Query 011445
Match_columns 485
No_of_seqs 265 out of 3038
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 08:17:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 8.5E-29 2.9E-33 253.0 30.4 406 15-465 95-536 (594)
2 3ogk_B Coronatine-insensitive 100.0 5.4E-29 1.8E-33 254.4 25.3 239 208-465 285-543 (592)
3 1z7x_W Ribonuclease inhibitor; 100.0 7.7E-28 2.6E-32 238.1 27.7 413 3-464 6-459 (461)
4 3ogk_B Coronatine-insensitive 100.0 1.4E-27 4.9E-32 243.8 29.4 397 14-442 101-548 (592)
5 2p1m_B Transport inhibitor res 100.0 2.1E-27 7.1E-32 242.8 30.4 396 18-472 59-519 (594)
6 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-25 3.6E-30 222.8 31.4 373 24-446 2-412 (461)
7 3t6q_A CD180 antigen; protein- 99.9 5E-24 1.7E-28 218.1 5.7 261 188-475 299-563 (606)
8 4fmz_A Internalin; leucine ric 99.9 3.8E-22 1.3E-26 189.5 18.0 285 94-445 62-346 (347)
9 3t6q_A CD180 antigen; protein- 99.9 3.6E-24 1.2E-28 219.2 -0.2 257 189-474 277-538 (606)
10 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-23 4.5E-28 215.0 -0.5 210 240-475 348-561 (606)
11 2ast_B S-phase kinase-associat 99.9 1.2E-20 4.2E-25 178.2 19.6 279 51-361 10-306 (336)
12 4fmz_A Internalin; leucine ric 99.9 9.5E-21 3.2E-25 179.9 17.7 307 93-472 39-346 (347)
13 3rgz_A Protein brassinosteroid 99.9 2.9E-24 1E-28 225.0 -7.8 18 20-37 121-138 (768)
14 1o6v_A Internalin A; bacterial 99.9 2.8E-20 9.5E-25 183.7 20.1 342 24-446 45-389 (466)
15 3v47_A TOLL-like receptor 5B a 99.8 1.1E-22 3.9E-27 200.6 2.4 312 93-446 74-409 (455)
16 1o6v_A Internalin A; bacterial 99.8 1.8E-20 6.2E-25 185.1 18.1 319 21-415 64-385 (466)
17 3rgz_A Protein brassinosteroid 99.8 2E-23 6.7E-28 218.7 -5.7 382 22-446 148-552 (768)
18 2z81_A CD282 antigen, TOLL-lik 99.8 6.6E-21 2.3E-25 192.6 11.1 177 265-475 332-513 (549)
19 2ast_B S-phase kinase-associat 99.8 6E-19 2E-23 166.6 23.7 240 98-368 47-291 (336)
20 3v47_A TOLL-like receptor 5B a 99.8 4.3E-22 1.5E-26 196.4 1.2 339 91-475 47-411 (455)
21 2z63_A TOLL-like receptor 4, v 99.8 1.9E-22 6.4E-27 205.0 -3.5 108 20-134 47-160 (570)
22 3vq2_A TLR4, TOLL-like recepto 99.8 7.5E-22 2.6E-26 202.0 0.7 115 345-475 422-537 (606)
23 2z7x_B TOLL-like receptor 1, v 99.8 6.2E-20 2.1E-24 184.2 14.4 159 264-445 321-481 (520)
24 2ca6_A RAN GTPase-activating p 99.8 5.8E-18 2E-22 162.9 27.0 252 188-447 30-318 (386)
25 1ziw_A TOLL-like receptor 3; i 99.8 2.8E-21 9.5E-26 200.4 3.1 339 99-475 249-625 (680)
26 2z81_A CD282 antigen, TOLL-lik 99.8 2.6E-20 8.9E-25 188.2 9.6 378 25-474 26-488 (549)
27 1ziw_A TOLL-like receptor 3; i 99.8 6.5E-21 2.2E-25 197.7 4.8 65 403-474 534-599 (680)
28 2ca6_A RAN GTPase-activating p 99.8 2.5E-18 8.7E-23 165.5 21.4 139 242-384 159-314 (386)
29 2id5_A Lingo-1, leucine rich r 99.8 4.2E-21 1.5E-25 190.4 0.9 278 52-383 29-306 (477)
30 2z63_A TOLL-like receptor 4, v 99.8 1E-21 3.5E-26 199.5 -3.9 127 25-167 28-160 (570)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.7E-19 9.4E-24 181.0 13.5 159 264-445 350-510 (562)
32 4eco_A Uncharacterized protein 99.8 1.1E-20 3.6E-25 193.6 1.2 361 17-447 198-602 (636)
33 4eco_A Uncharacterized protein 99.8 2.2E-21 7.5E-26 198.6 -5.4 331 92-474 241-602 (636)
34 4ecn_A Leucine-rich repeat pro 99.8 3.7E-20 1.3E-24 193.1 3.4 361 17-448 440-843 (876)
35 2z7x_B TOLL-like receptor 1, v 99.8 2.4E-19 8.2E-24 179.8 6.9 63 405-475 421-484 (520)
36 4ecn_A Leucine-rich repeat pro 99.8 2.4E-20 8.2E-25 194.5 -0.6 328 95-474 488-842 (876)
37 2id5_A Lingo-1, leucine rich r 99.8 1.7E-20 5.8E-25 186.1 -2.0 303 97-445 31-333 (477)
38 3j0a_A TOLL-like receptor 5; m 99.8 4.6E-21 1.6E-25 202.9 -6.7 336 21-384 44-437 (844)
39 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-19 3.8E-24 192.3 2.7 36 24-65 23-58 (844)
40 3o6n_A APL1; leucine-rich repe 99.8 2.6E-19 8.8E-24 172.7 4.8 303 94-463 65-367 (390)
41 3goz_A Leucine-rich repeat-con 99.7 9.2E-17 3.1E-21 153.0 18.7 147 292-445 138-297 (362)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.9E-18 9.8E-23 173.5 7.6 388 23-475 29-513 (562)
43 3o6n_A APL1; leucine-rich repe 99.7 1.1E-17 3.8E-22 161.2 11.3 317 24-427 44-360 (390)
44 3goz_A Leucine-rich repeat-con 99.7 1.2E-16 4E-21 152.3 17.7 267 102-420 2-298 (362)
45 3bz5_A Internalin-J, INLJ; leu 99.7 2.8E-18 9.7E-23 168.1 6.5 36 404-445 317-352 (457)
46 3oja_B Anopheles plasmodium-re 99.7 1E-18 3.4E-23 177.9 2.3 290 92-445 69-358 (597)
47 3bz5_A Internalin-J, INLJ; leu 99.7 8.3E-18 2.8E-22 164.8 5.3 300 93-472 37-352 (457)
48 3oja_B Anopheles plasmodium-re 99.7 5.4E-17 1.9E-21 165.1 9.8 316 24-426 50-365 (597)
49 1xku_A Decorin; proteoglycan, 99.7 2E-17 6.9E-22 155.6 6.0 273 98-415 52-329 (330)
50 4g8a_A TOLL-like receptor 4; l 99.7 2.2E-18 7.6E-23 177.3 -1.5 84 49-133 46-134 (635)
51 2z80_A TOLL-like receptor 2, v 99.7 3E-17 1E-21 155.9 5.0 286 97-446 30-315 (353)
52 1xku_A Decorin; proteoglycan, 99.6 4.8E-17 1.6E-21 153.0 2.5 297 99-443 32-330 (330)
53 1jl5_A Outer protein YOPM; leu 99.6 1.9E-16 6.7E-21 154.9 5.6 179 97-328 110-288 (454)
54 2ft3_A Biglycan; proteoglycan, 99.6 2.3E-17 7.9E-22 155.3 -1.2 269 98-415 54-330 (332)
