Query 011442
Match_columns 485
No_of_seqs 245 out of 1266
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 08:13:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fim_B ARYL-alcohol oxidase; A 100.0 1.6E-83 5.4E-88 677.6 29.5 448 5-478 60-566 (566)
2 3qvp_A Glucose oxidase; oxidor 100.0 1.8E-81 6.1E-86 662.8 29.0 433 5-478 77-579 (583)
3 1ju2_A HydroxynitrIle lyase; f 100.0 8.7E-78 3E-82 634.1 30.6 433 8-483 82-522 (536)
4 3q9t_A Choline dehydrogenase a 100.0 2.7E-77 9.2E-82 631.5 30.8 430 16-478 71-573 (577)
5 1gpe_A Protein (glucose oxidas 100.0 4.7E-76 1.6E-80 626.5 24.5 445 9-479 86-584 (587)
6 3t37_A Probable dehydrogenase; 100.0 9.2E-73 3.1E-77 597.2 30.5 417 6-475 74-521 (526)
7 2jbv_A Choline oxidase; alcoho 100.0 2.6E-72 8.7E-77 593.7 28.4 420 7-478 72-530 (546)
8 1kdg_A CDH, cellobiose dehydro 100.0 3.6E-62 1.2E-66 517.9 21.4 412 20-477 84-542 (546)
9 1n4w_A CHOD, cholesterol oxida 100.0 1E-60 3.6E-65 501.1 20.0 371 17-480 95-502 (504)
10 1coy_A Cholesterol oxidase; ox 100.0 1.7E-59 5.9E-64 491.9 19.2 374 17-480 100-507 (507)
11 3pl8_A Pyranose 2-oxidase; sub 100.0 3.3E-43 1.1E-47 375.8 22.1 403 25-484 157-619 (623)
12 4at0_A 3-ketosteroid-delta4-5a 96.0 0.0092 3.2E-07 61.7 7.2 62 126-195 210-272 (510)
13 1d4d_A Flavocytochrome C fumar 94.2 0.067 2.3E-06 56.1 7.1 61 127-195 264-325 (572)
14 1qo8_A Flavocytochrome C3 fuma 93.8 0.08 2.7E-06 55.4 6.6 55 128-190 260-314 (566)
15 1y0p_A Fumarate reductase flav 93.5 0.1 3.5E-06 54.6 6.9 59 127-193 264-323 (571)
16 2h88_A Succinate dehydrogenase 93.5 0.17 5.8E-06 53.4 8.5 54 127-189 164-218 (621)
17 2rgh_A Alpha-glycerophosphate 93.2 0.14 4.6E-06 53.7 7.1 61 128-198 198-259 (571)
18 3da1_A Glycerol-3-phosphate de 92.5 0.23 7.9E-06 51.8 7.7 62 128-199 180-242 (561)
19 2wdq_A Succinate dehydrogenase 92.5 0.18 6.3E-06 52.9 6.9 54 128-189 153-207 (588)
20 3dme_A Conserved exported prot 91.5 0.19 6.5E-06 48.7 5.4 61 127-199 159-220 (369)
21 2bs2_A Quinol-fumarate reducta 91.3 0.4 1.4E-05 51.0 8.0 53 128-189 168-221 (660)
22 1chu_A Protein (L-aspartate ox 90.8 0.44 1.5E-05 49.4 7.6 54 131-189 152-209 (540)
23 1kf6_A Fumarate reductase flav 90.3 0.57 2E-05 49.2 8.0 53 129-190 146-199 (602)
24 4dgk_A Phytoene dehydrogenase; 89.7 0.33 1.1E-05 49.5 5.4 55 128-195 231-285 (501)
25 3dje_A Fructosyl amine: oxygen 87.7 0.33 1.1E-05 48.6 3.8 52 128-193 171-225 (438)
26 3gyx_A Adenylylsulfate reducta 87.3 0.58 2E-05 49.8 5.4 51 132-188 182-233 (662)
27 1y56_B Sarcosine oxidase; dehy 86.5 0.65 2.2E-05 45.3 5.0 56 128-198 159-214 (382)
28 1jnr_A Adenylylsulfate reducta 86.2 1.1 3.6E-05 47.6 6.8 52 132-189 166-219 (643)
29 3ka7_A Oxidoreductase; structu 85.8 0.79 2.7E-05 45.4 5.4 53 128-194 206-258 (425)
30 3e1t_A Halogenase; flavoprotei 85.6 1.6 5.5E-05 44.7 7.7 51 128-187 121-171 (512)
31 2i0z_A NAD(FAD)-utilizing dehy 85.5 1.1 3.7E-05 45.1 6.2 52 127-191 143-194 (447)
32 1rp0_A ARA6, thiazole biosynth 85.3 3.4 0.00012 38.5 9.2 49 129-186 131-189 (284)
33 2qcu_A Aerobic glycerol-3-phos 84.8 1.4 4.6E-05 45.1 6.7 56 128-194 159-215 (501)
34 3axb_A Putative oxidoreductase 84.6 0.83 2.8E-05 45.8 4.9 56 128-197 191-262 (448)
35 3nyc_A D-arginine dehydrogenas 84.1 0.97 3.3E-05 43.8 5.0 55 128-198 164-218 (381)
36 2gag_B Heterotetrameric sarcos 83.5 1.1 3.8E-05 43.9 5.2 56 128-198 184-239 (405)
37 3atr_A Conserved archaeal prot 83.5 1.4 4.9E-05 44.2 6.1 52 128-188 110-162 (453)
38 3cty_A Thioredoxin reductase; 81.5 1.7 5.9E-05 41.0 5.5 60 130-198 202-262 (319)
39 3f8d_A Thioredoxin reductase ( 80.9 4.9 0.00017 37.5 8.5 60 129-198 201-261 (323)
40 2oln_A NIKD protein; flavoprot 80.2 2.5 8.5E-05 41.3 6.3 53 128-196 163-215 (397)
41 3ab1_A Ferredoxin--NADP reduct 79.7 4 0.00014 39.2 7.6 60 130-198 214-273 (360)
42 3cgv_A Geranylgeranyl reductas 77.4 4.3 0.00015 39.4 7.1 51 128-188 112-162 (397)
43 3nlc_A Uncharacterized protein 77.2 2 6.8E-05 44.5 4.7 48 129-189 231-278 (549)
44 1fl2_A Alkyl hydroperoxide red 75.6 4.3 0.00015 37.9 6.3 55 131-194 193-248 (310)
45 3ps9_A TRNA 5-methylaminomethy 75.5 2 6.9E-05 45.7 4.3 53 128-195 427-479 (676)
46 3r9u_A Thioredoxin reductase; 75.3 4.3 0.00015 37.9 6.2 57 129-194 194-250 (315)
47 2zxi_A TRNA uridine 5-carboxym 74.3 2.1 7.1E-05 45.0 3.9 47 131-191 137-183 (637)
48 1pj5_A N,N-dimethylglycine oxi 74.2 2.9 9.9E-05 45.7 5.2 56 128-198 161-216 (830)
49 3itj_A Thioredoxin reductase 1 73.2 4.3 0.00015 38.3 5.7 56 130-194 221-277 (338)
50 1trb_A Thioredoxin reductase; 73.1 5.4 0.00019 37.4 6.3 58 128-194 194-253 (320)
51 3lxd_A FAD-dependent pyridine 71.4 5.6 0.00019 39.2 6.2 58 129-199 205-262 (415)
52 3fg2_P Putative rubredoxin red 71.0 5.5 0.00019 39.1 6.0 58 129-199 195-252 (404)
53 3nix_A Flavoprotein/dehydrogen 69.9 8.4 0.00029 37.7 7.1 50 128-187 116-165 (421)
54 3ces_A MNMG, tRNA uridine 5-ca 69.3 3.4 0.00012 43.5 4.1 45 131-189 138-182 (651)
55 1mo9_A ORF3; nucleotide bindin 69.2 8.1 0.00028 39.5 7.0 61 129-198 266-327 (523)
56 1ryi_A Glycine oxidase; flavop 68.4 3.5 0.00012 39.9 3.9 54 128-197 174-227 (382)
57 2q0l_A TRXR, thioredoxin reduc 68.0 9.4 0.00032 35.5 6.7 58 130-196 191-249 (311)
58 2cul_A Glucose-inhibited divis 66.5 12 0.00041 33.4 6.8 47 131-191 82-128 (232)
59 3pvc_A TRNA 5-methylaminomethy 66.1 2.9 9.9E-05 44.6 2.9 54 128-195 422-475 (689)
60 3v76_A Flavoprotein; structura 65.7 8 0.00028 38.3 5.9 50 127-191 141-190 (417)
61 2gmh_A Electron transfer flavo 65.4 13 0.00044 38.6 7.7 54 128-189 154-218 (584)
62 2gf3_A MSOX, monomeric sarcosi 65.3 5.4 0.00019 38.6 4.6 52 128-195 160-211 (389)
63 1vdc_A NTR, NADPH dependent th 65.0 12 0.00043 35.0 7.0 59 129-194 206-265 (333)
64 1hyu_A AHPF, alkyl hydroperoxi 64.4 9.6 0.00033 39.0 6.4 54 131-193 404-458 (521)
65 2q7v_A Thioredoxin reductase; 63.9 11 0.00039 35.2 6.5 56 129-194 199-255 (325)
66 3i3l_A Alkylhalidase CMLS; fla 62.3 6.5 0.00022 41.0 4.6 49 128-186 138-186 (591)
67 3p1w_A Rabgdi protein; GDI RAB 61.8 7.5 0.00026 39.3 4.9 48 128-187 266-313 (475)
68 2uzz_A N-methyl-L-tryptophan o 61.7 5 0.00017 38.6 3.5 49 128-192 159-207 (372)
69 3lzw_A Ferredoxin--NADP reduct 61.0 8.8 0.0003 35.9 5.1 60 129-198 200-260 (332)
70 3jsk_A Cypbp37 protein; octame 60.4 28 0.00096 33.4 8.4 55 129-188 172-251 (344)
71 2e5v_A L-aspartate oxidase; ar 60.4 5.5 0.00019 40.2 3.6 48 128-188 129-176 (472)
72 2zbw_A Thioredoxin reductase; 60.4 14 0.00048 34.7 6.4 60 129-198 202-262 (335)
73 3nrn_A Uncharacterized protein 60.3 7.2 0.00025 38.4 4.4 51 128-194 199-249 (421)
74 2gqf_A Hypothetical protein HI 59.1 7.6 0.00026 38.2 4.3 77 127-216 118-194 (401)
75 3c4n_A Uncharacterized protein 57.1 4.5 0.00016 39.8 2.3 56 127-198 181-246 (405)
76 2ywl_A Thioredoxin reductase r 52.3 19 0.00066 30.3 5.3 53 128-198 66-118 (180)
77 1yvv_A Amine oxidase, flavin-c 50.5 13 0.00044 35.0 4.2 49 132-193 119-167 (336)
78 3s5w_A L-ornithine 5-monooxyge 50.0 16 0.00055 36.3 5.1 59 124-191 132-193 (463)
79 3oz2_A Digeranylgeranylglycero 49.6 32 0.0011 32.8 7.1 51 128-189 112-162 (397)
80 2v3a_A Rubredoxin reductase; a 49.1 28 0.00095 33.6 6.5 58 128-199 197-254 (384)
81 2gjc_A Thiazole biosynthetic e 48.4 34 0.0012 32.6 6.7 33 129-161 158-192 (326)
82 3iwa_A FAD-dependent pyridine 47.2 28 0.00095 34.8 6.4 57 128-198 212-268 (472)
83 2bcg_G Secretory pathway GDP d 46.8 20 0.00068 35.7 5.1 47 128-187 252-299 (453)
84 3cp8_A TRNA uridine 5-carboxym 45.8 30 0.001 36.3 6.4 46 130-189 130-175 (641)
85 3s5w_A L-ornithine 5-monooxyge 45.8 47 0.0016 32.8 7.8 49 131-189 329-378 (463)
86 3ef6_A Toluene 1,2-dioxygenase 45.5 16 0.00055 35.8 4.2 57 129-199 196-252 (410)
87 1q1r_A Putidaredoxin reductase 44.5 25 0.00087 34.7 5.5 59 129-199 202-261 (431)
88 3hyw_A Sulfide-quinone reducta 43.3 24 0.00082 34.8 5.1 52 430-481 276-335 (430)
89 4a9w_A Monooxygenase; baeyer-v 42.8 16 0.00053 34.5 3.5 52 129-194 87-138 (357)
90 4dgk_A Phytoene dehydrogenase; 42.8 9.5 0.00032 38.4 2.0 43 434-480 451-493 (501)
91 2qae_A Lipoamide, dihydrolipoy 42.5 34 0.0012 34.1 6.1 60 129-198 227-288 (468)
92 2xve_A Flavin-containing monoo 42.0 24 0.00081 35.3 4.8 59 131-197 114-175 (464)
93 2a87_A TRXR, TR, thioredoxin r 40.9 16 0.00056 34.3 3.3 55 129-193 202-257 (335)
94 3ic9_A Dihydrolipoamide dehydr 40.3 35 0.0012 34.3 5.9 50 133-192 229-278 (492)
95 3qj4_A Renalase; FAD/NAD(P)-bi 40.3 15 0.00051 34.8 2.9 48 132-193 123-170 (342)
96 2qa1_A PGAE, polyketide oxygen 39.9 51 0.0017 33.2 7.0 51 128-189 116-166 (500)
97 4g6h_A Rotenone-insensitive NA 39.4 17 0.00058 36.9 3.3 44 430-476 354-398 (502)
98 2x3n_A Probable FAD-dependent 39.0 36 0.0012 32.8 5.6 46 131-189 121-167 (399)
99 2qa2_A CABE, polyketide oxygen 38.7 54 0.0019 33.0 7.0 51 128-189 117-167 (499)
100 3urh_A Dihydrolipoyl dehydroge 38.1 60 0.0021 32.4 7.2 60 129-198 250-312 (491)
101 2bry_A NEDD9 interacting prote 37.9 14 0.00048 37.4 2.4 57 128-191 176-233 (497)
102 2vvm_A Monoamine oxidase N; FA 36.3 30 0.001 34.6 4.6 46 132-191 270-315 (495)
103 1y0p_A Fumarate reductase flav 36.2 24 0.0008 36.4 3.8 53 425-477 505-567 (571)
104 1d5t_A Guanine nucleotide diss 35.9 28 0.00097 34.3 4.2 44 130-187 246-289 (433)
105 1m6i_A Programmed cell death p 35.7 50 0.0017 33.2 6.1 58 128-199 236-293 (493)
106 1k0i_A P-hydroxybenzoate hydro 35.6 41 0.0014 32.3 5.3 50 130-189 115-164 (394)
107 3lov_A Protoporphyrinogen oxid 35.2 27 0.00091 34.8 4.0 47 133-194 249-295 (475)
108 1vg0_A RAB proteins geranylger 34.3 54 0.0019 34.4 6.1 48 128-186 388-435 (650)
109 3dgh_A TRXR-1, thioredoxin red 33.6 51 0.0017 32.9 5.8 56 129-193 238-294 (483)
110 1sez_A Protoporphyrinogen oxid 33.2 16 0.00054 36.8 1.9 56 133-193 256-313 (504)
111 2e4g_A Tryptophan halogenase; 32.8 46 0.0016 34.0 5.3 43 131-186 208-250 (550)
112 3nks_A Protoporphyrinogen oxid 32.2 26 0.0009 34.8 3.3 50 130-193 246-295 (477)
113 2hqm_A GR, grase, glutathione 32.1 35 0.0012 34.2 4.2 59 129-198 237-296 (479)
114 3i6d_A Protoporphyrinogen oxid 31.7 40 0.0014 33.1 4.6 47 133-193 248-294 (470)
115 2eq6_A Pyruvate dehydrogenase 31.6 77 0.0026 31.4 6.7 59 129-198 221-283 (464)
116 2weu_A Tryptophan 5-halogenase 31.4 40 0.0014 33.9 4.6 46 128-186 183-228 (511)
117 3ihg_A RDME; flavoenzyme, anth 30.6 81 0.0028 31.9 6.8 52 128-188 130-183 (535)
118 2jae_A L-amino acid oxidase; o 30.4 73 0.0025 31.6 6.3 43 133-186 252-294 (489)
119 3l8k_A Dihydrolipoyl dehydroge 29.8 43 0.0015 33.3 4.4 57 133-198 226-283 (466)
120 2gag_A Heterotetrameric sarcos 28.9 69 0.0024 35.4 6.2 60 130-197 328-392 (965)
121 1xdi_A RV3303C-LPDA; reductase 28.2 38 0.0013 34.1 3.7 50 129-192 234-283 (499)
122 3dgz_A Thioredoxin reductase 2 28.1 76 0.0026 31.7 6.0 55 129-192 236-291 (488)
123 3hyw_A Sulfide-quinone reducta 28.1 97 0.0033 30.3 6.7 55 129-198 211-265 (430)
124 2gv8_A Monooxygenase; FMO, FAD 27.2 45 0.0015 32.9 4.0 52 132-193 129-182 (447)
125 3f8d_A Thioredoxin reductase ( 27.0 73 0.0025 29.1 5.3 49 430-481 270-319 (323)
126 1qo8_A Flavocytochrome C3 fuma 26.6 46 0.0016 34.1 4.1 53 425-477 500-562 (566)
127 2vqe_L 30S ribosomal protein S 26.3 27 0.00093 28.1 1.7 24 208-231 63-86 (135)
128 3lad_A Dihydrolipoamide dehydr 26.1 58 0.002 32.3 4.6 52 129-191 232-283 (476)
129 4at0_A 3-ketosteroid-delta4-5a 25.9 41 0.0014 34.0 3.5 52 425-476 447-508 (510)
130 2a8x_A Dihydrolipoyl dehydroge 25.8 89 0.003 30.9 6.0 59 129-198 223-283 (464)
131 3fmw_A Oxygenase; mithramycin, 25.7 54 0.0019 33.7 4.4 49 129-188 159-207 (570)
132 1y56_A Hypothetical protein PH 25.5 52 0.0018 33.1 4.1 54 131-198 270-323 (493)
133 3k7m_X 6-hydroxy-L-nicotine ox 25.2 62 0.0021 31.4 4.6 43 129-186 215-257 (431)
134 2dkh_A 3-hydroxybenzoate hydro 25.1 1E+02 0.0035 32.0 6.5 53 132-190 157-213 (639)
135 1zmd_A Dihydrolipoyl dehydroge 24.9 1E+02 0.0035 30.5 6.2 61 129-198 231-294 (474)
136 2r0c_A REBC; flavin adenine di 24.8 1.6E+02 0.0056 29.8 7.9 46 135-190 152-198 (549)
137 2yqu_A 2-oxoglutarate dehydrog 24.7 84 0.0029 30.9 5.5 50 129-192 219-268 (455)
138 1v59_A Dihydrolipoamide dehydr 24.7 85 0.0029 31.1 5.6 55 129-191 235-290 (478)
139 4dna_A Probable glutathione re 24.5 41 0.0014 33.4 3.1 58 128-198 221-280 (463)
140 4gut_A Lysine-specific histone 24.4 96 0.0033 33.3 6.2 39 132-184 543-581 (776)
141 3o0h_A Glutathione reductase; 24.4 71 0.0024 31.9 4.9 56 129-198 243-300 (484)
142 1dxl_A Dihydrolipoamide dehydr 24.2 54 0.0018 32.5 3.9 54 129-192 229-283 (470)
143 3gwf_A Cyclohexanone monooxyge 24.1 39 0.0013 34.5 2.9 54 129-194 98-153 (540)
144 1fec_A Trypanothione reductase 23.6 62 0.0021 32.4 4.3 58 128-198 241-300 (490)
145 2wpf_A Trypanothione reductase 23.6 66 0.0023 32.3 4.5 57 129-198 246-304 (495)
146 1d4d_A Flavocytochrome C fumar 23.4 50 0.0017 34.0 3.6 53 425-477 505-568 (572)
147 2ivd_A PPO, PPOX, protoporphyr 23.2 69 0.0023 31.7 4.5 49 133-193 250-299 (478)
148 1gte_A Dihydropyrimidine dehyd 23.0 1.3E+02 0.0043 33.5 7.0 60 130-198 382-454 (1025)
149 3cgb_A Pyridine nucleotide-dis 22.8 74 0.0025 31.7 4.7 55 129-198 238-292 (480)
150 3dk9_A Grase, GR, glutathione 22.7 1.2E+02 0.0039 30.2 6.1 62 129-198 239-305 (478)
151 1b37_A Protein (polyamine oxid 22.5 79 0.0027 31.3 4.8 39 440-480 422-460 (472)
152 2r9z_A Glutathione amide reduc 22.5 1.1E+02 0.0038 30.2 5.9 57 129-198 218-276 (463)
153 4b63_A L-ornithine N5 monooxyg 22.2 81 0.0028 31.7 4.8 58 124-186 150-212 (501)
154 2aqj_A Tryptophan halogenase, 22.1 64 0.0022 32.7 4.1 47 128-187 175-221 (538)
155 3uox_A Otemo; baeyer-villiger 21.8 66 0.0022 32.9 4.1 43 124-185 344-388 (545)
156 2h88_A Succinate dehydrogenase 21.7 69 0.0024 33.4 4.2 53 425-477 365-431 (621)
157 3d1c_A Flavin-containing putat 21.6 1.2E+02 0.0041 28.4 5.8 56 130-198 226-282 (369)
158 3d1c_A Flavin-containing putat 21.4 92 0.0031 29.3 4.9 47 129-190 99-145 (369)
159 1ojt_A Surface protein; redox- 21.2 1E+02 0.0036 30.6 5.4 58 129-198 237-298 (482)
160 1ebd_A E3BD, dihydrolipoamide 21.0 1.1E+02 0.0037 30.1 5.4 53 129-192 222-274 (455)
161 2bs2_A Quinol-fumarate reducta 20.9 82 0.0028 33.1 4.7 51 426-477 371-427 (660)
162 3ntd_A FAD-dependent pyridine 20.8 1.4E+02 0.0049 30.2 6.5 62 128-199 202-278 (565)
163 3gwf_A Cyclohexanone monooxyge 20.7 68 0.0023 32.7 3.9 45 124-186 336-382 (540)
164 4ap3_A Steroid monooxygenase; 20.6 46 0.0016 34.1 2.6 55 130-196 111-167 (549)
165 1ges_A Glutathione reductase; 20.4 85 0.0029 30.9 4.5 57 129-198 219-277 (450)
166 2cdu_A NADPH oxidase; flavoenz 20.0 83 0.0028 30.9 4.3 52 128-193 201-252 (452)
No 1
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=100.00 E-value=1.6e-83 Score=677.65 Aligned_cols=448 Identities=20% Similarity=0.301 Sum_probs=330.5
Q ss_pred CCCCCCcccccccCCceeecCcccccchhhhcccccccCChhh---h----hcCCCChhhhccccccchhcccc------
Q 011442 5 DTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQF---I----ERMGWDAKLVNESFPWVERQIVH------ 71 (485)
Q Consensus 5 ~~~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~---~----~~~gW~~~~l~~~~~~~e~~~~~------ 71 (485)
+....|+||+.++++.+.|+|||+|||||+||+|+|+|+++++ | ++.||+|++++|||+|+|+....
T Consensus 60 ~w~~~t~pq~~~~~r~~~~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~ 139 (566)
T 3fim_B 60 DWNYTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNT 139 (566)
T ss_dssp BCCCBCCCCGGGTTCCCBCCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCC
T ss_pred ccccccccCCCCCCceEeccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccc
Confidence 4567899999999999999999999999999999999999854 3 35789999999999999986421
Q ss_pred --------C-----------CCchhhHHHHHHHHHhC--CCCCCCCCccCCCCceeeeeeEE---cCCCccccHHH-hhh
Q 011442 72 --------Q-----------PKQEGWQKALRDSLLDV--GVSPFNGFTYDHIYGTKIGGTIF---DRFGRRHTAAE-LLA 126 (485)
Q Consensus 72 --------~-----------~~~~~~~~~~~~~~~~~--G~~~~~~~~~~~~~g~~~g~~~~---~~~g~R~sa~~-~l~ 126 (485)
+ +...+....|.++++++ |++ ++ .|.+.+...|+... +.+|+|++++. ||.
T Consensus 140 ~~~~~~~~hG~~Gp~~v~~~~~~~~~~~~~~~a~~~~~~G~~-~~---~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayL~ 215 (566)
T 3fim_B 140 SGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQSEEFF-FN---PDMGTGHPLGISWSIASVGNGQRSSSSTAYLR 215 (566)
T ss_dssp TTTSCGGGSCBSSSEEEBSCSSCCTHHHHHHHHHHHTHHHHC-BC---SCGGGSCCCEEEECCBSEETTEECCHHHHTHH
T ss_pred cccCCccccCCCCCeeeecCCCCCHHHHHHHHHHHHHhcCCC-cc---CCCCCCCcceEEeeeeecCCCEEcCHHHHHhh
Confidence 0 12356778899999999 985 22 23333443443221 24799999987 875
Q ss_pred h-cCCCCeEEEccceEEEEEeecC-CCCCeEEEEEEEeCCC-CeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHH
Q 011442 127 S-ANPQKITVLIRATVQKIVFDTS-GKRPKAVGVIFKDENG-NQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAE 203 (485)
Q Consensus 127 ~-~~~~nl~v~~~~~V~rI~~~~~-~~~~~a~GV~~~~~~g-~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~ 203 (485)
. ..++||+|+++++|+||+|+.+ ++.++|+||+|.+.+| +.++++| +||||||||+|+||||||+|||||+++
T Consensus 216 p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A----~kEVILsAGai~SPqlL~lSGIGp~~~ 291 (566)
T 3fim_B 216 PAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCA----KKEVVLSAGSVGTPILLQLSGIGDEND 291 (566)
T ss_dssp HHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEE----EEEEEECCHHHHHHHHHHHTTEECHHH
T ss_pred hhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEe----eeEEEEecCCcCChHHHHhcCCCChHH
Confidence 4 4789999999999999999821 1114899999986556 7777874 699999999999999999999999999
Q ss_pred hhhcCCceeecCccccccCccCCCceeeecCCCcccch-h-HH-hhcchhhhhHHHhcCCCCCCCCCcccccccccccc-
Q 011442 204 LEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQS-L-IE-TVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEI- 279 (485)
Q Consensus 204 L~~~GI~~v~dlp~VG~nl~dH~~~~~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~- 279 (485)
|+++||++++|||+||+|||||+.+.+.+..+.+.... . .. .........|...+.|+...... ....++....
T Consensus 292 L~~~gI~vv~dlPgVG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~--~~~~f~~~~~~ 369 (566)
T 3fim_B 292 LSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIA--NHLAWLRLPSN 369 (566)
T ss_dssp HHHTTCCCSEECTTTTCSBBCCEEECCEEEESCSCSSGGGGTCHHHHHHHHHHHHHHSCSGGGCCSC--SEEEEECCCTT
T ss_pred HhhcCCCceecCcchhhhhhcCccceEEEEeCCCcccchhhcChHHHHHHHHHHHhcCCCCcccChh--hheeeeccccc
Confidence 99999999999999999999999877666554432211 0 00 00112334676667774322110 0011111000
Q ss_pred ----ccccCCCCCCCChHHHHHHhhhccC---C-CccccccceeeecccccCceeEEEecCCCCCCCCeeecCCCCCHhH
Q 011442 280 ----GQLSTIPPKQRTPEAIQDYIRNKRT---L-PHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLD 351 (485)
Q Consensus 280 ----~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P~i~~~y~~~~~D 351 (485)
............+++ +.++..... . ....-...++...+++|+|||+|+|+|+||++.|+|+++|+++|.|
T Consensus 370 ~~~~~~~~~~~~~~~~pd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D 448 (566)
T 3fim_B 370 SSIFQTFPDPAAGPNSAHW-ETIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFD 448 (566)
T ss_dssp CGGGGTSCCCSSSTTSCSE-EEEEESSCCCTTSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSHHH
T ss_pred hhhhhhhccccccCCCCCE-EEEecccchhhcccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCccH
Confidence 000000000111111 001100000 0 0000011235567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccC---
Q 011442 352 LKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG--- 428 (485)
Q Consensus 352 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG--- 428 (485)
++.++++++.+++++++++++.+.. .+ ..|+. ....+|++|++|+|+...+.||++||||||
T Consensus 449 ~~~~~~~~~~~~~i~~~~~~~~~~~------~~------~~P~~---~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~ 513 (566)
T 3fim_B 449 IFTMIQAVKSNLRFLSGQAWADFVI------RP------FDPRL---RDPTDDAAIESYIRDNANTIFHPVGTASMSPRG 513 (566)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTEE------EE------SSGGG---SCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTT
T ss_pred HHHHHHHHHHHHHHHhCcccCCccc------cc------cCCCc---ccccchHHHHHHHhhcccccccccCccccCCcc
Confidence 9999999999999999998887752 11 01220 235689999999999999999999999998
Q ss_pred ---cccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011442 429 ---KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478 (485)
Q Consensus 429 ---~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~ 478 (485)
+|||++|||||++|||||||||||+++++||++|+||||||+||.|++++
T Consensus 514 ~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~~ 566 (566)
T 3fim_B 514 ASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKADQ 566 (566)
T ss_dssp CSSCSBCTTCBBTTCBSEEECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHTC
T ss_pred cCCccCCCCCeEccCCCcEEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhcC
Confidence 79999999999999999999999999999999999999999999998764
No 2
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=100.00 E-value=1.8e-81 Score=662.79 Aligned_cols=433 Identities=22% Similarity=0.275 Sum_probs=316.2
Q ss_pred CCCCCCcccccccCCceeecCcccccchhhhcccccccCChhhhh------cC-CCChhhhccccccchhccc-------
Q 011442 5 DTSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIE------RM-GWDAKLVNESFPWVERQIV------- 70 (485)
Q Consensus 5 ~~~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~------~~-gW~~~~l~~~~~~~e~~~~------- 70 (485)
+..+.|+||. ++++.+.|+|||+|||||+||+|+|.|+++.+|+ +. ||+|++++|||+|.|+...
T Consensus 77 ~w~~~t~~q~-~~~r~~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~ 155 (583)
T 3qvp_A 77 DHAYETVELA-TNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIA 155 (583)
T ss_dssp BCCEECCCCT-TTSCCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHH
T ss_pred cCCccccccC-CCCCeeeccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhc
Confidence 3455788996 6889999999999999999999999999996543 23 9999999999999998631
Q ss_pred --------c----------CC----CchhhHHHHHHHHHhCCCCCCCCCccCCCCceeeeeeE----EcCCCccccHHH-
Q 011442 71 --------H----------QP----KQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTI----FDRFGRRHTAAE- 123 (485)
Q Consensus 71 --------~----------~~----~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~----~~~~g~R~sa~~- 123 (485)
+ .+ ...++.+.|.++++++|++.. .|.+.+...|+.. .+++|.|+|++.
T Consensus 156 ~~~~~~~~~hG~~Gpl~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~----~D~n~~~~~G~~~~~~t~~~~g~R~saa~a 231 (583)
T 3qvp_A 156 AGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTK----KDFGCGDPHGVSMFPNTLHEDQVRSDAARE 231 (583)
T ss_dssp HTCCCCGGGSCSSSSEEEBCCCCSSCBCTHHHHHHHHHHTTTCCBC----CCTTSSCCCEEECCCBSBCTTCBBCCHHHH
T ss_pred ccccCCccccCCCCCEEecCCCCcccCCHHHHHHHHHHHHcCCCcC----CCCCCCCCceecccceeEcCCCcEecHHHH
Confidence 0 01 235677899999999998632 2333344444322 234689999987
Q ss_pred hhh-hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChH
Q 011442 124 LLA-SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKA 202 (485)
Q Consensus 124 ~l~-~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~ 202 (485)
||. ..+++||+|+++++|+||+|+++++.++|+||++.+.+|+.++++| +||||||||+|+||||||+|||||++
T Consensus 232 yL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A----~kEVILsAGa~~SPqLL~lSGIGp~~ 307 (583)
T 3qvp_A 232 WLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYA----KHEVLLAAGSAVSPTILEYSGIGMKS 307 (583)
T ss_dssp HTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEE----EEEEEECSCTTTHHHHHHHTTBSCHH
T ss_pred HHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEE----CCEEEEeCCccCCHHHHHHcCCCCHH
Confidence 885 4578999999999999999985322369999999865788888885 69999999999999999999999999
Q ss_pred HhhhcCCceeecCccccccCccCCCceeeecCCCccc--------chhHHhhcc--hhhhhHHHhcCC-CCCCCCCcccc
Q 011442 203 ELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVE--------QSLIETVGI--TKLGVYIEASSG-FGESRDSIHCH 271 (485)
Q Consensus 203 ~L~~~GI~~v~dlp~VG~nl~dH~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~~~~~~g-~~~~~~~~~~~ 271 (485)
+|+++||++++||| ||+|||||+.+.+.+..+.+.. ..+....+. .....|+....+ +...
