415 VITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKI 474
V TIWHYHGG VGKVV ++ KV+G++ LR+VDGST++ SPGTNPQ T++M+GRYMG+K+
Sbjct: 487 VSTIWHYHGGAVVGKVVDSDLKVIGVNSLRLVDGSTFNISPGTNPQATLMMLGRYMGLKM 546
Query: 475 LRQRL 479
LR+R+
Sbjct: 547 LRERM 551
>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1
Length = 573
Score = 338 bits (867), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 176/467 (37%), Positives = 267/467 (57%), Gaps = 40/467 (8%)
Query: 15 FISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVERQIVHQ 72
F+S DG+ N R RVLGG S INAG Y RA++ F + G WD LVN+++ WVE IV +
Sbjct: 116 FVSEDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMDLVNQTYEWVEDTIVFE 175
Query: 73 PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQK 132
P + WQ + + L+ G+ P NGF+ DH+ GT++ G+ FD G RH + ELL +P
Sbjct: 176 PDSQTWQTVIGTAYLEAGILPNNGFSVDHLAGTRLTGSTFDNNGTRHASDELLNKGDPNN 235
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ V ++A V+KI+F ++ A+GVI+ D NG HQAF+ G + EVILS G IG+PQ+
Sbjct: 236 LRVAVQAAVEKIIFSSNTSGVTAIGVIYTDSNGTTHQAFVRG--EGEVILSAGPIGSPQL 293
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLG 252
L LSGVGP++ L LNISVV + ++G+ + DNP N + + P+E S + +GIT
Sbjct: 294 LLLSGVGPESYLTSLNISVVASHPYVGQYIYDNPRNFINILPPNPIEASTVTVLGITS-- 351
Query: 253 VYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG 312
D C + + S P LP++ F
Sbjct: 352 -------------DFYQCSISSLPFDTPPFSFFP-------------TTSYPLPNQTF-- 383
Query: 313 GFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHF 371
I+ K+ P+S G ++L +++V P+V FNY+S+ DL CV G++ +++ +
Sbjct: 384 AHIVNKVPGPLSHGTVTLNSSSDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDAL 443
Query: 372 LNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVV 431
Y D ++ + +P++ D + E FC+++V + WHYHGGC VGKV+
Sbjct: 444 EPYKVEDLPGIDGFNILGIP-----LPENQTDDAAFETFCRESVASYWHYHGGCLVGKVL 498
Query: 432 STEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478
++V GI+ LRVVDGST+ +P ++PQG LM+GRYMG++IL++R
Sbjct: 499 DDGFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGIQILQER 545
>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1
Length = 563
Score = 335 bits (859), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 184/467 (39%), Positives = 265/467 (56%), Gaps = 41/467 (8%)
Query: 15 FISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVERQIVHQ 72
F+S DG+ N R RVLGG S INAG Y RA++ G WD LVN+++ WVE IV++
Sbjct: 116 FVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYK 175
Query: 73 PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQK 132
P + WQ + + L+ GV P +GF+ DH GT+I G+ FD G RH A ELL N
Sbjct: 176 PNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNN 235
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ V + A+V+KI+F ++ A GVI++D NG HQAF+ K EVI+S G IGTPQ+
Sbjct: 236 LRVGVHASVEKIIF-SNAPGLTATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQL 292
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLG 252
L LSGVGP++ L LNI VVL + ++G+ + DNP N + + P+E +++ +GI
Sbjct: 293 LLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGI---- 348
Query: 253 VYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG 312
S D C + T PP P A LP+ F
Sbjct: 349 -----------SNDFYQCSFSSLPF------TTPPFGFFPSA-------SYPLPNSTF-- 382
Query: 313 GFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHF 371
K+A P+S G L+L ++NV +P+V FNY+S+ DL CV G++ +++ +
Sbjct: 383 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 442
Query: 372 LNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVV 431
Y D VE + +PK D + E FC+++V + WHYHGGC VGKV+
Sbjct: 443 KPYKVEDLPGVEGFNILGIP-----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVL 497
Query: 432 STEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478
+++V GI+ LRVVDGST+ +P ++PQG LM+GRY+G+KIL++R
Sbjct: 498 DGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 544
>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1
Length = 563
Score = 334 bits (857), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 183/467 (39%), Positives = 263/467 (56%), Gaps = 41/467 (8%)
Query: 15 FISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVERQIVHQ 72
F+S DG+ N R RVLGG S INAG Y RA++ G WD LVN+++ WVE IV +
Sbjct: 116 FVSEDGIDNVRGRVLGGTSMINAGVYARANTSIYSASGVDWDMDLVNKTYEWVEDTIVFK 175
Query: 73 PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQK 132
P + WQ + L+ GV P +GF+ DH GT+I G+ FD G RH A ELL N
Sbjct: 176 PNYQPWQSVTGTAFLEAGVDPNHGFSLDHEAGTRITGSTFDNKGTRHAADELLNKGNSNN 235
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ V + A+V+KI+F ++ A GVI++D NG H+AF+ K EVI+S G IGTPQ+
Sbjct: 236 LRVGVHASVEKIIF-SNAPGLTATGVIYRDSNGTPHRAFVRS--KGEVIVSAGTIGTPQL 292
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLG 252
L LSGVGP++ L LNI VVL + ++G+ + DNP N + + P+E +++ +GI
Sbjct: 293 LLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGI---- 348
Query: 253 VYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG 312
S D C + T PP P LP+ F
Sbjct: 349 -----------SNDFYQCSFSSLPF------TTPPFSFFPST-------SYPLPNSTF-- 382
Query: 313 GFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHF 371
K+A P+S G L+L ++NV +P+V FNY+S+P DL CV G++ +++ +
Sbjct: 383 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDAL 442
Query: 372 LNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVV 431
Y D +E + +PK D + E FC+++V + WHYHGGC VGKV+
Sbjct: 443 KPYKVEDLPGIEGFNILGIP-----LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVL 497
Query: 432 STEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478
+++V GID LRVVDGST+ +P ++PQG LM+GRY+G+KIL++R
Sbjct: 498 DGDFRVTGIDALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER 544
>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1
Length = 574
Score = 334 bits (857), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 181/469 (38%), Positives = 259/469 (55%), Gaps = 44/469 (9%)
Query: 15 FISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVERQIVHQ 72
F+S DG+ N R+R+LGG + INAG Y RA+ F G WD LVNE++ WVE IV++
Sbjct: 117 FVSEDGIDNVRSRILGGTTIINAGVYARANESFYNNSGVEWDLDLVNEAYEWVEDAIVYK 176
Query: 73 PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQK 132
P + WQ + L+ GV P NGF H GT++ G+ FD G RH + ELL +P
Sbjct: 177 PSNQSWQSITGTAFLEAGVHPDNGFGLVHEEGTRLTGSTFDNSGTRHASDELLNKGDPDN 236
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ V + A VQKI+F T AVGV++ D NG H+A ++G K EVILS G +GTPQ+
Sbjct: 237 LKVAVEAAVQKIIFSTESSGLTAVGVVYTDSNGTSHRALVSG--KGEVILSAGTLGTPQL 294
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLG 252
L LSGVGP++ L LNISVV + ++G+ + DNP N + + P+E S + +GIT
Sbjct: 295 LLLSGVGPESYLTSLNISVVASHPYVGQYVNDNPRNFINILPPNPIEPSTVTVLGITS-- 352
Query: 253 VYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG 312
D C + + S P LP++ F
Sbjct: 353 -------------DFYQCSLSSLPFDTPPFSLFP-------------TTSYPLPNQTF-- 384
Query: 313 GFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHF 371
I+ K+ P+S G L+L ++NV P+V FNY S P+DL CV G++ + +
Sbjct: 385 AHIVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCSDPVDLTHCVSGMKKIGVFLSTDAL 444
Query: 372 LNYTQCDQKSVEA--ILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK 429
Y D ++ IL + P++ D + E+FC+DTV + WHYHGG VGK
Sbjct: 445 KPYKVDDLPGIDGFNILGTPL-------PENQTDDAAFEKFCRDTVASYWHYHGGAIVGK 497
Query: 430 VVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478
V+ ++V GI+ LRVVDGST+ +P ++PQG LM+GRY+G KI+++R
Sbjct: 498 VIDGNFRVTGINALRVVDGSTFPATPASHPQGFYLMLGRYVGTKIVQER 546
>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1
Length = 576
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/480 (38%), Positives = 267/480 (55%), Gaps = 48/480 (10%)
Query: 9 QSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVE 66
Q+ + F+S DG+ N R RVLGG S INAG Y RA++ F + G WD LVN+++ WVE
Sbjct: 111 QTPVERFVSGDGIDNVRGRVLGGTSMINAGVYVRANTSFFNQTGIEWDMDLVNKTYDWVE 170
Query: 67 RQIVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLA 126
IV +P + WQ + L+VG+ P NGF+ DH+ GT++ G+ FD G RH + ELL
Sbjct: 171 DTIVFKPDFQFWQNLTGTAFLEVGILPDNGFSLDHLEGTRLTGSTFDNNGTRHASDELLN 230
Query: 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186
+P + V + A V+KI+F + A+GVI+ D NG HQAF+ G+ EVILS G
Sbjct: 231 KGDPNNLRVAVHAAVEKIIFSSDSSGVTAIGVIYTDSNGTTHQAFVRGD--GEVILSAGP 288
Query: 187 IGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETV 246
IG+PQ+L LSGVG ++ L LNISVV + ++G+ + DNP N + + P+E S + +
Sbjct: 289 IGSPQLLLLSGVGLESYLTSLNISVVASHPYVGQYIYDNPRNFINILPPNPIEASTVTVL 348
Query: 247 GITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIP----PKQRTPEAIQDYIRNK 302
GIT D C S ST P P P
Sbjct: 349 GITS---------------DFYQC-----SISSLPFSTAPFGFFPNPTYP---------- 378
Query: 303 RTLPHEAFKGGFILEKIASPISTGELSLINT-NVDDNPSVSFNYFSHPLDLKRCVDGVRM 361
LP+ F I+ K+ P+S G + L +T +V P+V+FNY+S+ DL CV G++
Sbjct: 379 --LPNTTF--AHIVNKVPGPLSHGTVLLQSTSDVRVAPNVTFNYYSNTTDLAHCVSGMKK 434
Query: 362 AAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHY 421
+ + S Y D +E + +P++ D + E FC++ V + WHY
Sbjct: 435 IGEFLSSDALKPYKVEDLPGIEGFDILGIP-----LPENQTDDAAFETFCREAVASYWHY 489
Query: 422 HGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481
HGGC VG+V+ +++V GI+ LRVVDGST+ +P ++PQG LM+GRYMG KIL++RL
Sbjct: 490 HGGCLVGEVLDDDFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGTKILQERLAS 549
>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1
Length = 559
Score = 325 bits (832), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 179/469 (38%), Positives = 270/469 (57%), Gaps = 44/469 (9%)
Query: 15 FISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVERQIVHQ 72
F+S DG+ N RAR+LGG + INAG Y RA+ F + G WD LVN+++ WVE IV +
Sbjct: 116 FVSEDGIDNVRARILGGTTIINAGVYARANISFYSQTGIEWDLDLVNKTYEWVEDAIVVK 175
Query: 73 PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQK 132
P + WQ + + L+ G+ P NGF+ DH GT++ G+ FD G RH A ELL +P
Sbjct: 176 PNNQSWQSVIGEGFLEAGILPDNGFSLDHEAGTRLTGSTFDNNGTRHAADELLNKGDPNN 235
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ V ++A+V+KI+F ++ A+GVI+ D +GN HQAF+ GN EVI+S G IGTPQ+
Sbjct: 236 LLVAVQASVEKILFSSNTSNLSAIGVIYTDSDGNSHQAFVRGN--GEVIVSAGTIGTPQL 293
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAV--FVPSNRPVEQSLIETVGITK 250
L LSGVGP++ L LNI+VV N ++G+ + +NP N + F P+ P+E S++ +GI
Sbjct: 294 LLLSGVGPESYLSSLNITVVQPNPYVGQFLYNNPRNFINNFPPN--PIEASVVTVLGIRS 351
Query: 251 LGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAF 310
Y + S LS++P TP + LP+ F
