Query 011445
Match_columns 485
No_of_seqs 265 out of 3038
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 01:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1.3E-30 2.9E-35 233.0 8.2 364 52-443 74-463 (483)
2 KOG4341 F-box protein containi 99.9 4.1E-27 8.8E-32 210.8 9.2 341 97-464 109-456 (483)
3 PLN00113 leucine-rich repeat r 99.9 2.8E-21 6E-26 209.0 14.6 278 18-327 86-366 (968)
4 PLN00113 leucine-rich repeat r 99.9 9.1E-21 2E-25 205.0 16.6 395 19-472 112-536 (968)
5 KOG4194 Membrane glycoprotein 99.8 3.5E-21 7.5E-26 179.7 1.6 381 17-447 43-431 (873)
6 KOG4194 Membrane glycoprotein 99.8 2.7E-21 5.9E-26 180.4 -5.4 304 87-439 138-446 (873)
7 cd00116 LRR_RI Leucine-rich re 99.8 1.4E-16 3E-21 150.5 21.4 192 242-443 108-318 (319)
8 cd00116 LRR_RI Leucine-rich re 99.7 4.9E-16 1.1E-20 146.8 21.6 282 177-469 10-317 (319)
9 KOG2120 SCF ubiquitin ligase, 99.7 1.6E-17 3.6E-22 143.0 9.3 283 50-396 98-384 (419)
10 KOG2120 SCF ubiquitin ligase, 99.6 8.8E-16 1.9E-20 132.5 10.0 208 242-468 185-395 (419)
11 PLN03210 Resistant to P. syrin 99.6 2.6E-15 5.7E-20 163.2 14.4 130 267-420 778-908 (1153)
12 KOG1947 Leucine rich repeat pr 99.5 7.9E-14 1.7E-18 139.7 13.1 242 155-427 187-449 (482)
13 KOG1947 Leucine rich repeat pr 99.5 2.4E-13 5.3E-18 136.2 10.7 256 177-445 175-440 (482)
14 KOG1909 Ran GTPase-activating 99.4 1.8E-12 3.8E-17 114.9 13.2 267 186-463 26-328 (382)
15 KOG1909 Ran GTPase-activating 99.4 2.7E-12 5.8E-17 113.8 14.1 203 188-396 90-322 (382)
16 PLN03210 Resistant to P. syrin 99.4 1.1E-12 2.4E-17 142.8 12.8 346 19-443 552-904 (1153)
17 KOG0444 Cytoskeletal regulator 99.4 6.7E-15 1.4E-19 139.4 -6.7 297 95-443 75-373 (1255)
18 KOG0444 Cytoskeletal regulator 99.3 1.6E-13 3.4E-18 130.2 -4.7 268 55-360 103-375 (1255)
19 KOG3207 Beta-tubulin folding c 99.2 9.7E-12 2.1E-16 113.4 2.1 211 95-327 118-336 (505)
20 KOG0618 Serine/threonine phosp 99.1 6.9E-12 1.5E-16 124.4 0.6 126 294-444 361-488 (1081)
21 KOG0618 Serine/threonine phosp 99.1 3.1E-11 6.7E-16 119.9 3.6 203 190-416 241-487 (1081)
22 KOG3207 Beta-tubulin folding c 99.0 1E-10 2.2E-15 106.9 2.7 247 178-442 106-364 (505)
23 PRK15387 E3 ubiquitin-protein 98.9 1.7E-09 3.7E-14 110.2 7.3 257 99-445 202-458 (788)
24 PRK15387 E3 ubiquitin-protein 98.9 3.6E-09 7.8E-14 107.9 7.0 243 98-426 222-465 (788)
25 KOG4237 Extracellular matrix p 98.8 3.1E-10 6.8E-15 102.4 -1.6 96 43-166 55-150 (498)
26 KOG3665 ZYG-1-like serine/thre 98.7 3.5E-08 7.6E-13 100.3 8.5 215 97-326 59-284 (699)
27 KOG3665 ZYG-1-like serine/thre 98.7 1.3E-07 2.9E-12 96.1 11.2 167 122-302 59-230 (699)
28 COG5238 RNA1 Ran GTPase-activa 98.7 5.8E-07 1.2E-11 77.7 13.2 35 189-224 29-66 (388)
29 KOG0472 Leucine-rich repeat pr 98.6 3.9E-09 8.5E-14 95.7 -2.0 106 95-227 203-308 (565)
30 KOG2982 Uncharacterized conser 98.6 3.7E-08 8.1E-13 86.0 4.0 108 192-302 47-156 (418)
31 KOG0472 Leucine-rich repeat pr 98.5 2.4E-08 5.2E-13 90.7 -0.2 63 94-167 224-286 (565)
32 KOG4237 Extracellular matrix p 98.5 1.4E-08 3.1E-13 91.9 -1.9 89 344-445 271-359 (498)
33 KOG1259 Nischarin, modulator o 98.4 2.2E-07 4.7E-12 81.4 3.2 232 182-447 174-414 (490)
34 KOG3864 Uncharacterized conser 98.4 3E-07 6.5E-12 76.0 3.8 85 319-416 103-187 (221)
35 KOG3864 Uncharacterized conser 98.3 4.6E-07 1E-11 74.9 3.9 85 294-384 103-187 (221)
36 COG5238 RNA1 Ran GTPase-activa 98.3 1.3E-05 2.8E-10 69.6 12.4 116 267-384 185-314 (388)
37 PRK15370 E3 ubiquitin-protein 98.3 3.6E-06 7.8E-11 86.8 10.5 31 99-133 200-230 (754)
38 KOG2982 Uncharacterized conser 98.3 5.8E-07 1.2E-11 78.7 3.3 209 155-384 44-260 (418)
39 PF14580 LRR_9: Leucine-rich r 98.2 1.3E-06 2.8E-11 72.9 4.3 81 292-384 19-99 (175)
40 PRK15370 E3 ubiquitin-protein 98.2 8.1E-06 1.8E-10 84.2 9.7 116 25-200 178-293 (754)
41 PF14580 LRR_9: Leucine-rich r 98.2 2.6E-07 5.6E-12 77.1 -1.1 104 267-384 19-124 (175)
42 KOG1259 Nischarin, modulator o 98.1 2.1E-06 4.6E-11 75.3 3.0 34 243-276 375-408 (490)
43 KOG4658 Apoptotic ATPase [Sign 97.9 4.7E-06 1E-10 87.4 2.2 230 97-362 544-785 (889)
44 KOG4308 LRR-containing protein 97.8 7.7E-06 1.7E-10 79.9 1.8 343 100-473 89-474 (478)
45 KOG4658 Apoptotic ATPase [Sign 97.6 1.5E-05 3.2E-10 83.7 1.1 257 97-388 522-785 (889)
46 KOG1859 Leucine-rich repeat pr 97.5 6.4E-06 1.4E-10 80.9 -3.3 243 207-480 75-330 (1096)
47 PF13855 LRR_8: Leucine rich r 97.4 3.9E-05 8.4E-10 52.2 0.5 59 98-166 1-59 (61)
48 KOG4308 LRR-containing protein 97.4 2.1E-05 4.6E-10 76.9 -1.7 94 346-445 203-303 (478)
49 PF13855 LRR_8: Leucine rich r 97.3 6.5E-05 1.4E-09 51.0 0.3 39 263-302 21-59 (61)
50 KOG0617 Ras suppressor protein 97.1 2.9E-06 6.3E-11 68.3 -9.2 61 93-165 28-88 (264)
51 KOG1859 Leucine-rich repeat pr 97.0 7.3E-05 1.6E-09 73.8 -2.1 202 183-416 77-290 (1096)
52 smart00367 LRR_CC Leucine-rich 96.8 0.0013 2.8E-08 35.6 2.6 24 404-427 1-24 (26)
53 smart00367 LRR_CC Leucine-rich 96.7 0.0023 5E-08 34.6 2.9 24 372-395 1-24 (26)
54 PLN03150 hypothetical protein; 96.6 0.0055 1.2E-07 63.0 7.1 82 294-384 420-501 (623)
55 PLN03150 hypothetical protein; 96.5 0.006 1.3E-07 62.8 7.0 108 269-385 420-527 (623)
56 KOG0617 Ras suppressor protein 96.5 3.6E-05 7.8E-10 62.1 -7.1 59 95-165 53-111 (264)
57 KOG2739 Leucine-rich acidic nu 96.3 0.00046 1E-08 60.0 -2.1 87 345-441 63-152 (260)
58 PRK15386 type III secretion pr 96.2 0.011 2.4E-07 56.2 6.0 135 188-356 50-186 (426)
59 KOG2123 Uncharacterized conser 96.0 0.0012 2.5E-08 58.0 -1.3 112 266-392 18-133 (388)
60 KOG2739 Leucine-rich acidic nu 95.6 0.0034 7.3E-08 54.8 0.3 83 372-464 64-147 (260)
61 PF12799 LRR_4: Leucine Rich r 95.5 0.024 5.3E-07 35.2 3.8 17 288-304 20-36 (44)
62 KOG2123 Uncharacterized conser 95.5 0.0049 1.1E-07 54.2 0.6 35 95-132 38-72 (388)
63 COG4886 Leucine-rich repeat (L 95.5 0.012 2.6E-07 57.3 3.4 173 122-328 115-288 (394)
64 KOG1644 U2-associated snRNP A' 95.3 0.02 4.3E-07 48.1 3.6 89 345-443 62-151 (233)
65 PF12799 LRR_4: Leucine Rich r 95.0 0.056 1.2E-06 33.5 4.3 33 99-133 2-34 (44)
66 PRK15386 type III secretion pr 94.6 0.058 1.3E-06 51.4 5.3 144 257-443 42-188 (426)
67 KOG1644 U2-associated snRNP A' 94.5 0.032 6.9E-07 46.9 2.9 62 265-328 62-124 (233)
68 PF13516 LRR_6: Leucine Rich r 93.5 0.06 1.3E-06 28.3 1.8 21 292-312 2-22 (24)
69 COG4886 Leucine-rich repeat (L 93.5 0.065 1.4E-06 52.2 3.3 78 243-327 141-219 (394)
70 PF13516 LRR_6: Leucine Rich r 92.9 0.084 1.8E-06 27.7 1.8 10 374-383 3-12 (24)
71 KOG0531 Protein phosphatase 1, 92.5 0.026 5.7E-07 55.2 -0.9 106 95-227 92-197 (414)
72 KOG0531 Protein phosphatase 1, 92.3 0.03 6.5E-07 54.8 -0.8 36 407-446 234-269 (414)
73 KOG3763 mRNA export factor TAP 89.7 0.56 1.2E-05 45.9 4.9 93 371-473 216-313 (585)
74 smart00368 LRR_RI Leucine rich 88.5 0.74 1.6E-05 25.2 2.9 23 292-314 2-24 (28)
75 KOG4579 Leucine-rich repeat (L 88.5 0.18 3.9E-06 39.8 0.6 37 290-328 75-111 (177)
76 KOG4579 Leucine-rich repeat (L 87.3 0.26 5.6E-06 38.9 0.9 107 319-447 29-138 (177)
77 smart00368 LRR_RI Leucine rich 86.1 1.1 2.4E-05 24.5 2.8 23 98-120 2-24 (28)
78 PF13504 LRR_7: Leucine rich r 81.7 1 2.2E-05 21.3 1.3 12 433-444 2-13 (17)
79 KOG3763 mRNA export factor TAP 80.9 2.6 5.7E-05 41.5 4.8 84 290-379 216-307 (585)
80 PF13306 LRR_5: Leucine rich r 79.6 1.5 3.3E-05 34.5 2.5 13 21-33 8-20 (129)
81 PF13306 LRR_5: Leucine rich r 74.8 1.2 2.7E-05 35.1 0.6 35 264-300 32-66 (129)
82 KOG0532 Leucine-rich repeat (L 70.6 0.85 1.8E-05 44.9 -1.4 130 262-416 116-245 (722)
83 KOG0532 Leucine-rich repeat (L 63.3 1.2 2.7E-05 43.9 -1.9 62 93-167 116-177 (722)
84 PF00560 LRR_1: Leucine Rich R 62.1 5.3 0.00011 20.2 1.2 13 433-445 1-13 (22)
85 PF07723 LRR_2: Leucine Rich R 49.7 17 0.00038 19.4 2.0 8 218-225 2-9 (26)
86 smart00369 LRR_TYP Leucine-ric 49.7 13 0.00029 19.5 1.6 15 432-446 2-16 (26)
87 smart00370 LRR Leucine-rich re 49.7 13 0.00029 19.5 1.6 15 432-446 2-16 (26)
88 KOG3735 Tropomodulin and leiom 46.2 50 0.0011 30.7 5.4 20 404-424 254-273 (353)
89 smart00365 LRR_SD22 Leucine-ri 34.1 42 0.00091 18.0 1.9 13 292-304 2-14 (26)
90 KOG3735 Tropomodulin and leiom 28.8 1.2E+02 0.0026 28.4 5.0 81 233-314 189-277 (353)
91 smart00364 LRR_BAC Leucine-ric 20.8 49 0.0011 17.8 0.7 14 432-445 2-15 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=1.3e-30 Score=232.97 Aligned_cols=364 Identities=23% Similarity=0.334 Sum_probs=309.3
Q ss_pred cccccceeccccCccccchhHHHhh-hhccc---cccCCCCcccccc-------------ccC-CCccEEEec-ccCCCh
Q 011445 52 FLPSTIKSLKLQPVLERDAFFLIRR-IGRNL---METVQPPILTSSY-------------YSS-FNLRSLSLV-LDVITD 112 (485)
Q Consensus 52 ~~~~~l~~l~l~~~~~~~~~~l~~~-~~~~~---~~~~~~~~~~~~~-------------~~~-~~L~~L~L~-~~~~~~ 112 (485)
.+|+++....++++..+.+-....+ +.|+. ++.-|..+|...+ ..+ -.|+.|.+. +..+.+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ 153 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD 153 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc
Confidence 4788898889999888887777766 66763 2333554433222 112 368889998 456778
Q ss_pred HHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhc-CCCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCC
Q 011445 113 ELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKG 191 (485)
Q Consensus 113 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 191 (485)
..+..+...||++++|.+.+| ..+++.....+ ..|+.|++|++..|. .+++..++.++..|++
T Consensus 154 sslrt~~~~CpnIehL~l~gc--------~~iTd~s~~sla~~C~~l~~l~L~~c~--------~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 154 SSLRTFASNCPNIEHLALYGC--------KKITDSSLLSLARYCRKLRHLNLHSCS--------SITDVSLKYLAEGCRK 217 (483)
T ss_pred chhhHHhhhCCchhhhhhhcc--------eeccHHHHHHHHHhcchhhhhhhcccc--------hhHHHHHHHHHHhhhh
Confidence 888888889999999999999 77888887777 489999999998775 4788889999999999
Q ss_pred ccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhh-CCCCCC
Q 011445 192 LESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLE 270 (485)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~ 270 (485)
|+.|++++|+.+...++..+..++..++.+...||.......+..+..+++.+.++++..|..+++.++..+. .+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 9999999999999999999999999999998889988888999888899999999999999989998877666 578999
Q ss_pred EEEccCCCCCcHHHhhccc-CCCCCCEEEcCCC-CCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCC
Q 011445 271 VLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS 348 (485)
Q Consensus 271 ~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 348 (485)
.|+.++|..+++..+..++ ++++|+.|.+..| ++++.++..+.++|+.|+.+++.+|..+.+..+..++ ..++.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls----~~C~~ 373 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS----RNCPR 373 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc----cCCch
Confidence 9999999999998888875 7899999999998 7999999999999999999999999977777788887 78999
Q ss_pred ccEEecCCCCCCCHHHHHHHHh---hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHh
Q 011445 349 LTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW 425 (485)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 425 (485)
|+++.+++|..++|+++..+.. ....|+.+++.+|+.+++..++.+.. |++|+.+++.+|.+++..++..
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~-------c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI-------CRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh-------CcccceeeeechhhhhhhhhHH
Confidence 9999999999999998887753 35789999999999999999988887 9999999999999999999999
Q ss_pred hcCCCCCCceEEeeccee
Q 011445 426 VKRPSFRGLHWLGIGQTR 443 (485)
Q Consensus 426 l~~~~~~~L~~L~l~~~~ 443 (485)
+. ..+|+++...+..-.
T Consensus 447 ~~-~~lp~i~v~a~~a~~ 463 (483)
T KOG4341|consen 447 FA-THLPNIKVHAYFAPV 463 (483)
T ss_pred HH-hhCccceehhhccCC
Confidence 96 789999888775533
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.94 E-value=4.1e-27 Score=210.77 Aligned_cols=341 Identities=21% Similarity=0.305 Sum_probs=293.8
Q ss_pred CCCccEEEecc--cCCChHHHHHHHhcC-CCCcEEecCCCCCCCcccccccChhHhhhc-CCCCCcceEEeCCccccCCC
Q 011445 97 SFNLRSLSLVL--DVITDELLITITASL-PFLVELDLEDRPNTEPLARLDLTSSGLQSL-GSCHHLTGLSLTRCRHNHQG 172 (485)
Q Consensus 97 ~~~L~~L~L~~--~~~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~ 172 (485)
-.+-+++++-. ..+....+..+.++| ..|++|.+.|| ..+.+..+..+ ..+|++++|++.+|.
T Consensus 109 ~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~--------r~v~~sslrt~~~~CpnIehL~l~gc~----- 175 (483)
T KOG4341|consen 109 GSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGC--------RAVGDSSLRTFASNCPNIEHLALYGCK----- 175 (483)
T ss_pred cccceeeehhcchhcCCCcceehHhhhhcccccccccccc--------ccCCcchhhHHhhhCCchhhhhhhcce-----
Confidence 34566666652 122223344444444 58999999999 77777777766 589999999998875
Q ss_pred ccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccC
Q 011445 173 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC 252 (485)
Q Consensus 173 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 252 (485)
.+++..+..+...|++|+.|++..|..+++..+..+...|++|+.|+++.|+.+...++..+.+.+..++.+...+|
T Consensus 176 ---~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 176 ---KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred ---eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 58999999999999999999999999999999999999999999999999998988899999999999999988899
Q ss_pred CCCCHHHHHHhh-CCCCCCEEEccCCCCCcHHHhhccc-CCCCCCEEEcCCC-CCChHHHHHHHhcCCCccEEEccCCCC
Q 011445 253 RLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKR 329 (485)
Q Consensus 253 ~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~ 329 (485)
...+.+.+..+. .++.+.++++..|..++|.++..++ .+..|+.|..+++ .+++..+..+.+.+++|+.|.+..|.+
T Consensus 253 ~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~ 332 (483)
T KOG4341|consen 253 LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ 332 (483)
T ss_pred ccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch
Confidence 888887776665 5788888888899999999877775 6889999999987 899999999999999999999999999
Q ss_pred CChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcE
Q 011445 330 VTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRR 409 (485)
Q Consensus 330 l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~ 409 (485)
+++.++..+. ..++.|+.+++..|..+++..+..+..+|+.|++|.+++|..++|.++..+....- ....|+.
T Consensus 333 fsd~~ft~l~----rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c---~~~~l~~ 405 (483)
T KOG4341|consen 333 FSDRGFTMLG----RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC---SLEGLEV 405 (483)
T ss_pred hhhhhhhhhh----cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc---cccccce
Confidence 9999999988 78999999999999888888888898899999999999999999999888876333 5788999
Q ss_pred EeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCceE
Q 011445 410 LDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTF 464 (485)
Q Consensus 410 L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 464 (485)
+.+++|+.+++..+..+. .|++|+.+++-+|+-- ..+.+..+....|.+++
T Consensus 406 lEL~n~p~i~d~~Le~l~--~c~~Leri~l~~~q~v--tk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 406 LELDNCPLITDATLEHLS--ICRNLERIELIDCQDV--TKEAISRFATHLPNIKV 456 (483)
T ss_pred eeecCCCCchHHHHHHHh--hCcccceeeeechhhh--hhhhhHHHHhhCcccee
Confidence 999999999999999997 8999999999888854 68899999999998873
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.8e-21 Score=209.03 Aligned_cols=278 Identities=15% Similarity=0.093 Sum_probs=125.9
Q ss_pred HHHHhhccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccch-h--HHHhhhhccccccCCCCcccccc
Q 011445 18 AIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDA-F--FLIRRIGRNLMETVQPPILTSSY 94 (485)
Q Consensus 18 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~--~l~~~~~~~~~~~~~~~~~~~~~ 94 (485)
...+..+++|+.|+|++|.+....... ++. ....|+.+++++...... + .+..++.+.+..+......+..+
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~----~~~-~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~ 160 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDD----IFT-TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI 160 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChH----Hhc-cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHH
Confidence 445666888888888876642222211 111 223477777765433211 1 11111333333332222222345
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCcc
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 174 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 174 (485)
.++++|++|++++|.+....+..+.. +++|++|++++| .+.......+..+++|+.|+++++.