55 4g8a_A TOLL-like receptor 4; l 99.6 2E-17 6.8E-22 170.1 -3.3 81 77-167 55-135 (635)
56 2ft3_A Biglycan; proteoglycan, 99.6 1.3E-17 4.5E-22 157.0 -6.4 296 99-443 34-331 (332)
57 2z80_A TOLL-like receptor 2, v 99.6 7E-16 2.4E-20 146.5 5.2 141 240-386 172-314 (353)
58 3zyj_A Leucine-rich repeat-con 99.6 8E-16 2.7E-20 150.6 3.4 206 94-357 84-289 (440)
59 3zyi_A Leucine-rich repeat-con 99.6 8.3E-16 2.8E-20 151.0 3.3 108 240-358 194-301 (452)
60 1ogq_A PGIP-2, polygalacturona 99.5 1.6E-17 5.3E-22 154.9 -9.4 181 98-304 50-233 (313)
61 3o53_A Protein LRIM1, AGAP0063 99.5 1.4E-15 4.8E-20 142.0 2.8 260 99-414 11-271 (317)
62 1jl5_A Outer protein YOPM; leu 99.5 3.3E-15 1.1E-19 146.2 4.9 323 26-445 72-409 (454)
63 2z66_A Variable lymphocyte rec 99.5 6.1E-16 2.1E-20 143.8 -0.8 209 93-357 47-258 (306)
64 1ozn_A Reticulon 4 receptor; N 99.5 6.2E-16 2.1E-20 142.2 -2.0 38 345-384 199-236 (285)
65 3un9_A NLR family member X1; l 99.5 4.7E-14 1.6E-18 133.9 10.7 210 241-460 71-298 (372)
66 3un9_A NLR family member X1; l 99.5 2E-13 6.7E-18 129.6 14.1 195 215-421 71-285 (372)
67 3zyi_A Leucine-rich repeat-con 99.5 3.6E-15 1.2E-19 146.5 2.0 157 214-384 145-301 (452)
68 3zyj_A Leucine-rich repeat-con 99.5 2.9E-15 9.8E-20 146.7 0.9 134 240-385 158-291 (440)
69 2z66_A Variable lymphocyte rec 99.5 1.5E-15 5.2E-20 141.1 -1.9 108 241-357 125-233 (306)
70 3e4g_A ATP synthase subunit S, 99.5 7.1E-14 2.4E-18 115.4 7.8 92 318-422 62-156 (176)
71 1ozn_A Reticulon 4 receptor; N 99.5 5.5E-15 1.9E-19 135.9 1.1 184 241-445 55-238 (285)
72 3o53_A Protein LRIM1, AGAP0063 99.5 4E-15 1.4E-19 138.9 -0.7 241 95-383 31-272 (317)
73 1wwl_A Monocyte differentiatio 99.5 2.5E-15 8.4E-20 140.0 -2.2 207 122-361 94-309 (312)
74 3g06_A SSPH2 (leucine-rich rep 99.4 1.5E-13 5.3E-18 138.7 9.7 178 215-445 120-297 (622)
75 3e4g_A ATP synthase subunit S, 99.4 1.8E-13 6.1E-18 113.0 7.2 114 346-466 60-173 (176)
76 3g06_A SSPH2 (leucine-rich rep 99.4 9.3E-13 3.2E-17 133.0 13.5 260 26-391 41-301 (622)
77 4fcg_A Uncharacterized protein 99.4 1.5E-14 5.1E-19 135.5 -0.3 232 97-383 80-311 (328)
78 3oja_A Leucine-rich immune mol 99.4 2.6E-14 9E-19 141.2 0.1 58 97-166 33-90 (487)
79 4fcg_A Uncharacterized protein 99.4 1.3E-14 4.4E-19 135.9 -2.1 62 94-167 100-161 (328)
80 1wwl_A Monocyte differentiatio 99.4 9.7E-14 3.3E-18 129.1 3.9 258 92-384 37-307 (312)
81 1ogq_A PGIP-2, polygalacturona 99.4 2.5E-15 8.4E-20 140.0 -8.1 231 92-358 70-302 (313)
82 1h6u_A Internalin H; cell adhe 99.4 1.5E-12 5.1E-17 120.7 10.6 191 216-446 41-231 (308)
83 3oja_A Leucine-rich immune mol 99.4 8.2E-14 2.8E-18 137.7 1.1 237 122-413 33-270 (487)
84 1h6u_A Internalin H; cell adhe 99.3 2.8E-12 9.6E-17 118.9 9.4 103 95-227 38-140 (308)
85 4glp_A Monocyte differentiatio 99.3 1.1E-12 3.8E-17 121.8 5.3 186 97-305 63-264 (310)
86 4glp_A Monocyte differentiatio 99.3 1.4E-12 4.9E-17 121.1 5.0 229 190-445 64-307 (310)
87 2o6q_A Variable lymphocyte rec 99.3 4E-13 1.4E-17 122.2 0.7 162 263-445 57-218 (270)
88 2z62_A TOLL-like receptor 4, v 99.3 2.5E-13 8.5E-18 124.1 -0.9 207 216-446 28-238 (276)
89 2z62_A TOLL-like receptor 4, v 99.3 2.8E-13 9.6E-18 123.7 -1.5 83 98-200 28-110 (276)
90 3rfs_A Internalin B, repeat mo 99.3 7.5E-13 2.6E-17 120.5 1.3 175 240-445 61-235 (272)
91 4ezg_A Putative uncharacterize 99.2 6E-12 2.1E-16 108.5 5.9 151 267-445 44-194 (197)
92 3rfs_A Internalin B, repeat mo 99.2 5.1E-12 1.8E-16 115.0 3.3 179 242-446 41-219 (272)
93 4ezg_A Putative uncharacterize 99.2 3.5E-11 1.2E-15 103.7 8.1 150 215-384 43-192 (197)
94 1p9a_G Platelet glycoprotein I 99.1 1.2E-11 4.2E-16 113.4 3.6 178 94-328 6-183 (290)
95 1h6t_A Internalin B; cell adhe 99.1 7.9E-11 2.7E-15 108.1 8.7 81 215-305 45-125 (291)
96 2o6q_A Variable lymphocyte rec 99.1 6.9E-12 2.4E-16 114.0 1.1 184 267-475 37-221 (270)
97 2xwt_C Thyrotropin receptor; s 99.1 9.9E-13 3.4E-17 117.3 -5.2 179 241-443 54-237 (239)
98 2ra8_A Uncharacterized protein 99.1 8.4E-10 2.9E-14 103.7 12.2 166 263-443 168-341 (362)
99 1h6t_A Internalin B; cell adhe 99.1 3.4E-10 1.2E-14 103.8 9.3 169 95-328 43-211 (291)
100 2xwt_C Thyrotropin receptor; s 99.1 6E-12 2.1E-16 112.2 -2.9 59 98-165 31-89 (239)
101 1p9a_G Platelet glycoprotein I 99.0 2.2E-11 7.6E-16 111.7 0.6 202 213-445 7-208 (290)
102 1m9s_A Internalin B; cell inva 99.0 1.5E-10 5.2E-15 116.7 6.7 167 214-415 41-207 (605)
103 2ra8_A Uncharacterized protein 99.0 6.7E-10 2.3E-14 104.4 10.1 60 210-275 166-227 (362)
104 1io0_A Tropomodulin; LRR prote 99.0 3.7E-09 1.3E-13 89.7 13.9 124 315-445 34-164 (185)
105 3m19_A Variable lymphocyte rec 99.0 3.8E-11 1.3E-15 107.8 1.5 158 267-445 35-192 (251)
106 1m9s_A Internalin B; cell inva 99.0 5.5E-10 1.9E-14 112.6 7.6 171 95-305 40-210 (605)
107 1io0_A Tropomodulin; LRR prote 99.0 7.1E-09 2.4E-13 87.9 12.6 126 289-422 33-167 (185)
108 3m19_A Variable lymphocyte rec 98.9 1.4E-10 4.6E-15 104.2 1.5 111 264-384 56-166 (251)
109 1xeu_A Internalin C; cellular 98.9 1.4E-09 4.8E-14 98.1 5.8 148 265-446 39-186 (263)
110 2je0_A Acidic leucine-rich nuc 98.9 3E-09 1E-13 86.9 6.2 12 291-302 41-52 (149)