Sbjct: 352 --DYYQVS-----------------------LSSLP--FSTP-PFSLFPTTSYPLPNSTF 383
Query: 311 KGGFILEKIASPISTGELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSK 369
I+ ++ P+S G ++L +++V P++ FNY+S+ DL CV G++ ++++K
Sbjct: 384 --AHIVSQVPGPLSHGSVTLNSSSDVRIAPNIKFNYYSNSTDLANCVSGMKKLGDLLRTK 441
Query: 370 HFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK 429
Y D ++ V +P++ D S E FC D V + WHYHGG VGK
Sbjct: 442 ALEPYKARDVLGIDGFNYLGVP-----LPENQTDDASFETFCLDNVASYWHYHGGSLVGK 496
Query: 430 VVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478
V+ ++V+GI LRVVD ST+ P ++PQG LM+GRY+G++IL++R
Sbjct: 497 VLDDSFRVMGIKALRVVDASTFPYEPNSHPQGFYLMLGRYVGLQILQER 545
>sp|Q7X2H8|CHOX_ARTGO Choline oxidase OS=Arthrobacter globiformis GN=codA PE=1 SV=1
Length = 546
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 121/518 (23%), Positives = 211/518 (40%), Gaps = 105/518 (20%)
Query: 8 PQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKL------VNES 61
PQ F+ +ARA+V+GG SS N+ A + ++ W+AK +
Sbjct: 77 PQENGNSFMR-----HARAKVMGGCSSHNSCIAFWAPREDLDE--WEAKYGATGWNAEAA 129
Query: 62 FPWVER--------------------QIVHQPKQEGWQKALRDSLLDVGV--SPFNGFTY 99
+P +R +++ P ++ AL D+ G+ + FN T
Sbjct: 130 WPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTGT- 188
Query: 100 DHIYGTKIGGTIFDRFGRRHTAAELLASAN-------PQKITVLIRATVQKIVFDTSGKR 152
T + G F + RR +S + + T+L +++VFD + +R
Sbjct: 189 -----TVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRR 242
Query: 153 PKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVV 212
V ++ G+ H+ ++EV+LS GAI TP++L LSG+GP A L + I V+
Sbjct: 243 CTGVDIV-DSAFGHTHRL----TARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVL 297
Query: 213 LDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHH 272
+D+ +G+ + D+P V + +P+ + E+ ++G++ G R + H+
Sbjct: 298 VDSPGVGEHLQDHPEGVVQFEAKQPM---VAESTQWWEIGIFTPTEDGL--DRPDLMMHY 352
Query: 273 GIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFIL-EKIASPISTGELSLI 331
G + ++ L P + GF L + S G + L
Sbjct: 353 GSVPFDMNTLRHGYPTT---------------------ENGFSLTPNVTHARSRGTVRLR 391
Query: 332 NTNVDDNPSVSFNYFSHPL--DLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNAS 389
+ + D P V YF+ P D++ V G+R A +I +T + L+
Sbjct: 392 SRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRE-------LSPG 444
Query: 390 VRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKV------VSTEYKVLGIDRL 443
V A + + L+ + + T T++H G +G V + E +V G+ L
Sbjct: 445 VEAQTD---------EELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGL 495
Query: 444 RVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481
RV D S E NP TV+M+G I R G+
Sbjct: 496 RVADASVMPEHVTVNPNITVMMIGERCADLIRSARAGE 533
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 121/493 (24%), Positives = 205/493 (41%), Gaps = 72/493 (14%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIER---MGWDAKLVNESFPWVERQIVHQPKQEGWQ-- 79
R +V+GG SSIN Y R ++ R +G + P+ +R +EGW+
Sbjct: 79 RGKVIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHSHGGEEGWRGT 138
Query: 80 ------------KALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDR---FGRRHTAA-E 123
L + ++ G T D+ G + G + ++ GRR +AA
Sbjct: 139 DGPLHVRRGDARNPLFHAFIEAGKQAGFEATEDYNGGKQEGFGLMEQTTWMGRRWSAATA 198
Query: 124 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILS 183
L A + LIR +K+V + +A GV + E G + + A SEVI+S
Sbjct: 199 YLKPALKRPNVELIRCFARKVVIENG----RATGV--EIERGGKIEIVKA---NSEVIVS 249
Query: 184 CGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSN-RPVEQSL 242
+ +P++L LSG+GP L+++ I V +D +G + D+ M F ++ +PV SL
Sbjct: 250 ASSFNSPKLLMLSGIGPGQHLQEMGIEVKIDRPGVGANLQDH-MEFYFQQTSLKPV--SL 306
Query: 243 IETVGITKLGV----YIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDY 298
+ G+ ++ SG G S C + + G P AI
Sbjct: 307 YSWLPWYMQGIVGAQWMFFKSGLGTSNQFEAC--AFLRSAPGVKQPDIQYHFLPVAIS-- 362
Query: 299 IRNKRTLPHEAFKG--GFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCV 356
K F+ G+ L K S G ++L +++ +P + FNY SHP D ++
Sbjct: 363 YDGKAAAKSHGFQAHVGYNLSK-----SRGAVTLRSSDPKADPVIRFNYMSHPEDWEKFR 417
Query: 357 DGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVI 416
VR+ +I K F +Y + + P D + ++ F ++ +
Sbjct: 418 HCVRLTREIFGQKAFDDYRGPE---------------IQPGPDVQTDDQ-IDAFLREHLE 461
Query: 417 TIWHYHGGCHVGK------VVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYM 470
+ +H G C +G VV + +V+G++ LRV D S + N G +M G
Sbjct: 462 SAYHPCGTCKMGSKDDPMAVVDPDTRVIGVEGLRVADSSIFPSLTYGNLNGPSIMTGEKA 521
Query: 471 GVKIL-RQRLGKA 482
IL + RL ++
Sbjct: 522 ADHILGKPRLARS 534
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 129/495 (26%), Positives = 203/495 (41%), Gaps = 76/495 (15%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIER---MGWDAKLVNESFPWVERQIVHQPKQEGWQKA 81
R +V+GG SSIN Y R S+ R +G + P+ +R +EGW+
Sbjct: 79 RGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVLPYYKRMEHSHGGEEGWRGT 138
Query: 82 LRDSLLDVGVSP-----FNGF-----------TYDHIYGTKIGGTIFDRF---GRRHTAA 122
D L V P F+ F T D+ + G + ++ GRR +AA
Sbjct: 139 --DGPLHVQRGPVKNPLFHAFIEAGKEAGFEVTEDYNGSKQEGFGLMEQTTWRGRRWSAA 196
Query: 123 E-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVI 181
L A + LIR +KIV + +A GV + E G + + A EVI
Sbjct: 197 SAYLRPALKRPNVELIRCFARKIVIENG----RATGV--EIERGGRIEVVKA---NREVI 247
Query: 182 LSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP-SNRPVEQ 240
+S + +P++L LSG+GP A L+++ I V +D +G+ + D+ M F S +PV
Sbjct: 248 VSASSFNSPKLLMLSGIGPAAHLKEMGIDVKVDRPGVGQNLQDH-MEFYFQQVSTKPV-- 304
Query: 241 SLIETVGITKLGV----YIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQ 296
SL + GV ++ G G S C + + G P AI
Sbjct: 305 SLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESC--AFLRSAPGVKQPDIQYHFLPVAIS 362
Query: 297 DYIRNKRTLPHEAFK--GGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKR 354
K F+ G+ L K S G +SL +++ +P + FNY SHP D ++
Sbjct: 363 --YDGKAAAKSHGFQVHVGYNLSK-----SRGNVSLRSSDPKADPVIRFNYMSHPEDWEK 415
Query: 355 CVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDT 414
VR+ +I K F Y + + E + + ++ F ++
Sbjct: 416 FRHCVRLTREIFGQKAFDLYRGPEIQPGEKV----------------QTDEEIDGFLREH 459
Query: 415 VITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGR 468
+ + +H G C +G VV E +V+G+D LRV D S + N +M G
Sbjct: 460 LESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGE 519
Query: 469 YMGVKIL-RQRLGKA 482
IL RQ L ++
Sbjct: 520 KSADHILGRQPLARS 534
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 136/511 (26%), Positives = 209/511 (40%), Gaps = 84/511 (16%)
Query: 9 QSASQYFISTDGVLNARARVLGGGSSINAGFYTRASS---QFIERMG---WDAKLVNESF 62
Q+A Q ++ + R + LGG SSINA Y R Q E+ G W K F
Sbjct: 62 QTAPQQHLNERSLFWPRGKTLGGSSSINAMVYIRGHEEDYQAWEQAGGEYWGWKRAFALF 121
Query: 63 PWVE------RQIVHQPKQEGWQKALRD------SLLDVGVSP---FNG-FTYDHIYGTK 106
+E + H E L+D S + G+ FNG F H G
Sbjct: 122 KKLEHNQRFDKSNYHGTDGELAVSDLKDLNPLSKSFVQAGMEAKISFNGDFNGAHQEGVG 181
Query: 107 IGGTIFDRFGRRHTAAE--LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN 164
+ + G+R ++A L + + ++ A K++F+ KAVGV + +N
Sbjct: 182 FY-QVTQKHGQRWSSARAFLHDVIDRPNLDIITEAHATKVLFEDR----KAVGVSYIQKN 236
Query: 165 GNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMAD 224
+Q + EVILS GA+ TPQ+L LSGVG AEL++ I++V D +GK + D
Sbjct: 237 MHQQ---VKTTDSGEVILSLGAVNTPQLLMLSGVGAAAELKEHGIALVHDLPEVGKNLQD 293
Query: 225 NPMNAVFVPSNRP----VEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIG 280
+ + +N V S I G+ L YI GF S AE G
Sbjct: 294 HLDITLMCAANSRTPIGVAFSFIPR-GLVGLFSYIFKRKGFLTSN----------VAESG 342
Query: 281 QLSTIPPKQRTPEA----IQDYIRNK-RTLPHEAFKGGFILEKI-ASPISTGELSLINTN 334
P++ P + Y+++ R + A G+ L P S G + L + N
Sbjct: 343 GFVKSSPERDRPNLQFHFLPTYLKDHGRKI---AVGYGYTLHICDLLPKSRGRIGLKSAN 399
Query: 335 VDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQ----SKHFLNYTQCDQKSVEAILNASV 390
D+P + NY S P D+K + G+++ I +KHF E + +V
Sbjct: 400 PMDDPLIDPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAKHF---------KREIVPGPAV 450
Query: 391 RANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK----VVSTEYKVLGIDRLRVV 446
++ +V D +S + TI+H G C +GK VV +V G+ +RVV
Sbjct: 451 TSDDEIVA----DIRSRAE-------TIYHPVGTCRMGKDPASVVDPCLQVRGLRNIRVV 499
Query: 447 DGSTYDESPGTNPQGTVLMMGRYMGVKILRQ 477
D S N +M+ I+R+
Sbjct: 500 DASIMPNLVAGNTNAPTIMIAENAAEIIVRK 530
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 205/495 (41%), Gaps = 76/495 (15%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIER---MGWDAKLVNESFPWVERQIVHQPKQEGWQKA 81
R +V+GG SSIN Y R S+ +R +G + P+ +R +EGW+
Sbjct: 79 RGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYYKRMEHSHGGEEGWRGT 138
Query: 82 LRDSLLDVGVSP-----FNGF-----------TYDHIYGTKIGGTIFDRF---GRRHTAA 122
D L V P F+ F T D+ + G + ++ GRR +AA
Sbjct: 139 --DGPLHVQRGPVKNPLFHAFIEAGKQAGFEVTEDYNGSKQEGFGLMEQTTWRGRRWSAA 196
Query: 123 E-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVI 181
L A + L+R +KIV + +A GV + E G + + A EVI
Sbjct: 197 SAYLRPALKRPNVELVRCFARKIVIENG----RATGV--EIERGGRTEVVRA---NREVI 247
Query: 182 LSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP-SNRPVEQ 240
+S + +P++L LSG+GP A L+++ I V D +G+ + D+ M F S +PV
Sbjct: 248 VSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADRPGVGQNLQDH-MEFYFQQVSTKPV-- 304
Query: 241 SLIETVGITKLGV----YIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQ 296
SL + GV ++ G G S C + + G P AI
Sbjct: 305 SLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESC--AFLRSAPGVKQPDIQYHFLPVAIS 362
Query: 297 DYIRNKRTLPHEAFK--GGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKR 354
K F+ G+ L K S G+++L +++ +P + FNY SHP D ++
Sbjct: 363 --YDGKAAAKSHGFQVHVGYNLSK-----SRGDVTLRSSDPKADPVIRFNYMSHPEDWEK 415
Query: 355 CVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDT 414
VR+ +I K F Y + E VR + + ++ F ++
Sbjct: 416 FRHCVRLTREIFGQKAFDLY-----RGPEIQPGEKVRTD-----------EEIDAFLREH 459
Query: 415 VITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGR 468
+ + +H G C +G VV E +V+G+D LRV D S + N +M G
Sbjct: 460 LESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHITYGNLNAPSIMTGE 519
Query: 469 YMGVKIL-RQRLGKA 482
IL +Q L ++
Sbjct: 520 KAADHILGKQPLARS 534
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 126/496 (25%), Positives = 202/496 (40%), Gaps = 78/496 (15%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIER---MGWDAKLVNESFPWVERQIVHQPKQEGWQKA 81
R +V+GG SSIN Y R ++ +R +G + P+ +R ++GW+
Sbjct: 79 RGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYFKRMEHSHGGEDGWRGT 138
