Query 011444
Match_columns 485
No_of_seqs 220 out of 992
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:16:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s9v_A Abietadiene synthase, c 100.0 2E-105 6E-110 889.0 39.9 403 1-409 376-785 (785)
2 3sdr_A Alpha-bisabolene syntha 100.0 2E-105 5E-110 892.8 31.8 405 1-410 404-817 (817)
3 3p5p_A Taxadiene synthase; cla 100.0 1E-103 4E-108 872.7 38.4 400 1-411 352-757 (764)
4 3g4d_A (+)-delta-cadinene synt 100.0 6E-103 2E-107 838.5 33.5 384 1-410 164-554 (554)
5 3n0f_A Isoprene synthase; terp 100.0 1E-102 4E-107 837.1 32.0 384 1-409 161-551 (555)
6 3m00_A Aristolochene synthase; 100.0 3E-101 1E-105 824.8 31.8 383 1-410 159-550 (550)
7 2ong_A 4S-limonene synthase; m 100.0 7.1E-99 2E-103 812.0 36.3 385 1-409 151-543 (543)
8 1n1b_A (+)-bornyl diphosphate 100.0 5.3E-99 2E-103 812.6 32.1 387 1-409 155-549 (549)
9 2j5c_A 1,8-cineole synthase; t 100.0 1.9E-98 7E-103 810.7 28.0 383 1-409 179-569 (569)
10 3pya_A ENT-copalyl diphosphate 100.0 8.5E-79 2.9E-83 667.4 24.4 353 1-409 350-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.8E-50 6E-55 412.1 23.2 258 95-359 9-272 (337)
12 1di1_A Aristolochene synthase; 100.0 1.4E-47 4.7E-52 384.2 24.5 249 95-358 5-265 (300)
13 3bny_A Aristolochene synthase; 100.0 2.8E-46 9.5E-51 378.4 23.6 249 95-358 19-279 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 3.9E-46 1.3E-50 387.0 21.5 257 95-358 49-313 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 4.9E-36 1.7E-40 314.7 18.7 256 95-359 118-392 (433)
16 1yyq_A Trichodiene synthase; t 99.9 2.5E-22 8.5E-27 206.7 19.1 269 95-392 20-307 (374)
17 3acx_A Dehydrosqualene synthas 81.5 39 0.0013 32.5 18.1 202 142-373 32-247 (293)
18 3ipi_A Geranyltranstransferase 70.4 81 0.0028 30.5 14.2 144 222-379 127-278 (295)
19 2ftz_A Geranyltranstransferase 64.7 88 0.003 30.1 13.1 123 223-355 135-264 (284)
20 4hd1_A Squalene synthase HPNC; 59.0 1.3E+02 0.0044 28.9 19.0 165 142-337 33-199 (294)
21 3m0g_A Farnesyl diphosphate sy 56.1 45 0.0015 32.5 9.2 113 232-354 147-268 (297)
22 2q80_A Geranylgeranyl pyrophos 53.2 1.3E+02 0.0044 29.1 12.1 83 222-312 111-195 (301)
23 3lmd_A Geranylgeranyl pyrophos 49.8 1.4E+02 0.0048 29.7 11.9 85 222-312 160-246 (360)
24 2q58_A Fragment, farnesyl pyro 44.7 1.7E+02 0.0059 29.1 11.7 87 224-312 170-260 (368)
25 1rtr_A Geranyltranstransferase 42.4 1.2E+02 0.0042 29.3 9.9 111 232-354 148-270 (301)
26 3p8l_A Geranyltranstransferase 38.3 1.9E+02 0.0065 28.0 10.6 114 233-355 157-279 (302)
27 2e8v_A Geranylgeranyl pyrophos 38.2 1.6E+02 0.0055 28.9 10.2 86 223-313 132-221 (340)
28 4dhd_A Polyprenyl synthetase; 34.4 2.8E+02 0.0094 27.5 11.3 86 223-312 133-231 (358)
29 1wmw_A Geranylgeranyl diphosph 33.9 1.2E+02 0.0043 29.5 8.6 84 223-312 131-218 (330)
30 3lsn_A Geranyltranstransferase 33.8 2.6E+02 0.0089 27.0 10.7 113 234-353 154-274 (304)
31 3rmg_A Octaprenyl-diphosphate 32.4 3.6E+02 0.012 26.3 14.2 86 222-312 133-220 (334)
32 3pde_A Farnesyl-diphosphate sy 31.7 2.8E+02 0.0097 26.8 10.6 110 233-354 156-277 (309)
33 3ts7_A Geranyltranstransferase 31.4 2.7E+02 0.0092 27.2 10.4 111 232-352 158-279 (324)
34 3p8r_A Geranyltranstransferase 30.3 2.2E+02 0.0077 27.4 9.6 113 232-354 158-281 (302)
35 4f62_A Geranyltranstransferase 29.7 2.3E+02 0.008 27.6 9.6 112 233-354 152-274 (317)
36 3apz_A Geranyl diphosphate syn 28.3 4.3E+02 0.015 25.8 11.5 87 222-313 153-241 (348)
37 1v4e_A Octoprenyl-diphosphate 27.6 2E+02 0.0069 27.7 8.7 84 222-314 127-212 (299)
38 2h8o_A Geranyltranstransferase 27.4 2.4E+02 0.0082 27.7 9.3 111 232-354 192-314 (335)
39 3oyr_A Trans-isoprenyl diphosp 26.6 4.6E+02 0.016 25.7 12.1 87 222-313 151-239 (345)
40 3lom_A Geranyltranstransferase 26.3 3.4E+02 0.012 26.3 10.2 116 232-353 158-281 (313)
41 3llw_A Geranyltranstransferase 25.0 2.8E+02 0.0096 26.9 9.2 112 232-354 159-280 (311)
42 3uca_A Geranyltranstransferase 24.7 4.2E+02 0.014 25.8 10.5 115 232-354 180-303 (324)
43 3nf2_A Putative polyprenyl syn 23.3 1.8E+02 0.0061 28.8 7.5 85 223-312 144-230 (352)
44 1xkm_B Distinctin chain B; por 22.9 36 0.0012 20.0 1.3 12 57-68 7-18 (26)
45 1rqj_A Geranyltranstransferase 21.5 4.1E+02 0.014 25.4 9.6 113 232-355 152-276 (299)
46 3fau_A NEDD4-binding protein 2 20.8 78 0.0027 24.2 3.4 21 332-352 7-27 (82)
47 2x3m_A Hypothetical protein OR 20.5 88 0.003 27.6 3.9 104 233-342 95-198 (239)
No 1
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.8e-105 Score=888.96 Aligned_cols=403 Identities=26% Similarity=0.472 Sum_probs=386.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHhhcCCccCCchhhHHHHhHHHhcccccccccccccc
Q 011444 1 MFAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIEEKDMNALWMGKASFHR 80 (485)
Q Consensus 1 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~d~~~~~~~l~~eV~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~Kt~~yr 80 (485)
+||||+|||||++||++||++.+.+++..|||+++++|++||+|||++|||+++||||||+||++|+++++||||| .||
T Consensus 376 ~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~i~Kt-~yr 454 (785)
T 3s9v_A 376 SFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKT-VYM 454 (785)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSS-EEC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccCchHHHHHHHHHHhcccchhhhcc-ccc
Confidence 4899999999999999999999888888999999999999999999999999999999999999999999999999 589
Q ss_pred ccccccHHHHHHhhccchhhhhhhHHHHHHHHHhhhhCCCCCcchhhhHHHHHhHHHhhhhcccCCCCchHHHHHHHHHH
Q 011444 81 LSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSAI 160 (485)
Q Consensus 81 ~~~~~n~~lLelAkldFn~~Qs~h~~El~~l~~W~k~~~L~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL~~ak~~~ 160 (485)
||+.+|++||||||+|||+||++||+||++++|||+++||.++||+|+|+++||||++| ++|+|++|.+|+++||+++
T Consensus 455 ~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~--~~feP~~s~~R~~~aK~~~ 532 (785)
T 3s9v_A 455 MPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFTDLNFTRERVTEIYFSPAS--FIFEPEFSKCREVYTKTSN 532 (785)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCSSSCCCHHHHHHHHHH--HSCSGGGHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCcCccHHHHHHHHHHHHHH--hcCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHhhhhcccCCCHHHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 011444 161 LITVADDFFDMEGSLNELKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFAS 237 (485)
Q Consensus 161 ~~fi~DD~~D~~gt~eEl~~~~~ai~rwd---~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~a 237 (485)
+++++||+||.|||+||++.||+||+||| ++.+|+|||+||.+|+++++|++.++.+.+|+++.++++++|++++++
T Consensus 533 l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw~~l~~a 612 (785)
T 3s9v_A 533 FTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEA 612 (785)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 467999999999999999999999998889999999999999999999
Q ss_pred HHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCcc-chHHHHHHHHHHHhcChhhHHHHHh
Q 011444 238 WLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQY-DTVTKLLMLVPRLLNDIQSYQKEIA 316 (485)
Q Consensus 238 ~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~-~~L~~~~~~i~rL~NDI~S~~kE~~ 316 (485)
|++||+|+.+|++||+||||++|.+|+|++++++++++++|..+|+++++++.+ ++|+++++.|+||+|||.||++|++
T Consensus 613 yl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~ 692 (785)
T 3s9v_A 613 YTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERG 692 (785)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHh
Confidence 999999999999999999999999999999999999999999999999998876 9999999999999999999999999
Q ss_pred cCCchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHhHhhhhhhhcccCCCCCCch-
Q 011444 317 DGKQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDSNT- 394 (485)
Q Consensus 317 ~G~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~- 394 (485)
+|+++|+|. ||+|++|+|+|||++++.++|+++||+||++++++ + +|++|+++++|++|++++||+++||||.++
T Consensus 693 rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~--~-~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~ 769 (785)
T 3s9v_A 693 QGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNN--K-IPDIYKRLVFETARIMQLFYMQGDGLTLSHD 769 (785)
T ss_dssp HSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHS--C-CCHHHHHHHHHHHHHHHHHTCCCC----CHH
T ss_pred cCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHHHHHhcCCCCCCCCCh
Confidence 999999999 99999889999999999999999999999999984 5 999999999999999999999999999974
Q ss_pred -hHHHHHHhhhccccc
Q 011444 395 -EMIDDVQKAFYIPLK 409 (485)
Q Consensus 395 -~~k~~I~~ll~~pi~ 409 (485)
+||++|++||++||.
T Consensus 770 ~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 770 MEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHhcccCC
Confidence 599999999999973
No 2
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.5e-105 Score=892.79 Aligned_cols=405 Identities=26% Similarity=0.447 Sum_probs=384.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHhhcCCccCCchhhHHHHhHHHhcccccccccccccc
Q 011444 1 MFAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIEEKDMNALWMGKASFHR 80 (485)
Q Consensus 1 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~d~~~~~~~l~~eV~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~Kt~~yr 80 (485)
+||||+|||||++||++||++.+.+++..|||++.++|++||+|||++|||+++||||||+||++|+++++||||| +||
T Consensus 404 ~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt-~yr 482 (817)
T 3sdr_A 404 AFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKC-VYK 482 (817)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTCCHHHHHHHHHTTCCTTCCEESSS-EEC
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhccChHHHHHHHHHHhCccchhhhhh-ccc
Confidence 4899999999999999999999877667788888889999999999999999999999999999999999999999 889
Q ss_pred ccccccHHHHHHhhccchhhhhhhHHHHHHHHHhhhhCCCCCcchhhhHHHHHhHHHhhhhcccCCCCchHHHHHHHHHH
Q 011444 81 LSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSAI 160 (485)
Q Consensus 81 ~~~~~n~~lLelAkldFn~~Qs~h~~El~~l~~W~k~~~L~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL~~ak~~~ 160 (485)
||+.+|++||||||+|||+||++||+||++++|||+++||.+++|+|+|+++||||++| ++|+|++|.+|+++||+++
T Consensus 483 ~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~--~~feP~~s~~R~~~aK~~~ 560 (817)
T 3sdr_A 483 LPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPLFTFARERPLEFYFLVAA--GTYEPQYAKCRFLFTKVAC 560 (817)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGCTTSCCCHHHHHHHHHT--TSCCGGGHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCCCcCccHHHHHHHHHHHHHH--hccCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHhhhhcccCCCHHHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 011444 161 LITVADDFFDMEGSLNELKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFAS 237 (485)
Q Consensus 161 ~~fi~DD~~D~~gt~eEl~~~~~ai~rwd---~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~a 237 (485)
+++++||+||.|||+||++.||+||+||| +++||+|||+||.+|+++++|++.++.+.||+++.++++++|++++++
T Consensus 561 l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~a 640 (817)
T 3sdr_A 561 LQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLG 640 (817)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCCCCCHHHHHHhchhhhHHHH-HHHHHHHhcCCCCCccccccCccc---hHHHHHHHHHHHhcChhhHHH
Q 011444 238 WLTEATWSKSGRTPSMEEYLETGMISIAAHT-LVLTASCFLNPSLPNYKFRPAQYD---TVTKLLMLVPRLLNDIQSYQK 313 (485)
Q Consensus 238 ~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~-~~~~~~~~~g~~Lp~ev~~~~~~~---~L~~~~~~i~rL~NDI~S~~k 313 (485)
|++||+|+++|++||+||||++|.+|+|+++ +++++.+++|..+|+++++++.++ +|+++++.|+||+|||.||++
T Consensus 641 yl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~ 720 (817)
T 3sdr_A 641 YYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKA 720 (817)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHH
Confidence 9999999999999999999999999999999 888888999999999999888766 999999999999999999999
Q ss_pred HHhcCCchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHhHhhhhhhhcccCCCCCC
Q 011444 314 EIADGKQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDS 392 (485)
Q Consensus 314 E~~~G~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dg~t~ 392 (485)
|+++|+++|.|. ||+|++|+|+|||++++.++|+++||+||++|++++ .+|++|+++++|++|++++||+++||||.