111 3sb4_A Hypothetical leucine ri 98.8 9.5E-10 3.2E-14 102.9 2.1 205 97-326 100-306 (329)
112 2je0_A Acidic leucine-rich nuc 98.8 1.9E-09 6.6E-14 88.0 3.7 107 264-381 39-148 (149)
113 2ell_A Acidic leucine-rich nuc 98.8 4.4E-10 1.5E-14 94.0 -0.5 135 291-446 23-161 (168)
114 4ay9_X Follicle-stimulating ho 98.8 4.3E-11 1.5E-15 113.1 -7.9 228 53-356 28-255 (350)
115 1xeu_A Internalin C; cellular 98.8 7.9E-10 2.7E-14 99.7 0.2 17 289-305 147-163 (263)
116 2o6s_A Variable lymphocyte rec 98.7 8.8E-10 3E-14 95.8 -0.9 151 267-445 28-178 (208)
117 1dce_A Protein (RAB geranylger 98.7 2.6E-10 9E-15 114.2 -5.2 123 217-354 442-567 (567)
118 3sb4_A Hypothetical leucine ri 98.7 7.2E-10 2.5E-14 103.7 -2.4 86 345-445 224-310 (329)
119 2ell_A Acidic leucine-rich nuc 98.7 6.1E-09 2.1E-13 87.0 3.0 110 264-384 46-158 (168)
120 2xot_A Amphoterin-induced prot 98.6 4.6E-09 1.6E-13 99.6 0.9 84 242-328 39-123 (361)
121 2xot_A Amphoterin-induced prot 98.6 6.1E-09 2.1E-13 98.7 0.7 166 216-391 39-207 (361)
122 3e6j_A Variable lymphocyte rec 98.6 1.3E-08 4.5E-13 89.7 2.7 156 292-468 40-197 (229)
123 2v9t_B SLIT homolog 2 protein 98.6 4.7E-09 1.6E-13 91.9 -0.4 88 345-445 78-165 (220)
124 2v70_A SLIT-2, SLIT homolog 2 98.6 6.1E-09 2.1E-13 91.2 0.3 134 293-445 33-166 (220)
125 2v9t_B SLIT homolog 2 protein 98.6 1.3E-08 4.6E-13 89.0 1.8 112 263-384 52-163 (220)
126 1pgv_A TMD-1, tropomodulin TMD 98.6 8.4E-07 2.9E-11 74.6 12.5 130 310-445 34-170 (197)
127 2o6s_A Variable lymphocyte rec 98.5 2.4E-08 8.3E-13 86.6 2.7 112 263-384 48-159 (208)
128 3e6j_A Variable lymphocyte rec 98.5 3E-08 1E-12 87.3 2.1 59 345-414 110-168 (229)
129 2v70_A SLIT-2, SLIT homolog 2 98.5 2.9E-08 9.8E-13 86.8 1.5 13 372-384 152-164 (220)
130 1a9n_A U2A', U2A'; complex (nu 98.5 6.9E-08 2.4E-12 81.2 3.7 111 93-227 14-124 (176)
131 4ay9_X Follicle-stimulating ho 98.5 1.2E-09 4.1E-14 103.1 -8.2 227 190-443 30-257 (350)
132 3cvr_A Invasion plasmid antige 98.5 2.4E-07 8.2E-12 92.4 7.7 167 97-312 79-250 (571)
133 1a9n_A U2A', U2A'; complex (nu 98.4 1.6E-07 5.4E-12 78.9 5.1 13 290-302 62-74 (176)
134 3cvr_A Invasion plasmid antige 98.4 1.1E-07 3.7E-12 94.9 3.8 52 99-167 60-111 (571)
135 1dce_A Protein (RAB geranylger 98.4 6.3E-09 2.1E-13 104.3 -5.3 124 242-380 441-567 (567)
136 1pgv_A TMD-1, tropomodulin TMD 98.4 1.7E-06 5.9E-11 72.7 9.8 131 333-472 31-170 (197)
137 4fs7_A Uncharacterized protein 98.2 7.1E-09 2.4E-13 99.5 -8.7 57 264-326 250-306 (394)
138 4fdw_A Leucine rich hypothetic 98.2 1.5E-07 5.3E-12 89.9 -0.1 61 92-164 174-234 (401)
139 1w8a_A SLIT protein; signaling 98.2 6.9E-07 2.4E-11 76.1 3.1 62 95-166 51-112 (192)
140 1ds9_A Outer arm dynein; leuci 98.2 6.7E-08 2.3E-12 83.0 -3.4 81 121-227 46-126 (198)
141 1ds9_A Outer arm dynein; leuci 98.1 1.7E-06 5.8E-11 74.1 4.4 156 22-222 15-180 (198)
142 2wfh_A SLIT homolog 2 protein 98.1 2.1E-06 7.3E-11 73.1 4.7 14 214-227 124-137 (193)
143 4fdw_A Leucine rich hypothetic 98.0 1.6E-07 5.6E-12 89.8 -3.7 104 212-327 176-281 (401)
144 4fs7_A Uncharacterized protein 98.0 1.1E-07 3.6E-12 91.3 -5.7 294 88-442 61-376 (394)
145 2wfh_A SLIT homolog 2 protein 98.0 3.7E-06 1.3E-10 71.6 4.3 38 265-303 52-89 (193)
146 2o6r_A Variable lymphocyte rec 98.0 6.8E-06 2.3E-10 68.8 5.6 37 95-132 49-85 (177)
147 2o6r_A Variable lymphocyte rec 98.0 3.5E-06 1.2E-10 70.7 3.7 39 265-304 50-88 (177)
148 1w8a_A SLIT protein; signaling 97.9 1.5E-06 5.2E-11 74.0 0.8 10 191-200 30-39 (192)
149 4gt6_A Cell surface protein; l 97.8 1.9E-06 6.5E-11 82.5 -1.8 12 121-132 85-96 (394)
150 3g39_A Variable lymphocyte rec 97.8 2.4E-05 8.2E-10 65.0 4.9 37 95-132 51-87 (170)
151 2r9u_A Variable lymphocyte rec 97.7 4.2E-05 1.4E-09 63.7 5.2 37 95-132 54-90 (174)
152 4gt6_A Cell surface protein; l 97.6 8.7E-06 3E-10 77.9 -0.2 126 262-414 260-387 (394)
153 4b8c_D Glucose-repressible alc 97.4 4.3E-05 1.5E-09 79.0 2.3 84 239-328 221-304 (727)
154 4b8c_D Glucose-repressible alc 97.4 2.5E-05 8.5E-10 80.8 -0.4 110 92-227 218-327 (727)
155 3g39_A Variable lymphocyte rec 97.3 9.4E-05 3.2E-09 61.3 2.6 9 217-225 31-39 (170)
156 2r9u_A Variable lymphocyte rec 97.3 0.00011 3.8E-09 61.2 2.6 10 217-226 34-43 (174)
157 3rw6_A Nuclear RNA export fact 97.0 0.0013 4.5E-08 58.3 7.0 116 90-225 133-260 (267)
158 3rw6_A Nuclear RNA export fact 96.7 0.003 1E-07 56.0 6.9 93 369-473 166-263 (267)
159 2ifg_A High affinity nerve gro 96.6 0.0012 4.1E-08 61.7 4.1 40 265-304 29-68 (347)
160 2ifg_A High affinity nerve gro 96.4 0.0014 4.7E-08 61.2 3.0 88 212-304 27-115 (347)
161 4h09_A Hypothetical leucine ri 90.0 0.045 1.5E-06 51.5 -0.8 82 345-441 261-342 (379)
162 4h09_A Hypothetical leucine ri 86.7 0.19 6.4E-06 47.2 1.1 128 240-382 215-342 (379)
163 3rfe_A Platelet glycoprotein I 71.8 1.4 4.8E-05 33.9 1.4 37 406-445 32-68 (130)
164 3rfe_A Platelet glycoprotein I 67.7 3.3 0.00011 31.8 2.8 34 99-133 32-65 (130)
165 2lz0_A Uncharacterized protein 21.8 38 0.0013 24.2 1.6 37 263-301 16-52 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=8.5e-29 Score=253.02 Aligned_cols=406 Identities=17% Similarity=0.142 Sum_probs=287.5