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n---------~l~~~~p~~l~~l~~L~~L~L~~n~------- 223 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASN---------QLVGQIPRELGQMKSLKWIYLGYNN------- 223 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCC---------CCcCcCChHHcCcCCccEEECcCCc-------
Confidence 66677777777766554443444433 667777777664 2332233445556666666665543
Q ss_pred CccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCC
Q 011445 175 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 254 (485)
Q Consensus 175 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 254 (485)
+.......+ ..+++|+.|+++++. +... +...+..+++|+.|+++++.. .. .+......+++|+.|++++|.
T Consensus 224 --l~~~~p~~l-~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l-~~-~~p~~l~~l~~L~~L~Ls~n~- 295 (968)
T PLN00113 224 --LSGEIPYEI-GGLTSLNHLDLVYNN-LTGP-IPSSLGNLKNLQYLFLYQNKL-SG-PIPPSIFSLQKLISLDLSDNS- 295 (968)
T ss_pred --cCCcCChhH-hcCCCCCEEECcCce-eccc-cChhHhCCCCCCEEECcCCee-ec-cCchhHhhccCcCEEECcCCe-
Confidence 111111111 245566666666542 1111 112234455666666655531 11 011112234555566655543
Q ss_pred CCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCC
Q 011445 255 ITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGC 327 (485)
Q Consensus 255 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 327 (485)
+.......+.++++|+.|+++++ .+.......+..+++|+.|++.+|.+.......+. .+++|+.|+++++
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n 366 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTN 366 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCC
Confidence 22222223344555555555553 23222223334455555555555544332222222 2445555555544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=9.1e-21 Score=205.01 Aligned_cols=395 Identities=16% Similarity=0.088 Sum_probs=201.5
Q ss_pred HHHhhccccceeeeeecCCCcccccccchhhhhcccccceeccccCcccc-chhHHH----hhhhccccccCCCCccccc
Q 011445 19 IMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLER-DAFFLI----RRIGRNLMETVQPPILTSS 93 (485)
Q Consensus 19 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~l~----~~~~~~~~~~~~~~~~~~~ 93 (485)
.++..+++|+.|++++|.+...... .....++.+++++.... ..+..+ .++.+.+.++......+..
T Consensus 112 ~~~~~l~~L~~L~Ls~n~l~~~~p~--------~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 112 DIFTTSSSLRYLNLSNNNFTGSIPR--------GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred HHhccCCCCCEEECcCCccccccCc--------cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 4566799999999998765222221 11234777777765432 222211 2244445444322222345
Q ss_pred cccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCc
Q 011445 94 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 173 (485)
Q Consensus 94 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 173 (485)
+.++++|++|++++|.+....+..+. .+++|++|++++| .+.......+..+++|++|++++|.
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n---------~l~~~~p~~l~~l~~L~~L~L~~n~------ 247 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYN---------NLSGEIPYEIGGLTSLNHLDLVYNN------ 247 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCC---------ccCCcCChhHhcCCCCCEEECcCce------
Confidence 67788888888887776554444454 4788888888884 3444444456677778888887653
Q ss_pred cCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCC
Q 011445 174 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 253 (485)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 253 (485)
+....... ...+++|+.|+++++. +... +...+..+++|+.|++++|. +.. .+......+++|+.|+++++.
T Consensus 248 ---l~~~~p~~-l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 248 ---LTGPIPSS-LGNLKNLQYLFLYQNK-LSGP-IPPSIFSLQKLISLDLSDNS-LSG-EIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred ---eccccChh-HhCCCCCCEEECcCCe-eecc-CchhHhhccCcCEEECcCCe-ecc-CCChhHcCCCCCcEEECCCCc
Confidence 22111111 2345667777776642 2111 11113345666666666653 111 122223445666666666543
Q ss_pred CCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCC------------------------hHHH
Q 011445 254 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT------------------------DSGL 309 (485)
Q Consensus 254 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~------------------------~~~~ 309 (485)
+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+. ....
T Consensus 320 -~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 320 -FTGKIPVALTSLPRLQVLQLWSN-KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred -cCCcCChhHhcCCCCCEEECcCC-CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence 22222233445566666666553 333222233344555555555555433 2221
Q ss_pred HHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHH
Q 011445 310 SILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDA 389 (485)
Q Consensus 310 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 389 (485)
..+. .+++|+.|++++|. ++......+. .++.|+.|+++++ .++...... ...+++|+.|++++|. +...
T Consensus 398 ~~~~-~~~~L~~L~L~~n~-l~~~~p~~~~-----~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~n~-~~~~ 467 (968)
T PLN00113 398 KSLG-ACRSLRRVRLQDNS-FSGELPSEFT-----KLPLVYFLDISNN-NLQGRINSR-KWDMPSLQMLSLARNK-FFGG 467 (968)
T ss_pred HHHh-CCCCCCEEECcCCE-eeeECChhHh-----cCCCCCEEECcCC-cccCccChh-hccCCCCcEEECcCce-eeee
Confidence 2222 25556666665554 3221111122 4556666666654 333221111 1245667777776665 2111
Q ss_pred HHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-EeccC
Q 011445 390 SVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDG 468 (485)
Q Consensus 390 ~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 468 (485)
+.... ..++|+.|++++| +++......+. .+++|+.|++++|.+.....+.+ ...+.++ +.+.+
T Consensus 468 -~p~~~-------~~~~L~~L~ls~n-~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~ 532 (968)
T PLN00113 468 -LPDSF-------GSKRLENLDLSRN-QFSGAVPRKLG--SLSELMQLKLSENKLSGEIPDEL----SSCKKLVSLDLSH 532 (968)
T ss_pred -cCccc-------ccccceEEECcCC-ccCCccChhhh--hhhccCEEECcCCcceeeCChHH----cCccCCCEEECCC
Confidence 00011 2467778888775 45443333333 56788888888888653222222 2233443 56777
Q ss_pred cccc
Q 011445 469 CEIG 472 (485)
Q Consensus 469 ~~~~ 472 (485)
|.+.
T Consensus 533 N~l~ 536 (968)
T PLN00113 533 NQLS 536 (968)
T ss_pred Cccc
Confidence 6665
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.5e-21 Score=179.70 Aligned_cols=381 Identities=18% Similarity=0.117 Sum_probs=205.4
Q ss_pred hHHHHhhccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHH--Hh---hhhccccccCCCCccc
Q 011445 17 LAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFL--IR---RIGRNLMETVQPPILT 91 (485)
Q Consensus 17 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l--~~---~~~~~~~~~~~~~~~~ 91 (485)
....-..|++...+-.... ......+-+.+...+|...+.|++++....+..-. .+ ++..++..+....+ +
T Consensus 43 ~~~cpa~c~c~~~lldcs~---~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I-P 118 (873)
T KOG4194|consen 43 LSECPATCPCNTRLLDCSD---RELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI-P 118 (873)
T ss_pred cccCCCcCCCCceeeecCc---cccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhc-c
Confidence 3344566776555443321 22233333344445777778888887654332211 11 12222222221111 0
Q ss_pred cccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCC
Q 011445 92 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ 171 (485)
Q Consensus 92 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 171 (485)
.......+|+.|+|.+|.++...-+.+. .+|.|+.|||+. +.++......+..-.++++|+|+++.
T Consensus 119 ~f~~~sghl~~L~L~~N~I~sv~se~L~-~l~alrslDLSr---------N~is~i~~~sfp~~~ni~~L~La~N~---- 184 (873)
T KOG4194|consen 119 RFGHESGHLEKLDLRHNLISSVTSEELS-ALPALRSLDLSR---------NLISEIPKPSFPAKVNIKKLNLASNR---- 184 (873)
T ss_pred cccccccceeEEeeeccccccccHHHHH-hHhhhhhhhhhh---------chhhcccCCCCCCCCCceEEeecccc----
Confidence 0011123455666655555444444443 256666666665 23333333334444566666666543
Q ss_pred CccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccc
Q 011445 172 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW 251 (485)
Q Consensus 172 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 251 (485)
+++.....+. .+.+|..|.++++ .++.-... .++++|+|+.|++..+..-.... ..++.++.|+.|.+..
T Consensus 185 -----It~l~~~~F~-~lnsL~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnrN~irive~--ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 185 -----ITTLETGHFD-SLNSLLTLKLSRN-RITTLPQR-SFKRLPKLESLDLNRNRIRIVEG--LTFQGLPSLQNLKLQR 254 (873)
T ss_pred -----cccccccccc-ccchheeeecccC-cccccCHH-Hhhhcchhhhhhccccceeeehh--hhhcCchhhhhhhhhh
Confidence 3332222222 3346666777663 33332222 25556777777777664211111 1234456666666654
Q ss_pred CCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCC
Q 011445 252 CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT 331 (485)
Q Consensus 252 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 331 (485)
+. +....-.++..+.++++|++.. +.+....-..+-.++.|+.|+++.|.|......... .+++|+.|+++++. ++
T Consensus 255 N~-I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~-i~ 330 (873)
T KOG4194|consen 255 ND-ISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNR-IT 330 (873)
T ss_pred cC-cccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccc-cc
Confidence 32 2211112244567777777766 345444444455678888888888765554444443 37889999988775 33
Q ss_pred hhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCC---CCCHHHHHHHHhhCCCCcCCCCCc
Q 011445 332 DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF---YVTDASVEALARKQPDQEKSKQLR 408 (485)
Q Consensus 332 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~---~l~~~~~~~l~~~~~~~~~~~~L~ 408 (485)
.-.-..+. .+..|+.|+++++ .++...-..+ ..+.+|++|++++|. .+.|. -..+. ++++|+
T Consensus 331 ~l~~~sf~-----~L~~Le~LnLs~N-si~~l~e~af-~~lssL~~LdLr~N~ls~~IEDa-a~~f~-------gl~~Lr 395 (873)
T KOG4194|consen 331 RLDEGSFR-----VLSQLEELNLSHN-SIDHLAEGAF-VGLSSLHKLDLRSNELSWCIEDA-AVAFN-------GLPSLR 395 (873)
T ss_pred cCChhHHH-----HHHHhhhhccccc-chHHHHhhHH-HHhhhhhhhcCcCCeEEEEEecc-hhhhc-------cchhhh
Confidence 22222222 3458888888884 5554332222 345789999998876 23442 22222 588999
Q ss_pred EEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCC
Q 011445 409 RLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 447 (485)
Q Consensus 409 ~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 447 (485)
+|.+.| +++....-+.+. .+++|++|++.+|.+..+
T Consensus 396 kL~l~g-Nqlk~I~krAfs--gl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 396 KLRLTG-NQLKSIPKRAFS--GLEALEHLDLGDNAIASI 431 (873)
T ss_pred heeecC-ceeeecchhhhc--cCcccceecCCCCcceee
Confidence 999998 688887777776 889999999999987755
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=2.7e-21 Score=180.39 Aligned_cols=304 Identities=20% Similarity=0.139 Sum_probs=199.6
Q ss_pred CCccccccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCc
Q 011445 87 PPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC 166 (485)
Q Consensus 87 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 166 (485)
.++....+.-++.|+.|||+.|.++......+.+ -+++++|+|++ +.|++.+...+..+.+|..|.|+++
T Consensus 138 ~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~-~~ni~~L~La~---------N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 138 SSVTSEELSALPALRSLDLSRNLISEIPKPSFPA-KVNIKKLNLAS---------NRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCC-CCCceEEeecc---------ccccccccccccccchheeeecccC
Confidence 3333344566788999999987776554433432 47899999998 6788877778888889999999875
Q ss_pred cccCCCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCC--CCCHHHHHHHHcCCCCc
Q 011445 167 RHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS--FLSDLAFHDLTGVPCAL 244 (485)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L 244 (485)
. ++.-... .+..+++|+.|++..+ .+....... +.++++|+.|.+..+. .+.+..+ -.+.++
T Consensus 208 r---------ittLp~r-~Fk~L~~L~~LdLnrN-~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~F----y~l~km 271 (873)
T KOG4194|consen 208 R---------ITTLPQR-SFKRLPKLESLDLNRN-RIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAF----YGLEKM 271 (873)
T ss_pred c---------ccccCHH-Hhhhcchhhhhhcccc-ceeeehhhh-hcCchhhhhhhhhhcCcccccCcce----eeeccc
Confidence 4 3333222 2346788999998874 333222222 5677899999888773 2333333 346788
Q ss_pred cEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEc
Q 011445 245 VEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCL 324 (485)
Q Consensus 245 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l 324 (485)
++|+++.+. +....-..+.+++.|+.|+++. +.+.........-+++|++|+++.|.++......+.- +..|++|.+
T Consensus 272 e~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~-L~~Le~LnL 348 (873)
T KOG4194|consen 272 EHLNLETNR-LQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV-LSQLEELNL 348 (873)
T ss_pred ceeecccch-hhhhhcccccccchhhhhccch-hhhheeecchhhhcccceeEeccccccccCChhHHHH-HHHhhhhcc
Confidence 999998754 4444444566889999999988 5665555555667899999999998776554444432 677999999
Q ss_pred cCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCH---HHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCC
Q 011445 325 RGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD---DGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ 401 (485)
Q Consensus 325 ~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 401 (485)
+.+. ++...-..+ ..+++|++|++.++ .++. ++... ...++.|+.|.+.+|. +....-+++.
T Consensus 349 s~Ns-i~~l~e~af-----~~lssL~~LdLr~N-~ls~~IEDaa~~-f~gl~~LrkL~l~gNq-lk~I~krAfs------ 413 (873)
T KOG4194|consen 349 SHNS-IDHLAEGAF-----VGLSSLHKLDLRSN-ELSWCIEDAAVA-FNGLPSLRKLRLTGNQ-LKSIPKRAFS------ 413 (873)
T ss_pred cccc-hHHHHhhHH-----HHhhhhhhhcCcCC-eEEEEEecchhh-hccchhhhheeecCce-eeecchhhhc------
Confidence 8876 433221111 35679999999874 3321 22222 3458999999998885 6655555555
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEee
Q 011445 402 EKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGI 439 (485)
Q Consensus 402 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l 439 (485)
++++|++|++.+ +.+.......+. .. .|+.|.+
T Consensus 414 -gl~~LE~LdL~~-NaiaSIq~nAFe--~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 414 -GLEALEHLDLGD-NAIASIQPNAFE--PM-ELKELVM 446 (873)
T ss_pred -cCcccceecCCC-Ccceeecccccc--cc-hhhhhhh
Confidence 488999999988 454443344433 12 5555554
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.4e-16 Score=150.53 Aligned_cols=192 Identities=25% Similarity=0.293 Sum_probs=101.8
Q ss_pred CCccEEEcccCCCCCHHHHHH----hhCC-CCCCEEEccCCCCCcHHH----hhcccCCCCCCEEEcCCCCCChHHHHHH
Q 011445 242 CALVEVRLLWCRLITSETVKK----LASS-RNLEVLDLGGCKSIADTC----LRSISCLRKLTALNLTGADITDSGLSIL 312 (485)
Q Consensus 242 ~~L~~L~l~~~~~l~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~----l~~l~~~~~L~~L~l~~~~l~~~~~~~l 312 (485)
++|++|++++|. +.+.+... +..+ ++|+.|++++| .++... ...+..+++|++|++++|.+.+.++..+
T Consensus 108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 185 (319)
T cd00116 108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRAL 185 (319)
T ss_pred CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHH
Confidence 445555555543 33222222 2234 56666666664 333221 1223355667777777666665554443
Q ss_pred Hh---cCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhC----CCCcEEEecCCCC
Q 011445 313 AQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG----IGIIDLCVRSCFY 385 (485)
Q Consensus 313 ~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~~ 385 (485)
.. .+++|+.|++++|. +++.+...+.. ....+++|++|++++| .+++.++..+...+ +.|++|++++|.
T Consensus 186 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~-~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~- 261 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNG-LTDEGASALAE-TLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND- 261 (319)
T ss_pred HHHHHhCCCCCEEeccCCc-cChHHHHHHHH-HhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC-
Confidence 32 23467777777664 55444433321 0024567777777775 56665565555443 577777777764
Q ss_pred CCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcC--CCC-CCceEEeeccee
Q 011445 386 VTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR--PSF-RGLHWLGIGQTR 443 (485)
Q Consensus 386 l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~--~~~-~~L~~L~l~~~~ 443 (485)
+++.+...+....+ .+++|+.+++++ +.+++.+...+.. ... +.|+.+++.+++
T Consensus 262 i~~~~~~~l~~~~~---~~~~L~~l~l~~-N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 262 ITDDGAKDLAEVLA---EKESLLELDLRG-NKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCcHHHHHHHHHHh---cCCCccEEECCC-CCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 66555555544333 456777777777 3666554333321 122 467777776654
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=4.9e-16 Score=146.77 Aligned_cols=282 Identities=21% Similarity=0.187 Sum_probs=183.0
Q ss_pred cCcHhHHHHhhcCCCccEEEeCCCCCCCHHHH---HHHHHhCCCCcEEEecCCCCCC--HHH---HHHHHcCCCCccEEE
Q 011445 177 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGF---AAILLSCHSLKKFEVRSASFLS--DLA---FHDLTGVPCALVEVR 248 (485)
Q Consensus 177 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--~~~---~~~~~~~~~~L~~L~ 248 (485)
+++.....+.....+|+.|+++++ .+++.+. ...+...++++.|+++++. +. ... +......+++|+.|+
T Consensus 10 l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~ 87 (319)
T cd00116 10 LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELD 87 (319)
T ss_pred ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEE
Confidence 333333344444566888888875 4444433 3334455678888887764 23 222 223334577899999
Q ss_pred cccCCCCCHHHHHHhhCC---CCCCEEEccCCCCCcHHHhhc----ccCC-CCCCEEEcCCCCCChHHHHHH---HhcCC
Q 011445 249 LLWCRLITSETVKKLASS---RNLEVLDLGGCKSIADTCLRS----ISCL-RKLTALNLTGADITDSGLSIL---AQGNL 317 (485)
Q Consensus 249 l~~~~~l~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~l~~----l~~~-~~L~~L~l~~~~l~~~~~~~l---~~~~~ 317 (485)
+++|. +.......+..+ ++|++|+++++ .+++.+... +..+ ++|+.|++++|.++..+...+ ...++
T Consensus 88 l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 88 LSDNA-LGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred ccCCC-CChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 98876 333333333333 55999999996 566444433 3456 899999999998886544433 33567
Q ss_pred CccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHH---hhCCCCcEEEecCCCCCCHHHHHHH
Q 011445 318 PIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVTDASVEAL 394 (485)
Q Consensus 318 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l 394 (485)
+|++|++++|. +++.++..+.... ...++|+.|++++| .+++.+...+. ..+++|++|++++|. +++.++..+
T Consensus 166 ~L~~L~l~~n~-l~~~~~~~l~~~l-~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l 241 (319)
T cd00116 166 DLKELNLANNG-IGDAGIRALAEGL-KANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAAL 241 (319)
T ss_pred CcCEEECcCCC-CchHHHHHHHHHH-HhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHH
Confidence 89999999986 7766655443110 23579999999997 77776655543 346899999999985 888888777
Q ss_pred HhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhc--CCCCCCceEEeecceeccCCCchhHHHHhhhC-CCce-EeccCc
Q 011445 395 ARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLASKGNPVITEIHNER-PWLT-FCLDGC 469 (485)
Q Consensus 395 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~l~-~~~~~~ 469 (485)
...... ..+.|++|++++| .+++.+...+. ...+++|+.+++++|.+.......++...... +.++ +++..+
T Consensus 242 ~~~~~~--~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 242 ASALLS--PNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHhc--cCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 762210 1479999999997 78765544332 13568999999999998865445555554444 4554 455443
No 9
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.6e-17 Score=143.04 Aligned_cols=283 Identities=19% Similarity=0.215 Sum_probs=138.4
Q ss_pred hhcccccceeccccCccccchhHHHhh-hhccccccCCCCccccccccCCCccEEEecccCCChHHHHHHHhcCCCCcEE
Q 011445 50 IFFLPSTIKSLKLQPVLERDAFFLIRR-IGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVEL 128 (485)
Q Consensus 50 ~~~~~~~l~~l~l~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L 128 (485)
|..+|.++..-+|+++..+++..+..+ +.|+-.+.- -..-+.+|+....+.......+.+ ..+..+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~d-----------e~lW~~lDl~~r~i~p~~l~~l~~--rgV~v~ 164 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASD-----------ESLWQTLDLTGRNIHPDVLGRLLS--RGVIVF 164 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccc-----------ccceeeeccCCCccChhHHHHHHh--CCeEEE
Confidence 567899988889999999999988888 656544332 123466778777776666666654 334444
Q ss_pred ecCCCCCCCcccccccChhHhhhcC--CCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHH
Q 011445 129 DLEDRPNTEPLARLDLTSSGLQSLG--SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDA 206 (485)
Q Consensus 129 ~L~~~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 206 (485)
.+.. ....+..+.... .-..|++||+++.. ++-..+..+...|.+|+.|.+.+. .+++.