T Consensus 308 ~L~~~GI~vv~dLP-VG~NLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 379 (583)
T 3qvp_A 308 ILEPLGIDTVVDLP-VGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEE------- 379 (583)
T ss_dssp HHGGGTCCCSBCCC-TTCCBBCCEEEEEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHHCHHHHHHH-------
T ss_pred HHHhCCCCceeeCc-cccchhhCccceEEEEecCCccccccccccccHHHhhccchHHHHHHHHhhcchhhcc-------
Confidence 99999999999999 9999999998877766543210 000000000 000011111000 0000
Q ss_pred ccccccccccccCCCCCCCChHHHHHHhhh------ccCCCcc--c--cc-cceeeecccccCceeEEEecCCCCCCCCe
Q 011442 272 HGIMSAEIGQLSTIPPKQRTPEAIQDYIRN------KRTLPHE--A--FK-GGFILEKIASPISTGELSLINTNVDDNPS 340 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~--~~-~~~~~~~~~~P~srG~V~l~s~d~~~~P~ 340 (485)
. ...+.+. ...+. +..+.. ....+.. . .. ...+....++|+|||+|+|+|+||++.|+
T Consensus 380 --~--~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~SrG~v~l~s~dp~~~P~ 448 (583)
T 3qvp_A 380 --A--VARGGFH------NTTAL-LIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHF 448 (583)
T ss_dssp --H--HHTTSCS------CHHHH-HHHHHHHHHHHHHSCCEEEEEEEECTTSEEEEEEESSCCCCBEEEESSSCGGGCCE
T ss_pred --c--ccccCcc------ccHHH-HhhhccchhhhccCCCCcceeeeccCCCceeeeeecccCCceEEEecCCCCCCCcc
Confidence 0 0000000 00000 000000 0000000 0 00 11223345899999999999999999999
Q ss_pred e-ecCCCCCHhHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhccccc
Q 011442 341 V-SFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIW 419 (485)
Q Consensus 341 i-~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~ 419 (485)
| +++|+++|.|++.++++++++++|+++++++.+.. .+ ..|+... ....+|++|++|+|+...+.|
T Consensus 449 i~~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~------~~------~~pg~~~-~~~~sd~~~~~~~r~~~~t~~ 515 (583)
T 3qvp_A 449 AYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFA------GE------TIPGDNL-AYDADLSAWTEYIPYHFRPNY 515 (583)
T ss_dssp EEECCTTCSHHHHHHHHHHHHHHHHHHTSTTHHHHEE------EE------EESGGGS-CTTCCHHHHHHHGGGSCEECS
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHhCcchhhccc------cc------cCCCccc-ccCCCHHHHHHHHHhccCCCc
Confidence 9 99999999999999999999999999988877652 00 1233111 123689999999999999999
Q ss_pred ccccccccC-----cccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011442 420 HYHGGCHVG-----KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478 (485)
Q Consensus 420 H~~GTc~MG-----~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~ 478 (485)
|++|||||| +|||++|||||++|||||||||||+++++||++|+||||||+||+|+++.
T Consensus 516 H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~ 579 (583)
T 3qvp_A 516 HGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDY 579 (583)
T ss_dssp CCBCTTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceeCCCCCCCceECCCCeEecCCCeEEeecccCCCCCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 999999998 79999999999999999999999999999999999999999999988764
No 3
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=100.00 E-value=8.7e-78 Score=634.11 Aligned_cols=433 Identities=40% Similarity=0.741 Sum_probs=336.0
Q ss_pred CCCcccccccCCceeecCcccccchhhhcccccccCChhhhhcCC--CChhhhccccccchhccccCCCchhhHHHHHHH
Q 011442 8 PQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIERMG--WDAKLVNESFPWVERQIVHQPKQEGWQKALRDS 85 (485)
Q Consensus 8 ~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~~~g--W~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~ 85 (485)
..|.||.+++++++.++|||+|||||+||+|+|+|+++++|+..| |+|++++|||+++|+.+.+.|...++...|.++
T Consensus 82 ~~t~~q~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~G~~W~~~~~~p~~~~~e~~~~~~~~~~~~~~~~~~a 161 (536)
T 1ju2_A 82 GKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTA 161 (536)
T ss_dssp SSSSEEEEECTTSCEEEEECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBCCCCCHHHHHHHHH
T ss_pred CcCCCccccCCCcceeecceeccccccccCeEEEeCCHHHHhhccCCCChHHHHHHHHhhhcccCCCCCCCcHHHHHHHH
Confidence 367899999999999999999999999999999999998887778 999999999999999887777777889999999
Q ss_pred HHhCCCCCCCCCccCCCCceeeeeeEEcCCCccccHHHhhhhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCC
Q 011442 86 LLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAELLASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENG 165 (485)
Q Consensus 86 ~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~R~sa~~~l~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g 165 (485)
++++|+.+.++...+...|+..|.+.++.+|.|+++..|++.+.++|++|+++++|+||+++++ +..+++||++.+.+|
T Consensus 162 ~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~r~s~~~~~~~~~~~~~~v~~~~~v~~i~~~~~-~~~~~~GV~~~~~~g 240 (536)
T 1ju2_A 162 FLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNA-PGLTATGVIYRDSNG 240 (536)
T ss_dssp HHHTTCCCEEEECCBCCSEEEECEESBCTTSBBCCGGGGGGGSCTTTEEEEESCEEEEEEECCS-SSCBEEEEEEECTTS
T ss_pred HHHcCCCCCCCcccCCCCCceeeeEEECCCCeEecHHHhhhhhcCCCcEEEeCCEEEEEEECCC-CCCEEEEEEEEeCCC
Confidence 9999987665544445556555544445789999988777777889999999999999999863 124899999986567
Q ss_pred CeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCccccccCccCCCceeeecCCCcccchhHHh
Q 011442 166 NQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIET 245 (485)
Q Consensus 166 ~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp~VG~nl~dH~~~~~~~~~~~~~~~~~~~~ 245 (485)
+.++++++ ++|+||||||+|+||+|||+|||||+++|+++||++++|||+||+|||||+...+.+..+.+........
T Consensus 241 ~~~~~~v~--a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~~~~~~~~~~~~~~~~~~ 318 (536)
T 1ju2_A 241 TPHQAFVR--SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTV 318 (536)
T ss_dssp CEEEEEEE--EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEEEEEECCSSCCCCCCCCE
T ss_pred ceEEEEec--cCCEEEEcCcccCCHHHHHHcCCCCHHHHHhcCCceEecCcccccchhcCcceeEEEEeCCCcccccchh
Confidence 76666411 3599999999999999999999999999999999999999999999999998777666554321111000
Q ss_pred hcchhhhhHHHhcCCCCCCCCCccccccccccccccccCCCCCCCChHHHHHHhhhccCCCccccccceeeecccccCce
Q 011442 246 VGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRTLPHEAFKGGFILEKIASPIST 325 (485)
Q Consensus 246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~sr 325 (485)
.... ..|.....|+.... . ..+..++... ..++... ..++...+.+|+||
T Consensus 319 ~~~~--~~~~~~~~g~~~~~---~----------~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~P~Sr 368 (536)
T 1ju2_A 319 LGIS--NDFYQCSFSSLPFT---T----------PPFGFFPSSS-------------YPLPNST--FAHFASKVAGPLSY 368 (536)
T ss_dssp EEEC--SSEEEEEEEECCCS---S----------CCBTTBSSSC-------------CCCCSSC--EEEEEEEESSCSCC
T ss_pred hhHH--HHHHHcCCCCCCCC---h----------hhheeecCcc-------------cCCCCcc--eEEEeeecCCCCcc
Confidence 0000 01211112211000 0 0000011000 0011111 12345567899999
Q ss_pred eEEEe-cCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCccccccccccchhHHHHHhhhhccccC-----CCCC
Q 011442 326 GELSL-INTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVN-----LVPK 399 (485)
Q Consensus 326 G~V~l-~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~p~ 399 (485)
|+|+| +|+||++.|+|+++|+.+|.|++.++++++.+++++++.+++.+.. .+. ...|+. ..|.
T Consensus 369 G~V~L~~s~Dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~------~~~----~~~p~~~~~~~~~p~ 438 (536)
T 1ju2_A 369 GSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKV------EDL----PGVEGFNILGIPLPK 438 (536)
T ss_dssp EEEECSCSSCTTSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCS------SCC----STTCSCCBSSSCCCS
T ss_pred eEEEeCCCCCcccCceecccccCCccHHHHHHHHHHHHHHHHcCccchhhhc------ccc----ccCCCccccccCCCc
Confidence 99999 8999999999999999999999999999999999999988887652 000 000110 0233
Q ss_pred CCCCHHHHHHHHHhhcccccccccccccCcccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011442 400 HTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRL 479 (485)
Q Consensus 400 ~~~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~ 479 (485)
...+|++|++|+|+...+.+|++||||||+|||++|||||++|||||||||||+++++||++|+||||||+|+.|++++|
T Consensus 439 ~~~~d~~~~~~ir~~~~t~~H~~GTcrMG~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~t~~aiAer~A~~ii~~~~ 518 (536)
T 1ju2_A 439 DQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERS 518 (536)
T ss_dssp CTTCHHHHHHHHHHHCEECSCCEESSCBTTTBCTTSBBTTCBTEEECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhccCccccCcCccCCccEECCCCeEcCCCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcc
Q 011442 480 GKAA 483 (485)
Q Consensus 480 ~~~~ 483 (485)
+++.
T Consensus 519 ~~~~ 522 (536)
T 1ju2_A 519 ASDL 522 (536)
T ss_dssp HHC-
T ss_pred hhcc
Confidence 8653
No 4
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=100.00 E-value=2.7e-77 Score=631.54 Aligned_cols=430 Identities=21% Similarity=0.289 Sum_probs=313.8
Q ss_pred ccCCcee------ecCcccccchhhhcccccccCChhhhh------cCCCChhhhccccccchhccccC-----------
Q 011442 16 ISTDGVL------NARARVLGGGSSINAGFYTRASSQFIE------RMGWDAKLVNESFPWVERQIVHQ----------- 72 (485)
Q Consensus 16 ~~~~~~~------~~rG~~lGGsS~iN~~~~~r~~~~~~~------~~gW~~~~l~~~~~~~e~~~~~~----------- 72 (485)
++++.+. |+|||+|||||+||+|+|.|+++++|+ +.+|+|++++|||+|.|+.....
T Consensus 71 ~~~r~~~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG 150 (577)
T 3q9t_A 71 MVRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIG 150 (577)
T ss_dssp EEEETTEEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGC
T ss_pred ECCccccccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCC
Confidence 3455555 999999999999999999999986543 46899999999999998754211
Q ss_pred ---------C----CchhhHHHHHHHHHhCCCCCCCCCccCCCCceeeeeeE---EcCCCccccHHHhhhhcCCCCeEEE
Q 011442 73 ---------P----KQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTI---FDRFGRRHTAAELLASANPQKITVL 136 (485)
Q Consensus 73 ---------~----~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~---~~~~g~R~sa~~~l~~~~~~nl~v~ 136 (485)
+ ...++...+.++++++|++ ++ .|.+.+...|... ...+|.|+++..|+ ..++||+|+
T Consensus 151 ~~Gpl~v~~~~~~~~~~~~~~~~~~a~~~~G~~-~~---~d~n~~~~~G~~~~~~~~~~g~R~s~~~~l--~~r~Nl~v~ 224 (577)
T 3q9t_A 151 GGGPIPISHAELIDEMAPFRENLTKAWKSMGQP-LI---ENIYDGEMDGLTHCCDTIYRGQRSGSFLFV--KNKPNITIV 224 (577)
T ss_dssp CSCSEEEEECCCCGGGHHHHHHHHHHHHHTTCC-BC---SCCSSSCCCEEEECEESEETTEECCGGGGS--SSCTTEEEE
T ss_pred CCCCEEeeCCCCCcccchHHHHHHHHHHHcCCC-cC---CCCCCCCcCeEEeecceecCCeEeeHHHHH--hcCCCeEEE
Confidence 0 1134677888999999985 22 2333343333322 12468999876553 468999999
Q ss_pred ccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCc
Q 011442 137 IRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNA 216 (485)
Q Consensus 137 ~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp 216 (485)
++++|+||+|++.+ ++|+||++.+.+|+.++++| +||||||||+|+||+|||+|||||+++|+++||++++|||
T Consensus 225 ~~a~v~ri~~~~~~--~~a~GV~~~~~~g~~~~v~A----~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP 298 (577)
T 3q9t_A 225 PEVHSKRLIINEAD--RTCKGVTVVTAAGNELNFFA----DREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSR 298 (577)
T ss_dssp CSEEEEEEEEETTT--TEEEEEEEEETTSCEEEEEE----EEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECT
T ss_pred cCcEEEEEEEeCCC--CEEEEEEEEeCCCcEEEEEe----eeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCeeccCc
Confidence 99999999998532 59999999875588888874 6999999999999999999999999999999999999999
Q ss_pred cccccCccCCCceeeecCCCcccchh--H--HhhcchhhhhHHHhcCCCCCCCCCcccccccccccc-------------
Q 011442 217 HIGKGMADNPMNAVFVPSNRPVEQSL--I--ETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEI------------- 279 (485)
Q Consensus 217 ~VG~nl~dH~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------- 279 (485)
+||+|||||+.+.+.+..+.+..... . ..........|...+.|+..... ....++.....
T Consensus 299 ~VG~nl~DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gpl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 376 (577)
T 3q9t_A 299 HVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGL--LELVGFPRIDKYLEKDAEYRKAKA 376 (577)
T ss_dssp TTTEEEBCCEEEEEEEEECTTSSSHHHHTSCSHHHHHHHHHHHHHSCSGGGCCS--EEEEEECCCHHHHTTCHHHHHHHH
T ss_pred hhhhhhhcCcceeEEEEeCCCCccchhhhcchhHHHHHHHHHHhcCCCCcccch--hheeEEeecChhhhcchhhhhhhh
Confidence 99999999998877776654321110 0 00011233456666666432210 00000000000
Q ss_pred --ccccC-CCCCCCChHHHHHHh-----hhcc-CCCc-cccccceeeecccccCcee-EEEecCCCCCCCCeeecCCCCC
Q 011442 280 --GQLST-IPPKQRTPEAIQDYI-----RNKR-TLPH-EAFKGGFILEKIASPISTG-ELSLINTNVDDNPSVSFNYFSH 348 (485)
Q Consensus 280 --~~~~~-~~~~~~~~~~~~~~~-----~~~~-~~~~-~~~~~~~~~~~~~~P~srG-~V~l~s~d~~~~P~i~~~y~~~ 348 (485)
..... .+... +++ +..+ .... ..+. ..-...++...+++|+||| +|+|+|+||++.|+|+++|+++
T Consensus 377 ~~~~~~~~~~~~~--p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrGG~V~L~S~dp~~~P~i~p~yl~~ 453 (577)
T 3q9t_A 377 ANGGKDPFSPLGQ--PHF-ELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFAN 453 (577)
T ss_dssp HTTTSCSSCTTSC--CSE-EEEEESSCCGGGCSSSCCCSSSEEEEEEEEESSCCSCCEEEECSCSCTTSCCEEECCTTCS
T ss_pred ccccccccCCCCC--ceE-EEEecccccccccccccCCCCCCEEEEEEEeeeccccCCEEEeCCCCCCCCceEecCcCCC
Confidence 00000 00000 000 0000 0000 0000 0001123556788999999 9999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHH-cCccccccccccchhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhccccccccccccc
Q 011442 349 PLDLKRCVDGVRMAAKIV-QSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHV 427 (485)
Q Consensus 349 ~~D~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~M 427 (485)
|.|++.++++++.+++++ ++++++.+.. .+ ..|+ ....+|++|++|+|+...+.+|++|||||
T Consensus 454 ~~D~~~~~~~~~~~~~i~~~~~~~~~~~~------~e------~~p~----~~~~sd~~~~~~ir~~~~t~~H~~GTc~M 517 (577)
T 3q9t_A 454 DLDIIAMREGIRFSYDLLFKGEGFKDLVE------SE------YPWE----MPLDSDKEMHRAVLDRCQTAFHPTGTARL 517 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGTEE------EE------ESSC----CCTTCHHHHHHHHHHHCEECSCCBCTTCB
T ss_pred ccHHHHHHHHHHHHHHHHHhChhhhhccc------cc------cCCC----CCcCCHHHHHHHHHhccccccccccceec
Confidence 999999999999999999 8888887752 11 0122 23578999999999999999999999999
Q ss_pred C-----cccCCCCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011442 428 G-----KVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478 (485)
Q Consensus 428 G-----~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~ 478 (485)
| +|||++|||||++|||||||||||+++++||++|+||||||+||.|+++.
T Consensus 518 g~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~a~~~~iaekaAd~I~~~~ 573 (577)
T 3q9t_A 518 SKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEH 573 (577)
T ss_dssp CSSTTTCSBCTTCBBTTCBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCceECCCCeEeCCCCcEEeecccccCCCCCccHHHHHHHHHHHHHHHHhhh
Confidence 9 69999999999999999999999999999999999999999999988764
No 5
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=100.00 E-value=4.7e-76 Score=626.50 Aligned_cols=445 Identities=19% Similarity=0.207 Sum_probs=315.7
Q ss_pred CCcccccccCCceeecCcccccchhhhcccccccCChhhhh-------cCCCChhhhccccccchhcccc----------
Q 011442 9 QSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIVH---------- 71 (485)
Q Consensus 9 ~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~-------~~gW~~~~l~~~~~~~e~~~~~---------- 71 (485)
.|+| .++++.+.++|||+|||||+||+|+|+|+++.+|+ +.+|+|++|+|||+|+|+.+..
T Consensus 86 ~t~p--~~~~~~~~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~ 163 (587)
T 1gpe_A 86 LTVP--LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHS 163 (587)
T ss_dssp ECCC--CTTSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCC
T ss_pred cccc--CCCCceeeeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccc
Confidence 3455 57888999999999999999999999999996542 4689999999999999987542
Q ss_pred -C------------------CCchhhHHHHHHHHHhCCCCCCCCCccCCCCceeeeeeEEcCCCccccHHH-hhh-hcCC
Q 011442 72 -Q------------------PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLA-SANP 130 (485)
Q Consensus 72 -~------------------~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~R~sa~~-~l~-~~~~ 130 (485)
. ....+..+.|.++++++|++....++.....|+..+....|++|+|+|+.. ||. .+.+
T Consensus 164 ~~~~~~g~~Gpl~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~~~~~g~R~sa~~~~l~~~~~~ 243 (587)
T 1gpe_A 164 FNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQR 243 (587)
T ss_dssp CCGGGCCBSSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTC
T ss_pred cCccccCCCCCEEEccCCCcCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCCEEEecceEECCCCcccCHHHHHHHHhhcC
Confidence 0 023567789999999999964322111111233221122345789999986 884 4578
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCc
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNIS 210 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~ 210 (485)
+|++|+++++|+||+++++++..+|+||++.+.+|+.++++| +|+||||||+|+||+|||+|||||+++|+++||+
T Consensus 244 ~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A----~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~ 319 (587)
T 1gpe_A 244 SNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFA----KHEVLLAAGSAISPLILEYSGIGLKSVLDQANVT 319 (587)
T ss_dssp TTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEE----EEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCC
T ss_pred CCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEe----cccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCC
Confidence 999999999999999986322248999999855787777774 5999999999999999999999999999999999
Q ss_pred eeecCccccccCccCCCceeeecCCCcccchhHHhhc-chhhhhHHHhcCCCCCCCCCccccccccccccccccCCCCCC
Q 011442 211 VVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVG-ITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQ 289 (485)
Q Consensus 211 ~v~dlp~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (485)
+++||| ||+|||||+...+.+..+.+... ...... ......|.....|+.... ......+......... ....
T Consensus 320 vv~dlP-VG~nL~DH~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~~~~---~~~~~~~~~~~~~~~~-~~~~ 393 (587)
T 1gpe_A 320 QLLDLP-VGINMQDQTTTTVSSRASSAGAG-QGQAVFFANFTETFGDYAPQARDLL---NTKLDQWAEETVARGG-FHNV 393 (587)
T ss_dssp CSEECC-TTCSBBCCEEEEEEEEECGGGCS-BCEEEEEEEHHHHHGGGHHHHHHHH---HHSHHHHHHHHHHTTS-CSCH
T ss_pred eEEeCC-CCcchhcCcccceEEEeCCCccc-ccchHHHHHHHHHHHhCCCCCcccc---ccceeeEeeccccccc-cccc
Confidence 999999 99999999988776655432110 000000 001112222222211000 0000000000000000 0000
Q ss_pred C--ChHHHHHHhhhc--cCCCcc-----ccccceeeecccccCceeEEEecCCCCCCCC-eeecCCCCCHhHHHHHHHHH
Q 011442 290 R--TPEAIQDYIRNK--RTLPHE-----AFKGGFILEKIASPISTGELSLINTNVDDNP-SVSFNYFSHPLDLKRCVDGV 359 (485)
Q Consensus 290 ~--~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P-~i~~~y~~~~~D~~~~~~~~ 359 (485)
. .+++ +..+... ...+.. ......+...+++|.|||+|+|+|+||++.| +|+++|+.++.|++.+++++
T Consensus 394 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~~i~~~y~~~~~D~~~~~~~~ 472 (587)
T 1gpe_A 394 TALKVQY-ENYRNWLLDEDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAAS 472 (587)
T ss_dssp HHHHHHH-HHHHHHHHHSCCEEEEEEEECTTEEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccH-HHHhhhccCCCCcceeeeecCCCcEEEEEEecCCccceeEEeCCCCcccCccEeecccCCChHHHHHHHHHH
Confidence 0 0111 1111110 001100 0011234567889999999999999999999 99999999999999999999
Q ss_pred HHHHHHHcCccccccccccchhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccC-----cccCCC
Q 011442 360 RMAAKIVQSKHFLNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG-----KVVSTE 434 (485)
Q Consensus 360 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~ 434 (485)
+.+++++++.+++.+.. .+ ..|+...+ ...+|++|++|++....+.+|++|||||| +|||++
T Consensus 473 ~~~~~i~~~~~~~~~~~------~~------~~pg~~~~-~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~~~sVVD~~ 539 (587)
T 1gpe_A 473 KLARDLTSQGAMKEYFA------GE------TLPGYNLV-QNATLSQWSDYVLQNFRPNWHAVSSCSMMSRELGGVVDAT 539 (587)
T ss_dssp HHHHHHHTSTTHHHHEE------EE------EESGGGSC-TTCCHHHHHHHHHHSCEECSCCBCTTCBSCGGGTCSBCTT
T ss_pred HHHHHHHcCcchhhhcc------cc------cCCCcccc-CCCCHHHHHHHHHHhcCcccCccCccccCCCCCCceECCC
Confidence 99999999988877651 00 11321111 12689999999999999999999999999 599999
Q ss_pred CeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 011442 435 YKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRL 479 (485)
Q Consensus 435 ~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~ 479 (485)
|||||++|||||||||||+++++||++|+||||||+||+|+++..
T Consensus 540 lrV~Gv~nLrVvDaSv~P~~~~~Np~~ti~aiAeraAd~I~~~~~ 584 (587)
T 1gpe_A 540 AKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYA 584 (587)
T ss_dssp CBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCCcEEeeeccCCCCCCcchHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999987753
No 6
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=100.00 E-value=9.2e-73 Score=597.25 Aligned_cols=417 Identities=20% Similarity=0.319 Sum_probs=308.0
Q ss_pred CCCCCcccccccCCceeecCcccccchhhhcccccccCChhhhh-------cCCCChhhhccccccchhccccC------
Q 011442 6 TSPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIVHQ------ 72 (485)
Q Consensus 6 ~~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~-------~~gW~~~~l~~~~~~~e~~~~~~------ 72 (485)
....|+||+.++++.+.|+|||+|||||+||+|+|+|+++.+|+ +++|+|++++|||+++|+.....
T Consensus 74 w~~~t~p~~~~~~~~~~~~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~~~~~~~ 153 (526)
T 3t37_A 74 WDYRTEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGIHGK 153 (526)
T ss_dssp CCEECCCBGGGTTBCCEECCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTTSSSSCS
T ss_pred cCccccccCCCCCCeEeccCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCCccccCc
Confidence 34678999999999999999999999999999999999996542 47899999999999999764211
Q ss_pred ----------CCchhhHHHHHHHHHhCCCCCCCCCccCCCCceeeeeeEEcCCCccccHHH-hhh-h-cCCCCeEEEccc
Q 011442 73 ----------PKQEGWQKALRDSLLDVGVSPFNGFTYDHIYGTKIGGTIFDRFGRRHTAAE-LLA-S-ANPQKITVLIRA 139 (485)
Q Consensus 73 ----------~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~R~sa~~-~l~-~-~~~~nl~v~~~~ 139 (485)
....|+.+.|.++++++|++.....+.....++.. +...+..|.|.++.. |+. . ..++||+|++++
T Consensus 154 ~g~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~ 232 (526)
T 3t37_A 154 GGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIGVTP-NSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGS 232 (526)
T ss_dssp SCSEECBCCSTTSCHHHHHHHHHHHHTTCCBCSSSCSSCCBSBCC-CCBCEETTEECCHHHHHSCHHHHTCTTEEEECSC
T ss_pred CCCcCcccccccCCHHHHHHHHHHHHcCCCcccCCCCCccccccc-ccccccCCcccccccccccccccCCCCeEEEeCC
Confidence 12357788899999999986432211111112211 122235688888876 553 3 368999999999
Q ss_pred eEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCcccc
Q 011442 140 TVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIG 219 (485)
Q Consensus 140 ~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp~VG 219 (485)
+|+||+++++ +|+||++.. .+...++.+ ||||||||||+||+|||+|||||+++|+++||++++|||+||
T Consensus 233 ~v~~i~~~~~----~a~gv~~~~-~~~~~~~~a-----~~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG 302 (526)
T 3t37_A 233 RVRRLKLEGN----QVRSLEVVG-RQGSAEVFA-----DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIG 302 (526)
T ss_dssp EEEEEEEETT----EEEEEEEEE-TTEEEEEEE-----EEEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTT
T ss_pred EEEEEEecCC----eEEEEEEEe-cCceEEEee-----cceEEcccccCCcchhhhccCCchhhhhccCCCeEecCCccc
Confidence 9999999874 999999986 455556654 999999999999999999999999999999999999999999
Q ss_pred ccCccCCCceee-ecCCCcccchhHHhhcchhhhhHHHhcCCCCCCCCCccccccccccccccccCCCCCCCChHHHHHH
Q 011442 220 KGMADNPMNAVF-VPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDY 298 (485)
Q Consensus 220 ~nl~dH~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (485)
+|||||+..... +....+....... .... ..+.. ...+.... ...+.... .. .+... +
T Consensus 303 ~nl~DH~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~~~~~---~~~~~~~~---~~---~~~~~---~----- 361 (526)
T 3t37_A 303 RNLQDHLLGAGNLYAARKPVPPSRLQ--HSES-MAYMR-ADSFTAAG---QPEIVVGC---GV---APIVS---E----- 361 (526)
T ss_dssp CSBBCCEEEEEEEEEESSCCCCCSSC--SEEE-EEEEC-SSCSSCCS---SCCEEEEE---ES---SCCCC---T-----
T ss_pred cccccccccceeEEeccCCcchHhhc--chhh-hhhhh-cccccccC---Ccceeeec---cc---ccccc---c-----
Confidence 999999865433 2222221110000 0000 00000 00010000 00000000 00 00000 0
Q ss_pred hhhccCCCccccccceeeecccccCceeEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCcccccccccc
Q 011442 299 IRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQCD 378 (485)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (485)
.... + .......+...+.+|.|||+|+++++||.+.|+|+++|+.++.|++.++++++.+++++++.+++.+..
T Consensus 362 --~~~~-~-~~~~~~~~~~~l~~p~srG~v~~~s~dp~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~-- 435 (526)
T 3t37_A 362 --SFPA-P-AAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRE-- 435 (526)
T ss_dssp --TSCC-C-CTTSEEEEEEEESSCCCCBEEECSSSSTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTCGGGTTTEE--
T ss_pred --cccc-c-cCCcceeeeccccCccccCcceeccCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccc--
Confidence 0000 0 001112345668899999999999999999999999999999999999999999999999988877652
Q ss_pred chhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccC----cccCCCCeeeccCCceEeecccCCCC
Q 011442 379 QKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG----KVVSTEYKVLGIDRLRVVDGSTYDES 454 (485)
Q Consensus 379 ~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG----~VVD~~~rV~G~~nL~VvDaSv~P~~ 454 (485)
.+..|....+++++++|+++...+.||++|||||| ||||++|||||++|||||||||||++
T Consensus 436 ---------------~~~~pg~~~~~~~~~~~ir~~~~t~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nL~VvDaSv~P~~ 500 (526)
T 3t37_A 436 ---------------RELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDASIMPNL 500 (526)
T ss_dssp ---------------EECSSCCCCSHHHHHHHHHHHEEECSCCBCTTCBCSSTTCSBCTTCBBTTCSSEEECSGGGCSSC
T ss_pred ---------------cccCCCCCCCHHHHHHHHHhcCccCcccCccccCCCCCCccCCCCCEEcCCCCeEEEEcCcccCC
Confidence 11234445688999999999999999999999999 79999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHH
Q 011442 455 PGTNPQGTVLMMGRYMGVKIL 475 (485)
Q Consensus 455 ~~~np~~ti~alA~r~A~~i~ 475 (485)
+++||++||||||||+||+.-
T Consensus 501 ~~~np~~ti~aiAEkaAd~~~ 521 (526)
T 3t37_A 501 TAGPIHAAVLAIAETFARQYH 521 (526)
T ss_dssp CSSCCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999864
No 7
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=100.00 E-value=2.6e-72 Score=593.69 Aligned_cols=420 Identities=25% Similarity=0.358 Sum_probs=311.5
Q ss_pred CCCCcccccccCCceeecCcccccchhhhcccccccCChhhhh-------cCCCChhhhccccccchhccc------cC-
Q 011442 7 SPQSASQYFISTDGVLNARARVLGGGSSINAGFYTRASSQFIE-------RMGWDAKLVNESFPWVERQIV------HQ- 72 (485)
Q Consensus 7 ~~~t~~q~~~~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~-------~~gW~~~~l~~~~~~~e~~~~------~~- 72 (485)
.+.++||+. +++.+.++|||+|||||+||+|+|+|+.+.+|+ +.+|+|++|+|||+++|+... ++
T Consensus 72 ~~~~~p~~~-~~~~~~~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~~~~~g 150 (546)
T 2jbv_A 72 DYPIEPQEN-GNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHG 150 (546)
T ss_dssp CEEBCCCSS-SCTTCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTTBTTSC
T ss_pred cccccccCC-CCceEEeecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCCccccCC
Confidence 455788888 889999999999999999999999999985432 358999999999999998654 11
Q ss_pred ----------CCchhhHHHHHHHHHhCCCCCCCCCccCC--CCceeeeeeEEcC-CCccccHHH-hhhhc-CCCCeEEEc
Q 011442 73 ----------PKQEGWQKALRDSLLDVGVSPFNGFTYDH--IYGTKIGGTIFDR-FGRRHTAAE-LLASA-NPQKITVLI 137 (485)
Q Consensus 73 ----------~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~g~~~g~~~~~~-~g~R~sa~~-~l~~~-~~~nl~v~~ 137 (485)
+...+..+.|.++++++|++.. .++... ..|+.. |...|. +|.|+++.. ||..+ +++|++|++
T Consensus 151 ~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~~~~-d~n~~~~~~~g~~~-~~~~~~~~g~R~s~~~a~l~~a~~~~~~~i~~ 228 (546)
T 2jbv_A 151 DSGPVHLMNVPPKDPTGVALLDACEQAGIPRA-KFNTGTTVVNGANF-FQINRRADGTRSSSSVSYIHPIVEQENFTLLT 228 (546)
T ss_dssp BSCSEEEEECCSCCHHHHHHHHHHHHTTCCBC-CSSSSSCCSSEEEE-CEECBCTTSBBCCHHHHHTGGGTTCTTEEEEC
T ss_pred CCCCEEEecCCCCCHHHHHHHHHHHHCCCCcc-CCCCCCcCcceEEe-eeeecCCCCeEcCHHHHHHHHHhcCCCcEEEe
Confidence 1235677889999999999643 221111 223322 223356 899999876 88765 578999999
Q ss_pred cceEEEEEeecCCCCCeEEEEEEEeCC-CCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCc
Q 011442 138 RATVQKIVFDTSGKRPKAVGVIFKDEN-GNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNA 216 (485)
Q Consensus 138 ~~~V~rI~~~~~~~~~~a~GV~~~~~~-g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp 216 (485)
+++|++|+++++ .+++||++.+.. |+.++++| +|+||||||+|+||+||++|||||+++|+++||++++|||
T Consensus 229 ~~~V~~i~~~~~---~~~~GV~~~~~~~g~~~~i~A----~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP 301 (546)
T 2jbv_A 229 GLRARQLVFDAD---RRCTGVDIVDSAFGHTHRLTA----RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSP 301 (546)
T ss_dssp SCEEEEEEECTT---SBEEEEEEESSTTSCEEEEEE----EEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECT
T ss_pred CCEEEEEEECCC---CeEEEEEEEECCCCcEEEEEe----CccEEEecCccCCchhhhhcCCCchHHHHhcCCceEeeCc
Confidence 999999999763 389999998521 77777775 4699999999999999999999999999999999999999
Q ss_pred cccccCccCCCceeeecCCCcccchhHHhhcchhhhhHHHhcCCCCCCCCC-ccccccccccccccccCCCCCCCChHHH
Q 011442 217 HIGKGMADNPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDS-IHCHHGIMSAEIGQLSTIPPKQRTPEAI 295 (485)
Q Consensus 217 ~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (485)
+||+|||||+...+.+..+.+..... ....... +|...... ....+.+... +... ....