Query: 82 LRDSLLDVGVSPFNGFTYDHIY---GTKIGGTIFDRF-----------------GRRHTA 121
D L V P + H + G + G + D + GRR +A
Sbjct: 139 --DGPLHVQRGPVKNPLF-HAFVEAGKQAGFEMTDDYNGSKQEGFGLMEQTTWRGRRWSA 195
Query: 122 AE-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEV 180
A L A + LIR +KIV + +A GV + E G + + A EV
Sbjct: 196 ASAYLKPALKRPNVQLIRCFARKIVIENG----RATGV--EIERGGRIEVVKA---NREV 246
Query: 181 ILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP-SNRPVE 239
I+S + +P++L LSG+GP A L+ L I V +D +G+ + D+ M F S +PV
Sbjct: 247 IVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDH-MEFYFQQISTKPV- 304
Query: 240 QSLIETVGITKLGV----YIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAI 295
SL + GV ++ SG G S C + + G P AI
Sbjct: 305 -SLYSWLPWFWQGVAGAQWLFFKSGLGISNQFEAC--AFLRSAPGVKQPDIQYHFLPVAI 361
Query: 296 QDYIRNKRTLPHEAFK--GGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLK 353
+ K F+ G+ L K S G ++L ++ +P + FNY SHP D +
Sbjct: 362 R--YDGKAAANTHGFQVHVGYNLSK-----SRGSVTLRASDPKADPVIRFNYMSHPEDWE 414
Query: 354 RCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKD 413
+ VR+ +I K F Y + + E + + ++ F ++
Sbjct: 415 KFRHCVRLTREIFGQKAFDQYRGPEIQPGERV----------------QTDEEIDAFLRE 458
Query: 414 TVITIWHYHGGCHVGK------VVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 467
+ + +H G C +G VV E +V+G+D LRV D S + N +M G
Sbjct: 459 HLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNLNAPSIMTG 518
Query: 468 RYMGVKIL-RQRLGKA 482
IL +Q L ++
Sbjct: 519 EKAADHILGKQPLARS 534
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 120/488 (24%), Positives = 196/488 (40%), Gaps = 77/488 (15%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIER---MGWDAKLVNESFPWVERQIVHQPKQEGWQKA 81
R +V+GG SSIN Y R ++ R +G + P+ +R +EGW+
Sbjct: 79 RGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVLPYFKRMEHSHGGEEGWRGT 138
Query: 82 LRDSLLDVGVSPFNGFTYDHIY---GTKIGGTIFDRF-----------------GRRHTA 121
D L V P + + H + G + G + D + GRR +A
Sbjct: 139 --DGPLHVQRGPVSNPLF-HAFIQAGAQAGFELTDDYNGSKQEGFGLMEQTIHNGRRWSA 195
Query: 122 AE-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEV 180
A L A + L+ +K++ + +AVGV + E + + A EV
Sbjct: 196 ANAYLKPALKRGNVTLVNGFARKVIIENG----RAVGV--EIERRGRVETVKA---NREV 246
Query: 181 ILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP-SNRPVE 239
I+S + +P++L LSG+GP A L+ + I V D +G + D+ M F S +PV
Sbjct: 247 IVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDH-MEFYFQQVSTKPV- 304
Query: 240 QSLIETVGITKLGV----YIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAI 295
SL + GV ++ + G G S C + + G P AI
Sbjct: 305 -SLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEAC--AFLRSAPGLKQPDIQYHFLPVAI 361
Query: 296 QDYIRNKRTLPHEAFKG--GFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLK 353
K F+ G+ L K S G ++L + + D+P + FNY SHP D +
Sbjct: 362 S--YDGKAAAKSHGFQAHVGYNLSK-----SRGNVTLRSADPHDDPVIRFNYMSHPEDWE 414
Query: 354 RCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKD 413
+ VR+ +I K F ++ + + E I + ++ F ++
Sbjct: 415 KFRHCVRLTREIFGQKAFDDFRGPEIQPGENI----------------ETDEQIDAFLRE 458
Query: 414 TVITIWHYHGGCHVGK------VVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMG 467
+ + +H G C +G VV E +V+G++ LRV D S + N G +M G
Sbjct: 459 HLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVTYGNLNGPSIMTG 518
Query: 468 RYMGVKIL 475
IL
Sbjct: 519 EKAADHIL 526
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 132/501 (26%), Positives = 203/501 (40%), Gaps = 85/501 (16%)
Query: 16 ISTDGVLNARARVLGGGSSINAGFYTRASSQFIERM------GWDAKLVNESFPWVERQI 69
I ++ R +VLGG SSIN Y R ++ + GW V P+ +R
Sbjct: 70 IGGRSLVTPRGKVLGGSSSINGMVYVRGHARDYDHWSESGARGWAYADV---LPYFKRME 126
Query: 70 VHQPKQEGW---------QKALRDSLLD---VGVSPFNGFTYDHIY-GTKIGG------T 110
QEGW Q+ RD+ L V GF Y G K G T
Sbjct: 127 NSSGGQEGWRGTNGPLYIQRGKRDNPLFHAFVEAGHEAGFEVTEDYNGEKQEGFGPMEQT 186
Query: 111 IFDRFGRRHTAAE-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQ 169
I + GRR +AA L A + L++ +KIV + GKR AVGV + E G +
Sbjct: 187 IHN--GRRWSAANAYLKPALKRPNVKLVKGLARKIVLE--GKR--AVGV--EIEAG---R 235
Query: 170 AFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNA 229
+F + EVI++ +I +P++L LSG+GP A+L++ I VV D +G+ + D+
Sbjct: 236 SFSTIRARREVIIAASSINSPKLLMLSGIGPAAQLKEHGIEVVADRPGVGQNLQDHLEVY 295
Query: 230 VFVPSNRPVE-QSLIETVGITKLGV-YIEASSGFG-----ESRDSIHCHHGIMSAEIGQL 282
+ +P+ S + K+G ++ +G G ES + G+ +I Q
Sbjct: 296 IQQECTQPITLYSKLNLFSKAKIGAEWLFFKTGDGATNHFESAAFLRSKAGVEYPDI-QY 354
Query: 283 STIPPKQRTPEAIQDYIRNKRTLPHEAFKG--GFILEKIASPISTGELSLINTNVDDNPS 340
+P R K F+ G + K S G ++L + N + P
Sbjct: 355 HFLPVAIR--------YDGKAAAQSHGFQAHVGPMRSK-----SRGSVTLRSANPREKPV 401
Query: 341 VSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKH 400
+ FNY SH D VR+ +I F Y A ++ H
Sbjct: 402 IKFNYMSHEDDWADFRHCVRLTREIFGQAAFNPYR-----------GAEIQPGA-----H 445
Query: 401 TNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTYDES 454
++ F K+ V + +H G C +G VV E +V+G++ LRV D S +
Sbjct: 446 VQSDDEIDNFIKEHVESAFHPCGTCKMGAVDDPMAVVDAECRVIGVEGLRVADSSIFPRI 505
Query: 455 PGTNPQGTVLMMGRYMGVKIL 475
N G +M+G IL
Sbjct: 506 TNGNLNGPSIMVGEKASDHIL 526
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 130/523 (24%), Positives = 204/523 (39%), Gaps = 99/523 (18%)
Query: 1 MTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERM------GWD 54
M D S + I ++ R +VLGG SSIN Y R + + GW
Sbjct: 55 METYDWGFSSEPEPHIGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWA 114
Query: 55 AKLVNESFPWVERQIVHQPKQEGW---------QKALRDSLLDVGVSPFNGFTYDHIYGT 105
V P+ +R Q QEGW Q+ RD+ L F+ F G
Sbjct: 115 YADV---LPYFKRMENSQGGQEGWRGTNGPLYVQRGKRDNPL------FHAFVEA---GH 162
Query: 106 KIGGTIFDRF-----------------GRRHTAAE-LLASANPQKITVLIRATVQKIVFD 147
+ G + D + GRR +AA L A + L++ +KIV +
Sbjct: 163 QAGFEVTDDYNGEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLE 222
Query: 148 TSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKL 207
GKR AVGV + E G A + EVI++ +I +P++L LSG+GP A L++
Sbjct: 223 --GKR--AVGV--EIEAGRTFSTIRA---RREVIIAASSINSPKLLMLSGIGPAAHLKEH 273
Query: 208 NISVVLDNAHIGKGMADNPMNAVFVPSNRPVE-QSLIETVGITKLGV-YIEASSGFG--- 262
I +V D +G+ + D+ + +P+ S + ++GV ++ +G G
Sbjct: 274 GIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGDGATN 333
Query: 263 --ESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG--GFILEK 318
ES + G+ +I Q +P R K F+ G + K
Sbjct: 334 HFESAAFVRSKAGVEYPDI-QYHFLPVAIR--------YDGKAAAQSHGFQAHVGPMRSK 384
Query: 319 IASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCD 378
S G ++L + N + P + FNY SH D VR+ +I F Y
Sbjct: 385 -----SRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYR--- 436
Query: 379 QKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVS 432
A ++ H ++ F ++ V + +H G C +G VV
Sbjct: 437 --------GAEIQPGA-----HVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVD 483
Query: 433 TEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 475
E +V+G++ LRV D S + N G +M+G IL
Sbjct: 484 PECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHIL 526
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 130/523 (24%), Positives = 204/523 (39%), Gaps = 99/523 (18%)
Query: 1 MTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERM------GWD 54
M D S + I ++ R +VLGG SSIN Y R + + GW
Sbjct: 55 METYDWGFSSEPEPHIGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWA 114
Query: 55 AKLVNESFPWVERQIVHQPKQEGW---------QKALRDSLLDVGVSPFNGFTYDHIYGT 105
V P+ +R Q QEGW Q+ RD+ L F+ F G
Sbjct: 115 YADV---LPYFKRMENSQGGQEGWRGTNGPLYVQRGKRDNPL------FHAFVEA---GH 162
Query: 106 KIGGTIFDRF-----------------GRRHTAAE-LLASANPQKITVLIRATVQKIVFD 147
+ G + D + GRR +AA L A + L++ +KIV +
Sbjct: 163 QAGFEVTDDYNGEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLE 222
Query: 148 TSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKL 207
GKR AVGV + E G A + EVI++ +I +P++L LSG+GP A L++
Sbjct: 223 --GKR--AVGV--EIEAGRTFSTIRA---RREVIIAASSINSPKLLMLSGIGPAAHLKEH 273
Query: 208 NISVVLDNAHIGKGMADNPMNAVFVPSNRPVE-QSLIETVGITKLGV-YIEASSGFG--- 262
I +V D +G+ + D+ + +P+ S + ++GV ++ +G G
Sbjct: 274 GIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGDGATN 333
Query: 263 --ESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG--GFILEK 318
ES + G+ +I Q +P R K F+ G + K
Sbjct: 334 HFESAAFVRSKAGVEYPDI-QYHFLPVAIR--------YDGKAAAQSHGFQAHVGPMRSK 384
Query: 319 IASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCD 378
S G ++L + N + P + FNY SH D VR+ +I F Y
Sbjct: 385 -----SRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYR--- 436
Query: 379 QKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVS 432
A ++ H ++ F ++ V + +H G C +G VV
Sbjct: 437 --------GAEIQPGA-----HVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVD 483
Query: 433 TEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 475
E +V+G++ LRV D S + N G +M+G IL
Sbjct: 484 PECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHIL 526
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 130/523 (24%), Positives = 204/523 (39%), Gaps = 99/523 (18%)
Query: 1 MTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERM------GWD 54
M D S + I ++ R +VLGG SSIN Y R + + GW
Sbjct: 55 METYDWGFSSEPEPHIGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWA 114
Query: 55 AKLVNESFPWVERQIVHQPKQEGW---------QKALRDSLLDVGVSPFNGFTYDHIYGT 105
V P+ +R Q QEGW Q+ RD+ L F+ F G
Sbjct: 115 YADV---LPYFKRMENSQGGQEGWRGTNGPLYVQRGKRDNPL------FHAFVEA---GH 162
Query: 106 KIGGTIFDRF-----------------GRRHTAAE-LLASANPQKITVLIRATVQKIVFD 147
+ G + D + GRR +AA L A + L++ +KIV +
Sbjct: 163 QAGFEVADDYNGEKQEGFGPMEQTIHNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLE 222
Query: 148 TSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKL 207
GKR AVGV + E G A + EVI++ +I +P++L LSG+GP A L++
Sbjct: 223 --GKR--AVGV--EIEAGRTFSTIRA---RREVIIAASSINSPKLLMLSGIGPAAHLKEH 273
Query: 208 NISVVLDNAHIGKGMADNPMNAVFVPSNRPVE-QSLIETVGITKLGV-YIEASSGFG--- 262
I +V D +G+ + D+ + +P+ S + ++GV ++ +G G
Sbjct: 274 GIDLVADRPGVGQNLQDHLEVYIQQECTQPITLYSELNLFSKARIGVEWLLFKTGDGATN 333
Query: 263 --ESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG--GFILEK 318
ES + G+ +I Q +P R K F+ G + K
Sbjct: 334 HFESAAFVRSKAGVEYPDI-QYHFLPVAIR--------YDGKAAAQSHGFQAHVGPMRSK 384
Query: 319 IASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCD 378
S G ++L + N + P + FNY SH D VR+ +I F Y
Sbjct: 385 -----SRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYR--- 436
Query: 379 QKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVS 432
