Query 011442
Match_columns 485
No_of_seqs 245 out of 1266
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 01:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02785 Protein HOTHEAD 100.0 4.2E-88 9.1E-93 711.2 40.0 484 2-485 104-587 (587)
2 KOG1238 Glucose dehydrogenase/ 100.0 3.1E-87 6.6E-92 678.1 33.5 453 2-483 109-621 (623)
3 TIGR01810 betA choline dehydro 100.0 5E-75 1.1E-79 613.7 34.3 435 7-477 60-529 (532)
4 PRK02106 choline dehydrogenase 100.0 1.9E-74 4.2E-79 612.4 34.3 438 8-478 67-535 (560)
5 COG2303 BetA Choline dehydroge 100.0 1E-65 2.2E-70 538.6 29.9 435 6-477 64-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 1E-44 2.2E-49 374.8 27.0 399 23-477 111-542 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 7.7E-41 1.7E-45 328.5 11.4 211 6-226 57-295 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 1E-34 2.3E-39 253.9 11.2 136 322-470 1-144 (144)
9 PRK12835 3-ketosteroid-delta-1 96.2 0.013 2.9E-07 62.9 7.6 59 128-194 223-282 (584)
10 PRK07843 3-ketosteroid-delta-1 95.8 0.027 6E-07 60.3 8.0 59 128-195 218-276 (557)
11 PRK12837 3-ketosteroid-delta-1 95.8 0.029 6.4E-07 59.4 8.1 57 129-194 185-242 (513)
12 PRK12844 3-ketosteroid-delta-1 95.5 0.037 7.9E-07 59.3 7.8 56 127-191 217-272 (557)
13 PRK08274 tricarballylate dehyd 95.4 0.039 8.5E-07 57.8 7.4 65 127-200 140-204 (466)
14 PRK07121 hypothetical protein; 95.0 0.063 1.4E-06 56.6 7.5 59 127-193 186-244 (492)
15 PF00890 FAD_binding_2: FAD bi 94.8 0.1 2.2E-06 53.7 8.1 57 128-194 151-208 (417)
16 PRK12845 3-ketosteroid-delta-1 94.7 0.088 1.9E-06 56.4 7.5 55 128-191 227-281 (564)
17 PRK12839 hypothetical protein; 94.6 0.084 1.8E-06 56.7 7.3 57 127-191 223-279 (572)
18 PRK13977 myosin-cross-reactive 94.4 0.12 2.5E-06 54.7 7.6 60 127-189 235-294 (576)
19 KOG2404 Fumarate reductase, fl 94.1 0.063 1.4E-06 51.7 4.3 51 130-189 157-207 (477)
20 PRK06134 putative FAD-binding 94.0 0.15 3.2E-06 55.0 7.6 58 127-193 226-283 (581)
21 TIGR01813 flavo_cyto_c flavocy 93.9 0.14 3E-06 53.2 7.0 55 127-189 139-193 (439)
22 PRK12843 putative FAD-binding 93.8 0.15 3.2E-06 54.9 7.2 56 127-191 230-285 (578)
23 PRK06263 sdhA succinate dehydr 93.4 0.21 4.5E-06 53.4 7.3 54 128-189 144-198 (543)
24 PRK05675 sdhA succinate dehydr 93.2 0.24 5.3E-06 53.2 7.5 54 128-189 136-190 (570)
25 TIGR01811 sdhA_Bsu succinate d 92.9 0.29 6.3E-06 53.0 7.6 52 130-189 145-197 (603)
26 TIGR01816 sdhA_forward succina 92.9 0.28 6.2E-06 52.6 7.4 53 128-189 129-182 (565)
27 PRK07573 sdhA succinate dehydr 92.9 0.25 5.5E-06 53.8 7.1 53 128-189 180-233 (640)
28 PRK09078 sdhA succinate dehydr 92.7 0.29 6.3E-06 52.9 7.3 54 128-189 159-213 (598)
29 PF06039 Mqo: Malate:quinone o 92.5 0.61 1.3E-05 47.7 8.7 66 124-199 187-254 (488)
30 PRK06175 L-aspartate oxidase; 92.2 0.37 8.1E-06 49.9 7.1 51 129-189 140-190 (433)
31 PRK08958 sdhA succinate dehydr 92.2 0.42 9.1E-06 51.6 7.7 54 128-189 153-207 (588)
32 PLN02815 L-aspartate oxidase 92.1 0.34 7.3E-06 52.2 6.8 55 129-188 167-222 (594)
33 PRK06481 fumarate reductase fl 92.1 0.4 8.7E-06 50.7 7.3 60 127-195 199-259 (506)
34 PRK12842 putative succinate de 92.1 0.46 9.9E-06 51.2 7.8 58 128-194 224-281 (574)
35 PF01266 DAO: FAD dependent ox 91.8 0.3 6.5E-06 48.5 5.8 56 128-198 157-212 (358)
36 PTZ00139 Succinate dehydrogena 91.8 0.43 9.3E-06 51.8 7.2 54 128-189 176-230 (617)
37 PRK06452 sdhA succinate dehydr 91.7 0.46 1E-05 51.0 7.3 52 128-188 146-198 (566)
38 PLN00128 Succinate dehydrogena 91.4 0.48 1E-05 51.5 7.0 54 128-189 197-251 (635)
39 PTZ00306 NADH-dependent fumara 91.3 0.54 1.2E-05 54.9 7.8 57 130-191 559-623 (1167)
40 TIGR03377 glycerol3P_GlpA glyc 91.1 0.7 1.5E-05 49.1 7.9 62 127-198 137-199 (516)
41 PRK08275 putative oxidoreducta 91.0 0.51 1.1E-05 50.6 6.8 53 128-188 147-200 (554)
42 PRK07803 sdhA succinate dehydr 90.9 0.63 1.4E-05 50.6 7.5 49 132-189 165-214 (626)
43 PRK08626 fumarate reductase fl 90.5 0.63 1.4E-05 50.9 7.0 53 128-189 168-221 (657)
44 COG0029 NadB Aspartate oxidase 90.2 0.38 8.3E-06 49.3 4.5 52 129-188 145-196 (518)
45 PRK05945 sdhA succinate dehydr 89.8 0.92 2E-05 48.9 7.5 54 127-189 144-198 (575)
46 TIGR01812 sdhA_frdA_Gneg succi 89.8 0.76 1.6E-05 49.4 6.9 53 128-189 139-192 (566)
47 PRK08071 L-aspartate oxidase; 89.7 0.69 1.5E-05 49.0 6.4 50 131-189 142-191 (510)
48 PRK12834 putative FAD-binding 89.5 0.92 2E-05 48.6 7.2 56 130-194 164-234 (549)
49 PRK11101 glpA sn-glycerol-3-ph 89.5 1.1 2.3E-05 48.0 7.7 62 127-198 158-220 (546)
50 PRK07395 L-aspartate oxidase; 89.4 0.61 1.3E-05 49.9 5.7 53 129-189 146-198 (553)
51 PRK09077 L-aspartate oxidase; 89.2 0.94 2E-05 48.3 6.9 56 129-189 150-208 (536)
52 PRK08641 sdhA succinate dehydr 89.2 1 2.2E-05 48.7 7.2 51 131-189 150-201 (589)
53 PRK09231 fumarate reductase fl 88.8 1.2 2.6E-05 48.1 7.5 51 130-189 146-197 (582)
54 PRK08205 sdhA succinate dehydr 88.5 1.1 2.5E-05 48.2 7.1 57 128-189 150-207 (583)
55 PLN02464 glycerol-3-phosphate 88.5 1.4 3.1E-05 47.9 7.8 63 126-197 240-304 (627)
56 TIGR01176 fum_red_Fp fumarate 88.4 1.3 2.9E-05 47.6 7.5 52 129-189 144-196 (580)
57 PRK07057 sdhA succinate dehydr 88.4 1.1 2.5E-05 48.3 7.0 54 128-189 158-212 (591)
58 COG0579 Predicted dehydrogenas 88.1 1.7 3.6E-05 44.6 7.5 64 124-201 159-223 (429)
59 TIGR00551 nadB L-aspartate oxi 87.0 1.4 3.1E-05 46.4 6.6 50 130-189 141-190 (488)
60 PTZ00383 malate:quinone oxidor 86.6 2.1 4.5E-05 45.1 7.5 53 132-199 231-283 (497)
61 PRK06069 sdhA succinate dehydr 86.4 1.8 3.9E-05 46.7 7.1 51 129-188 149-200 (577)
62 PRK07512 L-aspartate oxidase; 85.9 1.3 2.8E-05 47.0 5.6 50 130-189 149-198 (513)
63 TIGR03378 glycerol3P_GlpB glyc 85.8 2.1 4.5E-05 43.8 6.8 57 129-196 274-330 (419)
64 PRK06854 adenylylsulfate reduc 85.7 2.1 4.6E-05 46.4 7.2 50 130-188 145-195 (608)
65 TIGR02485 CobZ_N-term precorri 84.2 2.4 5.2E-05 43.9 6.6 58 127-194 132-189 (432)
66 TIGR02061 aprA adenosine phosp 83.7 2.9 6.2E-05 45.3 7.0 52 131-188 139-191 (614)
67 TIGR01320 mal_quin_oxido malat 83.2 4.5 9.7E-05 42.6 8.1 64 126-199 186-250 (483)
68 PRK13800 putative oxidoreducta 83.2 3 6.5E-05 47.5 7.3 50 130-188 155-205 (897)
69 PRK07804 L-aspartate oxidase; 82.5 3.1 6.8E-05 44.4 6.8 54 128-189 154-211 (541)
70 PRK05257 malate:quinone oxidor 81.6 5.3 0.00012 42.1 7.9 59 131-199 197-256 (494)
71 PF13738 Pyr_redox_3: Pyridine 81.5 1.7 3.7E-05 39.4 3.8 60 124-197 87-147 (203)
72 COG0578 GlpA Glycerol-3-phosph 81.1 3.9 8.6E-05 43.0 6.6 76 128-214 174-253 (532)
73 PRK05329 anaerobic glycerol-3- 78.4 4.5 9.8E-05 41.7 6.0 54 128-192 269-322 (422)
74 PRK13339 malate:quinone oxidor 78.4 8.5 0.00018 40.6 8.2 79 111-199 173-257 (497)
75 TIGR02730 carot_isom carotene 78.1 4.3 9.4E-05 42.8 6.0 55 127-194 238-292 (493)
76 PF01134 GIDA: Glucose inhibit 77.9 5.4 0.00012 40.4 6.3 47 129-189 107-153 (392)
77 PRK04176 ribulose-1,5-biphosph 77.6 4.9 0.00011 38.4 5.7 53 126-186 112-171 (257)
78 COG2081 Predicted flavoprotein 74.7 12 0.00025 37.8 7.4 88 80-191 82-170 (408)
79 TIGR02733 desat_CrtD C-3',4' d 74.1 6.7 0.00014 41.3 6.1 56 129-193 243-299 (492)
80 TIGR02734 crtI_fam phytoene de 74.0 7.4 0.00016 41.1 6.5 55 128-195 229-283 (502)
81 TIGR02352 thiamin_ThiO glycine 73.2 5.6 0.00012 39.2 5.1 52 126-192 145-196 (337)
82 TIGR01373 soxB sarcosine oxida 71.2 9.9 0.00021 38.8 6.5 57 127-197 192-248 (407)
83 PRK11728 hydroxyglutarate oxid 70.4 14 0.0003 37.5 7.4 57 127-199 158-214 (393)
84 PF06100 Strep_67kDa_ant: Stre 70.0 16 0.00034 38.1 7.4 58 128-188 217-274 (500)
85 PRK13369 glycerol-3-phosphate 69.0 11 0.00024 39.8 6.5 57 127-194 164-220 (502)
86 PF12831 FAD_oxidored: FAD dep 68.9 1.6 3.4E-05 45.2 0.0 57 129-198 101-157 (428)
87 TIGR03862 flavo_PP4765 unchara 68.7 21 0.00046 36.1 8.0 76 124-216 92-167 (376)
88 TIGR02731 phytoene_desat phyto 68.5 10 0.00022 39.4 5.9 49 130-186 225-274 (453)
89 PF13434 K_oxygenase: L-lysine 68.3 10 0.00022 37.9 5.6 61 124-192 100-161 (341)
90 PRK06185 hypothetical protein; 67.1 17 0.00037 37.0 7.2 59 129-199 120-178 (407)
91 PRK00711 D-amino acid dehydrog 67.1 14 0.00031 37.7 6.7 53 127-194 210-262 (416)
92 PRK12266 glpD glycerol-3-phosp 66.9 14 0.0003 39.2 6.6 57 128-195 165-222 (508)
93 COG1252 Ndh NADH dehydrogenase 65.8 8.2 0.00018 39.4 4.4 48 430-480 281-333 (405)
94 PLN02661 Putative thiazole syn 65.3 15 0.00033 36.7 6.0 49 129-186 184-242 (357)
95 PRK07208 hypothetical protein; 64.1 16 0.00035 38.2 6.4 56 130-193 230-285 (479)
96 TIGR02732 zeta_caro_desat caro 63.7 15 0.00032 38.6 6.0 59 129-193 230-289 (474)
97 PLN02487 zeta-carotene desatur 62.0 15 0.00032 39.5 5.7 59 129-193 306-365 (569)
98 PRK12409 D-amino acid dehydrog 61.4 25 0.00055 35.8 7.2 58 126-194 205-263 (410)
99 PF03486 HI0933_like: HI0933-l 61.2 14 0.00031 37.8 5.2 78 124-216 115-192 (409)
100 COG3634 AhpF Alkyl hydroperoxi 60.4 24 0.00052 35.0 6.2 58 130-196 402-460 (520)
101 KOG4254 Phytoene desaturase [C 59.7 9.4 0.0002 39.1 3.4 56 126-194 272-327 (561)
102 PRK11259 solA N-methyltryptoph 57.7 23 0.00049 35.6 6.0 50 128-193 159-208 (376)
103 KOG2311 NAD/FAD-utilizing prot 57.5 9.5 0.00021 39.3 3.1 56 129-193 136-191 (679)
104 PRK05192 tRNA uridine 5-carbox 57.3 24 0.00051 38.1 6.2 46 129-188 112-157 (618)
105 TIGR01292 TRX_reduct thioredox 56.5 45 0.00097 31.9 7.8 56 131-196 190-246 (300)
106 TIGR01377 soxA_mon sarcosine o 56.3 30 0.00065 34.7 6.7 54 128-197 155-208 (380)
107 PRK15317 alkyl hydroperoxide r 55.6 39 0.00084 35.9 7.6 58 130-196 399-457 (517)
108 TIGR03197 MnmC_Cterm tRNA U-34 53.9 34 0.00073 34.6 6.6 50 127-192 144-193 (381)
109 KOG1238 Glucose dehydrogenase/ 53.8 5 0.00011 42.8 0.5 110 103-219 220-338 (623)
110 TIGR01372 soxA sarcosine oxida 53.4 33 0.00072 39.6 7.0 62 128-199 361-422 (985)
111 TIGR02734 crtI_fam phytoene de 52.2 27 0.00059 36.8 5.8 42 436-481 454-495 (502)
112 TIGR00292 thiazole biosynthesi 51.1 36 0.00079 32.4 5.9 62 127-195 109-178 (254)
113 COG1233 Phytoene dehydrogenase 50.6 26 0.00057 36.8 5.3 55 127-195 233-287 (487)
114 KOG0042 Glycerol-3-phosphate d 50.1 9.2 0.0002 40.0 1.7 59 128-194 234-293 (680)
115 PLN02985 squalene monooxygenas 49.7 49 0.0011 35.1 7.2 53 129-191 159-211 (514)
116 PRK08401 L-aspartate oxidase; 48.9 36 0.00077 35.6 5.9 48 127-189 129-176 (466)
117 PLN02172 flavin-containing mon 46.6 29 0.00063 36.2 4.8 65 124-198 116-183 (461)
118 TIGR00136 gidA glucose-inhibit 46.1 34 0.00074 36.9 5.2 53 129-194 108-160 (617)
119 TIGR03169 Nterm_to_SelD pyridi 45.7 33 0.00072 34.3 5.0 50 430-479 261-311 (364)
120 PRK06126 hypothetical protein; 44.9 61 0.0013 34.6 7.1 50 129-188 138-188 (545)
121 PRK10157 putative oxidoreducta 44.6 68 0.0015 33.1 7.2 55 128-198 118-172 (428)
122 PRK12810 gltD glutamate syntha 43.6 53 0.0012 34.3 6.3 60 130-198 341-411 (471)
123 PRK07121 hypothetical protein; 43.4 39 0.00085 35.5 5.3 56 422-477 424-490 (492)
124 PTZ00318 NADH dehydrogenase-li 43.3 40 0.00086 34.7 5.2 51 430-480 298-349 (424)
125 PRK12831 putative oxidoreducta 42.8 66 0.0014 33.6 6.8 57 129-193 329-401 (464)
126 TIGR02733 desat_CrtD C-3',4' d 42.3 45 0.00098 35.0 5.5 71 402-477 421-491 (492)
127 PRK10262 thioredoxin reductase 41.5 1.1E+02 0.0024 29.9 7.9 61 128-198 195-257 (321)
128 TIGR03140 AhpF alkyl hydropero 41.4 85 0.0018 33.3 7.4 56 131-195 401-457 (515)
129 KOG2495 NADH-dehydrogenase (ub 41.2 30 0.00065 35.3 3.6 45 426-476 345-390 (491)
130 COG1053 SdhA Succinate dehydro 37.3 33 0.00071 36.8 3.5 85 130-228 151-241 (562)
131 PRK07233 hypothetical protein; 37.3 55 0.0012 33.4 5.2 52 128-193 208-259 (434)
132 PF13807 GNVR: G-rich domain o 37.0 60 0.0013 24.7 4.1 34 438-471 36-69 (82)
133 PRK08274 tricarballylate dehyd 36.8 63 0.0014 33.7 5.5 56 422-477 394-460 (466)
134 TIGR01316 gltA glutamate synth 36.1 1E+02 0.0022 32.0 7.0 62 128-197 319-396 (449)
135 TIGR01350 lipoamide_DH dihydro 36.0 82 0.0018 32.7 6.3 51 129-191 222-272 (461)
136 KOG2853 Possible oxidoreductas 34.8 93 0.002 30.9 5.7 59 136-200 260-331 (509)
137 PF01593 Amino_oxidase: Flavin 34.3 80 0.0017 31.7 5.8 33 441-475 418-450 (450)
138 KOG2852 Possible oxidoreductas 33.9 53 0.0011 31.9 3.8 59 129-198 159-217 (380)
139 PRK12835 3-ketosteroid-delta-1 33.5 90 0.0019 33.8 6.2 56 425-480 506-572 (584)
140 PLN02612 phytoene desaturase 33.5 65 0.0014 34.6 5.1 45 130-186 320-364 (567)
141 TIGR01318 gltD_gamma_fam gluta 33.3 84 0.0018 32.8 5.8 61 130-198 332-409 (467)
142 PRK06183 mhpA 3-(3-hydroxyphen 32.9 1.3E+02 0.0028 32.0 7.3 53 130-192 126-178 (538)
143 PRK07818 dihydrolipoamide dehy 32.9 1.1E+02 0.0023 32.0 6.5 54 129-192 224-277 (466)
144 PRK07364 2-octaprenyl-6-methox 32.8 1E+02 0.0022 31.3 6.3 49 129-188 133-181 (415)
145 PRK04965 NADH:flavorubredoxin 32.2 1.2E+02 0.0025 30.6 6.5 58 128-199 193-250 (377)
146 PRK12843 putative FAD-binding 32.0 87 0.0019 33.8 5.8 54 425-478 508-572 (578)
147 PRK06327 dihydrolipoamide dehy 31.7 84 0.0018 32.9 5.5 55 129-193 235-289 (475)
148 PRK12844 3-ketosteroid-delta-1 31.6 77 0.0017 34.0 5.3 54 425-478 486-550 (557)
149 COG3573 Predicted oxidoreducta 31.1 1.2E+02 0.0027 30.0 5.9 59 129-196 164-236 (552)
150 PRK12839 hypothetical protein; 30.2 85 0.0018 33.9 5.3 50 427-476 506-566 (572)
151 CHL00051 rps12 ribosomal prote 29.1 37 0.0008 28.1 1.7 23 209-231 61-83 (123)
152 COG3380 Predicted NAD/FAD-depe 28.8 70 0.0015 30.8 3.7 53 131-196 116-168 (331)
153 PRK12845 3-ketosteroid-delta-1 28.6 92 0.002 33.5 5.2 47 430-476 507-563 (564)
154 TIGR02032 GG-red-SF geranylger 27.6 1.5E+02 0.0033 28.0 6.2 48 127-187 100-147 (295)
155 PRK01747 mnmC bifunctional tRN 27.4 1.4E+02 0.003 32.8 6.5 52 126-193 416-467 (662)
156 COG3486 IucD Lysine/ornithine 27.0 1.8E+02 0.0039 29.7 6.4 57 129-194 289-347 (436)
157 PF01494 FAD_binding_3: FAD bi 27.0 2.1E+02 0.0045 27.8 7.2 49 129-186 122-170 (356)
158 PRK07057 sdhA succinate dehydr 26.8 99 0.0021 33.5 5.1 53 425-477 359-425 (591)
159 PRK12809 putative oxidoreducta 26.7 1.2E+02 0.0027 33.1 5.9 51 130-188 501-567 (639)
160 PRK12769 putative oxidoreducta 26.4 1.2E+02 0.0027 33.2 5.8 63 128-198 516-595 (654)
161 PLN00128 Succinate dehydrogena 26.3 1.1E+02 0.0025 33.3 5.5 51 427-477 400-465 (635)
162 PRK12842 putative succinate de 25.7 1.3E+02 0.0029 32.3 5.9 51 430-480 509-569 (574)
163 PRK11445 putative oxidoreducta 25.7 2.1E+02 0.0045 28.5 6.9 56 124-190 104-159 (351)
164 PRK08244 hypothetical protein; 25.7 1.6E+02 0.0034 31.0 6.3 50 128-188 110-159 (493)
165 PRK08275 putative oxidoreducta 25.5 90 0.0019 33.5 4.5 56 417-476 346-402 (554)
166 COG0445 GidA Flavin-dependent 25.4 51 0.0011 34.9 2.4 70 129-211 112-193 (621)
167 PRK12770 putative glutamate sy 25.3 1.5E+02 0.0033 29.4 5.9 60 129-198 221-297 (352)
168 PRK11749 dihydropyrimidine deh 25.3 1.6E+02 0.0034 30.6 6.1 56 129-193 322-392 (457)
169 PRK10015 oxidoreductase; Provi 25.2 1.5E+02 0.0032 30.6 5.9 49 124-186 113-162 (429)
170 TIGR03329 Phn_aa_oxid putative 24.7 1.1E+02 0.0024 31.8 4.9 60 112-187 173-236 (460)
171 PRK08773 2-octaprenyl-3-methyl 24.4 1.8E+02 0.0039 29.3 6.3 56 128-199 123-178 (392)
172 TIGR01984 UbiH 2-polyprenyl-6- 24.3 1.9E+02 0.0041 28.9 6.4 43 131-187 119-161 (382)
173 PF13434 K_oxygenase: L-lysine 23.9 1.9E+02 0.0041 28.8 6.1 48 129-185 290-338 (341)
174 COG0644 FixC Dehydrogenases (f 23.9 1.4E+02 0.003 30.4 5.3 50 124-186 100-150 (396)
175 TIGR00981 rpsL_bact ribosomal 23.4 53 0.0011 27.2 1.7 22 210-231 62-83 (124)
176 PF07156 Prenylcys_lyase: Pren 23.2 1.2E+02 0.0026 30.7 4.6 49 129-185 136-184 (368)
177 PF00743 FMO-like: Flavin-bind 23.1 92 0.002 33.2 3.9 65 124-194 89-156 (531)
178 PRK08205 sdhA succinate dehydr 23.0 1.3E+02 0.0029 32.4 5.2 52 425-476 354-416 (583)
179 PRK14989 nitrite reductase sub 22.5 2E+02 0.0043 32.8 6.6 58 129-198 198-255 (847)
180 PRK05675 sdhA succinate dehydr 22.2 1.4E+02 0.0031 32.1 5.3 51 426-476 338-403 (570)
181 PRK05163 rpsL 30S ribosomal pr 22.1 55 0.0012 27.1 1.5 22 210-231 62-83 (124)
182 PRK09564 coenzyme A disulfide 22.1 2.3E+02 0.0051 29.1 6.7 57 128-199 201-257 (444)
183 TIGR03364 HpnW_proposed FAD de 22.0 1.5E+02 0.0033 29.4 5.1 42 131-192 159-200 (365)
184 PRK06134 putative FAD-binding 21.9 1.3E+02 0.0029 32.4 5.0 51 426-476 508-569 (581)
185 PRK08958 sdhA succinate dehydr 21.8 1.2E+02 0.0027 32.7 4.7 53 425-477 355-422 (588)
186 TIGR02053 MerA mercuric reduct 21.3 1.9E+02 0.0042 29.9 5.9 52 129-191 218-269 (463)
187 KOG1298 Squalene monooxygenase 21.2 79 0.0017 32.0 2.7 51 129-189 159-209 (509)
188 PF13454 NAD_binding_9: FAD-NA 21.1 2.1E+02 0.0046 24.6 5.3 43 130-186 112-155 (156)
189 PRK13512 coenzyme A disulfide 20.9 2.1E+02 0.0045 29.5 6.0 47 129-187 69-116 (438)
190 COG2509 Uncharacterized FAD-de 20.9 1.9E+02 0.0042 29.9 5.4 48 129-189 184-231 (486)
191 TIGR01816 sdhA_forward succina 20.8 1.3E+02 0.0029 32.2 4.7 51 426-476 330-394 (565)
192 PRK06416 dihydrolipoamide dehy 20.6 2.4E+02 0.0052 29.2 6.5 53 129-192 224-276 (462)
193 PRK06370 mercuric reductase; V 20.5 2.2E+02 0.0047 29.6 6.1 53 128-191 222-274 (463)
194 PRK06834 hypothetical protein; 20.4 2.4E+02 0.0051 29.7 6.3 47 128-188 110-156 (488)
195 PF10555 MraY_sig1: Phospho-N- 20.3 42 0.0009 16.2 0.3 9 423-431 3-11 (13)
196 PRK12771 putative glutamate sy 20.1 2.5E+02 0.0054 30.2 6.5 60 130-198 317-391 (564)
No 1
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=4.2e-88 Score=711.16 Aligned_cols=484 Identities=80% Similarity=1.279 Sum_probs=362.3
Q ss_pred CCCCCCCCCcccccccCCceeecCcccccchhhhcccccccCChhhhhcCCCChhhhccccccchhccccCCCchhhHHH
Q 011442 2 TLADTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMGWDAKLVNESFPWVERQIVHQPKQEGWQKA 81 (485)
Q Consensus 2 ~~~~~~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~~~gW~~~~l~~~~~~~e~~~~~~~~~~~~~~~ 81 (485)
++.+.++.+.||.+.+++++.++|||+|||||+||+|+|.|+++++|+..||+|+++++||+++|+.+...|...++...