T Consensus 302 ~VG~nL~dH~~~~~~~~~~~~~~~~~---~~~~~~~-------~f~~~~~~~~~p~~~~~~~--------~~~~-~~~~- 361 (546)
T 2jbv_A 302 GVGEHLQDHPEGVVQFEAKQPMVAES---TQWWEIG-------IFTPTEDGLDRPDLMMHYG--------SVPF-DMNT- 361 (546)
T ss_dssp TTTCSBBCCEECCEEEEESSCCCSCC---SSSCCEE-------EEECSSTTCSSCSEEEEEE--------SSCC-CTTT-
T ss_pred chhhhhhhCccceEEEEecCCCcccc---cchhheE-------EEEecCCCCCCCceEEEec--------cccc-cccc-
Confidence 99999999998777665543321100 0000000 01100000 0000100000 0000 0000
Q ss_pred HHHhhhccCCCccccccceeeecccccCceeEEEecCCCCCCCCeeecCCCCCHh--HHHHHHHHHHHHHHHHcCccccc
Q 011442 296 QDYIRNKRTLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPL--DLKRCVDGVRMAAKIVQSKHFLN 373 (485)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P~i~~~y~~~~~--D~~~~~~~~~~~~~i~~~~~~~~ 373 (485)
. ... .. .. .....+...+++|.|||+|+|+|+||++.|+|+++|+.++. |++.++++++.+++++++.+++.
T Consensus 362 ~-~~g-~~-~~---~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~I~~~y~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~ 435 (546)
T 2jbv_A 362 L-RHG-YP-TT---ENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAE 435 (546)
T ss_dssp G-GGT-CC-CC---SSEEEEEEEETTCCCCBEEECSSSCTTSCCEEECCTTCCTTCHHHHHHHHHHHHHHHHHTSGGGTT
T ss_pred c-ccC-cc-CC---CCeEEEEEEEcccCcccEEEecCCCCCCCceecccccCCCchhHHHHHHHHHHHHHHHHcCcchhh
Confidence 0 000 00 00 11123456688999999999999999999999999999999 99999999999999999988877
Q ss_pred cccccchhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccC------cccCCCCeeeccCCceEee
Q 011442 374 YTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVSTEYKVLGIDRLRVVD 447 (485)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG------~VVD~~~rV~G~~nL~VvD 447 (485)
+.. .+ ..|+ ....+|++|++|+++...+.+|++|||||| +|||++|||||++||||||
T Consensus 436 ~~~------~~------~~p~----~~~~sd~~~~~~ir~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~nLrVvD 499 (546)
T 2jbv_A 436 WTG------RE------LSPG----VEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVAD 499 (546)
T ss_dssp TEE------EE------EESC----TTCCSHHHHHHHHHHHCEECSCCBCTTCBCCTTCTTCSBCTTCBBTTSBSEEECS
T ss_pred ccc------cc------ccCC----CCCCCHHHHHHHHHhcCCcccccccccccCCCCCCCceECCCCEEECCCCeEEee
Confidence 651 00 0132 235689999999999999999999999999 7999999999999999999
Q ss_pred cccCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 011442 448 GSTYDESPGTNPQGTVLMMGRYMGVKILRQR 478 (485)
Q Consensus 448 aSv~P~~~~~np~~ti~alA~r~A~~i~~~~ 478 (485)
|||||+++++||++|+||||||+||+|+++.
T Consensus 500 aSv~P~~~~~np~~ti~aiAeraAd~I~~~~ 530 (546)
T 2jbv_A 500 ASVMPEHVTVNPNITVMMIGERCADLIRSAR 530 (546)
T ss_dssp GGGCSSCCSSCCHHHHHHHHHHHHHHC----
T ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998764
No 8
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=100.00 E-value=3.6e-62 Score=517.93 Aligned_cols=412 Identities=19% Similarity=0.228 Sum_probs=285.5
Q ss_pred ceeecCcccccchhhhcccccccCChhhhhc---C--CCChhhhccccccchhccccC--C------CchhhHHHHHHHH
Q 011442 20 GVLNARARVLGGGSSINAGFYTRASSQFIER---M--GWDAKLVNESFPWVERQIVHQ--P------KQEGWQKALRDSL 86 (485)
Q Consensus 20 ~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~~---~--gW~~~~l~~~~~~~e~~~~~~--~------~~~~~~~~~~~~~ 86 (485)
.+.+++||+|||||+||+|+|+|+.+.+|+. | +|+|++ |||+++|+..... + ...+....|.+++
T Consensus 84 ~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~~~w~~~~--p~~~k~e~~~~~~~~~~~~g~~~~~~~~~~~~~a~ 161 (546)
T 1kdg_A 84 DITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA--PYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLL 161 (546)
T ss_dssp TBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCH--HHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHH
T ss_pred ccccccceeecccccccceEEecCChHHhcCcccCccccCccc--HHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHH
Confidence 4678899999999999999999999876654 2 577777 9999998854210 1 2235567788999
Q ss_pred HhCCCCCCCCCccCC---CCceeeeeeEEcCCCccccHHH-hhhhc-CCCCeEEEccceEEEEEeecCCCCCeEEEEEEE
Q 011442 87 LDVGVSPFNGFTYDH---IYGTKIGGTIFDRFGRRHTAAE-LLASA-NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFK 161 (485)
Q Consensus 87 ~~~G~~~~~~~~~~~---~~g~~~g~~~~~~~g~R~sa~~-~l~~~-~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~ 161 (485)
+++|++... ...+. ..|+.. +.+.+.+|.|+++.. |+..+ +++|++|+++++|++|++++ .+++||++.
T Consensus 162 ~~~G~~~~~-~~~~~~~~~~g~~~-~~~~~~~g~R~s~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~----~~~~gV~~~ 235 (546)
T 1kdg_A 162 KGQGYNQAT-INDNPNYKDHVFGY-SAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNG----SQILGVQTN 235 (546)
T ss_dssp HTTTCEECC-GGGSTTCCTTEEEE-CCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEET----TEEEEEEES
T ss_pred HHCCCCcCC-ccCCcCCCCcEEee-eeeccCCCcccCHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC----CEEEEEEEE
Confidence 999985321 01111 112211 111236799999876 87665 67899999999999999975 389999997
Q ss_pred eC-CCCee--EEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhc------CCcee-----ecCccccccCccCCC
Q 011442 162 DE-NGNQH--QAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKL------NISVV-----LDNAHIGKGMADNPM 227 (485)
Q Consensus 162 ~~-~g~~~--~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~------GI~~v-----~dlp~VG~nl~dH~~ 227 (485)
+. +|+.+ +++ ++|+||||||+++||+||++|||||+++|+++ ||+++ +||| ||+|||||+.
T Consensus 236 ~~~~g~~~~~~v~----~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~~~~~~~dlp-VG~nL~DH~~ 310 (546)
T 1kdg_A 236 DPTLGPNGFIPVT----PKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLP-VGMNAQDNPS 310 (546)
T ss_dssp CTTSSGGGEEEEE----EEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCC-TTTTBBCCCC
T ss_pred ecCCCceeEEEEE----eCCEEEEcCChhcCHHHHHHcCCCcHHHHHHhhccccCCcccccccccccCC-cccCcccCcc
Confidence 53 36532 343 35999999999999999999999999999999 69885 8999 9999999998
Q ss_pred ceeeecCCCc-ccchhHH---hhcchhhhhHHHhcCCCCCCCCCccccccccccccccccCCCCCCCChHHHHHHhhh--
Q 011442 228 NAVFVPSNRP-VEQSLIE---TVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRN-- 301 (485)
Q Consensus 228 ~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 301 (485)
..+.+..+.. ....... .........|.....|+..... ....++..... ... ....+ +..+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~----~~~--~~~~~-~~~~~~~~ 380 (546)
T 1kdg_A 311 INLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGAS---PKLNFWRAYSG----SDG--FTRYA-QGTVRPGA 380 (546)
T ss_dssp EEEEEECTTCCCGGGGTTTTTSCCHHHHHHHHHHSCSGGGSCS---CCEEEEEEEEC----TTS--CEEEE-EEEEEESC
T ss_pred eeEEEecCCcccccchhhhhcchhHHHHHHHHHcCCcccccCC---cceEEEEccCC----CCc--chhhh-hheecccc
Confidence 8776652211 0000000 0001122345544455322110 00011110000 000 00000 000000
Q ss_pred --c-cCCCccccccceeeeccccc-CceeEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHHHHHHHHcCccccccccc
Q 011442 302 --K-RTLPHEAFKGGFILEKIASP-ISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVRMAAKIVQSKHFLNYTQC 377 (485)
Q Consensus 302 --~-~~~~~~~~~~~~~~~~~~~P-~srG~V~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~ 377 (485)
. ...+........+...+.+| .|||+|+|+|+| ..|.|+++|+.+|.|++.++++++.+++++++.+...+.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~p~~srG~v~L~s~~--~~~~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~-- 456 (546)
T 1kdg_A 381 ASVNSSLPYNASQIFTITVYLSTGIQSRGRIGIDAAL--RGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMI-- 456 (546)
T ss_dssp SCCCCSSCCCGGGEEEEEEEECTTCCCCBEEEECTTC--CEEEEECCTTCSHHHHHHHHHHHHHHTTTGGGSTTCEEE--
T ss_pred cccccccccCCCCeEEEEeeecCCCCCCceEecCCCC--CCCcccccccCCchHHHHHHHHHHHHHHHhcCCCccccc--
Confidence 0 00000000112234456777 999999999987 567899999999999999999999999999876533321
Q ss_pred cchhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccC-----cccCCCCeeeccCCceEeecccCC
Q 011442 378 DQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG-----KVVSTEYKVLGIDRLRVVDGSTYD 452 (485)
Q Consensus 378 ~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG-----~VVD~~~rV~G~~nL~VvDaSv~P 452 (485)
.|+ ...+++++.++++....+.+|++|||||| +|||++|||||++|||||||||||
T Consensus 457 --------------~p~-----~~~~~~~~~~~~~~~~~t~~H~~GTcrMG~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P 517 (546)
T 1kdg_A 457 --------------TPD-----VTQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIP 517 (546)
T ss_dssp --------------ESC-----TTSCHHHHHHHSCGGGGCCSCCBCTTCBCSCTTTCSBCTTCBBTTCSSEEECSGGGCS
T ss_pred --------------CCC-----CCCCHHHHHHHHHHhcCcccccccceecCCCCCCeeECCCCeEccCCCcEEeEecccC
Confidence 132 23578889999988888999999999999 799999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHH
Q 011442 453 ESPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 453 ~~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
+++++||++|+||||||+||+|+++
T Consensus 518 ~~~~~np~~ti~aiAeraAd~I~~~ 542 (546)
T 1kdg_A 518 HLPTGNPQGTLMSAAEQAAAKILAL 542 (546)
T ss_dssp SCCSSCSHHHHHHHHHHHHHHHHHS
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999865
No 9
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=100.00 E-value=1e-60 Score=501.07 Aligned_cols=371 Identities=19% Similarity=0.215 Sum_probs=260.8
Q ss_pred cCCceeecCcccccchhhhcccccccCChhhhhc--CCCChhhhc-cccccchhccccCCCc---------hhhHHHHHH
Q 011442 17 STDGVLNARARVLGGGSSINAGFYTRASSQFIER--MGWDAKLVN-ESFPWVERQIVHQPKQ---------EGWQKALRD 84 (485)
Q Consensus 17 ~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~~--~gW~~~~l~-~~~~~~e~~~~~~~~~---------~~~~~~~~~ 84 (485)
+++.+.|+|||+|||||+||+|+|+|+++.+|+. .+|.|++|+ |||+++|+.+.+.+.. .+..+.|.+
T Consensus 95 ~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~~~~~~~~~~~p~~~~~~~ 174 (504)
T 1n4w_A 95 NYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSRE 174 (504)
T ss_dssp ECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHCGGGHHHHHHHH
T ss_pred cCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhccccchhhhhhHHHHHHHHHhCCCCCCcccccCCCcchHHHHHHH
Confidence 7788999999999999999999999999977654 579999999 9999999987653311 356688999
Q ss_pred HHHhCCCC----CCC-CCc---------cCCCCceeeeeeEEcCCCccccHHH-hhhhc-CCCCeEEEccceEEEEEeec
Q 011442 85 SLLDVGVS----PFN-GFT---------YDHIYGTKIGGTIFDRFGRRHTAAE-LLASA-NPQKITVLIRATVQKIVFDT 148 (485)
Q Consensus 85 ~~~~~G~~----~~~-~~~---------~~~~~g~~~g~~~~~~~g~R~sa~~-~l~~~-~~~nl~v~~~~~V~rI~~~~ 148 (485)
+++++|++ |.+ .++ ...+..|.. |...|++| |+++.. ||..+ +++|++|+++++|+||++++
T Consensus 175 a~~~~G~~~~~~p~~~d~n~~~~~g~g~~~~~~~~G~-c~~g~~~g-r~s~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~ 252 (504)
T 1n4w_A 175 QAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATE-VIYGNNHG-KQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTK 252 (504)
T ss_dssp HHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTC-STTCCSSS-BCCTTTTHHHHHHHTTSEEEEESEEEEEEEECT
T ss_pred HHHHcCCCCccCCcccccCccccccCccccCCccccc-ccccCCCC-ccCHHHHHHHHHHhcCCcEEEeCCEEEEEEECC
Confidence 99999984 221 000 000111111 22246789 999775 88655 57899999999999999985
Q ss_pred CCCCCeEEEEEEEeCCC---CeeEEEecCCCCceEEEecCCcchHHHHHHcC-CCChHHhhhcCCceeecCccccccCcc
Q 011442 149 SGKRPKAVGVIFKDENG---NQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG-VGPKAELEKLNISVVLDNAHIGKGMAD 224 (485)
Q Consensus 149 ~~~~~~a~GV~~~~~~g---~~~~v~a~~~a~keVILaAGai~TP~LLl~SG-IG~~~~L~~~GI~~v~dlp~VG~nl~d 224 (485)
++ .+++||++.+.+| +..+++| ++||||||+|+||+|||+|| || ||+++. |+||+||||
T Consensus 253 ~g--~~~~gV~~~~~~g~~~~~~~v~A-----~~VIlaaG~~~s~~lL~~Sg~ig--------~i~~~~--~~VG~nl~d 315 (504)
T 1n4w_A 253 DG--GYALTVEQKDTDGKLLATKEISC-----RYLFLGAGSLGSTELLVRARDTG--------TLPNLN--SEVGAGWGP 315 (504)
T ss_dssp TS--SEEEEEEEECTTCCEEEEEEEEE-----EEEEECSHHHHHHHHHHHHHHTT--------SSTTCC--TTTTCCBBC
T ss_pred CC--CEEEEEEEeCCCCccceeEEEee-----CEEEEccCCCCCHHHHHhccccC--------CCCCCC--hhhcccccc
Confidence 32 4899999986566 4566664 79999999999999999999 98 687664 589999999
Q ss_pred CCCceeeecCCCcccchhHHhhcchhhhhHHHhcCCCCCCCCCccccccccccccccccCCCCCCCChHHHHHHhhhccC
Q 011442 225 NPMNAVFVPSNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKRT 304 (485)
Q Consensus 225 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (485)
|+...+.+.... ... .+ .+ ..+.. ...+.. +. .+ . .+..+ +. . .
T Consensus 316 h~~~~~~~~~~~-~~~-----~~-----~~---~~~~~--------~~~~~~-----~~-~~-~--~~~~~---~~-~-~ 359 (504)
T 1n4w_A 316 NGNIMTARANHM-WNP-----TG-----AH---QSSIP--------ALGIDA-----WD-NS-D--SSVFA---EI-A-P 359 (504)
T ss_dssp TTCEEEEEECCT-TCC-----CC-----SC---CCSSC--------CEEEEE-----CC-SS-T--TCEEE---EE-E-C
T ss_pred CCcceeeeccCC-CCc-----cc-----Cc---CCCcc--------EEEEec-----cC-CC-C--CceEE---Ee-c-c
Confidence 997665432111 000 00 00 00000 000000 00 00 0 00000 00 0 0
Q ss_pred CCccccccceeeecccccCceeEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHH-HHHHHHcCccccccccccchhHH
Q 011442 305 LPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVR-MAAKIVQSKHFLNYTQCDQKSVE 383 (485)
Q Consensus 305 ~~~~~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 383 (485)
.+........++..+.+|.|||+|+|+++|+ .|+++|+.++ | +.+.++++ .+++|+++.+. +.
T Consensus 360 ~~~~~~~~~~~~~~~~~p~srG~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~--~~-------- 423 (504)
T 1n4w_A 360 MPAGLETWVSLYLAITKNPQRGTFVYDAATD----RAKLNWTRDQ-N-APAVNAAKALFDRINKANGT--IY-------- 423 (504)
T ss_dssp CCCSSCCCEEEEEEEECCCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC--CB--------
T ss_pred CChHHHhhhhhheeeeccCCCcEEEecCCCC----ceEeccCCCc-C-HHHHHHHHHHHHHHHhccCC--Cc--------
Confidence 0000001123445567899999999998765 6999999999 8 77888988 88888876542 11
Q ss_pred HHHhhhhccccCCCCCCCCCHHHHHHHHHh----hcccccccccccccCcccCCCCeeeccCCceEeecccCCCCCCCCc
Q 011442 384 AILNASVRANVNLVPKHTNDTKSLEQFCKD----TVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNP 459 (485)
Q Consensus 384 ~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~----~~~~~~H~~GTc~MG~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np 459 (485)
+ +++ |+++ ...+.+|++||||||+|||++|||||++|||||||||||+++++||
T Consensus 424 ----------~--------~~~----~~~~~~~~~~~~~~H~~GTcrMG~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np 481 (504)
T 1n4w_A 424 ----------R--------YDL----FGTQLKAFADDFCYHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNP 481 (504)
T ss_dssp ----------C--------CSS----SSSSCCSEECSEESSCBCSSCTTTTBCTTSBBTTCSSEEECSGGGSCSCCSSCS
T ss_pred ----------C--------Cch----hhhhhhhhccCccccccCCceeeeEECCCCeEeccCCeEEeeccccCCCCCcCh
Confidence 0 000 1111 4567899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhh
Q 011442 460 QGTVLMMGRYMGVKILRQRLG 480 (485)
Q Consensus 460 ~~ti~alA~r~A~~i~~~~~~ 480 (485)
++|+||||||+||+|+++...
T Consensus 482 ~~ti~aiAeraAd~I~~~~~~ 502 (504)
T 1n4w_A 482 FVTITALAERNVERIIKQDVT 502 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999987653
No 10
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=100.00 E-value=1.7e-59 Score=491.92 Aligned_cols=374 Identities=18% Similarity=0.168 Sum_probs=257.0
Q ss_pred cCCceeecCcccccchhhhcccccccCChhhhhc--CCCChhhhc-cccccchhccccCCC---------chhhHHHHHH
Q 011442 17 STDGVLNARARVLGGGSSINAGFYTRASSQFIER--MGWDAKLVN-ESFPWVERQIVHQPK---------QEGWQKALRD 84 (485)
Q Consensus 17 ~~~~~~~~rG~~lGGsS~iN~~~~~r~~~~~~~~--~gW~~~~l~-~~~~~~e~~~~~~~~---------~~~~~~~~~~ 84 (485)
+++.+.++|||+|||||+||+|+|+|+++++|+. .+|.|++|+ |||+++|+.+.+.+. ..+..+.|.+
T Consensus 100 ~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (507)
T 1coy_A 100 RFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRK 179 (507)
T ss_dssp ECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHCGGGHHHHHHHH
T ss_pred cCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhCCccchhcchhHHHHHHHHHhCCCCCCCccccccccchHHHHHHH
Confidence 7889999999999999999999999999977654 479999999 999999998765431 1456678999
Q ss_pred HHHhCCCC----CCC-CCc---------cCCCCceeeeeeEEcCCCccccHHH-hhhhc-CCCCeEEEccceEEEEEeec
Q 011442 85 SLLDVGVS----PFN-GFT---------YDHIYGTKIGGTIFDRFGRRHTAAE-LLASA-NPQKITVLIRATVQKIVFDT 148 (485)
Q Consensus 85 ~~~~~G~~----~~~-~~~---------~~~~~g~~~g~~~~~~~g~R~sa~~-~l~~~-~~~nl~v~~~~~V~rI~~~~ 148 (485)
+++++|+. |.+ .++ ...+..|.. |...|++| |+++.. ||..+ +++|++|+++++|+||++++
T Consensus 180 a~~~~G~~~~~~p~~~d~n~~~~~g~~~~~~~~~~g~-C~~gc~~g-R~s~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~ 257 (507)
T 1coy_A 180 TAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGE-VIYGNNAG-KKSLDKTYLAQAAATGKLTITTLHRVTKVAPAT 257 (507)
T ss_dssp HHHHTTCCEEECCBSBCHHHHHHHHTTCSCCSTTTTC-STTCCSSS-BCCTTTTHHHHHHHTTCEEEECSEEEEEEEECS
T ss_pred HHHHcCCCCccCCcccccCcccccCCCcccCcccccc-ccccCCCC-CcChHHHHHHHHHhcCCcEEEeCCEEEEEEECC
Confidence 99999993 221 000 000111111 22246789 999776 88765 67899999999999999986
Q ss_pred CCCCCeEEEEEEEeCCCC---eeEEEecCCCCceEEEecCCcchHHHHHHcC-CCChHHhhhcCCceeecCccccccCcc
Q 011442 149 SGKRPKAVGVIFKDENGN---QHQAFLAGNPKSEVILSCGAIGTPQMLKLSG-VGPKAELEKLNISVVLDNAHIGKGMAD 224 (485)
Q Consensus 149 ~~~~~~a~GV~~~~~~g~---~~~v~a~~~a~keVILaAGai~TP~LLl~SG-IG~~~~L~~~GI~~v~dlp~VG~nl~d 224 (485)
++ .+++||++.+.+|. .++++| ++||||||+|+||+|||+|| ||. ++. ..++||+||+|
T Consensus 258 ~g--~~~~gV~~~~~~g~~~~~~~~~A-----~~VIlaaGa~~sp~lL~~Sg~iG~--------lpn--l~d~VG~~l~~ 320 (507)
T 1coy_A 258 GS--GYSVTMEQIDEQGNVVATKVVTA-----DRVFFAAGSVGTSKLLVSMKAQGH--------LPN--LSSQVGEGWGN 320 (507)
T ss_dssp SS--SEEEEEEEECTTSCEEEEEEEEE-----EEEEECSHHHHHHHHHHHHHHTTS--------STT--SCTTTTCCBBC
T ss_pred CC--CEEEEEEEeCCCCcccccEEEEe-----CEEEEccCccCCHHHHHhcccCCC--------CCc--cChhhCCcccc
Confidence 32 48999999864563 566764 79999999999999999999 982 331 13579999999
Q ss_pred CCCceeeec-CCCcccchhHHhhcchhhhhHHHhcCCCCCCCCCccccccccccccccccCCCCCCCChHHHHHHhhhcc
Q 011442 225 NPMNAVFVP-SNRPVEQSLIETVGITKLGVYIEASSGFGESRDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQDYIRNKR 303 (485)
Q Consensus 225 H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (485)
|+....... .... ..+...... ....+..+.. + . .+..+ +. .
T Consensus 321 h~~~~~~~~~~~~~--------------------~~~~~~~~~-~~~~~~~~~~--------~-~--~~~~~---~~-~- 363 (507)
T 1coy_A 321 NGNIMVGRANHMWD--------------------ATGSKQATI-PTMGIDNWAD--------P-T--APIFA---EI-A- 363 (507)
T ss_dssp TTEEEEEEECCTTS--------------------CCCSCCCSS-CCEEEECTTC--------T-T--SCEEE---EE-E-
T ss_pred CCcccccccccccc--------------------cccccCCCc-ceEEEeccCC--------C-C--CCcEE---Ee-c-
Confidence 986432211 1000 000000000 0000000000 0 0 00000 00 0
Q ss_pred CCCccccccceeeecccccCceeEEEecCCCCCCCCeeecCCCCCHhHHHHHHHHHH-HHHHHHcCccccccccccchhH
Q 011442 304 TLPHEAFKGGFILEKIASPISTGELSLINTNVDDNPSVSFNYFSHPLDLKRCVDGVR-MAAKIVQSKHFLNYTQCDQKSV 382 (485)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~P~srG~V~l~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~ 382 (485)
..+........++..+.+|.|||+|+|+++|+ .|+++|+.++ | +.+.++++ .+++++++.+. +..
T Consensus 364 ~~~~~~~~~~~~~~~~~~p~s~G~V~L~s~~~----~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~--~~~------ 429 (507)
T 1coy_A 364 PLPAGLETYVSLYLAITKNPERARFQFNSGTG----KVDLTWAQSQ-N-QKGIDMAKKVFDKINQKEGT--IYR------ 429 (507)
T ss_dssp CCCCSSCCCEEEEEEEECCCCCBCEEEETTTT----EEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC--CBC------
T ss_pred cCCHHHhhheeeeEEEeeeCCCcEEEEccCCC----ceeeccCCCC-c-HHHHHHHHHHHHHHHhhcCC--ccc------
Confidence 00000001122344567899999999998765 8999999999 8 56777777 88899887542 220
Q ss_pred HHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccCcccCCCCeeeccCCceEeecccCCCCCCCCchhH
Q 011442 383 EAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVSTEYKVLGIDRLRVVDGSTYDESPGTNPQGT 462 (485)
Q Consensus 383 ~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG~VVD~~~rV~G~~nL~VvDaSv~P~~~~~np~~t 462 (485)
. +. ..+|+ ++| ...+.+|++||||||+|||++|||||++|||||||||||+++++||++|
T Consensus 430 -----------~---~~-~~~d~--~~~---~~~~~~H~~GTcrMG~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~Np~~t 489 (507)
T 1coy_A 430 -----------T---DL-FGVYY--KTW---GDDFTYHPLGGVLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVT 489 (507)
T ss_dssp -----------S---SC-C--CC--CSS---BCSEESCCBCSSCTTTTSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHH
T ss_pred -----------C---cc-cccch--hhh---cccccccccCCcchhheECCCCeEeccCCeEEeechhccCCCCcChHHH
Confidence 0 00 11221 122 4567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011442 463 VLMMGRYMGVKILRQRLG 480 (485)
Q Consensus 463 i~alA~r~A~~i~~~~~~ 480 (485)
|||||||+||+|++++++
T Consensus 490 i~alAeraAd~I~~~~~~ 507 (507)
T 1coy_A 490 ITALAERNMDKIISSDIQ 507 (507)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999998764
No 11
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=100.00 E-value=3.3e-43 Score=375.78 Aligned_cols=403 Identities=12% Similarity=0.090 Sum_probs=253.3
Q ss_pred CcccccchhhhcccccccCChhh----hhcCCC-ChhhhccccccchhccccCCC--chhhH-HHHHHHHHhCCCCCCCC
Q 011442 25 RARVLGGGSSINAGFYTRASSQF----IERMGW-DAKLVNESFPWVERQIVHQPK--QEGWQ-KALRDSLLDVGVSPFNG 96 (485)
Q Consensus 25 rG~~lGGsS~iN~~~~~r~~~~~----~~~~gW-~~~~l~~~~~~~e~~~~~~~~--~~~~~-~~~~~~~~~~G~~~~~~ 96 (485)
.+..+||.+.++.+...|..+.+ +.++++ .++++.++|++.+..+..... ..+.. ......+........ .
T Consensus 157 ~~~~vGG~~~~~~g~~~r~~~~e~~~~l~~~~v~~~~~l~~~~~~~~~l~~vgg~~~~~~~~~~~~~~~l~~~~~~~~-~ 235 (623)
T 3pl8_A 157 VTRVVGGMSTAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKLTEEYKGQR-D 235 (623)
T ss_dssp ECCSTTGGGGTCCCBCCCCCGGGSCCSSTTCHHHHHHHHHHHHHHHHHHHTEESCTTTTCHHHHHHHHHHHHHTTTTS-C
T ss_pred ccccccCcceeeccccccCChHHhhhhhcccCccChhhHHHHHHHHHHhcccccccccCccccccchHHHHHhhhhcc-c
Confidence 67889999999999988887632 222333 467788888888776543211 11111 111111221110000 0
Q ss_pred CccCCCCceeeeeeEEcCCCccccHHH-hhhhc-------CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCe
Q 011442 97 FTYDHIYGTKIGGTIFDRFGRRHTAAE-LLASA-------NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQ 167 (485)
Q Consensus 97 ~~~~~~~g~~~g~~~~~~~g~R~sa~~-~l~~~-------~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~ 167 (485)
.. ..............|+++.. +|..+ .++|++|+++++|++|++++++ .+++||++.+ .+|+.