A ++ H ++ F ++ V + +H G C +G VV
Sbjct: 437 --------GAEIQPGA-----HVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVD 483
Query: 433 TEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 475
E +V+G++ LRV D S + N G +M+G IL
Sbjct: 484 PECRVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHIL 526
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 134/516 (25%), Positives = 205/516 (39%), Gaps = 85/516 (16%)
Query: 1 MTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERM------GWD 54
M D S + I ++ R +VLGG SSIN Y R + + GW
Sbjct: 55 METYDWGFSSEPEPHIGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWA 114
Query: 55 AKLVNESFPWVERQIVHQPKQEGW---------QKALRDSLLD---VGVSPFNGF-TYDH 101
V P+ +R Q QEGW Q+ RD+ L V GF D
Sbjct: 115 YADV---LPYFKRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDD 171
Query: 102 IYGTKIGG------TIFDRFGRRHTAAE-LLASANPQKITVLIRATVQKIVFDTSGKRPK 154
G K G TI + GRR +AA L A + L++ +KIV + GKR
Sbjct: 172 YNGEKQEGFGPMEQTIHN--GRRWSAANAYLKPALKRPNVKLVKGFARKIVLE--GKR-- 225
Query: 155 AVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLD 214
AVGV + E G A + EVI++ +I +P++L LSG+GP A L++ I +V D
Sbjct: 226 AVGV--EIEAGRTFSTIRA---RREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVAD 280
Query: 215 NAHIGKGMADNPMNAVFVPSNRPVE-QSLIETVGITKLGV-YIEASSGFG-----ESRDS 267
+G+ + D+ + +P+ S + ++GV ++ +G G ES
Sbjct: 281 RPGVGQNLQDHLEVYIQQECTQPITLYSELNLFSKARIGVEWLLFKTGDGATNHFESAAF 340
Query: 268 IHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG--GFILEKIASPIST 325
+ G+ +I Q +P R K F+ G + K S
Sbjct: 341 VRSKAGVEYPDI-QYHFLPVAIR--------YDGKAAAQSHGFQAHVGPMRSK-----SR 386
Query: 326 GELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAI 385
G ++L + N + P + FNY SH D VR+ +I F Y
Sbjct: 387 GSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYR---------- 436
Query: 386 LNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLG 439
A ++ H ++ F ++ V + +H G C +G VV E +V+G
Sbjct: 437 -GAEIQPGA-----HVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIG 490
Query: 440 IDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 475
++ LRV D S + N G +M+G IL
Sbjct: 491 VEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHIL 526
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 134/516 (25%), Positives = 205/516 (39%), Gaps = 85/516 (16%)
Query: 1 MTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERM------GWD 54
M D S + I ++ R +VLGG SSIN Y R + + GW
Sbjct: 55 METYDWGFSSEPEPHIRGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWA 114
Query: 55 AKLVNESFPWVERQIVHQPKQEGW---------QKALRDSLLD---VGVSPFNGF-TYDH 101
V P+ +R Q QEGW Q+ RD+ L V GF D
Sbjct: 115 YADV---LPYFKRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEVTDD 171
Query: 102 IYGTKIGG------TIFDRFGRRHTAAE-LLASANPQKITVLIRATVQKIVFDTSGKRPK 154
G K G TI + GRR +AA L A + L++ +KIV + GKR
Sbjct: 172 YNGEKQEGFGPMEQTIHN--GRRWSAANAYLKPALKRPNVKLVKGFARKIVLE--GKR-- 225
Query: 155 AVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLD 214
AVGV + E G A + EVI++ +I +P++L LSG+GP A L++ I +V D
Sbjct: 226 AVGV--EIEAGRTFSTIRA---RREVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVAD 280
Query: 215 NAHIGKGMADNPMNAVFVPSNRPVE-QSLIETVGITKLGV-YIEASSGFG-----ESRDS 267
+G+ + D+ + +P+ S + ++GV ++ +G G ES
Sbjct: 281 RPGVGQNLQDHLEVYIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGDGATNHFESAAF 340
Query: 268 IHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG--GFILEKIASPIST 325
+ G+ +I Q +P R K F+ G + K S
Sbjct: 341 VRSKAGVEYPDI-QYHFLPVAIR--------YDGKAAAQSHGFQAHVGPMRSK-----SR 386
Query: 326 GELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAI 385
G ++L + N + P + FNY SH D VR+ +I F Y
Sbjct: 387 GSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFDPYR---------- 436
Query: 386 LNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLG 439
A ++ H ++ F ++ V + +H G C +G VV E +V+G
Sbjct: 437 -GAEIQPGA-----HVQTDDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIG 490
Query: 440 IDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 475
++ LRV D S + N G +M+G IL
Sbjct: 491 VEGLRVADSSIFPRITNGNLNGPSIMVGEKASGHIL 526
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 127/497 (25%), Positives = 198/497 (39%), Gaps = 80/497 (16%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIER---MGWDAKLVNESFPWVERQIVHQPKQEGWQKA 81
R +V+GG SSIN Y R ++ R +G + P+ +R +EGW+
Sbjct: 79 RGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSHGGEEGWRGT 138
Query: 82 LRDSLLDVGVSPFN--------------GF-TYDHIYGTKIGG------TIFDRFGRRHT 120
D L V F GF T D G+K G TIF GRR +
Sbjct: 139 --DGPLHVQRGGFTNPLFRAFIEAGKQAGFETTDDYNGSKQEGFGLMEQTIFS--GRRWS 194
Query: 121 AAE-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSE 179
AA L A +K ++ +KIV + +A GV + E G + + A E
Sbjct: 195 AANAYLKPALKRKNVGMVYGLARKIVIEDG----RATGV--EIERGGKVEVVKA---TRE 245
Query: 180 VILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP-SNRPV 238
VI+S + +P++L LSG+GP L + I+V D +G + D+ M F S +PV
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPGQHLNDMGIAVKADRPGVGANLQDH-MEFYFQQVSTKPV 304
Query: 239 EQSLIETVGITKLGV----YIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEA 294
SL + GV ++ + G G S C + + G P A
Sbjct: 305 --SLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEAC--AFLRSAPGLKQPDIQYHFLPVA 360
Query: 295 IQDYIRNKRTLPHEAFK--GGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDL 352
I K F+ G+ L K S G ++L + + P + FNY SHP D
Sbjct: 361 IS--YDGKAAAKSHGFQVHVGYNLSK-----SRGSVTLRSPDPKAEPVLRFNYMSHPEDW 413
Query: 353 KRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCK 412
++ VR+ +I F Y + + E + + ++ F +
Sbjct: 414 EKFRHCVRLTREIFGQTAFDAYRGPEIQPGEGV----------------QSDEQIDAFLR 457
Query: 413 DTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMM 466
+ + + +H G C +G VV + +V+G+D LRV D S + N G +M
Sbjct: 458 EHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMT 517
Query: 467 GRYMGVKIL-RQRLGKA 482
G IL +Q L ++
Sbjct: 518 GEKAADHILGKQPLARS 534
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 113/512 (22%), Positives = 199/512 (38%), Gaps = 101/512 (19%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIERMGWDAK---LVNESFPWVERQIVHQPKQE-GWQK 80
R +VLGG S +N Y R + + + D N+ P+ ++ + E G +
Sbjct: 143 RGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVLPFFKKSEDNLDLDEVGTEY 202
Query: 81 ALRDSLLDVGVSPFN--------------GFTYDHIYGTKIGGTIFD----RFGRRHTAA 122
+ LL VG P+N GF+ + G G + R G R+++A
Sbjct: 203 HAKGGLLPVGKFPYNPPLSYAILKAGEELGFSVHDLNGQNSTGFMIAQMTARNGIRYSSA 262
Query: 123 E--LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEV 180
L + + +L+ T KI+ K +GV D+ G+ + + K EV
Sbjct: 263 RAFLRPARMRNNLHILLNTTATKILIHPHTK--NVLGVEVSDQFGSTRKILV----KKEV 316
Query: 181 ILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADN--------------- 225
+LS GA+ +P +L LSGVGPK EL+++N+ V + +GK + ++
Sbjct: 317 VLSAGAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNHVTYFTNFFIDDADTA 376
Query: 226 PMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTI 285
P+N L+ GI+ + + R + + G G L++
Sbjct: 377 PLNWATAMEYLLFRDGLMSGTGISDVTAKLATRYADSPERPDLQLYFG------GYLASC 430
Query: 286 PPKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNY 345
+ E + + R+ + P + +P S G + L + + + P + NY
Sbjct: 431 ARTGQVGELLSNNSRSIQIFP-----------AVLNPRSRGFIGLRSADPLEPPRIVANY 479
Query: 346 FSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSV-----------EAILNASVRANV 394
+H D+K V+G++ ++ Q+ Y K+V +A +VR N
Sbjct: 480 LTHEQDVKTLVEGIKFVIRLSQTTPLKQYGMRLDKTVVKGCEAHAFGSDAYWECAVRQNT 539
Query: 395 NLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDG 448
P++ H G C +G VV+ E +V GI LRV+D
Sbjct: 540 G--PEN-------------------HQAGSCKMGPSHDPMAVVNHELRVHGIRGLRVMDT 578
Query: 449 STYDESPGTNPQGTVLMMGRYMGVKILRQRLG 480
S + N +M+ G +L++ G
Sbjct: 579 SIMPKVSSGNTHAPAVMIAE-KGAYLLKRAWG 609
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 125/497 (25%), Positives = 199/497 (40%), Gaps = 80/497 (16%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIER---MGWDAKLVNESFPWVERQIVHQPKQEGWQKA 81
R +V+GG SSIN Y R ++ R +G + P+ +R +EGW+
Sbjct: 79 RGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSHGGEEGWRGT 138
Query: 82 LRDSLLDVGVSPFN--------------GFTYDHIY-GTKIGG------TIFDRFGRRHT 120
D L V F GF Y G+K G TIF GRR +
Sbjct: 139 --DGPLHVQRGGFTNPLFRAFIEAGKQAGFETTEDYNGSKQEGFGLMEQTIFA--GRRWS 194
Query: 121 AAE-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSE 179
AA L A + ++ ++IV + +A GV + E G + + A E
Sbjct: 195 AANAYLKPALKRDNVGIVYGLARRIVIENG----RATGV--EIERGGRTEVVKA---NRE 245
Query: 180 VILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP-SNRPV 238
VI+S + +P++L LSG+GP L+++ I V D +G + D+ M F S +PV
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPAKHLKEMGIEVKADRPGVGANLQDH-MEFYFQQVSTKPV 304
Query: 239 EQSLIETVGITKLGV----YIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEA 294
SL + GV ++ + G G S C + + G P A
Sbjct: 305 --SLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEAC--AFLRSAPGLKQPDIQYHFLPVA 360
Query: 295 IQDYIRNKRTLPHEAFK--GGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDL 352
I K F+ G+ L K S G ++L + + +P + FNY SHP D
Sbjct: 361 IS--YDGKAAAKSHGFQVHVGYNLSK-----SRGSVTLRSPDPKADPVLRFNYMSHPEDW 413
Query: 353 KRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCK 412
++ VR+ +I K F Y + + E + + ++ F +
Sbjct: 414 EKFRHCVRLTREIFGQKAFDAYRGPEIQPGEGV----------------QSDEQIDSFLR 457
Query: 413 DTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMM 466
+ + + +H G C +G VV + +V+G+D LRV D S + N G +M
Sbjct: 458 EHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSIFPHVTYGNLNGPSIMT 517
Query: 467 GRYMGVKIL-RQRLGKA 482
G IL +Q L ++
Sbjct: 518 GEKAADHILGKQPLARS 534
>sp|A7N2P9|BETA_VIBHB Choline dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=betA PE=3 SV=1
Length = 569
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 129/503 (25%), Positives = 203/503 (40%), Gaps = 96/503 (19%)
Query: 25 RARVLGGGSSINAGFYTRA-SSQFIERMGWDAKLVN--ESFPWVERQIVHQPKQEGW--- 78
R +VLGG SSIN Y R + F E AK N P+ K E W
Sbjct: 81 RGKVLGGSSSINGMVYVRGHACDFDEWEAEGAKGWNYQACLPYFR-------KAETWTGG 133
Query: 79 QKALRDSLLDVGVSPFNGFTYDHIYGTKI--------------GGTIFDRFGRRH----- 119
R VG N + +Y I G + FG H
Sbjct: 134 ADEYRGGSGPVGTCNGNDMKLNPLYQAFIEAGKDAGYPETQDYNGYQQEGFGPMHMTVDK 193
Query: 120 -----TAAELLASANPQ-KITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLA 173