Q ss_pred hhhHHHHhhccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccc---hhHHHhh----hhccccccCCC
Q 011445 15 NNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERD---AFFLIRR----IGRNLMETVQP 87 (485)
Q Consensus 15 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~---~~~l~~~----~~~~~~~~~~~ 87 (485)
..+.++...|++|++|+++++.+ .+..+..+....+ .++.++++...... +..+... +.+.+.++...
T Consensus 95 ~~l~~l~~~~~~L~~L~L~~~~~----~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 95 PWIEAMSSSYTWLEEIRLKRMVV----TDDCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCBC----CHHHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred HHHHHHHHhCCCCCeEEeeCcEE----cHHHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence 34667778899999999997642 2223333332333 58888887653221 3333211 33333332211
Q ss_pred Ccc----ccccccCCCccEEEecccC--CChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceE
Q 011445 88 PIL----TSSYYSSFNLRSLSLVLDV--ITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGL 161 (485)
Q Consensus 88 ~~~----~~~~~~~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 161 (485)
... ......+++|++|+++.+. +....+..+...+++|++|++++| ..+.. ....+..+++|+.|
T Consensus 170 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~--------~~~~~-l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--------VPLEK-LATLLQRAPQLEEL 240 (594)
T ss_dssp CCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT--------SCHHH-HHHHHHHCTTCSEE
T ss_pred CcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC--------CcHHH-HHHHHhcCCcceEc
Confidence 100 1112356788888888654 666777777667888888888886 23332 22334577888888
Q ss_pred EeCCccccCCCccCccCcHh---HHHHhhcCCCccEE-EeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHH
Q 011445 162 SLTRCRHNHQGTFKRVNDMG---MFLLSEGCKGLESV-RLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDL 237 (485)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~---l~~l~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 237 (485)
+++.+.. .+.... +......|++|+.| .+. ......+..+...+++|+.|++++|. +++..+..+
T Consensus 241 ~l~~~~~-------~~~~~~~~~l~~~l~~~~~L~~Ls~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~ 309 (594)
T 2p1m_B 241 GTGGYTA-------EVRPDVYSGLSVALSGCKELRCLSGFW---DAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKL 309 (594)
T ss_dssp ECSBCCC-------CCCHHHHHHHHHHHHTCTTCCEEECCB---TCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHH
T ss_pred ccccccC-------ccchhhHHHHHHHHhcCCCcccccCCc---ccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHH
Confidence 8766531 122222 22223567888887 333 33444555556677999999999997 888888888
Q ss_pred HcCCCCccEEEcccCCCCCHHHHHHhh-CCCCCCEEEc--------cCCCCCcHHHhhccc-CCCCCCEEEcCCCCCChH
Q 011445 238 TGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDL--------GGCKSIADTCLRSIS-CLRKLTALNLTGADITDS 307 (485)
Q Consensus 238 ~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l--------~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~l~~~ 307 (485)
...+++|++|++.+| +++.++..+. .+++|++|++ ..+..+++.++..+. .+++|++|.+..+.+++.
T Consensus 310 ~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~ 387 (594)
T 2p1m_B 310 LCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA 387 (594)
T ss_dssp HTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHH
T ss_pred HhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHH
Confidence 888999999999987 5666666665 4899999999 345677877777665 489999998877899998
Q ss_pred HHHHHHhcCCCccEEEcc-----CCCCCC----hhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEE
Q 011445 308 GLSILAQGNLPIMNLCLR-----GCKRVT----DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDL 378 (485)
Q Consensus 308 ~~~~l~~~~~~L~~L~l~-----~~~~l~----~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 378 (485)
++..+...+++|+.|+++ +|..++ +.++..+. ..+++|+.|++++ .+++.++..+...+++|+.|
T Consensus 388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~----~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV----EHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH----HHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH----hhCCCccEEeecC--cccHHHHHHHHHhchhccEe
Confidence 888888778999999998 566777 66777766 5688999999976 78999998888778999999
Q ss_pred EecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhh
Q 011445 379 CVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNE 458 (485)
Q Consensus 379 ~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 458 (485)
++++|. +++.++..+.. ++++|++|++++|+ +++.++..+. ..+++|+.|++++|++. .+.+..+...
T Consensus 462 ~L~~~~-i~~~~~~~l~~------~~~~L~~L~L~~n~-~~~~~~~~~~-~~l~~L~~L~l~~~~~~---~~~~~~l~~~ 529 (594)
T 2p1m_B 462 SVAFAG-DSDLGMHHVLS------GCDSLRKLEIRDCP-FGDKALLANA-SKLETMRSLWMSSCSVS---FGACKLLGQK 529 (594)
T ss_dssp EEESCC-SSHHHHHHHHH------HCTTCCEEEEESCS-CCHHHHHHTG-GGGGGSSEEEEESSCCB---HHHHHHHHHH
T ss_pred eccCCC-CcHHHHHHHHh------cCCCcCEEECcCCC-CcHHHHHHHH-HhCCCCCEEeeeCCCCC---HHHHHHHHHh
Confidence 999886 89998888866 69999999999984 5888887664 46889999999999874 5667777788
Q ss_pred CCCceEe
Q 011445 459 RPWLTFC 465 (485)
Q Consensus 459 ~~~l~~~ 465 (485)
.|.+++.
