BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011444
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 118/420 (28%), Positives = 206/420 (49%), Gaps = 23/420 (5%)
Query: 2 FAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRM 61
F +E + +AR FA L + + T T T K IE+ +++PW + LE R
Sbjct: 353 FPDERAMDDARKFAEPYLREALATKIS-----TNTKLFKEIEYVVEYPWHMSIPRLEARS 407
Query: 62 WIEEKDMNALWMGKASFHRLSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNLS 121
+I+ D N +W K + +R+ N K ++LA ++ Q +++ EL+ L RW +++ ++
Sbjct: 408 YIDSYDDNYVWQRK-TLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA 466
Query: 122 DMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSAILITVADDFFDMEGSLNELKSL 181
D+ F R + YF++A P S R+ K L + DD D+ +L+ELKS
Sbjct: 467 DINFTRHRVAEVYFSSATF----EPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSF 522
Query: 182 ADAVKRWDGKGL---SGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFASW 238
+ VKRWD L +T F L+ E+ ++ QGRD+ ++ W F +
Sbjct: 523 TEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCY 582
Query: 239 LTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDT-VTKL 297
+ E W ++G P+ EEYL+T IS+ L + + + Y + + +L
Sbjct: 583 VQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFEL 642
Query: 298 LMLVPRLLNDIQSYQKEIADGKQNSVI-LYLRENPEADIEDSVAYVRELIATKEKELLEH 356
+ L RL ND ++YQ E A G+Q S I Y+++NP A ED++ ++ ++ KE
Sbjct: 643 VSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKE---- 698
Query: 357 ALMDGF---SDLPRPCKQLHLFCMKAFQMFFHSSNRYD-SNTEMIDDVQKAFYIPLKLQT 412
A + F +D+P CK Q+F+ + Y +N E+ D ++K + P+++ +
Sbjct: 699 ASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQVGS 758
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 195/379 (51%), Gaps = 13/379 (3%)
Query: 37 SFRKVIEHELDFPWLTRMEHLEYRMWIEEKDMNALWMGKASFHRLSCSYNDKLMQLAIQN 96
+ R +E+ L +PW M LE R +IE + +W+GK + S N+K ++LA +
Sbjct: 412 NIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYIS-NEKYLELAKLD 470
Query: 97 YGFRQLVYKRELEELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILA 156
+ Q +++ EL++L+RW + + +D+ F RE+ T YF+ A+ I P S R +
Sbjct: 471 FNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERVTEIYFSPASFI--FEPEFSKCREVYT 528
Query: 157 KSAILITVADDFFDMEGSLNELKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAE 213
K++ + DD +D GSL++LK ++VKRWD + K F +++A+
Sbjct: 529 KTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAK 588
Query: 214 KHLQQQGRDITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTA 273
+ ++QGRD+ ++++W ++ EA WS++ PS EY+E +SIA T+VL +
Sbjct: 589 EGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLIS 648
Query: 274 SCFLNPSLPNYKFRPAQYDT-VTKLLMLVPRLLNDIQSYQKEIADGKQNSVI-LYLRENP 331
+ F L + ++ +L+ L RL+ND ++YQ E G+ S I Y++++P
Sbjct: 649 ALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHP 708
Query: 332 EADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSSN--R 389
+ E+++ +V ++ +EL + + D+ K+L + Q+F+ +
Sbjct: 709 KISEEEALQHVYSVMENALEELNREFVNNKIPDI---YKRLVFETARIMQLFYMQGDGLT 765
Query: 390 YDSNTEMIDDVQKAFYIPL 408
+ E+ + V+ + P+
Sbjct: 766 LSHDMEIKEHVKNCLFQPV 784
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 206/422 (48%), Gaps = 22/422 (5%)
Query: 2 FAEEYELQEARSFA----RKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHL 57
F E L EA+SFA R++LEK+ T+ + + + I++ L W + +
Sbjct: 405 FPGENILDEAKSFATKYLREALEKSETSSAWNNKQ----NLSQEIKYALKTSWHASVPRV 460
Query: 58 EYRMWIEEKDMNALWMGKASFHRLSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRD 117
E + + + + + K + +L N+K ++L ++ Q +++ E++ + W RD
Sbjct: 461 EAKRYCQVYRPDYARIAKCVY-KLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRD 519
Query: 118 NNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSAILITVADDFFDMEGSLNE 177
+ L F RE+ YF AA G P + R + K A L TV DD +D G+L+E
Sbjct: 520 SGLPLFTFARERPLEFYFLVAA--GTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDE 577
Query: 178 LKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYET 234
LK +AV+RWD + L + K + +V E+A + ++QGR++ + + W +
Sbjct: 578 LKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDY 637
Query: 235 FASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYK-FRPAQYD- 292
+ EA W + P+++EY++ G+ SI L+L+ ++ L + + Y