T+ L+ A + T++ T +I+ + GK KAVG+ F +++G Q F
Sbjct: 194 GVRASTSNAYLSRAKKRSNFTLMKGVTAHRILLE--GK--KAVGIEF-EQSGEIKQCF-- 246
Query: 174 GNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP 233
EV+ S G+IG+ Q+L+LSG+GPK L+K I V +GK + D+
Sbjct: 247 --ANKEVVSSAGSIGSVQLLQLSGIGPKTVLDKAGIEVKHTLEGVGKNLQDHLEVYFQYH 304
Query: 234 SNRPVEQSLIETVGITKLGV----YIEASSGFG-----ESRDSIHCHHGIMSAEIGQLST 284
+P+ +L +G+ G+ +I G G ES I G+ S I Q
Sbjct: 305 CKQPI--TLNSKLGLISKGLIGTEWILTRKGLGATNHFESCAFIRSREGLKSPNI-QFHF 361
Query: 285 IPPKQRTPEAIQDYIRNKRTLPHEAFKG-GFILE-KIASPISTGELSLINTNVDDNPSVS 342
+P R + R AF G GF + P S G + +++ N +D P +
Sbjct: 362 LPAAMRY---------DGRA----AFDGHGFQVHVGPNKPESRGSVEVVSANPNDKPKIE 408
Query: 343 FNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTN 402
FNY S D + D +R+ +I+ +Q +++A ++ +N+ T+
Sbjct: 409 FNYISTEQDKQDWRDCIRLTREIL-----------NQPAMDAFRGEEIQPGLNI----TS 453
Query: 403 DTKSLEQFCKDTVITIWHYHGGCHVGK------VVSTEYKVLGIDRLRVVDGSTYDESPG 456
D +++ ++ K V + +H C +G V++ +V GI+ LRVVD S + P
Sbjct: 454 D-EAIGEWVKQNVESAYHPSCSCKMGSNDDPMAVLNEACQVRGIEGLRVVDSSIFPTIPN 512
Query: 457 TNPQGTVLMMGRYMGVKILRQRL 479
N +M+ IL L
Sbjct: 513 GNLNAPTIMVAERAADMILGNTL 535
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 128/510 (25%), Positives = 208/510 (40%), Gaps = 84/510 (16%)
Query: 9 QSASQYFISTDGVLNARARVLGGGSSINAGFYTR-------ASSQFIERM-GWDAKLVNE 60
Q+A Q ++ + R + LGG SSINA Y R A Q R GW L E
Sbjct: 62 QTAPQQNLNGRSLFWPRGKTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGWYRAL--E 119
Query: 61 SFPWVE-RQIVHQPKQEG-----------WQKALRDSLLDVGVSP---FNGFTYDHIYGT 105
F +E Q + + G + L + + G+ FNG ++ Y
Sbjct: 120 LFKRLECNQRFDKSEHHGVDGELAVSDLKYINPLSKAFVQAGMEANINFNG-DFNGEYQD 178
Query: 106 KIG-GTIFDRFGRRHTAAE--LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD 162
+G + + G+R ++A L + + ++ A KI+F+ KAVGV +
Sbjct: 179 GVGFYQVTQKNGQRWSSARAFLHGVLSRPNLDIITDAHASKILFEDR----KAVGVSYIK 234
Query: 163 ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGM 222
+N + +G EV+LS GA+GTP +L LSGVG AEL++ +S+V D +GK +
Sbjct: 235 KNMHHQVKTTSG---GEVLLSLGAVGTPHLLMLSGVGAAAELKEHGVSLVHDLPEVGKNL 291
Query: 223 ADNPMNAVFVPSN--RPVEQSL-IETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEI 279
D+ + +N P+ +L G++ L Y+ GF S AE
Sbjct: 292 QDHLDITLMCAANSREPIGVALSFIPRGVSGLFSYVFKREGFLTSN----------VAES 341
Query: 280 GQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGF-----ILEKIASPISTGELSLINTN 334
G P + P ++ GG+ I + + P S G + L + N
Sbjct: 342 GGFVKSSPDRDRPNLQFHFLPTYLKDHGRKIAGGYGYTLHICDLL--PKSRGRIGLKSAN 399
Query: 335 VDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQ----SKHFLNYTQCDQKSVEAILNASV 390
P + NY S D+K + G+++ I+Q +KHF + E + +V
Sbjct: 400 PLQPPLIDPNYLSDHEDIKTMIAGIKIGRAILQAPSMAKHFKH---------EVVPGQAV 450
Query: 391 RANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK----VVSTEYKVLGIDRLRVV 446
+ + ++ D + + TI+H G C +GK VV K+ G+ +RVV
Sbjct: 451 KTDDEII----EDIRRRAE-------TIYHPVGTCRMGKDPASVVDPCLKIRGLANIRVV 499
Query: 447 DGSTYDESPGTNPQGTVLMMGRYMGVKILR 476
D S N +M+ I+R
Sbjct: 500 DASIMPHLVAGNTNAPTIMIAENAAEIIMR 529
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 114/514 (22%), Positives = 199/514 (38%), Gaps = 81/514 (15%)
Query: 1 MTLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERM------GWD 54
M+L D S + + + R +V+GG SSIN Y R ++ + GW
Sbjct: 56 MSLYDWGFASEPEPHLGGRVLATPRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWG 115
Query: 55 AKLVNESFPWVERQIVHQPKQEGW--------------QKALRDSLLDVGVSPFNGFTYD 100
V P+ +R + ++GW + L + ++ G T D
Sbjct: 116 FADV---LPYFKRMEDNDGGEDGWRGHGGPLHVQRGSRKNPLYGAFVEAGRQAGFELTDD 172
Query: 101 HIYGTKIGGTIFDRF---GRRHTAAE-LLASANPQKITVLIRATVQKIVFDTSGKRPKAV 156
+ + G ++ GRR +AA L A +K L++ ++++ + +A+
Sbjct: 173 YNGSKQEGFGPMEQTISGGRRWSAASAYLKPALKRKNVSLVKGFARRVIIENQ----RAI 228
Query: 157 GVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNA 216
GV + H+ + EVI++ +I +P++L LSG+GP L + I+VV D
Sbjct: 229 GVEIE-----AHKQIQVVKARREVIVAASSINSPKILMLSGIGPAEHLRENGIAVVADRP 283
Query: 217 HIGKGMADNPMNAVFVPSNRPVE-QSLIETVGITKLGV-YIEASSGFG-----ESRDSIH 269
+G+ + D+ + S +P+ S++ +G ++ SG G E+ +
Sbjct: 284 GVGRNLQDHMELYIQQESTKPITLNSVLNPFSKALIGAQWLFFKSGLGATNHFEAAAFVR 343
Query: 270 CHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG--GFILEKIASPISTGE 327
G+ +I Q IP R K F+ G + K S G
Sbjct: 344 SRAGVDYPDI-QYHFIPAAVR--------YDGKAAAKSHGFQAHVGPMRSK-----SRGS 389
Query: 328 LSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILN 387
++L + + P + FNY SHP D +R+ +I Q + +A
Sbjct: 390 VTLRSPDPKAKPVIRFNYMSHPDDWTEFRHCIRLTREIF-----------GQSAFDAFRG 438
Query: 388 ASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK------VVSTEYKVLGID 441
+ H L+ F +D + +H G C +G+ VV E +V+G+D
Sbjct: 439 QEISPG-----SHVQSDDDLDVFIRDHAESAYHPCGTCKMGRADDVTSVVDPECRVIGVD 493
Query: 442 RLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 475
LRV D S + N +M G IL
Sbjct: 494 GLRVADSSIFPRVTNGNLNAPSIMTGEKASDHIL 527
>sp|Q6LGH5|BETA_PHOPR Choline dehydrogenase OS=Photobacterium profundum GN=betA PE=3 SV=1
Length = 568
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 121/502 (24%), Positives = 201/502 (40%), Gaps = 102/502 (20%)
Query: 25 RARVLGGGSSINAGFYTRASS----QFIER--MGWDAKLVNESFPWVERQIVHQPKQEGW 78
R RVLGG SSIN Y R + +++E+ GW + E P+ R E W
Sbjct: 81 RGRVLGGSSSINGMVYVRGHACDYDEWVEQGAEGWSYQ---ECLPYFRRA-------ESW 130
Query: 79 ---QKALRDSLLDVGVSPFNGFTYDHIY------GTKIG--------GTIFDRFGRRH-- 119
+ R VG N + +Y G + G G + FG H
Sbjct: 131 IHGEDTYRGGDGPVGTCNGNDMELNPLYQAFIDAGQQAGYPKTDDYNGYQQEGFGPMHMT 190
Query: 120 ---------TAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQA 170
+ A L + +TV +K++ K +A+GV E G + Q+
Sbjct: 191 VDKGIRASTSNAYLRRAMKRSNLTVRKGVVTRKVLI----KNKQAIGVEI--EVGGKVQS 244
Query: 171 FLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAV 230
A +EV+LS G++G+PQ+L+LSG+GPKA LE+ I+V D +G+ + D+
Sbjct: 245 VYA---NTEVLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHDLPGVGENLQDHLEVYF 301
Query: 231 FVPSNRPVEQSLIETVGITKLGV----YIEASSGFG-----ESRDSIHCHHGIMSAEIGQ 281
++P+ +L +G+ G+ +I G G ES I G+ I Q
Sbjct: 302 QYACHQPI--TLNSKLGLISKGLIGTRWILQKDGLGATNHFESCAFIRSRAGLKWPNI-Q 358
Query: 282 LSTIPPKQRTPEAIQDYIRNKRTLPHEAFKG-GFILE-KIASPISTGELSLINTNVDDNP 339
+P R AF G GF + P S G + + + + P
Sbjct: 359 YHFLPAAMRYDG-------------QAAFDGHGFQVHVGPNKPQSRGRIWITSADPHQKP 405
Query: 340 SVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPK 399
++ FNY S D + D +R+ +I+ +Y + E A + ++
Sbjct: 406 NIEFNYISTEQDKQDWRDCIRLTREILAQPAMDDY-----RGEEIQPGADITSD------ 454
Query: 400 HTNDTKSLEQFCKDTVITIWHYHGGCHVGK------VVSTEYKVLGIDRLRVVDGSTYDE 453
++++ + + V + +H C +G V++ + +V GID LRV+D S +
Sbjct: 455 -----EAMDAWVRQNVESAYHPSCTCKMGSDNDPMTVLNKDCQVRGIDSLRVIDSSVFPT 509
Query: 454 SPGTNPQGTVLMMGRYMGVKIL 475
P N +M+ IL
Sbjct: 510 IPNGNLNAPTIMVAEKAADAIL 531
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 148/344 (43%), Gaps = 44/344 (12%)
Query: 116 GRRHTAAE--LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLA 173
GRR + A L + + ++ A +I+FD GKR V + E H
Sbjct: 198 GRRASTARGYLDQAKTRPNLEIVTHALADRILFD--GKRASGVAYLRGSERATAHA---- 251
Query: 174 GNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP 233
+ EV++ GAI +PQ+L+ SGVGP A L++L+I +VLD +G+ + D+ +
Sbjct: 252 ---RREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYE 308
Query: 234 SNRPVE-QSLIETVGITKLGV-YIEASSGFGESRDSIHCHHG--IMSAEIGQLSTIPPKQ 289
PV ++ K+G+ ++ +G G S H G I + + I
Sbjct: 309 CKEPVSLYPALKWWNQPKIGLEWMLNGTGLGASN---HFEAGGFIRTRDDDPWPNI-QYH 364
Query: 290 RTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHP 349
P AI + F+ + + SP S G + L + + +D+PS+ FNY +
Sbjct: 365 FLPVAIN--YNGSNAIEMHGFQAH--VGSMRSP-SRGRVKLRSRDPNDHPSILFNYMAEA 419
Query: 350 LDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQ 409
LD + D +R +I++ Y + E A R++ K L+
Sbjct: 420 LDWREFRDAIRATREIMRQPALDRY-----RGRELNPGADCRSD-----------KELDT 463
Query: 410 FCKDTVITIWHYHGGCHVG----KVVSTEYKVLGIDRLRVVDGS 449
F + T +H C +G VV E +V G+D LRVVD S
Sbjct: 464 FVRARAETAFHPSCSCKMGYDDMAVVDDEGRVHGLDGLRVVDAS 507
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 124/497 (24%), Positives = 200/497 (40%), Gaps = 80/497 (16%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIER---MGWDAKLVNESFPWVERQIVHQPKQEGWQKA 81
R +V+GG SSIN Y R ++ R +G + P+ +R +EGW+
Sbjct: 79 RGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAYADVLPYFKRMEHSHGGEEGWRGT 138
Query: 82 LRDSLLDVGVSPFN--------------GFTYDHIY-GTKIGG------TIFDRFGRRHT 120
D L V F GF Y G+K G TIF GRR +
Sbjct: 139 --DGPLHVQRGGFTNPLFRAFVEAGKQAGFETTEDYNGSKQEGFGLMEQTIFS--GRRWS 194
Query: 121 AAE-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSE 179
AA L A +K +I Q+IV + +A GV + E G + + A E
Sbjct: 195 AANAYLKPALKRKNVEIIYGFAQRIVIEDG----RATGV--EIERGGKIEVVKA---NRE 245
Query: 180 VILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP-SNRPV 238
VI+S + +P++L LSG+GP L+++ I V D +G + D+ M F S +PV
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPGEHLKEMGIEVKADRPGVGANLQDH-MEFYFQQVSTKPV 304
Query: 239 EQSLIETVGITKLGV----YIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEA 294
SL + GV ++ + G G S C + + G P A
Sbjct: 305 --SLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEAC--AFLRSAPGLKQPDIQYHFLPVA 360
Query: 295 IQDYIRNKRTLPHEAFK--GGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDL 352
I K F+ G+ L K S G ++L + + +P + FNY SH D
Sbjct: 361 IS--YDGKAAAKSHGFQVHVGYNLSK-----SRGSVTLRSPDPKADPVLRFNYMSHAEDW 413
Query: 353 KRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCK 412
++ VR+ ++ F +Y + + E++ + ++ F +
Sbjct: 414 EKFRHCVRLTRELFGQAAFDDYRGAEIQPGESV----------------QSDEEIDAFLR 457
Query: 413 DTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMM 466
+ + + +H G C +G VV + +V+G++ LRV D S + N G +M
Sbjct: 458 EHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVEALRVADSSIFPHVTYGNLNGPSIMT 517
Query: 467 GRYMGVKIL-RQRLGKA 482
G IL +Q L ++
Sbjct: 518 GEKAADHILGKQPLARS 534
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 123/502 (24%), Positives = 199/502 (39%), Gaps = 96/502 (19%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIERM------GWDAKLVNESFPWVERQIVHQPKQEGW 78
R +VLGG SSIN Y R + + GW+ + F E I + + G
Sbjct: 81 RGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAENWIDGEDEYRGG 140
Query: 79 Q-------------KALRDSLLDVG-------VSPFNGFT---YDHIYGTKIGGTIFDRF 115
L + +D G S +NG+ + ++ T G
Sbjct: 141 DGPLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSDYNGYQQEGFGPMHMTVKNGV----- 195