T Consensus 236 --~~---~~p~a~~~~~~~~~r~s~~~~~l~~~~~l~~~~~~~nv~v~~~~~V~~i~~~~~~--~~v~GV~~~~~~~g~~ 308 (623)
T 3pl8_A 236 --FQ---QIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALN--SEIESLHIHDLISGDR 308 (623)
T ss_dssp --CE---ECCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEEEECSEEEEEEEECTTS--SCEEEEEEEETTTCCE
T ss_pred --cc---ccchhhccCCCCccccchHHhhhhhhhcchhhccCCCEEEEeCCEEEEEEEECCC--CEEEEEEEEEcCCCcE
Confidence 00 00000111122345677655 65433 3469999999999999997532 4899999987 36777
Q ss_pred eEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhhcCCceeecCccccccCccCCCceeeecCCCcccchhHHhhc
Q 011442 168 HQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEKLNISVVLDNAHIGKGMADNPMNAVFVPSNRPVEQSLIETVG 247 (485)
Q Consensus 168 ~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~~GI~~v~dlp~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~ 247 (485)
+++.+ ++||||+|++.||+||++||||++.+|+.+||++ |||+||+|||||+...+.+.++.+....+.+
T Consensus 309 ~~i~A-----~~VIlaaG~~~s~~lL~~sgiG~~~~l~~~~i~~--~l~~vG~nl~dh~~~~~~~~~~~~~~~~~~~--- 378 (623)
T 3pl8_A 309 FEIKA-----DVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPE--LLPSLGSYITEQSLVFCQTVMSTELIDSVKS--- 378 (623)
T ss_dssp EEECE-----EEEEECSCTTHHHHHHHTTTSSCCSSCCTTSCCS--SCTTTTBSCBCCCEEEEEEEECHHHHHHHTT---
T ss_pred EEEEC-----CEEEEcCCCcCCHHHHHhcCCCccccccccCCCC--CCcccccchhhCcCceEEEEECCcccccccc---
Confidence 77764 8999999999999999999999999999999999 9999999999999887776665432110000
Q ss_pred chhhhhHHHhcCCCCCCCC--------Cc-cccccccccc---------ccc----ccCCCCC-----CCChHHHHHHhh
Q 011442 248 ITKLGVYIEASSGFGESRD--------SI-HCHHGIMSAE---------IGQ----LSTIPPK-----QRTPEAIQDYIR 300 (485)
Q Consensus 248 ~~~~~~~~~~~~g~~~~~~--------~~-~~~~~~~~~~---------~~~----~~~~~~~-----~~~~~~~~~~~~ 300 (485)
+|. ..||..... .+ ......+... ... +....+. ....-+..+..+
T Consensus 379 -----~~~--~~g~~g~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (623)
T 3pl8_A 379 -----DMT--IRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQPSHPWHTQIHR 451 (623)
T ss_dssp -----TCE--EESCTTSTTCEEECCTTCTTCSSCHHHHHHHHHHHHHCTTCCCSSCTTCCCCEEECCCBTTBCEEEEEEC
T ss_pred -----ccc--ccccCCCcceecccccCcccccCCchhhhhhhhhhhcccccccccccccccccccccccccCcchhhhhh
Confidence 000 012111000 00 0000000000 000 0000000 000000000000
Q ss_pred h-c--cCCCc---cccccceeeecccccCceeEEEecC--CCCCCCCeeecCCCCCHh-HHHHHHHHHHHHHHHHcCccc
Q 011442 301 N-K--RTLPH---EAFKGGFILEKIASPISTGELSLIN--TNVDDNPSVSFNYFSHPL-DLKRCVDGVRMAAKIVQSKHF 371 (485)
Q Consensus 301 ~-~--~~~~~---~~~~~~~~~~~~~~P~srG~V~l~s--~d~~~~P~i~~~y~~~~~-D~~~~~~~~~~~~~i~~~~~~ 371 (485)
. + ..+.. ..+.....+...+.|.++|+|+|++ +|+++.|+++++|..++. |++.+.++++.++++++..+.
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~n~v~L~~~~~D~~g~P~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~ 531 (623)
T 3pl8_A 452 DAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGG 531 (623)
T ss_dssp CSCCCSCCCCSSCGGGEEEEEEEECCCCCTTCEEEEEEEEECTTSSEEEEEECCCCTTHHHHHHHHHHHHHHHHHTTTEE
T ss_pred hhccccccccccccceEEEEEEEEeeccCCCCEEEECCCCcCCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 0 00000 0000012235567899999999986 899999999999999999 999999999999999987543
Q ss_pred cccccccchhHHHHHhhhhccccCCCCCCCCCHHHHHHHHHhhcccccccccccccC------ccc-CCCCeeeccCCce
Q 011442 372 LNYTQCDQKSVEAILNASVRANVNLVPKHTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVV-STEYKVLGIDRLR 444 (485)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~d~~~~~~~~~~~~~~~H~~GTc~MG------~VV-D~~~rV~G~~nL~ 444 (485)
..... +..+ ....+++|++|||||| ||| |++|||||++|||
T Consensus 532 ~~~~~---------------------------~~~~-----~~~~~~~H~~gt~~mg~~~~~~~vvvd~~~~~~~~~~l~ 579 (623)
T 3pl8_A 532 FLPGS---------------------------LPQF-----MEPGLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLF 579 (623)
T ss_dssp ECTTS---------------------------CSEE-----CCTTTTCCCBCTTCBCSSTTTTTCSBCTTCBBTTCSSEE
T ss_pred cccCc---------------------------hhhc-----cCCCCcccCCCceeCCCCCCCCeeEECCCCCEecCCCeE
Confidence 32210 0000 0134689999999999 587 9999999999999
Q ss_pred EeecccCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhccC
Q 011442 445 VVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLGKAAG 484 (485)
Q Consensus 445 VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~~~~~~ 484 (485)
|+|+|+||+++++||++|+||||+|+|++|+++.++.+.+
T Consensus 580 v~d~s~~p~~~~~np~~t~~a~a~r~a~~i~~~~~~~~~~ 619 (623)
T 3pl8_A 580 LGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTPSPFT 619 (623)
T ss_dssp ECSGGGCCSCCCSCCHHHHHHHHHHHHHHHHHHCCCCCC-
T ss_pred EecCCccCCCCCcChHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999987666544
No 12
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=96.04 E-value=0.0092 Score=61.72 Aligned_cols=62 Identities=21% Similarity=0.362 Sum_probs=47.7
Q ss_pred hhcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc-hHHHHHH
Q 011442 126 ASANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 195 (485)
Q Consensus 126 ~~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~-TP~LLl~ 195 (485)
..+.+.|++|++++.|++|+.+++ .+++||++.+ +|+..++.+ +|.||||+|.+. ++.+|..
T Consensus 210 ~~~~~~Gv~i~~~t~v~~L~~~~~---g~v~GV~~~~-~g~~~~i~A----~k~VVlAtGG~~~n~~m~~~ 272 (510)
T 4at0_A 210 ETAEKLGVRAEYDMRVQTLVTDDT---GRVVGIVAKQ-YGKEVAVRA----RRGVVLATGSFAYNDKMIEA 272 (510)
T ss_dssp HHHHHTTCEEECSEEEEEEEECTT---CCEEEEEEEE-TTEEEEEEE----EEEEEECCCCCTTCHHHHHH
T ss_pred HHHHHcCCEEEecCEeEEEEECCC---CcEEEEEEEE-CCcEEEEEe----CCeEEEeCCChhhCHHHHHH
Confidence 334445899999999999998743 3899999976 566666764 369999999998 5665544
No 13
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=94.24 E-value=0.067 Score=56.05 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=45.6
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc-hHHHHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG-TPQMLKL 195 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~-TP~LLl~ 195 (485)
.+.+.+++|++++.|++|+.+++ .+++||.+.+.+|+..++.+ +.||||+|.+. .+.+|..
T Consensus 264 ~~~~~gv~i~~~t~v~~l~~~~~---g~v~GV~~~~~~G~~~~i~A-----~~VVlAtGg~~~~~~~~~~ 325 (572)
T 1d4d_A 264 NAVKRGTDIRLNSRVVRILEDAS---GKVTGVLVKGEYTGYYVIKA-----DAVVIAAGGFAKNNERVSK 325 (572)
T ss_dssp HHHHTTCEEESSEEEEEEEEC-----CCEEEEEEEETTTEEEEEEC-----SEEEECCCCCTTCHHHHHH
T ss_pred HHHHcCCeEEecCEEEEEEECCC---CeEEEEEEEeCCCcEEEEEc-----CEEEEeCCCCccCHHHHHH
Confidence 34446899999999999987652 28999999865676666763 99999999887 4555543
No 14
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=93.77 E-value=0.08 Score=55.36 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=44.1
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTP 190 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP 190 (485)
+.+.+++|+++++|++|+.+++ .+++||.+.+.+|+..++.+ |.||||+|.+...
T Consensus 260 ~~~~gv~i~~~~~v~~l~~~~~---g~v~Gv~~~~~~g~~~~i~A-----~~VVlAtGg~s~~ 314 (566)
T 1qo8_A 260 AKEQGIDTRLNSRVVKLVVNDD---HSVVGAVVHGKHTGYYMIGA-----KSVVLATGGYGMN 314 (566)
T ss_dssp HHHTTCCEECSEEEEEEEECTT---SBEEEEEEEETTTEEEEEEE-----EEEEECCCCCTTC
T ss_pred HHhcCCEEEeCCEEEEEEECCC---CcEEEEEEEeCCCcEEEEEc-----CEEEEecCCcccC
Confidence 4446899999999999998752 28999999865676666764 9999999998764
No 15
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=93.51 E-value=0.1 Score=54.59 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=45.0
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch-HHHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT-PQML 193 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T-P~LL 193 (485)
.+.+.+++|+++++|++|+.+++ .+++||.+.+.+|+..++.+ +.||||+|.+.. +.++
T Consensus 264 ~~~~~gv~i~~~~~v~~l~~~~~---g~v~Gv~~~~~~g~~~~i~a-----~~VVlAtGg~~~n~~~~ 323 (571)
T 1y0p_A 264 NAVKRNIDLRMNTRGIEVLKDDK---GTVKGILVKGMYKGYYWVKA-----DAVILATGGFAKNNERV 323 (571)
T ss_dssp HHHHTTCEEESSEEEEEEEECTT---SCEEEEEEEETTTEEEEEEC-----SEEEECCCCCTTCHHHH
T ss_pred HHHhcCCEEEeCCEeeEeEEcCC---CeEEEEEEEeCCCcEEEEEC-----CeEEEeCCCcccCHHHH
Confidence 34456899999999999998753 38999999865676666764 779999999865 4443
No 16
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=93.48 E-value=0.17 Score=53.44 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=44.2
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+.+.|++|+.++.|++|+.++ .+++||.+.+ .+|+..++.+ +.||||+|.+..
T Consensus 164 ~~~~~gv~i~~~~~v~~Li~~~----g~v~Gv~~~~~~~G~~~~i~A-----~~VVlATGG~~~ 218 (621)
T 2h88_A 164 RSLRYDTSYFVEYFALDLLMEN----GECRGVIALCIEDGTIHRFRA-----KNTVIATGGYGR 218 (621)
T ss_dssp HHTTSCCEEEETEEEEEEEEET----TEEEEEEEEETTTCCEEEEEE-----EEEEECCCCCGG
T ss_pred HHHhCCCEEEEceEEEEEEEEC----CEEEEEEEEEcCCCcEEEEEc-----CeEEECCCcccc
Confidence 3456799999999999999864 3899999876 4677667775 899999999874
No 17
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=93.19 E-value=0.14 Score=53.70 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=47.8
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+.+.+++|++++.|++|..+++ +++||++.+. .|+..++.+ +.||+|+|+. +..|+...|+
T Consensus 198 a~~~Ga~i~~~t~V~~l~~~~~----~v~gV~~~d~~tg~~~~i~A-----~~VV~AaG~w-s~~l~~~~g~ 259 (571)
T 2rgh_A 198 AAEDGAYLVSKMKAVGFLYEGD----QIVGVKARDLLTDEVIEIKA-----KLVINTSGPW-VDKVRNLNFT 259 (571)
T ss_dssp HHHTTCEEESSEEEEEEEEETT----EEEEEEEEETTTCCEEEEEB-----SCEEECCGGG-HHHHHTTCCS
T ss_pred HHHcCCeEEeccEEEEEEEeCC----EEEEEEEEEcCCCCEEEEEc-----CEEEECCChh-HHHHHHhhcc
Confidence 4456899999999999998753 8999998764 455556764 9999999986 8888776554
No 18
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=92.48 E-value=0.23 Score=51.79 Aligned_cols=62 Identities=21% Similarity=0.325 Sum_probs=49.8
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
+...+++|+++++|++|..+++ +++||.+.+. .|+..++.+ +.||+|+|+ .+.+|+...|+.
T Consensus 180 a~~~G~~i~~~~~V~~l~~~~g----~v~gV~~~d~~tg~~~~i~A-----~~VV~AaG~-~s~~l~~~~g~~ 242 (561)
T 3da1_A 180 AVARGAVALNYMKVESFIYDQG----KVVGVVAKDRLTDTTHTIYA-----KKVVNAAGP-WVDTLREKDRSK 242 (561)
T ss_dssp HHHTTCEEEESEEEEEEEEETT----EEEEEEEEETTTCCEEEEEE-----EEEEECCGG-GHHHHHHTTTCC
T ss_pred HHHcCCEEEcCCEEEEEEEcCC----eEEEEEEEEcCCCceEEEEC-----CEEEECCCc-chHHHHHhcCCC
Confidence 4456899999999999998753 8999999863 466667775 899999997 588888877764
No 19
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=92.45 E-value=0.18 Score=52.89 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=42.9
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.|++|+.++.|++|+.+++ .+++||.+.+ .+|+..++.+ +.||||+|.+..
T Consensus 153 ~~~~gv~i~~~~~v~~L~~~~~---g~v~Gv~~~~~~~g~~~~i~A-----~~VVlAtGg~~~ 207 (588)
T 2wdq_A 153 NLKNHTTIFSEWYALDLVKNQD---GAVVGCTALCIETGEVVYFKA-----RATVLATGGAGR 207 (588)
T ss_dssp HHHTTCEEEETEEEEEEEECTT---SCEEEEEEEETTTCCEEEEEE-----EEEEECCCCCGG
T ss_pred HHhCCCEEEeCcEEEEEEECCC---CEEEEEEEEEcCCCeEEEEEc-----CEEEECCCCCcc
Confidence 3446999999999999998633 3899999876 4676667775 899999999764
No 20
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=91.46 E-value=0.19 Score=48.67 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=44.2
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHc-CCC
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS-GVG 199 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~S-GIG 199 (485)
.+.+.+++|+++++|++|..+++ .+..|.. .+|+..++.+ +.||+|+|+. |++|+... |+.
T Consensus 159 ~~~~~Gv~i~~~~~v~~i~~~~~----~~~~v~~--~~g~~~~~~a-----~~VV~A~G~~-s~~l~~~~~g~~ 220 (369)
T 3dme_A 159 DAESDGAQLVFHTPLIAGRVRPE----GGFELDF--GGAEPMTLSC-----RVLINAAGLH-APGLARRIEGIP 220 (369)
T ss_dssp HHHHTTCEEECSCCEEEEEECTT----SSEEEEE--CTTSCEEEEE-----EEEEECCGGG-HHHHHHTEETSC
T ss_pred HHHHCCCEEECCCEEEEEEEcCC----ceEEEEE--CCCceeEEEe-----CEEEECCCcc-hHHHHHHhcCCC
Confidence 34456899999999999987654 2234544 3565556765 8999999985 88888776 653
No 21
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=91.31 E-value=0.4 Score=50.96 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=42.6
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.|++|+.++.|++|+.++ .+++||.+.+ .+|+..++.+ +.||||+|.+..
T Consensus 168 a~~~gv~i~~~~~v~~L~~~~----g~v~Gv~~~~~~~G~~~~i~A-----~~VVlATGG~~~ 221 (660)
T 2bs2_A 168 CLKLGVSIQDRKEAIALIHQD----GKCYGAVVRDLVTGDIIAYVA-----KGTLIATGGYGR 221 (660)
T ss_dssp HHHHTCEEECSEEEEEEEEET----TEEEEEEEEETTTCCEEEEEC-----SEEEECCCCCGG
T ss_pred HHhCCCEEEECcEEEEEEecC----CEEEEEEEEECCCCcEEEEEc-----CEEEEccCcchh
Confidence 344689999999999999864 3899999875 4676666764 899999999874
No 22
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=90.83 E-value=0.44 Score=49.38 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=41.0
Q ss_pred CCeEEEccceEEEEEeecCCC---CCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 131 QKITVLIRATVQKIVFDTSGK---RPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~---~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+|++|+.++.|++|+.++++. ..+++||.+.+ .+|+..++.+ |.||||+|.+..
T Consensus 152 ~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A-----~~VVlAtGg~~~ 209 (540)
T 1chu_A 152 PNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHA-----KAVVLATGGASK 209 (540)
T ss_dssp TTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEEC-----SEEEECCCCCGG
T ss_pred CCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEc-----CeEEECCCCccc
Confidence 799999999999999843210 01799999876 3566566663 899999998764
No 23
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=90.33 E-value=0.57 Score=49.23 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=41.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcchH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTP 190 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~TP 190 (485)
+.+|++|+.++.|++|+.+++ +++||.+.+ .+|+..++.+ +.||||+|.....
T Consensus 146 ~~gnv~i~~~~~v~~l~~~~g----~v~Gv~~~~~~~G~~~~i~A-----~~VVlAtGg~s~~ 199 (602)
T 1kf6_A 146 QFPQIQRFDEHFVLDILVDDG----HVRGLVAMNMMEGTLVQIRA-----NAVVMATGGAGRV 199 (602)
T ss_dssp TCTTEEEEETEEEEEEEEETT----EEEEEEEEETTTTEEEEEEC-----SCEEECCCCCGGG
T ss_pred hCCCcEEEeCCEEEEEEEeCC----EEEEEEEEEcCCCcEEEEEc-----CeEEECCCCCccc
Confidence 345699999999999998753 899998875 4676666764 7899999997654
No 24
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=89.70 E-value=0.33 Score=49.55 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=36.3
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 195 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~ 195 (485)
+.+.+.+|++++.|++|+.+++ +++||+.. +|++ +.+ +.||.+|....|-+.|+-
T Consensus 231 ~~~~Gg~I~~~~~V~~I~~~~~----~~~gV~~~--~g~~--~~a-----d~VV~~a~~~~~~~~Ll~ 285 (501)
T 4dgk_A 231 FQDLGGEVVLNARVSHMETTGN----KIEAVHLE--DGRR--FLT-----QAVASNADVVHTYRDLLS 285 (501)
T ss_dssp HHHTTCEEECSCCEEEEEEETT----EEEEEEET--TSCE--EEC-----SCEEECCC----------
T ss_pred HHHhCCceeeecceeEEEeeCC----eEEEEEec--CCcE--EEc-----CEEEECCCHHHHHHHhcc
Confidence 3456899999999999999874 89999884 5654 443 899999999888877664
No 25
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=87.73 E-value=0.33 Score=48.58 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=39.4
Q ss_pred cCCCCeEEEccc---eEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 128 ANPQKITVLIRA---TVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 128 ~~~~nl~v~~~~---~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
+.+.+++|++++ .|++|+.+++ +++||+.. +|. ++.+ +.||+|+|+. |++|+
T Consensus 171 a~~~Gv~i~~~t~~~~V~~i~~~~~----~v~gV~t~--~G~--~i~A-----d~VV~AtG~~-s~~l~ 225 (438)
T 3dje_A 171 AQRMGVKFVTGTPQGRVVTLIFENN----DVKGAVTA--DGK--IWRA-----ERTFLCAGAS-AGQFL 225 (438)
T ss_dssp HHHTTCEEEESTTTTCEEEEEEETT----EEEEEEET--TTE--EEEC-----SEEEECCGGG-GGGTS
T ss_pred HHhcCCEEEeCCcCceEEEEEecCC----eEEEEEEC--CCC--EEEC-----CEEEECCCCC-hhhhc
Confidence 445689999999 9999998753 78888774 553 3553 8999999985 66554
No 26
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=87.26 E-value=0.58 Score=49.77 Aligned_cols=51 Identities=14% Similarity=0.278 Sum_probs=40.7
Q ss_pred CeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcc
Q 011442 132 KITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 132 nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
|++|+.++.|++|+.++++ ..+++||.+.+ .+|+..++.+ |.||||+|.++
T Consensus 182 gV~i~~~~~v~dLi~~~~~-~g~v~Gv~~~~~~~g~~~~i~A-----k~VVLATGG~g 233 (662)
T 3gyx_A 182 QDRIIERIFIVKLLLDKNT-PNRIAGAVGFNLRANEVHIFKA-----NAMVVACGGAV 233 (662)
T ss_dssp TTTEECSEEECCCEECSSS-TTBEEEEEEEESSSSCEEEEEC-----SEEEECCCCBC
T ss_pred CcEEEEceEEEEEEEeCCc-cceEEEEEEEEcCCCcEEEEEe-----CEEEECCCccc
Confidence 8999999999999987531 13899998875 3566667764 89999999876
No 27
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=86.47 E-value=0.65 Score=45.32 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=41.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+.+.+++|+.++.|++|..+++ +++||+. .+| ++.+ +.||+|+|+. |+.|+...|+
T Consensus 159 ~~~~Gv~i~~~~~v~~i~~~~~----~v~gv~~--~~g---~i~a-----~~VV~A~G~~-s~~l~~~~g~ 214 (382)
T 1y56_B 159 AKEYGAKLLEYTEVKGFLIENN----EIKGVKT--NKG---IIKT-----GIVVNATNAW-ANLINAMAGI 214 (382)
T ss_dssp HHHTTCEEECSCCEEEEEESSS----BEEEEEE--TTE---EEEC-----SEEEECCGGG-HHHHHHHHTC
T ss_pred HHHCCCEEECCceEEEEEEECC----EEEEEEE--CCc---EEEC-----CEEEECcchh-HHHHHHHcCC
Confidence 3456899999999999987653 6778765 244 4553 8999999985 6677666543
No 28
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=86.22 E-value=1.1 Score=47.61 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=40.3
Q ss_pred Ce-EEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcch
Q 011442 132 KI-TVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 132 nl-~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
|+ +|+.++.|++|+.+++ +..+++||.+.+ .+|+..++.+ +.||||+|.+..
T Consensus 166 gv~~i~~~~~v~~L~~~~~-~~g~v~Gv~~~~~~~g~~~~i~A-----~~VVlAtGG~~~ 219 (643)
T 1jnr_A 166 GEENIYERVFIFELLKDNN-DPNAVAGAVGFSVREPKFYVFKA-----KAVILATGGATL 219 (643)
T ss_dssp CGGGEECSEEEEEEEECTT-CTTBEEEEEEEESSSSCEEEEEC-----SEEEECCCCBCS
T ss_pred CCcEEEecCEEEEEEEcCC-ccceeEEEEEEEecCCcEEEEEc-----CEEEECCCcccc
Confidence 89 9999999999998642 112899998765 3566666663 999999998864
No 29
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=85.85 E-value=0.79 Score=45.43 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=41.4
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
+.+.+.+|++++.|++|..+++ +++||.. +|+ ++.+ +.||+|+++-.+++||-
T Consensus 206 ~~~~G~~i~~~~~V~~i~~~~~----~~~gv~~---~g~--~~~a-----d~VV~a~~~~~~~~ll~ 258 (425)
T 3ka7_A 206 ISANGGKIHTGQEVSKILIENG----KAAGIIA---DDR--IHDA-----DLVISNLGHAATAVLCS 258 (425)
T ss_dssp HHHTTCEEECSCCEEEEEEETT----EEEEEEE---TTE--EEEC-----SEEEECSCHHHHHHHTT
T ss_pred HHHcCCEEEECCceeEEEEECC----EEEEEEE---CCE--EEEC-----CEEEECCCHHHHHHhcC
Confidence 3445899999999999998753 7888876 343 3543 89999999998888664
No 30
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=85.59 E-value=1.6 Score=44.68 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=41.8
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAI 187 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai 187 (485)
+...+++|+.+++|++|..+++ +++||.+.+.+|+..++.+ +.||+|.|.-
T Consensus 121 a~~~Gv~i~~~~~V~~v~~~~~----~v~gv~~~~~dG~~~~i~a-----d~VI~AdG~~ 171 (512)
T 3e1t_A 121 SERKGVDVRERHEVIDVLFEGE----RAVGVRYRNTEGVELMAHA-----RFIVDASGNR 171 (512)
T ss_dssp HHHTTCEEESSCEEEEEEEETT----EEEEEEEECSSSCEEEEEE-----EEEEECCCTT
T ss_pred HHhCCCEEEcCCEEEEEEEECC----EEEEEEEEeCCCCEEEEEc-----CEEEECCCcc
Confidence 3446899999999999998653 8999999876776667775 9999999974
No 31
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=85.50 E-value=1.1 Score=45.08 Aligned_cols=52 Identities=17% Similarity=0.359 Sum_probs=39.8
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
.+.+.+++|+++++|++|..+++ ++.+|++. +|. ++.+ +.||+|+|....|.
T Consensus 143 ~~~~~GV~i~~~~~V~~i~~~~~----~v~~V~~~--~G~--~i~A-----d~VVlAtGg~s~~~ 194 (447)
T 2i0z_A 143 RLKDLGVKIRTNTPVETIEYENG----QTKAVILQ--TGE--VLET-----NHVVIAVGGKSVPQ 194 (447)
T ss_dssp HHHHTTCEEECSCCEEEEEEETT----EEEEEEET--TCC--EEEC-----SCEEECCCCSSSGG
T ss_pred HHHHCCCEEEeCcEEEEEEecCC----cEEEEEEC--CCC--EEEC-----CEEEECCCCCcCCC
Confidence 34456899999999999987653 67888764 554 3553 89999999988774
No 32
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=85.31 E-value=3.4 Score=38.53 Aligned_cols=49 Identities=12% Similarity=0.223 Sum_probs=37.4
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-------C---CCeeEEEecCCCCceEEEecCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-------N---GNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-------~---g~~~~v~a~~~a~keVILaAGa 186 (485)
...+++++.+++|++|..+++ ++.||.+... + |...++.+ +.||+|+|.
T Consensus 131 ~~~gv~i~~~~~V~~i~~~~~----~v~gv~~~~~~~~~~~~~g~~g~~~~i~a-----d~VV~AtG~ 189 (284)
T 1rp0_A 131 ARPNVKLFNAVAAEDLIVKGN----RVGGVVTNWALVAQNHHTQSCMDPNVMEA-----KIVVSSCGH 189 (284)
T ss_dssp TSTTEEEEETEEEEEEEEETT----EEEEEEEEEHHHHTCTTTSSCCCCEEEEE-----EEEEECCCS
T ss_pred hcCCCEEEcCcEEEEEEecCC----eEEEEEEeccccccccCccccCceEEEEC-----CEEEECCCC
Confidence 447999999999999987753 7889987521 1 33456664 999999996
No 33
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=84.82 E-value=1.4 Score=45.13 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=43.3
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
+...+++|+.+++|++|..++ ++.+|.+.+ .+|+..++.+ +.||+|+|+. +..|+.
T Consensus 159 a~~~Gv~i~~~~~V~~l~~~~-----~~~~V~~~d~~~G~~~~i~A-----~~VV~AtG~~-s~~l~~ 215 (501)
T 2qcu_A 159 VVRKGGEVLTRTRATSARREN-----GLWIVEAEDIDTGKKYSWQA-----RGLVNATGPW-VKQFFD 215 (501)
T ss_dssp HHHTTCEEECSEEEEEEEEET-----TEEEEEEEETTTCCEEEEEE-----SCEEECCGGG-HHHHHH
T ss_pred HHHcCCEEEcCcEEEEEEEeC-----CEEEEEEEECCCCCEEEEEC-----CEEEECCChh-HHHHHH
Confidence 444689999999999998764 477888865 2566666775 8999999985 777765
No 34
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=84.64 E-value=0.83 Score=45.78 Aligned_cols=56 Identities=13% Similarity=0.305 Sum_probs=40.2
Q ss_pred cCCCCeEEEccceEEEEEee--------------cCCCCCeEEEEEEEeCCCCeeEE--EecCCCCceEEEecCCcchHH
Q 011442 128 ANPQKITVLIRATVQKIVFD--------------TSGKRPKAVGVIFKDENGNQHQA--FLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~--------------~~~~~~~a~GV~~~~~~g~~~~v--~a~~~a~keVILaAGai~TP~ 191 (485)
+.+.+++|+.+++|++|..+ .+ .++++|.. .+| ++ .+ +.||+|+|+. |++
T Consensus 191 ~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~---~~v~~V~t--~~g---~i~~~A-----d~VV~AtG~~-s~~ 256 (448)
T 3axb_A 191 ASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE---ARASAAVL--SDG---TRVEVG-----EKLVVAAGVW-SNR 256 (448)
T ss_dssp HHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC---EEEEEEEE--TTS---CEEEEE-----EEEEECCGGG-HHH
T ss_pred HHhCCCEEEcCCeEEEEEecccccccccccccccCC---CceEEEEe--CCC---EEeecC-----CEEEECCCcC-HHH
Confidence 34568999999999999873 11 35667765 345 34 54 8999999985 777
Q ss_pred HHHHcC
Q 011442 192 MLKLSG 197 (485)
Q Consensus 192 LLl~SG 197 (485)
|+...|
T Consensus 257 l~~~~g 262 (448)
T 3axb_A 257 LLNPLG 262 (448)
T ss_dssp HHGGGT
T ss_pred HHHHcC
Confidence 776654
No 35
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=84.12 E-value=0.97 Score=43.85 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=39.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+.+.+++|+.++.|++|..+++ + .+|+. .+| ++.+ +.||+|+|+ .|++|+...|+
T Consensus 164 a~~~Gv~i~~~~~V~~i~~~~~----~-~~V~t--~~g---~i~a-----~~VV~A~G~-~s~~l~~~~g~ 218 (381)
T 3nyc_A 164 IRRNQGQVLCNHEALEIRRVDG----A-WEVRC--DAG---SYRA-----AVLVNAAGA-WCDAIAGLAGV 218 (381)
T ss_dssp HHHTTCEEESSCCCCEEEEETT----E-EEEEC--SSE---EEEE-----SEEEECCGG-GHHHHHHHHTC
T ss_pred HHHCCCEEEcCCEEEEEEEeCC----e-EEEEe--CCC---EEEc-----CEEEECCCh-hHHHHHHHhCC
Confidence 4446899999999999987653 3 44443 344 4554 899999997 57777766553
No 36
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=83.51 E-value=1.1 Score=43.90 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=40.7
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+.+.+++|+.+++|++|..+++ ++++|... +| ++.+ +.||+|+|+. ++.|+...|+
T Consensus 184 ~~~~g~~i~~~~~v~~i~~~~~----~~~~v~~~--~g---~~~a-----~~vV~a~G~~-s~~l~~~~g~ 239 (405)
T 2gag_B 184 ANEMGVDIIQNCEVTGFIKDGE----KVTGVKTT--RG---TIHA-----GKVALAGAGH-SSVLAEMAGF 239 (405)
T ss_dssp HHHTTCEEECSCCEEEEEESSS----BEEEEEET--TC---CEEE-----EEEEECCGGG-HHHHHHHHTC
T ss_pred HHHCCCEEEcCCeEEEEEEeCC----EEEEEEeC--Cc---eEEC-----CEEEECCchh-HHHHHHHcCC
Confidence 3446899999999999987643 67777652 45 3554 8999999974 6667665543
No 37
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=83.46 E-value=1.4 Score=44.22 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=40.5
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+...+++|+.+++|++|..+++ +++||.+.+. +|+..++.+ +.||.|.|+-.
T Consensus 110 a~~~gv~i~~~~~v~~i~~~~~----~v~gv~~~~~~~G~~~~~~a-----d~VV~AdG~~s 162 (453)
T 3atr_A 110 AQDRGVEIWDLTTAMKPIFEDG----YVKGAVLFNRRTNEELTVYS-----KVVVEATGYSR 162 (453)
T ss_dssp HHHTTCEEESSEEEEEEEEETT----EEEEEEEEETTTTEEEEEEC-----SEEEECCGGGC
T ss_pred HHHcCCEEEeCcEEEEEEEECC----EEEEEEEEEcCCCceEEEEc-----CEEEECcCCch
Confidence 3346899999999999987653 7899998754 566556664 89999999743
No 38
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=81.48 E-value=1.7 Score=41.04 Aligned_cols=60 Identities=33% Similarity=0.445 Sum_probs=44.4
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
..+++++++++|++|.-++ .++.+|.+.+. +|+..++.+ +.||+|.|..-.+.+|..+|+
T Consensus 202 ~~gv~i~~~~~v~~i~~~~----~~v~~v~~~~~~~g~~~~i~~-----D~vi~a~G~~p~~~~l~~~gl 262 (319)
T 3cty_A 202 KRNIPYIMNAQVTEIVGDG----KKVTGVKYKDRTTGEEKLIET-----DGVFIYVGLIPQTSFLKDSGV 262 (319)
T ss_dssp HTTCCEECSEEEEEEEESS----SSEEEEEEEETTTCCEEEECC-----SEEEECCCEEECCGGGTTSCC
T ss_pred cCCcEEEcCCeEEEEecCC----ceEEEEEEEEcCCCceEEEec-----CEEEEeeCCccChHHHhhccc
Confidence 4689999999999997543 26888988752 566555653 899999998766666665554
No 39
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=80.91 E-value=4.9 Score=37.54 Aligned_cols=60 Identities=15% Similarity=0.271 Sum_probs=45.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+..++++++++.|++|.-+ .+..+|++.+ .+|+..++.+ +.||+|.|..-...+|..+|+
T Consensus 201 ~~~gv~~~~~~~v~~i~~~-----~~~~~v~~~~~~~g~~~~~~~-----D~vv~a~G~~p~~~~~~~~g~ 261 (323)
T 3f8d_A 201 KKPNVEFVLNSVVKEIKGD-----KVVKQVVVENLKTGEIKELNV-----NGVFIEIGFDPPTDFAKSNGI 261 (323)
T ss_dssp TCTTEEEECSEEEEEEEES-----SSEEEEEEEETTTCCEEEEEC-----SEEEECCCEECCHHHHHHTTC
T ss_pred hCCCcEEEeCCEEEEEecc-----CceeEEEEEECCCCceEEEEc-----CEEEEEECCCCChhHHhhcCe
Confidence 4469999999999999754 2677888875 2466556664 899999998777677777765
No 40
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=80.17 E-value=2.5 Score=41.35 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=36.1
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 196 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~S 196 (485)
+.+.+++|+.++.|++|..+++ . |.+...+| ++.+ +.||+|+|+ .++.|+...