T Consensus 165 Rlar---------~~~~~prlae~~~~frsRlq~lDLS~s~---------it~stl~~iLs~C~kLk~lSlEg~-~LdD~ 225 (419)
T KOG2120|consen 165 RLAR---------SFMDQPRLAEHFSPFRSRLQHLDLSNSV---------ITVSTLHGILSQCSKLKNLSLEGL-RLDDP 225 (419)
T ss_pred Ecch---------hhhcCchhhhhhhhhhhhhHHhhcchhh---------eeHHHHHHHHHHHHhhhhcccccc-ccCcH
Confidence 4433 111111111111 11235555554422 344444444445555555555542 33433
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhC-CCCCCEEEccCCCCCcHHHh
Q 011445 207 GFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLAS-SRNLEVLDLGGCKSIADTCL 285 (485)
Q Consensus 207 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~l 285 (485)
....++++ .+|+.|++++|..++..++..+..+|+.|.+|++++|...++..-..+.+ -++|+.|+++||..
T Consensus 226 I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr------ 298 (419)
T KOG2120|consen 226 IVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR------ 298 (419)
T ss_pred HHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh------
Confidence 33333333 45555555555555555555555555555555555554333331111111 24444444444321
Q ss_pred hcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHH
Q 011445 286 RSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGI 365 (485)
Q Consensus 286 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~ 365 (485)
++.+..+..+...||+|..|++++|..+++.-+..+. .++.|++|.++.|..+...-+
T Consensus 299 -----------------nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-----kf~~L~~lSlsRCY~i~p~~~ 356 (419)
T KOG2120|consen 299 -----------------NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-----KFNYLQHLSLSRCYDIIPETL 356 (419)
T ss_pred -----------------hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-----hcchheeeehhhhcCCChHHe
Confidence 3333344444444555555555555444443333333 345555555555544444333
Q ss_pred HHHHhhCCCCcEEEecCCCCCCHHHHHHHHh
Q 011445 366 LTIAAAGIGIIDLCVRSCFYVTDASVEALAR 396 (485)
Q Consensus 366 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 396 (485)
..+ ...|.|.+|++.+| +.|..++.+..
T Consensus 357 ~~l-~s~psl~yLdv~g~--vsdt~mel~~e 384 (419)
T KOG2120|consen 357 LEL-NSKPSLVYLDVFGC--VSDTTMELLKE 384 (419)
T ss_pred eee-ccCcceEEEEeccc--cCchHHHHHHH
Confidence 333 23355555555554 33334444444
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.8e-16 Score=132.50 Aligned_cols=208 Identities=20% Similarity=0.246 Sum_probs=158.7
Q ss_pred CCccEEEcccCCCCCHHHHH-HhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCC-CCChHHHHHHHhcCCCc
Q 011445 242 CALVEVRLLWCRLITSETVK-KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPI 319 (485)
Q Consensus 242 ~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L 319 (485)
..|+.++++... ++...+. .+.+|.+|+.|.+.+ ..+.|.....+++..+|+.|+++.+ .++..++..+..+|..|
T Consensus 185 sRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 357777777633 4444433 244778888888877 4677777777788888888888886 78888888888888888
Q ss_pred cEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCC-CCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhC
Q 011445 320 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMP-GISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ 398 (485)
Q Consensus 320 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 398 (485)
.+|+++-|...++..-..+. +--++|+.|++++|. ++.+..+..+.+.||+|.+|++++|..+++..+..+.+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~----hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-- 336 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVA----HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-- 336 (419)
T ss_pred hhcCchHhhccchhhhHHHh----hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh--
Confidence 88888877644443222222 344788999999873 55666788888899999999999999999977777776
Q ss_pred CCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCceEeccC
Q 011445 399 PDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDG 468 (485)
Q Consensus 399 ~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 468 (485)
++.|++|.++.|..+....+-.+. .-|+|.+|++.+|. .+..+.-+....|.+.+.+..
T Consensus 337 -----f~~L~~lSlsRCY~i~p~~~~~l~--s~psl~yLdv~g~v----sdt~mel~~e~~~~lkin~q~ 395 (419)
T KOG2120|consen 337 -----FNYLQHLSLSRCYDIIPETLLELN--SKPSLVYLDVFGCV----SDTTMELLKEMLSHLKINCQH 395 (419)
T ss_pred -----cchheeeehhhhcCCChHHeeeec--cCcceEEEEecccc----CchHHHHHHHhCcccccccee
Confidence 899999999999999988877775 78999999999988 677777888888887755433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.63 E-value=2.6e-15 Score=163.16 Aligned_cols=130 Identities=23% Similarity=0.284 Sum_probs=60.8
Q ss_pred CCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCC-CCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCC
Q 011445 267 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTI 345 (485)
Q Consensus 267 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 345 (485)
++|+.|+++++..+.. ....+..+++|+.|++.+| .+... .... .+++|+.|++++|..+.. +. ..
T Consensus 778 ~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L~Ls~c~~L~~-----~p----~~ 844 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESLDLSGCSRLRT-----FP----DI 844 (1153)
T ss_pred ccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEEECCCCCcccc-----cc----cc
Confidence 4566666655432221 1222445566666666654 22210 0000 245566666666553321 11 12
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCH
Q 011445 346 SQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV 420 (485)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 420 (485)
.++|+.|+++++ .++... .-...+++|+.|++++|+.++.... -.. .+++|+.+++++|..++.
T Consensus 845 ~~nL~~L~Ls~n-~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~~--~~~------~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 845 STNISDLNLSRT-GIEEVP--WWIEKFSNLSFLDMNGCNNLQRVSL--NIS------KLKHLETVDFSDCGALTE 908 (1153)
T ss_pred ccccCEeECCCC-CCccCh--HHHhcCCCCCEEECCCCCCcCccCc--ccc------cccCCCeeecCCCccccc
Confidence 345666666653 343211 1123456666666666665543221 111 356666666666665543
No 12
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.52 E-value=7.9e-14 Score=139.70 Aligned_cols=242 Identities=25% Similarity=0.419 Sum_probs=120.0
Q ss_pred CCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCC-CCCCCH--HHHHHHHHhCCCCcEEEecCCCCCCH
Q 011445 155 CHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGG-FSKVSD--AGFAAILLSCHSLKKFEVRSASFLSD 231 (485)
Q Consensus 155 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~ 231 (485)
++.|+.|.+.+|. .+.+.++..+...+++|++|++++ +..... .....+...+++|+.|+++.+..+++
T Consensus 187 ~~~L~~l~l~~~~--------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 187 CPLLKRLSLSGCS--------KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred CchhhHhhhcccc--------cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 4555555554432 234444444444555555555554 111111 11222344455555555555544555
Q ss_pred HHHHHHHcCCCCccEEEcccCCCCCHHHHHHhh-CCCCCCEEEccCCCCCcHHHhhcc-cCCCCCCEEEcCCCC----CC
Q 011445 232 LAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSI-SCLRKLTALNLTGAD----IT 305 (485)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~----l~ 305 (485)
.++..+...|++|+.|.+..|..+++.++..+. .++.|++|++++|..+++.++..+ ..|++|+.|.+.... ++
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~ 338 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLT 338 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHH
Confidence 555555555555555555555545555555444 345555555555555544444333 234544444433321 22
Q ss_pred h------------HHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 011445 306 D------------SGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 373 (485)
Q Consensus 306 ~------------~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 373 (485)
+ .........|++++.+.+..+. ..+.+. .+.+.+|+.++ ..+......+.
T Consensus 339 ~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~---------------~~~l~gc~~l~-~~l~~~~~~~~ 401 (482)
T KOG1947|consen 339 DLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL---------------ELSLRGCPNLT-ESLELRLCRSD 401 (482)
T ss_pred HHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch---------------HHHhcCCcccc-hHHHHHhccCC
Confidence 2 2222233334444444444433 322222 23344555554 44444444444
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhc
Q 011445 374 GIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK 427 (485)
Q Consensus 374 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 427 (485)
.++.|.+..|..+++..+..... .+.+++.+++.+|..++......+.
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~ 449 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLAD------SCSNLKDLDLSGCRVITLKSLEGFA 449 (482)
T ss_pred ccceEecccCccccccchHHHhh------hhhccccCCccCcccccchhhhhhh
Confidence 47777777777777777666665 4666777777777777766655443
No 13
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.46 E-value=2.4e-13 Score=136.18 Aligned_cols=256 Identities=29% Similarity=0.401 Sum_probs=167.5
Q ss_pred cCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCC-CCCC--HHHHHHHHcCCCCccEEEcccCC
Q 011445 177 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSA-SFLS--DLAFHDLTGVPCALVEVRLLWCR 253 (485)
Q Consensus 177 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~~~~~L~~L~l~~~~ 253 (485)
........+...++.|+.+.+.+|..+++.++..+...+++|+.|+++++ .... ......+...+++|+.+++.++.
T Consensus 175 ~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 175 LLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred ccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 34444455555577888888888777777666667777788888887762 2221 22223355566778888887777
Q ss_pred CCCHHHHHHhhC-CCCCCEEEccCCCCCcHHHhhccc-CCCCCCEEEcCCC-CCChHHHHHHHhcCCCccEEEccCCC--
Q 011445 254 LITSETVKKLAS-SRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCK-- 328 (485)
Q Consensus 254 ~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~-- 328 (485)
.+++.++..++. |++|+.|.+.+|..+++.++..++ .+++|++|++++| .+++.++..+...|++|+.|.+..+.
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c 334 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGC 334 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCC
Confidence 677777777764 778888877777667777776664 5777888888777 56677777776677777666554433
Q ss_pred -CCChhhHHhHhhhcCCCCC-CccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCC
Q 011445 329 -RVTDKGISHLLCVGGTISQ-SLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQ 406 (485)
Q Consensus 329 -~l~~~~~~~l~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~ 406 (485)
.+++.++.... .... .+..+.+.+|+++++..+.... .......+.+.+|+.++ ..+..... .+.+
T Consensus 335 ~~l~~~~l~~~~----~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~------~~~~ 402 (482)
T KOG1947|consen 335 PSLTDLSLSGLL----TLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLC------RSDS 402 (482)
T ss_pred ccHHHHHHHHhh----ccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhc------cCCc
Confidence 35555544444 2222 5666666666666666555554 22222245666777665 55555454 3455
Q ss_pred CcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 407 LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 407 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
++.|++..|..+++..+.... ..+..++.+++.++...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~-~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLA-DSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHh-hhhhccccCCccCcccc
Confidence 899999999999998888876 22778888888888854
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.44 E-value=1.8e-12 Score=114.94 Aligned_cols=267 Identities=18% Similarity=0.169 Sum_probs=182.6
Q ss_pred hhcCCCccEEEeCCCCCCCHHHHHHHH---HhCCCCcEEEecCCC--CCCH------HHHHHHHcCCCCccEEEcccCCC
Q 011445 186 SEGCKGLESVRLGGFSKVSDAGFAAIL---LSCHSLKKFEVRSAS--FLSD------LAFHDLTGVPCALVEVRLLWCRL 254 (485)
Q Consensus 186 ~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~--~~~~------~~~~~~~~~~~~L~~L~l~~~~~ 254 (485)
......++.++++++ .+.......+. ...++|+..+++... .+.+ ..+......+|+|+.|+++.+-
T Consensus 26 ~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA- 103 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA- 103 (382)
T ss_pred hcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-
Confidence 345678999999995 45555544443 444677777776641 1111 1233334567899999999854
Q ss_pred CCHHHHHHh----hCCCCCCEEEccCCCCCcHHHhhc-------------ccCCCCCCEEEcCCCCCChHHH---HHHHh
Q 011445 255 ITSETVKKL----ASSRNLEVLDLGGCKSIADTCLRS-------------ISCLRKLTALNLTGADITDSGL---SILAQ 314 (485)
Q Consensus 255 l~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~l~~-------------l~~~~~L~~L~l~~~~l~~~~~---~~l~~ 314 (485)
+...+++.+ .++..|++|.+.+| .++..+-.. .+.-++|+.+...+|.+.+.+. ....+
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 566555544 37899999999997 454333222 2356899999999986665544 34455
Q ss_pred cCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhh---CCCCcEEEecCCCCCCHHHH
Q 011445 315 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYVTDASV 391 (485)
Q Consensus 315 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~ 391 (485)
.++.|+.+.+..+. +...++..++.+. ..+++|+.|++..+ -++..+-..+++. .++|++|.+++|. +.+.+.
T Consensus 183 ~~~~leevr~~qN~-I~~eG~~al~eal-~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga 258 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNG-IRPEGVTALAEAL-EHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGA 258 (382)
T ss_pred hccccceEEEeccc-ccCchhHHHHHHH-HhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccc-cccccH
Confidence 67899999998776 6666654433211 37899999999985 6777766666554 5789999999995 877776
Q ss_pred HHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhc--CCCCCCceEEeecceeccCCCchhHHHHhhhCCCce
Q 011445 392 EALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT 463 (485)
Q Consensus 392 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 463 (485)
..+..+... ..|+|+.|.+.+| .++..+...+. ...-|.|+.|++++|.+. ...+.+..++...+...
T Consensus 259 ~a~~~al~~--~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~-e~de~i~ei~~~~~~~~ 328 (382)
T KOG1909|consen 259 IAFVDALKE--SAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLG-EKDEGIDEIASKFDTAH 328 (382)
T ss_pred HHHHHHHhc--cCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccccc-ccchhHHHHHHhccccc
Confidence 666654431 5899999999995 78876655443 234789999999999986 34667777776665443
No 15
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.44 E-value=2.7e-12 Score=113.80 Aligned_cols=203 Identities=20% Similarity=0.235 Sum_probs=100.6
Q ss_pred cCCCccEEEeCCCCC--CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHH------------HHHcCCCCccEEEcccCC
Q 011445 188 GCKGLESVRLGGFSK--VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFH------------DLTGVPCALVEVRLLWCR 253 (485)
Q Consensus 188 ~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------~~~~~~~~L~~L~l~~~~ 253 (485)
.||+|+.|++|++-- -....+..+++.+.+|+.|.+.+|. +...+-. ......++|+.+....+.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 455666666655311 1123344455555666666666553 2221111 112234556666665543
Q ss_pred CCCHHHHHH----hhCCCCCCEEEccCCCCCcHHHh----hcccCCCCCCEEEcCCCCCChHHHHHHHh---cCCCccEE
Q 011445 254 LITSETVKK----LASSRNLEVLDLGGCKSIADTCL----RSISCLRKLTALNLTGADITDSGLSILAQ---GNLPIMNL 322 (485)
Q Consensus 254 ~l~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~l----~~l~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L 322 (485)
+.+.+... +..++.|+.+.+.. +.+...+. ..+.+||.|+.|++.+|.++..+-..+.. .++.|+.|
T Consensus 169 -len~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 169 -LENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred -cccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 33333222 22345666666655 23333332 22346666666666666555554433332 34556666
Q ss_pred EccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCcEEEecCCCCC--CHHHHHHHHh
Q 011445 323 CLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYV--TDASVEALAR 396 (485)
Q Consensus 323 ~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l--~~~~~~~l~~ 396 (485)
++++|- +.+.+..++........|+|+.|.+.++ .++.++...+.. ..|.|+.|++++|. + .+.++..+..
T Consensus 247 ~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~-l~e~de~i~ei~~ 322 (382)
T KOG1909|consen 247 NLGDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR-LGEKDEGIDEIAS 322 (382)
T ss_pred cccccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc-ccccchhHHHHHH
Confidence 666665 5555544444333344566666666664 555544443322 13666666666664 4 5555555555
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=1.1e-12 Score=142.83 Aligned_cols=346 Identities=17% Similarity=0.135 Sum_probs=176.8
Q ss_pred HHHhhccccceeeeeecCCCcc-cccccchhhhhcccccceeccccCccccchhHHHhhhhccccccCCCCccccccccC
Q 011445 19 IMLTSCLQLESLSLKIRGFGVE-VDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSS 97 (485)
Q Consensus 19 ~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (485)
..+.++++|+.|.+..+..... .....+..-+..+|.+++.+.+.+.+...++.. ...
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~---------------------f~~ 610 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN---------------------FRP 610 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc---------------------CCc
Confidence 3578899999999974321100 000011122334677788888877654444332 124
Q ss_pred CCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCcc
Q 011445 98 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 177 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 177 (485)
.+|++|+++.+.+... ...+ ..+++|+.|+++++. .+... ..+..+++|+.|++++|.. ...+
T Consensus 611 ~~L~~L~L~~s~l~~L-~~~~-~~l~~Lk~L~Ls~~~--------~l~~i--p~ls~l~~Le~L~L~~c~~-----L~~l 673 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKL-WDGV-HSLTGLRNIDLRGSK--------NLKEI--PDLSMATNLETLKLSDCSS-----LVEL 673 (1153)
T ss_pred cCCcEEECcCcccccc-cccc-ccCCCCCEEECCCCC--------CcCcC--CccccCCcccEEEecCCCC-----cccc
Confidence 6777777776554321 1112 346777777777652 22211 1355667777777776642 1111
Q ss_pred CcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCH
Q 011445 178 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 257 (485)
Q Consensus 178 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 257 (485)
+ .....+++|+.|++++|..+.... . ...+++|+.|++++|..+.. +....++|+.|+++++. +..
T Consensus 674 p-----~si~~L~~L~~L~L~~c~~L~~Lp--~-~i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~~ 739 (1153)
T PLN03210 674 P-----SSIQYLNKLEDLDMSRCENLEILP--T-GINLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IEE 739 (1153)
T ss_pred c-----hhhhccCCCCEEeCCCCCCcCccC--C-cCCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCc-ccc
Confidence 1 112355677777777765543211 1 11456777777777643221 11123567777776643 221
Q ss_pred HHHHHhhCCCCCCEEEccCCCCCcH-HHhh-----cccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCC
Q 011445 258 ETVKKLASSRNLEVLDLGGCKSIAD-TCLR-----SISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT 331 (485)
Q Consensus 258 ~~~~~l~~l~~L~~L~l~~~~~~~~-~~l~-----~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 331 (485)
+.....+++|+.|.+.++....- .... ....+++|+.|++++|.........+. .+++|+.|++++|..+.
T Consensus 740 --lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 740 --FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLE 816 (1153)
T ss_pred --ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcC
Confidence 11112456666666654321000 0000 011346777777777632222112222 46777777777776443
Q ss_pred hhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEe
Q 011445 332 DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLD 411 (485)
Q Consensus 332 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~ 411 (485)
. ++ ....+++|+.|++++|..+.. +....++|+.|+++++. ++... ..+. .+++|+.|+
T Consensus 817 ~-----LP--~~~~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~-i~~iP-~si~-------~l~~L~~L~ 875 (1153)
T PLN03210 817 T-----LP--TGINLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTG-IEEVP-WWIE-------KFSNLSFLD 875 (1153)
T ss_pred e-----eC--CCCCccccCEEECCCCCcccc-----ccccccccCEeECCCCC-CccCh-HHHh-------cCCCCCEEE
Confidence 2 11 001356777777777755432 11223567777777664 43211 1122 477777777
Q ss_pred ccCCCCCCHHHHHhhcCCCCCCceEEeeccee
Q 011445 412 LCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 443 (485)
Q Consensus 412 l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~ 443 (485)
+++|++++..... ...+++|+.+++++|.
T Consensus 876 L~~C~~L~~l~~~---~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 876 MNGCNNLQRVSLN---ISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCcCccCcc---cccccCCCeeecCCCc
Confidence 7777776653221 1245566666666665
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.37 E-value=6.7e-15 Score=139.36 Aligned_cols=297 Identities=17% Similarity=0.141 Sum_probs=124.7
Q ss_pred ccCCCccEEEecccCCChHHHH-HHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCc
Q 011445 95 YSSFNLRSLSLVLDVITDELLI-TITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 173 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 173 (485)
..++.||.+.+..|.+....++ .+.+ +..|+.|+|+.| .++.. +..+...+++-.|+++++.