Sbjct: 638 LLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPG 697
Query: 293 --TVTKLLMLVPRLLNDIQSYQKEIADGK-QNSVILYLRENPEADIEDSVAYVRELIATK 349
+T+L L+ RL +D ++Y+ E A G+ +S+ Y++++PE E+++ ++ ++
Sbjct: 698 RRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPA 757
Query: 350 EKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYD-SNTEMIDDVQKAFYIPL 408
KEL L D+P CK++ + + F + + S E+ D +++ PL
Sbjct: 758 VKELTREFLKP--DDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPL 815
Query: 409 KL 410
L
Sbjct: 816 PL 817
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/360 (26%), Positives = 163/360 (45%), Gaps = 38/360 (10%)
Query: 5 EYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIE 64
E L+ AR FA K LE+ + G D +T I + LD P R++ +WIE
Sbjct: 155 ETTLESAREFATKFLEEKVNEGGVDGDLLT------RIAYSLDIPLHWRIKRPNAPVWIE 208
Query: 65 EKDMNALWMGKASFHRLSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNLSD-M 123
++R N +++LAI + Q ++ EL+E RW R+ + +
Sbjct: 209 -------------WYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKL 255
Query: 124 GFGREKTTYCYFATAAAIGVSLPYD-SHVRLILAKSAILITVADDFFDMEGSLNELKSLA 182
F R++ CYF G+ P + R+++ K LITV DD +D+ G+L EL+
Sbjct: 256 PFARDRLVECYFWNT---GIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFT 312
Query: 183 DAVKRWDGKG---LSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFASWL 239
D ++RWD L + + F AL+ V + + ++++G ++ L+ W + ++
Sbjct: 313 DLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYM 372
Query: 240 TEATWSKSGRTPSMEEYLETGMISIAA-----HTLVLTASCFLNPSLPN-YKFRPAQYDT 293
EA W G PS+EEYLE SI+ H F ++ + YK Y
Sbjct: 373 VEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYK-----YHD 427
Query: 294 VTKLLMLVPRLLNDIQSYQKEIADGKQNSVILYLRENPEADIEDSVAYVRELIATKEKEL 353
+ + V RL +D+ + +E++ G + + A ++ +V+ LIA K++
Sbjct: 428 LVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKM 487
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 155/328 (47%), Gaps = 30/328 (9%)
Query: 8 LQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIEEKD 67
L EAR FA L K ++ G + + + H L+ P R + LE
Sbjct: 168 LDEARVFAISHL-KELSEEKIGKE------LAEQVNHALELPLHRRTQRLE--------- 211
Query: 68 MNALWMGKASFHRLSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNL-SDMGFG 126
A+W +A +R N L++LAI +Y Q VY+R+L E RW R L + + F
Sbjct: 212 --AVWSIEA--YRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFA 267
Query: 127 REKTTYCYFATAAAIGVSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAV 185
R++ ++ A+GV+ P S R +AK +T+ DD +D+ G+L+EL+ DAV
Sbjct: 268 RDRLIESFYW---AVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAV 324
Query: 186 KRWDGKG---LSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFASWLTEA 242
+RWD L + K F AL ++E+A +L+ +G +I L W + ++L EA
Sbjct: 325 ERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEA 384
Query: 243 TWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQ-YDTVTKLLMLV 301
W + TP+ ++Y S + ++ A + ++ + Q Y + +
Sbjct: 385 KWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHI 444
Query: 302 PRLLNDIQSYQKEIADGKQ-NSVILYLR 328
RL ND+ S EIA G+ NSV Y+R
Sbjct: 445 FRLCNDLASASAEIARGETANSVSCYMR 472
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 164/357 (45%), Gaps = 35/357 (9%)
Query: 8 LQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIE--- 64
L+ AR FA K L+K + G D+ R H LD P R++ +E R +I+
Sbjct: 162 LELAREFATKCLQKKLDEGGNEIDENLLLWIR----HSLDLPLHWRIQSVEARWFIDAYA 217
Query: 65 -EKDMNALWMGKASFHRLSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRW-SRDNNLSD 122
DMN L + +LA N+ Q +++EL++L RW SR
Sbjct: 218 RRPDMNPL-----------------IFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEK 260
Query: 123 MGFGREKTTYCYFATAAAIGVSLPYD-SHVRLILAKSAILITVADDFFDMEGSLNELKSL 181
+ F R++ +F A+G+ P+ + R + A +L TV DD +D+ G+L+EL+
Sbjct: 261 LPFVRDRLVESFFW---AVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELF 317
Query: 182 ADAVKRWDGKGLSG---HSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFASW 238
D KRWD + ++ + + + + +S+ A L++ G L+ + ++
Sbjct: 318 TDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAY 377
Query: 239 LTEATWSKSGRTPSMEEYLETGMISIAAHTLVL-TASCFLNPSLPNYKFRPA-QYDTVTK 296
EA W SG TPS++EYL IS+A+ ++ T F N S QY +