Query: 116 GRRHTAAELLASANPQKITVLIRATV-QKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAG 174
R T+ L+ A + LI+ V Q+I+ + +AVGV F + G F
Sbjct: 196 -RASTSNAYLSRAKKRSNFKLIKGVVVQRILLEEK----RAVGVEF-ELAGELRTCFA-- 247
Query: 175 NPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPS 234
K+EVI S G+IG+ Q+L+LSG+GPK LEK ++ V +G+ + D+
Sbjct: 248 --KNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVYHLPGVGQNLQDHLEVYFQYHC 305
Query: 235 NRPV---------EQSLIETVGI-TKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLST 284
+P+ + LI T I T+ G + A++ F ES I G+ I Q
Sbjct: 306 QKPITLNGKLDWFSKGLIGTEWILTRKG--LGATNHF-ESCAFIRSRAGLKWPNI-QYHF 361
Query: 285 IPPKQRTPEAIQDYIRNKRTLPHEAFKG-GFILE-KIASPISTGELSLINTNVDDNPSVS 342
+P R AF G GF + P S G + +++ N D P +
Sbjct: 362 LPAAMRYDG-------------QAAFDGHGFQVHVGPNKPESRGRVEIVSANPLDKPKIQ 408
Query: 343 FNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTN 402
FNY S D + D +R+ +I+ Q +++ ++ +N+
Sbjct: 409 FNYLSTERDRQDWRDCIRLTREILA-----------QPAMDEFRGEEIQPGINVA----- 452
Query: 403 DTKSLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTYDESPG 456
++Q+ K+ V + +H C +G V+ E +V GI LRVVD S + P
Sbjct: 453 TDAEIDQWVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPN 512
Query: 457 TNPQGTVLMMGRYMGVKILRQR 478
N +M+ IL ++
Sbjct: 513 GNLNAPTIMVAERAADLILHKQ 534
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 114/461 (24%), Positives = 188/461 (40%), Gaps = 74/461 (16%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIERM------GWDAKLVNESFPWVERQIVHQPKQEGW 78
R RV GG SS+NA Y R ++ R GWD P+ + H+ +
Sbjct: 126 RGRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWD---YAHCLPYFRKAQRHELGANMY 182
Query: 79 Q--------------KALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFD---RFGRRHTA 121
+ L + L FT D + G D G+R +
Sbjct: 183 RGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTVHQGKRWST 242
Query: 122 AELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVI 181
A A +P +RA VQ +V + +AVGV + ++G +H+A+++ EVI
Sbjct: 243 A--CAYLHPVLSRPNLRAEVQTLVSRVLFEGTRAVGVEYI-KDGQRHKAYVS----REVI 295
Query: 182 LSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQS 241
LS GAI +PQ+L LSGVG +L KL+I VV +G+ + D+ V +P+
Sbjct: 296 LSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEVYVQQACTQPITLH 355
Query: 242 LIE------TVGITKLGVYI-EASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEA 294
+ +G+ L Y + ++ E+ I G+ +I Q +P +
Sbjct: 356 SAQKPLRKVCIGLEWLWSYTGDGATAHLETGGFIRSRPGVPHPDI-QFHFLPSQ------ 408
Query: 295 IQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKR 354
+ D+ ++ EA++ + S G L L + N D+P + NY S D++
Sbjct: 409 VIDH--GRKPTQQEAYQ---VHVGTMRATSVGWLKLRSANPRDHPVIHPNYLSTETDVED 463
Query: 355 CVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDT 414
VR++ +I + EA+ A R H K ++ F +
Sbjct: 464 FRQCVRLSREIF--------------AQEAL--APFRGKELQPGSHVQSDKEIDAFVRAK 507
Query: 415 VITIWHYHGGCHVGK------VVSTEYKVLGIDRLRVVDGS 449
+ +H C +G+ VV + KV+G++ LRVVD S
Sbjct: 508 ADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDAS 548
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 125/497 (25%), Positives = 195/497 (39%), Gaps = 80/497 (16%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIER---MGWDAKLVNESFPWVERQIVHQPKQEGWQKA 81
R +V+GG SSIN Y R ++ R +G + P+ +R +EGW+
Sbjct: 79 RGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAYADVLPYFKRMEHSHGGEEGWRGT 138
Query: 82 LRDSLLDVGVSPFN--------------GFTYDHIY-GTKIGG------TIFDRFGRRHT 120
D L V F GF Y G+K G TIF GRR +
Sbjct: 139 --DGPLHVQRGGFTNPLFQAFVEAGKQAGFETTEDYNGSKQEGFGLMEQTIFG--GRRWS 194
Query: 121 AAE-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSE 179
AA L A + ++ Q+IV + +A GV + NG E
Sbjct: 195 AANAYLKPALKRDNVKIVYGLAQRIVIEDG----RATGVEI-ERNGRIEVV----KANRE 245
Query: 180 VILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP-SNRPV 238
VI+S + +P++L LSG+GP L+ + I+V D +G + D+ M F S +PV
Sbjct: 246 VIVSASSFNSPKLLMLSGIGPGQHLQDMGIAVKADRPGVGANLQDH-MEFYFQQVSTKPV 304
Query: 239 EQSLIETVGITKLGV----YIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEA 294
SL + GV ++ + G G S C + + G P A
Sbjct: 305 --SLYSWLPWFWQGVAGAQWLLSRGGLGASNQFEAC--AFLRSAPGLKQPDIQYHFLPVA 360
Query: 295 IQDYIRNKRTLPHEAFK--GGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDL 352
I K F+ G+ L K S G +SL + + +P + FNY SH D
Sbjct: 361 IS--YDGKAAAKSHGFQVHVGYNLSK-----SRGSVSLRSADPKADPVLRFNYMSHAEDW 413
Query: 353 KRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCK 412
++ VR+ +I F +Y + + E + + ++ F +
Sbjct: 414 EKFRHCVRLTREIFGQSAFHDYRGPEIQPGEGV----------------QSDEEIDAFLR 457
Query: 413 DTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMM 466
+ + + +H G C +G VV + +V+GID LRV D S + N G +M
Sbjct: 458 EHLESAYHPCGTCRMGAKDDPMAVVDPQTRVIGIDGLRVADSSIFPHVTYGNLNGPSIMT 517
Query: 467 GRYMGVKIL-RQRLGKA 482
G IL +Q L ++
Sbjct: 518 GEKAADHILGKQPLARS 534
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 119/499 (23%), Positives = 194/499 (38%), Gaps = 90/499 (18%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIERM------GWDAKLVNESFPWVERQIVHQPKQEGW 78
R +VLGG SSIN Y R + + GW+ + F E I + + G
Sbjct: 81 RGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNYQACLPYFRRAENWIDGEDEYRGG 140
Query: 79 Q-------------KALRDSLLDVG-------VSPFNGFT---YDHIYGTKIGGTIFDRF 115
L + +D G S +NG+ + ++ T G
Sbjct: 141 DGPLSTCAGNKMTLNPLYRAFIDAGKEAGYPETSDYNGYQQEGFGPMHMTVKNGV----- 195
Query: 116 GRRHTAAELLASANPQKITVLIRATV-QKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAG 174
R T+ L+ A + LI+ V Q+I+ + +AVGV F + G F
Sbjct: 196 -RASTSNAYLSRAKKRSNFKLIKGVVVQRILLEEK----RAVGVEF-ELAGELRTCFA-- 247
Query: 175 NPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPS 234
K+EVI S G+IG+ Q+L+LSG+GPK LEK ++ V +G+ + D+
Sbjct: 248 --KNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVTPVHHLPGVGQNLQDHLEVYFQYHC 305
Query: 235 NRPVE-QSLIETVGITKLGV-YIEASSGFG-----ESRDSIHCHHGIMSAEIGQLSTIPP 287
+P+ ++ +G +I G G ES I G+ I Q +P
Sbjct: 306 QKPITLNGKLDWFSKGLIGAEWILTRKGLGATNHFESCAFIRSRAGLKWPNI-QYHFLPA 364
Query: 288 KQRTPEAIQDYIRNKRTLPHEAFKG-GFILE-KIASPISTGELSLINTNVDDNPSVSFNY 345
R AF G GF + P S G + +++ N D P + FNY
Sbjct: 365 AMRYDG-------------QAAFDGHGFQVHVGPNKPESRGRVEIVSANPSDKPKIQFNY 411
Query: 346 FSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTK 405
S D + D +R+ +I+ Q +++ ++ +N+
Sbjct: 412 LSTERDRQDWRDCIRLTREILA-----------QPAMDEFRGEEIQPGINVA-----TDA 455
Query: 406 SLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTYDESPGTNP 459
++Q+ K+ V + +H C +G V+ E +V GI LRVVD S + P N
Sbjct: 456 EIDQWVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNL 515
Query: 460 QGTVLMMGRYMGVKILRQR 478
+M+ IL ++
Sbjct: 516 NAPTIMVAERAADLILHKQ 534
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 126/505 (24%), Positives = 208/505 (41%), Gaps = 91/505 (18%)
Query: 15 FISTDGVLNARARVLGGGSSINAGFYTRASS----QFIERMGWDAKLVNESFPWVERQ-- 68
F++ + R + LGG S IN Y R ++ + ER G + + P+ +
Sbjct: 74 FMNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDGWAERKGLENWTYLDCLPYFRKAET 133
Query: 69 -------------IVHQPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRF 115
VH + L +++++ GV T D + G DR
Sbjct: 134 RDAGANDYHGGDGPVHVTTSKRGVNPLFEAMVEAGVQAGYPRTDDLNGYQQEGFGPMDRT 193
Query: 116 ----GRR-HTAAELLASANPQ-KITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQ 169
GRR TA L A P+ +T++ AT +I+F SGKR A GV++ D Q
Sbjct: 194 VTANGRRASTARGYLDQARPRPNLTIVTYATTDRILF--SGKR--AQGVVYLD-----GQ 244
Query: 170 AFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNA 229
A + + + EV+L GAI +PQ+L+ SGVGP L L+I VVLD +G+ + D+
Sbjct: 245 AQITAHARREVLLCSGAIASPQILQRSGVGPGGWLRDLDIPVVLDLPGVGQNLQDHLEMY 304
Query: 230 VFVPSNRPVE--QSLI----ETVGITKL--GVYIEASS-----GFGESRDS---IHCHHG 273
+ PV +L+ +GI + G I AS+ GF +RD + +
Sbjct: 305 MQYECKEPVSLYPALLLRNQPAIGIEWMLKGTGIGASNHFEAGGFIRTRDDDPWPNIQYH 364
Query: 274 IMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINT 333
+ I T K Q ++ + R SP S G + L +
Sbjct: 365 FLPVAINYNGTNAIKM---HGFQAHVGSMR-----------------SP-SRGRVKLRSR 403
Query: 334 NVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRAN 393
+ ++PS+ FNY + LD + D +R+ +I+ ++ L+ + + S A L + +
Sbjct: 404 DPREHPSILFNYMAEALDWREFRDAIRITREII-AQPALDRFRGRELSPGAELQSDAQ-- 460
Query: 394 VNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG----KVVSTEYKVLGIDRLRVVDGS 449
++ F + T +H C +G VV E +V G++ LRVVD S
Sbjct: 461 -------------IDAFVRARAETAYHPSCSCAMGYDDMAVVDGEGRVHGLEGLRVVDAS 507
Query: 450 TYDESPGTNPQGTVLMMGRYMGVKI 474
N +M+ + +I
Sbjct: 508 IMPRITTGNLNAPTIMLAEKIADRI 532
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 122/495 (24%), Positives = 187/495 (37%), Gaps = 108/495 (21%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIERM------GWDAKLVNESFPWVERQIVHQPKQEGW 78
+ R+LGGGSSINA +TR +R GW + V + F E V G
Sbjct: 80 QGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWSFRDVQKYFIRSEGNAVFSGTWHGT 139
Query: 79 Q---------------KALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFD---RFGRRHT 120
+A S ++G+ P+N D ++ G I+ R RR +
Sbjct: 140 NGPLGVSNLAEPNPTSRAFVQSCQEMGL-PYNP---DFNGASQEGAGIYQMTIRNNRRCS 195
Query: 121 AA--ELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKS 178
A L + + +TV+ RA V KIVF+ G R V I NG + A
Sbjct: 196 TAVGYLRPALGRKNLTVVTRALVLKIVFN--GTRATGVQYI---ANGTLNTA----EASQ 246
Query: 179 EVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPV 238
E++++ GAIGTP+++ LSGVGP A L + I VV D +G+ + D+
Sbjct: 247 EIVVTAGAIGTPKLMMLSGVGPAAHLRENGIPVVQDLPGVGENLQDH------------- 293
Query: 239 EQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSA-----------------EIGQ 281
GV I A ES D H ++ A E G
Sbjct: 294 ------------FGVDIVAELKTDESFDKYRKLHWMLWAGLEYTMFRSGPVASNVVEGGA 341
Query: 282 LSTIPPKQRTPEAIQDYIRNK------RTLPHEAFKGGFILEKIASPISTGELSLINTNV 335
P P+ ++ ++P A G + + P S G + L + +
Sbjct: 342 FWYSDPSSGVPDLQFHFLAEAGAEAGVTSVPKGA-SGITLNSYVLRPKSRGTVRLRSADP 400
Query: 336 DDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVN 395
NP V N+ P DL+ +GVR L+Y Q S+E +R
Sbjct: 401 RVNPMVDPNFLGDPADLETSAEGVR-----------LSYEMFSQPSLE----KHIRKTCF 445
Query: 396 LVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK----VVSTEYKVLGIDRLRVVDGSTY 451
K + + ++ T +H C +G+ VV KV G++ +R+ D S
Sbjct: 446 FSGKQPT-MQMYRDYAREHGRTSYHPTCTCKMGRDDMSVVDPRLKVHGLEGIRICDSSVM 504
Query: 452 DESPGTNPQGTVLMM 466
G+N +M+
Sbjct: 505 PSLLGSNTNAATIMI 519