T Consensus 75 s~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShN---------qL~Ev-P~~LE~AKn~iVLNLS~N~------ 137 (1255)
T KOG0444|consen 75 SDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHN---------QLREV-PTNLEYAKNSIVLNLSYNN------ 137 (1255)
T ss_pred ccchhhHHHhhhccccccCCCCchhcc-cccceeeecchh---------hhhhc-chhhhhhcCcEEEEcccCc------
Confidence 4455555555554443332222 2322 555555555553 22221 2234445555566665532
Q ss_pred cCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCC
Q 011445 174 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 253 (485)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 253 (485)
...++.. +..++..|-.|+++++ .+ +.++.-..++..|++|.+++++ +....+.++ ..+..|+.|++++..
T Consensus 138 IetIPn~----lfinLtDLLfLDLS~N-rL--e~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQL-PsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 138 IETIPNS----LFINLTDLLFLDLSNN-RL--EMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQL-PSMTSLSVLHMSNTQ 208 (1255)
T ss_pred cccCCch----HHHhhHhHhhhccccc-hh--hhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcC-ccchhhhhhhccccc
Confidence 1122221 2223344445555542 11 1122223444566666666654 222222221 123344444444432
Q ss_pred CCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChh
Q 011445 254 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 333 (485)
Q Consensus 254 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 333 (485)
..-+.....+-.+.+|..++++. +.++.. ...+-++++|+.|++++|.++...+..- ...+|+.|+++.+. ++.-
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~-N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~~~~--~W~~lEtLNlSrNQ-Lt~L 283 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSE-NNLPIV-PECLYKLRNLRRLNLSGNKITELNMTEG--EWENLETLNLSRNQ-LTVL 283 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccc-cCCCcc-hHHHhhhhhhheeccCcCceeeeeccHH--HHhhhhhhccccch-hccc
Confidence 21111112223345555555554 233221 1222345666666666665554332211 12455666666554 2210
Q ss_pred hHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEecc
Q 011445 334 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 413 (485)
Q Consensus 334 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~ 413 (485)
...++ .++.|+.|.+..+ +++-+++..-...+.+|+.+...+|. +.-. .+.+. .|+.|++|.+.
T Consensus 284 -P~avc-----KL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~-LElV-PEglc-------RC~kL~kL~L~ 347 (1255)
T KOG0444|consen 284 -PDAVC-----KLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNK-LELV-PEGLC-------RCVKLQKLKLD 347 (1255)
T ss_pred -hHHHh-----hhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccc-cccC-chhhh-------hhHHHHHhccc
Confidence 11112 3445555555442 44443333322334445555554443 1111 11122 36666666666
Q ss_pred CCCCCCH-HHHHhhcCCCCCCceEEeeccee
Q 011445 414 NCIGLSV-DSLRWVKRPSFRGLHWLGIGQTR 443 (485)
Q Consensus 414 ~c~~l~~-~~~~~l~~~~~~~L~~L~l~~~~ 443 (485)
...-+|- +++. .+|.|+.|++..|+
T Consensus 348 ~NrLiTLPeaIH-----lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 348 HNRLITLPEAIH-----LLPDLKVLDLRENP 373 (1255)
T ss_pred ccceeechhhhh-----hcCCcceeeccCCc
Confidence 5444443 2222 23566666666655
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.26 E-value=1.6e-13 Score=130.24 Aligned_cols=268 Identities=18% Similarity=0.171 Sum_probs=162.4
Q ss_pred ccceeccccCccccchhHHHhh----hhccccccCCCCccccccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEec
Q 011445 55 STIKSLKLQPVLERDAFFLIRR----IGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDL 130 (485)
Q Consensus 55 ~~l~~l~l~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L 130 (485)
.+++.++|++....+.+.-... ..++++.+-...+....|.++..|-+|+|++|.+... ++.+ +++.+|++|.|
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L-PPQ~-RRL~~LqtL~L 180 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML-PPQI-RRLSMLQTLKL 180 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhc-CHHH-HHHhhhhhhhc
Confidence 3577788888777777665433 4445555555556566777888888899998876432 3344 55889999999
Q ss_pred CCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHH
Q 011445 131 EDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAA 210 (485)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 210 (485)
++| .+....+..+..+.+|+.|.+++.. ....+++. ++ ..+.+|..++++.+ .++. ++.
T Consensus 181 s~N---------PL~hfQLrQLPsmtsL~vLhms~Tq----RTl~N~Pt-sl----d~l~NL~dvDlS~N-~Lp~--vPe 239 (1255)
T KOG0444|consen 181 SNN---------PLNHFQLRQLPSMTSLSVLHMSNTQ----RTLDNIPT-SL----DDLHNLRDVDLSEN-NLPI--VPE 239 (1255)
T ss_pred CCC---------hhhHHHHhcCccchhhhhhhccccc----chhhcCCC-ch----hhhhhhhhcccccc-CCCc--chH
Confidence 984 4455556666777788888887643 11112211 11 23457888888864 3331 233
Q ss_pred HHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhh-ccc
Q 011445 211 ILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLR-SIS 289 (485)
Q Consensus 211 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~l~ 289 (485)
.+..+++|+.|+++++. ++.... -...+.+|+.|+++.+. ++. -..++.+++.|+.|.+.+ +.++-+++. .++
T Consensus 240 cly~l~~LrrLNLS~N~-iteL~~--~~~~W~~lEtLNlSrNQ-Lt~-LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIG 313 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNK-ITELNM--TEGEWENLETLNLSRNQ-LTV-LPDAVCKLTKLTKLYANN-NKLTFEGIPSGIG 313 (1255)
T ss_pred HHhhhhhhheeccCcCc-eeeeec--cHHHHhhhhhhccccch-hcc-chHHHhhhHHHHHHHhcc-CcccccCCccchh
Confidence 35566899999999884 332221 12234678888888754 322 223566778888887766 455555443 356
Q ss_pred CCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCC
Q 011445 290 CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGI 360 (485)
Q Consensus 290 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~ 360 (485)
++.+|+.+..++|.+.- ....+.+ |+.|+.|.+..+.-++-..-.+ -++.|+.|++..++++
T Consensus 314 KL~~Levf~aanN~LEl-VPEglcR-C~kL~kL~L~~NrLiTLPeaIH-------lL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLEL-VPEGLCR-CVKLQKLKLDHNRLITLPEAIH-------LLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhhHHHHhhcccccc-Cchhhhh-hHHHHHhcccccceeechhhhh-------hcCCcceeeccCCcCc
Confidence 77777777777763321 1122333 7778888877666444322222 3467777777766554
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=9.7e-12 Score=113.40 Aligned_cols=211 Identities=20% Similarity=0.120 Sum_probs=127.9
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccCh-hH-hhhcCCCCCcceEEeCCccccCCC
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTS-SG-LQSLGSCHHLTGLSLTRCRHNHQG 172 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~-~~-~~~l~~~~~L~~L~l~~~~~~~~~ 172 (485)
.++.+|+.+.|.+..+.........+.||+++.|+|+.+ -+.. .. ......+|+|+.|+++.+.-
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N---------L~~nw~~v~~i~eqLp~Le~LNls~Nrl---- 184 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN---------LFHNWFPVLKIAEQLPSLENLNLSSNRL---- 184 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh---------hHHhHHHHHHHHHhcccchhcccccccc----
Confidence 346778888887666655554455667888888888874 1211 11 12235788888888876531
Q ss_pred ccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccC
Q 011445 173 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC 252 (485)
Q Consensus 173 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 252 (485)
....+.... ..+++|+.|.++.| +++...+..++..+|+|+.|.+.++..+...... ...+..|++|+++++
T Consensus 185 --~~~~~s~~~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 185 --SNFISSNTT---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNN 256 (505)
T ss_pred --cCCccccch---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCC
Confidence 111111111 14577888888887 5667777777888888888888877422211111 123456788888887
Q ss_pred CCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhh------cccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccC
Q 011445 253 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLR------SISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRG 326 (485)
Q Consensus 253 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~------~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 326 (485)
..+....+.....++.|..|+++.+ .+++.... ....+++|++|++..|++.+.....-...+++|+.|.+..
T Consensus 257 ~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 257 NLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 7666665666677888888888775 33332221 1235788888888888775543222222356677776544
Q ss_pred C
Q 011445 327 C 327 (485)
Q Consensus 327 ~ 327 (485)
.
T Consensus 336 n 336 (505)
T KOG3207|consen 336 N 336 (505)
T ss_pred c
Confidence 3
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.15 E-value=6.9e-12 Score=124.45 Aligned_cols=126 Identities=22% Similarity=0.160 Sum_probs=66.4
Q ss_pred CCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCC--CCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 011445 294 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK--RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA 371 (485)
Q Consensus 294 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~--~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 371 (485)
|+.|.+.+|.++|..+..+.. .++|+.|+++++. .+.+..+. .+..|+.|+++++ +++... ..+ ..
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~--------kle~LeeL~LSGN-kL~~Lp-~tv-a~ 428 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLR--------KLEELEELNLSGN-KLTTLP-DTV-AN 428 (1081)
T ss_pred HHHHHHhcCcccccchhhhcc-ccceeeeeecccccccCCHHHHh--------chHHhHHHhcccc-hhhhhh-HHH-Hh
Confidence 444444444455444444332 4455555555442 11111111 2334555555553 333322 111 13
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceec
Q 011445 372 GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRL 444 (485)
Q Consensus 372 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~ 444 (485)
|+.|+.|...+|. +.. +..++ .++.|+.+|++. ++++...+.... .-|+|++|++++|.-
T Consensus 429 ~~~L~tL~ahsN~-l~~--fPe~~-------~l~qL~~lDlS~-N~L~~~~l~~~~--p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQ-LLS--FPELA-------QLPQLKVLDLSC-NNLSEVTLPEAL--PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhHHHhhcCCc-eee--chhhh-------hcCcceEEeccc-chhhhhhhhhhC--CCcccceeeccCCcc
Confidence 4555555554443 111 12333 388999999986 799887776654 237999999999984
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.12 E-value=3.1e-11 Score=119.94 Aligned_cols=203 Identities=17% Similarity=0.175 Sum_probs=115.6
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCC-------HHHHHHH-------------HcCCCCccEEEc
Q 011445 190 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLS-------DLAFHDL-------------TGVPCALVEVRL 249 (485)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~-------------~~~~~~L~~L~l 249 (485)
.+|+.++++.. +.. .++.....|++|+.++...+.... ...+..+ ....+.|+.|++
T Consensus 241 ~nl~~~dis~n-~l~--~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLS--NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchh-hhh--cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 46888888764 222 233556778899998888774210 0011110 011356777777
Q ss_pred ccCCC--CCHHHH-------HHhh---------------CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCC
Q 011445 250 LWCRL--ITSETV-------KKLA---------------SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 305 (485)
Q Consensus 250 ~~~~~--l~~~~~-------~~l~---------------~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~ 305 (485)
..+.. +.+..+ ..+. ..+.|+.|.+.+ +.++|..+..+..+++|+.|++++|.+.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhccccceeeeeecccccc
Confidence 65431 111111 1110 123455566666 5677777777778888888888888443
Q ss_pred hHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCC
Q 011445 306 DSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFY 385 (485)
Q Consensus 306 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 385 (485)
...-..+ +.++.|++|+++++. ++... ..++ .++.|++|....+ .+.... .+. .++.|+.+|++.| .
T Consensus 397 ~fpas~~-~kle~LeeL~LSGNk-L~~Lp-~tva-----~~~~L~tL~ahsN-~l~~fP--e~~-~l~qL~~lDlS~N-~ 463 (1081)
T KOG0618|consen 397 SFPASKL-RKLEELEELNLSGNK-LTTLP-DTVA-----NLGRLHTLRAHSN-QLLSFP--ELA-QLPQLKVLDLSCN-N 463 (1081)
T ss_pred cCCHHHH-hchHHhHHHhcccch-hhhhh-HHHH-----hhhhhHHHhhcCC-ceeech--hhh-hcCcceEEecccc-h
Confidence 2222222 236678888888876 44333 2222 4677888877653 443322 232 4588888888665 4
Q ss_pred CCHHHHHHHHhhCCCCcCCCCCcEEeccCCC
Q 011445 386 VTDASVEALARKQPDQEKSKQLRRLDLCNCI 416 (485)
Q Consensus 386 l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 416 (485)
++...+..... -|+|++|+++|..
T Consensus 464 L~~~~l~~~~p-------~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 464 LSEVTLPEALP-------SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhCC-------CcccceeeccCCc
Confidence 66655544333 4788888888865
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1e-10 Score=106.92 Aligned_cols=247 Identities=15% Similarity=0.081 Sum_probs=142.3
Q ss_pred CcHhHHHHh---hcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCC
Q 011445 178 NDMGMFLLS---EGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 254 (485)
Q Consensus 178 ~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 254 (485)
...+++.+. ..+.+|+++.+.++ .+...+.....+.||+++.|+++++-.-....+..++..+|+|+.|+++.+..
T Consensus 106 E~iGfDki~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 106 EFIGFDKIAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred EEecHHHHHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence 333444443 34667888888876 34444443567889999999999986555667778888899999999987653
Q ss_pred CCHHHHHHhhCCCCCCEEEccCCCCCcHHHh-hcccCCCCCCEEEcCCC-CCChHHHHHHHhcCCCccEEEccCCCCCCh
Q 011445 255 ITSETVKKLASSRNLEVLDLGGCKSIADTCL-RSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTD 332 (485)
Q Consensus 255 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l-~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 332 (485)
....+-..-..++.|+.|.+++|. ++.... ..+..+|+|+.|.+..| .+....... ..+..|+.|+|+++..+.-
T Consensus 185 ~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 185 SNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDF 261 (505)
T ss_pred cCCccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccc
Confidence 221111111145778888888874 444333 33457888888888877 332221111 1135688888888775543
Q ss_pred hhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHH-----HHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCC
Q 011445 333 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGIL-----TIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQL 407 (485)
Q Consensus 333 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L 407 (485)
....... .+|.|..|+++.| ++++.... .....+++|+.|++..|+-..-..+..+.. +++|
T Consensus 262 ~~~~~~~-----~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~-------l~nl 328 (505)
T KOG3207|consen 262 DQGYKVG-----TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT-------LENL 328 (505)
T ss_pred ccccccc-----cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhc-------cchh
Confidence 3333333 6778888888776 44432221 123346788888887776222223333333 6667
Q ss_pred cEEeccCCCCCCH--HHHHhhcCCCCCCceEEeecce
Q 011445 408 RRLDLCNCIGLSV--DSLRWVKRPSFRGLHWLGIGQT 442 (485)
Q Consensus 408 ~~L~l~~c~~l~~--~~~~~l~~~~~~~L~~L~l~~~ 442 (485)
+.|.+.. +.++. .....+..+.+++|..|+=..+
T Consensus 329 k~l~~~~-n~ln~e~~~a~~~VIAr~~~l~~LN~~di 364 (505)
T KOG3207|consen 329 KHLRITL-NYLNKETDTAKLLVIARISQLVKLNDVDI 364 (505)
T ss_pred hhhhccc-ccccccccceeEEeeeehhhhhhhccccc
Confidence 7776554 33332 1111221234555555544333
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.93 E-value=1.7e-09 Score=110.24 Aligned_cols=257 Identities=15% Similarity=0.079 Sum_probs=126.2
Q ss_pred CccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccC
Q 011445 99 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN 178 (485)
Q Consensus 99 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 178 (485)
+-..|+++.+.++. .+..+ .++|+.|++.+| .++... ...++|++|+++++. +..++
T Consensus 202 ~~~~LdLs~~~Lts-LP~~l---~~~L~~L~L~~N---------~Lt~LP----~lp~~Lk~LdLs~N~------LtsLP 258 (788)
T PRK15387 202 GNAVLNVGESGLTT-LPDCL---PAHITTLVIPDN---------NLTSLP----ALPPELRTLEVSGNQ------LTSLP 258 (788)
T ss_pred CCcEEEcCCCCCCc-CCcch---hcCCCEEEccCC---------cCCCCC----CCCCCCcEEEecCCc------cCccc
Confidence 45566776655542 12222 246777777764 222211 124677777776643 11111
Q ss_pred cHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHH
Q 011445 179 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE 258 (485)
Q Consensus 179 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 258 (485)
...++|+.|+++++ .+. .+.. ..++|+.|+++++. +.. + ....++|+.|+++++. +...
T Consensus 259 --------~lp~sL~~L~Ls~N-~L~--~Lp~---lp~~L~~L~Ls~N~-Lt~--L---P~~p~~L~~LdLS~N~-L~~L 317 (788)
T PRK15387 259 --------VLPPGLLELSIFSN-PLT--HLPA---LPSGLCKLWIFGNQ-LTS--L---PVLPPGLQELSVSDNQ-LASL 317 (788)
T ss_pred --------CcccccceeeccCC-chh--hhhh---chhhcCEEECcCCc-ccc--c---cccccccceeECCCCc-cccC
Confidence 12356777777664 222 1211 22567777777763 221 1 1123567777777653 3221
Q ss_pred HHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhH
Q 011445 259 TVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHL 338 (485)
Q Consensus 259 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 338 (485)
.. ...+|+.|+++++ .++. +..+ .++|+.|++++|++.... . ..++|+.|+++++. +. .+
T Consensus 318 --p~--lp~~L~~L~Ls~N-~L~~--LP~l--p~~Lq~LdLS~N~Ls~LP--~---lp~~L~~L~Ls~N~-L~-----~L 377 (788)
T PRK15387 318 --PA--LPSELCKLWAYNN-QLTS--LPTL--PSGLQELSVSDNQLASLP--T---LPSELYKLWAYNNR-LT-----SL 377 (788)
T ss_pred --CC--CcccccccccccC-cccc--cccc--ccccceEecCCCccCCCC--C---CCcccceehhhccc-cc-----cC
Confidence 11 1135666666653 3321 1111 136777777777655311 1 12456666666554 32 12
Q ss_pred hhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCC
Q 011445 339 LCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGL 418 (485)
Q Consensus 339 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 418 (485)
. ....+|+.|+++++ .++... ...++|+.|++++|. ++. ++. ...+|+.|++++ +++
T Consensus 378 P----~l~~~L~~LdLs~N-~Lt~LP-----~l~s~L~~LdLS~N~-Lss-----IP~------l~~~L~~L~Ls~-NqL 434 (788)
T PRK15387 378 P----ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGNR-LTS-----LPM------LPSGLLSLSVYR-NQL 434 (788)
T ss_pred c----ccccccceEEecCC-cccCCC-----CcccCCCEEEccCCc-CCC-----CCc------chhhhhhhhhcc-Ccc
Confidence 2 12346777777764 443211 112467777777764 331 111 133566677766 355
Q ss_pred CHHHHHhhcCCCCCCceEEeecceecc
Q 011445 419 SVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 419 ~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
+... ..+. .+++|+.|++++|++.
T Consensus 435 t~LP-~sl~--~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 435 TRLP-ESLI--HLSSETTVNLEGNPLS 458 (788)
T ss_pred cccC-hHHh--hccCCCeEECCCCCCC
Confidence 5321 1121 4567777777777765
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=3.6e-09 Score=107.92 Aligned_cols=243 Identities=20% Similarity=0.178 Sum_probs=141.4
Q ss_pred CCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCcc
Q 011445 98 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 177 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 177 (485)
++|+.|++..|.++.. + ...++|++|++++| .++... ...++|+.|+++++. +
T Consensus 222 ~~L~~L~L~~N~Lt~L--P---~lp~~Lk~LdLs~N---------~LtsLP----~lp~sL~~L~Ls~N~---------L 274 (788)
T PRK15387 222 AHITTLVIPDNNLTSL--P---ALPPELRTLEVSGN---------QLTSLP----VLPPGLLELSIFSNP---------L 274 (788)
T ss_pred cCCCEEEccCCcCCCC--C---CCCCCCcEEEecCC---------ccCccc----CcccccceeeccCCc---------h
Confidence 4788888887776542 1 23578888888885 333211 124678888886643 2
Q ss_pred CcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCH
Q 011445 178 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 257 (485)
Q Consensus 178 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 257 (485)
+ .+.....+|+.|+++++ +++. + ....++|+.|+++++. +.. +. .....|+.|++.+|. ++.
T Consensus 275 ~-----~Lp~lp~~L~~L~Ls~N-~Lt~--L---P~~p~~L~~LdLS~N~-L~~--Lp---~lp~~L~~L~Ls~N~-L~~ 336 (788)
T PRK15387 275 T-----HLPALPSGLCKLWIFGN-QLTS--L---PVLPPGLQELSVSDNQ-LAS--LP---ALPSELCKLWAYNNQ-LTS 336 (788)
T ss_pred h-----hhhhchhhcCEEECcCC-cccc--c---cccccccceeECCCCc-ccc--CC---CCcccccccccccCc-ccc
Confidence 1 22222356788888775 3332 1 1123678888888874 321 11 123467777777654 322
Q ss_pred HHHHHhhCC-CCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHH
Q 011445 258 ETVKKLASS-RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 336 (485)
Q Consensus 258 ~~~~~l~~l-~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 336 (485)
+..+ .+|+.|+++++ .+.. +.. ..++|+.|++++|.+.. +.. ...+|+.|+++++. +.