T Consensus 530 lp~l~i~ 536 (594)
T 2p1m_B 530 MPKLNVE 536 (594)
T ss_dssp CTTEEEE
T ss_pred CCCCEEE
Confidence 8988753
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=5.4e-29 Score=254.37 Aligned_cols=239 Identities=16% Similarity=0.187 Sum_probs=183.9
Q ss_pred HHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhh-CCCCCCEEEccC----------
Q 011445 208 FAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGG---------- 276 (485)
Q Consensus 208 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~---------- 276 (485)
+..+...+++|+.|++++|. +++..+..+...+++|+.|++.. .+.+.++..+. .+++|++|++++
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred HHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 34445667889999998886 77777777778889999998883 35666666654 578899999984
Q ss_pred CCCCcHHHhhcc-cCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccC---CCCCCh----hhHHhHhhhcCCCCCC
Q 011445 277 CKSIADTCLRSI-SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRG---CKRVTD----KGISHLLCVGGTISQS 348 (485)
Q Consensus 277 ~~~~~~~~l~~l-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~---~~~l~~----~~~~~l~~~~~~~~~~ 348 (485)
|..+++.++..+ ..+++|++|++..+.+++..+..+...+++|+.|+++. |..+++ .++..+. ..+++
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~----~~~~~ 437 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL----IGCKK 437 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH----HHCTT
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH----HhCCC
Confidence 777887776664 35889999999777888888888887788999999873 445664 3566655 46889
Q ss_pred ccEEecCCCC-CCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhc
Q 011445 349 LTTLDLGYMP-GISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK 427 (485)
Q Consensus 349 L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~ 427 (485)
|+.|++++|. .+++.++..+...+++|+.|++++|. +++.++..+.. ++++|++|++++|+ +++.++..+.
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~------~~~~L~~L~l~~n~-l~~~~~~~~~ 509 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSR------GCPNLQKLEMRGCC-FSERAIAAAV 509 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHT------CCTTCCEEEEESCC-CBHHHHHHHH
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHh------cCcccCeeeccCCC-CcHHHHHHHH
Confidence 9999998764 37888888888778999999998885 88888887777 68999999999985 8887777664
Q ss_pred CCCCCCceEEeecceeccCCCchhHHHHhhhCCCceEe
Q 011445 428 RPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFC 465 (485)
Q Consensus 428 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 465 (485)
..+++|+.|++++|+++ ...+..+.+..|.+++.
T Consensus 510 -~~l~~L~~L~ls~n~it---~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 510 -TKLPSLRYLWVQGYRAS---MTGQDLMQMARPYWNIE 543 (592)
T ss_dssp -HHCSSCCEEEEESCBCC---TTCTTGGGGCCTTEEEE
T ss_pred -HhcCccCeeECcCCcCC---HHHHHHHHHhCCCcEEE
Confidence 46889999999999966 34455666778888753
No 3
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7.7e-28 Score=238.10 Aligned_cols=413 Identities=20% Similarity=0.249 Sum_probs=291.4
Q ss_pred ccccccCCcccchhhHHHHhhccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccch--hHHHhhhhcc
Q 011445 3 ELADKESPHLFENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDA--FFLIRRIGRN 80 (485)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~l~~~~~~~ 80 (485)
...++.+..+...+...++..+++|+.|+++++.+... ....+....... ..++.+++++....+. ..+...
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~---- 79 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-RCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQG---- 79 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH-HHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHT----
T ss_pred eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH-HHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHH----
Confidence 34456677777777888899999999999998764211 111222333323 3489999988654331 111110
Q ss_pred ccccCCCCcccccccc-CCCccEEEecccCCChHH---HHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhc----
Q 011445 81 LMETVQPPILTSSYYS-SFNLRSLSLVLDVITDEL---LITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSL---- 152 (485)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l---- 152 (485)
+.. .++|++|+++++.+++.. +......+++|++|++++| .+++.++..+
T Consensus 80 -------------l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n---------~i~~~~~~~l~~~l 137 (461)
T 1z7x_W 80 -------------LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN---------LLGDAGLQLLCEGL 137 (461)
T ss_dssp -------------TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS---------BCHHHHHHHHHHHH
T ss_pred -------------HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC---------cCchHHHHHHHHHH
Confidence 011 127999999988887643 3333356899999999994 5666665544
Q ss_pred -CCCCCcceEEeCCccccCCCccCccCcHhHH---HHhhcCCCccEEEeCCCCCCCHHHHHHHHH----hCCCCcEEEec
Q 011445 153 -GSCHHLTGLSLTRCRHNHQGTFKRVNDMGMF---LLSEGCKGLESVRLGGFSKVSDAGFAAILL----SCHSLKKFEVR 224 (485)
Q Consensus 153 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~---~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~ 224 (485)
...++|++|++++|. +++.+.. .....+++|++|+++++ .+++.+...+.. ..++|+.|+++
T Consensus 138 ~~~~~~L~~L~L~~n~---------l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 138 LDPQCRLEKLQLEYCS---------LSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp TSTTCCCCEEECTTSC---------CBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred hcCCCcceEEECCCCC---------CCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 246789999998875 5554433 33446899999999986 477766665544 34699999999
Q ss_pred CCCCCCHHH---HHHHHcCCCCccEEEcccCCCCCHHHHHHhh-----CCCCCCEEEccCCCCCcHHHhhc----ccCCC
Q 011445 225 SASFLSDLA---FHDLTGVPCALVEVRLLWCRLITSETVKKLA-----SSRNLEVLDLGGCKSIADTCLRS----ISCLR 292 (485)
Q Consensus 225 ~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~l~~----l~~~~ 292 (485)
+|. ++..+ +......+++|++|++++|. +++.++..+. .+++|++|++++| .+++.+... +..++
T Consensus 208 ~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 208 SCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp TSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCT
T ss_pred CCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCC
Confidence 985 44433 44455678999999999875 7776665543 4799999999996 777765433 34689
Q ss_pred CCCEEEcCCCCCChHHHHHHHhc----CCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHH
Q 011445 293 KLTALNLTGADITDSGLSILAQG----NLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI 368 (485)
Q Consensus 293 ~L~~L~l~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 368 (485)
+|++|++++|.+++.+...+... .++|++|++++|. +++.+...++... ..+++|+.|+++++ .+++.+...+
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l-~~~~~L~~L~Ls~n-~i~~~~~~~l 361 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVL-AQNRFLLELQISNN-RLEDAGVREL 361 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH-HHCSSCCEEECCSS-BCHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHH-hhCCCccEEEccCC-ccccccHHHH
Confidence 99999999999988877666542 3699999999987 7766544443100 24689999999997 7888877776
Q ss_pred Hhh----CCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhc---CCCCCCceEEeecc
Q 011445 369 AAA----GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK---RPSFRGLHWLGIGQ 441 (485)
Q Consensus 369 ~~~----~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~~L~~L~l~~ 441 (485)
.+. .++|++|++++|. +++.++..++.... .+++|++|++++| .+++.++..+. ....++|+.|.+.+
T Consensus 362 ~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~---~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~ 436 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLL---ANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYD 436 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHH---HCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHH---hCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecc
Confidence 653 5799999999995 89877666654333 5899999999995 89988777664 12345789998888
Q ss_pred eeccCCCchhHHHHhhhCCCceE
Q 011445 442 TRLASKGNPVITEIHNERPWLTF 464 (485)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~l~~ 464 (485)
+.......+.+..+.+.+|.+++
T Consensus 437 ~~~~~~~~~~l~~l~~~~p~l~i 459 (461)
T 1z7x_W 437 IYWSEEMEDRLQALEKDKPSLRV 459 (461)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSEE
T ss_pred cccCHHHHHHHHHHhccCCCcEe
Confidence 87665556778888899998876
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.4e-27 Score=243.80 Aligned_cols=397 Identities=17% Similarity=0.158 Sum_probs=287.1
Q ss_pred chhhHHHHhhccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHHHhh-------hhccccccCC
Q 011445 14 ENNLAIMLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRR-------IGRNLMETVQ 86 (485)
Q Consensus 14 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~-------~~~~~~~~~~ 86 (485)
...+..+...|++|++|+|+.+.+ .+..+..+....|..++.|++++........+..+ +.+.+.++..