T Consensus 721 E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~--~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~ 798 (817)
T 3sdr_A 721 EKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPD--DVPFACKKMLFEETRVTMVIFKDGDGFGV 798 (817)
T ss_dssp ------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCC--SSCHHHHHHHHHHHHHHHHHTCSCCSSCC
T ss_pred HHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999 999997799999999999999999999999999853 69999999999999999999999999999
Q ss_pred c-hhHHHHHHhhhcccccC
Q 011444 393 N-TEMIDDVQKAFYIPLKL 410 (485)
Q Consensus 393 ~-~~~k~~I~~ll~~pi~~ 410 (485)
+ ++||++|++||++||++
T Consensus 799 ~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 799 SKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp CHHHHHHHHHHHHTCCCCC
T ss_pred chHHHHHHHHHHhcCCCCC
Confidence 7 58999999999999985
No 3
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.1e-103 Score=872.69 Aligned_cols=400 Identities=29% Similarity=0.472 Sum_probs=376.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHhhcCCccCCchhhHHHHhHHHhcccccccccccccc
Q 011444 1 MFAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIEEKDMNALWMGKASFHR 80 (485)
Q Consensus 1 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~d~~~~~~~l~~eV~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~Kt~~yr 80 (485)
+||||+|||||++||++||++.+.+ +|+++++|++||+|||++|||+++||||||+||++|+++++||||| +||
T Consensus 352 ~~~gE~iLdeA~~Fs~~~L~~~~~~-----~~~~~~~L~~eV~~aL~~P~~~~l~Rlear~yI~~Y~~~~~~i~Kt-~yr 425 (764)
T 3p5p_A 352 AFPDERAMDDARKFAEPYLREALAT-----KISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKT-LYR 425 (764)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHH-----TSCSSSHHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCTTCCEESSS-EEC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhc-----cCCCCccHHHHHHHHhcCchhccchHHHHHHHHHHhcccchhhhcc-ccc
Confidence 4899999999999999999998874 3557789999999999999999999999999999999999999999 889
Q ss_pred ccccccHHHHHHhhccchhhhhhhHHHHHHHHHhhhhCCCCCcchhhhHHHHHhHHHhhhhcccCCCCchHHHHHHHHHH
Q 011444 81 LSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSAI 160 (485)
Q Consensus 81 ~~~~~n~~lLelAkldFn~~Qs~h~~El~~l~~W~k~~~L~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL~~ak~~~ 160 (485)
||+.+|++||||||+|||+||++||+||+++++||+++||.++||+|+|+++||||++ + |+|++|.+|+++||+++
T Consensus 426 ~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l~~l~faRdr~ve~Yfw~~---~-feP~~s~~R~~~aK~~~ 501 (764)
T 3p5p_A 426 MPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMADINFTRHRVAEVYFSSA---T-FEPEYSATRIAFTKIGC 501 (764)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTTTCCHHHHHHHHHHTC---C-CCGGGHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCCCcCccHHHHHHHHHHHHH---h-CCccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 5 99999999999999999
Q ss_pred HHHHhhhhcccCCCHHHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 011444 161 LITVADDFFDMEGSLNELKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFAS 237 (485)
Q Consensus 161 ~~fi~DD~~D~~gt~eEl~~~~~ai~rwd---~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~a 237 (485)
|++++||+||.|||+||++.||+||+||| +++||+|||+||.+|++++++++.++.+.+|+++.++++++|++++++
T Consensus 502 l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw~~l~~a 581 (764)
T 3p5p_A 502 LQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNC 581 (764)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 467999999999999999999999998889999999999999999999
Q ss_pred HHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCcc-chHHHHHHHHHHHhcChhhHHHHHh
Q 011444 238 WLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQY-DTVTKLLMLVPRLLNDIQSYQKEIA 316 (485)
Q Consensus 238 ~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~-~~L~~~~~~i~rL~NDI~S~~kE~~ 316 (485)
|++||+|+.+|++||+||||++|.+|+|++++++.+.+++|..+|+++++++.+ ++|+++++.|+||+|||.||++|++
T Consensus 582 yl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~ 661 (764)
T 3p5p_A 582 YVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKA 661 (764)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHh
Confidence 999999999999999999999999999999999999999999999999988766 9999999999999999999999999
Q ss_pred cCCchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHhHhhhhhhhcccCCCCCCch-
Q 011444 317 DGKQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDSNT- 394 (485)
Q Consensus 317 ~G~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~- 394 (485)
+|+++|+|. ||+|++|+|+|||++++.++|+++||+||++|++. ++.+|++|+++++|++|++++||+++||||.++
T Consensus 662 rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~-~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~ 740 (764)
T 3p5p_A 662 RGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKP-SNDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANE 740 (764)
T ss_dssp TTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC-CSSSCHHHHHHHHHTHHHHHHHSCC-------CC
T ss_pred cCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcH
Confidence 999999999 99999779999999999999999999999999972 247999999999999999999999999999974
Q ss_pred hHHHHHHhhhcccccCC
Q 011444 395 EMIDDVQKAFYIPLKLQ 411 (485)
Q Consensus 395 ~~k~~I~~ll~~pi~~~ 411 (485)
+||++|++||++||++.
T Consensus 741 ~~k~~i~~ll~~Pi~~~ 757 (764)
T 3p5p_A 741 EIKDYIRKVYIDPIQVG 757 (764)
T ss_dssp CHHHHHHHHHTCCCCC-
T ss_pred HHHHHHHHHHhcCCccC
Confidence 69999999999999986
No 4
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=5.6e-103 Score=838.49 Aligned_cols=384 Identities=18% Similarity=0.275 Sum_probs=358.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHhhcCCccCCchhhHHHHhHHHhcccccccccccccc
Q 011444 1 MFAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIEEKDMNALWMGKASFHR 80 (485)
Q Consensus 1 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~d~~~~~~~l~~eV~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~Kt~~yr 80 (485)
+||||+|||||++||+++|++.+.+ +.++|++||+|||++|||+++||||||+||++|++++
T Consensus 164 ~~~gE~iLdeA~~fs~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~---------- 225 (554)
T 3g4d_A 164 RVHGEDILDEAISFTTHHLSLAVAS--------LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIE---------- 225 (554)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHSTT--------CCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSST----------
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhc--------cCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCc----------
Confidence 4899999999999999999998753 4578999999999999999999999999999999986
Q ss_pred ccccccHHHHHHhhccchhhhhhhHHHHHHHHHhhhhCCC-CCcchhhhHHHHHhHHHhhhhcccCCCCchHHHHHHHHH
Q 011444 81 LSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNL-SDMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSA 159 (485)
Q Consensus 81 ~~~~~n~~lLelAkldFn~~Qs~h~~El~~l~~W~k~~~L-~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL~~ak~~ 159 (485)
.+|++||||||+|||+||++||+||+++++||+++|| .++||+|+|+++||||++| ++|+|++|.+|+++||++
T Consensus 226 ---~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~--~~feP~~s~~R~~~aK~~ 300 (554)
T 3g4d_A 226 ---SHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISG--VYFEPQYSLGRKMLTKVI 300 (554)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHH--HCCSGGGHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHH--hhCCccccHHHHHHHHHH
Confidence 6899999999999999999999999999999999999 6899999999999999999 999999999999999999
Q ss_pred HHHHHhhhhcccCCCHHHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 011444 160 ILITVADDFFDMEGSLNELKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFA 236 (485)
Q Consensus 160 ~~~fi~DD~~D~~gt~eEl~~~~~ai~rwd---~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~ 236 (485)
++++++||+||.|||+||++.||+||+||| ++.||+|||+||.+|+|++++++.++.+.+|.+.++++++.|+++++
T Consensus 301 ~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ 380 (554)
T 3g4d_A 301 AMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQ 380 (554)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 57899999999999999999999988876666899999999999999
Q ss_pred HHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCcccccc-CccchHHHHHHHHHHHhcChhhHHHHH
Q 011444 237 SWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRP-AQYDTVTKLLMLVPRLLNDIQSYQKEI 315 (485)
Q Consensus 237 a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~-~~~~~L~~~~~~i~rL~NDI~S~~kE~ 315 (485)
+|++||+|+.+|++||+||||++|.+|+|++++++++++++|+.+|++++++ +.+++|+++++.|+||+|||+||++|+
T Consensus 381 ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~ 460 (554)
T 3g4d_A 381 SYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKH 460 (554)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999976 899999999999999999999999999
Q ss_pred hcCCchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHhHhhhhhhhcccCCCCCCc-
Q 011444 316 ADGKQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDSN- 393 (485)
Q Consensus 316 ~~G~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dg~t~~- 393 (485)
++|+++|+|. ||+|+ |+|+|||+++++++|+++||+||+++++++ .+|++|+++++|++|++++||+++||||.+
T Consensus 461 ~rG~van~V~cYMke~-GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~--~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~ 537 (554)
T 3g4d_A 461 RREDDCSAIECYMEEY-GVTAQEAYDVFNKHVESAWKDLNQEFLKPT--EMPTEVLNRSLNLARVMDVLYREGDGYTYVG 537 (554)
T ss_dssp ----CCCHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHSSSC--SSCHHHHHHHHHHHHHHHHHSCC-----CCC
T ss_pred ccCCccHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 9999999999 99999 999999999999999999999999999863 699999999999999999999999999997
Q ss_pred hhHHHHHHhhhcccccC
Q 011444 394 TEMIDDVQKAFYIPLKL 410 (485)
Q Consensus 394 ~~~k~~I~~ll~~pi~~ 410 (485)
++||++|++||++|||+
T Consensus 538 ~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 538 KAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 68999999999999985
No 5
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1.2e-102 Score=837.08 Aligned_cols=384 Identities=26% Similarity=0.365 Sum_probs=365.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHhhcCCccCCchhhHHHHhHHHhcccccccccccccc
Q 011444 1 MFAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIEEKDMNALWMGKASFHR 80 (485)
Q Consensus 1 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~d~~~~~~~l~~eV~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~Kt~~yr 80 (485)
+||||+|||||++||+++|++.+.++ +.++|++||++||++|||+++||||||+||++|++++
T Consensus 161 ~~~gE~iLdeA~~Fs~~~L~~~~~~~-------~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~~---------- 223 (555)
T 3n0f_A 161 ALEGENILDEARVFAISHLKELSEEK-------IGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKE---------- 223 (555)
T ss_dssp CCTTCHHHHHHHHHHHHHHHTCCHHH-------HCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTCT----------
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHhcc-------CCchHHHHHHHHhcCCcccCchHHHHHHHHHHhcccc----------
Confidence 48999999999999999999876532 4578999999999999999999999999999999986
Q ss_pred ccccccHHHHHHhhccchhhhhhhHHHHHHHHHhhhhCCC-CCcchhhhHHHHHhHHHhhhhcccCCCCchHHHHHHHHH
Q 011444 81 LSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNL-SDMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSA 159 (485)
Q Consensus 81 ~~~~~n~~lLelAkldFn~~Qs~h~~El~~l~~W~k~~~L-~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL~~ak~~ 159 (485)
.+|++||||||+|||+||++||+||+++++||+++|| .++||+|+|+++||||++| ++|+|++|.+|+++||++
T Consensus 224 ---~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~--~~feP~~s~~R~~~aK~~ 298 (555)
T 3n0f_A 224 ---DANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVG--VAFEPQYSDCRNSVAKMF 298 (555)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHH--HCCSGGGHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHH--hhcCccchHHHHHHHHHH
Confidence 6899999999999999999999999999999999999 6999999999999999999 999999999999999999
Q ss_pred HHHHHhhhhcccCCCHHHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 011444 160 ILITVADDFFDMEGSLNELKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFA 236 (485)
Q Consensus 160 ~~~fi~DD~~D~~gt~eEl~~~~~ai~rwd---~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~ 236 (485)
++++++||+||.|||+||++.||+||+||| ++.||+|||+||.+|++++++++.++.+.+|+++.++++++|+++++
T Consensus 299 ~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ 378 (555)
T 3n0f_A 299 SFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCN 378 (555)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCcccccc-CccchHHHHHHHHHHHhcChhhHHHHH
Q 011444 237 SWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRP-AQYDTVTKLLMLVPRLLNDIQSYQKEI 315 (485)
Q Consensus 237 a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~-~~~~~L~~~~~~i~rL~NDI~S~~kE~ 315 (485)
+|++||+|+.+|++||+||||++|.+|+|++++++++++++|+.+|++++++ +.+++|+++++.|+||+|||+||++|+
T Consensus 379 ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~ 458 (555)
T 3n0f_A 379 AFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEI 458 (555)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhh
Confidence 9999999999999999999999999999999999999888899999999865 789999999999999999999999999
Q ss_pred hcCCchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHhHhhhhhhhcccCCCCCCc-
Q 011444 316 ADGKQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDSN- 393 (485)
Q Consensus 316 ~~G~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dg~t~~- 393 (485)
++|+++|+|. ||+|+ |+|+|||+++++++|+++||+||++++++ +.+|++|+++++|++|++++||+++||||.+
T Consensus 459 ~rG~vas~V~cYMke~-GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~--~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~ 535 (555)
T 3n0f_A 459 ARGETANSVSCYMRTK-GISEELATESVMNLIDETWKKMNKEKLGG--SLFAKPFVETAINLARQSHCTYHNGDAHTSPD 535 (555)
T ss_dssp TTTCCCSHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHSC--CSSCHHHHHHHHHHHHHHHHHSCCC---CCHH
T ss_pred hcCCcchHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 9999999999 99999 99999999999999999999999999986 3699999999999999999999999999997
Q ss_pred hhHHHHHHhhhccccc
Q 011444 394 TEMIDDVQKAFYIPLK 409 (485)
Q Consensus 394 ~~~k~~I~~ll~~pi~ 409 (485)
++||++|++||++|||
T Consensus 536 ~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 536 ELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 5899999999999998
No 6
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=2.8e-101 Score=824.77 Aligned_cols=383 Identities=21% Similarity=0.328 Sum_probs=360.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHhhcCCccCCchhhHHHHhHH-Hhccccccccccccc
Q 011444 1 MFAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIE-EKDMNALWMGKASFH 79 (485)
Q Consensus 1 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~d~~~~~~~l~~eV~~aL~~P~~~~~~rle~r~yI~-~Y~~~~~~~~Kt~~y 79 (485)
+||||+|||||++||+++|++.+.+ +.++|++||+|||++|||+++||||||+||+ +|++++
T Consensus 159 ~~~gE~iLdeA~~fs~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~--------- 221 (550)
T 3m00_A 159 RTHADDILEDALAFSTIHLESAAPH--------LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ--------- 221 (550)
T ss_dssp CCTTCGGGTTHHHHHHHHHHHHGGG--------CCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCT---------
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhc--------cCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcccc---------
Confidence 4899999999999999999998754 3567999999999999999999999999999 999986
Q ss_pred cccccccHHHHHHhhccchhhhhhhHHHHHHHHHhhhhCCC-CCcchhhhHHHHHhHHHhhhhcccCCCCchHHHHHHHH
Q 011444 80 RLSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNL-SDMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKS 158 (485)
Q Consensus 80 r~~~~~n~~lLelAkldFn~~Qs~h~~El~~l~~W~k~~~L-~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL~~ak~ 158 (485)
.+|++||||||+|||+||++||+||+++++||+++|| .++||+|+|+++||||++| ++|+|++|.+|+++||+
T Consensus 222 ----~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~--~~feP~~s~~R~~~aK~ 295 (550)
T 3m00_A 222 ----SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLG--VYFEPQYSQARVMLVKT 295 (550)
T ss_dssp ----TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHH--HCCSGGGHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHH--hhCCccchHHHHHHHHH
Confidence 6899999999999999999999999999999999999 6999999999999999999 99999999999999999
Q ss_pred HHHHHHhhhhcccCCCHHHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHH
Q 011444 159 AILITVADDFFDMEGSLNELKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETF 235 (485)
Q Consensus 159 ~~~~fi~DD~~D~~gt~eEl~~~~~ai~rwd---~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l 235 (485)
+++++++||+||.|||+||++.||+||+||| ++.||+|||+||.+|+|+++|++.++.+.+|.+.++++++.|++++
T Consensus 296 ~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~ 375 (550)
T 3m00_A 296 ISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIV 375 (550)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 5789999999999999999999998877666789999999999999
Q ss_pred HHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCcccccc-CccchHHHHHHHHHHHhcChhhHHHH
Q 011444 236 ASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRP-AQYDTVTKLLMLVPRLLNDIQSYQKE 314 (485)
Q Consensus 236 ~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~-~~~~~L~~~~~~i~rL~NDI~S~~kE 314 (485)
++|++||+|+++|++||+||||++|.+|+|++++.+++.+++ +.+|++++++ +.+++|+++++.|+||+|||+||++|
T Consensus 376 ~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E 454 (550)
T 3m00_A 376 RNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVE 454 (550)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHH
Confidence 999999999999999999999999999999999888886555 5699999875 78999999999999999999999999
Q ss_pred HhcCCchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHhHhhhhhhhcccC-CCCCC
Q 011444 315 IADGKQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSS-NRYDS 392 (485)
Q Consensus 315 ~~~G~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~-Dg~t~ 392 (485)
+++|+++|+|. ||+|+ |+|+|||+++++++|+++||+||+++++++ .+|++|+++++|++|++++||+++ ||||.