Sbjct: 378 FHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILC 437
Query: 297 LLMLVPRLLNDIQSYQKEIADGKQNSVILYLRENPEADIEDSVAYVRELIATKEKEL 353
L ++ RL +D+ + E+A G I + A E++V +V+ LI K++
Sbjct: 438 LAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDM 494
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 98/365 (26%), Positives = 165/365 (45%), Gaps = 29/365 (7%)
Query: 5 EYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIE 64
E L+ AR FA K L+K + D+ S IE L+ P R++ R +I+
Sbjct: 183 EETLRLARDFATKFLQKRVLVDK----DINLLS---SIERALELPTHWRVQMPNARSFID 235
Query: 65 EKDMNALWMGKASFHRLSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNL-SDM 123
++ N +++LA ++ Q +++EL+E RW L ++
Sbjct: 236 A-------------YKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHEL 282
Query: 124 GFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLAD 183
F R++ CY+ T V + R++L K L+T DD FD+ G+L EL+
Sbjct: 283 PFVRDRIVECYYWTTGV--VERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTT 340
Query: 184 AVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFASWLT 240
A++RWD K L + + + AL V+E+A L+ +G D T L+ +W S+L
Sbjct: 341 AIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLI 400
Query: 241 EATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPA-QYDTVTKLLM 299
EA W G PS+EEY++ ISI ++ L S+ +Y + +
Sbjct: 401 EAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASC 460
Query: 300 LVPRLLNDIQSYQKEIADGK-QNSVILYLRENPEADIEDSVAYVRELIATKEKELLEHAL 358
+ RL +D+ + E+ G SV Y+ E ++ E++ +VR LI K + + +
Sbjct: 461 TILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASE-EEAREHVRSLIDQTWKMMNKEMM 519
Query: 359 MDGFS 363
FS
Sbjct: 520 TSSFS 524
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 84 SYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRD-NNLSDMGFGREKTTYCYFATAAAIG 142
S N+ L++ A ++ Q+++K+EL ++ RW +D + ++ + + R++ CYF+ A+G
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFS---ALG 276
Query: 143 VSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKG---LSGHSK 198
V P S R++L K+ +I++ DD FD G++ EL++ DA++RWD L + K
Sbjct: 277 VYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMK 336
Query: 199 TIFGALDGLVSELAEKHLQQQGRD-ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYL 257
+ A+ L + EK L GR I + E ++ E+TW G TP + EYL
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 395
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 84 SYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRD-NNLSDMGFGREKTTYCYFATAAAIG 142
S N+ L++ A ++ Q+++K+EL ++ RW +D + ++ + + R++ CYF+ A+G
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFS---ALG 276
Query: 143 VSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKG---LSGHSK 198
V P S R++L K+ +I++ DD FD G++ EL++ DA++RWD L + K
Sbjct: 277 VYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMK 336
Query: 199 TIFGALDGLVSELAEKHLQQQGRD-ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYL 257
+ A+ L + EK L GR I + E ++ E+TW G TP + EYL
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 395
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 84 SYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRD-NNLSDMGFGREKTTYCYFATAAAIG 142
S N+ L++ A ++ Q+++K+EL ++ RW +D + ++ + + R++ CYF A+G
Sbjct: 207 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFW---ALG 263
Query: 143 VSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKG---LSGHSK 198
V P S R++L K+ +I++ DD FD G++ EL++ DA++RWD L + K
Sbjct: 264 VYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMK 323
Query: 199 TIFGALDGLVSELAEKHLQQQGRD-ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYL 257
+ A+ L + EK L GR I + E ++ E+TW G TP + EYL
Sbjct: 324 ISYKAILDLYKDY-EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 382
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 84 SYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRD-NNLSDMGFGREKTTYCYFATAAAIG 142
S N+ L++ A ++ Q+++K+EL ++ RW +D + ++ + + R++ CYF A+G
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFW---ALG 276
Query: 143 VSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKG---LSGHSK 198
V P S R++L K+ +I++ DD FD G++ EL++ DA++RWD L + K
Sbjct: 277 VYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMK 336