T Consensus 101 ~~~l~~l~~~~~~L~~L~L~~~~i----~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 176 (592)
T 3ogk_B 101 TPWVTEISNNLRQLKSVHFRRMIV----SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF 176 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCBC----CHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEE
T ss_pred hHHHHHHHhhCCCCCeEEeeccEe----cHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccc
Confidence 445777888899999999997643 22233333333444588898877643222222111 3333333321
Q ss_pred CCcc----ccccccCCCccEEEecccCCC---hHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcc
Q 011445 87 PPIL----TSSYYSSFNLRSLSLVLDVIT---DELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLT 159 (485)
Q Consensus 87 ~~~~----~~~~~~~~~L~~L~L~~~~~~---~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~ 159 (485)
.... ......+++|++|+++++.++ ...+..+...+++|++|++++|. +.. ....+..+++|+
T Consensus 177 ~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~---------~~~-l~~~~~~~~~L~ 246 (592)
T 3ogk_B 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE---------ILE-LVGFFKAAANLE 246 (592)
T ss_dssp ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB---------GGG-GHHHHHHCTTCC
T ss_pred cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc---------HHH-HHHHHhhhhHHH
Confidence 0000 112355788888888876664 45666666678889999888862 221 112344556666
Q ss_pred eEEeCCccccC----------------CCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEe
Q 011445 160 GLSLTRCRHNH----------------QGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEV 223 (485)
Q Consensus 160 ~L~l~~~~~~~----------------~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 223 (485)
.|+++...... .-.+.......+..+...+++|++|++++|. +++..+..++..+++|+.|++
T Consensus 247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEE
T ss_pred hhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEec
Confidence 66664321000 0000112233344455678899999999986 888888778899999999999
Q ss_pred cCCCCCCHHHHHHHHcCCCCccEEEccc----------CCCCCHHHHHHhh-CCCCCCEEEccCCCCCcHHHhhcccC-C
Q 011445 224 RSASFLSDLAFHDLTGVPCALVEVRLLW----------CRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISC-L 291 (485)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~l~~l~~-~ 291 (485)
.+ .+.+..+..+...+++|++|++++ |..+++.++..+. .+++|++|+++ |..+++..+..++. +
T Consensus 326 ~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 326 RN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYL 402 (592)
T ss_dssp EG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHC
T ss_pred cC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhC
Confidence 94 477788888888899999999995 7788988887755 58999999994 46889888888875 9
Q ss_pred CCCCEEEcC----CCCCCh----HHHHHHHhcCCCccEEEccCCC-CCChhhHHhHhhhcCCCCCCccEEecCCCCCCCH
Q 011445 292 RKLTALNLT----GADITD----SGLSILAQGNLPIMNLCLRGCK-RVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 362 (485)
Q Consensus 292 ~~L~~L~l~----~~~l~~----~~~~~l~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~ 362 (485)
++|+.|++. .+.+++ .++..+...|++|++|+++.|. .+++.++..+. ..+++|+.|++++| .+++
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~----~~~~~L~~L~L~~n-~l~~ 477 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG----QYSPNVRWMLLGYV-GESD 477 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH----HSCTTCCEEEECSC-CSSH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH----HhCccceEeeccCC-CCCH
Confidence 999999996 446665 4677777789999999998766 47888888887 57899999999987 7999
Q ss_pred HHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecce
Q 011445 363 DGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQT 442 (485)
Q Consensus 363 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~ 442 (485)
.++..+...|++|++|++++|. +++.++..+.. .+++|+.|++++|. +++.++..+. ..+|.++...+..+
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~------~l~~L~~L~ls~n~-it~~~~~~l~-~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVT------KLPSLRYLWVQGYR-ASMTGQDLMQ-MARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHH------HCSSCCEEEEESCB-CCTTCTTGGG-GCCTTEEEEEECCC
T ss_pred HHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHH------hcCccCeeECcCCc-CCHHHHHHHH-HhCCCcEEEEecCc
Confidence 9999888899999999999998 89998888877 69999999999985 9999888886 57898888777665
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=2.1e-27 Score=242.76 Aligned_cols=396 Identities=17% Similarity=0.206 Sum_probs=289.0
Q ss_pred HHHHhhccccceeeeeecCCCc-------ccccc---cchhhhhcccccceeccccCccccchhHHHhhhhccccccCCC
Q 011445 18 AIMLTSCLQLESLSLKIRGFGV-------EVDAC---AFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQP 87 (485)
Q Consensus 18 ~~~~~~~~~L~~L~l~~~~~~~-------~~~~~---~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~ 87 (485)
..++..+++|++|+++++..-. .|+.. .+..+... ...++.+++++....+.. +
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~-~~~L~~L~L~~~~~~~~~-~-------------- 122 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS-YTWLEEIRLKRMVVTDDC-L-------------- 122 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHH-CTTCCEEEEESCBCCHHH-H--------------
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHh-CCCCCeEEeeCcEEcHHH-H--------------
Confidence 4567889999999999743101 11000 01122222 234788888775422111 1
Q ss_pred Ccccccc-ccCCCccEEEeccc-CCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhH---hhhc-CCCCCcceE
Q 011445 88 PILTSSY-YSSFNLRSLSLVLD-VITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSG---LQSL-GSCHHLTGL 161 (485)
Q Consensus 88 ~~~~~~~-~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~---~~~l-~~~~~L~~L 161 (485)
..+ ..+++|++|+++.+ .+++..+..+...+++|++|++++|. +++.+ +..+ ..+++|+.|
T Consensus 123 ----~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~---------i~~~~~~~l~~~~~~~~~L~~L 189 (594)
T 2p1m_B 123 ----ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD---------VDDVSGHWLSHFPDTYTSLVSL 189 (594)
T ss_dssp ----HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE---------EECCCGGGGGGSCTTCCCCCEE
T ss_pred ----HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc---------cCCcchHHHHHHhhcCCcCcEE
Confidence 111 24789999999855 67777788887779999999999962 33333 3333 378899999
Q ss_pred EeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCC-------------
Q 011445 162 SLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASF------------- 228 (485)
Q Consensus 162 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------- 228 (485)
++++|. ..+++..+..+...+++|+.|++++|..+ .++..++..+++|+.|.+..+..