T Consensus 104 ~~~d~~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 183 (587)
T PLN02785 104 GLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAA 183 (587)
T ss_pred cccccCCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHHHH
Confidence 34577888999999999999999999999999999999999999998888999999999999999876555667789999
Q ss_pred HHHHHHhCCCCCCCCCccCCCCceeeeeeEEcCCCccccHHHhhhhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEE
Q 011442 82 LRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFK 161 (485)
Q Consensus 82 ~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~R~sa~~~l~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~ 161 (485)
|.+++.++|++++|++..++..|...|.+++++.|.|++++.+++.++++||+|+++++|+||+|+++++..+|+||+|.
T Consensus 184 ~~~a~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~ 263 (587)
T PLN02785 184 LRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFK 263 (587)
T ss_pred HHHHHHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEE
Confidence 99999999998888776776666666767766789999999877777889999999999999999864333589999998
Q ss_pred eCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCccccccCccCCCceeeecCCCcccch
Q 011442 162 DENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQS 241 (485)
Q Consensus 162 ~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp~VG~nl~dH~~~~~~~~~~~~~~~~ 241 (485)
+.+|+.+++....+++||||||||+|+||+|||+|||||+++|+++||++++|+|+||+||||||...+.+..+.+....
T Consensus 264 ~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~ 343 (587)
T PLN02785 264 DENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQS 343 (587)
T ss_pred ECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhh
Confidence 76676665432223569999999999999999999999999999999999999999999999999988877765543211
Q ss_pred hHHhhcchhhhhHHHhcCCCCCCCCCccccccccccccccccCCCCCCCChHHHHHHhhhccCCCccccccceeeecccc
Q 011442 242 LIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIAS 321 (485)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (485)
..+..+....+.|.....++......+......+....+.+...++....++.+..++.....++...+..+.++..+++
T Consensus 344 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 423 (587)
T PLN02785 344 LIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAG 423 (587)
T ss_pred hHhhhhhhccccceecccccccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEEecC
Confidence 11111111111221111121111000000000111111111112222222222222221111111111222344566789
Q ss_pred cCceeEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhccccCCCCCCC
Q 011442 322 PISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHT 401 (485)
Q Consensus 322 P~srG~V~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 401 (485)
|.|||+|+|+|+||.+.|.|+++|+.+|.|++.++++++.+++++++.+++.+......+..++.+..+..|.+..|...
T Consensus 424 P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 503 (587)
T PLN02785 424 PISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHT 503 (587)
T ss_pred CCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999888776421000001111111111222334445
Q ss_pred CCHHHHHHHHHhhcccccccccccccCcccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 011442 402 NDTKSLEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481 (485)
Q Consensus 402 ~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~~~ 481 (485)
.+|++|++|+|+...+.||++|||+||+|||+++||||++|||||||||||.+|++||++|+||||||+|++|+++++++
T Consensus 504 ~~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~ 583 (587)
T PLN02785 504 NDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGR 583 (587)
T ss_pred CCHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 011442 482 AAGV 485 (485)
Q Consensus 482 ~~~~ 485 (485)
+++|
T Consensus 584 ~~~~ 587 (587)
T PLN02785 584 AAGV 587 (587)
T ss_pred hcCC
Confidence 8876
No 2
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=3.1e-87 Score=678.07 Aligned_cols=453 Identities=34% Similarity=0.514 Sum_probs=346.2
Q ss_pred CCCCCCCCCccccc----ccCCceeecCcccccchhhhcccccccCChhh---hh---cCCCChhhhccccccchhcccc
Q 011442 2 TLADTSPQSASQYF----ISTDGVLNARARVLGGGSSINAGFYTRASSQF---IE---RMGWDAKLVNESFPWVERQIVH 71 (485)
Q Consensus 2 ~~~~~~~~t~~q~~----~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~---~~---~~gW~~~~l~~~~~~~e~~~~~ 71 (485)
++.+.++.|+||+. ..++.+.|+|||+|||||+||+|+|.|+++.| |. +.||+|++++|||+|+|+...+
T Consensus 109 s~~dw~y~t~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~ 188 (623)
T KOG1238|consen 109 SLYDWSYHTEPSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVP 188 (623)
T ss_pred ccccccCcCccChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCC
Confidence 56778889999997 77889999999999999999999999999743 32 4679999999999999987544
Q ss_pred CCC------------------chhhHHHHHHHHHhCCCCCCCCCccCCCCceeeeeeE---EcCCCccccHHH-hhhhc-
Q 011442 72 QPK------------------QEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTI---FDRFGRRHTAAE-LLASA- 128 (485)
Q Consensus 72 ~~~------------------~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~---~~~~g~R~sa~~-~l~~~- 128 (485)
.++ ..+....|.++.+++|.. . .|.++....|..+ ..++|.|+|++. |+..+
T Consensus 189 ~~~~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~G~~-~----~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~ 263 (623)
T KOG1238|consen 189 DPELTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEIGGS-I----FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIR 263 (623)
T ss_pred CcccCcccccCCcceeccccccCchhhHhHHhHHhcCCC-c----cCCCCccccchhhhhccccCCEEEEehhhhhhhhh
Confidence 332 344567788888999853 1 2333333333322 237899999886 87653
Q ss_pred -CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhc
Q 011442 129 -NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKL 207 (485)
Q Consensus 129 -~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~ 207 (485)
.|+||++..++.|+||++|..+ ++|.||++....|+.++++ ++||||||||||+||||||+|||||+++|+++
T Consensus 264 ~~R~NL~~~~~~~vtrvl~D~~~--~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~ 337 (623)
T KOG1238|consen 264 LTRPNLHISRNAAVTRVLIDPAG--KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKL 337 (623)
T ss_pred ccCccccccccceEEEEEEcCCC--ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhc
Confidence 4899999999999999999754 6999999986337888888 57999999999999999999999999999999
Q ss_pred CCceeecCccccccCccCCCceeeecCCCcccchhHHhhcchhhhhHHHhcCCCCCCCCCcccccccccccccccc----
Q 011442 208 NISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLS---- 283 (485)
Q Consensus 208 GI~~v~dlp~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---- 283 (485)
|||++.|||+||+|||||+...++.....+......+..++.....|+....|+..+.. ...++++........
T Consensus 338 gIpvv~dLP~VG~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~--~e~~~f~~t~~~~~~~~~P 415 (623)
T KOG1238|consen 338 GIPVVLDLPGVGQNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPG--VETLGFINTVSSNLSLDWP 415 (623)
T ss_pred CCCeeccCcccccccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCc--ceeeEEeccccccCcCCCC
Confidence 99999999999999999999877666555544444444455666778877777554321 001111111100000
Q ss_pred ---------CCCCCC------CChHHHHHHhhhccCCCccccccceeeecccccCceeEEEecCCCCCCCCeeecCCCCC
Q 011442 284 ---------TIPPKQ------RTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSH 348 (485)
Q Consensus 284 ---------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P~i~~~y~~~ 348 (485)
.+.... ...++++.++.... .. ....++..+++|.|||+|+|.|+||.+.|+|++||+.+
T Consensus 416 D~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~---~~--~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~ 490 (623)
T KOG1238|consen 416 DIELHFVAGSLSSDGLTALRKALGEIYQALFGELT---NS--DSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTH 490 (623)
T ss_pred CeeEEeccccccccchhhhhhhcchHHHHhhhhhh---cC--ceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCC
Confidence 000000 00011111111110 00 11346778999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhccccCCCCC-CCCCHHHHHHHHHhhccccccccccccc
Q 011442 349 PLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPK-HTNDTKSLEQFCKDTVITIWHYHGGCHV 427 (485)
Q Consensus 349 ~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~-~~~~d~~~~~~~~~~~~~~~H~~GTc~M 427 (485)
|+|++.++++++.+.++.++.+|+++.. .+... |...|.. ...+|+.|+||+|....|.||++|||+|
T Consensus 491 p~Dv~~~vegi~~~~~l~~s~af~~~~~-------r~~~~----~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckM 559 (623)
T KOG1238|consen 491 PEDVATLVEGIRTIIRLSNSKAFQRFGA-------RLWKK----PVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKM 559 (623)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHhcc-------hhccc----cCCCcccccCCCHHHHHHHHHhccceeeccCCceEe
Confidence 9999999999999999999999999872 21111 1111221 2468999999999999999999999999
Q ss_pred C------cccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhcc
Q 011442 428 G------KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGKAA 483 (485)
Q Consensus 428 G------~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~~~~~ 483 (485)
| +|||+++||||++|||||||||||.+|++||++|+||||||+|++|++++.....
T Consensus 560 Gp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~~~ 621 (623)
T KOG1238|consen 560 GPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLANKD 621 (623)
T ss_pred CCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9 8999999999999999999999999999999999999999999999998766554
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=5e-75 Score=613.66 Aligned_cols=435 Identities=25% Similarity=0.316 Sum_probs=314.1
Q ss_pred CCCCcccccccCCceeecCcccccchhhhcccccccCChhhhh-------cCCCChhhhccccccchhcccc--------
Q 011442 7 SPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIVH-------- 71 (485)
Q Consensus 7 ~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~-------~~gW~~~~l~~~~~~~e~~~~~-------- 71 (485)
...++||++++++.+.+++||+|||||+||+|+|+|+++++|+ ..+|+|++|+|||+++|+....
T Consensus 60 ~~~~~p~~~~~~~~~~~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~ 139 (532)
T TIGR01810 60 IYETEPEPHMNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHD 139 (532)
T ss_pred eeEcccCCCCCCceEeeecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCC
Confidence 3457899999999999999999999999999999999996543 2589999999999999986531
Q ss_pred -------CCCchhhHHHHHHHHHhCCCCCCCCCccCCCCceeeeeeEEcCCCccccHHH-hhhhc-CCCCeEEEccceEE
Q 011442 72 -------QPKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLASA-NPQKITVLIRATVQ 142 (485)
Q Consensus 72 -------~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~R~sa~~-~l~~~-~~~nl~v~~~~~V~ 142 (485)
.+...+..+.|.++++++|++.....+.....|+.. +...|.+|+|+++.. ||+.+ .++|++|+++++|+
T Consensus 140 G~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~-~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~ 218 (532)
T TIGR01810 140 GPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFRQEGFGP-MDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVT 218 (532)
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHcCCCccCCCCCCCccceEE-EEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEE
Confidence 112345678899999999986322111111112221 122357899999887 88766 58999999999999
Q ss_pred EEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCccccccC
Q 011442 143 KIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGM 222 (485)
Q Consensus 143 rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp~VG~nl 222 (485)
||++++ .+|+||++.+ .+...++. ++||||||||||+||+|||+|||||+++|+++||++++|||+||+||
T Consensus 219 rI~~~~----~ra~GV~~~~-~~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL 289 (532)
T TIGR01810 219 KINFEG----NRATGVEFKK-GGRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENL 289 (532)
T ss_pred EEEecC----CeEEEEEEEe-CCcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccch
Confidence 999974 3899999986 34444443 35999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeecCCCcccchh-HHh-hcchhhhhHHHhcCCCCCCCCCccccccccccccccccCCCCCCCChHHHHHHhh
Q 011442 223 ADNPMNAVFVPSNRPVEQSL-IET-VGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIR 300 (485)
Q Consensus 223 ~dH~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (485)
|||+...+.+..+.+..... ... ........|.....|..... .....+++... .....++....+..
T Consensus 290 ~DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~--------~~~~~p~~~~~~~~ 359 (532)
T TIGR01810 290 QDHLEVYVQHACKQPVSLYPSLNWLKQPFIGAQWLFGRKGAGASN--HFEGGGFVRSN--------DDVDYPNIQYHFLP 359 (532)
T ss_pred hhcccceeEEEecCCcccccccchhhhhHHHHHHHhcCCCCcccc--ccceeEEEecC--------CCCCCCCeEEEEEe
Confidence 99999888776654321100 000 00001112333223321110 00000000000 00000000000000
Q ss_pred ---hccCCCccccccceeeecccccCceeEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCccccccccc
Q 011442 301 ---NKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQC 377 (485)
Q Consensus 301 ---~~~~~~~~~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~ 377 (485)
..............+...+++|.|||+|+|+++||++.|.|+++|+.+|.|++.++++++.+++++++.+++.+..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~- 438 (532)
T TIGR01810 360 VAIRYDGTKAPKAHGFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRG- 438 (532)
T ss_pred eeeccCCCCCCCCCcEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccc-
Confidence 0000000000011233457889999999999999999999999999999999999999999999999887766541
Q ss_pred cchhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccC------cccCCCCeeeccCCceEeecccC
Q 011442 378 DQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVDGSTY 451 (485)
Q Consensus 378 ~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG------~VVD~~~rV~G~~nL~VvDaSv~ 451 (485)
.+. .|+ ....+|++|++|+|+...+.+|++|||||| +|||++|||||++||||||||||
T Consensus 439 -----~~~------~p~----~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~ 503 (532)
T TIGR01810 439 -----GEI------SPG----PEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIM 503 (532)
T ss_pred -----ccc------CCC----CCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccC
Confidence 000 121 234689999999999999999999999998 59999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHH
Q 011442 452 DESPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 452 P~~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
|+++++||++|+||||||+||+|+++
T Consensus 504 P~~~~~n~~~t~~aiaeraAd~I~~~ 529 (532)
T TIGR01810 504 PRITNGNLNAPVIMMGEKAADIIRGK 529 (532)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999865
No 4
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.9e-74 Score=612.36 Aligned_cols=438 Identities=24% Similarity=0.313 Sum_probs=315.1
Q ss_pred CCCcccccccCCceeecCcccccchhhhcccccccCChhhhh-------cCCCChhhhccccccchhcccc---------
Q 011442 8 PQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIVH--------- 71 (485)
Q Consensus 8 ~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~-------~~gW~~~~l~~~~~~~e~~~~~--------- 71 (485)
..+.||++.+++.+.+++||+|||||+||+|+|+|+++.+|+ ..+|+|++|+|||+++|+....
T Consensus 67 ~~~~p~~~~~~~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~g 146 (560)
T PRK02106 67 YETEPEPHMNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDG 146 (560)
T ss_pred eecccCCCCCCCeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCC
Confidence 467899999999999999999999999999999999996543 2589999999999999986510
Q ss_pred ----C---CCchhhHHHHHHHHHhCCCCCCCCCccCCCCceeeeeeEEcCCCccccHHH-hhhhc-CCCCeEEEccceEE
Q 011442 72 ----Q---PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLASA-NPQKITVLIRATVQ 142 (485)
Q Consensus 72 ----~---~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~R~sa~~-~l~~~-~~~nl~v~~~~~V~ 142 (485)
. ....+..+.|.++++++|++.....+.....|+.. +...|.+|+|+++.. ||+.+ +++|++|+++++|+
T Consensus 147 p~~~~~~~~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~-~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~ 225 (560)
T PRK02106 147 PLSVTRGKPGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGP-MDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTD 225 (560)
T ss_pred CEEEeCCCCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEE-EeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEE
Confidence 0 12345678899999999986332111111122221 222457899999987 88765 68999999999999
Q ss_pred EEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCccccccC
Q 011442 143 KIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGM 222 (485)
Q Consensus 143 rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp~VG~nl 222 (485)
||++++ ++|+||++.+.+ ...++. ++|+||||||+|+||+|||+|||||+++|+++||++++|||+||+||
T Consensus 226 rI~~~~----~~a~GV~~~~~~-~~~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL 296 (560)
T PRK02106 226 RILFEG----KRAVGVEYERGG-GRETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENL 296 (560)
T ss_pred EEEEeC----CeEEEEEEEeCC-cEEEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcCh
Confidence 999984 489999998744 334443 35999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeecCCCcccchh--HHhhcchhhhhHHHhcCCCCCCCCCccccccccccccccccCCCCCCCChHHHHHHhh
Q 011442 223 ADNPMNAVFVPSNRPVEQSL--IETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIR 300 (485)
Q Consensus 223 ~dH~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (485)
|||+...+.+..+.+..... ...........|.....|...... ....++.... ... ..+... .......+.
T Consensus 297 ~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~-~~~-~~p~~~--~~~~~~~~~ 370 (560)
T PRK02106 297 QDHLEVYIQYECKQPVSLYPALKWWNKPKIGAEWLFTGTGLGASNH--FEAGGFIRSR-AGV-DWPNIQ--YHFLPVAIR 370 (560)
T ss_pred hhCccceEEEEeCCCcccccccchhhhhHHHHHHHhcCCCCccccc--cceeeEEecC-CCC-CCCCeE--EEEeecccc
Confidence 99999877766554322100 000000111234333333221100 0000000000 000 000000 000000000
Q ss_pred hccCCCccccccceeeecccccCceeEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCccccccccccch
Q 011442 301 NKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQK 380 (485)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 380 (485)
.... .........+...+.+|.|||+|+|+++||++.|+|+++|+.++.|++.++++++.+++++++.+++.+..
T Consensus 371 ~~~~-~~~~~~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~---- 445 (560)
T PRK02106 371 YDGS-NAVKGHGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRG---- 445 (560)
T ss_pred ccCC-CCCCCCeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccc----
Confidence 0000 00000011233457899999999999999999999999999999999999999999999999887766541
Q ss_pred hHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccC----cccCCCCeeeccCCceEeecccCCCCCC
Q 011442 381 SVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG----KVVSTEYKVLGIDRLRVVDGSTYDESPG 456 (485)
Q Consensus 381 ~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG----~VVD~~~rV~G~~nL~VvDaSv~P~~~~ 456 (485)
.++ .|+ ....+|+++++|+++...+.+|++|||||| ||||++|||||++||||||+||||++++
T Consensus 446 --~~~------~p~----~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~ 513 (560)
T PRK02106 446 --REI------SPG----ADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITN 513 (560)
T ss_pred --ccc------CCC----cccCCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCC
Confidence 110 122 124678899999999988999999999999 7999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHh
Q 011442 457 TNPQGTVLMMGRYMGVKILRQR 478 (485)
Q Consensus 457 ~np~~ti~alA~r~A~~i~~~~ 478 (485)
+||++|+||||||+||+|+++.
T Consensus 514 ~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 514 GNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred cchHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998764
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-65 Score=538.63 Aligned_cols=435 Identities=24% Similarity=0.315 Sum_probs=317.3
Q ss_pred CCCCCcccccccCCceeecCcccccchhhhcccccccCChhhhh-------cCCCChhhhccccccchhcccc-------
Q 011442 6 TSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIVH------- 71 (485)
Q Consensus 6 ~~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~-------~~gW~~~~l~~~~~~~e~~~~~------- 71 (485)
-..+|.||+++.++.+.|+|||+|||||+||+|+|+|+++.||+ ..+|+|++++|||+++|+...+
T Consensus 64 w~~~~~~~~~~~~r~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~ 143 (542)
T COG2303 64 WGFRTEPEPHLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRT 143 (542)
T ss_pred CccccCcccCCCCccccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCC
Confidence 45678899999999999999999999999999999999996653 2569999999999999974432
Q ss_pred -C----C-------CchhhHHHHHHHHHhCCCCCCCCCccCCCCceeeeeeEEcCCCccccHHH-hhhh-cCCCCeEEEc
Q 011442 72 -Q----P-------KQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLAS-ANPQKITVLI 137 (485)
Q Consensus 72 -~----~-------~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~R~sa~~-~l~~-~~~~nl~v~~ 137 (485)
+ | ...+....|.+++.++|++....++-....|+...+.+.| +|+|+|+.. ||+. .+++|++|++
T Consensus 144 ~~g~~gp~~~~~~~~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~-~g~r~sa~~a~l~~a~~~~nl~v~t 222 (542)
T COG2303 144 WHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTIC-NGRRWSAARAYLKPALKRPNLTLLT 222 (542)
T ss_pred CcCCCCCccccCCCCchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeecc-CCeEeechhhcchhHhcCCceEEec
Confidence 0 0 1245678889999999986432221111123322233344 899999987 8876 4899999999
Q ss_pred cceEEEEEeecCCCCCeEEEEEEEeCCCC-eeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCc
Q 011442 138 RATVQKIVFDTSGKRPKAVGVIFKDENGN-QHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNA 216 (485)
Q Consensus 138 ~~~V~rI~~~~~~~~~~a~GV~~~~~~g~-~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp 216 (485)
++.|+||+++.+ |++||++...++. ..... ++++||||||+|+||+|||+||||+.+.|..+||.++.++|
T Consensus 223 ~a~v~ri~~~~~----r~~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~ 294 (542)
T COG2303 223 GARVRRILLEGD----RAVGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLP 294 (542)
T ss_pred CCEEEEEEEECC----eeEEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCc
Confidence 999999999985 9999999864432 23333 56999999999999999999999999999999999999999
Q ss_pred cccccCccCCCceeeecCCCcccchhHHhhcchhh--hhHHHhcCCCCCCCCCccccccccccccccccCCCCCCCChHH
Q 011442 217 HIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKL--GVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEA 294 (485)
Q Consensus 217 ~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (485)
+||+|||||....+.+..+.+.............. ..|.....|..... ....+ |....+....++.
T Consensus 295 ~vg~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~---~~~~g--------f~~~~~~~~~p~~ 363 (542)
T COG2303 295 GVGQNLQDHLEIYVAFEATEPTNDSVLSLFSKLGIGADRYLLTRDGPGATN---HFEGG--------FVRSGPAGEYPDG 363 (542)
T ss_pred chhHHHHhhhhhhhheeccCccccccccccccccccceeEEeecCCCcccc---ccccc--------ccccCccccCCCc
Confidence 99999999998877666554431111000000000 11222222211110 00000 1111111111111
Q ss_pred HHHHhhhccCCC--ccccccceeeecccccCceeEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccc
Q 011442 295 IQDYIRNKRTLP--HEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFL 372 (485)
Q Consensus 295 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~ 372 (485)
+..+....... ........+.....+|.|+|.|++++.||...|.|+++|++++.|++.+.++++..++++.+..+.
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~ 442 (542)
T COG2303 364 -QYHFAPLPLAIRAAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALD 442 (542)
T ss_pred -ccccccccccccccccCCccEEeeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccch
Confidence 11111000000 011112335566789999999999999999999999999999999999999999999999976666
Q ss_pred ccccccchhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccC-----cccCCCCeeeccCCceEee
Q 011442 373 NYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG-----KVVSTEYKVLGIDRLRVVD 447 (485)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rV~G~~nL~VvD 447 (485)
.+. ..++ .|+ ....+++++.+|++....+.+|++|||||| +|+|++|||||++||||+|
T Consensus 443 ~~~------~~e~------~~~----~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvD 506 (542)
T COG2303 443 ARR------KAEL------APG----PRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVD 506 (542)
T ss_pred hhH------HHhh------cCC----CccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeC
Confidence 544 1222 122 235678899999999999999999999999 3555999999999999999
Q ss_pred cccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 011442 448 GSTYDESPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 448 aSv~P~~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
||+||+++++||++||+|||||+||+|+++
T Consensus 507 aSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 507 ASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred cccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999884
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=1e-44 Score=374.81 Aligned_cols=399 Identities=16% Similarity=0.122 Sum_probs=247.1
Q ss_pred ecCcccccchhhhcccccccCChhh--hhcCCC--ChhhhccccccchhccccCCCc--hh--hHHHHHHHHHhC-CC-C
Q 011442 23 NARARVLGGGSSINAGFYTRASSQF--IERMGW--DAKLVNESFPWVERQIVHQPKQ--EG--WQKALRDSLLDV-GV-S 92 (485)
Q Consensus 23 ~~rG~~lGGsS~iN~~~~~r~~~~~--~~~~gW--~~~~l~~~~~~~e~~~~~~~~~--~~--~~~~~~~~~~~~-G~-~ 92 (485)
..|-|.|||+|.+|++.+.|.++++ +-..+| +|++|+|||+++|+.+++.+.. .+ ....+....+++ |+ .
T Consensus 111 ~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~ 190 (544)
T TIGR02462 111 EAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESLIGTSTDQFDESIRHNLVLRKLQDEYKGQRD 190 (544)
T ss_pred hheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcCCCcccchhHHHHHHHHhccccc
Confidence 4478899999999999999999842 222467 9999999999999998765421 11 122222233333 32 1
Q ss_pred CCCCCccCCCCceeeeeeEEcCCCccccHH-Hhhhhc-----CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CC
Q 011442 93 PFNGFTYDHIYGTKIGGTIFDRFGRRHTAA-ELLASA-----NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NG 165 (485)
Q Consensus 93 ~~~~~~~~~~~g~~~g~~~~~~~g~R~sa~-~~l~~~-----~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g 165 (485)
.... ...|.. ..|+.+.|+|+. +.++.+ .++|++|++++.|+||++++++ ..+|+||+|.+. +|
T Consensus 191 ~~~~-----PlA~~~---~~c~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~-~~~v~~v~~~d~~~g 261 (544)
T TIGR02462 191 FQPL-----PLACHR---RTDPTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETN-ESEIEAALVRDLLSG 261 (544)
T ss_pred cccC-----chhhhc---cCCCccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCC-CceeEEEEEEECCCC
Confidence 1110 011111 023457777764 344322 4789999999999999998642 138999999986 57
Q ss_pred CeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCccccccCccCCCceeeecCCCcccchhHHh
Q 011442 166 NQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIET 245 (485)
Q Consensus 166 ~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp~VG~nl~dH~~~~~~~~~~~~~~~~~~~~ 245 (485)
+.++++| |.||||||+|+||||||+|+++....- .|+..-...+.||||||||+...+.+.++.+........