Query: 199 TIFGALDGLVSELAEKHLQQQGRD-ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYL 257
+ A+ L + EK L GR I + E ++ E+TW G TP + EYL
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 395
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 84 SYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRD-NNLSDMGFGREKTTYCYFATAAAIG 142
S N+ L++ A ++ Q+++K+EL ++ RW +D + ++ + + R++ CYF A+G
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFW---ALG 276
Query: 143 VSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKG---LSGHSK 198
V P S R++L K+ +I++ DD FD G++ EL++ DA++RWD L + K
Sbjct: 277 VYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMK 336
Query: 199 TIFGALDGLVSELAEKHLQQQGRD-ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYL 257
+ A+ L + EK L GR I + E ++ E+TW G TP + EYL
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 395
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 84 SYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRD-NNLSDMGFGREKTTYCYFATAAAIG 142
S N+ L++ A ++ Q+++K+EL ++ RW +D + ++ + + R++ CYF A+G
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFW---ALG 276
Query: 143 VSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKG---LSGHSK 198
V P S R++L K+ +I++ DD FD G++ EL++ DA++RWD L + K
Sbjct: 277 VYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMK 336
Query: 199 TIFGALDGLVSELAEKHLQQQGRD-ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYL 257
+ A+ L + EK L GR I + E ++ E+TW G TP + EYL
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 395
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 84 SYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRD-NNLSDMGFGREKTTYCYFATAAAIG 142
S N+ L++ A ++ Q+++K+EL ++ RW +D + ++ + + R++ CYF A+G
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFW---ALG 276
Query: 143 VSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKG---LSGHSK 198
V P S R++L K+ +I++ DD FD G++ EL++ DA++RWD L + K
Sbjct: 277 VYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMK 336
Query: 199 TIFGALDGLVSELAEKHLQQQGRD-ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYL 257
+ A+ L + EK L GR I + E ++ E+TW G TP + EYL
Sbjct: 337 ISYKAILDLYKDY-EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 395
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 84 SYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRD-NNLSDMGFGREKTTYCYFATAAAIG 142
S N+ L++ A ++ Q+++K+EL ++ RW +D + ++ + + R++ CYF A+G
Sbjct: 222 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFW---ALG 278
Query: 143 VSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKG---LSGHSK 198
V P S R++L K+ +I++ DD FD G++ EL++ DA++RWD L + K
Sbjct: 279 VYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMK 338
Query: 199 TIFGALDGLVSELAEKHLQQQGRD-ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYL 257
+ A+ L + EK L GR I + E ++ E+TW G TP + EYL
Sbjct: 339 ISYKAILDLYKDY-EKELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYL 397
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 84 SYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRD-NNLSDMGFGREKTTYCYFATAAAIG 142
S N+ L++ A ++ Q+++K+EL ++ RW +D + ++ + + R++ CYF T +G
Sbjct: 222 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWT---LG 278
Query: 143 VSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKG---LSGHSK 198
V P S R++L K+ +I++ DD FD G++ EL++ DA++RWD L + K
Sbjct: 279 VYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMK 338
Query: 199 TIFGALDGLVSELAEKHLQQQGRD-ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYL 257
+ A+ L + EK L GR I + E ++ E+TW G TP + EYL
Sbjct: 339 ISYKAILDLYKDY-EKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYL 397
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 11/236 (4%)
Query: 84 SYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNLS-DMGFGREKTTYCYFATAAAIG 142
S+N L++ A ++ Q ++++EL E+ RW +D + + + R++ YF + G
Sbjct: 226 SHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWIS---G 282
Query: 143 VSL-PYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKGLS---GHSK 198
V P S R +L K + ++ DD +D + EL +A++RWD K + + K
Sbjct: 283 VYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMK 342