T Consensus 455 ~~rG~vas~V~cYMke~-GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~--~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~ 531 (550)
T 3m00_A 455 KSRGQIATGIECCMRDY-GISTKEAMAKFQNMAETAWKDINEGLLRPT--PVSTEFLTPILNLARIIEVTYIHNLDGYTH 531 (550)
T ss_dssp HHTTCTTSHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHTSSSC--SSCGGGTHHHHHHHHHHHHHTSCC-----C
T ss_pred HhcCCcccHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999 99999 999999999999999999999999999863 699999999999999999999998 99999
Q ss_pred ch-hHHHHHHhhhcccccC
Q 011444 393 NT-EMIDDVQKAFYIPLKL 410 (485)
Q Consensus 393 ~~-~~k~~I~~ll~~pi~~ 410 (485)
++ +||++|++||++|||+
T Consensus 532 ~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 532 PEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp CHHHHHHHHHHHHTCCCCC
T ss_pred ccHHHHHHHHHHhhCCCCC
Confidence 74 8999999999999985
No 7
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=7.1e-99 Score=812.00 Aligned_cols=385 Identities=24% Similarity=0.401 Sum_probs=369.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHhhcCCccCCchhhHHHHhHHHhcccccccccccccc
Q 011444 1 MFAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIEEKDMNALWMGKASFHR 80 (485)
Q Consensus 1 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~d~~~~~~~l~~eV~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~Kt~~yr 80 (485)
+||||+|||||++||++||++++.++ + ++++|++||++||++|||+++||||||+||++|++++
T Consensus 151 ~~~gE~iL~eA~~Ft~~~L~~~~~~~-~-----~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~---------- 214 (543)
T 2ong_A 151 LTEGETTLESAREFATKFLEEKVNEG-G-----VDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRP---------- 214 (543)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHSS-C-----SSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTCS----------
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcc-C-----CCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccCc----------
Confidence 48999999999999999999998752 1 2678999999999999999999999999999999997
Q ss_pred ccccccHHHHHHhhccchhhhhhhHHHHHHHHHhhhhCCCC-CcchhhhHHHHHhHHHhhhhcccCCCCchHHHHHHHHH
Q 011444 81 LSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNLS-DMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSA 159 (485)
Q Consensus 81 ~~~~~n~~lLelAkldFn~~Qs~h~~El~~l~~W~k~~~L~-~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL~~ak~~ 159 (485)
++|++||||||+|||+||++||+||+++++||+++||. ++||+|+|++++|||++| ++|+|++|.+|+++||++
T Consensus 215 ---~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a--~~feP~~s~~Rl~~aK~~ 289 (543)
T 2ong_A 215 ---DMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTG--IIEPRQHASARIMMGKVN 289 (543)
T ss_dssp ---SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHH--HTCSTTCHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHH--hccCCCccHHHHHHHHHH
Confidence 68999999999999999999999999999999999994 699999999999999999 999999999999999999
Q ss_pred HHHHHhhhhcccCCCHHHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 011444 160 ILITVADDFFDMEGSLNELKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFA 236 (485)
Q Consensus 160 ~~~fi~DD~~D~~gt~eEl~~~~~ai~rwd---~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~ 236 (485)
+|+|++||+||.+||++|++.||++|+||| ++.+|+||++||.+|++++++++.++.+.+|+++.++++++|+++++
T Consensus 290 ~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ 369 (543)
T 2ong_A 290 ALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLAD 369 (543)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCcccccc-CccchHHHHHHHHHHHhcChhhHHHHH
Q 011444 237 SWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRP-AQYDTVTKLLMLVPRLLNDIQSYQKEI 315 (485)
Q Consensus 237 a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~-~~~~~L~~~~~~i~rL~NDI~S~~kE~ 315 (485)
+|++||+|+.+|++||+||||++|.+|+|++++++++++++|..+|+++++. ..+++++++++.++||+|||+||++|+
T Consensus 370 ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~ 449 (543)
T 2ong_A 370 KYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEV 449 (543)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhcc
Confidence 9999999999999999999999999999999999999999999999999865 789999999999999999999999999
Q ss_pred hcCCchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCHhHHHHHHhHhhhhhhhcccCCCCCCc
Q 011444 316 ADGKQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHA-LMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDSN 393 (485)
Q Consensus 316 ~~G~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~-l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dg~t~~ 393 (485)
++|+++|+|. ||+|+ |+|+|||++++.++|+++||+||+++ ++++ .+|++|+++++|++|+++++|+++||||.+
T Consensus 450 ~rG~~~n~V~cyMke~-g~s~eeA~~~i~~~ie~~wk~ln~e~~l~~~--~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~ 526 (543)
T 2ong_A 450 SRGDVPKSLQCYMSDY-NASEAEARKHVKWLIAEVWKKMNAERVSKDS--PFGKDFIGCAVDLGRMAQLMYHNGDGHGTQ 526 (543)
T ss_dssp HTSCCCCHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHHHHHHHTCSSC--SSCHHHHHHHHHHHHHHHHHTSSCSTTSSS
T ss_pred ccCCccHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHeehhheeCCCCCCCc
Confidence 9999999999 99999 99999999999999999999999999 8863 699999999999999999999999999997
Q ss_pred -hhHHHHHHhhhccccc
Q 011444 394 -TEMIDDVQKAFYIPLK 409 (485)
Q Consensus 394 -~~~k~~I~~ll~~pi~ 409 (485)
++||++|++||++|||
T Consensus 527 ~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 527 HPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp CTTHHHHHHHHHTSCC-
T ss_pred cHHHHHHHHHHhccCCC
Confidence 5899999999999986
No 8
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=5.3e-99 Score=812.64 Aligned_cols=387 Identities=24% Similarity=0.343 Sum_probs=356.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHhhcCCccCCchhhHHHHhHHHhcccccccccccccc
Q 011444 1 MFAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIEEKDMNALWMGKASFHR 80 (485)
Q Consensus 1 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~d~~~~~~~l~~eV~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~Kt~~yr 80 (485)
+||||+|||||++||++||++.+.+++ |.++++|++||+|||++|||+++||||||+||++|++++
T Consensus 155 ~~~gE~iL~eA~~Ft~~~L~~~~~~~~----~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~---------- 220 (549)
T 1n1b_A 155 LRKGEDTLELAREFATKCLQKKLDEGG----NEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRP---------- 220 (549)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHTC----------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHCT----------
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhccc----ccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhcccc----------
Confidence 489999999999999999999986531 334678999999999999999999999999999999987
Q ss_pred ccccccHHHHHHhhccchhhhhhhHHHHHHHHHhhhhCCCC-CcchhhhHHHHHhHHHhhhhcccCCCCchHHHHHHHHH
Q 011444 81 LSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNLS-DMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSA 159 (485)
Q Consensus 81 ~~~~~n~~lLelAkldFn~~Qs~h~~El~~l~~W~k~~~L~-~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL~~ak~~ 159 (485)
++|++||||||+|||+||++||+||+++++||+++||. ++||+|+|++++|||++| ++|+|++|.+|+++||++
T Consensus 221 ---~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a--~~feP~~s~~Rl~~aK~~ 295 (549)
T 1n1b_A 221 ---DMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVG--MFEPHQHGYQRKMAATII 295 (549)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHH--HCCSTTCHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHH--HhcCCCCcHHHHHHHHHH
Confidence 68999999999999999999999999999999999995 699999999999999999 999999999999999999
Q ss_pred HHHHHhhhhcccCCCHHHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 011444 160 ILITVADDFFDMEGSLNELKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFA 236 (485)
Q Consensus 160 ~~~fi~DD~~D~~gt~eEl~~~~~ai~rwd---~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~ 236 (485)
+|+|++||+||.+||++|++.||++|+||| ++.+|+||++||.+|++++++++.++.+.+|+++..+++++|+++++
T Consensus 296 ~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ 375 (549)
T 1n1b_A 296 VLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVE 375 (549)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 35799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccc-ccc-CccchHHHHHHHHHHHhcChhhHHHH
Q 011444 237 SWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYK-FRP-AQYDTVTKLLMLVPRLLNDIQSYQKE 314 (485)
Q Consensus 237 a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev-~~~-~~~~~L~~~~~~i~rL~NDI~S~~kE 314 (485)
+|++||+|+.+|++||+||||++|.+|+|++++++++++++|..+|+++ +++ ..+++++++++.++||+|||+||++|
T Consensus 376 ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E 455 (549)
T 1n1b_A 376 AYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFE 455 (549)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhh
Confidence 9999999999999999999999999999999999999999999999998 765 68899999999999999999999999
Q ss_pred HhcCCchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHhHhhhhhhhcccCCCCCCc
Q 011444 315 IADGKQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDSN 393 (485)
Q Consensus 315 ~~~G~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dg~t~~ 393 (485)
+++|+++|+|. ||+|+ |+|+|||+++++++|+++||+||+++++++ .+|++|+++++|++|++++||+++||||.+
T Consensus 456 ~~rG~v~n~V~cyMke~-g~s~eeA~~~i~~~i~~~wk~ln~e~l~~~--~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~ 532 (549)
T 1n1b_A 456 LARGDVPKTIQCYMKET-NASEEEAVEHVKFLIREAWKDMNTAIAAGY--PFPDGMVAGAANIGRVAQFIYLHGDGFGVQ 532 (549)
T ss_dssp ----CCCCHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHTCC--SSCHHHHHHHHHHHHHHHHHTTTSCCC---
T ss_pred hccCCccHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHeeehheeCCCCCCCC
Confidence 99999999998 99999 999999999999999999999999999863 699999999999999999999999999997
Q ss_pred -hhHHHHHHhhhccccc
Q 011444 394 -TEMIDDVQKAFYIPLK 409 (485)
Q Consensus 394 -~~~k~~I~~ll~~pi~ 409 (485)
++||++|++||++|||
T Consensus 533 ~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 533 HSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp -CHHHHHHHHHHTSCCC
T ss_pred cHHHHHHHHHHhcCCCC
Confidence 4799999999999996
No 9
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=1.9e-98 Score=810.66 Aligned_cols=383 Identities=25% Similarity=0.389 Sum_probs=348.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHhhcCCccCCchhhHHHHhHHHhcccccccccccccc
Q 011444 1 MFAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIEEKDMNALWMGKASFHR 80 (485)
Q Consensus 1 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~d~~~~~~~l~~eV~~aL~~P~~~~~~rle~r~yI~~Y~~~~~~~~Kt~~yr 80 (485)
+||||+|||||++||++||++++.+. +.++|++||++||++|||+++||||||+||++|++++
T Consensus 179 ~~~gE~iLdeA~~Ft~~~L~~~~~~~-------~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~---------- 241 (569)
T 2j5c_A 179 SAQGEETLRLARDFATKFLQKRVLVD-------KDINLLSSIERALELPTHWRVQMPNARSFIDAYKRRP---------- 241 (569)
T ss_dssp CCTTCHHHHHHHHHHHHTTSSCC-----------CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTCT----------
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhhc-------CCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccCc----------
Confidence 48999999999999999999887531 2678999999999999999999999999999999997
Q ss_pred ccccccHHHHHHhhccchhhhhhhHHHHHHHHHhhhhCCCC-CcchhhhHHHHHhHHHhhhhcccCCCCchHHHHHHHHH
Q 011444 81 LSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNLS-DMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSA 159 (485)
Q Consensus 81 ~~~~~n~~lLelAkldFn~~Qs~h~~El~~l~~W~k~~~L~-~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL~~ak~~ 159 (485)
++|++||||||+|||+||++||+||+++++||+++||. ++||+|+|++++|||++| ++|+|++|.+|+++||++
T Consensus 242 ---~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a--~~feP~~S~~Rl~~aK~~ 316 (569)
T 2j5c_A 242 ---DMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTG--VVERRQHGYERIMLTKIN 316 (569)
T ss_dssp ---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHH--HCCCGGGHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH--hhcCCCccHHHHHHHHHH
Confidence 68999999999999999999999999999999999994 699999999999999999 999999999999999999
Q ss_pred HHHHHhhhhcccCCCHHHHHHHHHHHHhhc---CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 011444 160 ILITVADDFFDMEGSLNELKSLADAVKRWD---GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFA 236 (485)
Q Consensus 160 ~~~fi~DD~~D~~gt~eEl~~~~~ai~rwd---~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~ 236 (485)
+|+|++||+||.+||++|++.||++|+||| ++.+|+||++||.+|++++++++.++.+.+|+++.++++++|+++++
T Consensus 317 ~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ 396 (569)
T 2j5c_A 317 ALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIE 396 (569)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 46799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCcccccc-CccchHHHHHHHHHHHhcChhhHHHHH
Q 011444 237 SWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRP-AQYDTVTKLLMLVPRLLNDIQSYQKEI 315 (485)
Q Consensus 237 a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~-~~~~~L~~~~~~i~rL~NDI~S~~kE~ 315 (485)
+|++||+|+.+|++||+||||++|.+|+|++++++++++++|..+|+++++. ..+++++++++.++||+|||+||++|+