T Consensus 262 ~~~~v~A-----~~vVLAagaIetpRLLL~S~~~~~~~p--~gl~Nss~~g~VGRnlmdh~~~~~~~~~~~~~~~~~~~~ 334 (544)
T TIGR02462 262 DRFEIKA-----DVYVLACGAVHNPQILVNSGFGQLGRP--DPTNPPPLLPSLGRYITEQSMTFCQIVLSTELVDSVRSD 334 (544)
T ss_pred cEEEEEC-----CEEEEccCchhhHHHHHhCCCCCCcCC--CCcCCCCCCCCCCcchhcCCCccEEEEecchhhhhccCC
Confidence 7777874 899999999999999999999842211 111111113689999999998776655544321111000
Q ss_pred hcchhhhhHHHh-----cCCCCCCCCCcccccc-ccccccccccCCCCCCCChHHHHHHhh--hc-cCCCccccccceee
Q 011442 246 VGITKLGVYIEA-----SSGFGESRDSIHCHHG-IMSAEIGQLSTIPPKQRTPEAIQDYIR--NK-RTLPHEAFKGGFIL 316 (485)
Q Consensus 246 ~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~ 316 (485)
.....|... ..++.... .+..+. ........+....+ +. .......+. .. ....... ....-+
T Consensus 335 ---~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~-w~-~~~~~~~~~~g~~~~~~~~~~-~v~l~~ 406 (544)
T TIGR02462 335 ---PRGLDWWKEKVANHMMKHPEDP--LPIPFRDPEPQVTTPFTEEHP-WH-TQIHRDAFSYGAVGPSIDSRV-IVDLRF 406 (544)
T ss_pred ---ccccccccccchhhhccccCCc--ccccccccCcccccccccccc-cc-hhhhhhhhhcccccccccccc-eeeEEE
Confidence 000011100 00000000 000000 00000000000000 00 000000000 00 0000000 001123
Q ss_pred ecccccCceeEEEecC--CCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhcccc
Q 011442 317 EKIASPISTGELSLIN--TNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANV 394 (485)
Q Consensus 317 ~~~~~P~srG~V~l~s--~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 394 (485)
.....|..+++|+|++ +|.++.|++.++|..++.|++.+.++++.+.+++...+.....
T Consensus 407 ~~e~lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~~G~~~~~------------------- 467 (544)
T TIGR02462 407 FGRTEPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAKIGGYLPG------------------- 467 (544)
T ss_pred EeccCCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCccc-------------------
Confidence 4456699999999975 6999999999999999999999999999999988764422111
Q ss_pred CCCCCCCCCHHHHHHHHHhhcccccccccccccC-----cccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHH
Q 011442 395 NLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG-----KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRY 469 (485)
Q Consensus 395 ~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r 469 (485)
. .+ .+. .....+|++|||||| +|||+++||||++||||+|+|+||+.+++||++|+||||+|
T Consensus 468 ~-~~----------~~~--~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r 534 (544)
T TIGR02462 468 S-LP----------QFM--EPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIK 534 (544)
T ss_pred c-cc----------ccc--CCCccccCCCCeecCCCCCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHH
Confidence 0 00 011 123578999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 011442 470 MGVKILRQ 477 (485)
Q Consensus 470 ~A~~i~~~ 477 (485)
+|++|+++
T Consensus 535 ~a~~i~~~ 542 (544)
T TIGR02462 535 SAEYIINN 542 (544)
T ss_pred HHHHHHHh
Confidence 99999865
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=7.7e-41 Score=328.53 Aligned_cols=211 Identities=32% Similarity=0.500 Sum_probs=158.1
Q ss_pred CCCCCcccccccCCceeecCcccccchhhhcccccccCChhhhh-------cCCCChhhhccccccchhccc--------
Q 011442 6 TSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIV-------- 70 (485)
Q Consensus 6 ~~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~-------~~gW~~~~l~~~~~~~e~~~~-------- 70 (485)
..+.+.||..++++.+.+++|++|||||+||+|+|+|+++++|+ ..+|+|++|+|||+++|+...
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~ 136 (296)
T PF00732_consen 57 WGYYSGPQPFLNGRTINWPRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGV 136 (296)
T ss_dssp BGEEECEEECTTTTSEEEEEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCB
T ss_pred cccccccccccccceeeeecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccccccccc
Confidence 34567788889999999999999999999999999999996543 246999999999999994321
Q ss_pred -----c---CCCchhhHHHHHHHHHhCCCC-CCCCCccCCCCceeeee-eEEcCCCccccHHH-hhhhc-CCCCeEEEcc
Q 011442 71 -----H---QPKQEGWQKALRDSLLDVGVS-PFNGFTYDHIYGTKIGG-TIFDRFGRRHTAAE-LLASA-NPQKITVLIR 138 (485)
Q Consensus 71 -----~---~~~~~~~~~~~~~~~~~~G~~-~~~~~~~~~~~g~~~g~-~~~~~~g~R~sa~~-~l~~~-~~~nl~v~~~ 138 (485)
+ .+...+....|.++++++|++ +.+ ......|..+. ...|++|+|+|+.. ||+.+ +++|++|+++
T Consensus 137 ~~~~~v~~~~~~~~~~~~~~~~a~~~~G~~~~~~---~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~ 213 (296)
T PF00732_consen 137 DGPLPVSSSPPYPSPMNQALMDAAEELGIPVPQD---FNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTN 213 (296)
T ss_dssp SSSEEEHHHCSCHCTHHHHHHHHHHHTTHHBCSC---TTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEES
T ss_pred ccccccccccCCCCHHHHHHHHHHHHcCCccccc---cccccccccccccccccchhceehhhcccchhhccCCccEEcC
Confidence 1 223456678899999999986 221 11112222211 11478999999876 88765 6789999999
Q ss_pred ceEEEEEeecCCCCCeEEEEEEEeCCCC-eeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCcc
Q 011442 139 ATVQKIVFDTSGKRPKAVGVIFKDENGN-QHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAH 217 (485)
Q Consensus 139 ~~V~rI~~~~~~~~~~a~GV~~~~~~g~-~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp~ 217 (485)
++|+||+++.++ .+|+||++.+.++. ...+. ++|+||||||||+||+|||+|||||.++|+++||+++.|+|
T Consensus 214 ~~V~~i~~~~~~--~~a~gV~~~~~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp- 286 (296)
T PF00732_consen 214 ARVTRIIFDGDG--GRATGVEYVDNDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP- 286 (296)
T ss_dssp EEEEEEEEETTS--TEEEEEEEEETTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-
T ss_pred cEEEEEeeeccc--cceeeeeeeecCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-
Confidence 999999997433 69999999987666 23333 35999999999999999999999999999999999999999
Q ss_pred ccccCccCC
Q 011442 218 IGKGMADNP 226 (485)
Q Consensus 218 VG~nl~dH~ 226 (485)
||+||||||
T Consensus 287 VG~nl~dH~ 295 (296)
T PF00732_consen 287 VGRNLQDHP 295 (296)
T ss_dssp TTECEB--E
T ss_pred chhchhccc
Confidence 999999997
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=1e-34 Score=253.93 Aligned_cols=136 Identities=29% Similarity=0.535 Sum_probs=110.1
Q ss_pred cCceeEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhccccC--CCC-
Q 011442 322 PISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVN--LVP- 398 (485)
Q Consensus 322 P~srG~V~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~p- 398 (485)
|+|||+|+|+++|+++.|.|+++|+.++.|++.+.++++.+++++++. ++++.. .+ ..|+. ..+
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~------~~------~~~~~~~~~~~ 67 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGA------GE------LLPGPSPFCPD 67 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEE------EE------EESCGCSCCGC
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccc------cc------ccccccccccc
Confidence 899999999999999999999999999999999999999999999998 655531 00 01110 111
Q ss_pred CCCCCHHHHHHHHHhhcccccccccccccC-----cccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHH
Q 011442 399 KHTNDTKSLEQFCKDTVITIWHYHGGCHVG-----KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYM 470 (485)
Q Consensus 399 ~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~ 470 (485)
....+++++++|+++...+.+|++|||||| +|||++|||||++||||+||||||+++++||++|+||||||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 68 ASLDSDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp STTTCHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cccccchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 234578899999999999999999999999 999999999999999999999999999999999999999996
No 9
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.15 E-value=0.013 Score=62.92 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=46.6
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch-HHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT-PQMLK 194 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T-P~LLl 194 (485)
+...|++|++++.|++|+.|++ .+++||.+.. +|+.++++ |+|-||||+|.++. |.++.
T Consensus 223 ~~~~gv~i~~~~~~~~Li~d~~---g~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 223 LKDAGVPLWLDSPMTELITDPD---GAVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHhCCceEEeCCEEEEEEECCC---CcEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHHH
Confidence 4567999999999999998754 4899999864 67777776 45689999999985 44443
No 10
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.79 E-value=0.027 Score=60.26 Aligned_cols=59 Identities=15% Similarity=0.315 Sum_probs=46.5
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 195 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~ 195 (485)
+.+.+++|++++.|++|+.++ .+++||.+.. +|+..++++ ++.||||+|.+..-+-|+.
T Consensus 218 ~~~~gv~v~~~t~v~~l~~~~----g~v~Gv~~~~-~g~~~~i~A----~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 218 LQRAGVPVLLNTPLTDLYVED----GRVTGVHAAE-SGEPQLIRA----RRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHcCCCEEEeCCEEEEEEEeC----CEEEEEEEEe-CCcEEEEEe----ceeEEEccCCcCcCHHHHH
Confidence 456799999999999999764 3899999864 666667764 4689999999988665544
No 11
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.78 E-value=0.029 Score=59.41 Aligned_cols=57 Identities=14% Similarity=0.334 Sum_probs=44.5
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch-HHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT-PQMLK 194 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T-P~LLl 194 (485)
..++++|++++.|++|+.++ .+++||.+.. +|...+++ |+|.||||+|.++. +.++.
T Consensus 185 ~~~gv~i~~~t~~~~Li~~~----g~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 185 RFPNARLRLNTPLVELVVED----GRVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred hCCCCEEEeCCEEEEEEecC----CEEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHHH
Confidence 34699999999999999864 3899999864 67666777 45789999999965 44443
No 12
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.54 E-value=0.037 Score=59.29 Aligned_cols=56 Identities=16% Similarity=0.368 Sum_probs=44.7
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
.+.+.+++|+++++|++|+.++ .+++||++.. +|+.++++ ++|-||||+|.+....
T Consensus 217 ~~~~~gv~i~~~~~v~~Li~~~----g~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~ 272 (557)
T PRK12844 217 AALAAGVPLWTNTPLTELIVED----GRVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNA 272 (557)
T ss_pred HHHhCCCEEEeCCEEEEEEEeC----CEEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCH
Confidence 3456799999999999999874 3899999874 67666676 4578999999988743
No 13
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.42 E-value=0.039 Score=57.75 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=50.6
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCC
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGP 200 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~ 200 (485)
.+.+.+++|+.+++|++|+.++ .+++||.+.+.+|+...+++ |.||||+|.+..++.|+.+-.++
T Consensus 140 ~~~~~gv~i~~~t~v~~l~~~~----g~v~gv~~~~~~g~~~~i~a-----~~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 140 SAERLGVEIRYDAPVTALELDD----GRFVGARAGSAAGGAERIRA-----KAVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHHHCCCEEEcCCEEEEEEecC----CeEEEEEEEccCCceEEEEC-----CEEEECCCCCCCCHHHHHhhcCC
Confidence 3455689999999999998754 38999998644565556653 89999999999988888765543
No 14
>PRK07121 hypothetical protein; Validated
Probab=95.03 E-value=0.063 Score=56.65 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=45.1
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
.+.+.+++|+++++|++|+.+++ .+++||++.+ +++..+++ ++|.||||+|.+..-+-|
T Consensus 186 ~~~~~gv~i~~~~~v~~l~~~~~---g~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em 244 (492)
T PRK07121 186 RAAALGVQIRYDTRATRLIVDDD---GRVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREM 244 (492)
T ss_pred HHHhCCCEEEeCCEEEEEEECCC---CCEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHH
Confidence 34567899999999999998754 3899999864 56556666 458999999988753333
No 15
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.77 E-value=0.1 Score=53.71 Aligned_cols=57 Identities=19% Similarity=0.429 Sum_probs=42.4
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
++..+.+|+.+++|++|+.+++ +++||.+.+ .+|+..++++ +.||||+|.+.. .++.
T Consensus 151 ~~~~gv~i~~~~~~~~Li~e~g----~V~Gv~~~~~~~g~~~~i~A-----~aVIlAtGG~~~-~~~~ 208 (417)
T PF00890_consen 151 AEEAGVDIRFNTRVTDLITEDG----RVTGVVAENPADGEFVRIKA-----KAVILATGGFGG-ELLR 208 (417)
T ss_dssp HHHTTEEEEESEEEEEEEEETT----EEEEEEEEETTTCEEEEEEE-----SEEEE----BGG-HHHH
T ss_pred HhhcCeeeeccceeeeEEEeCC----ceeEEEEEECCCCeEEEEee-----eEEEeccCcccc-cccc
Confidence 3445699999999999999753 999999984 3677777875 699999999999 4443
No 16
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.65 E-value=0.088 Score=56.41 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=43.4
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
+.+.+++|++++.|++|+.++ .+++||.+.. +|+...++ ++|-||||+|.++...
T Consensus 227 ~~~~Gv~i~~~t~v~~Li~~~----g~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 227 VLRAGIPIWTETSLVRLTDDG----GRVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHCCCEEEecCEeeEEEecC----CEEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccH
Confidence 445789999999999998643 3899998865 56666666 4689999999998654
No 17
>PRK12839 hypothetical protein; Provisional
Probab=94.64 E-value=0.084 Score=56.66 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=43.8
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
.+.+.+++|++++.|++|+.+++ .+++||.+.+.+|. .++. ++|.||||+|.+..-.
T Consensus 223 ~a~~~Gv~i~~~t~v~~Li~~~~---g~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~ 279 (572)
T PRK12839 223 SADDLGVDLRVSTSATSLTTDKN---GRVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDV 279 (572)
T ss_pred HHHHCCCEEEcCCEEEEEEECCC---CcEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCH
Confidence 34456899999999999987654 38999998765553 4454 3589999999998733
No 18
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.42 E-value=0.12 Score=54.72 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=45.3
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+...++++.++++|++|+++.+++.++|+||++.. +|+..++.. .+++-|||+.|.+..
T Consensus 235 ~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~-~~~~~~I~l--~~~DlVivTnGs~t~ 294 (576)
T PRK13977 235 YLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR-NGKEETIDL--TEDDLVFVTNGSITE 294 (576)
T ss_pred HHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe-CCceeEEEe--cCCCEEEEeCCcCcc
Confidence 345679999999999999986333336999999975 455555443 378999999998753
No 19
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=94.06 E-value=0.063 Score=51.68 Aligned_cols=51 Identities=25% Similarity=0.519 Sum_probs=41.4
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.-++|+++++|.+|+- ++ .++.||+|.+.+|+...+. ...||||.|.+.-
T Consensus 157 pe~~ki~~nskvv~il~-n~---gkVsgVeymd~sgek~~~~-----~~~VVlatGGf~y 207 (477)
T KOG2404|consen 157 PELVKILLNSKVVDILR-NN---GKVSGVEYMDASGEKSKII-----GDAVVLATGGFGY 207 (477)
T ss_pred hHHHhhhhcceeeeeec-CC---CeEEEEEEEcCCCCcccee-----cCceEEecCCcCc
Confidence 34579999999999993 33 4899999999888776554 3899999998874
No 20
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.03 E-value=0.15 Score=55.04 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=44.4
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
.+.+.+++|+.++.|++|+.++ .+++||.+.+ ++...+++ ++|.||||+|.+..-.-+
T Consensus 226 ~a~~~Gv~i~~~t~v~~l~~~~----g~v~GV~~~~-~~~~~~i~----a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 226 SAEDLGVRIWESAPARELLRED----GRVAGAVVET-PGGLQEIR----ARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHhCCCEEEcCCEEEEEEEeC----CEEEEEEEEE-CCcEEEEE----eCCEEEEcCCCcccCHHH
Confidence 3455789999999999998764 3899999875 44445565 458999999999765544
No 21
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=93.91 E-value=0.14 Score=53.16 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=42.2
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+.+.+++|+.++.|++|+.+++ .+++||++.+.+++...+. +|.||||+|.+..
T Consensus 139 ~~~~~gv~i~~~~~v~~l~~~~~---g~v~Gv~~~~~~g~~~~~~-----a~~VVlAtGg~~~ 193 (439)
T TIGR01813 139 KAKKEGIDTRLNSKVEDLIQDDQ---GTVVGVVVKGKGKGIYIKA-----AKAVVLATGGFGS 193 (439)
T ss_pred HHHHcCCEEEeCCEeeEeEECCC---CcEEEEEEEeCCCeEEEEe-----cceEEEecCCCCC
Confidence 34556899999999999998654 3899999876445443444 4999999998876
No 22
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=93.81 E-value=0.15 Score=54.92 Aligned_cols=56 Identities=16% Similarity=0.338 Sum_probs=43.8
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
.+.+.+++|++++.|++|+.++ .+++||.+.. +|+.+++. +++.||||+|.+..-+
T Consensus 230 ~~~~~Gv~i~~~t~v~~Li~~~----g~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~ 285 (578)
T PRK12843 230 SLRARGVRILTQTDVESLETDH----GRVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHP 285 (578)
T ss_pred HHHhCCCEEEeCCEEEEEEeeC----CEEEEEEEec-CCeEEEEE----ccceEEECCCCcccCH
Confidence 3455789999999999998764 3899999864 56655665 4589999999998743
No 23
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.35 E-value=0.21 Score=53.44 Aligned_cols=54 Identities=26% Similarity=0.489 Sum_probs=43.3
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.+++|++++.|++|+.+++ .+++||.+.+ .+|..+.+++ |.||||+|.+..
T Consensus 144 ~~~~gv~i~~~t~v~~Li~~~~---~~v~Gv~~~~~~~g~~~~i~A-----kaVIlATGG~~~ 198 (543)
T PRK06263 144 LIKERIKILEEVMAIKLIVDEN---REVIGAIFLDLRNGEIFPIYA-----KATILATGGAGQ 198 (543)
T ss_pred HhcCCCEEEeCeEeeeeEEeCC---cEEEEEEEEECCCCcEEEEEc-----CcEEECCCCCCC
Confidence 4557999999999999998754 3699998876 4676666663 899999999874
No 24
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.19 E-value=0.24 Score=53.15 Aligned_cols=54 Identities=22% Similarity=0.178 Sum_probs=43.5
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.+++|+.++.+++|+.+++ ++++||.+.+ .+|+...+.+ |-||||+|.+..
T Consensus 136 ~~~~gi~i~~~~~~~~Li~~~~---g~v~Gv~~~~~~~g~~~~i~A-----kaVVLATGG~~~ 190 (570)
T PRK05675 136 NLKNGTTFLNEWYAVDLVKNQD---GAVVGVIAICIETGETVYIKS-----KATVLATGGAGR 190 (570)
T ss_pred HhccCCEEEECcEEEEEEEcCC---CeEEEEEEEEcCCCcEEEEec-----CeEEECCCCccc
Confidence 4567999999999999998644 4999999865 3676666664 899999998874
No 25
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=92.91 E-value=0.29 Score=52.96 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=41.3
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcch
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
..|++|+.++.|++|+.+++ .+++||.+.+. +|....+.+ |-||||+|.++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~---grV~GV~~~~~~~g~~~~i~A-----kaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDG---NRARGIIARNLVTGEIETHSA-----DAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCC---CEEEEEEEEECCCCcEEEEEc-----CEEEECCCCCcC
Confidence 46899999999999998654 38999998764 455555653 899999998763
No 26
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=92.86 E-value=0.28 Score=52.61 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=42.5
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.+++|+.++.|++|+.++ ++++||.+.+ .+|....+.+ |-||||+|.++.
T Consensus 129 ~~~~gi~i~~~~~~~~Li~~~----g~v~Ga~~~~~~~g~~~~i~A-----kaVILATGG~~~ 182 (565)
T TIGR01816 129 NLKADTSFFNEYFALDLLMED----GECRGVIAYCLETGEIHRFRA-----KAVVLATGGYGR 182 (565)
T ss_pred HHhCCCEEEeccEEEEEEeeC----CEEEEEEEEEcCCCcEEEEEe-----CeEEECCCCccc
Confidence 456789999999999999763 3899999865 3566666664 899999998864
No 27
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.86 E-value=0.25 Score=53.76 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=42.4
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+...|++|+.++.|++|+.++ .+++||.+.+. +|....+.+ |.||||+|.++.
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d~----g~V~GV~~~~~~~g~~~~i~A-----kaVVLATGG~g~ 233 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVVD----GRARGIVARNLVTGEIERHTA-----DAVVLATGGYGN 233 (640)
T ss_pred HHhcCCEEEeceEEEEEEEeC----CEEEEEEEEECCCCcEEEEEC-----CEEEECCCCccc
Confidence 345799999999999999864 38999998764 565555653 899999999875
No 28
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.69 E-value=0.29 Score=52.90 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=42.9
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.+++|++++.|++|+.+++ .+++||.+.+ .+|..+.+.+ |.||||+|.++.
T Consensus 159 ~~~~gi~i~~~~~v~~Li~~~~---g~v~Gv~~~~~~~g~~~~i~A-----kaVVLATGG~~~ 213 (598)
T PRK09078 159 SLKHNAEFFIEYFALDLIMDDG---GVCRGVVAWNLDDGTLHRFRA-----HMVVLATGGYGR 213 (598)
T ss_pred HhhcCCEEEEeEEEEEEEEcCC---CEEEEEEEEECCCCcEEEEEc-----CEEEECCCCCcc
Confidence 4457899999999999998753 3899999864 3566666663 889999998875
No 29
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=92.51 E-value=0.61 Score=47.70 Aligned_cols=66 Identities=21% Similarity=0.322 Sum_probs=48.6
Q ss_pred hhhhc-CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 124 LLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 124 ~l~~~-~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
++..+ ..+|++|..+++|+.|....++ ..-|.+.+ ..|...++++ |-|+|.||. ++=.||+.|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg----~W~v~~~~~~~~~~~~v~a-----~FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDG----RWEVKVKDLKTGEKREVRA-----KFVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCC----CEEEEEEecCCCCeEEEEC-----CEEEECCch-HhHHHHHHcCCh
Confidence 44444 4579999999999999876542 23344443 2566777774 999999998 688899999985
No 30
>PRK06175 L-aspartate oxidase; Provisional
Probab=92.18 E-value=0.37 Score=49.89 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=39.7
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
++.|++|+.++.|++|+.++ .+++||.+.+ ++...++.+ |.||||+|.+..
T Consensus 140 ~~~gV~i~~~t~v~~Li~~~----~~v~Gv~~~~-~g~~~~i~A-----k~VILAtGG~~~ 190 (433)
T PRK06175 140 KRKNITIIENCYLVDIIEND----NTCIGAICLK-DNKQINIYS-----KVTILATGGIGG 190 (433)
T ss_pred hcCCCEEEECcEeeeeEecC----CEEEEEEEEE-CCcEEEEEc-----CeEEEccCcccc
Confidence 35699999999999998764 3899988764 555555653 899999998764
No 31
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.18 E-value=0.42 Score=51.56 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=43.0
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+...+++|+.++.|++|+.+++ .+++||.+.+ .+|....+.+ |-||||+|.+..
T Consensus 153 ~~~~gi~i~~~~~~~~Li~~~~---g~v~Gv~~~~~~~g~~~~i~A-----kaVILATGG~~~ 207 (588)
T PRK08958 153 NLKNHTTIFSEWYALDLVKNQD---GAVVGCTAICIETGEVVYFKA-----RATVLATGGAGR 207 (588)
T ss_pred hhhcCCEEEeCcEEEEEEECCC---CEEEEEEEEEcCCCcEEEEEc-----CeEEECCCCccc
Confidence 4457899999999999998644 4899999864 3566666663 899999998874
No 32
>PLN02815 L-aspartate oxidase
Probab=92.10 E-value=0.34 Score=52.24 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=41.7
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcc
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+.+|++|+.++.|++|+.+++++..+++||.+.+. +|....+.+ |-||||+|.++
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~A-----kaVILATGG~g 222 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFIS-----KVTLLASGGAG 222 (594)
T ss_pred hcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEe-----ceEEEcCCcce
Confidence 34699999999999999864321125999998653 566566664 89999999886
No 33
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=92.09 E-value=0.4 Score=50.73 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=43.8
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchH-HHHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTP-QMLKL 195 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP-~LLl~ 195 (485)
.+...+++|++++.|++|+.++ .+++||.+...++...++.+ |.||||+|.+... .++..
T Consensus 199 ~~~~~gv~i~~~t~v~~l~~~~----g~V~Gv~~~~~~g~~~~i~a-----~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 199 NVQERKIPLFVNADVTKITEKD----GKVTGVKVKINGKETKTISS-----KAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHHHcCCeEEeCCeeEEEEecC----CEEEEEEEEeCCCeEEEEec-----CeEEEeCCCcccCHHHHHH
Confidence 3445689999999999998643 38999998754555556653 8999999987654 44443
No 34
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=92.06 E-value=0.46 Score=51.20 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=43.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
+.+.+++|++++.|++|+.++ .+++||.+.+.+ ....+. ++|.||||+|.+..-.-++
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~~----g~V~GV~~~~~~-~~~~i~----a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTEG----GRVVGARVIDAG-GERRIT----ARRGVVLACGGFSHDLARI 281 (574)
T ss_pred HHhCCCEEEeCCEEEEEEeeC----CEEEEEEEEcCC-ceEEEE----eCCEEEEcCCCccchHHHH
Confidence 456789999999999999874 389999987533 334455 3478999999987544443
No 35
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=91.83 E-value=0.3 Score=48.50 Aligned_cols=56 Identities=29% Similarity=0.431 Sum_probs=41.5
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+.+.+++|+++++|++|..+++ +++||+.. +| ++++ +.||+|+|+ .|++|+..+|+
T Consensus 157 ~~~~Gv~i~~~~~V~~i~~~~~----~v~gv~~~--~g---~i~a-----d~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 157 AQRAGVEIRTGTEVTSIDVDGG----RVTGVRTS--DG---EIRA-----DRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHTT-EEEESEEEEEEEEETT----EEEEEEET--TE---EEEE-----CEEEE--GG-GHHHHHHTTTT
T ss_pred HHHhhhhccccccccchhhccc----cccccccc--cc---cccc-----ceeEecccc-cceeeeecccc
Confidence 3445899999999999998875 78888874 44 2554 999999997 78888887754
No 36
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=91.81 E-value=0.43 Score=51.80 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=42.3
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.+++|+.++.|++|+.+++ .+++||.+.+ .+|+.+.+.+ |-||||+|.+..