Query: 199 TIFGALDGLVSELAEKHLQQQGRDITNDL-KDIWYETFASWLTEATWSKSGRTPSMEEYL 257
+ AL + E+ + + + GR + K+ S+L EA W+ PS EE+
Sbjct: 343 PSYKALLDVYEEMVQL-VAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFK 401
Query: 258 ETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYD-TVTKLLMLVPRLLNDIQSYQ 312
+ + L +T+ + + F+ A D + + ++ R ++D+ ++
Sbjct: 402 ANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHK 457
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 21/214 (9%)
Query: 42 IEHELDFPWLTRMEHLEYRMWIEE-KDMNALWMGKASFHRLSCSYNDKLMQLAIQNYGFR 100
I L+ PW + +E R +I++ N +W+GK + +R+ N+ ++LA Q+Y
Sbjct: 391 IGFALEIPWYASLPRVETRFYIDQYGGENDVWIGK-TLYRMPYVNNNGYLELAKQDYNNC 449
Query: 101 QLVYKRELEELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSAI 160
Q ++ E + ++W +N LS+ G R + CY+ AA I S SH R++ AKS++
Sbjct: 450 QAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYLAAATIFES--ERSHERMVWAKSSV 507
Query: 161 LITVADDFFDM-------------EGSLNELKS---LADAVKRWDGKGLSGHSKTIFGAL 204
L+ F E N +S D R D G S + + G L
Sbjct: 508 LVKAISSSFGESSDSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPG-SVQASRLAGVL 566
Query: 205 DGLVSELAEKHLQQQGRDITNDLKDIWYETFASW 238
G +++++ GRD+ N L W + W
Sbjct: 567 IGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKW 600
>pdb|1PS1|A Chain A, Pentalenene Synthase
pdb|1PS1|B Chain B, Pentalenene Synthase
Length = 337
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 231 WYETFASWLTEATWSKSGRTP--SMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRP 288
W F ++ EA S+ P S +YL +I V A +P+ F
Sbjct: 143 WRNYFDGYVDEAE-SRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS 201
Query: 289 AQYDTVTKLLMLVPRLLNDIQSYQKEIADGKQNSVILYLRENPEADIEDSVAYVR-ELIA 347
A + ++ + V LLNDI S +KE A G+QN++++ LR SV++++ E+ A
Sbjct: 202 AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKSRSVSHMQNEVRA 261
Query: 348 TKEKELL 354
E+ LL
Sbjct: 262 RLEQYLL 268
>pdb|1HM4|A Chain A, N219l Pentalenene Synthase
pdb|1HM4|B Chain B, N219l Pentalenene Synthase
pdb|1HM7|A Chain A, N219l Pentalenene Synthase
pdb|1HM7|B Chain B, N219l Pentalenene Synthase
Length = 336
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 231 WYETFASWLTEATWSKSGRTP--SMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRP 288
W F ++ EA S+ P S +YL +I V A +P+ F
Sbjct: 142 WRNYFDGYVDEAE-SRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS 200
Query: 289 AQYDTVTKLLMLVPRLLNDIQSYQKEIADGKQNSVILYLRENPEADIEDSVAYVR-ELIA 347
A + ++ + V LL DI S +KE A G+QN++++ LR SV++++ E+ A
Sbjct: 201 AVMSAMLQIAVDVNLLLLDIASLEKEEARGEQNNMVMILRREHGWSKSRSVSHMQNEVRA 260
Query: 348 TKEKELL 354
E+ LL
Sbjct: 261 RLEQYLL 267
>pdb|3LG5|A Chain A, F198a Epi-Isozizaene Synthase: Complex With Mg, Inorganic
Pyrophosphate And Benzyl Triethyl Ammonium Cation
Length = 381
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 248 GRTPSMEEYLETGMISIAAHTLVLTASCFLNPS----LPNYKFRPAQYDTVTKLLMLVPR 303
G P +EEYLE ++ AAH + + L PS LP+ + Y L
Sbjct: 202 GIVPGVEEYLELRRLT-AAHWIW---TDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAA 257
Query: 304 LLNDIQSYQKEIADGKQNSVILYLRENPEADIEDSVAYVRELIATKEKELL 354
ND+ S KEIA + +++ + L + +E+++ VR + E L
Sbjct: 258 WYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECITEFL 308
>pdb|3AKF|A Chain A, Crystal Structure Of Exo-1,5-Alpha-L-Arabinofuranosidase
pdb|3AKG|A Chain A, Crystal Structure Of Exo-1,5-Alpha-L-Arabinofuranosidase
Complexed With Alpha-1,5-L-Arabinofuranobiose
pdb|3AKH|A Chain A, Crystal Structure Of Exo-1,5-Alpha-L-Arabinofuranosidase
Complexed With Alpha-1,5-L-Arabinofuranotriose
pdb|3AKI|A Chain A, Crystal Structure Of Exo-1,5-Alpha-L-Arabinofuranosidase
Complexed With Alpha-L-Arabinofuranosyl Azido
Length = 468
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 54 MEHLEYRMWIEEKDMNALWMGKASFHRLSCSYNDKLMQLAIQNYGFRQLVYKRELEELKR 113
+ H Y +W+E+ D ++ + ASF R D +A ++Y + Y R E L R
Sbjct: 380 LRHKNYEVWVEKNDGSSAFKNDASFSR-RAGLADSADGIAFESYNYPGR-YLRHYENLLR 437
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,723,891
Number of Sequences: 62578
Number of extensions: 609965
Number of successful extensions: 1380
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 37
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)