T Consensus 397 ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~ 476 (569)
T 2j5c_A 397 SYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEV 476 (569)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhc
Confidence 9999999999999999999999999999999999999999999999999865 789999999999999999999999999
Q ss_pred hcCCchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHhHhhhhhhhcccC-CCCCCc
Q 011444 316 ADGKQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSS-NRYDSN 393 (485)
Q Consensus 316 ~~G~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~ 393 (485)
++|+++|+|. ||+|+ |+|+|||++++.++|+++||+||++|++ + .+|++|+++++|++|+++++|+++ ||||.+
T Consensus 477 ~rG~v~s~V~cyMke~-g~s~eeA~~~i~~~ie~~wk~ln~e~l~-~--~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~ 552 (569)
T 2j5c_A 477 ERGDVPKSVQCYMNEK-NASEEEAREHVRSLIDQTWKMMNKEMMT-S--SFSKYFVEVSANLARMAQWIYQHESDGFGMQ 552 (569)
T ss_dssp -----CCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHHHHH-C--CSCHHHHHHHHHHHHHHHHHTGGGSCTTC-C
T ss_pred ccCCccHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHhc-c--CCCHHHHHHHHHHHheeehhccCCCcCCCCc
Confidence 9999999999 99999 9999999999999999999999999998 4 599999999999999999999999 999997
Q ss_pred -hhHHHHHHhhhccccc
Q 011444 394 -TEMIDDVQKAFYIPLK 409 (485)
Q Consensus 394 -~~~k~~I~~ll~~pi~ 409 (485)
++||++|++||++|||
T Consensus 553 ~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 553 HSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp CCHHHHHHHHHHTSCCC
T ss_pred hHHHHHHHHHHhccCCC
Confidence 5899999999999996
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=8.5e-79 Score=667.37 Aligned_cols=353 Identities=19% Similarity=0.335 Sum_probs=316.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHhhcCCccCCchhhHHHHhHHHhcc-ccccccccccc
Q 011444 1 MFAEEYELQEARSFARKSLEKTMTTGSRGPDDVTFTSFRKVIEHELDFPWLTRMEHLEYRMWIEEKDM-NALWMGKASFH 79 (485)
Q Consensus 1 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~d~~~~~~~l~~eV~~aL~~P~~~~~~rle~r~yI~~Y~~-~~~~~~Kt~~y 79 (485)
+||||+|||||++||+++|++.+.+++..|||+++++|++||+|||++|||+++||||||+||++|++ +++||||| +|
T Consensus 350 ~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt-~y 428 (727)
T 3pya_A 350 AFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKT-LY 428 (727)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSS-EE
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhh-hc
Confidence 48999999999999999999998877889999999999999999999999999999999999999996 47999999 78
Q ss_pred cccccccHHHHHHhhccchhhhhhhHHHHHHHHHhhhhCCCCCcchhhhHHHHHhHHHhhhhcccCCCCchHHHHHHHHH
Q 011444 80 RLSCSYNDKLMQLAIQNYGFRQLVYKRELEELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRLILAKSA 159 (485)
Q Consensus 80 r~~~~~n~~lLelAkldFn~~Qs~h~~El~~l~~W~k~~~L~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL~~ak~~ 159 (485)
|||+.+|++||||||+|||+||++||+||++++|||+++||.++||+|+|++|||||++| ++|+|++|.+|+++||.+
T Consensus 429 r~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~l~faRdr~ve~Yfw~~~--~~feP~~s~~R~~~aK~~ 506 (727)
T 3pya_A 429 RMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVRRSELLECYYLAAA--TIFESERSHERMVWAKSS 506 (727)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTCCHHHHHHHHHHHHT--TSCCGGGHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCcccCCchhhHHHHHHHHHHh--ccCCchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998899999999999999999 999999999999999999
Q ss_pred HHHHHhhhhcccCCCHHHHHHHHHHHHhhcCC---------C------CCCc--hhhHHHHHHHHHHHHHHHHHhhcCcc
Q 011444 160 ILITVADDFFDMEGSLNELKSLADAVKRWDGK---------G------LSGH--SKTIFGALDGLVSELAEKHLQQQGRD 222 (485)
Q Consensus 160 ~~~fi~DD~~D~~gt~eEl~~~~~ai~rwd~~---------~------lpe~--~k~~~~al~d~~~ei~~~~~~~~g~~ 222 (485)
++++++||+||.|| ||++.||++|+|||.. . .|+| |++||.+|++++++++.++.+.||++
T Consensus 507 ~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~ 584 (727)
T 3pya_A 507 VLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRD 584 (727)
T ss_dssp HHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999 9999999999999942 1 2777 89999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCccchHHHHHHHHH
Q 011444 223 ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVP 302 (485)
Q Consensus 223 ~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~ 302 (485)
+.+++++.|.+|+++|+.|++ + +| + ..++.++.+++ |..+++ ++.+|+|..|.++++.||
T Consensus 585 v~~~l~~~W~~~l~s~~~Ea~-~--------~E----A--ellv~~I~l~s----G~~l~e-~l~~~ey~~L~~ltn~ic 644 (727)
T 3pya_A 585 VNNLLYLSWGDWMEKWKLYGD-E--------GE----G--ELMVKMIILMK----NNDLTN-FFTHTHFVRLAEIINRIC 644 (727)
T ss_dssp CHHHHHHHHHHHHHHHHHHSS-C--------CH----H--HHHHHHHHHHS----SSCGGG-GGSSHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHhcc-c--------cc----e--eeeeeeeecCC----CcchHh-hccChhHHHHHHHHHHHh
Confidence 999999999999999999997 2 33 1 14555544433 888999 889999999999999999
Q ss_pred HHhcChhhHHHHHhcCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHhHhhhhhh
Q 011444 303 RLLNDIQSYQKEIADGKQNSVILYLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQM 382 (485)
Q Consensus 303 rL~NDI~S~~kE~~~G~~~n~V~ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~~~~~~~ln~aR~~~~ 382 (485)
||+||+.+|++|+ .+++...|+..|++|++++++.+++.+|++| |+.++++.
T Consensus 645 rllndl~~~~~E~-----------------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ks 696 (727)
T 3pya_A 645 LPRQYLKARRNDE-----------------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKA 696 (727)
T ss_dssp CCCC------CHH-----------------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHH
T ss_pred HHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHH
Confidence 9999999999876 3578899999999999999987655899999 66667777
Q ss_pred hcccCCCCCCchhHHHHHHhhhccccc
Q 011444 383 FFHSSNRYDSNTEMIDDVQKAFYIPLK 409 (485)
Q Consensus 383 ~Y~~~Dg~t~~~~~k~~I~~ll~~pi~ 409 (485)
||+. ||++++ |+.||.+|++|||-
T Consensus 697 FYy~--ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 697 FYYF--ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HHHH--HHHTTS-CHHHHHHHHHSCCC
T ss_pred HHhh--hcCCHH-HHHHHHHHHcCccc
Confidence 7875 999988 99999999999986
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.8e-50 Score=412.09 Aligned_cols=258 Identities=21% Similarity=0.175 Sum_probs=238.7
Q ss_pred ccchhhhhhhHHHHH-HHHHhhhhCCCCCcchhhhHHHHHhHHHhhhhcccCCCCchHHH-HHHHHHHHHHHhhhhcccC
Q 011444 95 QNYGFRQLVYKRELE-ELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRL-ILAKSAILITVADDFFDME 172 (485)
Q Consensus 95 ldFn~~Qs~h~~El~-~l~~W~k~~~L~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL-~~ak~~~~~fi~DD~~D~~ 172 (485)
++|+..+++|.+|++ ++.+||+++|+.+.+++|+|++++|||.++ ++++|+++.+|+ ++||+++|+|++||+||.+
T Consensus 9 ~p~p~~~~p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~--~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~ 86 (337)
T 1ps1_A 9 IPLPGRQSPDHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLA--SRFYPHATGADLDLGVDLMSWFFLFDDLFDGP 86 (337)
T ss_dssp CCSCCCCCTTHHHHHHSTTHHHHHTTSCCSHHHHHHHHTTCHHHHH--HHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHHH--HHHCCCCCHHHHHHHHHHHHHHHHHhhccCCc
Confidence 679999999999995 588999999997679999999999999999 999999999999 9999999999999999998
Q ss_pred --CCHHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhHhcCCCC
Q 011444 173 --GSLNELKSLADAVKRWDGKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFASWLTEATWSKSGRT 250 (485)
Q Consensus 173 --gt~eEl~~~~~ai~rwd~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~a~l~EA~w~~~g~v 250 (485)
|+++|++.|++++.+|+...+|+++++++.++.+++++++.. .++....++++.|.+|+.++++||+|+.+|++
T Consensus 87 ~~~~~ee~~~~~~~l~~~~~~~~p~~~~~~~~~l~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~ 162 (337)
T 1ps1_A 87 RGENPEDTKQLTDQVAAALDGPLPDTAPPIAHGFADIWRRTCEG----MTPAWCARSARHWRNYFDGYVDEAESRFWNAP 162 (337)
T ss_dssp GGGCHHHHHHHHHHHHGGGTSCCCTTSCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 599999999999999986678999999999999999999754 45567899999999999999999999999999
Q ss_pred C-CHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChhhHHHHHhcCCchhHHH-HHh
Q 011444 251 P-SMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSYQKEIADGKQNSVIL-YLR 328 (485)
Q Consensus 251 P-sleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S~~kE~~~G~~~n~V~-ymk 328 (485)
| |++||+++|++|+|+.++++++++++|..+|++++.+|.+++|.+++++++||+|||+||+||+++|+++|+|. ||+
T Consensus 163 P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~ 242 (337)
T 1ps1_A 163 CDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRR 242 (337)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHH
T ss_pred CCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011444 329 ENPEADIEDSVAYVRELIATKEKELLEHALM 359 (485)
Q Consensus 329 e~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~ 359 (485)
++ |+|+|||++++.+++++.|++||++.-+
T Consensus 243 ~~-g~s~eeA~~~v~~~i~~~~~~~~~~~~~ 272 (337)
T 1ps1_A 243 EH-GWSKSRSVSHMQNEVRARLEQYLLLESC 272 (337)
T ss_dssp HH-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 9999999999999999999999998743
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=1.4e-47 Score=384.20 Aligned_cols=249 Identities=14% Similarity=0.088 Sum_probs=230.0
Q ss_pred ccchhhhhhhHHHH-HHHHHhhhhCCCCCcchhhhHHHHHhHHHhhhhcccCCCCchHHH-HHHHHHHHHHHhhhhcccC
Q 011444 95 QNYGFRQLVYKREL-EELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRL-ILAKSAILITVADDFFDME 172 (485)
Q Consensus 95 ldFn~~Qs~h~~El-~~l~~W~k~~~L~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL-~~ak~~~~~fi~DD~~D~~ 172 (485)
.+|+...+||++|+ +++.+||+++|+.+.+++|+|++++|||.++ ++++|+++.+|+ ++||+++|+|++||+||.
T Consensus 5 ~p~p~~~~P~~~~~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~--~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~- 81 (300)
T 1di1_A 5 TQWSYLCHPRVKEVQDEVDGYFLENWKFPSFKAVRTFLDAKFSEVT--CLYFPLALDDRIHFACRLLTVLFLIDDVLEH- 81 (300)
T ss_dssp CSCCCCCCTTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHH--HHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCCcccCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCcchhh--hhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-
Confidence 57888999999999 5688999999997779999999999999999 999999999999 999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhc-CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCC
Q 011444 173 GSLNELKSLADAVKRWD-GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFASWLTEATWSKSGRTP 251 (485)
Q Consensus 173 gt~eEl~~~~~ai~rwd-~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~a~l~EA~w~~~g~vP 251 (485)
|+.+|++.+++++.+|+ .+.+|+++++++.+++|++++++..+ + .+.++.|+.++.++. |++|+.+|++|
T Consensus 82 ~~~~e~~~~~~~~~~~~~~~~lp~~~~~~~~~l~d~~~~~~~~~-~-------~~~~~~~~~~~~~~~-ea~~~~~~~~P 152 (300)
T 1di1_A 82 MSFADGEAYNNRLIPISRGDVLPDRTKPEEFILYDLWESMRAHD-A-------ELANEVLEPTFVFMR-AQTDRARLSIH 152 (300)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCCTTCHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHH-TTTCCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHhhC-h-------HHHHHHHHHHHHHHH-HHhccccCCCC
Confidence 78999999999999997 66789999999999999999998764 1 345566888999986 89999999999
Q ss_pred CHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChhhHHHHHhcCC--------chhH
Q 011444 252 SMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSYQKEIADGK--------QNSV 323 (485)
Q Consensus 252 sleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S~~kE~~~G~--------~~n~ 323 (485)
|++||+++|++|+|+.+++.++++++|..+|+++++ .+++|++++++++||+|||+||+||+++|+ ++|+
T Consensus 153 s~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~--~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~ 230 (300)
T 1di1_A 153 ELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQ--DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSA 230 (300)
T ss_dssp SHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH--TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCH
T ss_pred CHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchh
Confidence 999999999999999999999999999999999998 589999999999999999999999999998 6699
Q ss_pred HH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011444 324 IL-YLRENPEADIEDSVAYVRELIATKEKELLEHAL 358 (485)
Q Consensus 324 V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l 358 (485)
|. ||+++ |+|+|||++++.+++++.|++|++..-
T Consensus 231 V~~~m~~~-g~s~eeA~~~~~~~i~~~~~~~~~~~~ 265 (300)
T 1di1_A 231 VKVLAEES-KLGIPATKRVLWSMTREWETVHDEIVA 265 (300)
T ss_dssp HHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99998 999999999999999999999999874
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=2.8e-46 Score=378.43 Aligned_cols=249 Identities=14% Similarity=0.113 Sum_probs=226.3
Q ss_pred ccchhhhhhhHHHH-HHHHHhhhhCCCCCcchhhhHHHHHhHHHhhhhcccCCCCchHHH-HHHHHHHHHHHhhhhcccC
Q 011444 95 QNYGFRQLVYKREL-EELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRL-ILAKSAILITVADDFFDME 172 (485)
Q Consensus 95 ldFn~~Qs~h~~El-~~l~~W~k~~~L~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL-~~ak~~~~~fi~DD~~D~~ 172 (485)
.+|+...+||++|+ +++.+||+++|+...+++|+|++++|||.++ ++++|+++.+|+ ++||+++|+|++||+||.