T Consensus 337 -----LP~lp~~Lq~LdLS~N-~Ls~--LP~--lp~~L~~L~Ls~N~L~~--LP~---l~~~L~~LdLs~N~-Lt----- 395 (788)
T PRK15387 337 -----LPTLPSGLQELSVSDN-QLAS--LPT--LPSELYKLWAYNNRLTS--LPA---LPSGLKELIVSGNR-LT----- 395 (788)
T ss_pred -----ccccccccceEecCCC-ccCC--CCC--CCcccceehhhcccccc--Ccc---cccccceEEecCCc-cc-----
Confidence 2222 47888888873 4442 221 23578888888876653 222 23578888888775 43
Q ss_pred hHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCC
Q 011445 337 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 416 (485)
Q Consensus 337 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 416 (485)
.+. ...++|+.|+++++ .++.. .. ...+|+.|++++|. ++... ..+. .+++|+.|++++ +
T Consensus 396 ~LP----~l~s~L~~LdLS~N-~LssI--P~---l~~~L~~L~Ls~Nq-Lt~LP-~sl~-------~L~~L~~LdLs~-N 455 (788)
T PRK15387 396 SLP----VLPSELKELMVSGN-RLTSL--PM---LPSGLLSLSVYRNQ-LTRLP-ESLI-------HLSSETTVNLEG-N 455 (788)
T ss_pred CCC----CcccCCCEEEccCC-cCCCC--Cc---chhhhhhhhhccCc-ccccC-hHHh-------hccCCCeEECCC-C
Confidence 222 23467888888886 55432 11 12457888888775 54221 1223 478888999988 4
Q ss_pred CCCHHHHHhh
Q 011445 417 GLSVDSLRWV 426 (485)
Q Consensus 417 ~l~~~~~~~l 426 (485)
.++......+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 7776555544
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.83 E-value=3.1e-10 Score=102.39 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=72.0
Q ss_pred cccchhhhhcccccceeccccCccccchhHHHhhhhccccccCCCCccccccccCCCccEEEecccCCChHHHHHHHhcC
Q 011445 43 ACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASL 122 (485)
Q Consensus 43 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 122 (485)
..++..+...+|.+...+.|.-..+ ..+...+|+++++||.|+|+.|.++......+. ++
T Consensus 55 ~~GL~eVP~~LP~~tveirLdqN~I-------------------~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~-GL 114 (498)
T KOG4237|consen 55 GKGLTEVPANLPPETVEIRLDQNQI-------------------SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK-GL 114 (498)
T ss_pred CCCcccCcccCCCcceEEEeccCCc-------------------ccCChhhccchhhhceecccccchhhcChHhhh-hh
Confidence 4455666677888888777765543 334446789999999999999999888777774 58
Q ss_pred CCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCc
Q 011445 123 PFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC 166 (485)
Q Consensus 123 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 166 (485)
+++.+|-+.++ +.|++..-..++++..|+.|.+.-+
T Consensus 115 ~~l~~Lvlyg~--------NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 115 ASLLSLVLYGN--------NKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred HhhhHHHhhcC--------CchhhhhhhHhhhHHHHHHHhcChh
Confidence 89998888776 6677776667778888888877543
No 26
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.72 E-value=3.5e-08 Score=100.31 Aligned_cols=215 Identities=19% Similarity=0.195 Sum_probs=145.5
Q ss_pred CCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccc--cChhH-hhh-c--CCCCCcceEEeCCccccC
Q 011445 97 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLD--LTSSG-LQS-L--GSCHHLTGLSLTRCRHNH 170 (485)
Q Consensus 97 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~~-~~~-l--~~~~~L~~L~l~~~~~~~ 170 (485)
.-++...++............+.+ ..|++|.+.+........... +.... +.. + ..-.+|++|+++|..
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~--- 133 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSE--- 133 (699)
T ss_pred hheeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccc---
Confidence 347788888776666666665644 339999888764332111110 00000 111 1 256789999997743
Q ss_pred CCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcc
Q 011445 171 QGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLL 250 (485)
Q Consensus 171 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 250 (485)
.+.......+...+|.|++|.+.+- .+....+..++.++|+|..||++++. +++. .-..+.++|+.|.+.
T Consensus 134 -----~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 134 -----LFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMR 203 (699)
T ss_pred -----hhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccHHHHhcc
Confidence 3566667778888999999999984 45555677888999999999999985 3332 223467888888888
Q ss_pred cCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHH-----HhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEcc
Q 011445 251 WCRLITSETVKKLASSRNLEVLDLGGCKSIADT-----CLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLR 325 (485)
Q Consensus 251 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 325 (485)
+-...+...+..+..+++|+.||++........ .++.-..+|+|+.|+.+++.+....+..+...-|+|+.+.+.
T Consensus 204 nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 204 NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred CCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 765445566778889999999999875433332 122223589999999999988888888887766777766654
Q ss_pred C
Q 011445 326 G 326 (485)
Q Consensus 326 ~ 326 (485)
+
T Consensus 284 ~ 284 (699)
T KOG3665|consen 284 D 284 (699)
T ss_pred h
Confidence 3
No 27
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.67 E-value=1.3e-07 Score=96.12 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=84.5
Q ss_pred CCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccC--ccCcH-hHHHHh--hcCCCccEEE
Q 011445 122 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK--RVNDM-GMFLLS--EGCKGLESVR 196 (485)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~~-~l~~l~--~~~~~L~~L~ 196 (485)
--++++.++.+ ..+.......+.... |+.|.+++.......... .++.. -+..+. ..-.+|++|+
T Consensus 59 ~f~ltki~l~~---------~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~Ld 128 (699)
T KOG3665|consen 59 KFNLTKIDLKN---------VTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLD 128 (699)
T ss_pred hheeEEeeccc---------eecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcC
Confidence 34566666666 455555555555444 777777654311100000 00000 011111 1123566666
Q ss_pred eCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccC
Q 011445 197 LGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG 276 (485)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 276 (485)
++|...........+..-+|+|++|.+++-. +....+..+..++|+|..|+|+++. +++. ..++++++|+.|.+.+
T Consensus 129 I~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl--~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 129 ISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTN-ISNL--SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCC-ccCc--HHHhccccHHHHhccC
Confidence 6665444444444555556666666666653 3334466666666666666666643 3322 3455566666666655
Q ss_pred CCCCcHHHhhcccCCCCCCEEEcCCC
Q 011445 277 CKSIADTCLRSISCLRKLTALNLTGA 302 (485)
Q Consensus 277 ~~~~~~~~l~~l~~~~~L~~L~l~~~ 302 (485)
..-.+...+..+..+++|+.||++..
T Consensus 205 Le~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 205 LEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred CCCCchhhHHHHhcccCCCeeecccc
Confidence 43333344445555666666666654
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=5.8e-07 Score=77.70 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=18.3
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEec
Q 011445 189 CKGLESVRLGGFSKVSDAGFAAILLSC---HSLKKFEVR 224 (485)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~ 224 (485)
...+++++++++ .+..+....++... .+|+..+++
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfs 66 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFS 66 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehh
Confidence 556777777774 44555554444433 344444443
No 29
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.60 E-value=3.9e-09 Score=95.68 Aligned_cols=106 Identities=21% Similarity=0.142 Sum_probs=55.8
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCcc
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 174 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 174 (485)
+.+.+|.-|+|..|++.. ++.+. +|..|++|++.. +.+.....+..+.+++|..||++.+. .
T Consensus 203 g~l~~L~~LyL~~Nki~~--lPef~-gcs~L~Elh~g~---------N~i~~lpae~~~~L~~l~vLDLRdNk------l 264 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRF--LPEFP-GCSLLKELHVGE---------NQIEMLPAEHLKHLNSLLVLDLRDNK------L 264 (565)
T ss_pred cchhhhHHHHhhhccccc--CCCCC-ccHHHHHHHhcc---------cHHHhhHHHHhcccccceeeeccccc------c
Confidence 445555556665555432 22332 355666666655 34444444445577777777776642 3
Q ss_pred CccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 011445 175 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS 227 (485)
Q Consensus 175 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 227 (485)
+.++++.. -+++|+.|+++++ .++ ++..-++++ .|+.|.+.|++
T Consensus 265 ke~Pde~c-----lLrsL~rLDlSNN-~is--~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 265 KEVPDEIC-----LLRSLERLDLSNN-DIS--SLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccCchHHH-----HhhhhhhhcccCC-ccc--cCCcccccc-eeeehhhcCCc
Confidence 33444321 2356777777764 222 222224444 66777777764
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=3.7e-08 Score=85.97 Aligned_cols=108 Identities=22% Similarity=0.189 Sum_probs=63.3
Q ss_pred ccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHh-hCCCCCC
Q 011445 192 LESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKL-ASSRNLE 270 (485)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~ 270 (485)
++-|-+.+|.--+...+..+...+..++.+++.++..-....+.++..++|.|+.|+++.++.-++. ..+ .+..+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccceE
Confidence 3344455553323334455666778888888888764445566777778888888888765532221 122 2456777
Q ss_pred EEEccCCCCCcHHHhhc-ccCCCCCCEEEcCCC
Q 011445 271 VLDLGGCKSIADTCLRS-ISCLRKLTALNLTGA 302 (485)
Q Consensus 271 ~L~l~~~~~~~~~~l~~-l~~~~~L~~L~l~~~ 302 (485)
.|.+.+ ..++...... +..+|.+++|.++.|
T Consensus 125 ~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 125 VLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence 777766 3444333332 235666677766665
No 31
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.48 E-value=2.4e-08 Score=90.69 Aligned_cols=63 Identities=22% Similarity=0.181 Sum_probs=35.5
Q ss_pred cccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCcc
Q 011445 94 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCR 167 (485)
Q Consensus 94 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (485)
|..|+.|.+|+++.|.+.. ......+.++++..||+.+++ ++.. +..+.-+++|..||++++.
T Consensus 224 f~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNk---------lke~-Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNK---------LKEV-PDEICLLRSLERLDLSNND 286 (565)
T ss_pred CCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccc---------cccC-chHHHHhhhhhhhcccCCc
Confidence 3556677777777666533 233445567777777777742 2221 1223345666677776643
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.47 E-value=1.4e-08 Score=91.92 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=53.7
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHH
Q 011445 344 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 423 (485)
Q Consensus 344 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 423 (485)
+.+++|++|+++++ .++...-..+ +....+++|.+..|. +....-..+. ++..|+.|++++ ++++....
T Consensus 271 ~~L~~L~~lnlsnN-~i~~i~~~aF-e~~a~l~eL~L~~N~-l~~v~~~~f~-------~ls~L~tL~L~~-N~it~~~~ 339 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNN-KITRIEDGAF-EGAAELQELYLTRNK-LEFVSSGMFQ-------GLSGLKTLSLYD-NQITTVAP 339 (498)
T ss_pred hhcccceEeccCCC-ccchhhhhhh-cchhhhhhhhcCcch-HHHHHHHhhh-------ccccceeeeecC-CeeEEEec
Confidence 35678888888774 5654322222 234567777777664 4433322222 477788888887 57776554
Q ss_pred HhhcCCCCCCceEEeecceecc
Q 011445 424 RWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 424 ~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
..+. ...+|..|++-.|++.
T Consensus 340 ~aF~--~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 340 GAFQ--TLFSLSTLNLLSNPFN 359 (498)
T ss_pred cccc--ccceeeeeehccCccc
Confidence 4443 4557778887777754
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=2.2e-07 Score=81.41 Aligned_cols=232 Identities=19% Similarity=0.170 Sum_probs=128.8
Q ss_pred HHHHhhcCCCccEEEeCCCCC------CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCC
Q 011445 182 MFLLSEGCKGLESVRLGGFSK------VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI 255 (485)
Q Consensus 182 l~~l~~~~~~L~~L~l~~~~~------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 255 (485)
+..+...|.+|..|.+++... +...-+..=+..+.+|+.+.++.|. ...+..+...-|.|+.+.+.... +
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s~-~ 249 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNTT-I 249 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeeccc-c
Confidence 344455567777777765421 1111111112334677777777764 23333444445667777665422 1
Q ss_pred CHHHHHHhhCCCCCCEEEccCCCC--CcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChh
Q 011445 256 TSETVKKLASSRNLEVLDLGGCKS--IADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 333 (485)
Q Consensus 256 ~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 333 (485)
.+ ...+.....+. +.++... .+......+.....|+++++++|.|+...-. ..-.|.++.|+++.+. +..
T Consensus 250 ~~--~~~l~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDES--vKL~Pkir~L~lS~N~-i~~- 321 (490)
T KOG1259|consen 250 QD--VPSLLPETILA--DPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDES--VKLAPKLRRLILSQNR-IRT- 321 (490)
T ss_pred cc--cccccchhhhc--CccCCCCCccCCceEEecchHhhhhhccccccchhhhhhh--hhhccceeEEeccccc-eee-
Confidence 11 11121112222 2222111 1111122223456788999999866533211 1235889999999876 332
Q ss_pred hHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEecc
Q 011445 334 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 413 (485)
Q Consensus 334 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~ 413 (485)
+..++ .+++|+.|+++++ .++. +..+...+-+++.|.+++|. +.+ +..+. .+.+|..||+.
T Consensus 322 -v~nLa-----~L~~L~~LDLS~N-~Ls~--~~Gwh~KLGNIKtL~La~N~-iE~--LSGL~-------KLYSLvnLDl~ 382 (490)
T KOG1259|consen 322 -VQNLA-----ELPQLQLLDLSGN-LLAE--CVGWHLKLGNIKTLKLAQNK-IET--LSGLR-------KLYSLVNLDLS 382 (490)
T ss_pred -ehhhh-----hcccceEeecccc-hhHh--hhhhHhhhcCEeeeehhhhh-Hhh--hhhhH-------hhhhheecccc
Confidence 22233 4679999999985 4432 22333456789999998885 322 12222 26679999999
Q ss_pred CCCCCCH-HHHHhhcCCCCCCceEEeecceeccCC
Q 011445 414 NCIGLSV-DSLRWVKRPSFRGLHWLGIGQTRLASK 447 (485)
Q Consensus 414 ~c~~l~~-~~~~~l~~~~~~~L~~L~l~~~~~~~~ 447 (485)
+ +++.. +.++.+. .+|.|+.+.+.+|++...
T Consensus 383 ~-N~Ie~ldeV~~IG--~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 383 S-NQIEELDEVNHIG--NLPCLETLRLTGNPLAGS 414 (490)
T ss_pred c-cchhhHHHhcccc--cccHHHHHhhcCCCcccc
Confidence 8 46654 5666665 899999999999997754
No 34
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=3e-07 Score=76.01 Aligned_cols=85 Identities=24% Similarity=0.300 Sum_probs=45.1
Q ss_pred ccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhC
Q 011445 319 IMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ 398 (485)
Q Consensus 319 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 398 (485)
++.++-+++. +..+++..+- .++.++.|.+.+|..+.|.+++.+....++|+.|+|++|+.||+.++..+..
T Consensus 103 IeaVDAsds~-I~~eGle~L~-----~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-- 174 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEGLEHLR-----DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-- 174 (221)
T ss_pred EEEEecCCch-HHHHHHHHHh-----ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH--
Confidence 4444544443 4455555544 4555555555555555555555555445555555555555555555555554
Q ss_pred CCCcCCCCCcEEeccCCC
Q 011445 399 PDQEKSKQLRRLDLCNCI 416 (485)
Q Consensus 399 ~~~~~~~~L~~L~l~~c~ 416 (485)
+++|+.|++.+-+
T Consensus 175 -----lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 175 -----LKNLRRLHLYDLP 187 (221)
T ss_pred -----hhhhHHHHhcCch
Confidence 5555555555433
No 35
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=4.6e-07 Score=74.95 Aligned_cols=85 Identities=26% Similarity=0.321 Sum_probs=44.2
Q ss_pred CCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 011445 294 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 373 (485)
Q Consensus 294 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 373 (485)
++.++-+++.|...++..+.. ++.++.|.+.+|..+.+..+..+. +..++|+.|+|++|+.||+.++..+. .++
T Consensus 103 IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT~~GL~~L~-~lk 176 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRITDGGLACLL-KLK 176 (221)
T ss_pred EEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeechhHHHHHH-Hhh
Confidence 344444444555555555443 555555555555555555555554 34455555555555555555555543 335
Q ss_pred CCcEEEecCCC
Q 011445 374 GIIDLCVRSCF 384 (485)
Q Consensus 374 ~L~~L~l~~~~ 384 (485)
+|+.|.+.+-+
T Consensus 177 nLr~L~l~~l~ 187 (221)
T KOG3864|consen 177 NLRRLHLYDLP 187 (221)
T ss_pred hhHHHHhcCch
Confidence 55555554433
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=1.3e-05 Score=69.56 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=53.2
Q ss_pred CCCCEEEccCCCCCcHHHhhcc-----cCCCCCCEEEcCCCCCChHHHHHHHh---cCCCccEEEccCCCCCChhhHHhH
Q 011445 267 RNLEVLDLGGCKSIADTCLRSI-----SCLRKLTALNLTGADITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHL 338 (485)
Q Consensus 267 ~~L~~L~l~~~~~~~~~~l~~l-----~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l 338 (485)
..|+.+.+.. +.+...+...+ ..+.+|+.|++.+|.++-.+-..++. ..+.|++|.+.+|- ++..+...+
T Consensus 185 ~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v 262 (388)
T COG5238 185 ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSV 262 (388)
T ss_pred cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-hccccHHHH
Confidence 3555555544 33443333322 34566666666666555444333322 23456666666665 444443333
Q ss_pred hhhc-CCCCCCccEEecCCCCC----CCHHHHHHH-HhhCCCCcEEEecCCC
Q 011445 339 LCVG-GTISQSLTTLDLGYMPG----ISDDGILTI-AAAGIGIIDLCVRSCF 384 (485)
Q Consensus 339 ~~~~-~~~~~~L~~L~l~~~~~----~~~~~~~~l-~~~~~~L~~L~l~~~~ 384 (485)
.... ....|+|+.|...+... +.+..+..+ ....|-|..|.+.+|.
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 2110 12346666666655321 111111111 1234556666666664
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.30 E-value=3.6e-06 Score=86.78 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=13.8
Q ss_pred CccEEEecccCCChHHHHHHHhcCCCCcEEecCCC
Q 011445 99 NLRSLSLVLDVITDELLITITASLPFLVELDLEDR 133 (485)
Q Consensus 99 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 133 (485)
+|+.|++++|.++.. +..+ +++|++|++++|
T Consensus 200 ~L~~L~Ls~N~LtsL-P~~l---~~nL~~L~Ls~N 230 (754)
T PRK15370 200 QITTLILDNNELKSL-PENL---QGNIKTLYANSN 230 (754)
T ss_pred CCcEEEecCCCCCcC-Chhh---ccCCCEEECCCC
Confidence 455555555544321 1111 235555555553
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=5.8e-07 Score=78.73 Aligned_cols=209 Identities=15% Similarity=0.096 Sum_probs=132.0
Q ss_pred CCCcceEEeCCccccCCCccCccCcH-hHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHH
Q 011445 155 CHHLTGLSLTRCRHNHQGTFKRVNDM-GMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLA 233 (485)
Q Consensus 155 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 233 (485)
...+..|.+.+|. +... .+..+...++.++++++.++.--....+.++++.+|.|+.|+++.+.--++-
T Consensus 44 ~ra~ellvln~~~---------id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I- 113 (418)
T KOG2982|consen 44 LRALELLVLNGSI---------IDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI- 113 (418)
T ss_pred ccchhhheecCCC---------CCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-
Confidence 4455667777764 3333 3456667789999999998644455678888999999999999988532221
Q ss_pred HHHHHcCCCCccEEEcccCCCCCHHHHH-HhhCCCCCCEEEccCCC----CCcHHHhhcccCCCCCCEEEcCCCCC-ChH
Q 011445 234 FHDLTGVPCALVEVRLLWCRLITSETVK-KLASSRNLEVLDLGGCK----SIADTCLRSISCLRKLTALNLTGADI-TDS 307 (485)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~----~~~~~~l~~l~~~~~L~~L~l~~~~l-~~~ 307 (485)
..+.....+|+.|.+.+.. +.-.... .+..+|.+++|.++..+ .+.+...+.. -+.+++|.+..|.. .-.