T Consensus 176 a~~~gv~i~~~~~~~~Li~~~~---g~v~Gv~~~~~~~g~~~~i~A-----kaVVLATGG~~~ 230 (617)
T PTZ00139 176 SLKYDCNFFIEYFALDLIMDED---GECRGVIAMSMEDGSIHRFRA-----HYTVIATGGYGR 230 (617)
T ss_pred HHhCCCEEEeceEEEEEEECCC---CEEEEEEEEECCCCeEEEEEC-----CcEEEeCCCCcc
Confidence 4457999999999999998443 3899999865 3566666653 899999998864
No 37
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.69 E-value=0.46 Score=51.03 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=41.4
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+.+.+++|+.++.|++|+.++ .+++||.+.+. +|....+.+ |-||||+|.++
T Consensus 146 ~~~~gv~i~~~~~~~~Li~~~----g~v~Gv~~~~~~~g~~~~i~A-----kaVVLATGG~~ 198 (566)
T PRK06452 146 TSGLNVDFYNEWFSLDLVTDN----KKVVGIVAMQMKTLTPFFFKT-----KAVVLATGGMG 198 (566)
T ss_pred HHhCCCEEEeCcEEEEEEEEC----CEEEEEEEEECCCCeEEEEEe-----CeEEECCCccc
Confidence 344689999999999999864 39999998764 445555553 89999999987
No 38
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=91.36 E-value=0.48 Score=51.55 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=42.9
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.+++|+.++.|++|+.+++ .++.||.+.+. +|+...+.+ |-||||+|.++-
T Consensus 197 a~~~gv~i~~~~~~~~Li~~~~---g~v~Gv~~~~~~~g~~~~i~A-----kaVILATGG~g~ 251 (635)
T PLN00128 197 AMKHNTQFFVEYFALDLIMDSD---GACQGVIALNMEDGTLHRFRA-----HSTILATGGYGR 251 (635)
T ss_pred HHhCCCEEEEeeEEEEEEEcCC---CEEEEEEEEEcCCCeEEEEEc-----CeEEECCCCCcc
Confidence 4456899999999999988643 38999998753 566666663 899999999874
No 39
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=91.33 E-value=0.54 Score=54.91 Aligned_cols=57 Identities=21% Similarity=0.427 Sum_probs=44.4
Q ss_pred CCCeEEEccceEEEEEeecCC---C--CCeEEEEEEEeC---CCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 130 PQKITVLIRATVQKIVFDTSG---K--RPKAVGVIFKDE---NGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~---~--~~~a~GV~~~~~---~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
+.+++|++++.|++|+.++++ + ..+++||.+.+. +|+...+.| |-||||+|.++.-.
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~A-----kaVILATGGf~~N~ 623 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLA-----DAVILATGGFSNDH 623 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEe-----ceEEEecCCcccCc
Confidence 368999999999999987421 1 238999999865 676666663 89999999998743
No 40
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=91.06 E-value=0.7 Score=49.06 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=48.0
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
.+...+++|++++.|+.|..+++ +++||++.+. .|...++.+ +.||+|||+ .+.+|+...|+
T Consensus 137 ~A~~~Ga~i~~~t~V~~i~~~~~----~v~gv~v~~~~~g~~~~i~a-----~~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 137 DAQEHGARIFTYTKVTGLIREGG----RVTGVKVEDHKTGEEERIEA-----QVVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred HHHHcCCEEEcCcEEEEEEEECC----EEEEEEEEEcCCCcEEEEEc-----CEEEECCCc-chHHHHHhcCC
Confidence 44567899999999999987653 7889998753 455556764 999999997 57888877665
No 41
>PRK08275 putative oxidoreductase; Provisional
Probab=90.98 E-value=0.51 Score=50.55 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=41.0
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+.+.+++|+.++.|++|+.+++ .+++||.+.+. +|....+.+ |.||||+|.+.
T Consensus 147 ~~~~gv~i~~~~~v~~Li~~~~---g~v~Gv~~~~~~~g~~~~i~A-----k~VIlATGG~~ 200 (554)
T PRK08275 147 LKRARVLITNRIMATRLLTDAD---GRVAGALGFDCRTGEFLVIRA-----KAVILCCGAAG 200 (554)
T ss_pred HHHCCCEEEcceEEEEEEEcCC---CeEEEEEEEecCCCcEEEEEC-----CEEEECCCCcc
Confidence 4457899999999999998643 38999987643 565555653 89999999875
No 42
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.95 E-value=0.63 Score=50.62 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=38.7
Q ss_pred CeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcch
Q 011442 132 KITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 132 nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
|++|+.++.|++|+.++ .++.||.+.+. +|....+.+ |.||||+|.++.
T Consensus 165 ~v~i~~~~~v~~L~~~~----g~v~Gv~~~~~~~g~~~~i~A-----k~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKDG----GRIAGAFGYWRESGRFVLFEA-----PAVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEEC----CEEEEEEEEECCCCeEEEEEc-----CeEEECCCcccC
Confidence 49999999999999764 38999987653 565556653 899999998764
No 43
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=90.48 E-value=0.63 Score=50.88 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=42.5
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.+++|+.++.|++|+.++ .++.||.+.+ .+|+...+.+ |-||||+|.+.-
T Consensus 168 ~~~~gv~i~~~~~~~~Li~~~----g~v~Gv~~~~~~~G~~~~i~A-----kaVVLATGG~g~ 221 (657)
T PRK08626 168 AIKLGVPVHDRKEAIALIHDG----KRCYGAVVRCLITGELRAYVA-----KATLIATGGYGR 221 (657)
T ss_pred HHhCCCEEEeeEEEEEEEEEC----CEEEEEEEEEcCCCcEEEEEc-----CeEEECCCcccC
Confidence 455799999999999999764 3899999876 3676666653 899999998763
No 44
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=90.15 E-value=0.38 Score=49.33 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=41.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+++|++|+.++.+.+|+.+++ ..+.||.+.+.++...++++ +.||||+|.++
T Consensus 145 ~~p~I~v~e~~~a~~li~~~~---~~~~Gv~~~~~~~~~~~~~a-----~~vVLATGG~g 196 (518)
T COG0029 145 NRPNITVLEGAEALDLIIEDG---IGVAGVLVLNRNGELGTFRA-----KAVVLATGGLG 196 (518)
T ss_pred cCCCcEEEecchhhhhhhcCC---ceEeEEEEecCCCeEEEEec-----CeEEEecCCCc
Confidence 569999999999999998875 35559999864444556664 99999999764
No 45
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.80 E-value=0.92 Score=48.85 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=41.5
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+.+.|++|++++.|++|+.++ .++.||...+ .+|....+.+ |.||||+|.+..
T Consensus 144 ~~~~~gi~i~~~t~v~~L~~~~----g~v~Gv~~~~~~~g~~~~i~A-----kaVVlATGG~~~ 198 (575)
T PRK05945 144 NLRRYGVTIYDEWYVMRLILED----NQAKGVVMYHIADGRLEVVRA-----KAVMFATGGYGR 198 (575)
T ss_pred HHhhCCCEEEeCcEEEEEEEEC----CEEEEEEEEEcCCCeEEEEEC-----CEEEECCCCCcC
Confidence 3455799999999999998764 3899998654 3555555653 899999999864
No 46
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=89.80 E-value=0.76 Score=49.42 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=41.3
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.+++|+.++.|++|+.++ .+++||.+.+. +|....+.+ |-||||+|.+..
T Consensus 139 ~~~~gv~i~~~~~v~~L~~~~----g~v~Gv~~~~~~~g~~~~i~A-----k~VVlAtGG~~~ 192 (566)
T TIGR01812 139 CLKLGVSFFNEYFALDLIHDD----GRVRGVVAYDLKTGEIVFFRA-----KAVVLATGGYGR 192 (566)
T ss_pred HHHcCCEEEeccEEEEEEEeC----CEEEEEEEEECCCCcEEEEEC-----CeEEECCCcccC
Confidence 334599999999999999864 38999998653 565555653 899999998763
No 47
>PRK08071 L-aspartate oxidase; Provisional
Probab=89.70 E-value=0.69 Score=49.00 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=40.6
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+++|+.++.|++|+.++ .++.||.+.+.+|+...+.+ |.||||+|.+..
T Consensus 142 ~gV~i~~~~~v~~Li~~~----g~v~Gv~~~~~~g~~~~i~A-----k~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIEN----GRCIGVLTKDSEGKLKRYYA-----DYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecC----CEEEEEEEEECCCcEEEEEc-----CeEEEecCCCcc
Confidence 689999999999998764 38999998765566556653 899999999875
No 48
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=89.53 E-value=0.92 Score=48.55 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=39.8
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC--C------------CCeeEEEecCCCCceEEEecCCcch-HHHHH
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE--N------------GNQHQAFLAGNPKSEVILSCGAIGT-PQMLK 194 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~--~------------g~~~~v~a~~~a~keVILaAGai~T-P~LLl 194 (485)
..+++|++++.+++|+.++ .+++||.+.+. + +...++. | |-||||+|.++. +.++.
T Consensus 164 ~~gv~i~~~t~~~~Li~~~----g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~----A-kaVILATGGf~~n~em~~ 234 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVTD----GAVTGVRGTVLEPSDAERGEASSREVVGEFELR----A-QAVIVTSGGIGGNHELVR 234 (549)
T ss_pred hCCceEEecCEeeEEEEeC----CEEEEEEEEecccccccccccccccccceEEEe----c-CEEEEeCCCcccCHHHHH
Confidence 4579999999999999764 38999997421 1 1233444 3 789999999884 44443
No 49
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=89.49 E-value=1.1 Score=48.01 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=46.9
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
.+...++++++++.|+.|..+++ +++||++.+. .|+..++.+ +.||+|||+ .+.+|+...|+
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~~~----~v~gv~v~d~~~g~~~~i~A-----~~VVnAaG~-wa~~l~~~~g~ 220 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIREGD----TVCGVRVRDHLTGETQEIHA-----PVVVNAAGI-WGQHIAEYADL 220 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEcCC----eEEEEEEEEcCCCcEEEEEC-----CEEEECCCh-hHHHHHHhcCC
Confidence 34456899999999999987643 8999998753 354556664 899999997 57788766554
No 50
>PRK07395 L-aspartate oxidase; Provisional
Probab=89.39 E-value=0.61 Score=49.92 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=40.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+++|++|+.++.|++|+.++++ .+++||.+.+ +|....+.+ |-||||+|.++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~--g~v~Gv~~~~-~g~~~~i~A-----kaVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPET--GRCQGISLLY-QGQITWLRA-----GAVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCC--CEEEEEEEEE-CCeEEEEEc-----CEEEEcCCCCcc
Confidence 3569999999999999987421 3899998864 666555553 899999998753
No 51
>PRK09077 L-aspartate oxidase; Provisional
Probab=89.20 E-value=0.94 Score=48.35 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=41.9
Q ss_pred CCCCeEEEccceEEEEEeecC--CCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcch
Q 011442 129 NPQKITVLIRATVQKIVFDTS--GKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~--~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
..+|++|+.++.|++++.++. ....+++||.+.+. +|....+.+ |-||||+|.+..
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-----k~VVlATGG~~~ 208 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRA-----KFVVLATGGASK 208 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEec-----CeEEECCCCCCC
Confidence 457999999999999987541 00148999998753 466566653 899999999864
No 52
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.17 E-value=1 Score=48.67 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=39.7
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcch
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+++|+.++.|++++.+++ .+++||.+.+. .++...+. +|.||||+|.+..
T Consensus 150 ~~i~i~~~~~~~~Li~~~~---g~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDDE---GVCRGIVAQDLFTMEIESFP-----ADAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECCC---CEEEEEEEEECCCCcEEEEE-----CCEEEECCCCCcC
Confidence 3589999999999998644 48999999764 34444554 3899999998874
No 53
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=88.84 E-value=1.2 Score=48.08 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=40.4
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+|+++++++.|++|+.++ .+++||.+.+ .+|....+.+ |-||||.|.+..
T Consensus 146 ~~~i~i~~~~~v~~Li~~~----g~v~Gv~~~~~~~g~~~~i~A-----kaVIlATGG~~~ 197 (582)
T PRK09231 146 YPQIQRFDEHFVLDILVDD----GHVRGLVAMNMMEGTLVQIRA-----NAVVMATGGAGR 197 (582)
T ss_pred CCCcEEEeCeEEEEEEEeC----CEEEEEEEEEcCCCcEEEEEC-----CEEEECCCCCcC
Confidence 3689999999999999864 3899998865 3565556653 899999998763
No 54
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.54 E-value=1.1 Score=48.24 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=41.8
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+...|++|+.++.|++|+.+++.+..+++||.+.+ .+|..+.+.+ |-||||+|.+..
T Consensus 150 ~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-----kaVVLATGG~~~ 207 (583)
T PRK08205 150 CVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHA-----KAVVFATGGSGR 207 (583)
T ss_pred HHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEe-----CeEEECCCCCcc
Confidence 45678999999999999886420013899998754 3555556653 899999998763
No 55
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=88.49 E-value=1.4 Score=47.89 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=47.6
Q ss_pred hhcCCCCeEEEccceEEEEEeec-CCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHcC
Q 011442 126 ASANPQKITVLIRATVQKIVFDT-SGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 197 (485)
Q Consensus 126 ~~~~~~nl~v~~~~~V~rI~~~~-~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SG 197 (485)
..+...+.+|+.++.|++|..++ + .+++||.+.+. .++.+++.+ +.||+|||+. +.+|+...|
T Consensus 240 ~~A~~~Ga~i~~~~~V~~l~~~~~~---g~v~gV~v~d~~tg~~~~i~a-----~~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 240 CTAALAGAAVLNYAEVVSLIKDEST---GRIVGARVRDNLTGKEFDVYA-----KVVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHHHhCCcEEEeccEEEEEEEecCC---CcEEEEEEEECCCCcEEEEEe-----CEEEECCCHh-HHHHHHhcc
Confidence 34556789999999999998764 2 37889998753 455556664 9999999985 777777665
No 56
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=88.42 E-value=1.3 Score=47.63 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=41.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcch
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
..+|++++.++.|++|+.++ .+++||.+.+. +|....+.+ |-||||.|.+.-
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~----g~v~Gv~~~~~~~g~~~~i~A-----kaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDD----GRVCGLVAIEMAEGRLVTILA-----DAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeC----CEEEEEEEEEcCCCcEEEEec-----CEEEEcCCCCcc
Confidence 34689999999999999864 38999988653 566566653 899999998763
No 57
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.41 E-value=1.1 Score=48.31 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=41.7
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+...+++++.++.|++|+.+++ .+++||.+.+. +|....+. +|-||||+|.+..
T Consensus 158 ~~~~gi~i~~~~~~~~Li~~~~---g~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 212 (591)
T PRK07057 158 NVAAKTQFFVEWMALDLIRDAD---GDVLGVTALEMETGDVYILE-----AKTTLFATGGAGR 212 (591)
T ss_pred HHhcCCEEEeCcEEEEEEEcCC---CeEEEEEEEEcCCCeEEEEE-----CCeEEECCCCccc
Confidence 3457899999999999998644 38999998653 45545555 3899999998764
No 58
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=88.08 E-value=1.7 Score=44.64 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=46.5
Q ss_pred hhhhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCCh
Q 011442 124 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPK 201 (485)
Q Consensus 124 ~l~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~ 201 (485)
+...+...|.+|..++.|++|..+.++ |.+.. .+|+.. +++ |-||.|||. .+-+|++.+|+.+.
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~~~dg-------~~~~~~~~g~~~-~~a-----k~Vin~AGl-~Ad~la~~~g~~~~ 223 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEKQSDG-------VFVLNTSNGEET-LEA-----KFVINAAGL-YADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEEeCCc-------eEEEEecCCcEE-EEe-----eEEEECCch-hHHHHHHHhCCCcc
Confidence 334444459999999999999876641 33322 356554 654 999999995 89999999998763
No 59
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=87.04 E-value=1.4 Score=46.35 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=39.4
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+|++|+.++.|++|+.++ .+++||.+.+. +...++.+ +.||||+|.+..
T Consensus 141 ~~gi~i~~~~~v~~l~~~~----g~v~Gv~~~~~-~~~~~i~A-----~~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIET----GRVVGVWVWNR-ETVETCHA-----DAVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeeccC----CEEEEEEEEEC-CcEEEEEc-----CEEEECCCcccC
Confidence 3799999999999998764 38999988753 44445553 899999999864
No 60
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=86.63 E-value=2.1 Score=45.13 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=39.4
Q ss_pred CeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 132 KITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 132 nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
+++|+.++.|+.|..+++ ....|.. .+| ++.+ +.||+|||+ .|.+|+..+|++
T Consensus 231 ~v~i~~~t~V~~I~~~~~----~~~~V~T--~~G---~i~A-----~~VVvaAG~-~S~~La~~~Gi~ 283 (497)
T PTZ00383 231 KISINLNTEVLNIERSND----SLYKIHT--NRG---EIRA-----RFVVVSACG-YSLLFAQKMGYG 283 (497)
T ss_pred CEEEEeCCEEEEEEecCC----CeEEEEE--CCC---EEEe-----CEEEECcCh-hHHHHHHHhCCC
Confidence 389999999999986533 3444543 244 3554 899999997 689999999875
No 61
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=86.43 E-value=1.8 Score=46.68 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=40.1
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcc
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+..+++|+.++.|++|+.++ .+++||.+.+. +|....+.+ |.||||+|.+.
T Consensus 149 ~~~gv~i~~~~~v~~Li~~~----g~v~Gv~~~~~~~g~~~~i~A-----k~VIlATGG~~ 200 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVEN----GVFKGVTAIDLKRGEFKVFQA-----KAGIIATGGAG 200 (577)
T ss_pred hcCCCEEEECCEEEEEEEEC----CEEEEEEEEEcCCCeEEEEEC-----CcEEEcCchhc
Confidence 34689999999999998764 38999988653 555455653 89999999875
No 62
>PRK07512 L-aspartate oxidase; Provisional
Probab=85.88 E-value=1.3 Score=47.01 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=38.7
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.++++|+.++.|++|+.++ .+++||.+.+ .+...++.+ |.||||+|.+..
T Consensus 149 ~~gV~i~~~~~v~~Li~~~----g~v~Gv~~~~-~~~~~~i~A-----k~VVLATGG~~~ 198 (513)
T PRK07512 149 TPSITVLEGAEARRLLVDD----GAVAGVLAAT-AGGPVVLPA-----RAVVLATGGIGG 198 (513)
T ss_pred CCCCEEEECcChhheeecC----CEEEEEEEEe-CCeEEEEEC-----CEEEEcCCCCcC
Confidence 4689999999999998654 3899999875 344445553 899999999863
No 63
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=85.80 E-value=2.1 Score=43.83 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=42.4
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHc
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 196 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~S 196 (485)
.+.+.+++.++.|+++.++++ ++++|... ++...++.+ +.||||+|++-|..|+...
T Consensus 274 ~~~Gg~il~g~~V~~i~~~~~----~v~~V~t~--~g~~~~l~A-----D~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 274 EQLGGVMLPGDRVLRAEFEGN----RVTRIHTR--NHRDIPLRA-----DHFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHCCCEEEECcEEEEEEeeCC----eEEEEEec--CCccceEEC-----CEEEEccCCCcCHHHHhhc
Confidence 445889999999999998764 78887653 332334553 8899999999888886653
No 64
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=85.66 E-value=2.1 Score=46.42 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=38.7
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcc
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
.+|++|+.++.|++|+.+++ +++||.+.+ .+|....+.+ |.||||+|.+.
T Consensus 145 ~ggV~i~~~~~v~~Li~~~g----~v~Gv~~~~~~~g~~~~i~A-----kaVILATGG~~ 195 (608)
T PRK06854 145 ALGDNVLNRVFITDLLVDDN----RIAGAVGFSVRENKFYVFKA-----KAVIVATGGAA 195 (608)
T ss_pred cCCCEEEeCCEEEEEEEeCC----EEEEEEEEEccCCcEEEEEC-----CEEEECCCchh
Confidence 45699999999999987653 899998654 3455555653 89999999875
No 65
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=84.21 E-value=2.4 Score=43.88 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=41.4
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
.+.+.+.+|++++.|++|+.+.++ .+++||.... ++ .++.+ |.||||+|.+...+=++
T Consensus 132 ~a~~~Gv~i~~~~~v~~l~~~~~~--g~v~gv~~~~-~~--~~i~a-----k~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 132 SAERLGVEIRYGIAVDRIPPEAFD--GAHDGPLTTV-GT--HRITT-----QALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHcCCEEEeCCEEEEEEecCCC--CeEEEEEEcC-Cc--EEEEc-----CEEEEcCCCcccCHHHH
Confidence 345678999999999999876311 3789988632 22 34543 89999999887755444
No 66
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=83.65 E-value=2.9 Score=45.31 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=39.5
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcc
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
.+.+|+.++.|++|+.++++ ..+++||.+.+ .+|+.+.+.+ |.||||+|.+.
T Consensus 139 ~~~~i~~~~~v~~Ll~d~~~-~GrV~Gv~~~~~~~g~~~~i~A-----kaVVLATGG~~ 191 (614)
T TIGR02061 139 ALGDIFERIFIVKLLLDKNT-PNRIAGAVGFNVRANEVHVFKA-----KTVIVAAGGAV 191 (614)
T ss_pred CCCeEEcccEEEEEEecCCC-CCeEEEEEEEEeCCCcEEEEEC-----CEEEECCCccc
Confidence 35799999999999986421 13899998865 3566666663 89999999885
No 67
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=83.23 E-value=4.5 Score=42.57 Aligned_cols=64 Identities=19% Similarity=0.257 Sum_probs=42.8
Q ss_pred hhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 126 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 126 ~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
..+...+++|+.++.|+.|..++++ .. .|...+ ..|...++.+ +.||+|||+ .+.+|+...|+.
T Consensus 186 ~~a~~~Gv~i~~~t~V~~i~~~~~~---~v-~v~~~~~~~g~~~~i~A-----~~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 186 GYLVQNGTTIRFGHEVRNLKRQSDG---SW-TVTVKNTRTGGKRTLNT-----RFVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCC---eE-EEEEeeccCCceEEEEC-----CEEEECCCc-chHHHHHHcCCC
Confidence 3444568999999999999764431 22 233322 2344445653 899999997 678888888775
No 68
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.16 E-value=3 Score=47.50 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=39.9
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcc
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
..++++.+++.+.+|+.++ ++++||.+.+. +|+.+.+.+ |-||||+|.++
T Consensus 155 ~~~i~~~~~~~~~~Li~~~----g~v~Gv~~~~~~~g~~~~i~A-----kaVILATGG~g 205 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEG----GRAVGAAALNTRTGEFVTVGA-----KAVILATGPCG 205 (897)
T ss_pred cCCcEEEeceeeEEEEeeC----CEEEEEEEEecCCCcEEEEEC-----CEEEECCCccc
Confidence 3589999999999998764 38999998653 576666663 89999999876
No 69
>PRK07804 L-aspartate oxidase; Provisional
Probab=82.52 E-value=3.1 Score=44.41 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=39.5
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC----CCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE----NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~----~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.+++|+.++.|++|+.+++ .+++||.+.+. .+...++.+ |.||||+|.+..
T Consensus 154 ~~~~gV~i~~~~~v~~Li~~~~---g~v~Gv~~~~~~~~~~~g~~~i~A-----k~VIlATGG~~~ 211 (541)
T PRK07804 154 VRADPLDIREHALALDLLTDGT---GAVAGVTLHVLGEGSPDGVGAVHA-----PAVVLATGGLGQ 211 (541)
T ss_pred HHhCCCEEEECeEeeeeEEcCC---CeEEEEEEEeccCCCCCcEEEEEc-----CeEEECCCCCCC
Confidence 3445699999999999998653 38999988631 222344553 899999998763
No 70
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=81.56 E-value=5.3 Score=42.11 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=40.6
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
++++|+.++.|+.|..+++ .++ .|...+ ..|...++.+ +.||+|||+ .+.+|+..+|+.
T Consensus 197 Ggv~i~~~teV~~I~~~~d---g~~-~v~~~~~~~G~~~~i~A-----~~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 197 GNFELQLGHEVRDIKRNDD---GSW-TVTVKDLKTGEKRTVRA-----KFVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred CCeEEEeCCEEEEEEECCC---CCE-EEEEEEcCCCceEEEEc-----CEEEECCCc-chHHHHHHcCCC
Confidence 4599999999999986543 122 243332 2344335654 899999998 678888888875
No 71
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=81.50 E-value=1.7 Score=39.40 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=34.9
Q ss_pred hhhh-cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcC
Q 011442 124 LLAS-ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 197 (485)
Q Consensus 124 ~l~~-~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SG 197 (485)
||.. +++-+++|..+++|++|..+++ + --|++ .++ .++.+ +.||||.|....|+++..-|
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~----~-w~v~~--~~~--~~~~a-----~~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGD----G-WTVTT--RDG--RTIRA-----DRVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETT----T-EEEEE--TTS---EEEE-----EEEEE---SSCSB---S-TT
T ss_pred HHHHHHhhcCcccccCCEEEEEEEecc----E-EEEEE--Eec--ceeee-----eeEEEeeeccCCCCcccccc
Confidence 5543 4556888999999999998864 2 33444 344 34554 99999999999999887654
No 72
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=81.09 E-value=3.9 Score=43.01 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=55.7
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChH---H
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKA---E 203 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~---~ 203 (485)
+...+.+|++.+.|++++.++ . +.||++.|. .|+++.+++ +.||-|||. -+-+|+...+..++. .