T Consensus 190 ~l~~~~-------~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 190 NISCLA-------SEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp ECTTCC-------SCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred EecccC-------CcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 998763 23667778877778999999999987443 34777788889999998765421
Q ss_pred ---------------CCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHH-hhCCCCCCEEEccCCCCCcHHHhhccc-CC
Q 011445 229 ---------------LSDLAFHDLTGVPCALVEVRLLWCRLITSETVKK-LASSRNLEVLDLGGCKSIADTCLRSIS-CL 291 (485)
Q Consensus 229 ---------------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~l~~l~-~~ 291 (485)
.....+..+...+++|++|++++|. +++.++.. +..+++|+.|++++| +++..+..+. .+
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTC 337 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHC
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhC
Confidence 1122233333356889999999988 78777665 447899999999985 6666666554 58
Q ss_pred CCCCEEEcC---------CCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecC-----CC
Q 011445 292 RKLTALNLT---------GADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLG-----YM 357 (485)
Q Consensus 292 ~~L~~L~l~---------~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~-----~~ 357 (485)
++|++|++. .+.+++.++..+...|++|++|.+. |..+++.++..+. ..+++|+.|+++ +|
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~----~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIA----RNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHH----HHCTTCCEEEEEESSTTCC
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHH----hhCCCcceeEeecccCCCc
Confidence 999999993 2478888888888789999999665 5558888888877 568999999999 67
Q ss_pred CCCC----HHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCC
Q 011445 358 PGIS----DDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRG 433 (485)
Q Consensus 358 ~~~~----~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~ 433 (485)
+.++ +.++..+...|++|+.|++++ .+++.++..+.. .+++|+.|++++| .+++.++..+. ..|++
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~------~~~~L~~L~L~~~-~i~~~~~~~l~-~~~~~ 482 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGT------YAKKMEMLSVAFA-GDSDLGMHHVL-SGCDS 482 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHH------HCTTCCEEEEESC-CSSHHHHHHHH-HHCTT
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHH------hchhccEeeccCC-CCcHHHHHHHH-hcCCC
Confidence 7888 788888888999999999966 699999998887 6899999999997 68998888874 36899
Q ss_pred ceEEeecceeccCCCchhHHHHhhhCCCce-EeccCcccc
Q 011445 434 LHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIG 472 (485)
Q Consensus 434 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 472 (485)
|+.|++++|+++ ...+..+....+.++ +++.+|...
T Consensus 483 L~~L~L~~n~~~---~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 483 LRKLEIRDCPFG---DKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCEEEEESCSCC---HHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred cCEEECcCCCCc---HHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 999999999963 455555666667776 677788773
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.1e-25 Score=222.75 Aligned_cols=373 Identities=22% Similarity=0.264 Sum_probs=273.3
Q ss_pred ccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchh--HHHhhhhccccccCCCCccccccccCCCcc
Q 011445 24 CLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAF--FLIRRIGRNLMETVQPPILTSSYYSSFNLR 101 (485)
Q Consensus 24 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 101 (485)
.++|++|+++++.+. +..+..++...+ .++.+++++....+.. .+ ...+..+++|+
T Consensus 2 ~~~l~~L~Ls~~~l~----~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l-----------------~~~l~~~~~L~ 59 (461)
T 1z7x_W 2 SLDIQSLDIQCEELS----DARWAELLPLLQ-QCQVVRLDDCGLTEARCKDI-----------------SSALRVNPALA 59 (461)
T ss_dssp CEEEEEEEEESCCCC----HHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHH-----------------HHHHHTCTTCC
T ss_pred CccceehhhhhcccC----chhHHHHHhhcC-CccEEEccCCCCCHHHHHHH-----------------HHHHHhCCCcC
Confidence 367899999976542 222334344344 4889999887643221 11 12345689999
Q ss_pred EEEecccCCChHHHHHHHhcCC----CCcEEecCCCCCCCcccccccChhH----hhhcCCCCCcceEEeCCccccCCCc
Q 011445 102 SLSLVLDVITDELLITITASLP----FLVELDLEDRPNTEPLARLDLTSSG----LQSLGSCHHLTGLSLTRCRHNHQGT 173 (485)
Q Consensus 102 ~L~L~~~~~~~~~~~~l~~~~~----~L~~L~L~~~~~~~~~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~ 173 (485)
+|+++++.+.+..+..+.+.++ +|++|++++| .+++.+ ...+..+++|++|+++++.
T Consensus 60 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n---------~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~------ 124 (461)
T 1z7x_W 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC---------CLTGAGCGVLSSTLRTLPTLQELHLSDNL------ 124 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS---------CCBGGGHHHHHHHTTSCTTCCEEECCSSB------
T ss_pred EEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC---------CCCHHHHHHHHHHHccCCceeEEECCCCc------
Confidence 9999999998888888887777 7999999995 566544 4456899999999999875
Q ss_pred cCccCcHhHHHHhhc----CCCccEEEeCCCCCCCHHH---HHHHHHhCCCCcEEEecCCCCCCHHHHHHHHc----CCC
Q 011445 174 FKRVNDMGMFLLSEG----CKGLESVRLGGFSKVSDAG---FAAILLSCHSLKKFEVRSASFLSDLAFHDLTG----VPC 242 (485)
Q Consensus 174 ~~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~ 242 (485)
+.+.++..+... .++|++|++++| .++..+ +...+..+++|+.|+++++. +.+.....+.. ..+
T Consensus 125 ---i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~ 199 (461)
T 1z7x_W 125 ---LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPC 199 (461)
T ss_dssp ---CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCC
T ss_pred ---CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCC
Confidence 666666655443 457999999997 555543 44456678999999999986 66665555443 456
Q ss_pred CccEEEcccCCCCCHHHH----HHhhCCCCCCEEEccCCCCCcHHHhhccc-----CCCCCCEEEcCCCCCChHHHHHHH
Q 011445 243 ALVEVRLLWCRLITSETV----KKLASSRNLEVLDLGGCKSIADTCLRSIS-----CLRKLTALNLTGADITDSGLSILA 313 (485)
Q Consensus 243 ~L~~L~l~~~~~l~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~l~~l~-----~~~~L~~L~l~~~~l~~~~~~~l~ 313 (485)
+|++|++++|. +++.+. ..+..+++|++|+++++ .+++.+...+. .+++|++|++++|.+++.+...+.
T Consensus 200 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 200 QLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 99999999986 555443 34457899999999995 67776654442 589999999999999998754443
Q ss_pred ---hcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHH---HhhCCCCcEEEecCCCCCC
Q 011445 314 ---QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI---AAAGIGIIDLCVRSCFYVT 387 (485)
Q Consensus 314 ---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~l~ 387 (485)
..+++|++|+++++. +++.+...+........++|+.|++++| .+++.+...+ ...+++|++|++++| .++
T Consensus 278 ~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~ 354 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLE 354 (461)
T ss_dssp HHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCH
T ss_pred HHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccc
Confidence 358999999999986 8777766665322234579999999998 6777654333 446799999999999 599
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhc--CCCCCCceEEeecceeccC
Q 011445 388 DASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVK--RPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~--~~~~~~L~~L~l~~~~~~~ 446 (485)
+.+...+..... ..+++|++|++++| .+++.++..+. ...+++|+.|++++|++..
T Consensus 355 ~~~~~~l~~~l~--~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 355 DAGVRELCQGLG--QPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHHHHT--STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred cccHHHHHHHHc--CCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 888877775322 02679999999996 89986655443 1258999999999999774
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=5e-24 Score=218.14 Aligned_cols=261 Identities=14% Similarity=0.087 Sum_probs=149.1
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHH--HHHhhC
Q 011445 188 GCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET--VKKLAS 265 (485)
Q Consensus 188 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~l~~ 265 (485)
.+++|+.|+++++. +.... ...+..+++|+.|+++++...... .......+++|+.|+++++. +.... ...+..