T Consensus 163 a~~~Gv~i~~~~~V~~i~~~~~----~---v~v~t~~g---~i~a-----~~VV~A~G~-~s~~l~~~~ 215 (397)
T 2oln_A 163 AQAAGATLRAGETVTELVPDAD----G---VSVTTDRG---TYRA-----GKVVLACGP-YTNDLLEPL 215 (397)
T ss_dssp HHHTTCEEEESCCEEEEEEETT----E---EEEEESSC---EEEE-----EEEEECCGG-GHHHHHGGG
T ss_pred HHHcCCEEECCCEEEEEEEcCC----e---EEEEECCC---EEEc-----CEEEEcCCc-ChHHHhhhc
Confidence 3446899999999999987643 3 33333233 4554 889999998 466666543
No 41
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=79.74 E-value=4 Score=39.23 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=43.3
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+.++++++++.|++|.-+++ ++.+|.+...+|+..++.+ +.||+|.|..-.+.+|..+|+
T Consensus 214 ~~gv~i~~~~~v~~i~~~~~----~v~~v~~~~~~g~~~~i~~-----D~vi~a~G~~p~~~~l~~~~~ 273 (360)
T 3ab1_A 214 NGTIDVYLETEVASIEESNG----VLTRVHLRSSDGSKWTVEA-----DRLLILIGFKSNLGPLARWDL 273 (360)
T ss_dssp HTSEEEESSEEEEEEEEETT----EEEEEEEEETTCCEEEEEC-----SEEEECCCBCCSCGGGGGSSC
T ss_pred cCceEEEcCcCHHHhccCCC----ceEEEEEEecCCCeEEEeC-----CEEEECCCCCCCHHHHHhhcc
Confidence 45799999999999986542 7788888644665556664 899999996555455554443
No 42
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=77.40 E-value=4.3 Score=39.42 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=39.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+.+.+++|+.+++|++|..+++ +++||.+.+ .+...++.+ +.||.|.|+-.
T Consensus 112 ~~~~gv~i~~~~~v~~i~~~~~----~v~gv~~~~-~~~~~~~~a-----~~vV~A~G~~s 162 (397)
T 3cgv_A 112 AAKAGADVWVKSPALGVIKENG----KVAGAKIRH-NNEIVDVRA-----KMVIAADGFES 162 (397)
T ss_dssp HHHHTCEEESSCCEEEEEEETT----EEEEEEEEE-TTEEEEEEE-----EEEEECCCTTC
T ss_pred HHhCCCEEEECCEEEEEEEeCC----EEEEEEEEE-CCeEEEEEc-----CEEEECCCcch
Confidence 3346899999999999998753 889999875 344456664 89999999743
No 43
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=77.16 E-value=2 Score=44.47 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=36.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
...+++|+.+++|++|..+++ ++++|.+. +|+ ++.+ +.||+|.|+-..
T Consensus 231 ~~~Gv~I~~~t~V~~I~~~~~----~v~gV~l~--~G~--~i~A-----d~VVlA~G~~s~ 278 (549)
T 3nlc_A 231 IELGGEIRFSTRVDDLHMEDG----QITGVTLS--NGE--EIKS-----RHVVLAVGHSAR 278 (549)
T ss_dssp HHTTCEEESSCCEEEEEESSS----BEEEEEET--TSC--EEEC-----SCEEECCCTTCH
T ss_pred HhcCCEEEeCCEEEEEEEeCC----EEEEEEEC--CCC--EEEC-----CEEEECCCCChh
Confidence 345899999999999987653 78888874 554 3443 899999998553
No 44
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=75.58 E-value=4.3 Score=37.88 Aligned_cols=55 Identities=20% Similarity=0.454 Sum_probs=41.4
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
.+++|+++++|++|.-++ .++.+|++.+. +|+..++.+ +.||+|.|..-.+.+|.
T Consensus 193 ~gv~v~~~~~v~~i~~~~----~~v~~v~~~~~~~g~~~~i~~-----D~vi~a~G~~p~~~~l~ 248 (310)
T 1fl2_A 193 KNVDIILNAQTTEVKGDG----SKVVGLEYRDRVSGDIHNIEL-----AGIFVQIGLLPNTNWLE 248 (310)
T ss_dssp TTEEEESSEEEEEEEESS----SSEEEEEEEETTTCCEEEEEC-----SEEEECSCEEESCGGGT
T ss_pred CCeEEecCCceEEEEcCC----CcEEEEEEEECCCCcEEEEEc-----CEEEEeeCCccCchHHh
Confidence 699999999999997443 37889999763 466556664 89999999766555553
No 45
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=75.52 E-value=2 Score=45.66 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=37.0
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 195 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~ 195 (485)
+.+.+++|++++.|++|..+++ + .+|+. .+|.+ +.+ +.||+|+|+. ++.|+..
T Consensus 427 a~~~Gv~i~~~t~V~~l~~~~~----~-v~V~t--~~G~~--i~A-----d~VVlAtG~~-s~~l~~~ 479 (676)
T 3ps9_A 427 AQQQGLQIYYQYQLQNFSRKDD----C-WLLNF--AGDQQ--ATH-----SVVVLANGHQ-ISRFSQT 479 (676)
T ss_dssp HHHTTCEEEESCCEEEEEEETT----E-EEEEE--TTSCE--EEE-----SEEEECCGGG-GGCSTTT
T ss_pred HHhCCCEEEeCCeeeEEEEeCC----e-EEEEE--CCCCE--EEC-----CEEEECCCcc-hhccccc
Confidence 3446899999999999998764 3 24443 35543 554 8899999985 6655543
No 46
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=75.27 E-value=4.3 Score=37.87 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=43.1
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
...++++++++.|.+|.-+++ ++++|.+...+|+..++.+ +.||+|.|..-.+.+|.
T Consensus 194 ~~~gv~~~~~~~v~~i~~~~~----~~~~v~~~~~~g~~~~~~~-----D~vv~a~G~~p~~~~~~ 250 (315)
T 3r9u_A 194 KNEKIELITSASVDEVYGDKM----GVAGVKVKLKDGSIRDLNV-----PGIFTFVGLNVRNEILK 250 (315)
T ss_dssp HCTTEEEECSCEEEEEEEETT----EEEEEEEECTTSCEEEECC-----SCEEECSCEEECCGGGB
T ss_pred hcCCeEEEeCcEEEEEEcCCC----cEEEEEEEcCCCCeEEeec-----CeEEEEEcCCCCchhhh
Confidence 457999999999999976542 7889988744676566653 89999999765555443
No 47
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=74.26 E-value=2.1 Score=44.98 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
+|++|+ ++.|+.|..+++ +++||... +|. ++.+ +.||||+|+.-..+
T Consensus 137 ~GVeI~-~~~Vt~L~~e~g----~V~GV~t~--dG~--~i~A-----daVVLATG~~s~~~ 183 (637)
T 2zxi_A 137 ENLYIK-QEEVVDIIVKNN----QVVGVRTN--LGV--EYKT-----KAVVVTTGTFLNGV 183 (637)
T ss_dssp TTEEEE-ESCEEEEEESSS----BEEEEEET--TSC--EEEC-----SEEEECCTTCBTCE
T ss_pred CCCEEE-EeEEEEEEecCC----EEEEEEEC--CCc--EEEe-----CEEEEccCCCccCc
Confidence 799995 789999988653 78899874 563 3543 89999999875443
No 48
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=74.16 E-value=2.9 Score=45.65 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=42.0
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+.+.+++|+.++.|++|..+++ ++++|.. .+| ++.+ +.||+|+|+. |+.|+...|+
T Consensus 161 a~~~Gv~i~~~t~V~~i~~~~~----~v~~V~t--~~G---~i~A-----d~VV~AaG~~-s~~l~~~~g~ 216 (830)
T 1pj5_A 161 TESAGVTYRGSTTVTGIEQSGG----RVTGVQT--ADG---VIPA-----DIVVSCAGFW-GAKIGAMIGM 216 (830)
T ss_dssp HHHTTCEEECSCCEEEEEEETT----EEEEEEE--TTE---EEEC-----SEEEECCGGG-HHHHHHTTTC
T ss_pred HHHcCCEEECCceEEEEEEeCC----EEEEEEE--CCc---EEEC-----CEEEECCccc-hHHHHHHhCC
Confidence 4446899999999999987653 6777765 244 4554 8999999985 6787776664
No 49
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=73.18 E-value=4.3 Score=38.29 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=41.9
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
..++++++++.|.+|.-++ .++++|.+.+. .|+..++.+ +.||+|.|..-.+.+|.
T Consensus 221 ~~gv~i~~~~~v~~i~~~~----~~~~~v~~~~~~~g~~~~i~~-----D~vi~a~G~~p~~~~~~ 277 (338)
T 3itj_A 221 NEKIEILYNTVALEAKGDG----KLLNALRIKNTKKNEETDLPV-----SGLFYAIGHTPATKIVA 277 (338)
T ss_dssp CTTEEEECSEEEEEEEESS----SSEEEEEEEETTTTEEEEEEC-----SEEEECSCEEECCGGGB
T ss_pred cCCeEEeecceeEEEEccc----CcEEEEEEEECCCCceEEEEe-----CEEEEEeCCCCChhHhh
Confidence 3599999999999998654 36889999763 354556654 89999999776655543
No 50
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=73.05 E-value=5.4 Score=37.36 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=42.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-C-CCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-N-GNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~-g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
+.+.++++++++.|++|.-+++ ++++|.+.+. + |+..++.+ +.||+|.|..-.+.+|.
T Consensus 194 l~~~gv~i~~~~~v~~i~~~~~----~v~~v~~~~~~~~g~~~~i~~-----D~vv~a~G~~p~~~~~~ 253 (320)
T 1trb_A 194 VENGNIILHTNRTLEEVTGDQM----GVTGVRLRDTQNSDNIESLDV-----AGLFVAIGHSPNTAIFE 253 (320)
T ss_dssp HHTSSEEEECSCEEEEEEECSS----SEEEEEEECCTTCCCCEEEEC-----SEEEECSCEEESCGGGT
T ss_pred cccCCeEEEcCceeEEEEcCCC----ceEEEEEEeccCCCceEEEEc-----CEEEEEeCCCCChHHhc
Confidence 3457999999999999975542 6889998752 2 55456664 89999999765555543
No 51
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=71.44 E-value=5.6 Score=39.21 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=45.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
...+++|++++.|++|.-++ .++++|++. +|+ ++.+ +.||+|+|..-...+|..+|+-
T Consensus 205 ~~~GV~i~~~~~v~~i~~~~----~~v~~v~l~--dG~--~i~a-----D~Vv~a~G~~p~~~l~~~~gl~ 262 (415)
T 3lxd_A 205 RAHGVDLRTGAAMDCIEGDG----TKVTGVRMQ--DGS--VIPA-----DIVIVGIGIVPCVGALISAGAS 262 (415)
T ss_dssp HHTTCEEEETCCEEEEEESS----SBEEEEEES--SSC--EEEC-----SEEEECSCCEESCHHHHHTTCC
T ss_pred HhCCCEEEECCEEEEEEecC----CcEEEEEeC--CCC--EEEc-----CEEEECCCCccChHHHHhCCCC
Confidence 45699999999999997654 378888874 554 3443 8999999988777788888764
No 52
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=71.01 E-value=5.5 Score=39.14 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=45.3
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
.+.++++++++.|++|.-+++ ++++|++. +|+ ++.+ +.||+|+|..-...+|..+|+-
T Consensus 195 ~~~GV~i~~~~~v~~i~~~~~----~v~~V~~~--dG~--~i~a-----D~Vv~a~G~~p~~~l~~~~gl~ 252 (404)
T 3fg2_P 195 SGAGIRMHYGVRATEIAAEGD----RVTGVVLS--DGN--TLPC-----DLVVVGVGVIPNVEIAAAAGLP 252 (404)
T ss_dssp HHTTCEEECSCCEEEEEEETT----EEEEEEET--TSC--EEEC-----SEEEECCCEEECCHHHHHTTCC
T ss_pred HhCCcEEEECCEEEEEEecCC----cEEEEEeC--CCC--EEEc-----CEEEECcCCccCHHHHHhCCCC
Confidence 456999999999999986543 78888874 564 3443 9999999988777788888764
No 53
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=69.89 E-value=8.4 Score=37.74 Aligned_cols=50 Identities=26% Similarity=0.236 Sum_probs=36.8
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAI 187 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai 187 (485)
+.+.+++|+.+++|+.|..+++ ..+ |.+...+|...++.+ +.||+|+|.-
T Consensus 116 a~~~gv~i~~~~~v~~i~~~~~----~~~-v~v~~~~g~~~~~~a-----~~vV~A~G~~ 165 (421)
T 3nix_A 116 AARQGVDVEYEVGVTDIKFFGT----DSV-TTIEDINGNKREIEA-----RFIIDASGYG 165 (421)
T ss_dssp HHHHTCEEECSEEEEEEEEETT----EEE-EEEEETTSCEEEEEE-----EEEEECCGGG
T ss_pred HHhCCCEEEcCCEEEEEEEeCC----EEE-EEEEcCCCCEEEEEc-----CEEEECCCCc
Confidence 3345899999999999998754 222 555555787667775 8999999964
No 54
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=69.30 E-value=3.4 Score=43.52 Aligned_cols=45 Identities=16% Similarity=0.383 Sum_probs=34.1
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+|++| .++.|+.|..+++ +++||... +|. ++.+ +.||+|+|+.-.
T Consensus 138 ~GV~I-~~~~V~~L~~e~g----~V~GV~t~--dG~--~I~A-----d~VVLATGt~s~ 182 (651)
T 3ces_A 138 PNLMI-FQQAVEDLIVEND----RVVGAVTQ--MGL--KFRA-----KAVVLTVGTFLD 182 (651)
T ss_dssp TTEEE-EECCEEEEEESSS----BEEEEEET--TSE--EEEE-----EEEEECCSTTTC
T ss_pred CCCEE-EEEEEEEEEecCC----EEEEEEEC--CCC--EEEC-----CEEEEcCCCCcc
Confidence 79999 4789999987653 78898774 453 4554 899999998643
No 55
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=69.19 E-value=8.1 Score=39.48 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=43.0
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH-HHHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ-MLKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~-LLl~SGI 198 (485)
.+.+++|++++.|++|.-+++ .++++|.+...+|+ .++.+ +.||+|+|..-... +|..+|+
T Consensus 266 ~~~GV~i~~~~~V~~i~~~~~---~~v~~~~v~~~~G~-~~i~a-----D~Vv~A~G~~p~~~~~l~~~gl 327 (523)
T 1mo9_A 266 KEQGMEIISGSNVTRIEEDAN---GRVQAVVAMTPNGE-MRIET-----DFVFLGLGEQPRSAELAKILGL 327 (523)
T ss_dssp HHTTCEEESSCEEEEEEECTT---SBEEEEEEEETTEE-EEEEC-----SCEEECCCCEECCHHHHHHHTC
T ss_pred HhCCcEEEECCEEEEEEEcCC---CceEEEEEEECCCc-EEEEc-----CEEEECcCCccCCccCHHHcCC
Confidence 456899999999999975433 35656655544553 24553 89999999876666 6666665
No 56
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=68.38 E-value=3.5 Score=39.88 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=37.7
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 197 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SG 197 (485)
+.+.+++|+.++.|++|..+++ ++ +|.. .+| ++.+ +.||+|+|+. ++.|+...|
T Consensus 174 ~~~~g~~i~~~~~v~~i~~~~~----~~-~v~~--~~g---~~~a-----~~vV~A~G~~-s~~l~~~~~ 227 (382)
T 1ryi_A 174 AKMLGAEIFEHTPVLHVERDGE----AL-FIKT--PSG---DVWA-----NHVVVASGVW-SGMFFKQLG 227 (382)
T ss_dssp HHHTTCEEETTCCCCEEECSSS----SE-EEEE--TTE---EEEE-----EEEEECCGGG-THHHHHHTT
T ss_pred HHHCCCEEEcCCcEEEEEEECC----EE-EEEc--CCc---eEEc-----CEEEECCChh-HHHHHHhcC
Confidence 3445899999999999987643 34 5544 244 4554 8999999985 666665543
No 57
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=67.96 E-value=9.4 Score=35.51 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=42.5
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHc
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 196 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~S 196 (485)
..++++++++.|++|.-+++ ++.+|.+.+. +|+..++.+ +.||+|.|..-...+|..+
T Consensus 191 ~~gv~v~~~~~v~~i~~~~~----~v~~v~~~~~~~g~~~~i~~-----D~vi~a~G~~p~~~~l~~~ 249 (311)
T 2q0l_A 191 NDKIEFLTPYVVEEIKGDAS----GVSSLSIKNTATNEKRELVV-----PGFFIFVGYDVNNAVLKQE 249 (311)
T ss_dssp CTTEEEETTEEEEEEEEETT----EEEEEEEEETTTCCEEEEEC-----SEEEECSCEEECCGGGBCT
T ss_pred CCCeEEEeCCEEEEEECCCC----cEeEEEEEecCCCceEEEec-----CEEEEEecCccChhhhhcc
Confidence 46999999999999976532 6778888742 566556664 8999999976555555443
No 58
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=66.50 E-value=12 Score=33.44 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=34.7
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
++++++ +++|++|..+++ ++.+|... +|. ++.+ +.||+|+|..-..+
T Consensus 82 ~gv~i~-~~~v~~i~~~~~----~v~~v~~~--~g~--~i~a-----~~VV~A~G~~s~~~ 128 (232)
T 2cul_A 82 RPLHLF-QATATGLLLEGN----RVVGVRTW--EGP--PARG-----EKVVLAVGSFLGAR 128 (232)
T ss_dssp TTEEEE-ECCEEEEEEETT----EEEEEEET--TSC--CEEC-----SEEEECCTTCSSCE
T ss_pred CCcEEE-EeEEEEEEEeCC----EEEEEEEC--CCC--EEEC-----CEEEECCCCChhhc
Confidence 599999 679999987653 67787763 554 3443 89999999965554
No 59
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=66.06 E-value=2.9 Score=44.58 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=36.6
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 195 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~ 195 (485)
+.+.+++|++++.|++|..+++ + .+|+. .+|. .++.+ +.||+|+|+. ++.|+..
T Consensus 422 a~~~Gv~i~~~t~V~~l~~~~~----~-v~V~t--~~G~-~~i~A-----d~VVlAtG~~-s~~l~~~ 475 (689)
T 3pvc_A 422 AQQNGMTCHYQHELQRLKRIDS----Q-WQLTF--GQSQ-AAKHH-----ATVILATGHR-LPEWEQT 475 (689)
T ss_dssp HHHTTCEEEESCCEEEEEECSS----S-EEEEE--C-CC-CCEEE-----SEEEECCGGG-TTCSTTT
T ss_pred HHhCCCEEEeCCeEeEEEEeCC----e-EEEEe--CCCc-EEEEC-----CEEEECCCcc-hhccccc
Confidence 3456899999999999998754 3 24443 3443 13454 8999999986 6665544
No 60
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=65.73 E-value=8 Score=38.31 Aligned_cols=50 Identities=8% Similarity=0.211 Sum_probs=36.1
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
.+.+.+++|+++++|++|..+++ . +.+...+| ++.+ +.||+|+|+.-.|+
T Consensus 141 ~l~~~Gv~i~~~~~V~~i~~~~~----~---~~V~~~~g---~i~a-----d~VIlAtG~~S~p~ 190 (417)
T 3v76_A 141 EMKEAGVQLRLETSIGEVERTAS----G---FRVTTSAG---TVDA-----ASLVVASGGKSIPK 190 (417)
T ss_dssp HHHHHTCEEECSCCEEEEEEETT----E---EEEEETTE---EEEE-----SEEEECCCCSSCGG
T ss_pred HHHHCCCEEEECCEEEEEEEeCC----E---EEEEECCc---EEEe-----eEEEECCCCccCCC
Confidence 34446899999999999987653 2 33433344 4554 89999999988775
No 61
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=65.44 E-value=13 Score=38.64 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=40.3
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEe----CCCCe-------eEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD----ENGNQ-------HQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~----~~g~~-------~~v~a~~~a~keVILaAGai~T 189 (485)
+...+++|+.++.|++|+.+++ .+++||.+.+ .+|+. .++.+ +.||+|.|+-..
T Consensus 154 a~~~Gv~i~~g~~v~~l~~~~~---g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~A-----d~VV~AdG~~S~ 218 (584)
T 2gmh_A 154 AEALGVEVYPGYAAAEILFHED---GSVKGIATNDVGIQKDGAPKTTFERGLELHA-----KVTIFAEGCHGH 218 (584)
T ss_dssp HHHTTCEEETTCCEEEEEECTT---SSEEEEEECCEEECTTSCEEEEEECCCEEEC-----SEEEECCCTTCH
T ss_pred HHHcCCEEEcCCEEEEEEEcCC---CCEEEEEeCCccccCCCCcccccCCceEEEC-----CEEEEeeCCCch
Confidence 3345899999999999998764 3788998753 24542 35553 999999998765
No 62
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=65.32 E-value=5.4 Score=38.56 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=35.1
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKL 195 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~ 195 (485)
+.+.+++|+.++.|++|..+++ . |.+...+| ++.+ +.||+|+|+ .++.|+-.
T Consensus 160 ~~~~Gv~i~~~~~v~~i~~~~~----~---~~v~~~~g---~~~a-----~~vV~A~G~-~~~~l~~~ 211 (389)
T 2gf3_A 160 AEARGAKVLTHTRVEDFDISPD----S---VKIETANG---SYTA-----DKLIVSMGA-WNSKLLSK 211 (389)
T ss_dssp HHHTTCEEECSCCEEEEEECSS----C---EEEEETTE---EEEE-----EEEEECCGG-GHHHHGGG
T ss_pred HHHCCCEEEcCcEEEEEEecCC----e---EEEEeCCC---EEEe-----CEEEEecCc-cHHHHhhh
Confidence 3445899999999999987543 2 22333233 4554 899999998 46665543
No 63
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=64.99 E-value=12 Score=35.04 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=42.8
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
...++++++++.|++|.-++++ .++.+|.+.+. +|+..++.+ +.||+|.|..-...+|.
T Consensus 206 ~~~gv~i~~~~~v~~i~~~~~~--~~v~~v~~~~~~~g~~~~i~~-----D~vi~a~G~~p~~~~~~ 265 (333)
T 1vdc_A 206 SNPKIDVIWNSSVVEAYGDGER--DVLGGLKVKNVVTGDVSDLKV-----SGLFFAIGHEPATKFLD 265 (333)
T ss_dssp TCTTEEEECSEEEEEEEESSSS--SSEEEEEEEETTTCCEEEEEC-----SEEEECSCEEESCGGGT
T ss_pred hCCCeeEecCCceEEEeCCCCc--cceeeEEEEecCCCceEEEec-----CEEEEEeCCccchHHhh
Confidence 4579999999999999754321 26778888753 465556664 99999999876665543
No 64
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=64.40 E-value=9.6 Score=38.96 Aligned_cols=54 Identities=20% Similarity=0.470 Sum_probs=41.1
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
+|++|+++++|++|.-++ .++++|.+.+. +|+..++.+ +.||+|.|..-...+|
T Consensus 404 ~gV~v~~~~~v~~i~~~~----~~v~~v~~~~~~~g~~~~i~~-----D~vi~a~G~~pn~~~l 458 (521)
T 1hyu_A 404 KNVDIILNAQTTEVKGDG----SKVVGLEYRDRVSGDIHSVAL-----AGIFVQIGLLPNTHWL 458 (521)
T ss_dssp TTEEEECSEEEEEEEECS----SSEEEEEEEETTTCCEEEEEC-----SEEEECCCEEESCGGG
T ss_pred CCcEEEeCCEEEEEEcCC----CcEEEEEEEeCCCCceEEEEc-----CEEEECcCCCCCchHH
Confidence 699999999999997543 37889999863 466666664 8999999976554444
No 65
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=63.86 E-value=11 Score=35.24 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=41.3
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
+..+++|+++++|++|.-+ .++.+|.+.+. +|+..++.+ +.||+|.|..-...+|.
T Consensus 199 ~~~gv~i~~~~~v~~i~~~-----~~v~~v~~~~~~~g~~~~i~~-----D~vi~a~G~~p~~~~l~ 255 (325)
T 2q7v_A 199 ANPKMKFIWDTAVEEIQGA-----DSVSGVKLRNLKTGEVSELAT-----DGVFIFIGHVPNTAFVK 255 (325)
T ss_dssp TCTTEEEECSEEEEEEEES-----SSEEEEEEEETTTCCEEEEEC-----SEEEECSCEEESCGGGT
T ss_pred hcCCceEecCCceEEEccC-----CcEEEEEEEECCCCcEEEEEc-----CEEEEccCCCCChHHHh
Confidence 3469999999999999753 26788998752 566556664 89999999765555543
No 66
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=62.30 E-value=6.5 Score=41.03 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=38.6
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
+...+++|+.+++|+.|..+++ ...+|.+.+ +|...++.+ +.||.|.|+
T Consensus 138 a~~~Gv~i~~g~~V~~v~~~~g----~~~~V~~~~-~G~~~~i~A-----dlVV~AdG~ 186 (591)
T 3i3l_A 138 ARSRGITVHEETPVTDVDLSDP----DRVVLTVRR-GGESVTVES-----DFVIDAGGS 186 (591)
T ss_dssp HHHTTCEEETTCCEEEEECCST----TCEEEEEEE-TTEEEEEEE-----SEEEECCGG
T ss_pred HHhCCCEEEeCCEEEEEEEcCC----CEEEEEEec-CCceEEEEc-----CEEEECCCC
Confidence 4447999999999999987642 567888865 665566765 899999997
No 67
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=61.84 E-value=7.5 Score=39.31 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=34.9
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAI 187 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai 187 (485)
+...+.+|++++.|++|+++++ .+++||+.. +|+. +.| +.||++++-+
T Consensus 266 ~~~~Gg~i~l~t~V~~I~~d~~---g~v~gV~~~--~G~~--i~A-----d~VI~a~~~~ 313 (475)
T 3p1w_A 266 CAINGGTFMLNKNVVDFVFDDD---NKVCGIKSS--DGEI--AYC-----DKVICDPSYV 313 (475)
T ss_dssp HHHC--CEESSCCEEEEEECTT---SCEEEEEET--TSCE--EEE-----EEEEECGGGC
T ss_pred HHHcCCEEEeCCeEEEEEEecC---CeEEEEEEC--CCcE--EEC-----CEEEECCCcc
Confidence 3446899999999999998443 379999874 5653 454 8899999866
No 68
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=61.70 E-value=5 Score=38.58 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=33.4
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
+.+.+++|+.++.|++|..+++ . ..|. ..+| ++.+ +.||+|+|+. |+.|
T Consensus 159 ~~~~G~~i~~~~~V~~i~~~~~----~-~~v~--~~~g---~~~a-----~~vV~a~G~~-s~~l 207 (372)
T 2uzz_A 159 AKEAGCAQLFNCPVTAIRHDDD----G-VTIE--TADG---EYQA-----KKAIVCAGTW-VKDL 207 (372)
T ss_dssp HHHTTCEEECSCCEEEEEECSS----S-EEEE--ESSC---EEEE-----EEEEECCGGG-GGGT
T ss_pred HHHCCCEEEcCCEEEEEEEcCC----E-EEEE--ECCC---eEEc-----CEEEEcCCcc-HHhh
Confidence 3446899999999999987643 2 2333 3344 2554 8999999974 5544
No 69
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=61.01 E-value=8.8 Score=35.94 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=42.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
.+.++++++++.|.+|.-++ ...+|.+.+. .|+..++.+ +.||+|.|..-.+.+|..+|+
T Consensus 200 ~~~gv~~~~~~~v~~i~~~~-----~~~~v~~~~~~~g~~~~~~~-----D~vv~a~G~~p~~~~~~~~~~ 260 (332)
T 3lzw_A 200 HASKVNVLTPFVPAELIGED-----KIEQLVLEEVKGDRKEILEI-----DDLIVNYGFVSSLGPIKNWGL 260 (332)
T ss_dssp HHSSCEEETTEEEEEEECSS-----SCCEEEEEETTSCCEEEEEC-----SEEEECCCEECCCGGGGGSSC
T ss_pred hcCCeEEEeCceeeEEecCC-----ceEEEEEEecCCCceEEEEC-----CEEEEeeccCCCchHHhhcCc
Confidence 34689999999999986432 3567888763 455556653 899999997766666665554
No 70
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=60.45 E-value=28 Score=33.41 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=39.2
Q ss_pred CCCCeEEEccceEEEEEeecCC---------------CCCeEEEEEEEe----CCC------CeeEEEecCCCCceEEEe
Q 011442 129 NPQKITVLIRATVQKIVFDTSG---------------KRPKAVGVIFKD----ENG------NQHQAFLAGNPKSEVILS 183 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~---------------~~~~a~GV~~~~----~~g------~~~~v~a~~~a~keVILa 183 (485)
..+|++|+.++.|+.|+.++++ +..++.||.+.. .+| ...++.+ |.||+|
T Consensus 172 ~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~A-----k~VV~A 246 (344)
T 3jsk_A 172 QRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINA-----PVIIST 246 (344)
T ss_dssp TCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEEC-----SEEEEC
T ss_pred hCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEc-----CEEEEC
Confidence 3479999999999999987620 124899998742 233 2345664 899999
Q ss_pred cCCcc
Q 011442 184 CGAIG 188 (485)
Q Consensus 184 AGai~ 188 (485)
.|.-.
T Consensus 247 TG~~s 251 (344)
T 3jsk_A 247 TGHDG 251 (344)
T ss_dssp CCSSS
T ss_pred CCCCc
Confidence 99754
No 71
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=60.44 E-value=5.5 Score=40.24 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=36.1
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+.+.|++|+.++.| +|+.+++ +++||.+.+.+| ++. .+.||||+|+..