T Consensus 174 A~~~Ga~il~~~~v~~~~re~----~-v~gV~~~D~~tg~~~~ira-----~~VVNAaGp-W~d~i~~~~~~~~~~~~~v 242 (532)
T COG0578 174 AAEHGAEILTYTRVESLRREG----G-VWGVEVEDRETGETYEIRA-----RAVVNAAGP-WVDEILEMAGLEQSPHIGV 242 (532)
T ss_pred HHhcccchhhcceeeeeeecC----C-EEEEEEEecCCCcEEEEEc-----CEEEECCCc-cHHHHHHhhcccCCCCccc
Confidence 445689999999999998765 2 999999985 478888885 999999997 567778777655432 2
Q ss_pred hhhcCCceeec
Q 011442 204 LEKLNISVVLD 214 (485)
Q Consensus 204 L~~~GI~~v~d 214 (485)
--..|+-+|++
T Consensus 243 r~skGsHlVv~ 253 (532)
T COG0578 243 RPSKGSHLVVD 253 (532)
T ss_pred eeccceEEEec
Confidence 22345544443
No 73
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=78.43 E-value=4.5 Score=41.66 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=39.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
..+.+.+|+++++|+++..+++ ++++|.. .+|...++.+ +.||||+|.+.+.-|
T Consensus 269 l~~~Gv~I~~g~~V~~v~~~~~----~V~~v~~--~~g~~~~i~A-----D~VVLAtGrf~s~GL 322 (422)
T PRK05329 269 FERLGGRIMPGDEVLGAEFEGG----RVTAVWT--RNHGDIPLRA-----RHFVLATGSFFSGGL 322 (422)
T ss_pred HHhCCCEEEeCCEEEEEEEeCC----EEEEEEe--eCCceEEEEC-----CEEEEeCCCcccCce
Confidence 3456899999999999987643 5666652 3565556664 899999998755544
No 74
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=78.40 E-value=8.5 Score=40.56 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=49.1
Q ss_pred EEcCCCccccHHH----hhhhc-CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEec
Q 011442 111 IFDRFGRRHTAAE----LLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSC 184 (485)
Q Consensus 111 ~~~~~g~R~sa~~----~l~~~-~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaA 184 (485)
+.++++...+... ++..+ ...+++|+.++.|+.|..++++ ..+ |.+.+ ..|...++.+ +.||+||
T Consensus 173 l~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~---~w~-v~v~~t~~g~~~~i~A-----d~VV~AA 243 (497)
T PRK13339 173 SKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDG---GWE-VTVKDRNTGEKREQVA-----DYVFIGA 243 (497)
T ss_pred EECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCC---CEE-EEEEecCCCceEEEEc-----CEEEECC
Confidence 3345555444432 33334 3468999999999999765221 222 33322 2343334554 8999999
Q ss_pred CCcchHHHHHHcCCC
Q 011442 185 GAIGTPQMLKLSGVG 199 (485)
Q Consensus 185 Gai~TP~LLl~SGIG 199 (485)
|+ .+-+|+..+|+.
T Consensus 244 Ga-wS~~La~~~Gi~ 257 (497)
T PRK13339 244 GG-GAIPLLQKSGIP 257 (497)
T ss_pred Cc-chHHHHHHcCCC
Confidence 98 778889988875
No 75
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=78.13 E-value=4.3 Score=42.77 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=41.1
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
.+.+.+.+|++++.|++|+.+++ ++.||... +|.. +.+ +.||+++|...|=+.|+
T Consensus 238 ~~~~~G~~i~~~~~V~~I~~~~~----~~~gv~~~--~g~~--~~a-----d~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 238 GLEKHGGQIRYRARVTKIILENG----KAVGVKLA--DGEK--IYA-----KRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHCCCEEEeCCeeeEEEecCC----cEEEEEeC--CCCE--EEc-----CEEEECCChHHHHHHhC
Confidence 34556899999999999988753 78899874 4543 343 88999999877765454
No 76
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=77.94 E-value=5.4 Score=40.42 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=35.0
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
..+|++|+ +.+|+.|..+++ ++.||... +|. .+.+ +.||||+|++..
T Consensus 107 ~~~nl~i~-~~~V~~l~~e~~----~v~GV~~~--~g~--~~~a-----~~vVlaTGtfl~ 153 (392)
T PF01134_consen 107 SHPNLTII-QGEVTDLIVENG----KVKGVVTK--DGE--EIEA-----DAVVLATGTFLN 153 (392)
T ss_dssp TSTTEEEE-ES-EEEEEECTT----EEEEEEET--TSE--EEEE-----CEEEE-TTTGBT
T ss_pred cCCCeEEE-EcccceEEecCC----eEEEEEeC--CCC--EEec-----CEEEEecccccC
Confidence 56899997 689999998764 99999874 564 3443 999999999533
No 77
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=77.64 E-value=4.9 Score=38.37 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=38.1
Q ss_pred hhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC----CC---CeeEEEecCCCCceEEEecCC
Q 011442 126 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE----NG---NQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 126 ~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~----~g---~~~~v~a~~~a~keVILaAGa 186 (485)
..+...+++|+.++.|+.|..+++ .++.||.+... .| ...++.+ |-||+|+|.
T Consensus 112 ~~A~~~Gv~I~~~t~V~dl~~~~~---g~V~Gvv~~~~~v~~~g~~~~~~~i~A-----k~VI~ATG~ 171 (257)
T PRK04176 112 AAAIDAGAKIFNGVSVEDVILRED---PRVAGVVINWTPVEMAGLHVDPLTIEA-----KAVVDATGH 171 (257)
T ss_pred HHHHHcCCEEEcCceeceeeEeCC---CcEEEEEEccccccccCCCCCcEEEEc-----CEEEEEeCC
Confidence 344456999999999999988654 37899987431 12 2345654 999999995
No 78
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=74.65 E-value=12 Score=37.82 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCCCCCCCCccCCCCceeeeeeEEcCCCccccHHH-hhhhcCCCCeEEEccceEEEEEeecCCCCCeEEEE
Q 011442 80 KALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGV 158 (485)
Q Consensus 80 ~~~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~R~sa~~-~l~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV 158 (485)
+.|.+-++.+|++-+. ...| .++|....-++-.. ++...+..|++|++++.|..|..++. +.
T Consensus 82 ~d~i~~~e~~Gi~~~e-----~~~G-----r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-------~f 144 (408)
T COG2081 82 EDFIDWVEGLGIALKE-----EDLG-----RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-------GF 144 (408)
T ss_pred HHHHHHHHhcCCeeEE-----ccCc-----eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-------eE
Confidence 4566777788875221 1112 33333222122222 55556778999999999999986542 33
Q ss_pred EEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 159 IFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 159 ~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
.+...+|. ++++ +.+|||.|..--|+
T Consensus 145 ~l~t~~g~--~i~~-----d~lilAtGG~S~P~ 170 (408)
T COG2081 145 RLDTSSGE--TVKC-----DSLILATGGKSWPK 170 (408)
T ss_pred EEEcCCCC--EEEc-----cEEEEecCCcCCCC
Confidence 34444565 4554 89999999877775
No 79
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=74.08 E-value=6.7 Score=41.30 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=40.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
...+.+|++++.|++|+.+++ +++||...+. .|...++.+ +.||+++-.-.+.+||
T Consensus 243 ~~~G~~i~~~~~V~~I~~~~~----~~~gv~~~~~~~~~~~~~~a-----d~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 243 KRDGGNLLTGQRVTAIHTKGG----RAGWVVVVDSRKQEDLNVKA-----DDVVANLPPQSLLELL 299 (492)
T ss_pred HhcCCEEeCCceEEEEEEeCC----eEEEEEEecCCCCceEEEEC-----CEEEECCCHHHHHHhc
Confidence 446889999999999998763 7889987642 122234543 8899998886666644
No 80
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=73.97 E-value=7.4 Score=41.05 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=41.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 195 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~ 195 (485)
+.+.+.+|++++.|++|..+++ ++++|+.. +|+. +.+ +.||+|++...+-..|+-
T Consensus 229 ~~~~G~~i~~~~~V~~i~~~~~----~~~~V~~~--~g~~--~~a-----d~VI~a~~~~~~~~~l~~ 283 (502)
T TIGR02734 229 AEDLGGELRLNAEVIRIETEGG----RATAVHLA--DGER--LDA-----DAVVSNADLHHTYRRLLP 283 (502)
T ss_pred HHHCCCEEEECCeEEEEEeeCC----EEEEEEEC--CCCE--EEC-----CEEEECCcHHHHHHHhcC
Confidence 3455899999999999998753 78888774 4543 343 889999998888776653
No 81
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=73.18 E-value=5.6 Score=39.18 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=37.0
Q ss_pred hhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 126 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 126 ~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
..+...+++++.++.|+.|..+++ ++++|.. .+| ++.+ +.||+|+|+ .|++|
T Consensus 145 ~~~~~~g~~~~~~~~v~~i~~~~~----~~~~v~~--~~g---~~~a-----~~vV~a~G~-~~~~l 196 (337)
T TIGR02352 145 KALEKLGVEIIEHTEVQHIEIRGE----KVTAIVT--PSG---DVQA-----DQVVLAAGA-WAGEL 196 (337)
T ss_pred HHHHHcCCEEEccceEEEEEeeCC----EEEEEEc--CCC---EEEC-----CEEEEcCCh-hhhhc
Confidence 344556899999999999986543 6777764 234 3553 899999997 45543
No 82
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=71.21 E-value=9.9 Score=38.79 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=38.4
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcC
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 197 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SG 197 (485)
.+...+.+++.++.|+.|..+++ .++.+|... +| ++.+ +.||+|||+. ++.|+...|
T Consensus 192 ~a~~~Gv~~~~~~~V~~i~~~~~---~~~~~v~t~--~g---~i~a-----~~vVvaagg~-~~~l~~~~g 248 (407)
T TIGR01373 192 GADRRGVDIIQNCEVTGFIRRDG---GRVIGVETT--RG---FIGA-----KKVGVAVAGH-SSVVAAMAG 248 (407)
T ss_pred HHHHCCCEEEeCCEEEEEEEcCC---CcEEEEEeC--Cc---eEEC-----CEEEECCChh-hHHHHHHcC
Confidence 34556899999999999975433 256677653 44 3443 8899999984 555555443
No 83
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=70.43 E-value=14 Score=37.53 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=39.4
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
.+...+.+++.++.|++|..+++ .+ .|+. .+| ++.+ +.||+|+|+ .++.++...|+.
T Consensus 158 ~~~~~Gv~i~~~~~V~~i~~~~~----~~-~V~~--~~g---~i~a-----d~vV~A~G~-~s~~l~~~~g~~ 214 (393)
T PRK11728 158 LIQARGGEIRLGAEVTALDEHAN----GV-VVRT--TQG---EYEA-----RTLINCAGL-MSDRLAKMAGLE 214 (393)
T ss_pred HHHhCCCEEEcCCEEEEEEecCC----eE-EEEE--CCC---EEEe-----CEEEECCCc-chHHHHHHhCCC
Confidence 34456899999999999876542 22 3433 234 3543 899999997 678888776653
No 84
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=69.99 E-value=16 Score=38.07 Aligned_cols=58 Identities=21% Similarity=0.399 Sum_probs=47.7
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
++..+++...+++|+.|.++.+++.++|+++++. .+|+..++.. ...+-||+.-|++-
T Consensus 217 L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~-~~g~~~~i~l--~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 217 LKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE-QDGKEETIDL--GPDDLVFVTNGSMT 274 (500)
T ss_pred HHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE-cCCCeeEEEe--CCCCEEEEECCccc
Confidence 4567999999999999999876666789999987 4777777665 47889999999863
No 85
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=68.97 E-value=11 Score=39.76 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=41.8
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
.+...+.+++.++.|+.|..++ ...+|.+.+..|++.++.+ +.||.|+|+. +.+|+.
T Consensus 164 ~a~~~Ga~i~~~~~V~~i~~~~-----~~~~v~~~~~~g~~~~i~a-----~~VVnAaG~w-a~~l~~ 220 (502)
T PRK13369 164 DAAERGATILTRTRCVSARREG-----GLWRVETRDADGETRTVRA-----RALVNAAGPW-VTDVIH 220 (502)
T ss_pred HHHHCCCEEecCcEEEEEEEcC-----CEEEEEEEeCCCCEEEEEe-----cEEEECCCcc-HHHHHh
Confidence 3455789999999999998653 2456776654466667764 9999999974 667665
No 86
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=68.90 E-value=1.6 Score=45.17 Aligned_cols=57 Identities=21% Similarity=0.365 Sum_probs=0.0
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
...|++|+.++.|..++.+++ +++||.+.+..| ..+++| +.||-|.| .-.|+-++|+
T Consensus 101 ~e~gv~v~~~t~v~~v~~~~~----~i~~V~~~~~~g-~~~i~A-----~~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 101 AEAGVEVLLGTRVVDVIRDGG----RITGVIVETKSG-RKEIRA-----KVFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc----cccccccccccc-cccccc-----cccccccc---cccccccccc
Confidence 457999999999999998763 899999986555 666764 99999999 3577777774
No 87
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=68.69 E-value=21 Score=36.12 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=45.1
Q ss_pred hhhhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHH
Q 011442 124 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAE 203 (485)
Q Consensus 124 ~l~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~ 203 (485)
++..+++.|++|++++.|+.| +++ . .+|.+. .+. ..+.+ +.||||+|..-.|++ =-+|-| -..
T Consensus 92 L~~~l~~~gV~i~~~~~V~~i--~~~----~-~~v~~~--~~~-~~~~a-----~~vIlAtGG~s~p~~-Gs~g~g-y~l 154 (376)
T TIGR03862 92 WLKRLAEQGVQFHTRHRWIGW--QGG----T-LRFETP--DGQ-STIEA-----DAVVLALGGASWSQL-GSDGAW-QQV 154 (376)
T ss_pred HHHHHHHCCCEEEeCCEEEEE--eCC----c-EEEEEC--CCc-eEEec-----CEEEEcCCCcccccc-CCCcHH-HHH
Confidence 334456789999999999998 322 2 345442 222 23443 999999999888864 111211 123
Q ss_pred hhhcCCceeecCc
Q 011442 204 LEKLNISVVLDNA 216 (485)
Q Consensus 204 L~~~GI~~v~dlp 216 (485)
++++|+.++.-.|
T Consensus 155 a~~lGh~i~~~~P 167 (376)
T TIGR03862 155 LDQRGVSVAPFAP 167 (376)
T ss_pred HHHCCCcccCCcC
Confidence 4456665554444
No 88
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=68.45 E-value=10 Score=39.44 Aligned_cols=49 Identities=10% Similarity=0.206 Sum_probs=34.6
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCe-eEEEecCCCCceEEEecCC
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQ-HQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~-~~v~a~~~a~keVILaAGa 186 (485)
..+.+|.+++.|++|..+++ .+++||++.+..|++ +++. .+.||+++..
T Consensus 225 ~~g~~i~l~~~V~~I~~~~~---~~v~~v~~~~~~~~~~~~~~-----a~~VI~a~p~ 274 (453)
T TIGR02731 225 SRGGEVRLNSRLKEIVLNED---GSVKHFVLADGEGQRRFEVT-----ADAYVSAMPV 274 (453)
T ss_pred hcCCEEeCCCeeEEEEECCC---CCEEEEEEecCCCCceeEEE-----CCEEEEcCCH
Confidence 34679999999999987554 378899986432322 2344 3889998865
No 89
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=68.29 E-value=10 Score=37.92 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=36.0
Q ss_pred hhhhc-CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 124 LLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 124 ~l~~~-~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
|+.++ ++-.-.+..+++|++|..+.+++. ...-|+..+.+|...++.+ |.|||+.| .+|.|
T Consensus 100 Yl~Wva~~~~~~v~~~~~V~~I~~~~~~~~-~~~~V~~~~~~g~~~~~~a-----r~vVla~G--~~P~i 161 (341)
T PF13434_consen 100 YLRWVAEQLDNQVRYGSEVTSIEPDDDGDE-DLFRVTTRDSDGDGETYRA-----RNVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHCCGTTTEEESEEEEEEEEEEETTE-EEEEEEEEETTS-EEEEEE-----SEEEE------EE--
T ss_pred HHHHHHHhCCCceEECCEEEEEEEecCCCc-cEEEEEEeecCCCeeEEEe-----CeEEECcC--CCCCC
Confidence 66543 333334778999999999875322 3455666555677777775 89999999 66653
No 90
>PRK06185 hypothetical protein; Provisional
Probab=67.14 E-value=17 Score=37.03 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=41.7
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
..++++++.+++|+.|..+++ ++++|.+...+|+ .++.+ +-||.|.|+- |. +-...||.
T Consensus 120 ~~~~v~i~~~~~v~~~~~~~~----~v~~v~~~~~~g~-~~i~a-----~~vI~AdG~~-S~-vr~~~gi~ 178 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEEGG----RVTGVRARTPDGP-GEIRA-----DLVVGADGRH-SR-VRALAGLE 178 (407)
T ss_pred hCCCcEEEeCCEEEEEEEeCC----EEEEEEEEcCCCc-EEEEe-----CEEEECCCCc-hH-HHHHcCCC
Confidence 346899999999999987753 7788887653443 45664 8999999974 43 44444554
No 91
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=67.12 E-value=14 Score=37.67 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=36.4
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
.+.+.+.+|+.++.|++|..+++ ++++|... ++ ++.+ +.||+|+|+. +..|+.
T Consensus 210 ~~~~~G~~i~~~~~V~~i~~~~~----~~~~v~t~--~~---~~~a-----~~VV~a~G~~-~~~l~~ 262 (416)
T PRK00711 210 MAEQLGVKFRFNTPVDGLLVEGG----RITGVQTG--GG---VITA-----DAYVVALGSY-STALLK 262 (416)
T ss_pred HHHHCCCEEEcCCEEEEEEecCC----EEEEEEeC--Cc---EEeC-----CEEEECCCcc-hHHHHH
Confidence 34556899999999999986543 56666542 33 3443 8999999984 455543
No 92
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=66.88 E-value=14 Score=39.23 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=41.0
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 195 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~ 195 (485)
+...+++++.++.|+.|..++ ...+|.+.+. +|...++.+ +.||+|||+. +.+|+..
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~~-----~~~~v~~~~~~~g~~~~i~a-----~~VVnAaG~w-a~~l~~~ 222 (508)
T PRK12266 165 AAERGAEILTRTRVVSARREN-----GLWHVTLEDTATGKRYTVRA-----RALVNAAGPW-VKQFLDD 222 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEeC-----CEEEEEEEEcCCCCEEEEEc-----CEEEECCCcc-HHHHHhh
Confidence 455699999999999987653 2346776642 455566764 9999999974 6666643
No 93
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=65.78 E-value=8.2 Score=39.36 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=32.1
Q ss_pred ccCCCCeeeccCCceEe-ecccCCCCCCCCchhHHHHHH----HHHHHHHHHHhhh
Q 011442 430 VVSTEYKVLGIDRLRVV-DGSTYDESPGTNPQGTVLMMG----RYMGVKILRQRLG 480 (485)
Q Consensus 430 VVD~~~rV~G~~nL~Vv-DaSv~P~~~~~np~~ti~alA----~r~A~~i~~~~~~ 480 (485)
+||+++++.|.+|+|++ |++.++.. +|.-++.=+| +.+|..|.++..+
T Consensus 281 ~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 281 VVNPTLQVPGHPDIFAAGDCAAVIDP---RPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred EeCCCcccCCCCCeEEEeccccCCCC---CCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999987 67767755 4444444444 4445555444433
No 94
>PLN02661 Putative thiazole synthesis
Probab=65.32 E-value=15 Score=36.73 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=36.1
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe----CCCC------eeEEEecCCCCceEEEecCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD----ENGN------QHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~----~~g~------~~~v~a~~~a~keVILaAGa 186 (485)
.++|++|+.++.|+.|+.+++ ++.||.+.. .++. ...+.+ |.||||+|.
T Consensus 184 ~~~gVkI~~~t~V~DLI~~~g----rVaGVVvnw~~v~~~~~~~s~~dp~~I~A-----kaVVlATGh 242 (357)
T PLN02661 184 ARPNVKLFNAVAAEDLIVKGD----RVGGVVTNWALVAQNHDTQSCMDPNVMEA-----KVVVSSCGH 242 (357)
T ss_pred hcCCCEEEeCeEeeeEEecCC----EEEEEEeecchhhhccCCCCccceeEEEC-----CEEEEcCCC
Confidence 468999999999999998753 899998521 1211 134553 999999994
No 95
>PRK07208 hypothetical protein; Provisional
Probab=64.10 E-value=16 Score=38.22 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=37.9
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
..+.+|++++.|++|..+++ +.+++|.+.+.+|...++.+ +.||++.-.-.+.++|
T Consensus 230 ~~g~~i~~~~~V~~I~~~~~---~~v~~~~~~~~~g~~~~~~a-----d~VI~a~p~~~l~~~l 285 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDGD---GRIAVVVVNDTDGTEETVTA-----DQVISSMPLRELVAAL 285 (479)
T ss_pred HcCCEEEeCCEEEEEEEcCC---cEEEEEEEEcCCCCEEEEEc-----CEEEECCCHHHHHHhc
Confidence 35789999999999998764 34566665544565555553 7888877655455444
No 96
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=63.71 E-value=15 Score=38.60 Aligned_cols=59 Identities=17% Similarity=0.374 Sum_probs=40.5
Q ss_pred CCCCeEEEccceEEEEEeecCCCCC-eEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRP-KAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~-~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
.+.+.+|++++.|++|+.++.++.. ++++|.+.+.++ ..++.+ +.||+|..+-.+.+||
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~~a-----D~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVIKA-----DAYVAACDVPGIKRLL 289 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEEEC-----CEEEECCChHHHHhhC
Confidence 3468899999999999986421112 488888853222 123443 8899999988777776
No 97
>PLN02487 zeta-carotene desaturase
Probab=61.99 E-value=15 Score=39.51 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=40.8
Q ss_pred CCCCeEEEccceEEEEEeecC-CCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTS-GKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~-~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
.+.+.+|++++.|++|+++.+ ++..+++||++.. ++....+.+ +.||++++.-...+||
T Consensus 306 ~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~~a-----D~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 306 TDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIVKA-----DAYVAACDVPGIKRLL 365 (569)
T ss_pred HHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEEEC-----CEEEECCCHHHHHHhC
Confidence 456889999999999999853 2223689999852 333333442 8899988876555554
No 98
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=61.39 E-value=25 Score=35.83 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=36.4
Q ss_pred hhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCC-eeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 126 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGN-QHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 126 ~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~-~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
..+.+.+++|+.++.|++|..+++ .+ .|.+.+.++. ..++.+ +.||+|+|+ .++.|+.
T Consensus 205 ~~a~~~G~~i~~~~~V~~i~~~~~----~~-~v~~~~~~~~~~~~i~a-----~~vV~a~G~-~s~~l~~ 263 (410)
T PRK12409 205 AACARLGVQFRYGQEVTSIKTDGG----GV-VLTVQPSAEHPSRTLEF-----DGVVVCAGV-GSRALAA 263 (410)
T ss_pred HHHHhCCCEEEcCCEEEEEEEeCC----EE-EEEEEcCCCCccceEec-----CEEEECCCc-ChHHHHH
Confidence 344566899999999999976542 33 2333322110 224543 999999997 4556554
No 99
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=61.22 E-value=14 Score=37.85 Aligned_cols=78 Identities=23% Similarity=0.269 Sum_probs=41.6
Q ss_pred hhhhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHH
Q 011442 124 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAE 203 (485)
Q Consensus 124 ~l~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~ 203 (485)
++..+.+.+++|.++++|..|..+++ .+..|+.. ++. .+.+ +.||||+|..--|++ =-+|-| -..