T Consensus 19 ~p~p~~~~p~~~e~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~--~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~- 95 (320)
T 3bny_A 19 STFQPLCHPLVEEVSKEVDGYFLQHWNFPNEKARKKFVAAGFSRVT--CLYFPKALDDRIHFACRLLTVLFLIDDLLEY- 95 (320)
T ss_dssp CSCCCCCCTTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHH--HHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHcCCCCChHHHHHHHhcCchhhH--hhhCCCCCHHHHHHHHHHHHHHHHhhccccc-
Confidence 68999999999999 5688999999996559999999999999999 999999999999 999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhc-CCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCC
Q 011444 173 GSLNELKSLADAVKRWD-GKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFASWLTEATWSKSGRTP 251 (485)
Q Consensus 173 gt~eEl~~~~~ai~rwd-~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~a~l~EA~w~~~g~vP 251 (485)
|+.+|++.|++++.+|+ .+.+|+++++++.+++|++++++..+ + .+.++.|+.++ ++++|++|+.+|++|
T Consensus 96 ~~~~e~~~~~~~l~~~~~~~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~P 166 (320)
T 3bny_A 96 MSFEEGSAYNEKLIPISRGDVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPM 166 (320)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCC
T ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCC
Confidence 78999999999999997 66789999999999999999998653 1 23344455566 699999999999999
Q ss_pred CHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChhhHHHHHhcCC--------chhH
Q 011444 252 SMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSYQKEIADGK--------QNSV 323 (485)
Q Consensus 252 sleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S~~kE~~~G~--------~~n~ 323 (485)
|++||+++|++|+|+.+++.++++++|..+|+++++ .+++|++++++++||+|||+||+||+++|+ ++|+
T Consensus 167 s~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~--~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~ 244 (320)
T 3bny_A 167 GLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQ--RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTS 244 (320)
T ss_dssp CHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH--HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSH
T ss_pred CHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccch
Confidence 999999999999999999999999999999999988 589999999999999999999999999998 7799
Q ss_pred HH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011444 324 IL-YLRENPEADIEDSVAYVRELIATKEKELLEHAL 358 (485)
Q Consensus 324 V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l 358 (485)
|. ||+++ |+|+|||++++.+++++.++++++..-
T Consensus 245 V~~~m~~~-g~s~eeA~~~~~~~i~~~~~~~~~l~~ 279 (320)
T 3bny_A 245 VQILAQEA-DVTAEAAKRVLFVMCREWELRHQLLVA 279 (320)
T ss_dssp HHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 99998 999999999999999999999998764
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=3.9e-46 Score=387.04 Aligned_cols=257 Identities=17% Similarity=0.138 Sum_probs=238.5
Q ss_pred ccchhhhhhhHHHH-HHHHHhhhhCCCCCcchhhhHHHHHhHHHhhhhcccCCCCchHHH-HHHHHHHHHHHhhhhccc-
Q 011444 95 QNYGFRQLVYKREL-EELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRL-ILAKSAILITVADDFFDM- 171 (485)
Q Consensus 95 ldFn~~Qs~h~~El-~~l~~W~k~~~L~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL-~~ak~~~~~fi~DD~~D~- 171 (485)
.+|+...+||.+++ +++.+|++++|+...+++|+|+++++||.++ ++++|+++.+|| ++||+++|+|++||+||.
T Consensus 49 ~pfp~~~nP~~~~v~~~~~~W~~~~gl~~~~~~r~r~~~~~~~~la--a~~~P~as~erL~l~a~~~~w~f~~DD~~D~~ 126 (382)
T 3kb9_A 49 AAFPRQLHPYWPKLQETTRTWLLEKRLMPADKVEEYADGLCYTDLM--AGYYLGAPDEVLQAIADYSAWFFVWDDRHDRD 126 (382)
T ss_dssp HHSCCCCCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHCHHHHH--HTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHHH--HHhCCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 57899999999999 5799999999997668999999999999999 999999999999 999999999999999997
Q ss_pred -CC-CHHHHHHHHHHHHhh-cC-CCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhHhcC
Q 011444 172 -EG-SLNELKSLADAVKRW-DG-KGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFASWLTEATWSKS 247 (485)
Q Consensus 172 -~g-t~eEl~~~~~ai~rw-d~-~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~a~l~EA~w~~~ 247 (485)
+| ++++++.+++++.++ +. ..+|+++++++.++.+++++++..+ +.....++++.|++++++|++||+|+.+
T Consensus 127 ~~g~~~~~~~~~~~~l~~~l~~~~~~p~~~~p~~~al~dl~~~~~~~~----~~~~~~r~~~~~~~~~~a~l~Ea~w~~~ 202 (382)
T 3kb9_A 127 IVHGRAGAWRRLRGLLHTALDSPGDHLHHEDTLVAGFADSVRRLYAFL----PATWNARFARHFHTVIEAYDREFHNRTR 202 (382)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHSCGGGTTCSSHHHHHHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45 899999999999887 32 2258889999999999999997432 3346899999999999999999999999
Q ss_pred CCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChhhHHHHHhcCCchhHHH-H
Q 011444 248 GRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSYQKEIADGKQNSVIL-Y 326 (485)
Q Consensus 248 g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S~~kE~~~G~~~n~V~-y 326 (485)
|++||++||+++|++|+|+.+++.++++++|..+|++++.+|.+++|++++++++||+|||+||+||+++|+++|+|. |
T Consensus 203 g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~ 282 (382)
T 3kb9_A 203 GIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKHPAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISL 282 (382)
T ss_dssp TCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred CCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011444 327 LRENPEADIEDSVAYVRELIATKEKELLEHAL 358 (485)
Q Consensus 327 mke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l 358 (485)
|+++ |+|+|||++++.+++++.|++|++..-
T Consensus 283 m~~~-g~s~eeA~~~v~~~i~~~~k~~~~~~~ 313 (382)
T 3kb9_A 283 ITHH-SLTLEEAIGEVRRRVEECITEFLAVER 313 (382)
T ss_dssp HHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 999999999999999999999998543
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=4.9e-36 Score=314.68 Aligned_cols=256 Identities=15% Similarity=0.100 Sum_probs=209.1
Q ss_pred ccchhhhhhhHHHH-HHHHHhhhhCCCCCcchhhhHHHHHhHHHhhhhcccCCCC-chHHH-HHHHHHHHHHHhhhh-cc
Q 011444 95 QNYGFRQLVYKREL-EELKRWSRDNNLSDMGFGREKTTYCYFATAAAIGVSLPYD-SHVRL-ILAKSAILITVADDF-FD 170 (485)
Q Consensus 95 ldFn~~Qs~h~~El-~~l~~W~k~~~L~~l~~aR~R~~e~yf~~~a~~~~~eP~~-s~~RL-~~ak~~~~~fi~DD~-~D 170 (485)
.+|....++|.+|+ +++..|..++++..-+..|+++..+.|..++ ++++|.+ +.++| ++++|++|+|++||+ +|
T Consensus 118 ~pfp~~inP~~~ev~~~~~~W~~~~~~l~~~~~~~~~~~~~~~lla--a~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D 195 (433)
T 3v1v_A 118 HPVPEPDPVRVEEVSRRIKRWAEDEVQLYPEEWEGQFDGFSVGRYM--VGCHPDAPTVDHLMLATRLMVAENAVDDCYCE 195 (433)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTSCCCC----CCSCHHHHHHHH--HHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCHHHHH--HHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 48899999999999 5799999998763334457778888889988 8999999 89999 999999999999999 58
Q ss_pred cCC-CHHH-HHHHHHHHHhh-c-CCCCCC---------chhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 011444 171 MEG-SLNE-LKSLADAVKRW-D-GKGLSG---------HSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFAS 237 (485)
Q Consensus 171 ~~g-t~eE-l~~~~~ai~rw-d-~~~lpe---------~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~a 237 (485)
..| +.+. ...+..+- +. + .....+ ...++..++++++++++..+ +.....++++.|++|+++
T Consensus 196 ~~g~s~~~~~~~l~~a~-~~~d~l~~~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a----~~~q~~r~~~~~~~~~~a 270 (433)
T 3v1v_A 196 DHGGSPVGLGGRLLLAH-TAIDHFHSTAEYTPTWQASLAADAPRRAYDSAMGYFVRAA----TPSQSDRYRHDMARLHLG 270 (433)
T ss_dssp ----CCTTHHHHHHHHH-TTTSCCCCCTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhHHHHHHHH-HHHHhhhcccCCCCccccccCCchHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHH
Confidence 754 3222 12222210 11 1 111111 12367899999999998654 334689999999999999
Q ss_pred HHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChhhHHHHHhc
Q 011444 238 WLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSYQKEIAD 317 (485)
Q Consensus 238 ~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S~~kE~~~ 317 (485)
|++||+|+..|++||+|||+++|+.| |+.+++.++++++|..+|+++++++.+++|.+++++++||+|||+||+||+++
T Consensus 271 ~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~ 349 (433)
T 3v1v_A 271 YLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHARPDMQRVIALAGNATTIVNDLYSYTKELNS 349 (433)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTSHHHHHHHHHHHHHHHHHHHHHSHHHHTTS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhCchHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 99999999999999999999999999 77777788899999999999999999999999999999999999999999999
Q ss_pred C-CchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011444 318 G-KQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALM 359 (485)
Q Consensus 318 G-~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~ 359 (485)
| +++|+|. ||+++ |+|+|||++++.+++++.+++|.+..-+
T Consensus 350 gg~~~N~V~~~mke~-g~S~eeA~~~v~~~i~~~~~~F~~~~~~ 392 (433)
T 3v1v_A 350 PGRHLNLPVVIAERE-QLCERDAYLKAVEVHNELQHSFEAAAAD 392 (433)
T ss_dssp SSCCCCHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 6889998 99998 9999999999999999999998876543
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.89 E-value=2.5e-22 Score=206.73 Aligned_cols=269 Identities=13% Similarity=0.086 Sum_probs=197.9
Q ss_pred ccchhhhhhhHHHHHHHHHhhhhCC------------CCCcchhhhHHHHHhHHHhhhhcccCCCCchHHH-HHHHHHHH
Q 011444 95 QNYGFRQLVYKRELEELKRWSRDNN------------LSDMGFGREKTTYCYFATAAAIGVSLPYDSHVRL-ILAKSAIL 161 (485)
Q Consensus 95 ldFn~~Qs~h~~El~~l~~W~k~~~------------L~~l~~aR~R~~e~yf~~~a~~~~~eP~~s~~RL-~~ak~~~~ 161 (485)
++|+.-.- ..+|-.+..+|..+.| |..-+...++...+-.+ ++ ++++|+++.+.+ ++++|++|
T Consensus 20 i~y~~~~~-~~e~r~~~l~w~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~t~~~-la--ar~YP~a~~e~l~liad~~~~ 95 (374)
T 1yyq_A 20 IRYRDSNY-TREERIENLHYAYNKAAHHFAQPRQQQLLKVDPKRLQASLQTIVG-MV--VYSWAKVSKECMADLSIHYTY 95 (374)
T ss_dssp TTCCCCSC-CHHHHHHHHHHHHHHHHHHHTSHHHHHHSCCCHHHHHHHHHHHHH-HH--HHHSTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHhccchhcccccccccccCHHHHHHHHHHHHH-HH--hhcCCCCCHHHHHHHHHHHHH
Confidence 44444322 3344456779999999 53334556777777777 56 799999999999 99999999
Q ss_pred HHHhhhhcccCCCHHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH
Q 011444 162 ITVADDFFDMEGSLNELKSLADAVKRWDGKGLSGHSKTIFGALDGLVSELAEKHLQQQGRDITNDLKDIWYETFASWLTE 241 (485)
Q Consensus 162 ~fi~DD~~D~~gt~eEl~~~~~ai~rwd~~~lpe~~k~~~~al~d~~~ei~~~~~~~~g~~~~~~l~~~w~~~l~a~l~E 241 (485)
+|++||.+|..+ +++..+.+.+.+ +-|. -.|+..++.|++.++... -|+.+..++.++|.+|+.++.+|
T Consensus 96 ~F~lDD~~d~~~--~~l~~~~~~ll~----G~~~-~~Pl~~al~dl~~rl~~~----~~p~~~~rf~~s~~~~~~a~~~E 164 (374)
T 1yyq_A 96 TLVLDDSKDDPY--PTMVNYFDDLQA----GREQ-AHPWWALVNEHFPNVLRH----FGPFCSLNLIRSTLDFFEGCWIE 164 (374)
T ss_dssp HHHHTTCCSCSH--HHHTTHHHHHHH----TCCC-SSHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccCcH--HHHHHHHHHHhc----CCCC-CChHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998753 666667666543 2222 247889999999998743 35567899999999999999999
Q ss_pred HhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCcccc----ccCccchHHHHHHHHHHHhcChhhHHHHHh-
Q 011444 242 ATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKF----RPAQYDTVTKLLMLVPRLLNDIQSYQKEIA- 316 (485)
Q Consensus 242 A~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~----~~~~~~~L~~~~~~i~rL~NDI~S~~kE~~- 316 (485)
+.. .+..|+.++|...++.++|+.-. +.+..+|..++ ..+.+..++....+++.|+|||+||.||..
T Consensus 165 a~n--~~~~p~~~~Y~~~rR~~sG~~E~------~~~~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~ 236 (374)
T 1yyq_A 165 QYN--FGGFPGSHDYPQFLRRMNGLGHC------VGASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDD 236 (374)
T ss_dssp TTC--CCCCTTCTTHHHHHHHHHHCHHH------HHHTTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred Hhc--cCCCCCHHHHHHHHHhhccHHHH------HHHhhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhc
Confidence 874 77799999999998888887432 22233444443 346678888899999999999999999998
Q ss_pred cCCchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHhHHHHHHhHhhhhhhhcccCCCCCC
Q 011444 317 DGKQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDS 392 (485)
Q Consensus 317 ~G~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dg~t~ 392 (485)
.|+.+|+|. ++.++ |+|.+||++++.+++.....++.+ .+.. ..| ..++.+-+..|...........|..
T Consensus 237 ~Gd~~NlV~vl~~~~-g~S~~eAl~~v~~~~~~~~~r~~~-~L~~---~~~-~~l~al~~~irG~l~Wh~~t~RYrl 307 (374)
T 1yyq_A 237 ERDQISLVKNYVVSD-EISLHEALEKLTQDTLHSSKQMVA-VFSD---KDP-QVMDTIECFMHGYVTWHLCDRRFRL 307 (374)
T ss_dssp SSCCCCHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHH-HHSS---SCH-HHHHHHHHHHHHHHHHHHHCGGGCT
T ss_pred cCCccchhhhehhcC-CCCHHHHHHHHHHHHHHHHHHHHH-Hhcc---CCH-HHHHHHHHHHhHhHHHHhcCCCcCh
Confidence 499999999 88887 999999999999999988888755 3321 233 3455555555554433333334443
No 17
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=81.47 E-value=39 Score=32.50 Aligned_cols=202 Identities=14% Similarity=0.075 Sum_probs=102.1
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHhhcCCCCCC-----chhhHHHHHHHHHHHHHHHHH
Q 011444 142 GVSLPYDSHVRLILAKSAILITVADDFFDMEGSLNELKSLADAVKRWDGKGLSG-----HSKTIFGALDGLVSELAEKHL 216 (485)
Q Consensus 142 ~~~eP~~s~~RL~~ak~~~~~fi~DD~~D~~gt~eEl~~~~~ai~rwd~~~lpe-----~~k~~~~al~d~~~ei~~~~~ 216 (485)
+.+-|. ..|-.+.-+-.+.-.+||+-|....+.+++.+-+.+++-- .+-|. ...|+..+|.+++.+..