T Consensus 129 ~~~~gv~i~~~~~v-~l~~~~~----~v~Gv~v~~~~g---~~~-----a~~VVlAtGg~~ 176 (472)
T 2e5v_A 129 AREEGIPIIEDRLV-EIRVKDG----KVTGFVTEKRGL---VED-----VDKLVLATGGYS 176 (472)
T ss_dssp HHHTTCCEECCCEE-EEEEETT----EEEEEEETTTEE---ECC-----CSEEEECCCCCG
T ss_pred HHhCCCEEEECcEE-EEEEeCC----EEEEEEEEeCCC---eEE-----eeeEEECCCCCc
Confidence 34579999999999 9987753 899998854223 233 399999999865
No 72
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=60.42 E-value=14 Score=34.73 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=42.8
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
...++++++++.|.+|.-+ .++.+|.+.+. +|+..++.+ +.||+|.|.--...+|..+|+
T Consensus 202 ~~~gv~v~~~~~v~~i~~~-----~~~~~v~~~~~~~g~~~~i~~-----D~vi~a~G~~p~~~~l~~~~~ 262 (335)
T 2zbw_A 202 EEGRLEVLTPYELRRVEGD-----ERVRWAVVFHNQTQEELALEV-----DAVLILAGYITKLGPLANWGL 262 (335)
T ss_dssp HTTSSEEETTEEEEEEEES-----SSEEEEEEEETTTCCEEEEEC-----SEEEECCCEEEECGGGGGSCC
T ss_pred ccCCeEEecCCcceeEccC-----CCeeEEEEEECCCCceEEEec-----CEEEEeecCCCCchHhhhcce
Confidence 4568999999999999753 25778888643 565556654 899999997655555555444
No 73
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=60.28 E-value=7.2 Score=38.38 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=37.6
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
+...+.+|++++.|++|..+++ ++ | . .+|. ++.+ +.||+|+|+-.+++||-
T Consensus 199 ~~~~G~~i~~~~~V~~i~~~~~----~v--V--~-~~g~--~~~a-----d~Vv~a~~~~~~~~ll~ 249 (421)
T 3nrn_A 199 IMENKGKILTRKEVVEINIEEK----KV--Y--T-RDNE--EYSF-----DVAISNVGVRETVKLIG 249 (421)
T ss_dssp HHTTTCEEESSCCEEEEETTTT----EE--E--E-TTCC--EEEC-----SEEEECSCHHHHHHHHC
T ss_pred HHHCCCEEEcCCeEEEEEEECC----EE--E--E-eCCc--EEEe-----CEEEECCCHHHHHHhcC
Confidence 3456899999999999987543 44 3 2 3554 3443 89999999998888764
No 74
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=59.06 E-value=7.6 Score=38.22 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=45.9
Q ss_pred hcCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCCChHHhhh
Q 011442 127 SANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVGPKAELEK 206 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG~~~~L~~ 206 (485)
.+.+.+++|++++.|++|..++++...+ ..|+. .+| ++.+ +.||+|+|+...|++ -..|.| ...+++
T Consensus 118 ~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~--~~g---~i~a-----d~VVlAtG~~s~p~~-g~~G~g-~~la~~ 184 (401)
T 2gqf_A 118 ECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQV--NST---QWQC-----KNLIVATGGLSMPGL-GATPFG-YQIAEQ 184 (401)
T ss_dssp HHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEE--TTE---EEEE-----SEEEECCCCSSCGGG-TCCSHH-HHHHHH
T ss_pred HHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEE--CCC---EEEC-----CEEEECCCCccCCCC-CCChHH-HHHHHH
Confidence 3445689999999999998762110012 23433 333 4554 899999999888762 222222 134456
Q ss_pred cCCceeecCc
Q 011442 207 LNISVVLDNA 216 (485)
Q Consensus 207 ~GI~~v~dlp 216 (485)
+|++++-..|
T Consensus 185 ~G~~i~~~~p 194 (401)
T 2gqf_A 185 FGIPVIPPRA 194 (401)
T ss_dssp TTCCEEEEEE
T ss_pred CCCCcccCcc
Confidence 7776654444
No 75
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=57.10 E-value=4.5 Score=39.76 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=34.5
Q ss_pred hcCCCCeEEEccceEE---------EEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH-Hc
Q 011442 127 SANPQKITVLIRATVQ---------KIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK-LS 196 (485)
Q Consensus 127 ~~~~~nl~v~~~~~V~---------rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl-~S 196 (485)
.+...+++|+.+++|+ +|..+++ ++ +|.. .+| ++.+ +.||+|+|+ .|+.|+. ..
T Consensus 181 ~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~----~v-~v~~--~~g---~i~a-----~~VV~A~G~-~s~~l~~~~~ 244 (405)
T 3c4n_A 181 QAIGQGAGLLLNTRAELVPGGVRLHRLTVTNT----HQ-IVVH--ETR---QIRA-----GVIIVAAGA-AGPALVEQGL 244 (405)
T ss_dssp HHHTTTCEEECSCEEEEETTEEEEECBCC------------CB--CCE---EEEE-----EEEEECCGG-GHHHHHHHHH
T ss_pred HHHHCCCEEEcCCEEEeccccccccceEeeCC----eE-EEEE--CCc---EEEC-----CEEEECCCc-cHHHHHHHhc
Confidence 3445689999999999 7765432 33 4433 233 4554 899999998 5777776 54
Q ss_pred CC
Q 011442 197 GV 198 (485)
Q Consensus 197 GI 198 (485)
|+
T Consensus 245 g~ 246 (405)
T 3c4n_A 245 GL 246 (405)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 76
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=52.26 E-value=19 Score=30.28 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=35.0
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+.+.+++++.+ +|++|..+++ . +.+...+| ++.+ +.||+|.|.. |.++...|+
T Consensus 66 ~~~~gv~v~~~-~v~~i~~~~~----~---~~v~~~~g---~i~a-----d~vI~A~G~~--~~~~~~~g~ 118 (180)
T 2ywl_A 66 ARRYGAEVRPG-VVKGVRDMGG----V---FEVETEEG---VEKA-----ERLLLCTHKD--PTLPSLLGL 118 (180)
T ss_dssp HHHTTCEEEEC-CCCEEEECSS----S---EEEECSSC---EEEE-----EEEEECCTTC--CHHHHHHTC
T ss_pred HHHcCCEEEeC-EEEEEEEcCC----E---EEEEECCC---EEEE-----CEEEECCCCC--CCccccCCC
Confidence 34468999999 9999986543 2 23332345 4554 8999999975 556555554
No 77
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=50.50 E-value=13 Score=34.98 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=34.3
Q ss_pred CeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 132 KITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 132 nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
+++|+++++|++|..+++ . |.+...+|+. ...+ +.||+|.|+-...++|
T Consensus 119 g~~i~~~~~v~~i~~~~~----~---~~v~~~~g~~-~~~a-----~~vV~a~g~~~~~~~~ 167 (336)
T 1yvv_A 119 DMPVSFSCRITEVFRGEE----H---WNLLDAEGQN-HGPF-----SHVIIATPAPQASTLL 167 (336)
T ss_dssp TCCEECSCCEEEEEECSS----C---EEEEETTSCE-EEEE-----SEEEECSCHHHHGGGG
T ss_pred cCcEEecCEEEEEEEeCC----E---EEEEeCCCcC-cccc-----CEEEEcCCHHHHHHhh
Confidence 789999999999987653 2 3333445643 2223 8999999987666655
No 78
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=50.04 E-value=16 Score=36.28 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=37.4
Q ss_pred hhhh-cCCCCeEEEccceEEEEEeecCCCCCeEEEEEE--EeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 124 LLAS-ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIF--KDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 124 ~l~~-~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~--~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
|+.. +.+-+.+|..+++|++|..+.++ .+..+|.+ .+..|+..++.+ +.||||.|+ +|.
T Consensus 132 ~l~~~~~~~~~~i~~~~~V~~i~~~~~~--~~~~~~~V~~~~g~g~~~~~~~-----d~lVlAtG~--~p~ 193 (463)
T 3s5w_A 132 YLRWVASHFQEQSRYGEEVLRIEPMLSA--GQVEALRVISRNADGEELVRTT-----RALVVSPGG--TPR 193 (463)
T ss_dssp HHHHHHTTCTTTEEESEEEEEEEEEEET--TEEEEEEEEEEETTSCEEEEEE-----SEEEECCCC--EEC
T ss_pred HHHHHHHHcCCeEEeCCEEEEEEEecCC--CceEEEEEEEecCCCceEEEEe-----CEEEECCCC--CCC
Confidence 4433 34446789999999999886321 24443443 333355556664 899999997 554
No 79
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=49.60 E-value=32 Score=32.78 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=38.8
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+...+++++.+++|+.+..+++ ++++|.... ++...++.+ +-||-|-|+ +|
T Consensus 112 a~~~G~~~~~~~~v~~~~~~~~----~~~~v~~~~-~~~~~~~~a-----~~vIgAdG~-~S 162 (397)
T 3oz2_A 112 AAKAGADVWVKSPALGVIKENG----KVAGAKIRH-NNEIVDVRA-----KMVIAADGF-ES 162 (397)
T ss_dssp HHHHTCEEESSCCEEEEEEETT----EEEEEEEEE-TTEEEEEEE-----EEEEECCCT-TC
T ss_pred HHhcCcEEeeeeeeeeeeeccc----eeeeeeecc-cccceEEEE-----eEEEeCCcc-cc
Confidence 4456899999999999988764 788888764 666667774 777777775 44
No 80
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=49.10 E-value=28 Score=33.61 Aligned_cols=58 Identities=7% Similarity=0.082 Sum_probs=40.7
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
+...++++++++.|++|..+++ ...|.+ .+|+ ++.+ +.||+|+|..-...||..+|+-
T Consensus 197 l~~~gv~i~~~~~v~~i~~~~~-----~~~v~~--~~g~--~i~~-----d~vv~a~G~~p~~~l~~~~g~~ 254 (384)
T 2v3a_A 197 LEGLGVRFHLGPVLASLKKAGE-----GLEAHL--SDGE--VIPC-----DLVVSAVGLRPRTELAFAAGLA 254 (384)
T ss_dssp HHTTTCEEEESCCEEEEEEETT-----EEEEEE--TTSC--EEEE-----SEEEECSCEEECCHHHHHTTCC
T ss_pred HHHcCCEEEeCCEEEEEEecCC-----EEEEEE--CCCC--EEEC-----CEEEECcCCCcCHHHHHHCCCC
Confidence 3456999999999999976532 234444 3564 3444 8999999987666677777763
No 81
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=48.35 E-value=34 Score=32.56 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=24.6
Q ss_pred CCCCeEEEccceEEEEEeecCC--CCCeEEEEEEE
Q 011442 129 NPQKITVLIRATVQKIVFDTSG--KRPKAVGVIFK 161 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~--~~~~a~GV~~~ 161 (485)
..+|++|+.++.|+.|+.+.+. +..+++||.+.
T Consensus 158 ~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~ 192 (326)
T 2gjc_A 158 QLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTN 192 (326)
T ss_dssp TSTTEEEETTEEEEEEEECCCC-----CEEEEEEE
T ss_pred HhcCcEEEecceeeeeeecccccCCCcEEEEEEec
Confidence 4479999999999999987421 11389999874
No 82
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=47.16 E-value=28 Score=34.75 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=40.5
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
+.+.+++|++++.|++|.-+++ +++ |.+. +|+ ++.+ +.||+|+|..-...||..+|+
T Consensus 212 l~~~GV~i~~~~~v~~i~~~~~----~v~-v~~~--~g~--~i~a-----D~Vv~a~G~~p~~~l~~~~gl 268 (472)
T 3iwa_A 212 LEKNDVVVHTGEKVVRLEGENG----KVA-RVIT--DKR--TLDA-----DLVILAAGVSPNTQLARDAGL 268 (472)
T ss_dssp HHHTTCEEECSCCEEEEEESSS----BEE-EEEE--SSC--EEEC-----SEEEECSCEEECCHHHHHHTC
T ss_pred HHhcCCEEEeCCEEEEEEccCC----eEE-EEEe--CCC--EEEc-----CEEEECCCCCcCHHHHHhCCc
Confidence 3456999999999999975332 444 5553 554 3443 899999998766667766665
No 83
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=46.83 E-value=20 Score=35.73 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=34.8
Q ss_pred cCCCCeEEEccceEEEEEeec-CCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCc
Q 011442 128 ANPQKITVLIRATVQKIVFDT-SGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAI 187 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~-~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai 187 (485)
+...+.+|++++.|++|..+. + .++++|.. +|+ ++.+ +.||+|+|..
T Consensus 252 ~~~~G~~i~~~~~V~~i~~~~~~---~~~~~V~~---~g~--~~~a-----d~VV~a~~~~ 299 (453)
T 2bcg_G 252 SAIYGGTYMLDTPIDEVLYKKDT---GKFEGVKT---KLG--TFKA-----PLVIADPTYF 299 (453)
T ss_dssp HHHTTCEEECSCCCCEEEEETTT---TEEEEEEE---TTE--EEEC-----SCEEECGGGC
T ss_pred HHHcCCEEECCCEEEEEEEECCC---CeEEEEEE---CCe--EEEC-----CEEEECCCcc
Confidence 334578999999999999872 2 37888875 343 3443 8899999986
No 84
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=45.80 E-value=30 Score=36.26 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=34.2
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+|++|+ +..|+.|..+++ ++.||... +|. ++.+ +.||+|+|+.-.
T Consensus 130 ~~GV~I~-~~~V~~L~~d~g----~V~GV~t~--~G~--~i~A-----d~VVLATG~~s~ 175 (641)
T 3cp8_A 130 EPNIDLL-QDTVIGVSANSG----KFSSVTVR--SGR--AIQA-----KAAILACGTFLN 175 (641)
T ss_dssp CTTEEEE-ECCEEEEEEETT----EEEEEEET--TSC--EEEE-----EEEEECCTTCBT
T ss_pred CCCCEEE-eeEEEEEEecCC----EEEEEEEC--CCc--EEEe-----CEEEECcCCCCC
Confidence 3699996 559999987753 78888763 564 4554 899999998633
No 85
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=45.78 E-value=47 Score=32.77 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=36.8
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcch
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
.+++|++++.|++|.-+++ ...|.+.+. +|+..++.+ +.||+|.|..-.
T Consensus 329 ~~v~i~~~~~v~~v~~~~~-----~~~v~~~~~~~g~~~~~~~-----D~Vv~AtG~~p~ 378 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATAQ-----GIELALRDAGSGELSVETY-----DAVILATGYERQ 378 (463)
T ss_dssp CCSEEETTEEEEEEEEETT-----EEEEEEEETTTCCEEEEEE-----SEEEECCCEECC
T ss_pred CCeEEEeCCEEEEEEecCC-----EEEEEEEEcCCCCeEEEEC-----CEEEEeeCCCCC
Confidence 6899999999999986542 345666544 566666665 999999997655
No 86
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=45.54 E-value=16 Score=35.82 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=42.6
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
.+.++++++++.|++|.-++ ++.+|++. +|+ ++.+ +.||+|.|..-...+|..+|+-
T Consensus 196 ~~~GV~i~~~~~v~~i~~~~-----~~~~v~~~--dg~--~i~a-----D~Vv~a~G~~p~~~l~~~~gl~ 252 (410)
T 3ef6_A 196 TELGVQVELGTGVVGFSGEG-----QLEQVMAS--DGR--SFVA-----DSALICVGAEPADQLARQAGLA 252 (410)
T ss_dssp HHHTCEEECSCCEEEEECSS-----SCCEEEET--TSC--EEEC-----SEEEECSCEEECCHHHHHTTCC
T ss_pred HHCCCEEEeCCEEEEEeccC-----cEEEEEEC--CCC--EEEc-----CEEEEeeCCeecHHHHHhCCCc
Confidence 45699999999999986432 45677764 564 3443 9999999988777788887764
No 87
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=44.53 E-value=25 Score=34.66 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=42.3
Q ss_pred CCCCeEEEccceEEEEEee-cCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 129 NPQKITVLIRATVQKIVFD-TSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~-~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
...++++++++.|++|.-+ .+ .++++|.+. +|+ ++.+ +.||+|.|..-...||..+|+-
T Consensus 202 ~~~GV~i~~~~~v~~i~~~~~~---~~v~~v~~~--~G~--~i~~-----D~Vv~a~G~~p~~~l~~~~gl~ 261 (431)
T 1q1r_A 202 REAGVDIRTGTQVCGFEMSTDQ---QKVTAVLCE--DGT--RLPA-----DLVIAGIGLIPNCELASAAGLQ 261 (431)
T ss_dssp HHHTCEEECSCCEEEEEECTTT---CCEEEEEET--TSC--EEEC-----SEEEECCCEEECCHHHHHTTCC
T ss_pred HhCCeEEEeCCEEEEEEeccCC---CcEEEEEeC--CCC--EEEc-----CEEEECCCCCcCcchhhccCCC
Confidence 4468999999999999752 22 267777763 554 3443 8999999987666677777764
No 88
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=43.34 E-value=24 Score=34.80 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=36.4
Q ss_pred ccCCCCeeeccCCceEe-ecccCCCCC-----CCCchh--HHHHHHHHHHHHHHHHhhhh
Q 011442 430 VVSTEYKVLGIDRLRVV-DGSTYDESP-----GTNPQG--TVLMMGRYMGVKILRQRLGK 481 (485)
Q Consensus 430 VVD~~~rV~G~~nL~Vv-DaSv~P~~~-----~~np~~--ti~alA~r~A~~i~~~~~~~ 481 (485)
+||+.+|+-+++|+|.+ |++.+|... ...|.. .+...|.-+|+.|+++..++
T Consensus 276 ~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~ 335 (430)
T 3hyw_A 276 IVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNN 335 (430)
T ss_dssp CCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999977 677777532 223322 34556777788887765554
No 89
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=42.78 E-value=16 Score=34.50 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=36.0
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
.+.+++++.+++|++|..+++ ..++|. ..+| ++.+ +.||+|.|+...|.++.
T Consensus 87 ~~~~~~~~~~~~v~~i~~~~~----~~~~v~--~~~g---~~~~-----d~vV~AtG~~~~~~~~~ 138 (357)
T 4a9w_A 87 QKYALPVLRPIRVQRVSHFGE----RLRVVA--RDGR---QWLA-----RAVISATGTWGEAYTPE 138 (357)
T ss_dssp HHTTCCEECSCCEEEEEEETT----EEEEEE--TTSC---EEEE-----EEEEECCCSGGGBCCCC
T ss_pred HHcCCEEEcCCEEEEEEECCC----cEEEEE--eCCC---EEEe-----CEEEECCCCCCCCCCCC
Confidence 446889999999999987653 333343 2344 4554 89999999877765543
No 90
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=42.77 E-value=9.5 Score=38.42 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=23.0
Q ss_pred CCeeeccCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 011442 434 EYKVLGIDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLG 480 (485)
Q Consensus 434 ~~rV~G~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~~ 480 (485)
..+.-.++|||.|.+|++|.. +=| -++.=|..+|+.|+++..+
T Consensus 451 ~~~~t~i~gLyl~G~~t~pG~--Gv~--ga~~SG~~aA~~il~dL~g 493 (501)
T 4dgk_A 451 HNRDKTITNLYLVGAGTHPGA--GIP--GVIGSAKATAGLMLEDLIG 493 (501)
T ss_dssp -----CCTTEEECCCH--------HH--HHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCEEEECCCCCCcc--cHH--HHHHHHHHHHHHHHHHhcC
Confidence 344567899999999998842 111 1222378899999988654
No 91
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=42.55 E-value=34 Score=34.08 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=38.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH--HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM--LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L--Ll~SGI 198 (485)
.+.+++|+++++|++|.-+++ . ..|.+.+.+|+..++.+ +.||+|+|..-...+ |..+|+
T Consensus 227 ~~~gv~i~~~~~v~~i~~~~~----~-~~v~~~~~~g~~~~i~~-----D~vv~a~G~~p~~~~l~l~~~gl 288 (468)
T 2qae_A 227 KNEKMKFMTSTKVVGGTNNGD----S-VSLEVEGKNGKRETVTC-----EALLVSVGRRPFTGGLGLDKINV 288 (468)
T ss_dssp HHTCCEEECSCEEEEEEECSS----S-EEEEEECC---EEEEEE-----SEEEECSCEEECCTTSCHHHHTC
T ss_pred hcCCcEEEeCCEEEEEEEcCC----e-EEEEEEcCCCceEEEEC-----CEEEECCCcccCCCCCCchhcCC
Confidence 456899999999999975432 2 34555432454445654 899999998766555 455554
No 92
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=42.00 E-value=24 Score=35.34 Aligned_cols=59 Identities=15% Similarity=0.312 Sum_probs=39.5
Q ss_pred CCeE--EEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHHHHcC
Q 011442 131 QKIT--VLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 197 (485)
Q Consensus 131 ~nl~--v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SG 197 (485)
-+++ |..+++|++|..+++. ...-|.+.+. +|+..++.+ +.||+|.|....|+++..-|
T Consensus 114 ~gv~~~i~~~~~V~~v~~~~~~---~~~~V~~~~~~~g~~~~~~~-----d~VVvAtG~~s~p~~p~ipG 175 (464)
T 2xve_A 114 AGVRKYIRFNTAVRHVEFNEDS---QTFTVTVQDHTTDTIYSEEF-----DYVVCCTGHFSTPYVPEFEG 175 (464)
T ss_dssp HTCGGGEECSEEEEEEEEETTT---TEEEEEEEETTTTEEEEEEE-----SEEEECCCSSSSBCCCCCBT
T ss_pred cCCcceEEeCCEEEEEEEcCCC---CcEEEEEEEcCCCceEEEEc-----CEEEECCCCCCCCccCCCCC
Confidence 3666 8899999999876531 1234555442 354455554 99999999888887654444
No 93
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=40.90 E-value=16 Score=34.35 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=38.6
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
...+++++++++|++|.-++ ++.+|.+.+. +|+..++.+ +.||+|.|..-.+.+|
T Consensus 202 ~~~gV~v~~~~~v~~i~~~~-----~~~~v~~~~~~~g~~~~i~~-----D~vi~a~G~~p~~~~~ 257 (335)
T 2a87_A 202 NNDKIRFLTNHTVVAVDGDT-----TVTGLRVRDTNTGAETTLPV-----TGVFVAIGHEPRSGLV 257 (335)
T ss_dssp HCTTEEEECSEEEEEEECSS-----SCCEEEEEEETTSCCEEECC-----SCEEECSCEEECCTTT
T ss_pred ccCCcEEEeCceeEEEecCC-----cEeEEEEEEcCCCceEEeec-----CEEEEccCCccChhHh
Confidence 35699999999999986432 4567777642 455455553 8999999976555544
No 94
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=40.33 E-value=35 Score=34.29 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=35.8
Q ss_pred eEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 133 l~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
++|++++.|++|.-+++ .++ |.+.+.+|+..++.+ +.||+|.|..-...+
T Consensus 229 V~i~~~~~v~~i~~~~~----~v~-v~~~~~~G~~~~i~~-----D~Vi~a~G~~p~~~~ 278 (492)
T 3ic9_A 229 FYFDAKARVISTIEKED----AVE-VIYFDKSGQKTTESF-----QYVLAATGRKANVDK 278 (492)
T ss_dssp SEEETTCEEEEEEECSS----SEE-EEEECTTCCEEEEEE-----SEEEECSCCEESCSS
T ss_pred cEEEECCEEEEEEEcCC----EEE-EEEEeCCCceEEEEC-----CEEEEeeCCccCCCC
Confidence 99999999999976543 333 555434675556664 899999998655555
No 95
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=40.29 E-value=15 Score=34.79 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=32.5
Q ss_pred CeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 132 KITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 132 nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
+.+|.+++.|++|..+++ .++ |.+ .+|.. +.+ +.||+|..+-.+.+||
T Consensus 123 g~~i~~~~~V~~i~~~~~----~~~-v~~--~~g~~--~~a-----d~vV~A~p~~~~~~ll 170 (342)
T 3qj4_A 123 GAEVYFRHRVTQINLRDD----KWE-VSK--QTGSP--EQF-----DLIVLTMPVPEILQLQ 170 (342)
T ss_dssp TCEEESSCCEEEEEECSS----SEE-EEE--SSSCC--EEE-----SEEEECSCHHHHTTCB
T ss_pred CCEEEeCCEEEEEEEcCC----EEE-EEE--CCCCE--EEc-----CEEEECCCHHHHHHHh
Confidence 789999999999987653 222 333 35643 333 8999998765555544
No 96
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=39.93 E-value=51 Score=33.25 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=36.2
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+...+++|..+++|+.|..+++ .++ |.+.+.+| ..++.+ +-||.|.|+-.+
T Consensus 116 ~~~~gv~v~~~~~v~~i~~~~~----~v~-v~~~~~~g-~~~~~a-----~~vVgADG~~S~ 166 (500)
T 2qa1_A 116 ATGLGADIRRGHEVLSLTDDGA----GVT-VEVRGPEG-KHTLRA-----AYLVGCDGGRSS 166 (500)
T ss_dssp HHHTTCEEEETCEEEEEEEETT----EEE-EEEEETTE-EEEEEE-----SEEEECCCTTCH
T ss_pred HHHCCCEEECCcEEEEEEEcCC----eEE-EEEEcCCC-CEEEEe-----CEEEECCCcchH
Confidence 3335899999999999987754 444 66665344 455664 899999998543
No 97
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=39.41 E-value=17 Score=36.93 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=31.3
Q ss_pred ccCCCCeeeccCCceEe-ecccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 011442 430 VVSTEYKVLGIDRLRVV-DGSTYDESPGTNPQGTVLMMGRYMGVKILR 476 (485)
Q Consensus 430 VVD~~~rV~G~~nL~Vv-DaSv~P~~~~~np~~ti~alA~r~A~~i~~ 476 (485)
+||+++|+-+.+|+|++ |++..|..+.+. ..+.-|..+|+.|.+
T Consensus 354 ~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~---~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 354 AVNDFLQVKGSNNIFAIGDNAFAGLPPTAQ---VAHQEAEYLAKNFDK 398 (502)
T ss_dssp EBCTTSBBTTCSSEEECGGGEESSSCCCHH---HHHHHHHHHHHHHHH
T ss_pred eECCccccCCCCCEEEEEcccCCCCCCchH---HHHHHHHHHHHHHHH
Confidence 79999999999999977 777777554322 344556666666644
No 98
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=39.05 E-value=36 Score=32.84 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=33.1
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEE-EEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAV-GVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~-GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
++++|+.+++|++|..+++ .++ .|.+ .+|+ ++.+ +.||+|.|+-..
T Consensus 121 ~gv~i~~~~~v~~i~~~~~----~v~g~v~~--~~g~--~~~a-----d~vV~AdG~~s~ 167 (399)
T 2x3n_A 121 ATVEMLFETRIEAVQRDER----HAIDQVRL--NDGR--VLRP-----RVVVGADGIASY 167 (399)
T ss_dssp TTEEEECSCCEEEEEECTT----SCEEEEEE--TTSC--EEEE-----EEEEECCCTTCH
T ss_pred CCcEEEcCCEEEEEEEcCC----ceEEEEEE--CCCC--EEEC-----CEEEECCCCChH
Confidence 4899999999999987653 343 4554 3565 4554 899999997544
No 99
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=38.66 E-value=54 Score=33.02 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=35.7
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
+.+.+++|..+++|+.|..+++ .++ |.+.+.+| ..++.+ +-||.|.|+-.+
T Consensus 117 ~~~~gv~v~~~~~v~~i~~~~~----~v~-v~~~~~~g-~~~~~a-----~~vVgADG~~S~ 167 (499)
T 2qa2_A 117 ALGRGAELLRGHTVRALTDEGD----HVV-VEVEGPDG-PRSLTT-----RYVVGCDGGRST 167 (499)
T ss_dssp HHHTTCEEEESCEEEEEEECSS----CEE-EEEECSSC-EEEEEE-----EEEEECCCTTCH
T ss_pred HHhCCCEEEcCCEEEEEEEeCC----EEE-EEEEcCCC-cEEEEe-----CEEEEccCcccH
Confidence 3335899999999999987654 343 66654334 456664 899999998543
No 100
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=38.10 E-value=60 Score=32.44 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=40.8
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCC-CCeeEEEecCCCCceEEEecCCcchHHH--HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN-GNQHQAFLAGNPKSEVILSCGAIGTPQM--LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~-g~~~~v~a~~~a~keVILaAGai~TP~L--Ll~SGI 198 (485)
.+.+++|+++++|++|.-+++ ...|.+.+.+ |+..++.+ +.||+|.|..-...+ |..+|+
T Consensus 250 ~~~gV~v~~~~~v~~i~~~~~-----~~~v~~~~~~~g~~~~i~~-----D~Vi~a~G~~p~~~~l~l~~~g~ 312 (491)
T 3urh_A 250 TKQGIDFKLGAKVTGAVKSGD-----GAKVTFEPVKGGEATTLDA-----EVVLIATGRKPSTDGLGLAKAGV 312 (491)
T ss_dssp HHTTCEEECSEEEEEEEEETT-----EEEEEEEETTSCCCEEEEE-----SEEEECCCCEECCTTSCHHHHTC
T ss_pred HhCCCEEEECCeEEEEEEeCC-----EEEEEEEecCCCceEEEEc-----CEEEEeeCCccCCCccCchhcCc
Confidence 346899999999999976542 2346666433 55456664 899999997655444 455554
No 101
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=37.86 E-value=14 Score=37.42 Aligned_cols=57 Identities=7% Similarity=-0.027 Sum_probs=38.1
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
+...+++|+.+++|+.|..++++ ....+|.+.+. +|...++.+ +.||+|.|+-..++
T Consensus 176 ~~~~gv~v~~~~~v~~i~~~~~~--~~~~~v~~~~~~~g~~~~i~a-----d~VV~A~G~~S~~r 233 (497)
T 2bry_A 176 ALLLGVEIHWGVKFTGLQPPPRK--GSGWRAQLQPNPPAQLASYEF-----DVLISAAGGKFVPE 233 (497)
T ss_dssp HHHTTCEEEESCEEEEEECCCST--TCCBEEEEESCCCHHHHTCCB-----SEEEECCCTTCCCT
T ss_pred HHhCCCEEEeCCEEEEEEEecCC--CCEEEEEEEECCCCCEEEEEc-----CEEEECCCCCcccc
Confidence 33468999999999999875311 13456666533 453334443 99999999876654
No 102
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=36.29 E-value=30 Score=34.57 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=31.1
Q ss_pred CeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 132 KITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 132 nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
|++|++++.|++|..+++ . |.+...+|+ ++.+ +.||+|+|.-...+
T Consensus 270 ~~~i~~~~~V~~i~~~~~----~---v~v~~~~g~--~~~a-----d~vI~a~~~~~l~~ 315 (495)
T 2vvm_A 270 RLGYVFGCPVRSVVNERD----A---ARVTARDGR--EFVA-----KRVVCTIPLNVLST 315 (495)
T ss_dssp CEEEESSCCEEEEEECSS----S---EEEEETTCC--EEEE-----EEEEECCCGGGGGG
T ss_pred ceEEEeCCEEEEEEEcCC----E---EEEEECCCC--EEEc-----CEEEECCCHHHHhh
Confidence 499999999999986543 2 233334564 3444 89999999644443
No 103
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=36.20 E-value=24 Score=36.41 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=38.6
Q ss_pred cccCc-ccCCCCeeec-----cCCceEee---cccCC-CCCCCCchhHHHHHHHHHHHHHHHH
Q 011442 425 CHVGK-VVSTEYKVLG-----IDRLRVVD---GSTYD-ESPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 425 c~MG~-VVD~~~rV~G-----~~nL~VvD---aSv~P-~~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
..||| .||.++||.+ ++|||.+. ++++- .-+++|..+..+..+.++++.+.+.
T Consensus 505 ~t~GGl~id~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~~fGr~Ag~~aa~~ 567 (571)
T 1y0p_A 505 HTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKY 567 (571)
T ss_dssp EECCEEEBCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCeEECCCceEECCCCCCcCCcEeceEcCCCCcCCCCCchHhHHHHHHHHHHHHHHHHHH
Confidence 35777 4899999854 88999986 34542 2346778888888999988888654
No 104
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=35.93 E-value=28 Score=34.35 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=33.7
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCc
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAI 187 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai 187 (485)
..+.+|++++.|++|..+++ ++++|.. +|+ ++.+ +.||+|+|..
T Consensus 246 ~~G~~i~~~~~V~~I~~~~~----~v~~v~~---~g~--~~~a-----d~VV~a~~~~ 289 (433)
T 1d5t_A 246 IYGGTYMLNKPVDDIIMENG----KVVGVKS---EGE--VARC-----KQLICDPSYV 289 (433)
T ss_dssp HHTCCCBCSCCCCEEEEETT----EEEEEEE---TTE--EEEC-----SEEEECGGGC
T ss_pred HcCCEEECCCEEEEEEEeCC----EEEEEEE---CCe--EEEC-----CEEEECCCCC
Confidence 34788999999999988753 7888763 453 3443 8999999976
No 105
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=35.71 E-value=50 Score=33.21 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=41.5
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGVG 199 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGIG 199 (485)
....+++|++++.|++|.-+++ ++ .|.+ .+|+ ++.+ +.||+|+|..-...||..+|+-
T Consensus 236 l~~~GV~v~~~~~V~~i~~~~~----~~-~v~l--~dG~--~i~a-----D~Vv~a~G~~pn~~l~~~~gl~ 293 (493)
T 1m6i_A 236 VRREGVKVMPNAIVQSVGVSSG----KL-LIKL--KDGR--KVET-----DHIVAAVGLEPNVELAKTGGLE 293 (493)
T ss_dssp HHTTTCEEECSCCEEEEEEETT----EE-EEEE--TTSC--EEEE-----SEEEECCCEEECCTTHHHHTCC
T ss_pred HHhcCCEEEeCCEEEEEEecCC----eE-EEEE--CCCC--EEEC-----CEEEECCCCCccHHHHHHcCCc
Confidence 3456999999999999975432 33 4555 3564 3444 8999999988766777777763
No 106
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=35.64 E-value=41 Score=32.34 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=34.7
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcch
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGT 189 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~T 189 (485)
..+++|+.+++|++|..+++ ....|.+.+ +|+..++.+ +-||.|.|.-..