T Consensus 114 -~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~--s~~v~tlh~~~c~~~~w~ 189 (418)
T KOG2982|consen 114 -KSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW--STEVLTLHQLPCLEQLWL 189 (418)
T ss_pred -ccCcccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc--chhhhhhhcCCcHHHHHH
Confidence 1111235689999998743 4433332 23457778887776521 1222222221 24566666666621 122
Q ss_pred HHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHH-HHHHHHhhCCCCcEEEecCCC
Q 011445 308 GLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDD-GILTIAAAGIGIIDLCVRSCF 384 (485)
Q Consensus 308 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~ 384 (485)
....+.+.+|++..+-+..|+ +.+..-..-+ ..+|.+..|+++.. ++.+. .+..+ ..+++|..|.+++++
T Consensus 190 ~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~s----e~~p~~~~LnL~~~-~idswasvD~L-n~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 190 NKNKLSRIFPNVNSVFVCEGP-LKTESSEKGS----EPFPSLSCLNLGAN-NIDSWASVDAL-NGFPQLVDLRVSENP 260 (418)
T ss_pred HHHhHHhhcccchheeeecCc-ccchhhcccC----CCCCcchhhhhccc-ccccHHHHHHH-cCCchhheeeccCCc
Confidence 344555668999999999887 5444433333 46788888888875 66664 44444 467999999998887
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.22 E-value=1.3e-06 Score=72.90 Aligned_cols=81 Identities=25% Similarity=0.168 Sum_probs=15.8
Q ss_pred CCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 011445 292 RKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA 371 (485)
Q Consensus 292 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 371 (485)
.++++|++.++.++.- ..+...+.+|+.|+++++. +.. +..+. .++.|++|+++++ .++..+ ..+...
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~-I~~--l~~l~-----~L~~L~~L~L~~N-~I~~i~-~~l~~~ 86 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQ-ITK--LEGLP-----GLPRLKTLDLSNN-RISSIS-EGLDKN 86 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S----TT---------TT--EEE--SS----S-C-HHHHHH
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCC-Ccc--ccCcc-----ChhhhhhcccCCC-CCCccc-cchHHh
Confidence 3455666666554432 2222234555666665554 322 11111 3445555555553 443321 112223
Q ss_pred CCCCcEEEecCCC
Q 011445 372 GIGIIDLCVRSCF 384 (485)
Q Consensus 372 ~~~L~~L~l~~~~ 384 (485)
+|+|++|.+++|.
T Consensus 87 lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 87 LPNLQELYLSNNK 99 (175)
T ss_dssp -TT--EEE-TTS-
T ss_pred CCcCCEEECcCCc
Confidence 4555555555543
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.17 E-value=8.1e-06 Score=84.22 Aligned_cols=116 Identities=19% Similarity=0.126 Sum_probs=66.3
Q ss_pred cccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHHHhhhhccccccCCCCccccccccCCCccEEE
Q 011445 25 LQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLS 104 (485)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 104 (485)
.+..+|.+....+.. +...+|..++.+++++.....++.. + +++|++|+
T Consensus 178 ~~~~~L~L~~~~Lts---------LP~~Ip~~L~~L~Ls~N~LtsLP~~---------------l-------~~nL~~L~ 226 (754)
T PRK15370 178 NNKTELRLKILGLTT---------IPACIPEQITTLILDNNELKSLPEN---------------L-------QGNIKTLY 226 (754)
T ss_pred cCceEEEeCCCCcCc---------CCcccccCCcEEEecCCCCCcCChh---------------h-------ccCCCEEE
Confidence 356677777544322 2223566788888887755443321 1 45899999
Q ss_pred ecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcHhHHH
Q 011445 105 LVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFL 184 (485)
Q Consensus 105 L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~ 184 (485)
+++|.++.. +..+ .++|+.|++++|.. ..+.. .+ ..+|+.|+++++. +..+++.
T Consensus 227 Ls~N~LtsL-P~~l---~~~L~~L~Ls~N~L------~~LP~----~l--~s~L~~L~Ls~N~------L~~LP~~---- 280 (754)
T PRK15370 227 ANSNQLTSI-PATL---PDTIQEMELSINRI------TELPE----RL--PSALQSLDLFHNK------ISCLPEN---- 280 (754)
T ss_pred CCCCccccC-Chhh---hccccEEECcCCcc------CcCCh----hH--hCCCCEEECcCCc------cCccccc----
Confidence 998877532 2222 35799999999632 11111 11 2468888887643 1112211
Q ss_pred HhhcCCCccEEEeCCC
Q 011445 185 LSEGCKGLESVRLGGF 200 (485)
Q Consensus 185 l~~~~~~L~~L~l~~~ 200 (485)
-+++|+.|+++++
T Consensus 281 ---l~~sL~~L~Ls~N 293 (754)
T PRK15370 281 ---LPEELRYLSVYDN 293 (754)
T ss_pred ---cCCCCcEEECCCC
Confidence 1246777777765
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.16 E-value=2.6e-07 Score=77.11 Aligned_cols=104 Identities=23% Similarity=0.210 Sum_probs=24.5
Q ss_pred CCCCEEEccCCCCCcHHHhhccc-CCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCC
Q 011445 267 RNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTI 345 (485)
Q Consensus 267 ~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 345 (485)
..+++|++.++ .++. ++.+. .+.+|+.|++++|.+.... .+. .+++|+.|+++++. ++..+- .+. ..
T Consensus 19 ~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~--~l~-~L~~L~~L~L~~N~-I~~i~~-~l~----~~ 86 (175)
T PF14580_consen 19 VKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITKLE--GLP-GLPRLKTLDLSNNR-ISSISE-GLD----KN 86 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T--T-----TT--EEE--SS----S-CH-HHH----HH
T ss_pred ccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcccc--Ccc-ChhhhhhcccCCCC-CCcccc-chH----Hh
Confidence 44566666553 3322 23333 3556666666666554321 111 25566666666554 433211 111 13
Q ss_pred CCCccEEecCCCCCCCHH-HHHHHHhhCCCCcEEEecCCC
Q 011445 346 SQSLTTLDLGYMPGISDD-GILTIAAAGIGIIDLCVRSCF 384 (485)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~ 384 (485)
+|+|++|.++++ .+.+. .+..+ ..+++|+.|++.+|+
T Consensus 87 lp~L~~L~L~~N-~I~~l~~l~~L-~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNELEPL-SSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGG-GG-TT--EEE-TT-G
T ss_pred CCcCCEEECcCC-cCCChHHhHHH-HcCCCcceeeccCCc
Confidence 456666666653 44331 12222 245666666666655
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.08 E-value=2.1e-06 Score=75.35 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred CccEEEcccCCCCCHHHHHHhhCCCCCCEEEccC
Q 011445 243 ALVEVRLLWCRLITSETVKKLASSRNLEVLDLGG 276 (485)
Q Consensus 243 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 276 (485)
.|+.|++.++..-.-+.+..++++|.|+++.+.+
T Consensus 375 SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 375 SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 4566666654432334455667777777777766
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.90 E-value=4.7e-06 Score=87.39 Aligned_cols=230 Identities=20% Similarity=0.223 Sum_probs=110.5
Q ss_pred CCCccEEEecccC--CChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCcc
Q 011445 97 SFNLRSLSLVLDV--ITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 174 (485)
Q Consensus 97 ~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 174 (485)
++.|+.|-+..+. +... ...+...+|.|+.||+++|.. +. .-+..++.+-+||+|+++++.
T Consensus 544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~--------l~-~LP~~I~~Li~LryL~L~~t~------- 606 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSS--------LS-KLPSSIGELVHLRYLDLSDTG------- 606 (889)
T ss_pred CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCc--------cC-cCChHHhhhhhhhcccccCCC-------
Confidence 4567777666543 2222 223345578888888887522 21 223456677777788877643
Q ss_pred CccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCC-CCCHHHHHHHHcCCCCccEEEcccCC
Q 011445 175 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS-FLSDLAFHDLTGVPCALVEVRLLWCR 253 (485)
Q Consensus 175 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~ 253 (485)
++ .+..-...+..|.+|++..+...... ..+...+++|+.|.+.... ..+...+..+ ..+.+|+.+.+....
T Consensus 607 --I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 607 --IS--HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISS 679 (889)
T ss_pred --cc--ccchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecch
Confidence 22 11111123456777777664332211 3334556788888776653 1122222222 334455555543321
Q ss_pred CCCHHHHHHhhCCCCCCE----EEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHH----h-cCCCccEEEc
Q 011445 254 LITSETVKKLASSRNLEV----LDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILA----Q-GNLPIMNLCL 324 (485)
Q Consensus 254 ~l~~~~~~~l~~l~~L~~----L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~----~-~~~~L~~L~l 324 (485)
......+...+.|.. +.+.++. .......+..+++|+.|.+.++.+.+..+.... . .++++..+.+
T Consensus 680 ---~~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 680 ---VLLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred ---hHhHhhhhhhHHHHHHhHhhhhcccc--cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 111122222222221 1111111 111223345677888888887766543221100 0 1344555555
Q ss_pred cCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCH
Q 011445 325 RGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 362 (485)
Q Consensus 325 ~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~ 362 (485)
.+|....+.....+ .++|+.|.+.+|+.+.+
T Consensus 755 ~~~~~~r~l~~~~f-------~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 755 LNCHMLRDLTWLLF-------APHLTSLSLVSCRLLED 785 (889)
T ss_pred hccccccccchhhc-------cCcccEEEEeccccccc
Confidence 55554443333333 37888888887765543
No 44
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.81 E-value=7.7e-06 Score=79.88 Aligned_cols=343 Identities=23% Similarity=0.296 Sum_probs=198.1
Q ss_pred ccEEEecccCCChHHHHHHHhc---CCCCcEEecCCCCCCCcccccccChhHhhhcC----CC-CCcceEEeCCccccCC
Q 011445 100 LRSLSLVLDVITDELLITITAS---LPFLVELDLEDRPNTEPLARLDLTSSGLQSLG----SC-HHLTGLSLTRCRHNHQ 171 (485)
Q Consensus 100 L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~ 171 (485)
+..|.|.++.+.+.....+++. .+.|..|++++ +.+++.+...+. .. +.++.|++..|.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~---------n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~---- 155 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSG---------NNLGDEGARLLCEGLRLPQCLLQTLELVSCS---- 155 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhccc---------CCCccHhHHHHHhhcccchHHHHHHHhhccc----
Confidence 7788888888877777666554 57888899999 566677766552 32 567777777765
Q ss_pred CccCccCcHhHHHHh---hcCCCccEEEeCCCCCCCHHHHHHH---HH----hCCCCcEEEecCCCCCCHHHHH---HHH
Q 011445 172 GTFKRVNDMGMFLLS---EGCKGLESVRLGGFSKVSDAGFAAI---LL----SCHSLKKFEVRSASFLSDLAFH---DLT 238 (485)
Q Consensus 172 ~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~---~~----~~~~L~~L~l~~~~~~~~~~~~---~~~ 238 (485)
++..+...+. .....++.++++.+... ..+...+ ++ ...+++.|++.+|. ++..... ...
T Consensus 156 -----l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l 228 (478)
T KOG4308|consen 156 -----LTSEGAAPLAAVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVL 228 (478)
T ss_pred -----ccccchHHHHHHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHH
Confidence 4444433332 23677888888876443 3333222 22 24578888888885 4433322 233
Q ss_pred cCCCC-ccEEEcccCCCCCHHHHHHhh----CC-CCCCEEEccCCCCCcHHHhhc----ccCCCCCCEEEcCCCCCChHH
Q 011445 239 GVPCA-LVEVRLLWCRLITSETVKKLA----SS-RNLEVLDLGGCKSIADTCLRS----ISCLRKLTALNLTGADITDSG 308 (485)
Q Consensus 239 ~~~~~-L~~L~l~~~~~l~~~~~~~l~----~l-~~L~~L~l~~~~~~~~~~l~~----l~~~~~L~~L~l~~~~l~~~~ 308 (485)
...+. +.++++..+. +.+.++..+. .+ +.++++++..+ .+++.+... +..++.++.+.+..+.+.+.+
T Consensus 229 ~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 229 ASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred hccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 44444 6668887644 6777666554 23 56788888875 555544433 346788999999888888877
Q ss_pred HHHHHh---cCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCcc-EEecCCCCCCCHHHHHHHHhh----CCCCcEEEe
Q 011445 309 LSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLT-TLDLGYMPGISDDGILTIAAA----GIGIIDLCV 380 (485)
Q Consensus 309 ~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l 380 (485)
...+.. ....+.++.+.++...+......+.. ......+. ...+++ ....+.+...+... -+.+..+++
T Consensus 307 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (478)
T KOG4308|consen 307 VELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAE--ADAQRQLLSELGISG-NRVGEEGLALLVLAKSNPKSELLRLSL 383 (478)
T ss_pred HHHHHHHhhhcccchhhhccccCccchhHHHHHHH--HHHHhhhhHHHHhhh-ccchHHHHHHHhhhhcccCcccchhhh
Confidence 665544 23445555555444222221111110 00112222 222333 34444444333221 233555666
Q ss_pred cCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhc---CCCCCCceEEeecceeccCCCchhHHHHhh
Q 011445 381 RSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK---RPSFRGLHWLGIGQTRLASKGNPVITEIHN 457 (485)
Q Consensus 381 ~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 457 (485)
..+. +...+...++.... ..+.++.++++.. ...+++...+. ..+. .++.+.++.+++.....++..+...
T Consensus 384 ~~~~-~~~~~~~~l~~~~~---~~~~l~~~~l~~n-~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 457 (478)
T KOG4308|consen 384 NSQV-IEGRGALRLAAQLA---SNEKLEILDLSLN-SLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQRALA 457 (478)
T ss_pred hccc-cccHHHHHhhhhhh---hcchhhhhhhhcC-ccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHHHHh
Confidence 5554 33333333322111 4788999999873 34443333322 2345 8999999999998877888888877
Q ss_pred hCCCce-EeccCccccc
Q 011445 458 ERPWLT-FCLDGCEIGC 473 (485)
Q Consensus 458 ~~~~l~-~~~~~~~~~~ 473 (485)
..++.. +..++|.++.
T Consensus 458 ~~~~~~~~~~~~~~~~~ 474 (478)
T KOG4308|consen 458 LNPGILAIRLRGNVIGR 474 (478)
T ss_pred cCCCcceeecccCcccc
Confidence 778777 4565665554
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.65 E-value=1.5e-05 Score=83.73 Aligned_cols=257 Identities=17% Similarity=0.106 Sum_probs=130.7
Q ss_pred CCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccc-cChhHhhhcCCCCCcceEEeCCccccCCCccC
Q 011445 97 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLD-LTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK 175 (485)
Q Consensus 97 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 175 (485)
....+...+.++.+.... -...+|+|++|-+.++ .. +.......|..++.|+.||+++|.. ..
T Consensus 522 ~~~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n--------~~~l~~is~~ff~~m~~LrVLDLs~~~~-----l~ 585 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRN--------SDWLLEISGEFFRSLPLLRVLDLSGNSS-----LS 585 (889)
T ss_pred hhheeEEEEeccchhhcc---CCCCCCccceEEEeec--------chhhhhcCHHHHhhCcceEEEECCCCCc-----cC
Confidence 344556655544432111 1123678888888774 21 3333344467889999999987641 12
Q ss_pred ccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCC-C
Q 011445 176 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR-L 254 (485)
Q Consensus 176 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~ 254 (485)
.++ .....+-+|+.|+++++ .+. .++.-+..+..|.+|++..+...... ..+...+++|+.|.+.... .
T Consensus 586 ~LP-----~~I~~Li~LryL~L~~t-~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~ 655 (889)
T KOG4658|consen 586 KLP-----SSIGELVHLRYLDLSDT-GIS--HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALS 655 (889)
T ss_pred cCC-----hHHhhhhhhhcccccCC-Ccc--ccchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeeccccc
Confidence 222 22224567888888874 444 23333556678888888776432111 2333446788888886532 2
Q ss_pred CCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCE----EEcCCCCCChHHHHHHHhcCCCccEEEccCCCCC
Q 011445 255 ITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTA----LNLTGADITDSGLSILAQGNLPIMNLCLRGCKRV 330 (485)
Q Consensus 255 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~----L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l 330 (485)
.+...+..+..+..|+.+.+..+.. ..+..+...++|.. +.+.++. ..........+.+|+.|.+.+|. .
T Consensus 656 ~~~~~l~el~~Le~L~~ls~~~~s~---~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L~i~~~~-~ 729 (889)
T KOG4658|consen 656 NDKLLLKELENLEHLENLSITISSV---LLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEELSILDCG-I 729 (889)
T ss_pred cchhhHHhhhcccchhhheeecchh---HhHhhhhhhHHHHHHhHhhhhcccc--cceeecccccccCcceEEEEcCC-C
Confidence 2333344455566666666644211 11222222222222 2211111 01111112236788888888886 3
Q ss_pred ChhhHHhHhhhcCCC-CCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH
Q 011445 331 TDKGISHLLCVGGTI-SQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD 388 (485)
Q Consensus 331 ~~~~~~~l~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 388 (485)
.+..+.......... ++++..+.+..|+...+..... ..|+|+.|.+.+|..+.+
T Consensus 730 ~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 730 SEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSLSLVSCRLLED 785 (889)
T ss_pred chhhcccccccchhhhHHHHHHHHhhccccccccchhh---ccCcccEEEEeccccccc
Confidence 222111111000011 3456666666665554433332 238899999988875544
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.53 E-value=6.4e-06 Score=80.93 Aligned_cols=243 Identities=21% Similarity=0.176 Sum_probs=130.2
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCC-CCcHHHh
Q 011445 207 GFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCK-SIADTCL 285 (485)
Q Consensus 207 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~l 285 (485)
.+..++.-+++++.|.+-..+.-.... +--...+..|+.|.+.+|+.-+..++..+. ..|++|--.+.. .+.+...
T Consensus 75 qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~GL~~lr--~qLe~LIC~~Sl~Al~~v~a 151 (1096)
T KOG1859|consen 75 QLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKGLQELR--HQLEKLICHNSLDALRHVFA 151 (1096)
T ss_pred HHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhhhHHHH--HhhhhhhhhccHHHHHHHHH
Confidence 344455556777777665542111110 111224678999999998754544554443 234443221100 0000000
Q ss_pred h---ccc---CCCCCCEEEcCCCCCC--hHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCC
Q 011445 286 R---SIS---CLRKLTALNLTGADIT--DSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 357 (485)
Q Consensus 286 ~---~l~---~~~~L~~L~l~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~ 357 (485)
. .++ ..-.|...+.+.|.+. |..+. .++.|+.|+++.+. +.+.. .+ ..+++|++|+|+++
T Consensus 152 scggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq----ll~ale~LnLshNk-~~~v~--~L-----r~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 152 SCGGDISNSPVWNKLATASFSYNRLVLMDESLQ----LLPALESLNLSHNK-FTKVD--NL-----RRLPKLKHLDLSYN 219 (1096)
T ss_pred HhccccccchhhhhHhhhhcchhhHHhHHHHHH----HHHHhhhhccchhh-hhhhH--HH-----Hhcccccccccccc
Confidence 0 011 1123445555555332 33332 35789999999886 54443 22 36889999999985
Q ss_pred CCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCH-HHHHhhcCCCCCCceE
Q 011445 358 PGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV-DSLRWVKRPSFRGLHW 436 (485)
Q Consensus 358 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~~L~~ 436 (485)
.++...-... ..|. |+.|.+++|. ++. +..+.+ +++|+.||+++ +-+.+ ..+..+- .+..|+.
T Consensus 220 -~L~~vp~l~~-~gc~-L~~L~lrnN~-l~t--L~gie~-------LksL~~LDlsy-Nll~~hseL~pLw--sLs~L~~ 283 (1096)
T KOG1859|consen 220 -CLRHVPQLSM-VGCK-LQLLNLRNNA-LTT--LRGIEN-------LKSLYGLDLSY-NLLSEHSELEPLW--SLSSLIV 283 (1096)
T ss_pred -hhccccccch-hhhh-heeeeecccH-HHh--hhhHHh-------hhhhhccchhH-hhhhcchhhhHHH--HHHHHHH
Confidence 4432211111 1344 9999998886 332 333333 77899999998 34443 1222222 3458999
Q ss_pred EeecceeccCC--CchhH-HHHhhhCCCceEeccCccccccccceee
Q 011445 437 LGIGQTRLASK--GNPVI-TEIHNERPWLTFCLDGCEIGCHDGWQFH 480 (485)
Q Consensus 437 L~l~~~~~~~~--~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~w~~~ 480 (485)
|++.+|++--. ..+.. +.+..+.--..+.+++-.++....|+..