T Consensus 32 ~~~Lp~--~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~-~g~~~~~~~~~~~pv~~al~~~~~~~~---- 104 (293)
T 3acx_A 32 FDLLPE--DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIE-KYPYEYHHFQSDRRIMMALQHVAQHKN---- 104 (293)
T ss_dssp HTTSCH--HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHH-HCTTSCCCCSSCHHHHHHHHHHHHHSC----
T ss_pred HHhCCH--HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHh-CCCCcccCCCCCCHHHHHHHHHHHHhC----
Confidence 345664 3444444455667789999998654444555555444321 11110 13477888887776642
Q ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCccchHHH
Q 011444 217 QQQGRDITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTK 296 (485)
Q Consensus 217 ~~~g~~~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~~~L~~ 296 (485)
.. ++.+.+++.++.... .....+|++|+...-..+.|+--.+++-.+ |.. +. +.......
T Consensus 105 ----l~-----~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~--g~~--~~----~~~~~~A~ 164 (293)
T 3acx_A 105 ----IA-----FQSFYNLIDTVYKDQ---HFTMFETDAELFGYCYGVAGTVGEVLTPIL--SDH--ET----HQTYDVAR 164 (293)
T ss_dssp ----CC-----HHHHHHHHHHHHHHT---TCCCCSSHHHHHHHHHHHTHHHHHHHHHHH--CSS--CC----HHHHHHHH
T ss_pred ----CC-----HHHHHHHHHHHHHHc---CCCCCCCHHHHHHHHHHhhHHHHHHHHHHh--CCC--Cc----HHHHHHHH
Confidence 11 233455666665433 335678888887777666665433333222 321 10 11122333
Q ss_pred HHHHHHHHhcChhhHHHHHhcCCchhHHHHHhhCCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 011444 297 LLMLVPRLLNDIQSYQKEIADGKQNSVILYLRENPEADIEDS---------VAYVRELIATKEKELLEHALMDGFSDLPR 367 (485)
Q Consensus 297 ~~~~i~rL~NDI~S~~kE~~~G~~~n~V~ymke~~g~S~EeA---------i~~v~~~i~~~~k~ln~~~l~~~~~~vp~ 367 (485)
..+.-.-+.|=+........+|-+-==...|.++ |+|.++- .+-+..++..+...+.+..--. ..+|.
T Consensus 165 ~lG~AlQltNilRDv~eD~~~gR~YLP~d~l~~~-gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~--~~lp~ 241 (293)
T 3acx_A 165 RLGESLQLINILRDVGEDFENERIYFSKQRLKQY-EVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQI--KVFSI 241 (293)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTTCCCSCHHHHHHH-TCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTG--GGSCT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeCHHHHHHc-CCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhH--HhCCH
Confidence 3444444555444445555666531111256676 8887762 2344455555554444332211 24776
Q ss_pred hHHHHH
Q 011444 368 PCKQLH 373 (485)
Q Consensus 368 ~~~~~~ 373 (485)
...-.+
T Consensus 242 ~~r~~~ 247 (293)
T 3acx_A 242 EAQPII 247 (293)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 555443
No 18
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=70.35 E-value=81 Score=30.54 Aligned_cols=144 Identities=8% Similarity=0.096 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHH--HHHhcCCCCCccccccCccchHHHHHH
Q 011444 222 DITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLT--ASCFLNPSLPNYKFRPAQYDTVTKLLM 299 (485)
Q Consensus 222 ~~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~--~~~~~g~~Lp~ev~~~~~~~~L~~~~~ 299 (485)
.....+.+.....+.+...+..|... .||.++|+.+-..-+|..+...+ .....| .+++.. ....++-....
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag--~~~~~~--~~l~~~g~~lG 200 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGG--AEEELA--ERFSHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHHHH
Confidence 35566677777788888888877554 48999999876666665432221 112222 233322 23456667778
Q ss_pred HHHHHhcChhhHHHHHhcCCc----hhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH-hHHHHH
Q 011444 300 LVPRLLNDIQSYQKEIADGKQ----NSVIL-YLRENPEADIEDSVAYVRELIATKEKELLEHALMDGFSDLPR-PCKQLH 373 (485)
Q Consensus 300 ~i~rL~NDI~S~~kE~~~G~~----~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~~~l~~~~~~vp~-~~~~~~ 373 (485)
...-+.||+..+--..+..+. .++.. |..+ .+.+++++++.++.++..++-.+ .+. .+|. +.++..
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~---~~~~~~le~a~~~a~~~~~~A~~-~L~----~lp~~~~~~~L 272 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKS---TSKEEALKKSIDCVKLHVAAAKE-TLE----TFRECPARDKL 272 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CCHHHHHTTT---SCHHHHHHHHHHHHHHHHHHHHH-HHT----TSCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHh---cCchhHHHHHHHHHHHHHHHHHH-HHH----hCCCchHHHHH
Confidence 888899999988654431122 23343 4433 34455666655555544433222 222 2553 345555
Q ss_pred HhHhhh
Q 011444 374 LFCMKA 379 (485)
Q Consensus 374 ln~aR~ 379 (485)
.++++.
T Consensus 273 ~~l~~~ 278 (295)
T 3ipi_A 273 FQITDY 278 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 19
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=64.72 E-value=88 Score=30.10 Aligned_cols=123 Identities=7% Similarity=0.045 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHH--HHHHhcCCCCCccccccCccchHHHHHHH
Q 011444 223 ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVL--TASCFLNPSLPNYKFRPAQYDTVTKLLML 300 (485)
Q Consensus 223 ~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~--~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~ 300 (485)
....+.+.....+.+...+..|......+|.++|+.+-..-+|..+... +.....| .+++ ...++......
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~-----~l~~~g~~lG~ 207 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT-----XMXLLGEXFGV 207 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh-----HHHHHHHHHHH
Confidence 5566677778888888888888765447899999987766665543222 2222233 2232 56677788888
Q ss_pred HHHHhcChhhHHHHHh-cCC-chh-H-HH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 011444 301 VPRLLNDIQSYQKEIA-DGK-QNS-V-IL-YLRENPEADIEDSVAYVRELIATKEKELLE 355 (485)
Q Consensus 301 i~rL~NDI~S~~kE~~-~G~-~~n-~-V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~ 355 (485)
..-+.||+..+.-+.+ .|+ +.+ + .. +..=+ ..|.|.+.+.+.++++.+.+..
T Consensus 208 aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~---~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 208 AFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV---GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHCCCC-----------CHHHHH---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999875432 232 111 0 11 21111 3577888888888888876654
No 20
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=59.01 E-value=1.3e+02 Score=28.87 Aligned_cols=165 Identities=12% Similarity=0.096 Sum_probs=82.9
Q ss_pred cccCCCCchHHHHHHHHHHHHHHhhhhcccCC-C-HHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHhhc
Q 011444 142 GVSLPYDSHVRLILAKSAILITVADDFFDMEG-S-LNELKSLADAVKRWDGKGLSGHSKTIFGALDGLVSELAEKHLQQQ 219 (485)
Q Consensus 142 ~~~eP~~s~~RL~~ak~~~~~fi~DD~~D~~g-t-~eEl~~~~~ai~rwd~~~lpe~~k~~~~al~d~~~ei~~~~~~~~ 219 (485)
..+-|.--...+ .-+-.+.=.+||+-|+.. . ...++.+-+.+++.- .+-|. .|++.+|.+++.+..-
T Consensus 33 ~~~lp~~~R~~~--~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~-~g~~~--~pv~~al~~~~~~~~l------ 101 (294)
T 4hd1_A 33 SLFVPRHLRPHF--YSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAF-AGEAT--TPAFRALQFTIATCNL------ 101 (294)
T ss_dssp TTTCCTTTHHHH--HHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHH-HTCCC--SHHHHHHHHHHHHHTC------
T ss_pred HHHCCHHHHHHH--HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh-cCCCC--CHHHHHHHHHHHHcCC------
Confidence 456676544433 223345667899999753 2 233444444433221 12233 4788888888777531
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCccchHHHHHH
Q 011444 220 GRDITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLM 299 (485)
Q Consensus 220 g~~~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~~~L~~~~~ 299 (485)
+ ++.+.+++.++..... ....+|++|+...-..+.|+--.+.+- .+|.. +++. ...-...+
T Consensus 102 --~-----~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~--i~g~~-~~~~------~~~A~~lG 162 (294)
T 4hd1_A 102 --P-----MEPFLRLIEANRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLG--IFGCL-DDER------ARLSDATC 162 (294)
T ss_dssp --C-----SHHHHHHHHHHHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHH--HTTCC-SHHH------HHHHHHHH
T ss_pred --C-----HHHHHHHHHHHHhccc---cCCCCCHHHHHHHHHhccchHHHHHHH--HhCCC-CHHH------HHHHHHHH
Confidence 1 1234456666654433 345778887776666655543222222 23321 1111 12223333
Q ss_pred HHHHHhcChhhHHHHHhcCCchhHHHHHhhCCCCCHHH
Q 011444 300 LVPRLLNDIQSYQKEIADGKQNSVILYLRENPEADIED 337 (485)
Q Consensus 300 ~i~rL~NDI~S~~kE~~~G~~~n~V~ymke~~g~S~Ee 337 (485)
.-.-+.|=+........+|-+-==...|.++ |+|.++
T Consensus 163 ~AlQltNilRDv~eD~~~gR~YlP~~~l~~~-gv~~~d 199 (294)
T 4hd1_A 163 TALQVANHMQDIDRDLALGRIYVPRADLEQF-GATLDD 199 (294)
T ss_dssp HHHHHHHHHHTHHHHHHTTCBCSCHHHHHTT-TCCHHH
T ss_pred HHHHHHHHHHhchhhhccCceeCCHHHHHHc-CCCHHH
Confidence 4444555444455556667531111267777 888775
No 21
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=56.06 E-value=45 Score=32.46 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHH--HHHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChh
Q 011444 232 YETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLV--LTASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQ 309 (485)
Q Consensus 232 ~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~--~~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~ 309 (485)
...+.+...+..|...+..||.++|+.+-..-+|..+.. .+.....| .+++ ...++........-+.||+.
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~-----~l~~~g~~lG~aFQI~DDil 219 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG-----PLTAYATALGLAFQIADDIL 219 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH-----HHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 456777788888876567899999998765555544322 12222223 2222 45667778888888999999
Q ss_pred hHHHHHh-cC-----CchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 011444 310 SYQKEIA-DG-----KQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELL 354 (485)
Q Consensus 310 S~~kE~~-~G-----~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln 354 (485)
.+.-+.+ -| |..+-.. |..=+ ..|.|.+.+.+.++++...|.
T Consensus 220 D~~~~~~~~GK~~g~Dl~~gK~T~p~l~---~l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 220 DVEGNEEAAGKRLGKDAEAHKATFVSLL---GLAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp ---------------------CCHHHHH---CSSHHHHHHHHHHHHHHHHTG
T ss_pred hccCCHHHhCCCccchhhcCCccHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 8854321 12 2211111 11111 246777888888888776544
No 22
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=53.24 E-value=1.3e+02 Score=29.08 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHH--HhcCCCCCccccccCccchHHHHHH
Q 011444 222 DITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTAS--CFLNPSLPNYKFRPAQYDTVTKLLM 299 (485)
Q Consensus 222 ~~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~--~~~g~~Lp~ev~~~~~~~~L~~~~~ 299 (485)
.....+.+.+.+.+.+...+..|+.....||.++|+.+-..-+|..+...+.. ...|. + +...++.....
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~~--~------~~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDY--K------EDLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--C------SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCCC--h------HHHHHHHHHHH
Confidence 45666788888899999999999776668999999988776666543222211 11221 1 24677888889
Q ss_pred HHHHHhcChhhHH
Q 011444 300 LVPRLLNDIQSYQ 312 (485)
Q Consensus 300 ~i~rL~NDI~S~~ 312 (485)
...-+.||+..+-
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998874
No 23
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=49.76 E-value=1.4e+02 Score=29.74 Aligned_cols=85 Identities=8% Similarity=0.076 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHH--HHHhcCCCCCccccccCccchHHHHHH
Q 011444 222 DITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLT--ASCFLNPSLPNYKFRPAQYDTVTKLLM 299 (485)
Q Consensus 222 ~~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~--~~~~~g~~Lp~ev~~~~~~~~L~~~~~ 299 (485)
.....+.+.+...+.+...+..|.... ||.++|+++-..-+|..+...+ .....| .+++.. .....+.....
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~lag--a~~~~~--~~l~~~g~~lG 233 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAG--AAPEHI--DALKNFGAAVG 233 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHHHH
Confidence 456778888899999999999887655 9999999877666665543221 112222 233322 23456667778
Q ss_pred HHHHHhcChhhHH
Q 011444 300 LVPRLLNDIQSYQ 312 (485)
Q Consensus 300 ~i~rL~NDI~S~~ 312 (485)
...-+.||+..+-
T Consensus 234 ~aFQI~DDilD~~ 246 (360)
T 3lmd_A 234 MIFQIVDDIIDIF 246 (360)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 8888889998875
No 24
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=44.73 E-value=1.7e+02 Score=29.07 Aligned_cols=87 Identities=9% Similarity=0.077 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhcCCCC-CCHHHHHHhchhhhHHH---HHHHHHHHhcCCCCCccccccCccchHHHHHH
Q 011444 224 TNDLKDIWYETFASWLTEATWSKSGRT-PSMEEYLETGMISIAAH---TLVLTASCFLNPSLPNYKFRPAQYDTVTKLLM 299 (485)
Q Consensus 224 ~~~l~~~w~~~l~a~l~EA~w~~~g~v-PsleEYl~~r~~S~g~~---~~~~~~~~~~g~~Lp~ev~~~~~~~~L~~~~~ 299 (485)
...+.+.....+.+...+-.|...+.. ++.++|+++-..=+|.. .++.++....|...+++... ...++.....
T Consensus 170 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~--~l~~~g~~lG 247 (368)
T 2q58_A 170 QKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLN--LIEAILYKLG 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTT--THHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHH--HHHHHHHHHH
Confidence 445555566667777777777765554 46788997654433332 22333444455445544433 3566777888
Q ss_pred HHHHHhcChhhHH
Q 011444 300 LVPRLLNDIQSYQ 312 (485)
Q Consensus 300 ~i~rL~NDI~S~~ 312 (485)
...-+.||+..+-
T Consensus 248 ~aFQI~DDiLD~~ 260 (368)
T 2q58_A 248 EFYQVHNDVSDYL 260 (368)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 8899999998874
No 25
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=42.42 E-value=1.2e+02 Score=29.30 Aligned_cols=111 Identities=11% Similarity=0.032 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHH--HHHhcCCCCCccccccCccchHHHHHHHHHHHhcChh
Q 011444 232 YETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLT--ASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQ 309 (485)
Q Consensus 232 ~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~--~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~ 309 (485)
...+.+...+..|... .+|.++|+.+-..-+|..+...+ .....| .+++.. ....++-.......-+.||+.
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~--~~l~~~g~~lG~aFQI~DDil 221 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTK--EHLESYSYHLGMMFQIKDDLL 221 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776543 78999999887666665432221 112223 333322 234666778888888999999
Q ss_pred hHHHHHh-cCC-----c----hhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 011444 310 SYQKEIA-DGK-----Q----NSVILYLRENPEADIEDSVAYVRELIATKEKELL 354 (485)
Q Consensus 310 S~~kE~~-~G~-----~----~n~V~ymke~~g~S~EeAi~~v~~~i~~~~k~ln 354 (485)
.+.-+.+ -|+ . .+++.+. ..+.|.+.+.+.++++.+.+.