T Consensus 115 L~~~l~~~gv~i~~~~~V~~i~~~~~----~~f~v~~~--~~~--~~~a-----~~vILAtGG~S~p~~-GS~G~g-y~~ 179 (409)
T PF03486_consen 115 LLEELKRLGVEIHFNTRVKSIEKKED----GVFGVKTK--NGG--EYEA-----DAVILATGGKSYPKT-GSDGSG-YRI 179 (409)
T ss_dssp HHHHHHHHT-EEE-S--EEEEEEETT----EEEEEEET--TTE--EEEE-----SEEEE----SSSGGG-T-SSHH-HHH
T ss_pred HHHHHHHcCCEEEeCCEeeeeeecCC----ceeEeecc--Ccc--cccC-----CEEEEecCCCCcccc-CCCcHH-HHH
Confidence 33445567999999999999988764 66777762 332 4444 999999998887862 111211 123
Q ss_pred hhhcCCceeecCc
Q 011442 204 LEKLNISVVLDNA 216 (485)
Q Consensus 204 L~~~GI~~v~dlp 216 (485)
++++|+.++.-.|
T Consensus 180 a~~lGh~i~~~~P 192 (409)
T PF03486_consen 180 AKKLGHTITPPYP 192 (409)
T ss_dssp HHHTT--EEEEEE
T ss_pred HHHCCCcEecCCC
Confidence 5567766655444
No 100
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.44 E-value=24 Score=34.97 Aligned_cols=58 Identities=22% Similarity=0.392 Sum_probs=47.1
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHc
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 196 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~S 196 (485)
-+|++|+++++-+.|.=|++ +++|.+|.++ .|..+.+.. .-|++--|-+-+..+|.-+
T Consensus 402 l~Nv~ii~na~Ttei~Gdg~----kV~Gl~Y~dr~sge~~~l~L-----eGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 402 LPNVTIITNAQTTEVKGDGD----KVTGLEYRDRVSGEEHHLEL-----EGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred CCCcEEEecceeeEEecCCc----eecceEEEeccCCceeEEEe-----eeeEEEEecccChhHhhch
Confidence 48999999999999976543 8999999986 477777765 6788888888888888754
No 101
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=59.74 E-value=9.4 Score=39.06 Aligned_cols=56 Identities=29% Similarity=0.364 Sum_probs=42.1
Q ss_pred hhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 126 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 126 ~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
+-+.+.+.+|+|+++|.+|+.|.+ +|.||.+. +|+. ++ +|.||=-|+-..|=.=|+
T Consensus 272 ~~~~~~GaeI~tka~Vq~Illd~g----ka~GV~L~--dG~e--v~-----sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 272 EGAKRAGAEIFTKATVQSILLDSG----KAVGVRLA--DGTE--VR-----SKIVVSNATPWDTFEKLL 327 (561)
T ss_pred HHHHhccceeeehhhhhheeccCC----eEEEEEec--CCcE--EE-----eeeeecCCchHHHHHHhC
Confidence 345678999999999999999873 89999996 6754 33 277777777776663333
No 102
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=57.68 E-value=23 Score=35.57 Aligned_cols=50 Identities=24% Similarity=0.336 Sum_probs=33.6
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
+.+.+++++.+++|++|..+++ ++.+...+| ++.+ +.||+|+|+. ++.|+
T Consensus 159 ~~~~gv~i~~~~~v~~i~~~~~-------~~~v~~~~g---~~~a-----~~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEADGD-------GVTVTTADG---TYEA-----KKLVVSAGAW-VKDLL 208 (376)
T ss_pred HHHCCCEEECCCEEEEEEeeCC-------eEEEEeCCC---EEEe-----eEEEEecCcc-hhhhc
Confidence 3456899999999999986542 233333344 3443 8999999974 44443
No 103
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=57.47 E-value=9.5 Score=39.27 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=42.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
..+||+|+-++.+.=|+.+++++..++.||... +|. .|++ +-|||..|++-+.+|-
T Consensus 136 st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~--dgt--~v~a-----~~VilTTGTFL~~~I~ 191 (679)
T KOG2311|consen 136 STPNLEIREGAVADLIVEDPDDGHCVVSGVVLV--DGT--VVYA-----ESVILTTGTFLRGQIN 191 (679)
T ss_pred cCCcchhhhhhhhheeeccCCCCceEEEEEEEe--cCc--Eecc-----ceEEEeeccceeeEEe
Confidence 468999999888777777766667789999986 564 3443 8999999998766653
No 104
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=57.25 E-value=24 Score=38.15 Aligned_cols=46 Identities=20% Similarity=0.455 Sum_probs=34.7
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+.+|++|+ ++.|+.|..+++ +++||... +|. .+.+ +.||+|+|++-
T Consensus 112 ~~~nV~I~-q~~V~~Li~e~g----rV~GV~t~--dG~--~I~A-----k~VIlATGTFL 157 (618)
T PRK05192 112 NQPNLDLF-QGEVEDLIVENG----RVVGVVTQ--DGL--EFRA-----KAVVLTTGTFL 157 (618)
T ss_pred cCCCcEEE-EeEEEEEEecCC----EEEEEEEC--CCC--EEEC-----CEEEEeeCcch
Confidence 45799985 678999987753 89999874 453 4553 99999999863
No 105
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=56.53 E-value=45 Score=31.95 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=40.8
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHc
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 196 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~S 196 (485)
.+++++++++|++|.-+ .++.+|++.+. .|+..++.+ +.||+|.|....+.+|..+
T Consensus 190 ~gv~~~~~~~v~~i~~~-----~~~~~v~~~~~~~g~~~~i~~-----D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD-----NKVEGVKIKNTVTGEEEELKV-----DGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc-----CcEEEEEEEecCCCceEEEEc-----cEEEEeeCCCCChHHHHHh
Confidence 49999999999998632 25777877542 455566654 8999999977666666554
No 106
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=56.32 E-value=30 Score=34.70 Aligned_cols=54 Identities=22% Similarity=0.191 Sum_probs=35.0
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 197 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SG 197 (485)
+.+.+.+++.+++|++|..+++ .+ .|.. .++ ++.+ +.||+|+|+. +++|+..-|
T Consensus 155 ~~~~g~~~~~~~~V~~i~~~~~----~~-~v~~--~~~---~i~a-----~~vV~aaG~~-~~~l~~~~g 208 (380)
T TIGR01377 155 AEAHGATVRDGTKVVEIEPTEL----LV-TVKT--TKG---SYQA-----NKLVVTAGAW-TSKLLSPLG 208 (380)
T ss_pred HHHcCCEEECCCeEEEEEecCC----eE-EEEe--CCC---EEEe-----CEEEEecCcc-hHHHhhhcc
Confidence 3456899999999999976532 33 2443 233 3443 8999999985 445554433
No 107
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=55.65 E-value=39 Score=35.89 Aligned_cols=58 Identities=24% Similarity=0.412 Sum_probs=44.5
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHc
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 196 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~S 196 (485)
..|+++++++.|++|.-++ .++++|++.+. +|...++.+ +.|+++.|..-.+.+|..+
T Consensus 399 ~~gI~i~~~~~v~~i~~~~----g~v~~v~~~~~~~g~~~~i~~-----D~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGDG----DKVTGLTYKDRTTGEEHHLEL-----EGVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCCcEEEECcEEEEEEcCC----CcEEEEEEEECCCCcEEEEEc-----CEEEEeECCccCchHHhhh
Confidence 4699999999999997442 37889998753 455556664 8999999998877777544
No 108
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=53.90 E-value=34 Score=34.56 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=33.1
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
.+.+ +++|+.++.|+.|..+++ + .+|. ..+|.. +.+ +.||+|+|+- ++.|
T Consensus 144 ~~~~-G~~i~~~~~V~~i~~~~~----~-~~v~--t~~g~~--~~a-----~~vV~a~G~~-~~~l 193 (381)
T TIGR03197 144 HAGI-RLTLHFNTEITSLERDGE----G-WQLL--DANGEV--IAA-----SVVVLANGAQ-AGQL 193 (381)
T ss_pred ccCC-CcEEEeCCEEEEEEEcCC----e-EEEE--eCCCCE--EEc-----CEEEEcCCcc-cccc
Confidence 3456 899999999999986532 3 3343 335542 343 9999999964 4443
No 109
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=53.79 E-value=5 Score=42.81 Aligned_cols=110 Identities=31% Similarity=0.348 Sum_probs=69.0
Q ss_pred CceeeeeeEEcCCCccccHHHhhhhcCCCCeEEEccceEEEEEeecC----CCCCeEEEEEEEeCCCCeeEEEecCCCCc
Q 011442 103 YGTKIGGTIFDRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTS----GKRPKAVGVIFKDENGNQHQAFLAGNPKS 178 (485)
Q Consensus 103 ~g~~~g~~~~~~~g~R~sa~~~l~~~~~~nl~v~~~~~V~rI~~~~~----~~~~~a~GV~~~~~~g~~~~v~a~~~a~k 178 (485)
.|...|.++.+.+|.|++...++....+.+.++.+...+.|+++... -....++++.+.|..|++..- -
T Consensus 220 ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~g-------v 292 (623)
T KOG1238|consen 220 AGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAKG-------V 292 (623)
T ss_pred hHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEEE-------E
Confidence 34445566778899999999888877788999999999999988732 123467788888766665331 1
Q ss_pred eEEEecCCcchHHH---HHHc-C-CCChHHhhhcCCceeecCcccc
Q 011442 179 EVILSCGAIGTPQM---LKLS-G-VGPKAELEKLNISVVLDNAHIG 219 (485)
Q Consensus 179 eVILaAGai~TP~L---Ll~S-G-IG~~~~L~~~GI~~v~dlp~VG 219 (485)
+++-..|--++-+= .-+| | |+-+..|=-.||-+..+|..+|
T Consensus 293 ~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~g 338 (623)
T KOG1238|consen 293 EFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLG 338 (623)
T ss_pred EEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcC
Confidence 22222222222221 2344 2 7777777667766555544444
No 110
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=53.38 E-value=33 Score=39.62 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=46.4
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
+++.+++|++++.|++|.-+ .++.+|++....|...++.+ +.|+++.|..-...|+...|..
T Consensus 361 L~~~GV~i~~~~~v~~i~g~-----~~v~~V~l~~~~g~~~~i~~-----D~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGG-----KRVSGVAVARNGGAGQRLEA-----DALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHHcCCEEEcCCeEEEEecC-----CcEEEEEEEecCCceEEEEC-----CEEEEcCCcCchhHHHHhcCCC
Confidence 34568999999999998522 36888888643455556653 9999999999888888877643
No 111
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=52.19 E-value=27 Score=36.75 Aligned_cols=42 Identities=21% Similarity=0.137 Sum_probs=28.6
Q ss_pred eeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 011442 436 KVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481 (485)
Q Consensus 436 rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~~~ 481 (485)
+...++|||.+.+|++|-. +=|. +++=|..+|+.|++++..+
T Consensus 454 ~~t~i~gLyl~G~~~~pG~--Gv~g--~~~sg~~~a~~il~~~~~~ 495 (502)
T TIGR02734 454 RDRKIDNLYLVGAGTHPGA--GVPG--VLGSAKATAKLMLGDLAPG 495 (502)
T ss_pred CCCCCCCEEEeCCCCCCCC--CHHH--HHHHHHHHHHHHHhhccCC
Confidence 3457899999999998832 2222 3445667888888875443
No 112
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=51.13 E-value=36 Score=32.35 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=40.9
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC----CC---CeeEEEecCCCCceEEEecCC-cchHHHHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE----NG---NQHQAFLAGNPKSEVILSCGA-IGTPQMLKL 195 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~----~g---~~~~v~a~~~a~keVILaAGa-i~TP~LLl~ 195 (485)
.+...+++|+.++.|+.|+++++. .+++||..... .| ...++.+ |-||.|.|. =.-.+.|.+
T Consensus 109 ~a~e~GV~I~~~t~V~dli~~~~~--~~V~GVv~~~~~v~~~g~~~d~~~i~A-----k~VVdATG~~a~v~~~l~~ 178 (254)
T TIGR00292 109 KALQAGAKIFNGTSVEDLITRDDT--VGVAGVVINWSAIELAGLHVDPLTQRS-----RVVVDATGHDAEIVAVCAK 178 (254)
T ss_pred HHHHcCCEEECCcEEEEEEEeCCC--CceEEEEeCCccccccCCCCCCEEEEc-----CEEEEeecCCchHHHHHHH
Confidence 344457999999999999987542 37999987421 12 2345653 999999993 233444444
No 113
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.56 E-value=26 Score=36.84 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=36.1
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 195 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~ 195 (485)
.+...+.+|.++++|++|+.+++ + ||.+...+| ..+. .+.||..+.. ..+..|..
T Consensus 233 ~~~~~Gg~I~~~~~V~~I~v~~g----~--g~~~~~~~g--~~~~-----ad~vv~~~~~-~~~~~l~~ 287 (487)
T COG1233 233 LAREHGGEIRTGAEVSQILVEGG----K--GVGVRTSDG--ENIE-----ADAVVSNADP-ALLARLLG 287 (487)
T ss_pred HHHHcCCEEECCCceEEEEEeCC----c--ceEEecccc--ceec-----cceeEecCch-hhhhhhhh
Confidence 34567899999999999999875 4 555544455 3343 2677776666 44444443
No 114
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=50.15 E-value=9.2 Score=39.99 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=47.9
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
|.+.+++++-..+|.+++-+++ +++.|+++.|. .|++++++| |.||=|+|-+.-.-..|
T Consensus 234 A~r~GA~v~Nh~ev~~Llkd~~---~kv~Ga~~rD~iTG~e~~I~A-----k~VVNATGpfsDsIr~M 293 (680)
T KOG0042|consen 234 AARNGATVLNHVEVVSLLKDKD---GKVIGARARDHITGKEYEIRA-----KVVVNATGPFSDSIRKM 293 (680)
T ss_pred HHhcchhhhhHHHHHHHhhCCC---CceeeeEEEEeecCcEEEEEE-----EEEEeCCCCccHHHHhh
Confidence 3467899999999999998876 48999999875 689999986 99999999875444333
No 115
>PLN02985 squalene monooxygenase
Probab=49.72 E-value=49 Score=35.11 Aligned_cols=53 Identities=15% Similarity=0.264 Sum_probs=37.4
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
..+|+++..+ +|+.++.++ ..++||.+.+.+|++.++.+ +-||.|.|..-.-|
T Consensus 159 ~~~~V~i~~g-tvv~li~~~----~~v~gV~~~~~dG~~~~~~A-----dLVVgADG~~S~vR 211 (514)
T PLN02985 159 SLPNVRLEEG-TVKSLIEEK----GVIKGVTYKNSAGEETTALA-----PLTVVCDGCYSNLR 211 (514)
T ss_pred hCCCeEEEee-eEEEEEEcC----CEEEEEEEEcCCCCEEEEEC-----CEEEECCCCchHHH
Confidence 4578999855 677776543 37889998765676666664 89999999754433
No 116
>PRK08401 L-aspartate oxidase; Provisional
Probab=48.86 E-value=36 Score=35.62 Aligned_cols=48 Identities=15% Similarity=0.307 Sum_probs=34.3
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+.+.+++++.+ .|++|+.++ .+++||.. +|. .+.+ +.||||+|.+..
T Consensus 129 ~~~~~gv~i~~~-~v~~l~~~~----g~v~Gv~~---~g~--~i~a-----~~VVLATGG~~~ 176 (466)
T PRK08401 129 HARELGVNFIRG-FAEELAIKN----GKAYGVFL---DGE--LLKF-----DATVIATGGFSG 176 (466)
T ss_pred HHHhcCCEEEEe-EeEEEEeeC----CEEEEEEE---CCE--EEEe-----CeEEECCCcCcC
Confidence 345568999876 788887653 37889876 332 3443 899999999765
No 117
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=46.60 E-value=29 Score=36.25 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=41.0
Q ss_pred hhh-hcCCCCeE--EEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 124 LLA-SANPQKIT--VLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 124 ~l~-~~~~~nl~--v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
||. .++.-++. |..+++|++|..+++ + .-|...+.++...+... +.||||.|....|++.-.-|+
T Consensus 116 YL~~~a~~fgl~~~I~~~t~V~~V~~~~~----~-w~V~~~~~~~~~~~~~~-----d~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 116 YLQDFAREFKIEEMVRFETEVVRVEPVDG----K-WRVQSKNSGGFSKDEIF-----DAVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHcCCcceEEecCEEEEEeecCC----e-EEEEEEcCCCceEEEEc-----CEEEEeccCCCCCcCCCCCCc
Confidence 664 34455666 899999999976432 2 22333322222222232 999999999988988766554
No 118
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=46.11 E-value=34 Score=36.93 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=37.4
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
+.+|++++.+ .|+.++.+.+ .++.||... +|. .+.+ +.||||+|++...++..
T Consensus 108 ~~pgV~Ile~-~Vv~li~e~~---g~V~GV~t~--~G~--~I~A-----d~VILATGtfL~g~ihi 160 (617)
T TIGR00136 108 NQPNLSLFQG-EVEDLILEDN---DEIKGVVTQ--DGL--KFRA-----KAVIITTGTFLRGKIHI 160 (617)
T ss_pred cCCCcEEEEe-EEEEEEEecC---CcEEEEEEC--CCC--EEEC-----CEEEEccCcccCCCEEe
Confidence 4579999754 7888876633 378999884 453 4553 89999999997555444
No 119
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=45.66 E-value=33 Score=34.29 Aligned_cols=50 Identities=6% Similarity=0.038 Sum_probs=32.8
Q ss_pred ccCCCCeeeccCCceEee-cccCCCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011442 430 VVSTEYKVLGIDRLRVVD-GSTYDESPGTNPQGTVLMMGRYMGVKILRQRL 479 (485)
Q Consensus 430 VVD~~~rV~G~~nL~VvD-aSv~P~~~~~np~~ti~alA~r~A~~i~~~~~ 479 (485)
.||.++|..+.+|+|++. ++.++..+.......++.-|..+|..|.+...
T Consensus 261 ~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~ 311 (364)
T TIGR03169 261 RVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLR 311 (364)
T ss_pred EECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhc
Confidence 789999998999999985 55555443322223345566667777765543
No 120
>PRK06126 hypothetical protein; Provisional
Probab=44.85 E-value=61 Score=34.57 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcc
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+.+|++|..+++|++|..+++ .++ |.+.+ .+|+..++.+ +-||.|.|+-.
T Consensus 138 ~~~~v~i~~~~~v~~i~~~~~----~v~-v~~~~~~~g~~~~i~a-----d~vVgADG~~S 188 (545)
T PRK06126 138 AQPGVTLRYGHRLTDFEQDAD----GVT-ATVEDLDGGESLTIRA-----DYLVGCDGARS 188 (545)
T ss_pred hCCCceEEeccEEEEEEECCC----eEE-EEEEECCCCcEEEEEE-----EEEEecCCcch
Confidence 347899999999999987653 344 45544 3466667764 88999999743
No 121
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=44.57 E-value=68 Score=33.07 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=37.0
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+.+.+++|+++++|++|+.+++ ++++|. .+|. ++.+ +.||+|.|+ . ..|....|+
T Consensus 118 a~~~Gv~i~~~~~V~~i~~~~g----~v~~v~---~~g~--~i~A-----~~VI~A~G~-~-s~l~~~lgl 172 (428)
T PRK10157 118 AEEAGAQLITGIRVDNLVQRDG----KVVGVE---ADGD--VIEA-----KTVILADGV-N-SILAEKLGM 172 (428)
T ss_pred HHHCCCEEECCCEEEEEEEeCC----EEEEEE---cCCc--EEEC-----CEEEEEeCC-C-HHHHHHcCC
Confidence 4457899999999999987643 565554 2443 3443 899999997 3 344444444
No 122
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=43.64 E-value=53 Score=34.34 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=40.5
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEe--C--------CCCeeEEEecCCCCceEEEecCCcch-HHHHHHcCC
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD--E--------NGNQHQAFLAGNPKSEVILSCGAIGT-PQMLKLSGV 198 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~--~--------~g~~~~v~a~~~a~keVILaAGai~T-P~LLl~SGI 198 (485)
..++++++++.+++|.-++ .++++|++.. . .|...++.+ +.||+|.|..-. ..||...||
T Consensus 341 ~~GV~i~~~~~~~~i~~~~----g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~-----D~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 341 EEGVEREFNVQTKEFEGEN----GKVTGVKVVRTELGEGDFEPVEGSEFVLPA-----DLVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HcCCeEEeccCceEEEccC----CEEEEEEEEEEEecCCCccccCCceEEEEC-----CEEEECcCcCCCchhhccccCc
Confidence 4689999999999996332 4899988642 1 234455653 999999995433 446555443
No 123
>PRK07121 hypothetical protein; Validated
Probab=43.42 E-value=39 Score=35.52 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=41.6
Q ss_pred ccccccCc-ccCCC-Ceeec-----cCCceEee---cccCCC-CCCCCchhHHHHHHHHHHHHHHHH
Q 011442 422 HGGCHVGK-VVSTE-YKVLG-----IDRLRVVD---GSTYDE-SPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 422 ~GTc~MG~-VVD~~-~rV~G-----~~nL~VvD---aSv~P~-~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
.-.+.||| ++|.+ +||-. ++|||.+. ++++-. -+++|.....+..+..+++++.++
T Consensus 424 ~~~~T~GGl~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 424 TPGFTLGGLRVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred cceeeccCeeECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 34456776 68999 99997 89999998 445522 236788888899998888877643
No 124
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=43.32 E-value=40 Score=34.72 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=33.4
Q ss_pred ccCCCCeeeccCCceEe-ecccCCCCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 011442 430 VVSTEYKVLGIDRLRVV-DGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLG 480 (485)
Q Consensus 430 VVD~~~rV~G~~nL~Vv-DaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~~ 480 (485)
.||+++|+-+++|+|++ |++-++..+........+.-|..+|..|.++..+
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999965 6666653321111223455677777777766544
No 125
>PRK12831 putative oxidoreductase; Provisional
Probab=42.84 E-value=66 Score=33.62 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=39.0
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-------CC---------CCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-------EN---------GNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-------~~---------g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
...++++++++.+.+|.-+++ ++++||++.. .+ |...++.+ +.||+|.|..-...+
T Consensus 329 ~~eGV~i~~~~~~~~i~~~~~---g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~-----D~Vi~AiG~~p~~~~ 400 (464)
T PRK12831 329 KEEGVIFDLLTNPVEILGDEN---GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEV-----DTVIMSLGTSPNPLI 400 (464)
T ss_pred HHcCCEEEecccceEEEecCC---CeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC-----CEEEECCCCCCChhh
Confidence 346899999999999976543 4889988751 12 23344553 899999996544444
Q ss_pred H
Q 011442 193 L 193 (485)
Q Consensus 193 L 193 (485)
|
T Consensus 401 ~ 401 (464)
T PRK12831 401 S 401 (464)
T ss_pred h
Confidence 3
No 126
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=42.25 E-value=45 Score=35.02 Aligned_cols=71 Identities=8% Similarity=-0.028 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHhhcccccccccccccCcccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 011442 402 NDTKSLEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 402 ~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
.+..++++|......+.+|..=+....+.--...+ ..++|||.|.+|++|-. +=| .++.=|..+|+.|+++
T Consensus 421 ~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~-t~i~gLyl~G~~~~pG~--Gv~--g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 421 ATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSR-TPVKGLWLCGDSIHPGE--GTA--GVSYSALMVVRQILAS 491 (492)
T ss_pred cCCchHHHHhCCCCcEECCCCcCccccCCcCCCCC-CCCCCeEEecCccCCCC--cHH--HHHHHHHHHHHHHhhc
Confidence 34456666654333334433222211111112223 37999999999999932 112 2444567777877754
No 127
>PRK10262 thioredoxin reductase; Provisional
Probab=41.46 E-value=1.1e+02 Score=29.90 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=42.0
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCC--CCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN--GNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~--g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
.+..++++++++.|++|.-++ .++++|++.+.. +...++.+ +.||++.|..-...|+ .+++
T Consensus 195 l~~~gV~i~~~~~v~~v~~~~----~~~~~v~~~~~~~~~~~~~i~~-----D~vv~a~G~~p~~~l~-~~~l 257 (321)
T PRK10262 195 VENGNIILHTNRTLEEVTGDQ----MGVTGVRLRDTQNSDNIESLDV-----AGLFVAIGHSPNTAIF-EGQL 257 (321)
T ss_pred ccCCCeEEEeCCEEEEEEcCC----ccEEEEEEEEcCCCCeEEEEEC-----CEEEEEeCCccChhHh-hccc
Confidence 456789999999999986332 257788886432 33345553 9999999977666654 3444
No 128
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=41.39 E-value=85 Score=33.29 Aligned_cols=56 Identities=27% Similarity=0.412 Sum_probs=41.7
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHH
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 195 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~ 195 (485)
.|++|++++.|++|.-++ .++++|.+.+. .|...++.+ +.||+|.|..-...+|..
T Consensus 401 ~gV~i~~~~~v~~i~~~~----~~v~~v~~~~~~~~~~~~i~~-----D~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDG----DKVTGIRYQDRNSGEEKQLDL-----DGVFVQIGLVPNTEWLKD 457 (515)
T ss_pred CCCEEEECCeeEEEEcCC----CEEEEEEEEECCCCcEEEEEc-----CEEEEEeCCcCCchHHhh
Confidence 689999999999986432 37888988753 344455653 899999998877776643
No 129
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=41.15 E-value=30 Score=35.28 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=29.8
Q ss_pred ccCcccCCCCeeeccCCceEe-ecccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 011442 426 HVGKVVSTEYKVLGIDRLRVV-DGSTYDESPGTNPQGTVLMMGRYMGVKILR 476 (485)
Q Consensus 426 ~MG~VVD~~~rV~G~~nL~Vv-DaSv~P~~~~~np~~ti~alA~r~A~~i~~ 476 (485)
|=|=.||+.+||.|++|+|-+ |++.+|.. -| ..-+|++-++.+.+
T Consensus 345 rr~L~vDE~LrV~G~~nvfAiGDca~~~~~---~~---tAQVA~QqG~yLAk 390 (491)
T KOG2495|consen 345 RRGLAVDEWLRVKGVKNVFAIGDCADQRGL---KP---TAQVAEQQGAYLAK 390 (491)
T ss_pred ceeeeeeceeeccCcCceEEeccccccccC---cc---HHHHHHHHHHHHHH
Confidence 444589999999999999955 66634433 33 33456666665543
No 130
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=37.33 E-value=33 Score=36.80 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=55.1
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcc-----hHHHHHHcCCCChHH
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIG-----TPQMLKLSGVGPKAE 203 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~-----TP~LLl~SGIG~~~~ 203 (485)
..+++++.+..|.+++.+++ ..+.||...+. .|+.+.+++ |.||||.|..+ |+-.....|-|-. .
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~---~~v~Gvv~~~~~~g~~~~~~a-----kavilaTGG~g~~~~~~t~~~~~tGdG~~-m 221 (562)
T COG1053 151 FSGIEIFDEYFVLDLLVDDG---GGVAGVVARDLRTGELYVFRA-----KAVILATGGAGRLYPYTTNAHIGTGDGVA-M 221 (562)
T ss_pred hhcchhhhhhhhhhheecCC---CcEEEEEEEEecCCcEEEEec-----CcEEEccCCceEEEeccCCccccCCcHHH-H
Confidence 36789999999999998865 24888887664 466666653 99999999988 4444444332211 1
Q ss_pred hhhcCCceeecCccccccCccCCCc
Q 011442 204 LEKLNISVVLDNAHIGKGMADNPMN 228 (485)
Q Consensus 204 L~~~GI~~v~dlp~VG~nl~dH~~~ 228 (485)
.-+.|.+ .. ..+..|-||..
T Consensus 222 a~~aGa~-l~----dme~~Q~hpt~ 241 (562)
T COG1053 222 AYRAGAP-LI----DMEFVQFHPTG 241 (562)
T ss_pred HHhcCCc-cc----CCCccccccce
Confidence 2245555 22 34456777763
No 131
>PRK07233 hypothetical protein; Provisional
Probab=37.29 E-value=55 Score=33.37 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=36.1
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
+...+.+|.++++|++|..+++ ++++|.. ++. ++.+ +.||+|+..-..++||
T Consensus 208 l~~~g~~v~~~~~V~~i~~~~~----~~~~~~~---~~~--~~~a-----d~vI~a~p~~~~~~ll 259 (434)
T PRK07233 208 IEARGGEIRLGTPVTSVVIDGG----GVTGVEV---DGE--EEDF-----DAVISTAPPPILARLV 259 (434)
T ss_pred HHhcCceEEeCCCeeEEEEcCC----ceEEEEe---CCc--eEEC-----CEEEECCCHHHHHhhc
Confidence 3445789999999999987653 5665542 343 3443 8899999876666654
No 132
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=36.96 E-value=60 Score=24.71 Aligned_cols=34 Identities=21% Similarity=0.519 Sum_probs=28.0
Q ss_pred eccCCceEeecccCCCCCCCCchhHHHHHHHHHH
Q 011442 438 LGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMG 471 (485)
Q Consensus 438 ~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A 471 (485)
....|.+|+|..+.|..|......-++++|.=++
T Consensus 36 ~~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~G 69 (82)
T PF13807_consen 36 SNVSNVRIVDPAIVPDKPVSPKRALILALGLFLG 69 (82)
T ss_pred ccCCCceeccccccCCCCCCCcHHHHHHHHHHHH
Confidence 3677899999999999999888888888876444
No 133
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=36.78 E-value=63 Score=33.65 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=38.1
Q ss_pred ccccccCc-ccCCCCeeec-----cCCceEeec---c-cCCC-CCCCCchhHHHHHHHHHHHHHHHH
Q 011442 422 HGGCHVGK-VVSTEYKVLG-----IDRLRVVDG---S-TYDE-SPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 422 ~GTc~MG~-VVD~~~rV~G-----~~nL~VvDa---S-v~P~-~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
.-.+.||| .+|.++||.. ++|||.+.. + ++-. -+++|-.+-.+..+..+++++.+.