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 117/514 (22%), Positives = 200/514 (38%), Gaps = 105/514 (20%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIERM------GWDAKLVNESFPWVERQIVHQPKQEGW 78
R +VLGG S +N Y R + + + GW + V F E + + G
Sbjct: 143 RGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVLPFFKKSEDNL--ELDAVGT 200
Query: 79 QKALRDSLLDVGVSPFN--------------GFTYDHIYGTKIGGTIFD----RFGRRHT 120
+ + LL VG P+N GF+ + G G + R G R++
Sbjct: 201 EYHAKGGLLPVGKFPYNPPLSYALLKAGEEMGFSVQDLNGQNSTGFMIAQMTARNGIRYS 260
Query: 121 AAE--LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKS 178
+A L + + +L+ TV K++ K VGV D+ G+ + + K
Sbjct: 261 SARAFLRPARMRNNLHILLNTTVTKVLIHPGTK--NVVGVEVSDQFGSMRKILV----KK 314
Query: 179 EVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADN------------- 225
EVI+S GA+ +PQ+L LSGVGPK +L+K+N+ V +GK + ++
Sbjct: 315 EVIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHVAYFTNFFIDDAD 374
Query: 226 --PMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLS 283
P+N L+ GI+ + + + + + G G L+
Sbjct: 375 TAPLNWATAMEYLLFRDGLMSGTGISDVTAKMATRWADRPNLPDLQLYFG------GYLA 428
Query: 284 TIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSF 343
+ RT + + N R + I + +P S G ++L + + D P +
Sbjct: 429 SC---ARTGQVGELLSNNSRAIQ--------IFPAVLNPKSRGYITLRSADPLDPPRIFA 477
Query: 344 NYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSV-----------EAILNASVRA 392
NY + D+K V+G++ A ++ Q+ Y K+V +A +VR
Sbjct: 478 NYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKGCESHAFASDAYWECAVRQ 537
Query: 393 NVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVV 446
N P++ H G C +G VV+ E +V G+ LRV+
Sbjct: 538 NTG--PEN-------------------HQAGSCKMGPSHDPMAVVNHELRVHGVRGLRVM 576
Query: 447 DGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLG 480
D S + N +M+ G +L++ G
Sbjct: 577 DTSIMPKVTAGNTHAPAVMIAE-KGAYLLKRAWG 609
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 147/345 (42%), Gaps = 46/345 (13%)
Query: 116 GRRHTAAELL---ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFL 172
GRR + A A A P + ++ A +I+FD GKR V + E H
Sbjct: 198 GRRASTARGYLDQAKARPN-LEIVTHALADRILFD--GKRASGVTYLRGSERATAHA--- 251
Query: 173 AGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFV 232
+ EV++ GAI +PQ+L+ SGVGP A L+ L+I VVLD +G+ + D+ +
Sbjct: 252 ----RREVLVCSGAIASPQLLQRSGVGPGAWLKALDIPVVLDLPGVGQNLQDHLEMYIQY 307
Query: 233 PSNRPVE-QSLIETVGITKLGV-YIEASSGFGESRDSIHCHHG--IMSAEIGQLSTIPPK 288
PV ++ K+G+ ++ +G G S H G I + + I
Sbjct: 308 ECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGASN---HFEAGGFIRTRDDDPWPNI-QY 363
Query: 289 QRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSH 348
P AI + F+ + + SP S G + L + + +D+PS+ FNY +
Sbjct: 364 HFLPVAIN--YNGSNAIEMHGFQAH--VGSMRSP-SRGRVKLRSRDPNDHPSILFNYMAE 418
Query: 349 PLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLE 408
LD + D +R +I++ Y + E A + + K L+
Sbjct: 419 ALDWREFRDAIRATREIMRQPALDRY-----RGRELNPGADCKTD-----------KELD 462
Query: 409 QFCKDTVITIWHYHGGCHVG----KVVSTEYKVLGIDRLRVVDGS 449
F + T +H C +G VV E +V G+D LRVVD S
Sbjct: 463 AFVRARAETAFHPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDAS 507
>sp|B1K707|BETA_BURCC Choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3)
GN=betA PE=3 SV=1
Length = 566
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 152/358 (42%), Gaps = 43/358 (12%)
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ ++ A +I+FD GKR V + E H + EV++ GAI +PQ+
Sbjct: 217 LEIVTHALADRILFD--GKRASGVTYLRGSERATAHA-------RREVLVCSGAIASPQL 267
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVE-QSLIETVGITKL 251
L+ SGVGP A L++L+I VVLD +G+ + D+ + PV ++ K+
Sbjct: 268 LQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPKI 327
Query: 252 GV-YIEASSGFGESRDSIHCHHG--IMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHE 308
G+ ++ +G G S H G I + + I P AI +
Sbjct: 328 GLEWMLNGTGLGASN---HFEAGGFIRTRDDDPWPNI-QYHFLPVAIN--YNGSNAIEMH 381
Query: 309 AFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQS 368
F+ + + SP S G + L + + +D+PS+ FNY + LD + D +R +I++
Sbjct: 382 GFQAH--VGSMRSP-SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQ 438
Query: 369 KHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG 428
Y + E A +++ K L+ F + T +H C +G
Sbjct: 439 PALDRY-----RGRELNPGADCKSD-----------KELDAFVRARAETAFHPSCSCKMG 482
Query: 429 ----KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL-RQRLGK 481
VV E +V G+D LRVVD S N +M+ + KI RQ L +
Sbjct: 483 YDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKIRGRQPLAR 540
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 188/466 (40%), Gaps = 84/466 (18%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIERM------GWDAKLVNESFPWVERQIVHQ------ 72
R RV GG SS+NA Y R ++ R GWD P+ + H+
Sbjct: 129 RGRVWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWD---YAHCLPYFRKAQKHELGANMY 185
Query: 73 ----------------PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFG 116
P + + +A R + NGF + + TI G
Sbjct: 186 RGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPF-TEDMNGFQQEGFGWMDM--TIHQ--G 240
Query: 117 RRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNP 176
+R + A A P +RA VQ +V + +AVGV + ++G H+A+++
Sbjct: 241 KRWSTAS--AYLRPALSRPNLRAEVQTLVSRVLFEGTRAVGVEYI-KDGQSHKAYVS--- 294
Query: 177 KSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNR 236
EVILS GAI +PQ+L LSGVG +L+KL I VV +G+ + D+ + +
Sbjct: 295 -REVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQHACTQ 353
Query: 237 PVEQSLIE------TVGITKLGVYI-EASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQ 289
P+ + +G+ L + + ++ E+ I G+ +I Q +P +
Sbjct: 354 PITLHSAQKPLRKVCIGLEWLWRFTGDGATAHLETGGFIRSRPGVPHPDI-QFHFLPSQ- 411
Query: 290 RTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHP 349
+ D+ R + EA++ + S G L L +TN D+P ++ NY S
Sbjct: 412 -----VIDHGR--KPTQQEAYQ---VHVGTMRATSVGWLKLRSTNPQDHPMINPNYLSTE 461
Query: 350 LDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQ 409
D++ V++ +I + F A R H K ++
Sbjct: 462 TDVEDFRQCVKLTREIFAQEAF----------------APFRGKELQPGSHVQSDKEIDA 505
Query: 410 FCKDTVITIWHYHGGCHVGK------VVSTEYKVLGIDRLRVVDGS 449
F + + +H C +G+ VV + +V+G++ LRV+D S
Sbjct: 506 FVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDAS 551
>sp|A0B2F7|BETA_BURCH Choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424)
GN=betA PE=3 SV=1
Length = 566
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 42/325 (12%)
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ ++ A +I+FD GKR V + E H + EV++ GAI +PQ+
Sbjct: 217 LEIVTHALADRILFD--GKRASGVTYLRGSERATAHA-------RREVLVCSGAIASPQL 267
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVE-QSLIETVGITKL 251
L+ SGVGP A L++L+I VVLD +G+ + D+ + PV ++ K+
Sbjct: 268 LQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPKI 327
Query: 252 GV-YIEASSGFGESRDSIHCHHG--IMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHE 308
G+ ++ +G G S H G I + + I P AI +
Sbjct: 328 GLEWMLNGTGLGASN---HFEAGGFIRTRDDDPWPNI-QYHFLPVAIN--YNGSNAIEMH 381
Query: 309 AFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQS 368
F+ + + SP S G + L + + +D+PS+ FNY + LD + D +R +I++
Sbjct: 382 GFQAH--VGSMRSP-SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQ 438
Query: 369 KHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG 428
Y + E A +++ K L+ F + T +H C +G
Sbjct: 439 PALDRY-----RGRELNPGADCKSD-----------KELDAFVRARAETAFHPSCSCKMG 482
Query: 429 ----KVVSTEYKVLGIDRLRVVDGS 449
VV E +V G+D LRVVD S
Sbjct: 483 YDDMAVVDEEGRVHGLDGLRVVDAS 507
>sp|Q1BQE2|BETA_BURCA Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054)
GN=betA PE=3 SV=1
Length = 566
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 42/325 (12%)
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ ++ A +I+FD GKR V + E H + EV++ GAI +PQ+
Sbjct: 217 LEIVTHALADRILFD--GKRASGVTYLRGSERATAHA-------RREVLVCSGAIASPQL 267
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVE-QSLIETVGITKL 251
L+ SGVGP A L++L+I VVLD +G+ + D+ + PV ++ K+
Sbjct: 268 LQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPKI 327
Query: 252 GV-YIEASSGFGESRDSIHCHHG--IMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHE 308
G+ ++ +G G S H G I + + I P AI +
Sbjct: 328 GLEWMLNGTGLGASN---HFEAGGFIRTRDDDPWPNI-QYHFLPVAIN--YNGSNAIEMH 381
Query: 309 AFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQS 368
F+ + + SP S G + L + + +D+PS+ FNY + LD + D +R +I++
Sbjct: 382 GFQAH--VGSMRSP-SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQ 438
Query: 369 KHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG 428
Y + E A +++ K L+ F + T +H C +G
Sbjct: 439 PALDRY-----RGRELNPGADCKSD-----------KELDAFVRARAETAFHPSCSCKMG 482
Query: 429 ----KVVSTEYKVLGIDRLRVVDGS 449
VV E +V G+D LRVVD S
Sbjct: 483 YDDMAVVDEEGRVHGLDGLRVVDAS 507
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 165/388 (42%), Gaps = 74/388 (19%)
Query: 116 GRR-HTAAELLASANPQK-ITVLIRATVQKIVFDTSGKRPKAVGV-IFKDENGNQHQAFL 172
GRR TA L A +K +T++ A +I+FD GKR AVGV FK E+ +A
Sbjct: 195 GRRASTARGYLDQAKSRKNLTIVTHALTDRILFD--GKR--AVGVAYFKGESAQTAKA-- 248
Query: 173 AGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFV 232
+ EV+L GAI +PQ+L+ SGVGPK L++L+ISVV D +G+ + D+ +
Sbjct: 249 ----RREVLLCAGAIASPQILQRSGVGPKDLLQRLDISVVHDLPGVGENLQDHLEMYLQY 304
Query: 233 PSNRPVE---------------QSLIETVGITKLGVYIEASSGFGESRDSI---HCHHGI 274
PV + L GI + + GF SRD + +
Sbjct: 305 ACKEPVSLYPALQWFNQPKIGAEWLFNGTGIGASNQF--EAGGFIRSRDEFTWPNIQYHF 362
Query: 275 MSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTN 334
+ I + K+ Q ++ + R+L S G + + + +
Sbjct: 363 LPVAINYNGSNAVKE---HGFQAHVGSMRSL------------------SRGRVQVRSKD 401
Query: 335 VDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANV 394
++PS+ FNY S D + D +R+ +I+ Y + E +V+ +
Sbjct: 402 AREHPSILFNYMSTEQDWQEFRDAIRITREIMAQPALDKY-----RGREISPGLAVQTD- 455
Query: 395 NLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK----VVSTEYKVLGIDRLRVVDGST 450
+ L++F + T +H C +G+ VV + V G++ LRVVD S
Sbjct: 456 ----------EELDEFIRTHAETAFHPSCSCKMGEDDMSVVDGQGCVHGMEGLRVVDASI 505
Query: 451 YDESPGTNPQGTVLMMGRYMGVKILRQR 478
+ N T +M+ + +I R++
Sbjct: 506 MPQIITGNLNATTIMIAEKIADRIRRRQ 533
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 117/472 (24%), Positives = 189/472 (40%), Gaps = 96/472 (20%)
Query: 25 RARVLGGGSSINAGFYTRASSQFIERM------GWDAKLVNESFPWVERQIVHQPKQEGW 78
R RV GG SS+NA Y R ++ ER GWD P+ + H+ +
Sbjct: 124 RGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWD---YAHCLPYFRKAQGHELGASRY 180