T Consensus 115 ~~g~~i~~~~~v~~i~~~~~----~~~~v~~~~-~g~~~~~~a-----~~vV~AdG~~S~ 164 (394)
T 1k0i_A 115 ACGATTVYQAAEVRLHDLQG----ERPYVTFER-DGERLRLDC-----DYIAGCDGFHGI 164 (394)
T ss_dssp HTTCEEESSCEEEEEECTTS----SSCEEEEEE-TTEEEEEEC-----SEEEECCCTTCS
T ss_pred hcCCeEEeceeEEEEEEecC----CceEEEEec-CCcEEEEEe-----CEEEECCCCCcH
Confidence 35899999999999976532 123466633 676555664 899999997543
No 107
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=35.22 E-value=27 Score=34.77 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=33.7
Q ss_pred eEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 133 l~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
.+|.+++.|++|..+++ . |.+...+| ++.+ +.||+|+++-...+||.
T Consensus 249 ~~i~~~~~V~~i~~~~~----~---~~v~~~~g---~~~a-----d~vV~a~p~~~~~~ll~ 295 (475)
T 3lov_A 249 SEIRLETPLLAISREDG----R---YRLKTDHG---PEYA-----DYVLLTIPHPQVVQLLP 295 (475)
T ss_dssp CEEESSCCCCEEEEETT----E---EEEECTTC---CEEE-----SEEEECSCHHHHHHHCT
T ss_pred CEEEcCCeeeEEEEeCC----E---EEEEECCC---eEEC-----CEEEECCCHHHHHHHcC
Confidence 68999999999987653 2 44443456 3444 89999999876666653
No 108
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=34.28 E-value=54 Score=34.37 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=33.9
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
+...+.+|++++.|++|+++++. ++++||.. .+|+. +.+ +.||..+..
T Consensus 388 ~~~~Gg~i~l~~~V~~I~~~~~~--g~v~gV~~--~~Ge~--i~A-----~~VVs~~~~ 435 (650)
T 1vg0_A 388 CAVFGGIYCLRHSVQCLVVDKES--RKCKAVID--QFGQR--IIS-----KHFIIEDSY 435 (650)
T ss_dssp HHHTTCEEESSCCEEEEEEETTT--CCEEEEEE--TTSCE--EEC-----SEEEEEGGG
T ss_pred HHHcCCEEEeCCEeeEEEEeCCC--CeEEEEEe--CCCCE--EEc-----CEEEEChhh
Confidence 34568899999999999997631 27999883 46754 443 777775553
No 109
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=33.56 E-value=51 Score=32.92 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=38.7
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCC-CCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN-GNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~-g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
.+.+++|++++.|++|.-+++ .. ..|.+.+.. |+..++.+ +.||+|.|..-...+|
T Consensus 238 ~~~Gv~i~~~~~v~~i~~~~~---~~-~~v~~~~~~~~~~~~~~~-----D~vi~a~G~~p~~~~l 294 (483)
T 3dgh_A 238 EERGIPFLRKTVPLSVEKQDD---GK-LLVKYKNVETGEESEDVY-----DTVLWAIGRKGLVDDL 294 (483)
T ss_dssp HHTTCCEEETEEEEEEEECTT---SC-EEEEEEETTTCCEEEEEE-----SEEEECSCEEECCGGG
T ss_pred HhCCCEEEeCCEEEEEEEcCC---Cc-EEEEEecCCCCceeEEEc-----CEEEECcccccCcCcC
Confidence 456899999999999976543 12 347776532 44556664 8999999976554444
No 110
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=33.21 E-value=16 Score=36.82 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=35.5
Q ss_pred eEEEccceEEEEEeecCCC-CCeEEEEEEEeCCCCe-eEEEecCCCCceEEEecCCcchHHHH
Q 011442 133 ITVLIRATVQKIVFDTSGK-RPKAVGVIFKDENGNQ-HQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 133 l~v~~~~~V~rI~~~~~~~-~~~a~GV~~~~~~g~~-~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
.+|.+++.|++|..++++. ......|.+.+.+|.. .++.+ +.||+++..-...+||
T Consensus 256 ~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~a-----d~VI~a~p~~~l~~ll 313 (504)
T 1sez_A 256 DELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESF-----DAVIMTAPLCDVKSMK 313 (504)
T ss_dssp TTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEE-----SEEEECSCHHHHHTSE
T ss_pred ceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEEC-----CEEEECCCHHHHHHHh
Confidence 5799999999999876420 0012667775434532 34444 8899998865555444
No 111
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=32.78 E-value=46 Score=34.02 Aligned_cols=43 Identities=12% Similarity=0.016 Sum_probs=32.2
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
++++|+.+ +|++|..+++ .++++|... +|. ++.+ +.||+|.|+
T Consensus 208 ~Gv~i~~~-~V~~i~~~~~---g~~~~v~~~--~G~--~i~a-----d~vI~A~G~ 250 (550)
T 2e4g_A 208 LGVRHVED-RVEHVQRDAN---GNIESVRTA--TGR--VFDA-----DLFVDCSGF 250 (550)
T ss_dssp SCCEEEEC-CEEEEEECTT---SCEEEEEET--TSC--EEEC-----SEEEECCGG
T ss_pred CCcEEEEC-eEeEEEEcCC---CCEEEEEEC--CCC--EEEC-----CEEEECCCC
Confidence 38999999 9999987654 366777763 453 3553 899999996
No 112
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=32.19 E-value=26 Score=34.77 Aligned_cols=50 Identities=16% Similarity=0.120 Sum_probs=34.4
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
..+.+|.+++.|++|..+++ .+..|.. ++. ++.+ +.||+|+++-...+||
T Consensus 246 ~~g~~i~~~~~V~~i~~~~~----~~~~v~~---~~~--~~~a-----d~vv~a~p~~~~~~ll 295 (477)
T 3nks_A 246 SRGVSVLRGQPVCGLSLQAE----GRWKVSL---RDS--SLEA-----DHVISAIPASVLSELL 295 (477)
T ss_dssp HTTCEEECSCCCCEEEECGG----GCEEEEC---SSC--EEEE-----SEEEECSCHHHHHHHS
T ss_pred hcCCEEEeCCEEEEEEEcCC----ceEEEEE---CCe--EEEc-----CEEEECCCHHHHHHhc
Confidence 35889999999999987654 3334432 333 3444 8999999876665553
No 113
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=32.09 E-value=35 Score=34.17 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=38.3
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH-HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM-LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L-Ll~SGI 198 (485)
.+.+++|+++++|++|.-+++ .+...|.+ .+|+ .++.+ +.||+|+|..-...| |..+|+
T Consensus 237 ~~~Gv~i~~~~~v~~i~~~~~---~~~~~v~~--~~G~-~~i~~-----D~vv~a~G~~p~~~l~l~~~gl 296 (479)
T 2hqm_A 237 VKEGINVHKLSKIVKVEKNVE---TDKLKIHM--NDSK-SIDDV-----DELIWTIGRKSHLGMGSENVGI 296 (479)
T ss_dssp HHHTCEEECSCCEEEEEECC----CCCEEEEE--TTSC-EEEEE-----SEEEECSCEEECCCSSGGGGTC
T ss_pred HhCCeEEEeCCEEEEEEEcCC---CcEEEEEE--CCCc-EEEEc-----CEEEECCCCCCccccChhhcCc
Confidence 446899999999999975432 22445655 3563 34554 899999997544444 455554
No 114
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=31.70 E-value=40 Score=33.14 Aligned_cols=47 Identities=21% Similarity=0.172 Sum_probs=32.8
Q ss_pred eEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 133 l~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
.+|.+++.|++|..+++ . |.+...+|++ +.+ +.||+|+.+-...+||
T Consensus 248 ~~i~~~~~V~~i~~~~~----~---~~v~~~~g~~--~~a-----d~vi~a~p~~~~~~l~ 294 (470)
T 3i6d_A 248 TKVYKGTKVTKLSHSGS----C---YSLELDNGVT--LDA-----DSVIVTAPHKAAAGML 294 (470)
T ss_dssp EEEECSCCEEEEEECSS----S---EEEEESSSCE--EEE-----SEEEECSCHHHHHHHT
T ss_pred CEEEeCCceEEEEEcCC----e---EEEEECCCCE--EEC-----CEEEECCCHHHHHHHc
Confidence 78999999999987653 2 3333346653 444 8999999876666654
No 115
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=31.61 E-value=77 Score=31.42 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=39.3
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCC--CCeeEEEecCCCCceEEEecCCcchHHH--HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN--GNQHQAFLAGNPKSEVILSCGAIGTPQM--LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~--g~~~~v~a~~~a~keVILaAGai~TP~L--Ll~SGI 198 (485)
...++++++++.|++|.-+++ . ..|.+.+ + |+..++.+ +.||+|.|..-...+ |..+|+
T Consensus 221 ~~~gV~i~~~~~v~~i~~~~~----~-~~v~~~~-~~~g~~~~i~~-----D~vv~a~G~~p~~~~l~l~~~g~ 283 (464)
T 2eq6_A 221 EKEGIRVRTKTKAVGYEKKKD----G-LHVRLEP-AEGGEGEEVVV-----DKVLVAVGRKPRTEGLGLEKAGV 283 (464)
T ss_dssp HHTTCEEECSEEEEEEEEETT----E-EEEEEEE-TTCCSCEEEEE-----SEEEECSCEEESCTTSSHHHHTC
T ss_pred HhcCCEEEcCCEEEEEEEeCC----E-EEEEEee-cCCCceeEEEc-----CEEEECCCcccCCCCCChhhcCc
Confidence 446899999999999975532 3 3455542 4 66445654 899999997655444 344454
No 116
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=31.40 E-value=40 Score=33.94 Aligned_cols=46 Identities=17% Similarity=0.076 Sum_probs=33.8
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
+.+.+++++.+ +|++|..+++ .++++|+.. +|. ++.+ +.||.|.|+
T Consensus 183 a~~~gv~~~~~-~v~~i~~~~~---~~~~~v~~~--~g~--~~~a-----d~vV~A~G~ 228 (511)
T 2weu_A 183 AIARGVRHVVD-DVQHVGQDER---GWISGVHTK--QHG--EISG-----DLFVDCTGF 228 (511)
T ss_dssp HHHTTCEEEEC-CEEEEEECTT---SCEEEEEES--SSC--EEEC-----SEEEECCGG
T ss_pred HHHCCCEEEEC-eEeEEEEcCC---CCEEEEEEC--CCC--EEEc-----CEEEECCCc
Confidence 34468999999 9999987554 366777763 454 4553 899999996
No 117
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=30.59 E-value=81 Score=31.85 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=35.1
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEE--EEEeCCCCeeEEEecCCCCceEEEecCCcc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGV--IFKDENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV--~~~~~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
+...+++|+.+++|+.|..+++ .++.+| .+.+.++ ..++.+ +-||.|.|+-.
T Consensus 130 a~~~gv~i~~~~~v~~i~~~~~---~~~~~v~v~~~~~~~-~~~i~a-----~~vV~AdG~~S 183 (535)
T 3ihg_A 130 ARKHGGAIRFGTRLLSFRQHDD---DAGAGVTARLAGPDG-EYDLRA-----GYLVGADGNRS 183 (535)
T ss_dssp HHHTTCEEESSCEEEEEEEECG---GGCSEEEEEEEETTE-EEEEEE-----EEEEECCCTTC
T ss_pred HHhCCCEEEeCCEEEEEEECCC---CccccEEEEEEcCCC-eEEEEe-----CEEEECCCCcc
Confidence 3334899999999999988754 233344 4444333 456664 89999999753
No 118
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=30.38 E-value=73 Score=31.64 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=29.2
Q ss_pred eEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 133 l~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
.+|.+++.|++|..+++ +++ |.+.+ ++...++.+ +.||+++..
T Consensus 252 ~~i~~~~~V~~i~~~~~----~v~-v~~~~-g~~~~~~~a-----d~vI~a~p~ 294 (489)
T 2jae_A 252 DNIVFGAEVTSMKNVSE----GVT-VEYTA-GGSKKSITA-----DYAICTIPP 294 (489)
T ss_dssp GGEETTCEEEEEEEETT----EEE-EEEEE-TTEEEEEEE-----SEEEECSCH
T ss_pred CeEEECCEEEEEEEcCC----eEE-EEEec-CCeEEEEEC-----CEEEECCCH
Confidence 56999999999987653 443 55543 233345554 899999864
No 119
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=29.75 E-value=43 Score=33.33 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=37.6
Q ss_pred eEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH-HHHcCC
Q 011442 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM-LKLSGV 198 (485)
Q Consensus 133 l~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L-Ll~SGI 198 (485)
++|++++.|++|.-++++ .++ |.+.+.+|+..++.+ +.||+|.|..-...| |..+|+
T Consensus 226 v~i~~~~~v~~i~~~~~~---~v~-v~~~~~~G~~~~i~~-----D~vi~a~G~~p~~~l~l~~~gl 283 (466)
T 3l8k_A 226 LNIKFNSPVTEVKKIKDD---EYE-VIYSTKDGSKKSIFT-----NSVVLAAGRRPVIPEGAREIGL 283 (466)
T ss_dssp CCEECSCCEEEEEEEETT---EEE-EEECCTTSCCEEEEE-----SCEEECCCEEECCCTTTGGGTC
T ss_pred EEEEECCEEEEEEEcCCC---cEE-EEEEecCCceEEEEc-----CEEEECcCCCcccccchhhcCc
Confidence 899999999999765411 332 555422566556664 899999997654444 455554
No 120
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=28.94 E-value=69 Score=35.37 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=42.9
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEe--C---CCCeeEEEecCCCCceEEEecCCcchHHHHHHcC
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD--E---NGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSG 197 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~--~---~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SG 197 (485)
..+++|++++.|++|.-+++ .++.+|.+.+ . +|+..++.+ +.||+|.|..-...||...|
T Consensus 328 ~~GV~v~~~~~v~~i~~~~~---~~v~~v~~~~~~~~~~~G~~~~i~~-----D~Vv~a~G~~P~~~l~~~~~ 392 (965)
T 2gag_A 328 ADGVQVISGSVVVDTEADEN---GELSAIVVAELDEARELGGTQRFEA-----DVLAVAGGFNPVVHLHSQRQ 392 (965)
T ss_dssp HTTCCEEETEEEEEEEECTT---SCEEEEEEEEECTTCCEEEEEEEEC-----SEEEEECCEEECCHHHHHTT
T ss_pred hCCeEEEeCCEeEEEeccCC---CCEEEEEEEeccccCCCCceEEEEc-----CEEEECCCcCcChHHHHhCC
Confidence 45899999999999975312 3788898875 2 243455653 89999999876667776554
No 121
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=28.24 E-value=38 Score=34.06 Aligned_cols=50 Identities=10% Similarity=0.168 Sum_probs=33.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
.+.+++|++++.|++|.-+++ + |.+...+|. ++.+ +.||+|+|..-...+
T Consensus 234 ~~~GV~i~~~~~V~~i~~~~~----~---v~v~~~~g~--~i~a-----D~Vv~a~G~~p~~~~ 283 (499)
T 1xdi_A 234 AERGVRLFKNARAASVTRTGA----G---VLVTMTDGR--TVEG-----SHALMTIGSVPNTSG 283 (499)
T ss_dssp HHTTCEEETTCCEEEEEECSS----S---EEEEETTSC--EEEE-----SEEEECCCEEECCSS
T ss_pred HHCCCEEEeCCEEEEEEEeCC----E---EEEEECCCc--EEEc-----CEEEECCCCCcCCCc
Confidence 456899999999999975432 2 233333554 3444 899999997655555
No 122
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=28.07 E-value=76 Score=31.66 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=37.5
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCC-CCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN-GNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~-g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
.+.+++|++++.|++|.-.++ ....|.+.+.+ |+..++.+ +.||+|.|..-...+
T Consensus 236 ~~~gv~~~~~~~v~~i~~~~~----~~~~v~~~~~~~g~~~~~~~-----D~vi~a~G~~p~~~~ 291 (488)
T 3dgz_A 236 ESHGTQFLKGCVPSHIKKLPT----NQLQVTWEDHASGKEDTGTF-----DTVLWAIGRVPETRT 291 (488)
T ss_dssp HHTTCEEEETEEEEEEEECTT----SCEEEEEEETTTTEEEEEEE-----SEEEECSCEEESCGG
T ss_pred HHCCCEEEeCCEEEEEEEcCC----CcEEEEEEeCCCCeeEEEEC-----CEEEEcccCCcccCc
Confidence 456899999999999975432 22346666533 55445554 899999997655554
No 123
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=28.06 E-value=97 Score=30.28 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=39.7
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
.+.++++++++.|++|. .+ +|.+.+.+|...++.+ +.||+++|.-. |.++..||.
T Consensus 211 ~~~GV~~~~~~~v~~v~--~~-------~~~~~~~~g~~~~i~~-----d~vi~~~G~~~-~~~~~~~~~ 265 (430)
T 3hyw_A 211 AERNIDWIANVAVKAIE--PD-------KVIYEDLNGNTHEVPA-----KFTMFMPSFQG-PEVVASAGD 265 (430)
T ss_dssp HHTTCEEECSCEEEEEC--SS-------EEEEECTTSCEEEEEC-----SEEEEECEEEC-CHHHHTTCT
T ss_pred HhCCeEEEeCceEEEEe--CC-------ceEEEeeCCCceEeec-----ceEEEeccCCC-chHHHhccc
Confidence 44699999999999983 32 3455555677777764 89999999654 467777764
No 124
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=27.24 E-value=45 Score=32.90 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=35.2
Q ss_pred CeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCC-eeEEEecCCCCceEEEecCCcchHHHH
Q 011442 132 KITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGN-QHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 132 nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~-~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
+.+|..+++|++|..+++ . .-|.+.+. +|. ..++.+ +.||+|.|+...|.+.
T Consensus 129 ~~~i~~~t~V~~v~~~~~----~-~~V~~~~~~~G~~~~~~~~-----d~VVvAtG~~s~p~~p 182 (447)
T 2gv8_A 129 LPFIKLATDVLDIEKKDG----S-WVVTYKGTKAGSPISKDIF-----DAVSICNGHYEVPYIP 182 (447)
T ss_dssp GGGEECSEEEEEEEEETT----E-EEEEEEESSTTCCEEEEEE-----SEEEECCCSSSSBCBC
T ss_pred hCeEEeCCEEEEEEeCCC----e-EEEEEeecCCCCeeEEEEe-----CEEEECCCCCCCCCCC
Confidence 567888999999976532 2 33555431 254 334554 8999999998888754
No 125
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=26.98 E-value=73 Score=29.15 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=32.2
Q ss_pred ccCCCCeeeccCCceEeec-ccCCCCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 011442 430 VVSTEYKVLGIDRLRVVDG-STYDESPGTNPQGTVLMMGRYMGVKILRQRLGK 481 (485)
Q Consensus 430 VVD~~~rV~G~~nL~VvDa-Sv~P~~~~~np~~ti~alA~r~A~~i~~~~~~~ 481 (485)
.||++++. .++|||++.- .-.| +........+.-|..+|..|.+.-.++
T Consensus 270 ~vd~~~~t-~~~~vya~GD~~~~~--~~~~~~~~A~~~g~~aa~~i~~~l~~~ 319 (323)
T 3f8d_A 270 KVDEWMRT-SVPGVFAAGDCTSAW--LGFRQVITAVAQGAVAATSAYRYVTEK 319 (323)
T ss_dssp CCCTTCBC-SSTTEEECSTTBSTT--TTCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCcee-cCCCEEEcceecCCC--CcccceeehhhHHHHHHHHHHHHHHHh
Confidence 78999997 8999999854 4444 223344555666777777776654443
No 126
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=26.56 E-value=46 Score=34.11 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=37.9
Q ss_pred cccCc-ccCCCCeee-----ccCCceEeec---ccCC-CCCCCCchhHHHHHHHHHHHHHHHH
Q 011442 425 CHVGK-VVSTEYKVL-----GIDRLRVVDG---STYD-ESPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 425 c~MG~-VVD~~~rV~-----G~~nL~VvDa---Sv~P-~~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
..||| .||.++||. -++|||.+.- +++- .-+++|-.+..+..+.++++.+.+.
T Consensus 500 ~t~GGl~vd~~~~vl~~~g~~I~GLyAaGe~~~g~~g~~~~~g~sl~~~~v~Gr~Ag~~aa~~ 562 (566)
T 1qo8_A 500 HTMGGVAINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKH 562 (566)
T ss_dssp EECCEECBCTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccEEECCCCeEECCCCCEeCCEEecccccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 45777 589999985 4789999864 4442 2245777778888888888887654
No 127
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=26.32 E-value=27 Score=28.11 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=18.2
Q ss_pred CCceeecCccccccCccCCCceee
Q 011442 208 NISVVLDNAHIGKGMADNPMNAVF 231 (485)
Q Consensus 208 GI~~v~dlp~VG~nl~dH~~~~~~ 231 (485)
|..+..=.|+.|.|||+|..+.+-
T Consensus 63 gk~VtAyIPG~GhnlqEhs~VLVr 86 (135)
T 2vqe_L 63 GYEVTAYIPGEGHNLQEHSVVLIR 86 (135)
T ss_dssp SCEEEEECCSSCCCCCTTCEEEEE
T ss_pred CCEEEEEcCCCCCccCcCCEEEEc
Confidence 345556679999999999876654
No 128
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=26.10 E-value=58 Score=32.35 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=35.4
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
.+.+++|++++.|++|.-+++ .+ .|.+.+.+| ..++.+ +.||+|.|..-...
T Consensus 232 ~~~Gv~v~~~~~v~~i~~~~~----~~-~v~~~~~~g-~~~~~~-----D~vi~a~G~~p~~~ 283 (476)
T 3lad_A 232 TKQGLKILLGARVTGTEVKNK----QV-TVKFVDAEG-EKSQAF-----DKLIVAVGRRPVTT 283 (476)
T ss_dssp HHTTEEEEETCEEEEEEECSS----CE-EEEEESSSE-EEEEEE-----SEEEECSCEEECCT
T ss_pred HhCCCEEEECCEEEEEEEcCC----EE-EEEEEeCCC-cEEEEC-----CEEEEeeCCcccCC
Confidence 446899999999999976543 22 366654334 345554 89999999654443
No 129
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=25.90 E-value=41 Score=33.99 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=37.2
Q ss_pred cccCc-ccCCCCeeec-----cCCceEeec---ccC-CCCCCCCchhHHHHHHHHHHHHHHH
Q 011442 425 CHVGK-VVSTEYKVLG-----IDRLRVVDG---STY-DESPGTNPQGTVLMMGRYMGVKILR 476 (485)
Q Consensus 425 c~MG~-VVD~~~rV~G-----~~nL~VvDa---Sv~-P~~~~~np~~ti~alA~r~A~~i~~ 476 (485)
+.||| .||.++||.+ ++|||.+.- +++ ..-+++|..+..+..+.++++++.+
T Consensus 447 ~t~GGl~~d~~~~Vl~~~g~~I~GLyAaGe~~gg~~g~~y~~G~sl~~~~~fGr~Ag~~aa~ 508 (510)
T 4at0_A 447 FTLGGLRTTVNSEVLHVSGEPIPGLFAAGRCTSGVCAGGYASGTSLGDGSFYGRRAGISAAK 508 (510)
T ss_dssp EECCEECBCTTCEEEBTTSSEEEEEEECGGGBCCSCSSSCCTTHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcCeeECCCCceECCCCCCcCCeeeceecccCCCcCCCCcHHhHHHHHHHHHHHHHHHHh
Confidence 45665 6678888765 679999863 565 3335677888888889888887643
No 130
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=25.83 E-value=89 Score=30.86 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=38.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH--HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM--LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L--Ll~SGI 198 (485)
.+.++++++++.|++|.-+++ . ..|.+. .+|...++.+ +.||+|.|..-...+ |..+|+
T Consensus 223 ~~~gv~i~~~~~v~~i~~~~~----~-~~v~~~-~~g~~~~~~~-----D~vv~a~G~~p~~~~l~~~~~gl 283 (464)
T 2a8x_A 223 KKLGVTILTATKVESIADGGS----Q-VTVTVT-KDGVAQELKA-----EKVLQAIGFAPNVEGYGLDKAGV 283 (464)
T ss_dssp HHHTCEEECSCEEEEEEECSS----C-EEEEEE-SSSCEEEEEE-----SEEEECSCEEECCSSSCHHHHTC
T ss_pred HHcCCEEEeCcEEEEEEEcCC----e-EEEEEE-cCCceEEEEc-----CEEEECCCCCccCCCCCchhcCC
Confidence 345899999999999875432 2 235554 2454455654 899999997655555 444554
No 131
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=25.73 E-value=54 Score=33.72 Aligned_cols=49 Identities=10% Similarity=-0.010 Sum_probs=34.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcc
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIG 188 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~ 188 (485)
...+++|+.+++|+.|..+++ .++ |.+.+.+|. .++.+ +-||.|.|+-.
T Consensus 159 ~~~gv~i~~~~~v~~l~~~~~----~v~-v~~~~~~G~-~~~~a-----~~vV~ADG~~S 207 (570)
T 3fmw_A 159 REAGAEIPRGHEVTRLRQDAE----AVE-VTVAGPSGP-YPVRA-----RYGVGCDGGRS 207 (570)
T ss_dssp HHHTEECCBSCEEEECCBCSS----CEE-EEEEETTEE-EEEEE-----SEEEECSCSSC
T ss_pred HhCCCEEEeCCEEEEEEEcCC----eEE-EEEEeCCCc-EEEEe-----CEEEEcCCCCc
Confidence 335899999999999987654 333 555444552 45664 89999999744
No 132
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=25.53 E-value=52 Score=33.07 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=38.6
Q ss_pred CCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 131 QKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 131 ~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
.+++|++++.|++|.-++ ++.+|.. .+|. ++.+ +.||+|+|..-...||..+|+
T Consensus 270 ~GV~v~~~~~v~~i~~~~-----~v~~v~~--~~g~--~i~a-----D~Vv~a~G~~p~~~l~~~~g~ 323 (493)
T 1y56_A 270 WGIDYVHIPNVKRVEGNE-----KVERVID--MNNH--EYKV-----DALIFADGRRPDINPITQAGG 323 (493)
T ss_dssp HTCEEEECSSEEEEECSS-----SCCEEEE--TTCC--EEEC-----SEEEECCCEEECCHHHHHTTC
T ss_pred CCcEEEeCCeeEEEecCC-----ceEEEEe--CCCe--EEEe-----CEEEECCCcCcCchHHHhcCC
Confidence 478999999999986331 4556654 3553 3443 899999998777777777765
No 133
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=25.18 E-value=62 Score=31.44 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=29.0
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
+..+ +|++++.|++|..+++ .++ |.+ .+|+ ++.+ +.||+|+|.
T Consensus 215 ~~~g-~i~~~~~V~~i~~~~~----~v~-v~~--~~g~--~~~a-----d~vi~a~~~ 257 (431)
T 3k7m_X 215 QEIP-EIRLQTVVTGIDQSGD----VVN-VTV--KDGH--AFQA-----HSVIVATPM 257 (431)
T ss_dssp TTCS-CEESSCCEEEEECSSS----SEE-EEE--TTSC--CEEE-----EEEEECSCG
T ss_pred hhCC-ceEeCCEEEEEEEcCC----eEE-EEE--CCCC--EEEe-----CEEEEecCc
Confidence 3345 9999999999986543 332 443 4564 3444 899999974
No 134
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=25.09 E-value=1e+02 Score=32.03 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=36.9
Q ss_pred CeEEEccceEEEEEeecCCCCCeEEEEEEEe----CCCCeeEEEecCCCCceEEEecCCcchH
Q 011442 132 KITVLIRATVQKIVFDTSGKRPKAVGVIFKD----ENGNQHQAFLAGNPKSEVILSCGAIGTP 190 (485)
Q Consensus 132 nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~----~~g~~~~v~a~~~a~keVILaAGai~TP 190 (485)
+++|..+++|+.|..++++. ...+.|.+.+ .+|...++++ +-||.|.|+-.+-
T Consensus 157 ~v~v~~~~~v~~l~~~~~~~-~~~v~v~~~~~~~~~~G~~~~i~a-----~~vVgADG~~S~v 213 (639)
T 2dkh_A 157 RLEPHYARRVLDVKVDHGAA-DYPVTVTLERCDAAHAGQIETVQA-----RYVVGCDGARSNV 213 (639)
T ss_dssp CCCCBCSEEEEEEEECTTCS-SCCEEEEEEECSGGGTTCEEEEEE-----EEEEECCCTTCHH
T ss_pred CcEEecCCEEEEEEECCCCC-cCCEEEEEEeccccCCCCeEEEEe-----CEEEECCCcchHH
Confidence 66999999999998865211 1234566664 2566667775 8999999985543
No 135
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=24.88 E-value=1e+02 Score=30.54 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=38.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHH--HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQM--LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~L--Ll~SGI 198 (485)
.+.+++|+++++|++|.-+++ ....|.+.+. .+...++.+ +.||+|.|..-...+ |..+|+
T Consensus 231 ~~~Gv~i~~~~~v~~i~~~~~----~~~~v~~~~~~~~~~~~i~~-----D~vv~a~G~~p~~~~l~l~~~g~ 294 (474)
T 1zmd_A 231 QKQGFKFKLNTKVTGATKKSD----GKIDVSIEAASGGKAEVITC-----DVLLVCIGRRPFTKNLGLEELGI 294 (474)
T ss_dssp HHTTCEEECSEEEEEEEECTT----SCEEEEEEETTSCCCEEEEE-----SEEEECSCEEECCTTSSHHHHTC
T ss_pred HHCCCEEEeCceEEEEEEcCC----ceEEEEEEecCCCCceEEEc-----CEEEECcCCCcCCCcCCchhcCC
Confidence 456899999999999975542 2234554321 222334554 899999997755554 445554
No 136
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=24.84 E-value=1.6e+02 Score=29.78 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=33.3
Q ss_pred EEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchH
Q 011442 135 VLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTP 190 (485)
Q Consensus 135 v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP 190 (485)
|..+++|+.|..+++ .++ |.+.+. +|+..++.+ +-||.|.|+-.+-
T Consensus 152 v~~~~~v~~~~~~~~----~v~-v~~~~~~~G~~~~i~a-----~~vVgADG~~S~v 198 (549)
T 2r0c_A 152 LRTRSRLDSFEQRDD----HVR-ATITDLRTGATRAVHA-----RYLVACDGASSPT 198 (549)
T ss_dssp EECSEEEEEEEECSS----CEE-EEEEETTTCCEEEEEE-----EEEEECCCTTCHH
T ss_pred cccCcEEEEEEEeCC----EEE-EEEEECCCCCEEEEEe-----CEEEECCCCCcHH
Confidence 999999999987654 344 566552 365566775 8999999986543
No 137
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=24.68 E-value=84 Score=30.93 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=33.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
...+++|+++++|++|..+++ . ..|++ .+|. ++.+ +.||+|+|..-...+
T Consensus 219 ~~~Gv~i~~~~~V~~i~~~~~----~-v~v~~--~~g~--~i~~-----D~vv~A~G~~p~~~~ 268 (455)
T 2yqu_A 219 KKQGLTIRTGVRVTAVVPEAK----G-ARVEL--EGGE--VLEA-----DRVLVAVGRRPYTEG 268 (455)
T ss_dssp HHHTCEEECSCCEEEEEEETT----E-EEEEE--TTSC--EEEE-----SEEEECSCEEECCTT
T ss_pred HHCCCEEEECCEEEEEEEeCC----E-EEEEE--CCCe--EEEc-----CEEEECcCCCcCCCC
Confidence 345899999999999976542 2 22333 3454 3443 899999997654444
No 138
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=24.67 E-value=85 Score=31.14 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=36.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQ 191 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~ 191 (485)
...+++|++++.|++|.-++++ ....|.+.+. +|...++.+ +.||+|.|..-...