T Consensus 222 D~~~d~~~~GK~~g~Dl~~gK~T~p~l~------al~~a~~~a~~~~~~A~~~L~ 270 (301)
T 1rtr_A 222 DCYGDEAKLGKKVGSDLENNKSTYVSLL------GKDGAEDKLTYHRDAAVDELT 270 (301)
T ss_dssp HHHHHHCC-------------CCHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHhCCCcchHHHcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8865432 122 1 1222210 146677777777777776654
No 26
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=38.34 E-value=1.9e+02 Score=27.96 Aligned_cols=114 Identities=11% Similarity=0.014 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHH--HHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChhh
Q 011444 233 ETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVL--TASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQS 310 (485)
Q Consensus 233 ~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~--~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S 310 (485)
..+.+...+-.|.. ..+|.++|..+-..-+|..+... +.....| .+++.. ....++........-+.||+..
T Consensus 157 ~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~~~~ga~lag--a~~~~~--~~l~~~g~~lGlaFQI~DDilD 230 (302)
T 3p8l_A 157 GMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFALIAGGVLAN--QTEEVI--GLLTQFAHHYGLAFQIRDDLLD 230 (302)
T ss_dssp THHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666643 37899999987544444333221 1112222 233322 2345666777788888999988
Q ss_pred HHHHH-hcC-----CchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 011444 311 YQKEI-ADG-----KQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELLE 355 (485)
Q Consensus 311 ~~kE~-~~G-----~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln~ 355 (485)
+--+. .-| |..+-.. |..= ...+.|.+.+.+.++++.+.+..
T Consensus 231 ~~~d~~~~GK~~g~Dl~egK~T~p~l---~~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 231 ATSTEADLGKKVGRDEALNKSTYPAL---LGIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp TTC-----------------CCHHHH---HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHhCCChhhHHhcCCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 74221 112 2111111 1111 14688888999999988877764
No 27
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=38.18 E-value=1.6e+02 Score=28.89 Aligned_cols=86 Identities=10% Similarity=0.090 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCC--CCCCHHHHHHhchhhhHHHHHHHH--HHHhcCCCCCccccccCccchHHHHH
Q 011444 223 ITNDLKDIWYETFASWLTEATWSKSG--RTPSMEEYLETGMISIAAHTLVLT--ASCFLNPSLPNYKFRPAQYDTVTKLL 298 (485)
Q Consensus 223 ~~~~l~~~w~~~l~a~l~EA~w~~~g--~vPsleEYl~~r~~S~g~~~~~~~--~~~~~g~~Lp~ev~~~~~~~~L~~~~ 298 (485)
....+.+.....+.+...+..|+... ..||.++|+.+-..-+|..+...+ .....|. ++ ......++....
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~---~~~~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPS--SH---HGHSLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC--cH---HHHHHHHHHHHH
Confidence 45566677788888888888887755 578999999877666665432222 2222232 22 133567788889
Q ss_pred HHHHHHhcChhhHHH
Q 011444 299 MLVPRLLNDIQSYQK 313 (485)
Q Consensus 299 ~~i~rL~NDI~S~~k 313 (485)
....-+.||+..+--
T Consensus 207 G~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 207 GIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999998853
No 28
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=34.37 E-value=2.8e+02 Score=27.45 Aligned_cols=86 Identities=3% Similarity=-0.016 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhc----------CCC-CCCHHHHHHhchhhhHHHHHHHH--HHHhcCCCCCccccccC
Q 011444 223 ITNDLKDIWYETFASWLTEATWSK----------SGR-TPSMEEYLETGMISIAAHTLVLT--ASCFLNPSLPNYKFRPA 289 (485)
Q Consensus 223 ~~~~l~~~w~~~l~a~l~EA~w~~----------~g~-vPsleEYl~~r~~S~g~~~~~~~--~~~~~g~~Lp~ev~~~~ 289 (485)
+...+.+.....+.+...+..|.. .+. .+|.++|+.+-..-+|..+...+ .....| .+++.. .
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~--~ 208 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVS--DDRGLA--E 208 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHH--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHH--H
Confidence 467778888889999999888863 223 67999999876666665543221 112222 222222 2
Q ss_pred ccchHHHHHHHHHHHhcChhhHH
Q 011444 290 QYDTVTKLLMLVPRLLNDIQSYQ 312 (485)
Q Consensus 290 ~~~~L~~~~~~i~rL~NDI~S~~ 312 (485)
...++........-+.||+..+-
T Consensus 209 ~l~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 209 AAWNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677788888889998874
No 29
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=33.87 E-value=1.2e+02 Score=29.54 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhH-hcCCCCCCHHHHHHhchhhhHHH-HH--HHHHHHhcCCCCCccccccCccchHHHHH
Q 011444 223 ITNDLKDIWYETFASWLTEATW-SKSGRTPSMEEYLETGMISIAAH-TL--VLTASCFLNPSLPNYKFRPAQYDTVTKLL 298 (485)
Q Consensus 223 ~~~~l~~~w~~~l~a~l~EA~w-~~~g~vPsleEYl~~r~~S~g~~-~~--~~~~~~~~g~~Lp~ev~~~~~~~~L~~~~ 298 (485)
....+.+.....+.+...+..| ......+|.++|+++-..-+|.. +. +.+.....| .+++.. ..++....
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag--~~~~~~----l~~~g~~l 204 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAG--KTPPAA----YEEGGLRL 204 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCCCHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcC--CCHHHH----HHHHHHHH
Confidence 5667777888899999999888 65535689999998776655555 32 222222333 222222 66777888
Q ss_pred HHHHHHhcChhhHH
Q 011444 299 MLVPRLLNDIQSYQ 312 (485)
Q Consensus 299 ~~i~rL~NDI~S~~ 312 (485)
....-+.||+..+-
T Consensus 205 G~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 205 GTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCccc
Confidence 88888999998874
No 30
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=33.82 E-value=2.6e+02 Score=27.00 Aligned_cols=113 Identities=11% Similarity=0.004 Sum_probs=60.6
Q ss_pred HHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHH-HHHhcCCCCCccccccCccchHHHHHHHHHHHhcChhhHH
Q 011444 234 TFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLT-ASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSYQ 312 (485)
Q Consensus 234 ~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~-~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S~~ 312 (485)
.+.+...+..|... .+|.++|..+-..-+|..+...+ +...++..-+++... ...++-.......-+.||+..+.
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~--~l~~~g~~lGlaFQI~DDilD~~ 229 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELK--ALQTYAQAIGLAFQVQDDILDVE 229 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcc
Confidence 56677777676543 48999999885444444332211 111122211333222 24566677888888999999886
Q ss_pred HHH-hcCC-----chhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 011444 313 KEI-ADGK-----QNSVIL-YLRENPEADIEDSVAYVRELIATKEKEL 353 (485)
Q Consensus 313 kE~-~~G~-----~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~l 353 (485)
-+. .-|+ ..+-.. |..= ...|.|.+.+.+.++++.+.|
T Consensus 230 ~~~~~~GK~~g~Dl~egK~T~p~l---~~l~~a~~~a~~~~~~A~~~L 274 (304)
T 3lsn_A 230 SDTATLGKRQGADIARDKPTYPAL---LGLAAAKEYALELRDQALHAL 274 (304)
T ss_dssp HHHHHC------------CCHHHH---HCHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHhCCCcccHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 542 2222 211111 1111 135778888888887777554
No 31
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=32.45 E-value=3.6e+02 Score=26.27 Aligned_cols=86 Identities=13% Similarity=0.044 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHH--HHhcCCCCCccccccCccchHHHHHH
Q 011444 222 DITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTA--SCFLNPSLPNYKFRPAQYDTVTKLLM 299 (485)
Q Consensus 222 ~~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~--~~~~g~~Lp~ev~~~~~~~~L~~~~~ 299 (485)
.....+.+.....+.+...+..|... ..+|.++|+.+-..-+|..+...+. ....| .+++.. .....+.....
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~--~~l~~~g~~lG 207 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVSN-HSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEV--AFARLLGEYIG 207 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHHHH
Confidence 45677888888899999988888653 3589999998777666665432221 12222 233322 23466677788
Q ss_pred HHHHHhcChhhHH
Q 011444 300 LVPRLLNDIQSYQ 312 (485)
Q Consensus 300 ~i~rL~NDI~S~~ 312 (485)
...-+.||+..+-
T Consensus 208 ~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 208 ICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHhccCC
Confidence 8888889998874
No 32
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=31.74 E-value=2.8e+02 Score=26.85 Aligned_cols=110 Identities=9% Similarity=0.010 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHH--HHHhcCCCCCccccccCccchHHHHHHHHHHHhcChhh
Q 011444 233 ETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLT--ASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQS 310 (485)
Q Consensus 233 ~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~--~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S 310 (485)
..+.+...+-.|. +..+|.++|..+-..-+|..+...+ .....| .+++.. ....++........-+.||+..
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag--a~~~~~--~~l~~~g~~lGlaFQI~DDiLD 229 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ--APEAQW--PAYLQFADAFGLAFQIYDDILD 229 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCGGGH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666664 3468999999875444444332221 112222 233322 2345666777888888899988
Q ss_pred HHHHH-hcC-----Cch----hHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 011444 311 YQKEI-ADG-----KQN----SVILYLRENPEADIEDSVAYVRELIATKEKELL 354 (485)
Q Consensus 311 ~~kE~-~~G-----~~~----n~V~ymke~~g~S~EeAi~~v~~~i~~~~k~ln 354 (485)
+--+. .-| |.. +++. = ...+.|.+.+.++++++.+.+.
T Consensus 230 ~~gd~~~~GK~~g~Dl~egK~T~p~---l---~al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 230 VVSSPAEMGKATQKDADEAKNTYPG---K---LGLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHCC-----------CTTTSSSHHH---H---HCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHhCCCccchhhcCCccHHH---H---HHHHHhHHHHHHHHHHHHHHHH
Confidence 74221 111 221 2222 1 1346777778888887776654
No 33
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=31.37 E-value=2.7e+02 Score=27.23 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHH-HHhcCCCCCccccccCccchHHHHHHHHHHHhcChhh
Q 011444 232 YETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTA-SCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQS 310 (485)
Q Consensus 232 ~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~-~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S 310 (485)
...+.+...+..|... .+|.++|+.+-..-+|..+...+. ...++...+++.. ....++-.......-+.||+..
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~--~~l~~~g~~lGlAFQI~DDiLD 233 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQF--DRLDHYAKCIGLAFQIQDDILD 233 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777777776543 789999998855555544322211 1112211233322 2345666777888888999988
Q ss_pred HHHHH-hcC-----Cc----hhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Q 011444 311 YQKEI-ADG-----KQ----NSVILYLRENPEADIEDSVAYVRELIATKEKE 352 (485)
Q Consensus 311 ~~kE~-~~G-----~~----~n~V~ymke~~g~S~EeAi~~v~~~i~~~~k~ 352 (485)
+.-+. .-| |. .+++.+. ..|.|.+.+.+.++++...
T Consensus 234 ~~~d~~~~GK~~g~Dl~egK~T~p~l~------gle~a~~~a~~~~~~A~~~ 279 (324)
T 3ts7_A 234 EESDTQTLGKTRGKDRDHNKPNYPALL------GLSGAKEKAEEMHEAALES 279 (324)
T ss_dssp HTCC---------------CCCHHHHH------CHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 74221 112 11 1222211 3577777777777777654
No 34
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=30.26 E-value=2.2e+02 Score=27.41 Aligned_cols=113 Identities=14% Similarity=0.049 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHH-HHhcCCCCCccccccCccchHHHHHHHHHHHhcChhh
Q 011444 232 YETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTA-SCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQS 310 (485)
Q Consensus 232 ~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~-~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S 310 (485)
...+.+...+..|. +..+|.++|+.+-..-+|..+...+. ...++...+++.. ....++........-+.||+..
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~--~~l~~~g~~lG~aFQI~DDilD 233 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAML--PHLDRYAEAVGLAFQVQDDILD 233 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777775 35789999998865444443322211 1111110112211 2345666777888888999988
Q ss_pred HHHHH-hcCC-----c----hhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 011444 311 YQKEI-ADGK-----Q----NSVILYLRENPEADIEDSVAYVRELIATKEKELL 354 (485)
Q Consensus 311 ~~kE~-~~G~-----~----~n~V~ymke~~g~S~EeAi~~v~~~i~~~~k~ln 354 (485)
+.-+. ..|+ . .+++... ..+.|.+.+.+.++++.+.+.
T Consensus 234 ~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 281 (302)
T 3p8r_A 234 IISDTETLGKPQGSDQELNKSTYPALL------GLEGAQQKAHTLLQEALLALE 281 (302)
T ss_dssp HTTC---------------CCCHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHhCCCcchHHhcCCchHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 74321 1121 1 1222210 256777777777777775543
No 35
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=29.68 E-value=2.3e+02 Score=27.57 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHH-HHHhcCCCCCccccccCccchHHHHHHHHHHHhcChhhH
Q 011444 233 ETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLT-ASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSY 311 (485)
Q Consensus 233 ~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~-~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S~ 311 (485)
..+.+...+..|. +..+|.++|..+-..-+|..+...+ +...++...+++.. ....++-.......-+.||+..+
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~--~~l~~~g~~lGlAFQI~DDiLD~ 227 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQL--AKLDAYAHAIGLAFQVQDDIIDL 227 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777776765 3458999999886544444332221 11112221333322 23456667778888889999887
Q ss_pred HHHH-hcCC-----c----hhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 011444 312 QKEI-ADGK-----Q----NSVILYLRENPEADIEDSVAYVRELIATKEKELL 354 (485)
Q Consensus 312 ~kE~-~~G~-----~----~n~V~ymke~~g~S~EeAi~~v~~~i~~~~k~ln 354 (485)
.-+. .-|+ . .+++.+. ..|.|.+.+.+.++++.+.|.
T Consensus 228 ~gd~~~~GK~~g~Dl~egK~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 274 (317)
T 4f62_A 228 TSDTETLGKTQFSDAEANKATYPKLL------GLDGAKALVVRLHEQAIAQIS 274 (317)
T ss_dssp C----------------CCCCHHHHH------HHHHHHHHHHHHHHHHHHHHG
T ss_pred cCChHhhCCCcchHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4322 1122 1 1222211 357777777777777776544
No 36
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=28.34 E-value=4.3e+02 Score=25.80 Aligned_cols=87 Identities=15% Similarity=0.049 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHH--HHHhcCCCCCccccccCccchHHHHHH
Q 011444 222 DITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLT--ASCFLNPSLPNYKFRPAQYDTVTKLLM 299 (485)
Q Consensus 222 ~~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~--~~~~~g~~Lp~ev~~~~~~~~L~~~~~ 299 (485)
.+...+.+.....+.+...+..|... ..+|.++|+.+-..-+|..+...+ .....| .+++.. ....++-....