T Consensus 284 L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~~efwk~~ 330 (1096)
T KOG1859|consen 284 LWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGGREFWKRQ 330 (1096)
T ss_pred HhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccchhhhhhh
Confidence 99999996522 22222 2233222233478888888888888753
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.44 E-value=3.9e-05 Score=52.16 Aligned_cols=59 Identities=31% Similarity=0.301 Sum_probs=30.1
Q ss_pred CCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCc
Q 011445 98 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC 166 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 166 (485)
|+|++|+++.|.++......+ ..+++|++|++++ +.++......+..+++|+.|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f-~~l~~L~~L~l~~---------N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF-SNLPNLETLDLSN---------NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTT-TTGTTESEEEETS---------SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHH-cCCCCCCEeEccC---------CccCccCHHHHcCCCCCCEEeCcCC
Confidence 355666666555543322222 3356666666665 3444444444555566666665543
No 48
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.39 E-value=2.1e-05 Score=76.87 Aligned_cols=94 Identities=26% Similarity=0.279 Sum_probs=47.1
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhh---CCC-CcEEEecCCCCCCHHHHHHHHhhCCCCcCC-CCCcEEeccCCCCCCH
Q 011445 346 SQSLTTLDLGYMPGISDDGILTIAAA---GIG-IIDLCVRSCFYVTDASVEALARKQPDQEKS-KQLRRLDLCNCIGLSV 420 (485)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~-L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l~~ 420 (485)
..++++|++.+| .++......+... .+. +.+|++..| .+.|.+++.+..... .+ +.+++++++.| .+++
T Consensus 203 ~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~---~~~~~l~~l~l~~n-si~~ 276 (478)
T KOG4308|consen 203 LSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLS---VLSETLRVLDLSRN-SITE 276 (478)
T ss_pred cccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhc---ccchhhhhhhhhcC-Cccc
Confidence 345666666665 4444433333222 223 444555444 366655555555333 23 44566666664 5555
Q ss_pred HHHHhhc--CCCCCCceEEeecceecc
Q 011445 421 DSLRWVK--RPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 421 ~~~~~l~--~~~~~~L~~L~l~~~~~~ 445 (485)
.+...+. ...++.++.+.++.|++.
T Consensus 277 ~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 277 KGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4443332 124556666666666655
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.29 E-value=6.5e-05 Score=51.04 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=18.1
Q ss_pred hhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCC
Q 011445 263 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA 302 (485)
Q Consensus 263 l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 302 (485)
+..+++|++|++++ +.+.......+..+++|++|++++|
T Consensus 21 f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 33445555555554 2333333333444555555555544
No 50
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.08 E-value=2.9e-06 Score=68.27 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=42.9
Q ss_pred ccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCC
Q 011445 93 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTR 165 (485)
Q Consensus 93 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 165 (485)
.+.++++++.|.|++|+++.. .+.++. +.+|+.|++.++ ++.+. ..+++.++.|+.|+++-
T Consensus 28 gLf~~s~ITrLtLSHNKl~~v-ppnia~-l~nlevln~~nn---------qie~l-p~~issl~klr~lnvgm 88 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVV-PPNIAE-LKNLEVLNLSNN---------QIEEL-PTSISSLPKLRILNVGM 88 (264)
T ss_pred cccchhhhhhhhcccCceeec-CCcHHH-hhhhhhhhcccc---------hhhhc-Chhhhhchhhhheecch
Confidence 336678889999998887654 344555 889999999884 44332 34567788888888853
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.03 E-value=7.3e-05 Score=73.78 Aligned_cols=202 Identities=15% Similarity=0.077 Sum_probs=107.1
Q ss_pred HHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHH
Q 011445 183 FLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKK 262 (485)
Q Consensus 183 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 262 (485)
..+...+++++.|.+-..+.-...+... +-.+.+|+.|.+.+|..-...++..+. .+|++|.-.+ +-.++..
T Consensus 77 q~i~d~lqkt~~lkl~~~pa~~pt~pi~-ifpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~----Sl~Al~~ 148 (1096)
T KOG1859|consen 77 QRILDFLQKTKVLKLLPSPARDPTEPIS-IFPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHN----SLDALRH 148 (1096)
T ss_pred HHHHHHHhhheeeeecccCCCCCCCCce-eccccceeeEEecCcchhhhhhhHHHH---Hhhhhhhhhc----cHHHHHH
Confidence 3444455666666665433222111111 223489999999999643334443332 3455554322 1112222
Q ss_pred h-h-----CCCCCCE-----EEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCC
Q 011445 263 L-A-----SSRNLEV-----LDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT 331 (485)
Q Consensus 263 l-~-----~l~~L~~-----L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 331 (485)
+ + .+....+ .+.+. +.+... -..+.-++.++.|+++.|++.+.. .+. .|+.|++|+|+.+. +.
T Consensus 149 v~ascggd~~ns~~Wn~L~~a~fsy-N~L~~m-D~SLqll~ale~LnLshNk~~~v~--~Lr-~l~~LkhLDlsyN~-L~ 222 (1096)
T KOG1859|consen 149 VFASCGGDISNSPVWNKLATASFSY-NRLVLM-DESLQLLPALESLNLSHNKFTKVD--NLR-RLPKLKHLDLSYNC-LR 222 (1096)
T ss_pred HHHHhccccccchhhhhHhhhhcch-hhHHhH-HHHHHHHHHhhhhccchhhhhhhH--HHH-hcccccccccccch-hc
Confidence 1 1 1122222 22222 122110 112234588999999999887754 444 48999999999876 43
Q ss_pred hhhHHhHhhhcCCCCCCccEEecCCCCCCCH-HHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEE
Q 011445 332 DKGISHLLCVGGTISQSLTTLDLGYMPGISD-DGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRL 410 (485)
Q Consensus 332 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L 410 (485)
...-.. ....+|+.|.+.++ .++. .+++ ++.+|+.|++++|-......+..+.. +..|+.|
T Consensus 223 ~vp~l~------~~gc~L~~L~lrnN-~l~tL~gie----~LksL~~LDlsyNll~~hseL~pLws-------Ls~L~~L 284 (1096)
T KOG1859|consen 223 HVPQLS------MVGCKLQLLNLRNN-ALTTLRGIE----NLKSLYGLDLSYNLLSEHSELEPLWS-------LSSLIVL 284 (1096)
T ss_pred cccccc------hhhhhheeeeeccc-HHHhhhhHH----hhhhhhccchhHhhhhcchhhhHHHH-------HHHHHHH
Confidence 322111 11234999999885 3332 2333 45789999999885333333333333 5568889
Q ss_pred eccCCC
Q 011445 411 DLCNCI 416 (485)
Q Consensus 411 ~l~~c~ 416 (485)
.+.|.+
T Consensus 285 ~LeGNP 290 (1096)
T KOG1859|consen 285 WLEGNP 290 (1096)
T ss_pred hhcCCc
Confidence 988743
No 52
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.82 E-value=0.0013 Score=35.61 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=17.1
Q ss_pred CCCCcEEeccCCCCCCHHHHHhhc
Q 011445 404 SKQLRRLDLCNCIGLSVDSLRWVK 427 (485)
Q Consensus 404 ~~~L~~L~l~~c~~l~~~~~~~l~ 427 (485)
||+|+.|++++|+++|+.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 467777777777777777776654
No 53
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.67 E-value=0.0023 Score=34.60 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=14.7
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHH
Q 011445 372 GIGIIDLCVRSCFYVTDASVEALA 395 (485)
Q Consensus 372 ~~~L~~L~l~~~~~l~~~~~~~l~ 395 (485)
|++|++|++++|..++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 455666666666666666665554
No 54
>PLN03150 hypothetical protein; Provisional
Probab=96.56 E-value=0.0055 Score=63.03 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=36.6
Q ss_pred CCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 011445 294 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 373 (485)
Q Consensus 294 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 373 (485)
++.|++.++.+.......+. .+++|+.|+++++. +.......+. .+++|+.|+++++ .++...-..+ ..++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~-l~g~iP~~~~-----~l~~L~~LdLs~N-~lsg~iP~~l-~~L~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNS-IRGNIPPSLG-----SITSLEVLDLSYN-SFNGSIPESL-GQLT 490 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCc-ccCcCChHHh-----CCCCCCEEECCCC-CCCCCCchHH-hcCC
Confidence 45555555544332222232 25556666665554 2211111122 4556666666654 3332211222 2455
Q ss_pred CCcEEEecCCC
Q 011445 374 GIIDLCVRSCF 384 (485)
Q Consensus 374 ~L~~L~l~~~~ 384 (485)
+|+.|++++|.
T Consensus 491 ~L~~L~Ls~N~ 501 (623)
T PLN03150 491 SLRILNLNGNS 501 (623)
T ss_pred CCCEEECcCCc
Confidence 66666665553
No 55
>PLN03150 hypothetical protein; Provisional
Probab=96.51 E-value=0.006 Score=62.76 Aligned_cols=108 Identities=19% Similarity=0.083 Sum_probs=58.9
Q ss_pred CCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCC
Q 011445 269 LEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS 348 (485)
Q Consensus 269 L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 348 (485)
++.|+++++ .+.......+..+++|+.|++++|.+.......+. .+++|+.|+++++. +.......+. .+++
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~-lsg~iP~~l~-----~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNS-FNGSIPESLG-----QLTS 491 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCC-CCCCCchHHh-----cCCC
Confidence 556666663 34333334456677777777777765543322333 36777777777765 4332222233 5667
Q ss_pred ccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCC
Q 011445 349 LTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFY 385 (485)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 385 (485)
|+.|+++++ .++...-..+.....++..+++.+|..
T Consensus 492 L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 492 LRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCEEECcCC-cccccCChHHhhccccCceEEecCCcc
Confidence 777777775 444322222222234556777776653
No 56
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.50 E-value=3.6e-05 Score=62.12 Aligned_cols=59 Identities=31% Similarity=0.245 Sum_probs=29.8
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCC
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTR 165 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 165 (485)
..+.+|+.|++++|++.+. +..+. .+|+|+.|++.-+ .+. .....++.+|.|+.|++.+
T Consensus 53 a~l~nlevln~~nnqie~l-p~~is-sl~klr~lnvgmn---------rl~-~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 53 AELKNLEVLNLSNNQIEEL-PTSIS-SLPKLRILNVGMN---------RLN-ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred HHhhhhhhhhcccchhhhc-Chhhh-hchhhhheecchh---------hhh-cCccccCCCchhhhhhccc
Confidence 3455666666666655332 23333 2666666665542 111 1123355666666666654
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.30 E-value=0.00046 Score=60.02 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=50.2
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH-HHHHHHHhhCCCCcCCCCCcEEeccCCC--CCCHH
Q 011445 345 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD-ASVEALARKQPDQEKSKQLRRLDLCNCI--GLSVD 421 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~~~~~L~~L~l~~c~--~l~~~ 421 (485)
.+|+|+.|.++.+..-...++..++..+|+|++|++++|. +.+ ..+..+.. +++|..|++.+|. ++.+.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~-------l~nL~~Ldl~n~~~~~l~dy 134 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKE-------LENLKSLDLFNCSVTNLDDY 134 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhh-------hcchhhhhcccCCccccccH
Confidence 4567777777764222334566666677888888887775 443 23344443 6777788887774 22332
Q ss_pred HHHhhcCCCCCCceEEeecc
Q 011445 422 SLRWVKRPSFRGLHWLGIGQ 441 (485)
Q Consensus 422 ~~~~l~~~~~~~L~~L~l~~ 441 (485)
--..+. .+|+|+.|+-..
T Consensus 135 re~vf~--ll~~L~~LD~~d 152 (260)
T KOG2739|consen 135 REKVFL--LLPSLKYLDGCD 152 (260)
T ss_pred HHHHHH--Hhhhhccccccc
Confidence 222222 456777766544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.16 E-value=0.011 Score=56.15 Aligned_cols=135 Identities=17% Similarity=0.315 Sum_probs=63.4
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCC
Q 011445 188 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSR 267 (485)
Q Consensus 188 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 267 (485)
.|++++.|++++| .+... + .-.++|+.|.+.+|..+... +.. ..++|+.|.+.+|..+.. + .+
T Consensus 50 ~~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLtsL--P~~--LP~nLe~L~Ls~Cs~L~s-----L--P~ 112 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTTL--PGS--IPEGLEKLTVCHCPEISG-----L--PE 112 (426)
T ss_pred HhcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCcccC--Cch--hhhhhhheEccCcccccc-----c--cc
Confidence 3577888888876 33321 1 11236777777776543211 111 124677777776654321 1 14
Q ss_pred CCCEEEccCCCCCcHHHhhcccCC-CCCCEEEcCCCC-CChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCC
Q 011445 268 NLEVLDLGGCKSIADTCLRSISCL-RKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTI 345 (485)
Q Consensus 268 ~L~~L~l~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 345 (485)
+|+.|++.. .... .+..+ ++|+.|.+.+++ ........ ...++|+.|.+++|..+. +.. ..
T Consensus 113 sLe~L~L~~-n~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~------LP~---~L 175 (426)
T PRK15386 113 SVRSLEIKG-SATD-----SIKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII------LPE---KL 175 (426)
T ss_pred ccceEEeCC-CCCc-----ccccCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc------Ccc---cc
Confidence 566666643 1211 11222 456666664321 11011110 012467777777666331 010 12
Q ss_pred CCCccEEecCC
Q 011445 346 SQSLTTLDLGY 356 (485)
Q Consensus 346 ~~~L~~L~l~~ 356 (485)
..+|+.|.++.
T Consensus 176 P~SLk~L~ls~ 186 (426)
T PRK15386 176 PESLQSITLHI 186 (426)
T ss_pred cccCcEEEecc
Confidence 25677777654
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.0012 Score=57.99 Aligned_cols=112 Identities=21% Similarity=0.186 Sum_probs=67.2
Q ss_pred CCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCCh-hhHHhHhhhcCC
Q 011445 266 SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD-KGISHLLCVGGT 344 (485)
Q Consensus 266 l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~ 344 (485)
+.+.+.|+..+| .++|..+ ..++|.|+.|.|+-|.|+.. ..+. .|.+|++|.|..+. +.+ ..+..+.
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIssL--~pl~-rCtrLkElYLRkN~-I~sldEL~YLk----- 85 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKISSL--APLQ-RCTRLKELYLRKNC-IESLDELEYLK----- 85 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--HHhcccceeEEeeccccccc--hhHH-HHHHHHHHHHHhcc-cccHHHHHHHh-----
Confidence 456777888886 5655443 34778888888888877643 3333 37888888887765 433 2333333
Q ss_pred CCCCccEEecCCCCCCCHH---HHHHHHhhCCCCcEEEecCCCCCCHHHHH
Q 011445 345 ISQSLTTLDLGYMPGISDD---GILTIAAAGIGIIDLCVRSCFYVTDASVE 392 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 392 (485)
.+|+|+.|-|..++=.... .=..+.+.+|+|++|+ |..++...++
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle 133 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELE 133 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHH
Confidence 6778888877654322222 1223345678888875 3345554443
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.65 E-value=0.0034 Score=54.79 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCH-HHHHhhcCCCCCCceEEeecceeccCCCch
Q 011445 372 GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV-DSLRWVKRPSFRGLHWLGIGQTRLASKGNP 450 (485)
Q Consensus 372 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~ 450 (485)
+|+|+.|.++.|..--..++..++. .+|+|+++.+++ +++.+ .++..+. .+++|..|++..|..+. ..+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e------~~P~l~~l~ls~-Nki~~lstl~pl~--~l~nL~~Ldl~n~~~~~-l~d 133 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAE------KAPNLKVLNLSG-NKIKDLSTLRPLK--ELENLKSLDLFNCSVTN-LDD 133 (260)
T ss_pred cchhhhhcccCCcccccccceehhh------hCCceeEEeecC-Cccccccccchhh--hhcchhhhhcccCCccc-ccc
Confidence 5899999999885344445666776 689999999999 57774 4454444 57789999999999876 355
Q ss_pred hHHHHhhhCCCceE
Q 011445 451 VITEIHNERPWLTF 464 (485)
Q Consensus 451 ~~~~~~~~~~~l~~ 464 (485)
.-..+....|.+++
T Consensus 134 yre~vf~ll~~L~~ 147 (260)
T KOG2739|consen 134 YREKVFLLLPSLKY 147 (260)
T ss_pred HHHHHHHHhhhhcc
Confidence 55566666777774
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.53 E-value=0.024 Score=35.16 Aligned_cols=17 Identities=41% Similarity=0.556 Sum_probs=7.5
Q ss_pred ccCCCCCCEEEcCCCCC
Q 011445 288 ISCLRKLTALNLTGADI 304 (485)
Q Consensus 288 l~~~~~L~~L~l~~~~l 304 (485)
++.+++|+.|++++|.+
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 34444444444444433
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.0049 Score=54.25 Aligned_cols=35 Identities=29% Similarity=0.225 Sum_probs=16.2
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCC
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED 132 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 132 (485)
..++.|+.|.|+-|+++. +..+. .|.+|++|.|..
T Consensus 38 ~kMp~lEVLsLSvNkIss--L~pl~-rCtrLkElYLRk 72 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISS--LAPLQ-RCTRLKELYLRK 72 (388)
T ss_pred HhcccceeEEeecccccc--chhHH-HHHHHHHHHHHh
Confidence 444555555555444432 22222 255555555554
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.45 E-value=0.012 Score=57.31 Aligned_cols=173 Identities=23% Similarity=0.296 Sum_probs=93.8
Q ss_pred CCCCcEEecCCCCCCCcccccccChhHhhhcCCC-CCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCC
Q 011445 122 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSC-HHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGF 200 (485)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 200 (485)
.+.++.|++.++. ++... ...... ++|+.|++++.. +... ..-...+++|+.|+++.+
T Consensus 115 ~~~l~~L~l~~n~---------i~~i~-~~~~~~~~nL~~L~l~~N~---------i~~l--~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 115 LTNLTSLDLDNNN---------ITDIP-PLIGLLKSNLKELDLSDNK---------IESL--PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ccceeEEecCCcc---------cccCc-cccccchhhcccccccccc---------hhhh--hhhhhccccccccccCCc
Confidence 4678888887742 22211 112233 378888886643 2211 011235778888888875
Q ss_pred CCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCC
Q 011445 201 SKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSI 280 (485)
Q Consensus 201 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 280 (485)
.+.+. .......++|+.|+++++. +.+ +.........|+++.++++..+. ....+..+.++..+.+.+ ..+
T Consensus 174 -~l~~l--~~~~~~~~~L~~L~ls~N~-i~~--l~~~~~~~~~L~~l~~~~N~~~~--~~~~~~~~~~l~~l~l~~-n~~ 244 (394)
T COG4886 174 -DLSDL--PKLLSNLSNLNNLDLSGNK-ISD--LPPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSN-NKL 244 (394)
T ss_pred -hhhhh--hhhhhhhhhhhheeccCCc-ccc--CchhhhhhhhhhhhhhcCCccee--cchhhhhcccccccccCC-cee
Confidence 33322 2222255788888888874 221 11111223457778887753222 122344556666666544 222
Q ss_pred cHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCC
Q 011445 281 ADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 328 (485)
Q Consensus 281 ~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 328 (485)
.+. ...++.+++++.|++++|.+.+... + ....+++.|++++..
T Consensus 245 ~~~-~~~~~~l~~l~~L~~s~n~i~~i~~--~-~~~~~l~~L~~s~n~ 288 (394)
T COG4886 245 EDL-PESIGNLSNLETLDLSNNQISSISS--L-GSLTNLRELDLSGNS 288 (394)
T ss_pred eec-cchhccccccceecccccccccccc--c-cccCccCEEeccCcc
Confidence 221 3344567778888888887665543 2 236778888887765
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.29 E-value=0.02 Score=48.12 Aligned_cols=89 Identities=16% Similarity=0.056 Sum_probs=40.9
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCH-HHH
Q 011445 345 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV-DSL 423 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~ 423 (485)
.++.|.+|.++++ .++... ..+....|+|..|.+.+|.-..-..+..++. ||.|+.|.+-+. .++. ..+
T Consensus 62 ~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-------~p~L~~Ltll~N-pv~~k~~Y 131 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLAS-------CPKLEYLTLLGN-PVEHKKNY 131 (233)
T ss_pred CccccceEEecCC-cceeec-cchhhhccccceEEecCcchhhhhhcchhcc-------CCccceeeecCC-chhcccCc
Confidence 3445555555543 343321 1111233556666665554211122333333 666666666663 3333 333
Q ss_pred HhhcCCCCCCceEEeeccee
Q 011445 424 RWVKRPSFRGLHWLGIGQTR 443 (485)
Q Consensus 424 ~~l~~~~~~~L~~L~l~~~~ 443 (485)
+..-...+|+|+.||+.+-.