T Consensus 235 ~~~gv~i~~~~~v~~i~~~~~~---~~~~v~~~~~~~g~~~~~~~-----D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 235 KKQGLDFKLSTKVISAKRNDDK---NVVEIVVEDTKTNKQENLEA-----EVLLVAVGRRPYIA 290 (478)
T ss_dssp HHTTCEEECSEEEEEEEEETTT---TEEEEEEEETTTTEEEEEEE-----SEEEECSCEEECCT
T ss_pred HHCCCEEEeCCEEEEEEEecCC---CeEEEEEEEcCCCCceEEEC-----CEEEECCCCCcCCC
Confidence 4468999999999999752121 3456666531 233345554 89999999765444
No 139
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=24.46 E-value=41 Score=33.43 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=37.8
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH--HHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM--LKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L--Ll~SGI 198 (485)
+.+.+++|++++.|++|.-+++ ....|++ ..+|+ +.+ +.||+|+|..-...+ |...||
T Consensus 221 l~~~Gv~i~~~~~v~~i~~~~~----~~~~v~~-~~~g~---i~a-----D~Vv~a~G~~p~~~~l~l~~~g~ 280 (463)
T 4dna_A 221 MEEKGIRILCEDIIQSVSADAD----GRRVATT-MKHGE---IVA-----DQVMLALGRMPNTNGLGLEAAGV 280 (463)
T ss_dssp HHHTTCEEECSCCEEEEEECTT----SCEEEEE-SSSCE---EEE-----SEEEECSCEEESCTTSSTGGGTC
T ss_pred HHHCCCEEECCCEEEEEEEcCC----CEEEEEE-cCCCe---EEe-----CEEEEeeCcccCCCCCCccccCc
Confidence 3456899999999999976543 2345552 23553 444 899999997655444 334444
No 140
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=24.44 E-value=96 Score=33.27 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=27.8
Q ss_pred CeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEec
Q 011442 132 KITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSC 184 (485)
Q Consensus 132 nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaA 184 (485)
+++|++++.|++|..+++ . |.+...+|. ++.+ +.||+|+
T Consensus 543 gl~I~l~t~V~~I~~~~~----~---v~V~~~~G~--~i~A-----d~VIvA~ 581 (776)
T 4gut_A 543 GLDIQLKSPVQCIDYSGD----E---VQVTTTDGT--GYSA-----QKVLVTV 581 (776)
T ss_dssp TSCEESSCCEEEEECSSS----S---EEEEETTCC--EEEE-----SEEEECC
T ss_pred CCcEEcCCeeEEEEEcCC----E---EEEEECCCc--EEEc-----CEEEECC
Confidence 678999999999987653 2 333334564 3444 8999998
No 141
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=24.44 E-value=71 Score=31.88 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=37.6
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH--HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM--LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L--Ll~SGI 198 (485)
.+.+++|++++.|++|..+++ ++ .|.+ .+|+ ++.+ +.||+|.|..-...+ |...||
T Consensus 243 ~~~Gv~i~~~~~V~~i~~~~~----~v-~v~~--~~g~--~i~a-----D~Vi~A~G~~p~~~~l~l~~~g~ 300 (484)
T 3o0h_A 243 VAKGISIIYEATVSQVQSTEN----CY-NVVL--TNGQ--TICA-----DRVMLATGRVPNTTGLGLERAGV 300 (484)
T ss_dssp HHHTCEEESSCCEEEEEECSS----SE-EEEE--TTSC--EEEE-----SEEEECCCEEECCTTCCHHHHTC
T ss_pred HHCCCEEEeCCEEEEEEeeCC----EE-EEEE--CCCc--EEEc-----CEEEEeeCCCcCCCCCChhhcCc
Confidence 345899999999999976543 33 4554 3564 3444 899999997655554 444554
No 142
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=24.22 E-value=54 Score=32.53 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=36.5
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeC-CCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
.+.+++|++++.|++|.-+++ . ..|.+.+. +|...++.+ +.||+|+|..-...+
T Consensus 229 ~~~gv~i~~~~~v~~i~~~~~----~-~~v~~~~~~~g~~~~~~~-----D~vv~a~G~~p~~~~ 283 (470)
T 1dxl_A 229 EKQGMKFKLKTKVVGVDTSGD----G-VKLTVEPSAGGEQTIIEA-----DVVLVSAGRTPFTSG 283 (470)
T ss_dssp HHSSCCEECSEEEEEEECSSS----S-EEEEEEESSSCCCEEEEE-----SEEECCCCEEECCTT
T ss_pred HHcCCEEEeCCEEEEEEEcCC----e-EEEEEEecCCCcceEEEC-----CEEEECCCCCcCCCC
Confidence 446899999999999975432 2 34555432 354445654 899999997755555
No 143
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=24.09 E-value=39 Score=34.53 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=37.1
Q ss_pred CCCCe--EEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHH
Q 011442 129 NPQKI--TVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLK 194 (485)
Q Consensus 129 ~~~nl--~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl 194 (485)
.+.++ +|..+++|+++.++++. ...-|.. .+|. ++.+ +.||+|.|+...|++.-
T Consensus 98 ~~~g~~~~i~~~~~V~~i~~~~~~---~~~~V~~--~~G~--~i~a-----d~lV~AtG~~s~p~~p~ 153 (540)
T 3gwf_A 98 DRFDLRRHFKFGTEVTSALYLDDE---NLWEVTT--DHGE--VYRA-----KYVVNAVGLLSAINFPN 153 (540)
T ss_dssp HHTTCGGGEEESCCEEEEEEETTT---TEEEEEE--TTSC--EEEE-----EEEEECCCSCCSBCCCC
T ss_pred HHcCCcceeEeccEEEEEEEeCCC---CEEEEEE--cCCC--EEEe-----CEEEECCcccccCCCCC
Confidence 33466 89999999999988642 2333443 3565 3443 89999999987776543
No 144
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=23.62 E-value=62 Score=32.41 Aligned_cols=58 Identities=26% Similarity=0.377 Sum_probs=37.4
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH-H-HHHcCC
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ-M-LKLSGV 198 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~-L-Ll~SGI 198 (485)
+.+.+++|++++.|++|.-+++ ....|++ .+|+ ++.+ +.||+|+|..-... | |..+||
T Consensus 241 l~~~GV~i~~~~~v~~i~~~~~----~~~~v~~--~~G~--~i~~-----D~vv~a~G~~p~~~~L~l~~~gl 300 (490)
T 1fec_A 241 LRANGINVRTHENPAKVTKNAD----GTRHVVF--ESGA--EADY-----DVVMLAIGRVPRSQTLQLEKAGV 300 (490)
T ss_dssp HHHTTEEEEETCCEEEEEECTT----SCEEEEE--TTSC--EEEE-----SEEEECSCEEESCTTSCGGGGTC
T ss_pred HHhCCCEEEeCCEEEEEEEcCC----CEEEEEE--CCCc--EEEc-----CEEEEccCCCcCccccCchhcCc
Confidence 3456999999999999975542 2234554 3564 4444 89999999754433 3 344444
No 145
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=23.59 E-value=66 Score=32.28 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=37.3
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH-H-HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ-M-LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~-L-Ll~SGI 198 (485)
.+.+++|++++.|++|.-+++ ....|++ .+|+ ++.+ +.||+|+|..-... | |..+||
T Consensus 246 ~~~GV~i~~~~~v~~i~~~~~----~~~~v~~--~~G~--~i~~-----D~vv~a~G~~p~~~~L~l~~~gl 304 (495)
T 2wpf_A 246 TANGIEIMTNENPAKVSLNTD----GSKHVTF--ESGK--TLDV-----DVVMMAIGRIPRTNDLQLGNVGV 304 (495)
T ss_dssp HHTTCEEEESCCEEEEEECTT----SCEEEEE--TTSC--EEEE-----SEEEECSCEEECCGGGTGGGTTC
T ss_pred HhCCCEEEeCCEEEEEEEcCC----ceEEEEE--CCCc--EEEc-----CEEEECCCCcccccccchhhcCc
Confidence 456899999999999975432 2345555 3564 4444 89999999764443 3 334444
No 146
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=23.37 E-value=50 Score=33.96 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=38.4
Q ss_pred cccCc-ccCCCCeee------ccCCceEeec---ccCC-CCCCCCchhHHHHHHHHHHHHHHHH
Q 011442 425 CHVGK-VVSTEYKVL------GIDRLRVVDG---STYD-ESPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 425 c~MG~-VVD~~~rV~------G~~nL~VvDa---Sv~P-~~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
..||| .||.++||. -++|||.+.- +++- .-+++|..+..+..+.++++.+.+.
T Consensus 505 ~t~GGl~id~~~~Vl~~~g~~~I~GLyAaGe~~~g~~g~~~l~g~sl~~~~vfGr~Ag~~aa~~ 568 (572)
T 1d4d_A 505 HTMGGLVIDTKAEVKSEKTAKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKF 568 (572)
T ss_dssp EECCEEEBCTTCEEEBSSSSSEEEEEEECSTTEESTTTTSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred eeCCCeEECCCCeEEcCCCCcccCCeeECeecccCCCCCCCCchHhHHHHHHHHHHHHHHHHHH
Confidence 45777 489999885 3778999863 4442 2246778888889999999888654
No 147
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=23.22 E-value=69 Score=31.66 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=32.6
Q ss_pred eEEEccceEEEEEeecCCCCCeEEEEEEEe-CCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 133 ITVLIRATVQKIVFDTSGKRPKAVGVIFKD-ENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 133 l~v~~~~~V~rI~~~~~~~~~~a~GV~~~~-~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
.+|++++.|++|..+++ + ..|.+.+ .+|+ ++.+ +.||+|+++-...+||
T Consensus 250 ~~i~~~~~V~~i~~~~~----~-~~v~~~~~~~g~--~~~a-----d~vV~a~~~~~~~~ll 299 (478)
T 2ivd_A 250 DAAHVGARVEGLAREDG----G-WRLIIEEHGRRA--ELSV-----AQVVLAAPAHATAKLL 299 (478)
T ss_dssp GGEESSEEEEEEECC------C-CEEEEEETTEEE--EEEC-----SEEEECSCHHHHHHHH
T ss_pred hhEEcCCEEEEEEecCC----e-EEEEEeecCCCc--eEEc-----CEEEECCCHHHHHHHh
Confidence 48999999999987643 2 3555532 2332 3443 8999999876666665
No 148
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=23.05 E-value=1.3e+02 Score=33.52 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=41.0
Q ss_pred CCCeEEEccceEEEEEeecCCCCCeEEEEEEEe----CCCC-------eeEEEecCCCCceEEEecCCc-chHHHHHH-c
Q 011442 130 PQKITVLIRATVQKIVFDTSGKRPKAVGVIFKD----ENGN-------QHQAFLAGNPKSEVILSCGAI-GTPQMLKL-S 196 (485)
Q Consensus 130 ~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~----~~g~-------~~~v~a~~~a~keVILaAGai-~TP~LLl~-S 196 (485)
..++++++++.+.+|..++ .++++|++.+ .+|. ..++.+ +.||+|.|.. .++.|+.. +
T Consensus 382 ~~Gv~~~~~~~~~~i~~~~----g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~a-----D~Vi~A~G~~~~~~~l~~~~~ 452 (1025)
T 1gte_A 382 EEKCEFLPFLSPRKVIVKG----GRIVAVQFVRTEQDETGKWNEDEDQIVHLKA-----DVVISAFGSVLRDPKVKEALS 452 (1025)
T ss_dssp HTTCEEECSEEEEEEEEET----TEEEEEEEEEEEECTTSCEEEEEEEEEEEEC-----SEEEECSCEECCCHHHHHHTT
T ss_pred HcCCEEEeCCCceEEEccC----CeEEEEEEEEeEEcCCCCcccCCCceEEEEC-----CEEEECCCCCCCchhhhhccc
Confidence 4689999999999997643 3788888752 1332 234443 8999999985 45566554 4
Q ss_pred CC
Q 011442 197 GV 198 (485)
Q Consensus 197 GI 198 (485)
||
T Consensus 453 gl 454 (1025)
T 1gte_A 453 PI 454 (1025)
T ss_dssp TS
T ss_pred Cc
Confidence 65
No 149
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=22.84 E-value=74 Score=31.69 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=38.0
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
.+.+++|++++.|++|.-+ .++.+|.. ++. ++.+ +.||+|+|..-.+.+|..+|+
T Consensus 238 ~~~Gv~i~~~~~v~~i~~~-----~~v~~v~~---~~~--~i~~-----D~vi~a~G~~p~~~~l~~~g~ 292 (480)
T 3cgb_A 238 DKHHIEILTNENVKAFKGN-----ERVEAVET---DKG--TYKA-----DLVLVSVGVKPNTDFLEGTNI 292 (480)
T ss_dssp HHTTCEEECSCCEEEEEES-----SBEEEEEE---TTE--EEEC-----SEEEECSCEEESCGGGTTSCC
T ss_pred HHcCcEEEcCCEEEEEEcC-----CcEEEEEE---CCC--EEEc-----CEEEECcCCCcChHHHHhCCc
Confidence 4568999999999998643 14555554 232 4543 899999998766566665554
No 150
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=22.68 E-value=1.2e+02 Score=30.16 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=38.4
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCC-CCe--eEEEecCCCCceEEEecCCcchHH-H-HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN-GNQ--HQAFLAGNPKSEVILSCGAIGTPQ-M-LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~-g~~--~~v~a~~~a~keVILaAGai~TP~-L-Ll~SGI 198 (485)
.+.+++|++++.|++|.-+++ .....|.+.+.+ |.. .++.+ +.||+|.|..-... | |...|+
T Consensus 239 ~~~gv~i~~~~~v~~i~~~~~---~~~~~v~~~~~~~g~~~g~~~~~-----D~vi~a~G~~p~~~~l~l~~~g~ 305 (478)
T 3dk9_A 239 ENAGVEVLKFSQVKEVKKTLS---GLEVSMVTAVPGRLPVMTMIPDV-----DCLLWAIGRVPNTKDLSLNKLGI 305 (478)
T ss_dssp HHTTCEEETTEEEEEEEECSS---SEEEEEEECCTTSCCEEEEEEEE-----SEEEECSCEEESCTTSCGGGGTC
T ss_pred HHCCCEEEeCCEEEEEEEcCC---CcEEEEEEccCCCCcccceEEEc-----CEEEEeeccccCCCCCCchhcCC
Confidence 446899999999999975443 223345554322 332 45554 89999999654443 3 444444
No 151
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=22.48 E-value=79 Score=31.28 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=26.8
Q ss_pred cCCceEeecccCCCCCCCCchhHHHHHHHHHHHHHHHHhhh
Q 011442 440 IDRLRVVDGSTYDESPGTNPQGTVLMMGRYMGVKILRQRLG 480 (485)
Q Consensus 440 ~~nL~VvDaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~~ 480 (485)
+.||+.+..++.|..++ .+--++.=|+|+|+.|++...+
T Consensus 422 ~~~l~fAG~~t~~~~~g--~v~GA~~SG~~aA~~i~~~l~~ 460 (472)
T 1b37_A 422 VGRVYFTGEHTSEHYNG--YVHGAYLSGIDSAEILINCAQK 460 (472)
T ss_dssp BTTEEECSGGGCTTTTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeecccCCCCCC--chhHHHHHHHHHHHHHHHHHHh
Confidence 46999999999874332 2333445688999999876543
No 152
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=22.48 E-value=1.1e+02 Score=30.20 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=37.2
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH-H-HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ-M-LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~-L-Ll~SGI 198 (485)
.+.++++++++.|++|.-+++ . ..|.+ .+|+. ++.+ +.||+|.|..-... | |..+|+
T Consensus 218 ~~~gv~i~~~~~v~~i~~~~~----~-~~v~~--~~G~~-~i~~-----D~vv~a~G~~p~~~~l~~~~~g~ 276 (463)
T 2r9z_A 218 HAQGIETHLEFAVAALERDAQ----G-TTLVA--QDGTR-LEGF-----DSVIWAVGRAPNTRDLGLEAAGI 276 (463)
T ss_dssp HHTTCEEESSCCEEEEEEETT----E-EEEEE--TTCCE-EEEE-----SEEEECSCEEESCTTSCHHHHTC
T ss_pred HHCCCEEEeCCEEEEEEEeCC----e-EEEEE--eCCcE-EEEc-----CEEEECCCCCcCCCCCCchhcCC
Confidence 446899999999999975542 2 34444 36653 4554 89999999754333 3 444554
No 153
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=22.25 E-value=81 Score=31.73 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=37.1
Q ss_pred hhhh-cCCCCeEEEccceEEEEEeecCCCCC---eEEEEEEEeC-CCCeeEEEecCCCCceEEEecCC
Q 011442 124 LLAS-ANPQKITVLIRATVQKIVFDTSGKRP---KAVGVIFKDE-NGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 124 ~l~~-~~~~nl~v~~~~~V~rI~~~~~~~~~---~a~GV~~~~~-~g~~~~v~a~~~a~keVILaAGa 186 (485)
||.. +.+=+..|..+++|++|..+..+... ...-|+..+. .|...++.+ +.||+|.|.
T Consensus 150 Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~a-----r~vVlatG~ 212 (501)
T 4b63_A 150 YMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRT-----RKVVIAIGG 212 (501)
T ss_dssp HHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEE-----EEEEECCCC
T ss_pred HHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEe-----CEEEECcCC
Confidence 6653 33434679999999999987643211 2334555543 355666664 999999994
No 154
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=22.09 E-value=64 Score=32.71 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=33.3
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCc
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAI 187 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai 187 (485)
+...+++++.+ +|+.|..+++ ..+++|... +|. ++. .+.||+|.|+-
T Consensus 175 a~~~gv~~~~~-~v~~i~~~~~---g~~~~v~~~--~g~--~i~-----ad~vV~A~G~~ 221 (538)
T 2aqj_A 175 AVERGVNRVVD-EVVDVRLNNR---GYISNLLTK--EGR--TLE-----ADLFIDCSGMR 221 (538)
T ss_dssp HHHTTCEEEEC-CEEEEEECTT---SCEEEEEET--TSC--EEC-----CSEEEECCGGG
T ss_pred HHHCCCEEEEe-eEeEEEEcCC---CcEEEEEEC--CCc--EEE-----eCEEEECCCCc
Confidence 33468999999 8999987654 356677663 453 344 39999999963
No 155
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=21.83 E-value=66 Score=32.88 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=0.0
Q ss_pred hhhhcCCCCeEEEc--cceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecC
Q 011442 124 LLASANPQKITVLI--RATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCG 185 (485)
Q Consensus 124 ~l~~~~~~nl~v~~--~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAG 185 (485)
|++...++|++|++ +..|++| ...||... +| .+.+ +.||+|+|
T Consensus 344 y~~al~~~nV~lv~~~~~~I~~i---------t~~gv~~~--dG-~~~~-------D~IV~ATG 388 (545)
T 3uox_A 344 YYETYNRDNVHLVDIREAPIQEV---------TPEGIKTA--DA-AYDL-------DVIIYATG 388 (545)
T ss_dssp HHHHTTSTTEEEEETTTSCEEEE---------ETTEEEES--SC-EEEC-------SEEEECCC
T ss_pred HHHHhcCCCEEEEecCCCCceEE---------ccCeEEeC--CC-eeec-------CEEEECCc
No 156
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=21.69 E-value=69 Score=33.39 Aligned_cols=53 Identities=17% Similarity=0.230 Sum_probs=39.5
Q ss_pred cccCc-ccCCCCeeec--------cCCceEeec----ccCC-CCCCCCchhHHHHHHHHHHHHHHHH
Q 011442 425 CHVGK-VVSTEYKVLG--------IDRLRVVDG----STYD-ESPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 425 c~MG~-VVD~~~rV~G--------~~nL~VvDa----Sv~P-~~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
..||| .||.++||.. ++|||.+.- |+.- .-+++|-.+-.+..+.++++.+.+.
T Consensus 365 ~tmGGi~~d~~~~Vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~ 431 (621)
T 2h88_A 365 YNMGGIPTNYKGQVITHVNGEDKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALTIAET 431 (621)
T ss_dssp EESCBEEBCTTSEEEEEETTEEEEEEEEEECGGGEECSSSTTSCCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcEeECCCCeEeecccCCCcccCceEEccccccccccCCCCCchHhHHHHHHHHHHHHHHHHHh
Confidence 35676 6899999854 899999864 3432 2246888888899999998888654
No 157
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=21.61 E-value=1.2e+02 Score=28.42 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=36.6
Q ss_pred CC-CeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHcCC
Q 011442 130 PQ-KITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLSGV 198 (485)
Q Consensus 130 ~~-nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~SGI 198 (485)
.. |++|++++.|.+|.-+++ ...|++ .+|+.. . +.+.||+|.|..-+..+|..+++
T Consensus 226 ~~g~v~~~~~~~v~~i~~~~~-----~~~v~~--~~g~~~--~----~~d~vi~a~G~~~~~~~~~~~~~ 282 (369)
T 3d1c_A 226 QGARIEMNVHYTVKDIDFNNG-----QYHISF--DSGQSV--H----TPHEPILATGFDATKNPIVQQLF 282 (369)
T ss_dssp TTCCEEEECSCCEEEEEEETT-----EEEEEE--SSSCCE--E----ESSCCEECCCBCGGGSHHHHHHS
T ss_pred hCCcEEEecCcEEEEEEecCC-----ceEEEe--cCCeEe--c----cCCceEEeeccCCccchhhhhhc
Confidence 34 599999999999865432 234555 356432 2 12789999998776656665544
No 158
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=21.45 E-value=92 Score=29.26 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=31.3
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTP 190 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP 190 (485)
.+.+++++.++.|++|..+++ . +.+...+| ++.+ +.||||+|+...|
T Consensus 99 ~~~gv~i~~~~~v~~i~~~~~----~---~~v~~~~g---~~~~-----d~vVlAtG~~~~p 145 (369)
T 3d1c_A 99 NHYELNIFENTVVTNISADDA----Y---YTIATTTE---TYHA-----DYIFVATGDYNFP 145 (369)
T ss_dssp HHTTCEEECSCCEEEEEECSS----S---EEEEESSC---CEEE-----EEEEECCCSTTSB
T ss_pred HHcCCeEEeCCEEEEEEECCC----e---EEEEeCCC---EEEe-----CEEEECCCCCCcc
Confidence 445899999999999986542 1 22222344 2443 8999999986544
No 159
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=21.23 E-value=1e+02 Score=30.56 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=37.9
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCC--CCeeEEEecCCCCceEEEecCCcchHHHH--HHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDEN--GNQHQAFLAGNPKSEVILSCGAIGTPQML--KLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~--g~~~~v~a~~~a~keVILaAGai~TP~LL--l~SGI 198 (485)
.+.+++|+++++|++|.-+++ ...|.+.+.+ |+. +.+ +.||+|.|..-...+| ..+|+
T Consensus 237 ~~~gV~i~~~~~v~~i~~~~~-----~~~v~~~~~~~~g~~--~~~-----D~vv~a~G~~p~~~~l~~~~~gl 298 (482)
T 1ojt_A 237 EYRFDNIMVNTKTVAVEPKED-----GVYVTFEGANAPKEP--QRY-----DAVLVAAGRAPNGKLISAEKAGV 298 (482)
T ss_dssp GGGEEEEECSCEEEEEEEETT-----EEEEEEESSSCCSSC--EEE-----SCEEECCCEEECGGGTTGGGTTC
T ss_pred HhcCCEEEECCEEEEEEEcCC-----eEEEEEeccCCCceE--EEc-----CEEEECcCCCcCCCCCChhhcCc
Confidence 456899999999999975432 2456665311 332 333 8999999987655553 44444
No 160
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=20.99 E-value=1.1e+02 Score=30.14 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=35.7
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
.+.+++|+++++|++|.-+++ . ..|.+.+ +|...++.+ +.||+|.|..-...+
T Consensus 222 ~~~gv~i~~~~~v~~i~~~~~----~-~~v~~~~-~g~~~~~~~-----D~vv~a~G~~p~~~~ 274 (455)
T 1ebd_A 222 KKKGVEVVTNALAKGAEERED----G-VTVTYEA-NGETKTIDA-----DYVLVTVGRRPNTDE 274 (455)
T ss_dssp HHTTCEEEESEEEEEEEEETT----E-EEEEEEE-TTEEEEEEE-----SEEEECSCEEESCSS
T ss_pred HHCCCEEEeCCEEEEEEEeCC----e-EEEEEEe-CCceeEEEc-----CEEEECcCCCcccCc
Confidence 446899999999999975432 2 3355542 343445554 899999997655444
No 161
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=20.94 E-value=82 Score=33.08 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=36.7
Q ss_pred ccCc-ccCCCCeeeccCCceEeecc----cCC-CCCCCCchhHHHHHHHHHHHHHHHH
Q 011442 426 HVGK-VVSTEYKVLGIDRLRVVDGS----TYD-ESPGTNPQGTVLMMGRYMGVKILRQ 477 (485)
Q Consensus 426 ~MG~-VVD~~~rV~G~~nL~VvDaS----v~P-~~~~~np~~ti~alA~r~A~~i~~~ 477 (485)
.||| .||.+++| -++|||.+.-. +.- .-.++|..+..+..+.++++.+.+.
T Consensus 371 t~GGi~vd~~~~v-~IpGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~ 427 (660)
T 2bs2_A 371 SMGGIRTDYRGEA-KLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEH 427 (660)
T ss_dssp ECCEEECCTTSBC-SSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEECCCCce-ecCCEEeccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 5676 68999999 99999998752 222 1235677777788888888776543
No 162
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=20.79 E-value=1.4e+02 Score=30.16 Aligned_cols=62 Identities=11% Similarity=0.231 Sum_probs=40.0
Q ss_pred cCCCCeEEEccceEEEEEeecCC---------------CCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSG---------------KRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQM 192 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~---------------~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~L 192 (485)
+.+.++++++++.|++|.-+... ...+++ |.+ .+|+ ++.+ +.||+|.|..-.+.+
T Consensus 202 l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~--~~g~--~i~~-----D~vi~a~G~~p~~~l 271 (565)
T 3ntd_A 202 IRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS-LTL--SNGE--LLET-----DLLIMAIGVRPETQL 271 (565)
T ss_dssp HHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEE-EEE--TTSC--EEEE-----SEEEECSCEEECCHH
T ss_pred HHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEE-EEE--cCCC--EEEc-----CEEEECcCCccchHH
Confidence 34569999999999999763100 001222 333 3554 3444 899999998776667
Q ss_pred HHHcCCC
Q 011442 193 LKLSGVG 199 (485)
Q Consensus 193 Ll~SGIG 199 (485)
|..+|+-
T Consensus 272 ~~~~g~~ 278 (565)
T 3ntd_A 272 ARDAGLA 278 (565)
T ss_dssp HHHHTCC
T ss_pred HHhCCcc
Confidence 7766653
No 163
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=20.71 E-value=68 Score=32.72 Aligned_cols=45 Identities=18% Similarity=0.401 Sum_probs=32.3
Q ss_pred hhhhcCCCCeEEEc--cceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCC
Q 011442 124 LLASANPQKITVLI--RATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGA 186 (485)
Q Consensus 124 ~l~~~~~~nl~v~~--~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGa 186 (485)
|++...++|++|++ ...+++|. + .||.. .+|+.+. + +.||+|.|-
T Consensus 336 y~~~l~~~nV~lv~~~~~~I~~it--~-------~gv~~--~dG~~~~--~-----DvIV~ATGf 382 (540)
T 3gwf_A 336 YYEVYNRPNVEAVAIKENPIREVT--A-------KGVVT--EDGVLHE--L-----DVLVFATGF 382 (540)
T ss_dssp TGGGGGSTTEEEEETTTSCEEEEC--S-------SEEEE--TTCCEEE--C-----SEEEECCCB
T ss_pred HHHHhcCCCEEEEeCCCCCccEEe--c-------CeEEc--CCCCEEE--C-----CEEEECCcc
Confidence 77777889999996 77888873 2 25655 3676443 2 889999995
No 164
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=20.65 E-value=46 Score=34.09 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=37.4
Q ss_pred CCCe--EEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHHHHc
Q 011442 130 PQKI--TVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQMLKLS 196 (485)
Q Consensus 130 ~~nl--~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LLl~S 196 (485)
+.++ +|..+++|+++.++++. ...-|.. .+|.+ +.+ +.||+|.|....|++.-..
T Consensus 111 ~~g~~~~i~~~~~V~~i~~~~~~---~~w~V~~--~~G~~--i~a-----d~lV~AtG~~s~p~~p~ip 167 (549)
T 4ap3_A 111 RFDLRRDIRFDTRVTSAVLDEEG---LRWTVRT--DRGDE--VSA-----RFLVVAAGPLSNANTPAFD 167 (549)
T ss_dssp HTTCGGGEECSCCEEEEEEETTT---TEEEEEE--TTCCE--EEE-----EEEEECCCSEEECCCCCCT
T ss_pred HcCCCccEEECCEEEEEEEcCCC---CEEEEEE--CCCCE--EEe-----CEEEECcCCCCCCCCCCCC
Confidence 3455 78899999999988652 2333443 35653 443 8999999988777755433
No 165
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=20.37 E-value=85 Score=30.93 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=37.3
Q ss_pred CCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHH-H-HHHcCC
Q 011442 129 NPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQ-M-LKLSGV 198 (485)
Q Consensus 129 ~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~-L-Ll~SGI 198 (485)
...++++++++.|++|.-+++ ....|.+ .+|+ ++.+ +.||+|+|.--... | |..+|+
T Consensus 219 ~~~Gv~i~~~~~v~~i~~~~~----~~~~v~~--~~g~--~i~~-----D~vv~a~G~~p~~~~l~~~~~gl 277 (450)
T 1ges_A 219 NAEGPQLHTNAIPKAVVKNTD----GSLTLEL--EDGR--SETV-----DCLIWAIGREPANDNINLEAAGV 277 (450)
T ss_dssp HHHSCEEECSCCEEEEEECTT----SCEEEEE--TTSC--EEEE-----SEEEECSCEEESCTTSCHHHHTC
T ss_pred HHCCCEEEeCCEEEEEEEeCC----cEEEEEE--CCCc--EEEc-----CEEEECCCCCcCCCCCCchhcCc
Confidence 446899999999999975432 2234554 3564 3444 89999999754443 3 455555
No 166
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=20.01 E-value=83 Score=30.94 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=36.5
Q ss_pred cCCCCeEEEccceEEEEEeecCCCCCeEEEEEEEeCCCCeeEEEecCCCCceEEEecCCcchHHHH
Q 011442 128 ANPQKITVLIRATVQKIVFDTSGKRPKAVGVIFKDENGNQHQAFLAGNPKSEVILSCGAIGTPQML 193 (485)
Q Consensus 128 ~~~~nl~v~~~~~V~rI~~~~~~~~~~a~GV~~~~~~g~~~~v~a~~~a~keVILaAGai~TP~LL 193 (485)
+.+.+++|++++.|++|.-++ .++++|.. +|. ++.+ +.||+|.|..-+..+|
T Consensus 201 l~~~Gv~i~~~~~v~~i~~~~----~~v~~v~~---~g~--~i~~-----D~vv~a~G~~p~~~ll 252 (452)
T 2cdu_A 201 YEAHGVNLVLGSKVAAFEEVD----DEIITKTL---DGK--EIKS-----DIAILCIGFRPNTELL 252 (452)
T ss_dssp HHHTTCEEEESSCEEEEEEET----TEEEEEET---TSC--EEEE-----SEEEECCCEEECCGGG
T ss_pred HHHCCCEEEcCCeeEEEEcCC----CeEEEEEe---CCC--EEEC-----CEEEECcCCCCCHHHH
Confidence 345699999999999997433 25655543 453 3444 8999999977665554
Done!