T Consensus 394 ~~~~t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~ 460 (466)
T PRK08274 394 GITFTYLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARH 460 (466)
T ss_pred ceeeecccEEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHH
Confidence 33445665 6788888864 899999973 3 5532 234566677788888888887654
No 134
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=36.07 E-value=1e+02 Score=31.97 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=40.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-------CCC---------CeeEEEecCCCCceEEEecCCcchHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-------ENG---------NQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-------~~g---------~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
+...++++++++.+.+|.-+++ .++++|++.. .+| ...++.+ +.||+|.|..-...
T Consensus 319 l~~~GV~~~~~~~~~~i~~~~~---g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-----D~Vi~AiG~~p~~~ 390 (449)
T TIGR01316 319 AEEEGVKFHFLCQPVEIIGDEE---GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEA-----DAVIVAIGNGSNPI 390 (449)
T ss_pred HHhCCCEEEeccCcEEEEEcCC---CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEEC-----CEEEECCCCCCCch
Confidence 3456999999999999975433 4788988751 123 2334543 89999999644443
Q ss_pred HHHHcC
Q 011442 192 MLKLSG 197 (485)
Q Consensus 192 LLl~SG 197 (485)
+|...|
T Consensus 391 ~l~~~g 396 (449)
T TIGR01316 391 MAETTR 396 (449)
T ss_pred hhhccC
Confidence 443334
No 135
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=35.98 E-value=82 Score=32.67 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=34.5
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
.+.+++++++++|++|..+++ .+. |+. .+|...++.+ +.||+|.|..-...
T Consensus 222 ~~~gi~i~~~~~v~~i~~~~~----~v~-v~~--~~g~~~~i~~-----D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 222 KKKGVKILTNTKVTAVEKNDD----QVV-YEN--KGGETETLTG-----EKVLVAVGRKPNTE 272 (461)
T ss_pred HHcCCEEEeCCEEEEEEEeCC----EEE-EEE--eCCcEEEEEe-----CEEEEecCCcccCC
Confidence 445899999999999976542 332 333 3454344553 89999999766555
No 136
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=34.78 E-value=93 Score=30.94 Aligned_cols=59 Identities=19% Similarity=0.396 Sum_probs=39.6
Q ss_pred EccceEEEEEeecC---------C-C---CCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCC
Q 011442 136 LIRATVQKIVFDTS---------G-K---RPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGP 200 (485)
Q Consensus 136 ~~~~~V~rI~~~~~---------~-~---~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~ 200 (485)
+.+-+|+..+|+.. + . -.+..||.+.-.++..+++++ ..+|+|||| -|-|+-.+.|||-
T Consensus 260 f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~-----al~V~aAGa-~s~QvArlAgIG~ 331 (509)
T KOG2853|consen 260 FVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKF-----ALCVNAAGA-WSGQVARLAGIGK 331 (509)
T ss_pred EecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeE-----EEEEeccCc-cHHHHHHHhccCC
Confidence 44567777777622 1 0 125556666544555667775 789999999 5889999999983
No 137
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=34.29 E-value=80 Score=31.66 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=23.8
Q ss_pred CCceEeecccCCCCCCCCchhHHHHHHHHHHHHHH
Q 011442 441 DRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKIL 475 (485)
Q Consensus 441 ~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~ 475 (485)
+||+.+...+.|...+ -+--++.=|+++|+.|+
T Consensus 418 ~~l~~aG~~~~~~~~~--~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYPG--GIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTEEE-SGGGSSSSTT--SHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCCC--cHHHHHHHHHHHHHHhC
Confidence 8999999999996542 33345566788998875
No 138
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=33.87 E-value=53 Score=31.85 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=40.1
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
++.|++++.+.. ..|. |+. .|..+|......+..+... ...+|||||. -|++||..-+|
T Consensus 159 k~~~V~lv~Gkv-~ev~-dEk---~r~n~v~~ae~~~ti~~~d-----~~~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 159 KRGGVKLVFGKV-KEVS-DEK---HRINSVPKAEAEDTIIKAD-----VHKIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred hhcCeEEEEeee-EEee-ccc---ccccccchhhhcCceEEee-----eeEEEEecCC-Cchhhcccccc
Confidence 678999998864 4444 333 4888887753334333333 2789999998 68999988665
No 139
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=33.53 E-value=90 Score=33.75 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=37.1
Q ss_pred cccCc-ccCCCCeeec-----cCCceEee---cccCCC-CCC-CCchhHHHHHHHHHHHHHHHHhhh
Q 011442 425 CHVGK-VVSTEYKVLG-----IDRLRVVD---GSTYDE-SPG-TNPQGTVLMMGRYMGVKILRQRLG 480 (485)
Q Consensus 425 c~MG~-VVD~~~rV~G-----~~nL~VvD---aSv~P~-~~~-~np~~ti~alA~r~A~~i~~~~~~ 480 (485)
+.||| ++|.++||-+ ++|||.+. ++++-. -++ ++.....+..+..+++++.+....
T Consensus 506 ~T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~~ 572 (584)
T PRK12835 506 GTSGGLRTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVAA 572 (584)
T ss_pred ccCcCccCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhhh
Confidence 34554 5566666666 68999998 555532 222 566777888888888888765443
No 140
>PLN02612 phytoene desaturase
Probab=33.47 E-value=65 Score=34.65 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=32.7
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
+.+.+|.+++.|++|..+++ +++++|++. +|+. +.+ +.||++...
T Consensus 320 ~~G~~I~l~~~V~~I~~~~~---g~v~~v~~~--~G~~--~~a-----d~VI~a~p~ 364 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELNDD---GTVKHFLLT--NGSV--VEG-----DVYVSATPV 364 (567)
T ss_pred hcCCEEEeCCeeeEEEECCC---CcEEEEEEC--CCcE--EEC-----CEEEECCCH
Confidence 35789999999999998654 367777774 5643 443 889988653
No 141
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=33.32 E-value=84 Score=32.84 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=40.3
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-------CC---------CCeeEEEecCCCCceEEEecCCcch-HHH
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-------EN---------GNQHQAFLAGNPKSEVILSCGAIGT-PQM 192 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-------~~---------g~~~~v~a~~~a~keVILaAGai~T-P~L 192 (485)
..++++++++.+.+|..+++ .++++|++.. .+ |+..++.+ +.||+|.|..-. ..+
T Consensus 332 ~~GV~~~~~~~~~~i~~~~~---g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~-----D~Vi~a~G~~p~~~~~ 403 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDED---GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPA-----DVVIMAFGFQPHAMPW 403 (467)
T ss_pred hcCCEEEecCCcEEEEECCC---CeEEEEEEEEEEecccCCCCCccceecCCceEEEEC-----CEEEECCcCCCCcccc
Confidence 46899999999999976543 3788888742 12 23345553 899999996543 334
Q ss_pred HHHcCC
Q 011442 193 LKLSGV 198 (485)
Q Consensus 193 Ll~SGI 198 (485)
|..+|+
T Consensus 404 ~~~~gl 409 (467)
T TIGR01318 404 LAGHGI 409 (467)
T ss_pred ccccCc
Confidence 444443
No 142
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=32.91 E-value=1.3e+02 Score=32.00 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=38.0
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
.++++|..+++|+.|..+++ .+ -|.+.+.+|+..++++ +-||-|-|+-.+-+=
T Consensus 126 ~~gv~v~~g~~v~~i~~~~~----~v-~v~~~~~~G~~~~i~a-----d~vVgADG~~S~vR~ 178 (538)
T PRK06183 126 FPHVRVRFGHEVTALTQDDD----GV-TVTLTDADGQRETVRA-----RYVVGCDGANSFVRR 178 (538)
T ss_pred CCCcEEEcCCEEEEEEEcCC----eE-EEEEEcCCCCEEEEEE-----EEEEecCCCchhHHH
Confidence 36899999999999987653 33 3555544676667775 899999997555543
No 143
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=32.91 E-value=1.1e+02 Score=31.95 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=35.6
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
.+.+++|+++++|++|.-++ .. ..|.+...+|+..++.+ +.||+|.|..-...+
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~----~~-~~v~~~~~~g~~~~i~~-----D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNG----SK-VTVTVSKKDGKAQELEA-----DKVLQAIGFAPRVEG 277 (466)
T ss_pred HHCCCEEEECCEEEEEEEeC----Ce-EEEEEEecCCCeEEEEe-----CEEEECcCcccCCCC
Confidence 45699999999999996432 12 23444323565455654 999999997655443
No 144
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=32.82 E-value=1e+02 Score=31.31 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=33.8
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
..+|+++..+++|++|..+++ .+ .|.+.+ ++...++.+ +-||.|-|+-.
T Consensus 133 ~~~~v~i~~~~~v~~v~~~~~----~~-~v~~~~-~~~~~~i~a-----dlvIgADG~~S 181 (415)
T PRK07364 133 SCPNITWLCPAEVVSVEYQQD----AA-TVTLEI-EGKQQTLQS-----KLVVAADGARS 181 (415)
T ss_pred cCCCcEEEcCCeeEEEEecCC----ee-EEEEcc-CCcceEEee-----eEEEEeCCCCc
Confidence 346899999999999976543 22 355543 344445664 99999999744
No 145
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=32.19 E-value=1.2e+02 Score=30.62 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=40.9
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
+...++++++++.|.+|..+.+ . ..|.+ .+|. ++.+ +.||+|.|..-.+.++..+|+.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~~~----~-~~v~~--~~g~--~i~~-----D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKTDS----G-IRATL--DSGR--SIEV-----DAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHhCCCEEEECCeEEEEEccCC----E-EEEEE--cCCc--EEEC-----CEEEECcCCCcchHHHHHCCCC
Confidence 3456899999999999875432 2 23544 2554 3443 8999999988777888888764
No 146
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=32.04 E-value=87 Score=33.79 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=35.4
Q ss_pred cccCc-ccCCCCeeec-----cCCceEee---cccCCC-C-CCCCchhHHHHHHHHHHHHHHHHh
Q 011442 425 CHVGK-VVSTEYKVLG-----IDRLRVVD---GSTYDE-S-PGTNPQGTVLMMGRYMGVKILRQR 478 (485)
Q Consensus 425 c~MG~-VVD~~~rV~G-----~~nL~VvD---aSv~P~-~-~~~np~~ti~alA~r~A~~i~~~~ 478 (485)
+.||| .+|.++||.. ++|||.+. ++++-. - ..++.....+..+..+++++.+..
T Consensus 508 ~T~GGl~in~~~qVld~dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 508 GAATGLVTDASARVLNADGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred ccCCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 34444 5677777766 79999986 344422 1 235667778888888888876543
No 147
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=31.70 E-value=84 Score=32.90 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=37.0
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
.+.+++|+++++|++|.-+++ . ..|++.+.+|+..++.+ +.||+|.|..-....|
T Consensus 235 ~~~gi~i~~~~~v~~i~~~~~----~-v~v~~~~~~g~~~~i~~-----D~vl~a~G~~p~~~~l 289 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTGGK----G-VSVAYTDADGEAQTLEV-----DKLIVSIGRVPNTDGL 289 (475)
T ss_pred HHcCcEEEeCcEEEEEEEcCC----E-EEEEEEeCCCceeEEEc-----CEEEEccCCccCCCCC
Confidence 456899999999999975432 2 23555543455455553 8999999976655533
No 148
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=31.64 E-value=77 Score=34.02 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=37.7
Q ss_pred cccCc-ccCCCCeeec-----cCCceEeec---ccCC-CCCC-CCchhHHHHHHHHHHHHHHHHh
Q 011442 425 CHVGK-VVSTEYKVLG-----IDRLRVVDG---STYD-ESPG-TNPQGTVLMMGRYMGVKILRQR 478 (485)
Q Consensus 425 c~MG~-VVD~~~rV~G-----~~nL~VvDa---Sv~P-~~~~-~np~~ti~alA~r~A~~i~~~~ 478 (485)
+.+|| .+|.++||-. ++|||.+.. +++- .-++ ++.....+..+..+++++.+..
T Consensus 486 ~T~GGl~in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~ 550 (557)
T PRK12844 486 GTSGGLLTDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGAR 550 (557)
T ss_pred EECCCccCCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhcc
Confidence 34454 5677777776 889999973 4543 2233 6778888999999888886653
No 149
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=31.11 E-value=1.2e+02 Score=29.98 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=40.8
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEE--eC----CCCe--------eEEEecCCCCceEEEecCCcchHHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFK--DE----NGNQ--------HQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~--~~----~g~~--------~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
+++.++....++|.++...++ +++||.-. .. .|+. +++.| ..||++.|.|+-.+=|.
T Consensus 164 ~~~~v~f~~RHrV~~l~~t~g----rvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A-----~aviv~SGGIGGnhelV 234 (552)
T COG3573 164 RRGRVTFRFRHRVDGLTTTGG----RVTGVRGDVLEPSDVERGQPSSREVVGDFEFSA-----SAVIVASGGIGGNHELV 234 (552)
T ss_pred hCCceEEEeeeeccceEeeCC----eEeeecccccCCCccccCCCccceeecceEEee-----eeEEEecCCcCCCHHHH
Confidence 577899999999999988764 89999631 11 1221 23332 78899999887666555
Q ss_pred Hc
Q 011442 195 LS 196 (485)
Q Consensus 195 ~S 196 (485)
+-
T Consensus 235 Rr 236 (552)
T COG3573 235 RR 236 (552)
T ss_pred Hh
Confidence 53
No 150
>PRK12839 hypothetical protein; Provisional
Probab=30.25 E-value=85 Score=33.85 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=35.5
Q ss_pred cCc-ccCCCCeeec-----cCCceEeec---ccCCC-C-CCCCchhHHHHHHHHHHHHHHH
Q 011442 427 VGK-VVSTEYKVLG-----IDRLRVVDG---STYDE-S-PGTNPQGTVLMMGRYMGVKILR 476 (485)
Q Consensus 427 MG~-VVD~~~rV~G-----~~nL~VvDa---Sv~P~-~-~~~np~~ti~alA~r~A~~i~~ 476 (485)
||| .+|.++||.+ ++|||.+.. +++-. - .+++.....+..+..+++++.+
T Consensus 506 ~GGl~in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~ 566 (572)
T PRK12839 506 FAGLVADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAG 566 (572)
T ss_pred CCCccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHh
Confidence 444 5677777766 789999973 55532 1 3477788889999988888754
No 151
>CHL00051 rps12 ribosomal protein S12
Probab=29.09 E-value=37 Score=28.08 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=17.3
Q ss_pred CceeecCccccccCccCCCceee
Q 011442 209 ISVVLDNAHIGKGMADNPMNAVF 231 (485)
Q Consensus 209 I~~v~dlp~VG~nl~dH~~~~~~ 231 (485)
-.+..=.|+-|.|||+|..+.+-
T Consensus 61 k~v~AyIPGeGhnlqehs~VLvr 83 (123)
T CHL00051 61 FEITAYIPGIGHNLQEHSVVLVR 83 (123)
T ss_pred CEEEEEcCCCCccccccCEEEEe
Confidence 34555578999999999876653
No 152
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=28.82 E-value=70 Score=30.79 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=38.5
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHc
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 196 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~S 196 (485)
.+|+|+.+++|++|-..++ ---+.. .+|..+.. .+.|||+.=+=+|+.||--+
T Consensus 116 tdL~V~~~~rVt~v~~~~~-----~W~l~~--~~g~~~~~------~d~vvla~PAPQ~~~LLt~~ 168 (331)
T COG3380 116 TDLTVVLETRVTEVARTDN-----DWTLHT--DDGTRHTQ------FDDVVLAIPAPQTATLLTTD 168 (331)
T ss_pred ccchhhhhhhhhhheecCC-----eeEEEe--cCCCcccc------cceEEEecCCCcchhhcCcc
Confidence 5899999999999977643 112222 25555443 29999999999999988755
No 153
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=28.65 E-value=92 Score=33.51 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=33.8
Q ss_pred ccCCCCeeec-----cCCceEee---cccCC-CCCC-CCchhHHHHHHHHHHHHHHH
Q 011442 430 VVSTEYKVLG-----IDRLRVVD---GSTYD-ESPG-TNPQGTVLMMGRYMGVKILR 476 (485)
Q Consensus 430 VVD~~~rV~G-----~~nL~VvD---aSv~P-~~~~-~np~~ti~alA~r~A~~i~~ 476 (485)
.+|.++||.+ ++|||.+. ++++- .-++ ++.....+..+..+++++.+
T Consensus 507 ~id~~~qVLd~dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 507 RADERARVLREDGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred eECCCceEECCCCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 5677777665 78999996 45553 3333 77888889999988887753
No 154
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=27.59 E-value=1.5e+02 Score=28.01 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=32.3
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCc
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAI 187 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai 187 (485)
.+.+.+++++.+++|++|..+++ ++ .|.+. .+ ..++.+ +-||+|.|.-
T Consensus 100 ~~~~~gv~~~~~~~v~~~~~~~~----~~-~~~~~--~~-~~~~~a-----~~vv~a~G~~ 147 (295)
T TIGR02032 100 RAQEAGAELRLGTTVLDVEIHDD----RV-VVIVR--GG-EGTVTA-----KIVIGADGSR 147 (295)
T ss_pred HHHHcCCEEEeCcEEeeEEEeCC----EE-EEEEc--Cc-cEEEEe-----CEEEECCCcc
Confidence 34456899999999999988764 22 23332 22 234554 8999999965
No 155
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=27.39 E-value=1.4e+02 Score=32.83 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=33.5
Q ss_pred hhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 126 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 126 ~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
..+.. +++|+.++.|++|..+++ .++ |+ ..+|.. +.+ +.||+|+|+ .++.|+
T Consensus 416 ~~a~~-Gv~i~~~~~V~~i~~~~~----~~~-v~--t~~g~~--~~a-----d~VV~A~G~-~s~~l~ 467 (662)
T PRK01747 416 ALAGQ-QLTIHFGHEVARLEREDD----GWQ-LD--FAGGTL--ASA-----PVVVLANGH-DAARFA 467 (662)
T ss_pred Hhccc-CcEEEeCCEeeEEEEeCC----EEE-EE--ECCCcE--EEC-----CEEEECCCC-Cccccc
Confidence 34455 899999999999986543 333 33 234432 232 899999997 444443
No 156
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.99 E-value=1.8e+02 Score=29.71 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=39.6
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCc-chHHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAI-GTPQMLK 194 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai-~TP~LLl 194 (485)
..+++.+++++.|.++.-.++ ++ .-+.+... .|+..++.. +.||||.|-= ..|.+|.
T Consensus 289 ~~~~v~l~~~~ev~~~~~~G~---g~-~~l~~~~~~~~~~~t~~~-----D~vIlATGY~~~~P~fL~ 347 (436)
T COG3486 289 RKPDVRLLSLSEVQSVEPAGD---GR-YRLTLRHHETGELETVET-----DAVILATGYRRAVPSFLE 347 (436)
T ss_pred CCCCeeeccccceeeeecCCC---ce-EEEEEeeccCCCceEEEe-----eEEEEecccccCCchhhh
Confidence 368999999999999986554 23 33444432 466667764 8999999965 5665543
No 157
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=26.96 E-value=2.1e+02 Score=27.83 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=33.8
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
.+.+.+|..+++|+.+..+.+ .++.+.....+|+..++.+ +-||-|-|+
T Consensus 122 ~~~gv~i~~~~~v~~~~~d~~----~~~~~~~~~~~g~~~~i~a-----dlvVgADG~ 170 (356)
T PF01494_consen 122 EERGVDIRFGTRVVSIEQDDD----GVTVVVRDGEDGEEETIEA-----DLVVGADGA 170 (356)
T ss_dssp HHHTEEEEESEEEEEEEEETT----EEEEEEEETCTCEEEEEEE-----SEEEE-SGT
T ss_pred hhhhhhheeeeeccccccccc----ccccccccccCCceeEEEE-----eeeecccCc
Confidence 334599999999999987764 4444433333577777875 788888886
No 158
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.75 E-value=99 Score=33.48 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=37.8
Q ss_pred cccCcc-cCCCCeee--------ccCCceEeecccCCC-----CCCCCchhHHHHHHHHHHHHHHHH
Q 011442 425 CHVGKV-VSTEYKVL--------GIDRLRVVDGSTYDE-----SPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 425 c~MG~V-VD~~~rV~--------G~~nL~VvDaSv~P~-----~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
..|||| ||.++||. -++|||.+.-..--. -.++|..+-.+..+.++++.+.+.
T Consensus 359 ~t~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~~ 425 (591)
T PRK07057 359 YQMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVDH 425 (591)
T ss_pred eeCCCeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 457776 89999995 389999987643211 123577888888899988887653
No 159
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=26.71 E-value=1.2e+02 Score=33.09 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=35.8
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-------C---------CCeeEEEecCCCCceEEEecCCcc
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-------N---------GNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-------~---------g~~~~v~a~~~a~keVILaAGai~ 188 (485)
..++++++++.+.+|..+++ .++++|++... + |..+++.+ +.||+|.|...
T Consensus 501 ~eGv~~~~~~~~~~i~~~~~---g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~a-----D~Vi~AiG~~p 567 (639)
T PRK12809 501 EEGVEFQFNVQPQYIACDED---GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPA-----DVLIMAFGFQA 567 (639)
T ss_pred HcCCeEEeccCCEEEEECCC---CeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC-----CEEEECcCCCC
Confidence 46899999999999976544 47888876321 1 23345553 89999999554
No 160
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=26.35 E-value=1.2e+02 Score=33.18 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=40.6
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-------CCC---------CeeEEEecCCCCceEEEecCCcch-H
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-------ENG---------NQHQAFLAGNPKSEVILSCGAIGT-P 190 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-------~~g---------~~~~v~a~~~a~keVILaAGai~T-P 190 (485)
+...+++++.++.+.+|+.+++ .+++||++.. .+| ..+++.+ +.||+|.|.... .
T Consensus 516 ~~~~Gv~~~~~~~~~~i~~~~~---g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~-----D~Vi~AiG~~p~~~ 587 (654)
T PRK12769 516 AREEGANFEFNVQPVALELNEQ---GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPA-----DAVIMAFGFNPHGM 587 (654)
T ss_pred HHHcCCeEEeccCcEEEEECCC---CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEEC-----CEEEECccCCCCcc
Confidence 3346899999999999976544 4799998742 123 3344553 999999995543 2
Q ss_pred HHHHHcCC
Q 011442 191 QMLKLSGV 198 (485)
Q Consensus 191 ~LLl~SGI 198 (485)
.+|..+||
T Consensus 588 ~~~~~~gl 595 (654)
T PRK12769 588 PWLESHGV 595 (654)
T ss_pred ccccccCC
Confidence 33433343
No 161
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=26.26 E-value=1.1e+02 Score=33.32 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=37.1
Q ss_pred cCcc-cCCCCeee---------ccCCceEeecccC--CC---CCCCCchhHHHHHHHHHHHHHHHH
Q 011442 427 VGKV-VSTEYKVL---------GIDRLRVVDGSTY--DE---SPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 427 MG~V-VD~~~rV~---------G~~nL~VvDaSv~--P~---~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
|||+ ||.+++|. -++|||.+.-..- .. -.++|..+..+..+.++++.+.+.
T Consensus 400 ~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~ 465 (635)
T PLN00128 400 MGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEI 465 (635)
T ss_pred cCCcccCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 6775 89999983 4999999976431 11 124578888899999999887653
No 162
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=25.72 E-value=1.3e+02 Score=32.29 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=35.3
Q ss_pred ccCCCCeeec-----cCCceEee---cccCCC-CC-CCCchhHHHHHHHHHHHHHHHHhhh
Q 011442 430 VVSTEYKVLG-----IDRLRVVD---GSTYDE-SP-GTNPQGTVLMMGRYMGVKILRQRLG 480 (485)
Q Consensus 430 VVD~~~rV~G-----~~nL~VvD---aSv~P~-~~-~~np~~ti~alA~r~A~~i~~~~~~ 480 (485)
.+|.++||-. ++|||.+. ++++-. -+ .++.....+..+..+++++.+...+
T Consensus 509 ~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~ 569 (574)
T PRK12842 509 RTDVTGEVLDADGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGG 569 (574)
T ss_pred CCCCCceEECCCCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhcc
Confidence 4555555555 68999998 345422 12 3777888899999999998776544
No 163
>PRK11445 putative oxidoreductase; Provisional
Probab=25.70 E-value=2.1e+02 Score=28.48 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=36.7
Q ss_pred hhhhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchH
Q 011442 124 LLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTP 190 (485)
Q Consensus 124 ~l~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP 190 (485)
+|......+++++.++.|+.|..+++ . ..|.+. .+|...++.+ +-||.|.|+-...
T Consensus 104 ~L~~~~~~gv~v~~~~~v~~i~~~~~----~-~~v~~~-~~g~~~~i~a-----~~vV~AdG~~S~v 159 (351)
T PRK11445 104 WLKSLIPASVEVYHNSLCRKIWREDD----G-YHVIFR-ADGWEQHITA-----RYLVGADGANSMV 159 (351)
T ss_pred HHHHHHhcCCEEEcCCEEEEEEEcCC----E-EEEEEe-cCCcEEEEEe-----CEEEECCCCCcHH
Confidence 33333346899999999999976543 2 235553 2565555664 8999999975443
No 164
>PRK08244 hypothetical protein; Provisional
Probab=25.68 E-value=1.6e+02 Score=30.96 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=34.1
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+...+++|+.+++|++|..+++ .+ .|.+.+.+| ..++.+ +-||.|.|+-.