T Consensus 132 R~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeEEEEecCcceEeehhhhh
Confidence 33333456666666665533
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.03 E-value=0.056 Score=33.54 Aligned_cols=33 Identities=36% Similarity=0.461 Sum_probs=15.3
Q ss_pred CccEEEecccCCChHHHHHHHhcCCCCcEEecCCC
Q 011445 99 NLRSLSLVLDVITDELLITITASLPFLVELDLEDR 133 (485)
Q Consensus 99 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 133 (485)
+|++|+++++.+++... .+ ..+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l-~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-EL-SNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HG-TTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCc-hH-hCCCCCCEEEecCC
Confidence 45556665555543211 13 33555555555554
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.63 E-value=0.058 Score=51.41 Aligned_cols=144 Identities=19% Similarity=0.300 Sum_probs=85.8
Q ss_pred HHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCC-CCCCEEEcCCC-CCChHHHHHHHhcCCCccEEEccCCCCCChhh
Q 011445 257 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCL-RKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKG 334 (485)
Q Consensus 257 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~-~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 334 (485)
++.+..+..+.+++.|++++| .+. .+..+ ++|+.|.+.+| .++.. ...+ .++|++|.+++|..+.
T Consensus 42 ~~a~~r~~~~~~l~~L~Is~c-~L~-----sLP~LP~sLtsL~Lsnc~nLtsL-P~~L---P~nLe~L~Ls~Cs~L~--- 108 (426)
T PRK15386 42 SEITPQIEEARASGRLYIKDC-DIE-----SLPVLPNELTEITIENCNNLTTL-PGSI---PEGLEKLTVCHCPEIS--- 108 (426)
T ss_pred HHHHHHHHHhcCCCEEEeCCC-CCc-----ccCCCCCCCcEEEccCCCCcccC-Cchh---hhhhhheEccCccccc---
Confidence 345555667899999999987 332 22233 46999999886 33211 1111 3579999999986543
Q ss_pred HHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccC
Q 011445 335 ISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN 414 (485)
Q Consensus 335 ~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 414 (485)
.+. ++|+.|++... .... +.. -.++|+.|.+.++....... +... -.++|+.|++++
T Consensus 109 --sLP-------~sLe~L~L~~n-~~~~--L~~---LPssLk~L~I~~~n~~~~~~---lp~~-----LPsSLk~L~Is~ 165 (426)
T PRK15386 109 --GLP-------ESVRSLEIKGS-ATDS--IKN---VPNGLTSLSINSYNPENQAR---IDNL-----ISPSLKTLSLTG 165 (426)
T ss_pred --ccc-------cccceEEeCCC-CCcc--ccc---CcchHhheeccccccccccc---cccc-----cCCcccEEEecC
Confidence 233 57888888742 3321 122 23578888885433111111 1110 136899999999
Q ss_pred CCCCCHHHHHhhcCCCC-CCceEEeeccee
Q 011445 415 CIGLSVDSLRWVKRPSF-RGLHWLGIGQTR 443 (485)
Q Consensus 415 c~~l~~~~~~~l~~~~~-~~L~~L~l~~~~ 443 (485)
|..+.. ...+ .+|+.|.++.+.
T Consensus 166 c~~i~L-------P~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 166 CSNIIL-------PEKLPESLQSITLHIEQ 188 (426)
T ss_pred CCcccC-------cccccccCcEEEecccc
Confidence 875421 1123 389999987763
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.54 E-value=0.032 Score=46.91 Aligned_cols=62 Identities=27% Similarity=0.220 Sum_probs=26.6
Q ss_pred CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHH-HHHHHhcCCCccEEEccCCC
Q 011445 265 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSG-LSILAQGNLPIMNLCLRGCK 328 (485)
Q Consensus 265 ~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~ 328 (485)
.++.|.+|.+.+ +.++......-..+|+|+.|.+.+|++...+ +..+. .||+|++|.+-+++
T Consensus 62 ~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 62 HLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLGNP 124 (233)
T ss_pred CccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcchhc-cCCccceeeecCCc
Confidence 344555555544 3333322111123455555555555443322 22222 35555555555544
No 68
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.53 E-value=0.06 Score=28.27 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=9.6
Q ss_pred CCCCEEEcCCCCCChHHHHHH
Q 011445 292 RKLTALNLTGADITDSGLSIL 312 (485)
Q Consensus 292 ~~L~~L~l~~~~l~~~~~~~l 312 (485)
++|++|+|++|.+++.++..+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555555554443
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.47 E-value=0.065 Score=52.17 Aligned_cols=78 Identities=28% Similarity=0.262 Sum_probs=37.8
Q ss_pred CccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhccc-CCCCCCEEEcCCCCCChHHHHHHHhcCCCccE
Q 011445 243 ALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMN 321 (485)
Q Consensus 243 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~ 321 (485)
+|+.|+++.+. +.... ..+..+++|+.|+++++ .+.+. .... ..++|+.|+++++++.+..... .....|++
T Consensus 141 nL~~L~l~~N~-i~~l~-~~~~~l~~L~~L~l~~N-~l~~l--~~~~~~~~~L~~L~ls~N~i~~l~~~~--~~~~~L~~ 213 (394)
T COG4886 141 NLKELDLSDNK-IESLP-SPLRNLPNLKNLDLSFN-DLSDL--PKLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEE 213 (394)
T ss_pred hcccccccccc-hhhhh-hhhhccccccccccCCc-hhhhh--hhhhhhhhhhhheeccCCccccCchhh--hhhhhhhh
Confidence 56666666543 22210 23455666666666663 33321 1111 4566666666666554432211 11233566
Q ss_pred EEccCC
Q 011445 322 LCLRGC 327 (485)
Q Consensus 322 L~l~~~ 327 (485)
|.++++
T Consensus 214 l~~~~N 219 (394)
T COG4886 214 LDLSNN 219 (394)
T ss_pred hhhcCC
Confidence 666555
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.87 E-value=0.084 Score=27.71 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=3.2
Q ss_pred CCcEEEecCC
Q 011445 374 GIIDLCVRSC 383 (485)
Q Consensus 374 ~L~~L~l~~~ 383 (485)
+|++|+|++|
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 3344444333
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.54 E-value=0.026 Score=55.19 Aligned_cols=106 Identities=24% Similarity=0.234 Sum_probs=55.2
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCcc
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 174 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 174 (485)
..+.+|+.|++..+.+.. +......+++|++|+++++ .|+. +..+..++.|+.|++.++...
T Consensus 92 ~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N---------~I~~--i~~l~~l~~L~~L~l~~N~i~----- 153 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFN---------KITK--LEGLSTLTLLKELNLSGNLIS----- 153 (414)
T ss_pred ccccceeeeeccccchhh--cccchhhhhcchheecccc---------cccc--ccchhhccchhhheeccCcch-----
Confidence 446777777777766533 2221234778888888874 3332 223445555777777765421
Q ss_pred CccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 011445 175 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS 227 (485)
Q Consensus 175 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 227 (485)
.+... ..+++|+.++++++. +....-.. ...+.+++.+.+.++.
T Consensus 154 -~~~~~------~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 154 -DISGL------ESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred -hccCC------ccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence 11110 124566666776642 22211101 2445666666666653
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.29 E-value=0.03 Score=54.79 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=21.7
Q ss_pred CcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccC
Q 011445 407 LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 407 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
|+.+++.+ +.+.... .. ...++.+..|++..+.+..
T Consensus 234 L~~l~l~~-n~i~~~~-~~--~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 234 LRELYLSG-NRISRSP-EG--LENLKNLPVLDLSSNRISN 269 (414)
T ss_pred HHHHhccc-Ccccccc-cc--ccccccccccchhhccccc
Confidence 67777777 3444421 11 1246688888888877663
No 73
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=89.67 E-value=0.56 Score=45.87 Aligned_cols=93 Identities=20% Similarity=0.177 Sum_probs=43.4
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCC-CCC-HHHHHhhcCCCCCCceEEeecceeccCC-
Q 011445 371 AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI-GLS-VDSLRWVKRPSFRGLHWLGIGQTRLASK- 447 (485)
Q Consensus 371 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~-~l~-~~~~~~l~~~~~~~L~~L~l~~~~~~~~- 447 (485)
+.|.+..+.+++|....-..+..++. ..|+|+.|+|++.. .+. ...+..+ ....|++|-+.+|++-+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq------~apklk~L~LS~N~~~~~~~~el~K~---k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQ------IAPKLKTLDLSHNHSKISSESELDKL---KGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHH------hcchhheeecccchhhhcchhhhhhh---cCCCHHHeeecCCccccch
Confidence 34555555555554333333444444 45556666665520 111 1122222 244566666666665433
Q ss_pred --CchhHHHHhhhCCCceEeccCccccc
Q 011445 448 --GNPVITEIHNERPWLTFCLDGCEIGC 473 (485)
Q Consensus 448 --~~~~~~~~~~~~~~l~~~~~~~~~~~ 473 (485)
.-+.+.++.+..|.+.. ++|.++.+
T Consensus 287 ~~~s~yv~~i~~~FPKL~~-LDG~ev~~ 313 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLR-LDGVEVQP 313 (585)
T ss_pred hhhHHHHHHHHHhcchhee-ecCcccCc
Confidence 23344455556665554 44544444
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.49 E-value=0.74 Score=25.21 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=15.4
Q ss_pred CCCCEEEcCCCCCChHHHHHHHh
Q 011445 292 RKLTALNLTGADITDSGLSILAQ 314 (485)
Q Consensus 292 ~~L~~L~l~~~~l~~~~~~~l~~ 314 (485)
++|++|+|++|.+.+.+...+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 45677777777777777666554
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=88.47 E-value=0.18 Score=39.81 Aligned_cols=37 Identities=30% Similarity=0.258 Sum_probs=18.9
Q ss_pred CCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCC
Q 011445 290 CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 328 (485)
Q Consensus 290 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 328 (485)
++|.++.|++++|.+.+.... +. .++.|+.|+++.++
T Consensus 75 kf~t~t~lNl~~neisdvPeE-~A-am~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEE-LA-AMPALRSLNLRFNP 111 (177)
T ss_pred ccchhhhhhcchhhhhhchHH-Hh-hhHHhhhcccccCc
Confidence 445556666665555444333 22 24555555555554
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.29 E-value=0.26 Score=38.93 Aligned_cols=107 Identities=20% Similarity=0.127 Sum_probs=59.4
Q ss_pred ccEEEccCCCCC-ChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhh
Q 011445 319 IMNLCLRGCKRV-TDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARK 397 (485)
Q Consensus 319 L~~L~l~~~~~l-~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 397 (485)
+..++++.|+-. -.+.+..+. ....|+..+++++ .+.+. -..+....|.++.|++.+|. +.+...+ ++.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~-----~~~el~~i~ls~N-~fk~f-p~kft~kf~t~t~lNl~~ne-isdvPeE-~Aa- 98 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLS-----KGYELTKISLSDN-GFKKF-PKKFTIKFPTATTLNLANNE-ISDVPEE-LAA- 98 (177)
T ss_pred hhhcccccchhhHHHHHHHHHh-----CCceEEEEecccc-hhhhC-CHHHhhccchhhhhhcchhh-hhhchHH-Hhh-
Confidence 556677777622 123333333 4567777777764 33221 12333345677888887774 6666554 555
Q ss_pred CCCCcCCCCCcEEeccCCCCCCH--HHHHhhcCCCCCCceEEeecceeccCC
Q 011445 398 QPDQEKSKQLRRLDLCNCIGLSV--DSLRWVKRPSFRGLHWLGIGQTRLASK 447 (485)
Q Consensus 398 ~~~~~~~~~L~~L~l~~c~~l~~--~~~~~l~~~~~~~L~~L~l~~~~~~~~ 447 (485)
+|.|+.|++... .+.. ..+.. +.+|-.|+..+|.....
T Consensus 99 ------m~aLr~lNl~~N-~l~~~p~vi~~-----L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 99 ------MPALRSLNLRFN-PLNAEPRVIAP-----LIKLDMLDSPENARAEI 138 (177)
T ss_pred ------hHHhhhcccccC-ccccchHHHHH-----HHhHHHhcCCCCccccC
Confidence 788888888774 3332 22222 33666666666665443
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.10 E-value=1.1 Score=24.51 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=15.8
Q ss_pred CCccEEEecccCCChHHHHHHHh
Q 011445 98 FNLRSLSLVLDVITDELLITITA 120 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~ 120 (485)
++|++|+|+.|.+.+.....+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777777777777776666654
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=81.70 E-value=1 Score=21.28 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=5.0
Q ss_pred CceEEeecceec
Q 011445 433 GLHWLGIGQTRL 444 (485)
Q Consensus 433 ~L~~L~l~~~~~ 444 (485)
+|+.|++++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555553
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.94 E-value=2.6 Score=41.46 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=47.6
Q ss_pred CCCCCCEEEcCCCCCCh-HHHHHHHhcCCCccEEEccCCCCC--ChhhHHhHhhhcCCCCCCccEEecCCCCCCCH----
Q 011445 290 CLRKLTALNLTGADITD-SGLSILAQGNLPIMNLCLRGCKRV--TDKGISHLLCVGGTISQSLTTLDLGYMPGISD---- 362 (485)
Q Consensus 290 ~~~~L~~L~l~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~l--~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~---- 362 (485)
+.|.+..+.+++|.+.. +.+..+.+..|+|+.|+|+++... ....+..+ ....|++|-+.+++-.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~------k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL------KGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh------cCCCHHHeeecCCccccchhhh
Confidence 56777777787775433 235556666777888888776211 11122211 245667777776543332
Q ss_pred -HHHHHHHhhCCCCcEEE
Q 011445 363 -DGILTIAAAGIGIIDLC 379 (485)
Q Consensus 363 -~~~~~l~~~~~~L~~L~ 379 (485)
+.+..+.+.+|+|..||
T Consensus 290 s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHHhcchheeec
Confidence 33444555567777665
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.64 E-value=1.5 Score=34.52 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=5.9
Q ss_pred Hhhccccceeeee
Q 011445 21 LTSCLQLESLSLK 33 (485)
Q Consensus 21 ~~~~~~L~~L~l~ 33 (485)
+.+|++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 4556666666655
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=74.76 E-value=1.2 Score=35.05 Aligned_cols=35 Identities=9% Similarity=0.245 Sum_probs=12.0
Q ss_pred hCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcC
Q 011445 264 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLT 300 (485)
Q Consensus 264 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~ 300 (485)
..+++|+.+.+.. .+....-..+..+++|+.+.+.
T Consensus 32 ~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 32 SNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEET
T ss_pred ccccccccccccc--cccccceeeeeccccccccccc
Confidence 3444455555433 1222222233344445555553
No 82
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=70.58 E-value=0.85 Score=44.94 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=64.5
Q ss_pred HhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhh
Q 011445 262 KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCV 341 (485)
Q Consensus 262 ~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 341 (485)
++.++..|..++++. +.+.... ..+ ..--|+.|-+++|+++... ..+. ..+.|..|+.+.|...+- ...+.
T Consensus 116 ~i~~L~~lt~l~ls~-NqlS~lp-~~l-C~lpLkvli~sNNkl~~lp-~~ig-~~~tl~~ld~s~nei~sl--psql~-- 186 (722)
T KOG0532|consen 116 AICNLEALTFLDLSS-NQLSHLP-DGL-CDLPLKVLIVSNNKLTSLP-EEIG-LLPTLAHLDVSKNEIQSL--PSQLG-- 186 (722)
T ss_pred hhhhhhHHHHhhhcc-chhhcCC-hhh-hcCcceeEEEecCccccCC-cccc-cchhHHHhhhhhhhhhhc--hHHhh--
Confidence 344566777777765 2222111 111 1234777777777554321 1122 356777777776652211 11111
Q ss_pred cCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCC
Q 011445 342 GGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 416 (485)
Q Consensus 342 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 416 (485)
.+.+|+.|.+... ++.+..- .+. +-.|..|+++.|. +....+ .+. +++.|++|.|.+.+
T Consensus 187 ---~l~slr~l~vrRn-~l~~lp~-El~--~LpLi~lDfScNk-is~iPv-~fr-------~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 187 ---YLTSLRDLNVRRN-HLEDLPE-ELC--SLPLIRLDFSCNK-ISYLPV-DFR-------KMRHLQVLQLENNP 245 (722)
T ss_pred ---hHHHHHHHHHhhh-hhhhCCH-HHh--CCceeeeecccCc-eeecch-hhh-------hhhhheeeeeccCC
Confidence 3456666666653 3322211 121 2347788886554 443221 122 36778888887744
No 83
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=63.28 E-value=1.2 Score=43.87 Aligned_cols=62 Identities=16% Similarity=0.037 Sum_probs=37.5
Q ss_pred ccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCcc
Q 011445 93 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCR 167 (485)
Q Consensus 93 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (485)
.+.++..|++|+|+.|.++.... .+. .--|+.|.++++.. +. ....++..+.|..|+++.|.
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~-~lC--~lpLkvli~sNNkl---------~~-lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPD-GLC--DLPLKVLIVSNNKL---------TS-LPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCCh-hhh--cCcceeEEEecCcc---------cc-CCcccccchhHHHhhhhhhh
Confidence 34678888889998777654322 221 23488888888532 21 12234456777777776654
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=62.14 E-value=5.3 Score=20.23 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=10.0
Q ss_pred CceEEeecceecc
Q 011445 433 GLHWLGIGQTRLA 445 (485)
Q Consensus 433 ~L~~L~l~~~~~~ 445 (485)
+|++|++++|.+.
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4778888888765
No 85
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=49.75 E-value=17 Score=19.38 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=3.1
Q ss_pred CcEEEecC
Q 011445 218 LKKFEVRS 225 (485)
Q Consensus 218 L~~L~l~~ 225 (485)
||+|.+..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 33344433
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=49.68 E-value=13 Score=19.49 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=10.0
Q ss_pred CCceEEeecceeccC
Q 011445 432 RGLHWLGIGQTRLAS 446 (485)
Q Consensus 432 ~~L~~L~l~~~~~~~ 446 (485)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 467777777777553
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=49.68 E-value=13 Score=19.49 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=10.0
Q ss_pred CCceEEeecceeccC
Q 011445 432 RGLHWLGIGQTRLAS 446 (485)
Q Consensus 432 ~~L~~L~l~~~~~~~ 446 (485)
++|+.|++++|.+..
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 467777777777553
No 88
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=46.16 E-value=50 Score=30.72 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=9.7
Q ss_pred CCCCcEEeccCCCCCCHHHHH
Q 011445 404 SKQLRRLDLCNCIGLSVDSLR 424 (485)
Q Consensus 404 ~~~L~~L~l~~c~~l~~~~~~ 424 (485)
+++|+.|.+.+ +-||..|+.
T Consensus 254 n~sl~slnves-nFItg~gi~ 273 (353)
T KOG3735|consen 254 NKSLTSLNVES-NFITGLGIM 273 (353)
T ss_pred cchhhheeccc-cccccHHHH
Confidence 45555555544 345544443
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=34.15 E-value=42 Score=17.99 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=7.7
Q ss_pred CCCCEEEcCCCCC
Q 011445 292 RKLTALNLTGADI 304 (485)
Q Consensus 292 ~~L~~L~l~~~~l 304 (485)
.+|+.|+++.|.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4566666666644
No 90
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=28.84 E-value=1.2e+02 Score=28.36 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=39.8
Q ss_pred HHHHHHcCCCCccEEEcccCCCCCHHHHHHh----hCCCCCCEEEccCCCCCcHHHh----hcccCCCCCCEEEcCCCCC
Q 011445 233 AFHDLTGVPCALVEVRLLWCRLITSETVKKL----ASSRNLEVLDLGGCKSIADTCL----RSISCLRKLTALNLTGADI 304 (485)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~l----~~l~~~~~L~~L~l~~~~l 304 (485)
.+..+-..-+.++.++++....++......+ ...+..+.+.+.+. ..++... ..+.-++.|++|++..|.|
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesnFI 267 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESNFI 267 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecccccc
Confidence 3344444455666666665555554433322 23344444444432 2222211 1223456677777777766
Q ss_pred ChHHHHHHHh
Q 011445 305 TDSGLSILAQ 314 (485)
Q Consensus 305 ~~~~~~~l~~ 314 (485)
+..++..+..
T Consensus 268 tg~gi~a~~~ 277 (353)
T KOG3735|consen 268 TGLGIMALLR 277 (353)
T ss_pred ccHHHHHHHH
Confidence 6666655544
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=20.82 E-value=49 Score=17.77 Aligned_cols=14 Identities=21% Similarity=0.359 Sum_probs=10.9
Q ss_pred CCceEEeecceecc
Q 011445 432 RGLHWLGIGQTRLA 445 (485)
Q Consensus 432 ~~L~~L~l~~~~~~ 445 (485)
++|+.|++++|++.
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 46788888888866
Done!