Query: 79 QKA--------------LRDSLLDVG-------VSPFNGFTYDHIYGTKIGGTIFDRFGR 117
+ A L + L+ NGF + + TI + G+
Sbjct: 181 RGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDM--TIHE--GK 236
Query: 118 RHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPK 177
R +AA A +P ++A + +V + +AVGV + +NG H+A+ +
Sbjct: 237 RWSAA--CAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYV-KNGQSHRAYAS---- 289
Query: 178 SEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRP 237
EVILS GAI +PQ+L LSG+G +L+KL I VV +G+ + D+ + RP
Sbjct: 290 KEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRP 349
Query: 238 VEQSLIE------TVGITKLGVYI-EASSGFGESRDSIHCHHGIMSAEIGQLSTIPPK-- 288
+ + +G+ L + E ++ E+ I G+ +I Q +P +
Sbjct: 350 ITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDI-QFHFLPSQVI 408
Query: 289 --QRTP---EAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSF 343
R P EA Q ++ R S G L L + N D+P +
Sbjct: 409 DHGRVPTQQEAYQVHVGPMRG------------------TSVGWLKLRSANPQDHPVIQP 450
Query: 344 NYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTND 403
NY S D ++ R+ K+ + + Q EA+ A R H
Sbjct: 451 NYLSTETD----IEDFRLCVKLTREI----FAQ------EAL--APFRGKELQPGSHIQS 494
Query: 404 TKSLEQFCKDTVITIWHYHGGCHVGK------VVSTEYKVLGIDRLRVVDGS 449
K ++ F + + +H C +G+ VV + +VLG++ LRVVD S
Sbjct: 495 DKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDAS 546
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/375 (24%), Positives = 157/375 (41%), Gaps = 54/375 (14%)
Query: 116 GRRHTAAE--LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLA 173
GRR + A L + +T++ AT +I+FD GKR V + GN + A A
Sbjct: 197 GRRASTARGYLDQARERPNLTIVTHATTDRILFD--GKRASGVSYLI----GNANDATEA 250
Query: 174 GNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP 233
+ EV+L GAI +PQ+L+ SGVGP A L +L+I++V + +G+ + D+ +
Sbjct: 251 -RARREVLLCAGAIASPQILQRSGVGPAALLRELDIALVHELPGVGQNLQDHLEMYLQYA 309
Query: 234 SNRPVE----QSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQ 289
+PV L+ GI ++ +G G S E G P+
Sbjct: 310 CTQPVSLYPALKLLNQPGIGAQWLF--TGNGIGASN----------QFEAGGFIRTRPEF 357
Query: 290 RTPEAIQDYI------RNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSF 343
P ++ + F+ + + SP S G + L + + +PS+ F
Sbjct: 358 AWPNIQFHFLPVAINYNGSNAVNEHGFQAH--VGSMRSP-SRGRIQLKSKDPRQHPSILF 414
Query: 344 NYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTND 403
NY SH D + D +R+ +I+ Q ++++ + ++
Sbjct: 415 NYMSHEQDWQEFRDAIRITREIMA-----------QPALDSYRGREISPGID-----CQS 458
Query: 404 TKSLEQFCKDTVITIWHYHGGCHVGK----VVSTEYKVLGIDRLRVVDGSTYDESPGTNP 459
L+ F ++ T +H C +G+ VV + +V G+ LRVVD S E N
Sbjct: 459 DAELDAFIREHAETAFHPSCSCKMGEDDMAVVDGQGRVHGVQGLRVVDASIMPEIITGNL 518
Query: 460 QGTVLMMGRYMGVKI 474
T +MM + +I
Sbjct: 519 NATTIMMAEKIADRI 533
>sp|Q39A44|BETA_BURS3 Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3
SV=1
Length = 566
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 139/324 (42%), Gaps = 40/324 (12%)
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+ ++ A +I+FD GKR V + E H + EV++ GAI +PQ+
Sbjct: 217 LEIVTHALADRILFD--GKRASGVTYLRGSERATAHA-------RREVLVCSGAIASPQL 267
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVE-QSLIETVGITKL 251
L+ SGVGP A L++L+I VVLD +G+ + D+ + PV ++ K+
Sbjct: 268 LQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPKI 327
Query: 252 GV-YIEASSGFGESRDSIHCHH-GIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEA 309
G+ ++ +G G S H G + L P AI +
Sbjct: 328 GLEWMLNGTGLGASN---HFEAGGFIRTRDDDLWPNIQYHFLPVAIN--YNGSNAIEMHG 382
Query: 310 FKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSK 369
F+ + + SP S G + L + + +D+PS+ FNY + LD + D +R +I++
Sbjct: 383 FQAH--VGSMRSP-SRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDAIRATREIMRQP 439
Query: 370 HFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG- 428
Y + E A +++ K L+ F + T +H C +G
Sbjct: 440 ALDRY-----RGRELNPGADCKSD-----------KELDAFVRARAETAFHPSCSCKMGY 483
Query: 429 ---KVVSTEYKVLGIDRLRVVDGS 449
VV E +V G++ LRVVD S
Sbjct: 484 DDMAVVDEEGRVHGLEGLRVVDAS 507
>sp|B1Z034|BETA_BURA4 Choline dehydrogenase OS=Burkholderia ambifaria (strain MC40-6)
GN=betA PE=3 SV=1
Length = 566
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 159/377 (42%), Gaps = 45/377 (11%)
Query: 116 GRRHTAAE--LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLA 173
GRR + A L + + ++ A +I+FD GKR V + E N H
Sbjct: 198 GRRASTARGYLDQAKGRPNLEIVTHALADRILFD--GKRASGVTYLRGSERANAHA---- 251
Query: 174 GNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP 233
+ EV++ GAI +PQ+L+ SGVGP A L++L+I +VLD +G+ + D+ +
Sbjct: 252 ---RREVLVCSGAIASPQLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYE 308
Query: 234 SNRPVE-QSLIETVGITKLGV-YIEASSGFGESRDSIHCHHG--IMSAEIGQLSTIPPKQ 289
PV ++ K+G+ ++ +G G S H G I + + I
Sbjct: 309 CKEPVSLYPALKWWNQPKIGLEWMLNGTGLGASN---HFEAGGFIRTRDDDPWPNI-QYH 364
Query: 290 RTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHP 349
P AI + F+ + + SP S G + L + + + +PS+ FNY +
Sbjct: 365 FLPVAIN--YNGSNAIEMHGFQAH--VGSMRSP-SRGRVKLRSRDPNAHPSILFNYMAEA 419
Query: 350 LDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQ 409
LD + D +R +I++ Y + E A +++ K L+
Sbjct: 420 LDWREFRDAIRATREIMRQPALDRY-----RGRELNPGADCKSD-----------KELDT 463
Query: 410 FCKDTVITIWHYHGGCHVG----KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLM 465
F + T +H C +G VV E +V G++ LRVVD S N +M
Sbjct: 464 FVRSRAETAFHPSCSCKMGYDDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIM 523
Query: 466 MGRYMGVKIL-RQRLGK 481
+ + KI RQ L +
Sbjct: 524 IAEKIADKIRGRQPLAR 540
>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48)
GN=betA PE=3 SV=1
Length = 565
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 159/379 (41%), Gaps = 62/379 (16%)
Query: 116 GRRHTAAE--LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLA 173
GRR + A L + +T++ A +++FD GKR AVGV + + + +
Sbjct: 197 GRRSSTARGYLDQAKKRPNLTIVTHALSDRVLFD--GKR--AVGVTYLVGDSEER---VE 249
Query: 174 GNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVP 233
+ EVI+S GAI +PQ+L+ SGVGP+A LE L+I VV D +G+ + D+ +
Sbjct: 250 ARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELYLQYA 309
Query: 234 SNRPVE--QSLI----ETVGITKL--GVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTI 285
+PV SL+ +G L G I AS+ F E G
Sbjct: 310 CTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGASNQF----------------EAGGFIRT 353
Query: 286 PPKQRTPEAIQDYI------RNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNP 339
P+ + P ++ + F+ + + SP + G + + + +P
Sbjct: 354 RPEFKWPNIQYHFLPVAINYNGSNGVKEHGFQAH--MGSMRSP-ARGRIQAKSKDPRQHP 410
Query: 340 SVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPK 399
S+ FNY S D + DG+R+ +I+ Q +++A +
Sbjct: 411 SILFNYMSTEQDWQEFRDGIRLTREIMA-----------QPALDAFRGREISPGA----- 454
Query: 400 HTNDTKSLEQFCKDTVITIWHYHGGCHVG----KVVSTEYKVLGIDRLRVVDGSTYDESP 455
H + L++F ++ T +H C +G VV E +V G+ LRVVD S
Sbjct: 455 HVQTDEELDKFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGMQGLRVVDASIMPLII 514
Query: 456 GTNPQGTVLMMGRYMGVKI 474
N T +M+ + KI
Sbjct: 515 TGNLNATTIMIAEKISDKI 533
>sp|A6VEI3|BETA_PSEA7 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain PA7)
GN=betA PE=3 SV=1
Length = 561
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 154/357 (43%), Gaps = 54/357 (15%)
Query: 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192
+T++ A +I+F SGKR A+GV + NG+ + + + EV++ GAI +PQ+
Sbjct: 216 LTIVTHALSDRILF--SGKR--AIGVSYLVGNGDNP---VTAHARREVLVCSGAIASPQL 268
Query: 193 LKLSGVGPKAELEKLNISVVLDNAHIGKGMADN---------PMNAVFVPSNRPVEQSLI 243
L+ SGVGP A L L+I VV D +G + D+ P+ + Q I
Sbjct: 269 LQRSGVGPAALLRDLDIPVVHDLPGVGANLQDHLELYLQYACKQPVSIYPATKWWNQPAI 328
Query: 244 ETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKR 303
+ LG + AS+ F E+ I I Q +P +Y +K
Sbjct: 329 GAQWLF-LGKGLGASNQF-EAGGFIRTREAFEWPNI-QFHFLP-------VAINYNGSKG 378
Query: 304 TLPHEAFKGGFI--LEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRM 361
H GF + + SP S G + L + + +PS+ FNY SH D + DG+R+
Sbjct: 379 VQEH-----GFQAHMGSMRSP-SRGRIHLKSRDPRQHPSILFNYMSHEQDWQEFRDGIRL 432
Query: 362 AAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHY 421
+I+ +Q +++ + VN+ L++F ++ T +H
Sbjct: 433 TREIM-----------NQPALDPYRGRELSPGVNV-----QSDAELDEFIRNHAETAFHP 476
Query: 422 HGGCHVGK----VVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKI 474
C +G VV + +V G++ LRVVD S N T +MM + +I
Sbjct: 477 SCSCKMGSDDMAVVDGQGRVHGMEGLRVVDASIMPLIITGNLNATTIMMAEKIADRI 533
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 99/388 (25%), Positives = 163/388 (42%), Gaps = 74/388 (19%)
Query: 116 GRR-HTAAELLASANPQK-ITVLIRATVQKIVFDTSGKRPKAVGV-IFKDENGNQHQAFL 172
GRR TA L A +K +T++ A KI+F+ GKR AVGV FK E+ QA
Sbjct: 195 GRRASTARGYLDQAKGRKNLTIVTHALTDKILFE--GKR--AVGVAYFKGESPQTVQA-- 248
Query: 173 AGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFV 232
+ EV+L GAI +PQ+L+ SGVGPK L+ L+I VV D +G+ + D+ +
Sbjct: 249 ----RREVLLCAGAIASPQILQRSGVGPKDLLQGLDIPVVHDLPGVGENLQDHLEMYLQY 304
Query: 233 PSNRPVE---------------QSLIETVGITKLGVYIEASSGFGESRDSI---HCHHGI 274
PV + L GI + + GF SRD + +
Sbjct: 305 ACKEPVSLYPALQWFNQPKIGAEWLFSGTGIGASNQF--EAGGFIRSRDEFAWPNIQYHF 362
Query: 275 MSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTN 334
+ I + K+ Q ++ + R+L S G + + + +
Sbjct: 363 LPVAINYNGSNAVKE---HGFQAHVGSMRSL------------------SRGRVQVRSKD 401
Query: 335 VDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANV 394
++PS+ FNY S D + D +R+ +I+ Y + E V+ +
Sbjct: 402 AREHPSILFNYMSTEQDWQEFRDAIRITREIMAQPALDKY-----RGREISPGLEVQTD- 455
Query: 395 NLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK----VVSTEYKVLGIDRLRVVDGST 450
+ L++F + T +H C +G+ VV + +V G++ LRVVD S
Sbjct: 456 ----------EELDEFIRTHAETAFHPSCSCKMGEDEMAVVDGQGRVHGMEGLRVVDASI 505
Query: 451 YDESPGTNPQGTVLMMGRYMGVKILRQR 478
+ N T +M+ + +I R++
Sbjct: 506 MPQIITGNLNATTIMIAEKIADRIRRRQ 533
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,901,602
Number of Sequences: 539616
Number of extensions: 7773856
Number of successful extensions: 19340
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 18833
Number of HSP's gapped (non-prelim): 387
length of query: 485
length of database: 191,569,459
effective HSP length: 121
effective length of query: 364
effective length of database: 126,275,923
effective search space: 45964435972
effective search space used: 45964435972
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)