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~--~~l~~~g~~lG 227 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTG--QTAEVA--VLAFEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT--CCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--cCHHHH--HHHHHHHHHHH
Confidence 35667777788888888877766432 357999999876655554432221 112222 233222 12355667778
Q ss_pred HHHHHhcChhhHHH
Q 011444 300 LVPRLLNDIQSYQK 313 (485)
Q Consensus 300 ~i~rL~NDI~S~~k 313 (485)
...-+.||+..+--
T Consensus 228 ~aFQi~DD~lD~~g 241 (348)
T 3apz_A 228 LAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccC
Confidence 88888999998854
No 37
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=27.63 E-value=2e+02 Score=27.68 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHH--HHHHhcCCCCCccccccCccchHHHHHH
Q 011444 222 DITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVL--TASCFLNPSLPNYKFRPAQYDTVTKLLM 299 (485)
Q Consensus 222 ~~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~--~~~~~~g~~Lp~ev~~~~~~~~L~~~~~ 299 (485)
.....+.+.....+.+...+..|.... +|.++|+.+-..-+|..+... +.....|. ++ ....++.....
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~--~~-----~~l~~~g~~lG 197 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE--LG-----EDLYNLGVTIG 197 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC--CC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC--CH-----HHHHHHHHHHH
Confidence 356777888889999999999887654 999999987766666543222 22222332 11 34566677778
Q ss_pred HHHHHhcChhhHHHH
Q 011444 300 LVPRLLNDIQSYQKE 314 (485)
Q Consensus 300 ~i~rL~NDI~S~~kE 314 (485)
...-+.||+..+.-+
T Consensus 198 ~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 198 TIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccCc
Confidence 888889999887544
No 38
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=27.38 E-value=2.4e+02 Score=27.69 Aligned_cols=111 Identities=11% Similarity=0.054 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHH--HHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChh
Q 011444 232 YETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVL--TASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQ 309 (485)
Q Consensus 232 ~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~--~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~ 309 (485)
...+.+...+..|... .+|.++|+.+-..-+|..+... +.....| .+++.. ....++-.......-+.||+.
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~--~~l~~~g~~lGlAFQI~DDiL 265 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAER--QRLRLFGEKIGLSFQLADDLL 265 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777654 7899999987776666543222 1222223 233322 234566777888888999998
Q ss_pred hHHHHHh-cCC-----c----hhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 011444 310 SYQKEIA-DGK-----Q----NSVILYLRENPEADIEDSVAYVRELIATKEKELL 354 (485)
Q Consensus 310 S~~kE~~-~G~-----~----~n~V~ymke~~g~S~EeAi~~v~~~i~~~~k~ln 354 (485)
.+.-+.+ -|+ . .+++.. + ..|.|.+.+.+.++++.+.|.
T Consensus 266 D~~gd~~~~GK~~g~Dl~egK~T~p~l---~---~le~a~~~a~~~~~~A~~~L~ 314 (335)
T 2h8o_A 266 DLTADAATMGKATGKDAARGKGTLVAL---R---GEAWAREKLQEQVAEASELLA 314 (335)
T ss_dssp HHC-----------------CCCHHHH---H---CHHHHHHHHHHHHHHHHHHTG
T ss_pred HhcCCHHHhCCCcchHHhcCCccHHHH---H---HHHHHHHHHHHHHHHHHHHHH
Confidence 8743221 121 1 122221 1 256777777777777776543
No 39
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=26.60 E-value=4.6e+02 Score=25.66 Aligned_cols=87 Identities=15% Similarity=-0.036 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHH--HHHhcCCCCCccccccCccchHHHHHH
Q 011444 222 DITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLT--ASCFLNPSLPNYKFRPAQYDTVTKLLM 299 (485)
Q Consensus 222 ~~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~--~~~~~g~~Lp~ev~~~~~~~~L~~~~~ 299 (485)
.....+.+.....+.+...+..|.. +..+|.++|+.+-..-+|..+...+ .....| .+++.. .....+-....
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~--~~l~~~g~~lG 225 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSAG--VDVAKS--EALRDYGLNLG 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHHHH
Confidence 4567778888888899888888754 3458999999877666665532221 112222 233322 23456667788
Q ss_pred HHHHHhcChhhHHH
Q 011444 300 LVPRLLNDIQSYQK 313 (485)
Q Consensus 300 ~i~rL~NDI~S~~k 313 (485)
...-+.||+..+--
T Consensus 226 ~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 226 LAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhccC
Confidence 88888999988753
No 40
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=26.34 E-value=3.4e+02 Score=26.26 Aligned_cols=116 Identities=10% Similarity=-0.009 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCC-CCccccccCccchHHHHHHHHHHHhcChhh
Q 011444 232 YETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPS-LPNYKFRPAQYDTVTKLLMLVPRLLNDIQS 310 (485)
Q Consensus 232 ~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~-Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S 310 (485)
...+.+...+..|... ..+|.++|..+-..-+|..+...+....++.. .+++... ...++-.......-+.||+..
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~--~l~~~g~~lGlaFQI~DDilD 234 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKS--ALRTYGKHIGLVFQMQDDYLD 234 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 3566777777777543 37899999987654444433222222222221 3333322 245666778888888999988
Q ss_pred HHHHH-hcCC-----chhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 011444 311 YQKEI-ADGK-----QNSVIL-YLRENPEADIEDSVAYVRELIATKEKEL 353 (485)
Q Consensus 311 ~~kE~-~~G~-----~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~l 353 (485)
+.-+. .-|+ ..+-.. |..= ...+.|.+.+.+.++++.+.+
T Consensus 235 ~~gd~~~~GK~~g~Dl~~gK~T~p~l---~~l~~a~~~a~~~~~~A~~~L 281 (313)
T 3lom_A 235 LYAPTQILGKGRSSDQANQKTTFATL---FNKQQLEEEIAVHYQIAMDSL 281 (313)
T ss_dssp HHCC---------------CCCHHHH---SCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHhhCCCCcchhhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 75321 1121 111111 1111 146788888888888777554
No 41
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=25.01 E-value=2.8e+02 Score=26.89 Aligned_cols=112 Identities=11% Similarity=0.053 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHH--HHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChh
Q 011444 232 YETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVL--TASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQ 309 (485)
Q Consensus 232 ~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~--~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~ 309 (485)
...+.+...+..|. +..+|+++|..+-..-+|..+... +.....| .+++.. .....++........-+.||+.
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~-~~~l~~~g~~lGlaFQI~DDiL 233 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEEL-FKWLQAFGLKMGLCFQVLDDII 233 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777776665 467899999987555545433221 1212223 223222 0224566677778888899999
Q ss_pred hHHHHH-hcCCc-hhHHHHHhhCCCCC------HHHHHHHHHHHHHHHHHHHH
Q 011444 310 SYQKEI-ADGKQ-NSVILYLRENPEAD------IEDSVAYVRELIATKEKELL 354 (485)
Q Consensus 310 S~~kE~-~~G~~-~n~V~ymke~~g~S------~EeAi~~v~~~i~~~~k~ln 354 (485)
.+--+. .-|+. .+ ++. .+| .|.|.+...++++++.+.+.
T Consensus 234 D~~gd~~~~GK~~g~-----~~g-K~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 234 DVTQDEEESGKTTHL-----DSA-KNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHC------------------C-CSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCChHHHCccccc-----ccC-cchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 886432 23432 22 222 233 46777777777777775543
No 42
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=24.71 E-value=4.2e+02 Score=25.82 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHH--HHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChh
Q 011444 232 YETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVL--TASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQ 309 (485)
Q Consensus 232 ~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~--~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~ 309 (485)
...+.+...+..|... ..+|.++|..+-..-+|..+... +.....| .+++.. ....++-.......-+.||+.
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~--~~l~~~g~~lGlAFQI~DDiL 254 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASIMSGAVLAE--ASEGDI--KKLEGFGYKLGLAFQIKDDIL 254 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777543 36899999988544444333221 1112222 233322 234566677788888889998
Q ss_pred hHHHH---Hhc--C-CchhHHH-HHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 011444 310 SYQKE---IAD--G-KQNSVIL-YLRENPEADIEDSVAYVRELIATKEKELL 354 (485)
Q Consensus 310 S~~kE---~~~--G-~~~n~V~-ymke~~g~S~EeAi~~v~~~i~~~~k~ln 354 (485)
.+--+ ..+ | |..+-.. |..=+ ..+.|.+.+.+.++++.+.+.
T Consensus 255 D~~gd~~~~GK~~g~Dl~egK~T~p~l~---al~~a~~~a~~~~~~A~~~L~ 303 (324)
T 3uca_A 255 DVVGNAKDLGKNVHKDQESNKNNYITIF---GLEECKKKCVNITEECIEILS 303 (324)
T ss_dssp HHCCC-----------------CHHHHH---CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCcchHhhcCCccHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 87321 111 1 2211111 11111 367888888888888887664
No 43
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=23.33 E-value=1.8e+02 Score=28.82 Aligned_cols=85 Identities=13% Similarity=0.041 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHH--HHHhcCCCCCccccccCccchHHHHHHH
Q 011444 223 ITNDLKDIWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLT--ASCFLNPSLPNYKFRPAQYDTVTKLLML 300 (485)
Q Consensus 223 ~~~~l~~~w~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~--~~~~~g~~Lp~ev~~~~~~~~L~~~~~~ 300 (485)
....+.+.....+.+...+..|... ..||.++|+.+-..-+|..+...+ .....| .+++.. .....+-.....
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~--~~l~~~g~~lG~ 218 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACASSIGAVLGG--ADERTA--DTLEKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHHHHH
Confidence 4566777788888898888888654 378999999877666665543221 112222 233322 234566777888
Q ss_pred HHHHhcChhhHH
Q 011444 301 VPRLLNDIQSYQ 312 (485)
Q Consensus 301 i~rL~NDI~S~~ 312 (485)
..-+.||+..+-
T Consensus 219 aFQi~DD~ld~~ 230 (352)
T 3nf2_A 219 AFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 888899998874
No 44
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=22.94 E-value=36 Score=20.00 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=9.8
Q ss_pred hHHHHhHHHhcc
Q 011444 57 LEYRMWIEEKDM 68 (485)
Q Consensus 57 le~r~yI~~Y~~ 68 (485)
+|||.|+++...
T Consensus 7 iearkyleqlhr 18 (26)
T 1xkm_B 7 IEARKYLEQLHR 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999998653
No 45
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=21.48 E-value=4.1e+02 Score=25.36 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHH-Hhc-CCCCCccccccCccchHHHHHHHHHHHhcChh
Q 011444 232 YETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTAS-CFL-NPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQ 309 (485)
Q Consensus 232 ~~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~-~~~-g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~ 309 (485)
...+.+...+..|... .+|.++|+.+-..-+|..+...+.. ..+ +. .+++.. ....++-.......-+.||+.
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag-~~~~~~--~~l~~~g~~lG~aFQi~DD~l 226 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAVRLGALSAGD-KGRRAL--PVLDKYAESIGLAFQVQDDIL 226 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTH-HHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCC-CCHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777543 7899999988765555543222111 111 11 122221 234566777888888999998
Q ss_pred hHHHHH-hcCC-c--------hhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 011444 310 SYQKEI-ADGK-Q--------NSVILYLRENPEADIEDSVAYVRELIATKEKELLE 355 (485)
Q Consensus 310 S~~kE~-~~G~-~--------~n~V~ymke~~g~S~EeAi~~v~~~i~~~~k~ln~ 355 (485)
.+.-+. ..|+ + .++... ...+.|.+.+.+.++++.+.+..
T Consensus 227 D~~~~~~~~GK~~g~Dl~~gK~T~p~l------~~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 227 DVVGDTATLGKRQGADQQLGKSTYPAL------LGLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHSCHHHHSSCTTHHHHHTCCCHHHH------HCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCChhhHHHcCCCcHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 885322 1232 1 112210 12467888888888888877665
No 46
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=20.82 E-value=78 Score=24.16 Aligned_cols=21 Identities=10% Similarity=0.330 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 011444 332 EADIEDSVAYVRELIATKEKE 352 (485)
Q Consensus 332 g~S~EeAi~~v~~~i~~~~k~ 352 (485)
|++.+||+..+.+.+++++..
T Consensus 7 Gl~v~eA~~~l~~~l~~~~~~ 27 (82)
T 3fau_A 7 GLHVDEALEHLMRVLEKKTEE 27 (82)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888754
No 47
>2x3m_A Hypothetical protein ORF239; unknown function; 1.45A {Pyrobaculum spherical virus}
Probab=20.45 E-value=88 Score=27.62 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhHhcCCCCCCHHHHHHhchhhhHHHHHHHHHHHhcCCCCCccccccCccchHHHHHHHHHHHhcChhhHH
Q 011444 233 ETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSYQ 312 (485)
Q Consensus 233 ~~l~a~l~EA~w~~~g~vPsleEYl~~r~~S~g~~~~~~~~~~~~g~~Lp~ev~~~~~~~~L~~~~~~i~rL~NDI~S~~ 312 (485)
=|.+.|+.||+ ..-|++.+-+..+..-.+..- .......+|..+..+++..+.+.++...+-++.|=..|.+-.-
T Consensus 95 wytrtyleeak----dirpdiadalargmaglafgr-tdwvasml~P~I~R~iY~~~~V~~~~~EtRD~LRR~S~YYiSl 169 (239)
T 2x3m_A 95 WYTRTYLEEAK----DIRPDIADALARGMAGLAFGR-TDWVASMLDPQIMRHIYTDPEVARIYSETRDMLRRVSDYYISL 169 (239)
T ss_dssp HHHHHHHHHTT----CCCHHHHHHHHHHHHHHHHTC-HHHHGGGGCHHHHGGGTTCHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred hhHHHHHHHhh----ccCccHHHHHHhhhhcccccc-hHHHHHhhChHHHHHHHhcccHHHHHHHHHHHHHHHhhheEec
Confidence 34566777776 456777777664443322211 1122233566777778888888888888888888777754221
Q ss_pred HHHhcCCchhHHHHHhhCCCCCHHHHHHHH
Q 011444 313 KEIADGKQNSVILYLRENPEADIEDSVAYV 342 (485)
Q Consensus 313 kE~~~G~~~n~V~ymke~~g~S~EeAi~~v 342 (485)
--.+-|.+..+|.+.+.. |-.-+..+.++
T Consensus 170 ~t~elg~~~DIia~AkAk-G~~~evv~R~~ 198 (239)
T 2x3m_A 170 TTMELGKVADIIAEAKAK-GENPEVVAREI 198 (239)
T ss_dssp CHHHHHHHHHHHHHHHHH-TCCHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhc-CCCchHHHHHH
Confidence 122335566677666554 44444433333
Done!