T Consensus 110 ~~~~gv~v~~~~~v~~i~~~~~----~v-~v~~~~~~g-~~~i~a-----~~vVgADG~~S 159 (493)
T PRK08244 110 ARSLGVEIFRGAEVLAVRQDGD----GV-EVVVRGPDG-LRTLTS-----SYVVGADGAGS 159 (493)
T ss_pred HHHcCCeEEeCCEEEEEEEcCC----eE-EEEEEeCCc-cEEEEe-----CEEEECCCCCh
Confidence 3345899999999999976543 33 245554345 345664 89999999843
No 165
>PRK08275 putative oxidoreductase; Provisional
Probab=25.48 E-value=90 Score=33.46 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=38.6
Q ss_pred cccccccccccCc-ccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 011442 417 TIWHYHGGCHVGK-VVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILR 476 (485)
Q Consensus 417 ~~~H~~GTc~MG~-VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~ 476 (485)
...|.+|+..||| .||.+++. .++|||.+.-.... +.|-.+..+.-+.++++.+.+
T Consensus 346 ~~~~~~g~~~~Ggi~~d~~~~t-~i~gl~a~Ge~~~~---~~~~~~~~~~~G~~a~~~~~~ 402 (554)
T PRK08275 346 SEIGFCSGHSASGVWVNEKAET-TVPGLYAAGDMASV---PHNYMLGAFTYGWFAGENAAE 402 (554)
T ss_pred CCceeecccccCcEEECCCCcc-CCCCEEECcccCCc---hhHHHHHHHHHHHHHHHHHHH
Confidence 3457778788987 77999996 79999988654321 245555566667777666543
No 166
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=25.44 E-value=51 Score=34.89 Aligned_cols=70 Identities=19% Similarity=0.383 Sum_probs=44.8
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHc------------
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS------------ 196 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~S------------ 196 (485)
..+||+|+-+ .|+.|+++++ .++.||... .|..+ . +|.|||++|++-.-+|..=+
T Consensus 112 ~~~NL~l~q~-~v~dli~e~~---~~v~GV~t~--~G~~~--~-----a~aVVlTTGTFL~G~I~iG~~~~~aGr~ge~~ 178 (621)
T COG0445 112 NQPNLHLLQG-EVEDLIVEEG---QRVVGVVTA--DGPEF--H-----AKAVVLTTGTFLRGKIHIGDTNYSAGRLGEPP 178 (621)
T ss_pred cCCCceehHh-hhHHHhhcCC---CeEEEEEeC--CCCee--e-----cCEEEEeecccccceEEeccccccCCCCCCcc
Confidence 4689998865 5667777554 379999874 56543 3 39999999997544433211
Q ss_pred CCCChHHhhhcCCce
Q 011442 197 GVGPKAELEKLNISV 211 (485)
Q Consensus 197 GIG~~~~L~~~GI~~ 211 (485)
.+|=++.|+++|.++
T Consensus 179 s~~Ls~~L~~lGf~l 193 (621)
T COG0445 179 SIGLSDRLRELGFKL 193 (621)
T ss_pred chHHHHHHHhcCcEE
Confidence 134446677777654
No 167
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=25.33 E-value=1.5e+02 Score=29.42 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=39.3
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC----------------CCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE----------------NGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~----------------~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
...++++++++.+.+|. ++ .++.+|++.+. .|+..++.+ +.||+|.|..-++.|
T Consensus 221 ~~~gi~i~~~~~v~~i~--~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----D~vi~a~G~~p~~~l 290 (352)
T PRK12770 221 IARGVEFLELVTPVRII--GE---GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEA-----DTVVFAIGEIPTPPF 290 (352)
T ss_pred HHcCCEEeeccCceeee--cC---CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEEC-----CEEEECcccCCCchh
Confidence 34589999999999875 22 25666765321 244445653 999999998877655
Q ss_pred HHH-cCC
Q 011442 193 LKL-SGV 198 (485)
Q Consensus 193 Ll~-SGI 198 (485)
+.. +|+
T Consensus 291 ~~~~~g~ 297 (352)
T PRK12770 291 AKECLGI 297 (352)
T ss_pred hhcccCc
Confidence 443 444
No 168
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=25.25 E-value=1.6e+02 Score=30.65 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=37.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC---------------CCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE---------------NGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~---------------~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
...++++++++.|.+|.-+++ ++++|++... .|...++.+ +.||+|.|..-...|+
T Consensus 322 ~~~GV~i~~~~~v~~i~~~~~----~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~-----D~vi~a~G~~p~~~l~ 392 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGDEG----RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPA-----DLVIKAIGQTPNPLIL 392 (457)
T ss_pred HHCCCEEEecCCcEEEEecCC----ceEEEEEEEEEecCcCCCCCcccCCCCceEEEEC-----CEEEECccCCCCchhh
Confidence 346899999999999864332 4577776421 233445553 8999999976554444
No 169
>PRK10015 oxidoreductase; Provisional
Probab=25.17 E-value=1.5e+02 Score=30.61 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=34.4
Q ss_pred hhh-hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 124 LLA-SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 124 ~l~-~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
+|. .+...+++++.+++|+.|..+++ ++++|.. ++ .++.+ +.||+|.|+
T Consensus 113 ~L~~~a~~~Gv~i~~~~~V~~i~~~~~----~v~~v~~---~~--~~i~A-----~~VI~AdG~ 162 (429)
T PRK10015 113 WLMEQAEQAGAQFIPGVRVDALVREGN----KVTGVQA---GD--DILEA-----NVVILADGV 162 (429)
T ss_pred HHHHHHHHcCCEEECCcEEEEEEEeCC----EEEEEEe---CC--eEEEC-----CEEEEccCc
Confidence 443 34456899999999999986543 6777653 22 24553 899999996
No 170
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=24.68 E-value=1.1e+02 Score=31.75 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=36.5
Q ss_pred EcCCCccccHHHh----hhhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCc
Q 011442 112 FDRFGRRHTAAEL----LASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAI 187 (485)
Q Consensus 112 ~~~~g~R~sa~~~----l~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai 187 (485)
+++.+.......+ ...+.+.+++|+.++.|+.|.. + ....|. ..+| ++.+ +.||+|+|+.
T Consensus 173 ~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~----~~~~v~--t~~g---~v~A-----~~VV~Atga~ 236 (460)
T TIGR03329 173 YSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--G----QPAVVR--TPDG---QVTA-----DKVVLALNAW 236 (460)
T ss_pred EeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--C----CceEEE--eCCc---EEEC-----CEEEEccccc
Confidence 3344444444432 2234557899999999999862 2 122343 2344 3553 8999999985
No 171
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=24.38 E-value=1.8e+02 Score=29.33 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=35.6
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
+...+++++.+++|+.|..+++ .++ |.+ .+|. ++.+ +.||.|.|.- | .+-...|+.
T Consensus 123 ~~~~gv~i~~~~~v~~i~~~~~----~v~-v~~--~~g~--~~~a-----~~vV~AdG~~-S-~vr~~~g~~ 178 (392)
T PRK08773 123 LHAAGVQLHCPARVVALEQDAD----RVR-LRL--DDGR--RLEA-----ALAIAADGAA-S-TLRELAGLP 178 (392)
T ss_pred HHhCCCEEEcCCeEEEEEecCC----eEE-EEE--CCCC--EEEe-----CEEEEecCCC-c-hHHHhhcCC
Confidence 3456899999999999986543 332 444 3454 3443 8999999973 3 344444443
No 172
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=24.32 E-value=1.9e+02 Score=28.88 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=29.7
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCc
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAI 187 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai 187 (485)
+|++++.+++|+.|..+++ .+ .|.+ .+|. ++.+ +.||.|.|+-
T Consensus 119 ~gv~~~~~~~v~~i~~~~~----~~-~v~~--~~g~--~~~a-----d~vV~AdG~~ 161 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQD----YV-RVTL--DNGQ--QLRA-----KLLIAADGAN 161 (382)
T ss_pred CCcEEEcCCeEEEEEEcCC----eE-EEEE--CCCC--EEEe-----eEEEEecCCC
Confidence 5999999999999976543 22 2443 3454 3443 8999999953
No 173
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=23.93 E-value=1.9e+02 Score=28.85 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=28.0
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCG 185 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAG 185 (485)
.+..++|+++++|+.+..++++ -.-+.+.+. .+...+..+ +.||||.|
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~~----~~~l~~~~~~~~~~~~~~~-----D~VilATG 338 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGDG----GVRLTLRHRQTGEEETLEV-----DAVILATG 338 (341)
T ss_dssp T---SEEETTEEEEEEEEES-S----SEEEEEEETTT--EEEEEE-----SEEEE---
T ss_pred CCCCeEEeCCCEEEEEEECCCC----EEEEEEEECCCCCeEEEec-----CEEEEcCC
Confidence 3457999999999999887631 223445542 455666664 99999998
No 174
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=23.87 E-value=1.4e+02 Score=30.41 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=34.9
Q ss_pred hhh-hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 124 LLA-SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 124 ~l~-~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
+|. .+...+.+++++++|+.+..+++ ..++++.. ++ .++++ |.||.|-|+
T Consensus 100 ~La~~A~~aGae~~~~~~~~~~~~~~~---~~~~~~~~---~~--~e~~a-----~~vI~AdG~ 150 (396)
T COG0644 100 WLAERAEEAGAELYPGTRVTGVIREDD---GVVVGVRA---GD--DEVRA-----KVVIDADGV 150 (396)
T ss_pred HHHHHHHHcCCEEEeceEEEEEEEeCC---cEEEEEEc---CC--EEEEc-----CEEEECCCc
Confidence 554 34567999999999999998875 24444432 22 55664 888888875
No 175
>TIGR00981 rpsL_bact ribosomal protein S12, bacterial/organelle. This model recognizes ribosomal protein S12 of Bacteria, mitochondria, and chloroplasts. The homologous ribosomal proteins of Archaea and Eukarya, termed S23 in Eukarya and S12 or S23 in Archaea, score below the trusted cutoff.
Probab=23.45 E-value=53 Score=27.23 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=16.4
Q ss_pred ceeecCccccccCccCCCceee
Q 011442 210 SVVLDNAHIGKGMADNPMNAVF 231 (485)
Q Consensus 210 ~~v~dlp~VG~nl~dH~~~~~~ 231 (485)
.+..=.|+.|.|||+|..+.+-
T Consensus 62 ~v~AyIPG~Ghnlqehs~VLvr 83 (124)
T TIGR00981 62 EVTAYIPGEGHNLQEHSVVLIR 83 (124)
T ss_pred EEEEEcCCCCCCccccCEEEEe
Confidence 3444568999999999876654
No 176
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=23.21 E-value=1.2e+02 Score=30.68 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=30.4
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCG 185 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAG 185 (485)
++.+++| .+++|++|....++ .....-|.+....+.....+ +.||||+=
T Consensus 136 ~~S~A~v-l~~~Vt~I~~~~~~-~~~~y~v~~~~~~~~~~~~y------D~VVIAtP 184 (368)
T PF07156_consen 136 EASGANV-LNTTVTSITRRSSD-GYSLYEVTYKSSSGTESDEY------DIVVIATP 184 (368)
T ss_pred HHccCcE-ecceeEEEEeccCC-CceeEEEEEecCCCCccccC------CEEEECCC
Confidence 4567888 89999999432222 13445666664334333444 89999875
No 177
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=23.06 E-value=92 Score=33.21 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=37.1
Q ss_pred hhh-hcCCCCe--EEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 124 LLA-SANPQKI--TVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 124 ~l~-~~~~~nl--~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
||. ++++-+| +|..+++|++|...++.....---|... .+|+..+-.. +.||+|.|....|.+=.
T Consensus 89 Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~-~~g~~~~~~f-----D~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 89 YLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE-NDGKEETEEF-----DAVVVATGHFSKPNIPE 156 (531)
T ss_dssp HHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET-TTTEEEEEEE-----CEEEEEE-SSSCESB--
T ss_pred HHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee-cCCeEEEEEe-----CeEEEcCCCcCCCCCCh
Confidence 664 3444455 7999999999987653210001123332 3454433222 78999999999998654
No 178
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.96 E-value=1.3e+02 Score=32.37 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=36.4
Q ss_pred cccCcc-cCCCCeee-----ccCCceEeecccCCC-----CCCCCchhHHHHHHHHHHHHHHH
Q 011442 425 CHVGKV-VSTEYKVL-----GIDRLRVVDGSTYDE-----SPGTNPQGTVLMMGRYMGVKILR 476 (485)
Q Consensus 425 c~MG~V-VD~~~rV~-----G~~nL~VvDaSv~P~-----~~~~np~~ti~alA~r~A~~i~~ 476 (485)
..|||| +|.+++|- .++|||.+.--.--. -.++|..+..+..+.++++.+.+
T Consensus 354 ~t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 416 (583)
T PRK08205 354 YAMGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAE 416 (583)
T ss_pred EECCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHH
Confidence 357776 89999983 699999987633211 12456777778788888877654
No 179
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=22.50 E-value=2e+02 Score=32.77 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=42.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
...+++|++++.|++|.-++. .....|.+. +|+. +.+ +.||+|+|..-...|+..+||
T Consensus 198 ~~~GV~v~~~~~v~~I~~~~~---~~~~~v~~~--dG~~--i~~-----D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 198 ESMGVRVHTSKNTLEIVQEGV---EARKTMRFA--DGSE--LEV-----DFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHCCCEEEcCCeEEEEEecCC---CceEEEEEC--CCCE--EEc-----CEEEECCCcccCchHHhhcCc
Confidence 456899999999999964332 245566663 5553 443 999999998888887777776
No 180
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.25 E-value=1.4e+02 Score=32.05 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=36.3
Q ss_pred ccCcc-cCCCCeee---------ccCCceEeeccc---CCC--CCCCCchhHHHHHHHHHHHHHHH
Q 011442 426 HVGKV-VSTEYKVL---------GIDRLRVVDGST---YDE--SPGTNPQGTVLMMGRYMGVKILR 476 (485)
Q Consensus 426 ~MG~V-VD~~~rV~---------G~~nL~VvDaSv---~P~--~~~~np~~ti~alA~r~A~~i~~ 476 (485)
-|||+ ||.+++|. -++|||-+.-.. +-. -.++|..+..+..+.++++.+.+
T Consensus 338 t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 403 (570)
T PRK05675 338 MMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEK 403 (570)
T ss_pred cCCCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHH
Confidence 36665 78888883 499999986532 111 23568888889999999888754
No 181
>PRK05163 rpsL 30S ribosomal protein S12; Validated
Probab=22.13 E-value=55 Score=27.13 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=16.3
Q ss_pred ceeecCccccccCccCCCceee
Q 011442 210 SVVLDNAHIGKGMADNPMNAVF 231 (485)
Q Consensus 210 ~~v~dlp~VG~nl~dH~~~~~~ 231 (485)
.+..=.|+.|.|||+|..+.+-
T Consensus 62 ~v~AyIPGeGhnlqehs~VLvr 83 (124)
T PRK05163 62 EVTAYIPGEGHNLQEHSVVLIR 83 (124)
T ss_pred EEEEEcCCCCCCccccCEEEEe
Confidence 3444468999999999876654
No 182
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=22.10 E-value=2.3e+02 Score=29.06 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=39.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
++..+++++++++|++|. ++ .+..+|.. ++. ++.+ +.||+|.|..-...+|..+|+.
T Consensus 201 l~~~gI~v~~~~~v~~i~--~~---~~~~~v~~---~~~--~i~~-----d~vi~a~G~~p~~~~l~~~gl~ 257 (444)
T PRK09564 201 LRENGVELHLNEFVKSLI--GE---DKVEGVVT---DKG--EYEA-----DVVIVATGVKPNTEFLEDTGLK 257 (444)
T ss_pred HHHCCCEEEcCCEEEEEe--cC---CcEEEEEe---CCC--EEEc-----CEEEECcCCCcCHHHHHhcCcc
Confidence 345689999999999984 22 24445543 232 3443 8999999987667788877763
No 183
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=21.98 E-value=1.5e+02 Score=29.45 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=28.9
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
.+++|+.++.|+.|. . . +|+. .+|. +.+ +.||+|+|+ .+..|
T Consensus 159 ~Gv~i~~~t~V~~i~--~----~---~v~t--~~g~---i~a-----~~VV~A~G~-~s~~l 200 (365)
T TIGR03364 159 HGVEFHWNTAVTSVE--T----G---TVRT--SRGD---VHA-----DQVFVCPGA-DFETL 200 (365)
T ss_pred CCCEEEeCCeEEEEe--c----C---eEEe--CCCc---EEe-----CEEEECCCC-Chhhh
Confidence 589999999999984 1 1 3433 2443 343 899999998 45544
No 184
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=21.93 E-value=1.3e+02 Score=32.36 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=34.0
Q ss_pred ccCc-ccCCCCeeec-----cCCceEeec---ccCCC-C-CCCCchhHHHHHHHHHHHHHHH
Q 011442 426 HVGK-VVSTEYKVLG-----IDRLRVVDG---STYDE-S-PGTNPQGTVLMMGRYMGVKILR 476 (485)
Q Consensus 426 ~MG~-VVD~~~rV~G-----~~nL~VvDa---Sv~P~-~-~~~np~~ti~alA~r~A~~i~~ 476 (485)
.||| .+|.++||.+ ++|||.+.. +++-. - .+++.....+..+..+++++.+
T Consensus 508 T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~ 569 (581)
T PRK06134 508 TFAGLKTDADARVLDQAGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAG 569 (581)
T ss_pred cCCCccCCCCCceECCCCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhh
Confidence 3454 4566666665 789999983 44421 1 2466777888888888888765
No 185
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=21.81 E-value=1.2e+02 Score=32.68 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=36.7
Q ss_pred cccCcc-cCCCCeee---------ccCCceEeecccC---CC--CCCCCchhHHHHHHHHHHHHHHHH
Q 011442 425 CHVGKV-VSTEYKVL---------GIDRLRVVDGSTY---DE--SPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 425 c~MG~V-VD~~~rV~---------G~~nL~VvDaSv~---P~--~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
..|||| ||.+++|. -++|||.+.--.- -. -.++|..+-.+..+.++++.+.+.
T Consensus 355 ~t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 422 (588)
T PRK08958 355 YMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQES 422 (588)
T ss_pred EeCCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Confidence 346775 88888883 4999999876321 11 234677788888888888877543
No 186
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=21.31 E-value=1.9e+02 Score=29.94 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
...+++++++++|++|.-++ ....|++.. .+...++.+ +.||+|.|..-...
T Consensus 218 ~~~gV~i~~~~~V~~i~~~~-----~~~~v~~~~-~~~~~~i~~-----D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 218 AEEGIEVVTSAQVKAVSVRG-----GGKIITVEK-PGGQGEVEA-----DELLVATGRRPNTD 269 (463)
T ss_pred HHcCCEEEcCcEEEEEEEcC-----CEEEEEEEe-CCCceEEEe-----CEEEEeECCCcCCC
Confidence 45689999999999987542 223345432 233345554 89999999654433
No 187
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=21.21 E-value=79 Score=32.00 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=38.0
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.-||+++.- .+|..++-++ +.+.||.|.+..|+..+.+| .--|+|-|.+..
T Consensus 159 slpNV~~ee-GtV~sLlee~----gvvkGV~yk~k~gee~~~~A-----pLTvVCDGcfSn 209 (509)
T KOG1298|consen 159 SLPNVRLEE-GTVKSLLEEE----GVVKGVTYKNKEGEEVEAFA-----PLTVVCDGCFSN 209 (509)
T ss_pred cCCCeEEee-eeHHHHHhcc----CeEEeEEEecCCCceEEEec-----ceEEEecchhHH
Confidence 458998764 4566666454 38999999987777777664 789999998743
No 188
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=21.13 E-value=2.1e+02 Score=24.57 Aligned_cols=43 Identities=30% Similarity=0.351 Sum_probs=25.1
Q ss_pred CCCeEE-EccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 130 PQKITV-LIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 130 ~~nl~v-~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
+.+++| ....+|+.|...++ . ..+...+|... .+ +.||||.|.
T Consensus 112 ~~~i~v~~~~~~V~~i~~~~~----~---~~v~~~~g~~~--~~-----d~VvLa~Gh 155 (156)
T PF13454_consen 112 PAGITVRHVRAEVVDIRRDDD----G---YRVVTADGQSI--RA-----DAVVLATGH 155 (156)
T ss_pred cCCcEEEEEeeEEEEEEEcCC----c---EEEEECCCCEE--Ee-----CEEEECCCC
Confidence 344433 24568888877654 1 12233466543 33 999999983
No 189
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=20.88 E-value=2.1e+02 Score=29.53 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=31.6
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCC-CCeeEEEecCCCCceEEEecCCc
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN-GNQHQAFLAGNPKSEVILSCGAI 187 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~-g~~~~v~a~~~a~keVILaAGai 187 (485)
.+.|++++.+++|++|..+.. .|.+.+.. +...++.. +.+|||.|+-
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~-------~v~~~~~~~~~~~~~~y-----d~lviAtGs~ 116 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQ-------TVTVLNRKTNEQFEESY-----DKLILSPGAS 116 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCC-------EEEEEECCCCcEEeeec-----CEEEECCCCC
Confidence 346899999999999965532 34554322 33334432 8999999975
No 190
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=20.88 E-value=1.9e+02 Score=29.94 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=35.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
..-+.+++.+++|+.|++.++ .+.+|... +|.. +.+ ++||||-|--+.
T Consensus 184 ~~~G~ei~f~t~VeDi~~~~~----~~~~v~~~--~g~~--i~~-----~~vvlA~Grsg~ 231 (486)
T COG2509 184 ESLGGEIRFNTEVEDIEIEDN----EVLGVKLT--KGEE--IEA-----DYVVLAPGRSGR 231 (486)
T ss_pred HhcCcEEEeeeEEEEEEecCC----ceEEEEcc--CCcE--Eec-----CEEEEccCcchH
Confidence 344699999999999999875 46677664 4543 443 999999995433
No 191
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=20.83 E-value=1.3e+02 Score=32.23 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=35.7
Q ss_pred ccCcc-cCCCCee--------eccCCceEeecccCCCC-----CCCCchhHHHHHHHHHHHHHHH
Q 011442 426 HVGKV-VSTEYKV--------LGIDRLRVVDGSTYDES-----PGTNPQGTVLMMGRYMGVKILR 476 (485)
Q Consensus 426 ~MG~V-VD~~~rV--------~G~~nL~VvDaSv~P~~-----~~~np~~ti~alA~r~A~~i~~ 476 (485)
.|||+ +|.+++| -.++|||-+.--.--.. .++|..+-.+..+.++++.+.+
T Consensus 330 t~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~ 394 (565)
T TIGR01816 330 NMGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAE 394 (565)
T ss_pred ecCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 37776 8999998 24999999876432111 2356777778888888887754
No 192
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.65 E-value=2.4e+02 Score=29.21 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=34.4
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
...+++++++++|++|.-+++ . ..|.+.+ +|...++.+ +.||+|.|..-...+
T Consensus 224 ~~~gV~i~~~~~V~~i~~~~~----~-v~v~~~~-gg~~~~i~~-----D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQTDD----G-VTVTLED-GGKEETLEA-----DYVLVAVGRRPNTEN 276 (462)
T ss_pred HHcCCEEEeCCEEEEEEEeCC----E-EEEEEEe-CCeeEEEEe-----CEEEEeeCCccCCCC
Confidence 346899999999999975432 2 2244432 344445554 899999997654444
No 193
>PRK06370 mercuric reductase; Validated
Probab=20.52 E-value=2.2e+02 Score=29.63 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=33.9
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
+...+++++++++|.+|.-+++ . ..|.+.. .+...++.+ +.||+|.|..-...
T Consensus 222 l~~~GV~i~~~~~V~~i~~~~~----~-~~v~~~~-~~~~~~i~~-----D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 222 LEREGIDVRLNAECIRVERDGD----G-IAVGLDC-NGGAPEITG-----SHILVAVGRVPNTD 274 (463)
T ss_pred HHhCCCEEEeCCEEEEEEEcCC----E-EEEEEEe-CCCceEEEe-----CEEEECcCCCcCCC
Confidence 3457899999999999975432 1 2344432 222334553 89999999654444
No 194
>PRK06834 hypothetical protein; Provisional
Probab=20.45 E-value=2.4e+02 Score=29.72 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=32.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+...+++|..+++|+.|..+++ +|.+...+|. ++.+ +-||.|.|+--
T Consensus 110 l~~~gv~i~~~~~v~~v~~~~~-------~v~v~~~~g~--~i~a-----~~vVgADG~~S 156 (488)
T PRK06834 110 VGELGVPIYRGREVTGFAQDDT-------GVDVELSDGR--TLRA-----QYLVGCDGGRS 156 (488)
T ss_pred HHhCCCEEEcCCEEEEEEEcCC-------eEEEEECCCC--EEEe-----CEEEEecCCCC
Confidence 3445899999999999987653 2333323453 4554 89999999843
No 195
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=20.33 E-value=42 Score=16.18 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=5.8
Q ss_pred cccccCccc
Q 011442 423 GGCHVGKVV 431 (485)
Q Consensus 423 GTc~MG~VV 431 (485)
||=.|||++
T Consensus 3 gTPTMGGi~ 11 (13)
T PF10555_consen 3 GTPTMGGIV 11 (13)
T ss_pred CCccceeEE
Confidence 566677764
No 196
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=20.10 E-value=2.5e+02 Score=30.16 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=38.6
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-------C-------CCCeeEEEecCCCCceEEEecCCcchHHHHHH
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-------E-------NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 195 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-------~-------~g~~~~v~a~~~a~keVILaAGai~TP~LLl~ 195 (485)
..+++|++++.+.+|+-+++ +++ ||++.. . .|...++.+ +.||+|.|..-.+.+|..
T Consensus 317 ~~GVki~~~~~~~~i~~~~~---~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~-----D~Vi~A~G~~p~~~~~~~ 387 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDEN---GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEA-----DLVVLAIGQDIDSAGLES 387 (564)
T ss_pred HcCCEEEecCCcEEEEcCCC---CEE-EEEEEEEEecccCCCCCeeecCCceEEEEC-----CEEEECcCCCCchhhhhh
Confidence 46899999999999975433 244 766521 1 233345553 899999997655556552
Q ss_pred -cCC
Q 011442 196 -SGV 198 (485)
Q Consensus 196 -SGI 198 (485)
+|+
T Consensus 388 ~~gl 391 (564)
T PRK12771 388 VPGV 391 (564)
T ss_pred ccCc
Confidence 444
Done!