T Consensus 299 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 299 GLSTLKKLVLSANK-FENLC-QISASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLRELDLSHDD-IETSDCCNLQLRN 374 (606)
T ss_dssp SCTTCCEEECTTCC-CSBGG-GGCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTT
T ss_pred ccccCCEEECccCC-cCcCc-hhhhhccCcCCEEECCCCCccccc-chhhhhccCcCCEEECCCCc-cccccCcchhccc
Confidence 34556666666542 22111 112344566666666665311000 00112345666777766654 22221 223456
Q ss_pred CCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCC
Q 011445 266 SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTI 345 (485)
Q Consensus 266 l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 345 (485)
+++|++|+++++ .+.......+..+++|++|++++|.+...........+++|+.|+++++. +.......+. .
T Consensus 375 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-----~ 447 (606)
T 3t6q_A 375 LSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFD-----G 447 (606)
T ss_dssp CTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTT-----T
T ss_pred CCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHh-----C
Confidence 677777777664 44433334455677777777777755433222222346778888888775 4332222222 5
Q ss_pred CCCccEEecCCCCCCCHHHHH--HHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHH
Q 011445 346 SQSLTTLDLGYMPGISDDGIL--TIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 423 (485)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 423 (485)
+++|++|+++++ .+++..+. .....+++|+.|++++|. ++......+. .+++|+.|++++| +++....
T Consensus 448 l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~ 517 (606)
T 3t6q_A 448 LPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFT-------SLKMMNHVDLSHN-RLTSSSI 517 (606)
T ss_dssp CTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCCGGGG
T ss_pred CCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCc-cCccChhhhc-------cccCCCEEECCCC-ccCcCCh
Confidence 778888888886 44432110 112457888888888885 4432222222 5889999999985 7877666
Q ss_pred HhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCceEeccCccccccc
Q 011445 424 RWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCHD 475 (485)
Q Consensus 424 ~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 475 (485)
..+. .+++| .|++++|.+.....+.+..+.. .-.+.+.+|++.++.
T Consensus 518 ~~l~--~l~~L-~L~L~~N~l~~~~~~~~~~l~~---L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 518 EALS--HLKGI-YLNLASNHISIILPSLLPILSQ---QRTINLRQNPLDCTC 563 (606)
T ss_dssp GGGT--TCCSC-EEECCSSCCCCCCGGGHHHHHT---SSEEECTTCCEECSG
T ss_pred hHhC--ccccc-EEECcCCcccccCHhhcccCCC---CCEEeCCCCCccccC
Confidence 6665 77888 9999999887554444443322 234788899998875
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.8e-22 Score=189.51 Aligned_cols=285 Identities=18% Similarity=0.159 Sum_probs=186.6
Q ss_pred cccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCc
Q 011445 94 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 173 (485)
Q Consensus 94 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 173 (485)
+..+++|++|+++++.+.+... ...+++|++|++++|. ++. +..+..+++|++|+++++.
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~---------i~~--~~~~~~l~~L~~L~l~~n~------ 121 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK---------ITD--ISALQNLTNLRELYLNEDN------ 121 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC---------CCC--CGGGTTCTTCSEEECTTSC------
T ss_pred hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc---------ccC--chHHcCCCcCCEEECcCCc------
Confidence 3567888888888777765433 3458888888888852 332 2347788888888888764
Q ss_pred cCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCC
Q 011445 174 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 253 (485)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 253 (485)
+.+... ...+++|+.|++++|....... . +..+++|+.|+++++....... ...+++|+.|++++|.
T Consensus 122 ---i~~~~~---~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 122 ---ISDISP---LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp ---CCCCGG---GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSC
T ss_pred ---ccCchh---hccCCceeEEECCCCCCccccc--c-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCc
Confidence 222111 3467888888888875444221 1 5567888888888875322211 4567888888888765
Q ss_pred CCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChh
Q 011445 254 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 333 (485)
Q Consensus 254 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 333 (485)
+.+. ..+..+++|+.|+++++ .+.+.. .+..+++|++|++++|.+++... ...+++|++|+++++. ++..
T Consensus 189 -l~~~--~~~~~l~~L~~L~l~~n-~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~ 258 (347)
T 4fmz_A 189 -IEDI--SPLASLTSLHYFTAYVN-QITDIT--PVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ-ISDI 258 (347)
T ss_dssp -CCCC--GGGGGCTTCCEEECCSS-CCCCCG--GGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCC
T ss_pred -cccc--ccccCCCccceeecccC-CCCCCc--hhhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCc-cCCC
Confidence 3322 22667788888888874 444322 25677888888888887665443 3457888888888875 4432
Q ss_pred hHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEecc
Q 011445 334 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 413 (485)
Q Consensus 334 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~ 413 (485)
..+ ..+++|+.|++++| .+++. . ....+++|+.|++++|. +++.....+.. +++|+.|+++
T Consensus 259 --~~~-----~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~~-------l~~L~~L~L~ 319 (347)
T 4fmz_A 259 --NAV-----KDLTKLKMLNVGSN-QISDI--S-VLNNLSQLNSLFLNNNQ-LGNEDMEVIGG-------LTNLTTLFLS 319 (347)
T ss_dssp --GGG-----TTCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC-CCGGGHHHHHT-------CTTCSEEECC
T ss_pred --hhH-----hcCCCcCEEEccCC-ccCCC--h-hhcCCCCCCEEECcCCc-CCCcChhHhhc-------cccCCEEEcc
Confidence 222 36778888888886 55543 1 23467888888888885 66655555654 8888888888
Q ss_pred CCCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 414 NCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 414 ~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
+| .++.... +. .+++|+.|++++|++.
T Consensus 320 ~n-~l~~~~~--~~--~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 320 QN-HITDIRP--LA--SLSKMDSADFANQVIK 346 (347)
T ss_dssp SS-SCCCCGG--GG--GCTTCSEESSSCC---
T ss_pred CC-ccccccC--hh--hhhccceeehhhhccc
Confidence 86 4554222 32 5778888888888754
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=3.6e-24 Score=219.19 Aligned_cols=257 Identities=17% Similarity=0.121 Sum_probs=140.2
Q ss_pred CCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCC
Q 011445 189 CKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRN 268 (485)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 268 (485)
+++|+.|+++++ .++. +...+..+++|+.|+++++. +.... ......+++|+.|+++++..........+..+++
T Consensus 277 l~~L~~L~l~~n-~l~~--lp~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSE--LPSGLVGLSTLKKLVLSANK-FENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp CTTCSEEECTTS-CCSC--CCSSCCSCTTCCEEECTTCC-CSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred ccCCCEEeccCC-ccCC--CChhhcccccCCEEECccCC-cCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 455566665554 2221 11112344566666666553 21110 1122345666666666554221111222445667
Q ss_pred CCEEEccCCCCCcHHH--hhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCC
Q 011445 269 LEVLDLGGCKSIADTC--LRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 346 (485)
Q Consensus 269 L~~L~l~~~~~~~~~~--l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 346 (485)
|++|+++++ .+.... ...+..+++|++|++++|.+.......+. .+++|++|+++++. +......... ..+
T Consensus 352 L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~~~~----~~l 424 (606)
T 3t6q_A 352 LRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTR-LKVKDAQSPF----QNL 424 (606)
T ss_dssp CCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCC-EECCTTCCTT----TTC
T ss_pred CCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCc-CCCcccchhh----hCc
Confidence 777777663 333322 23345667777777777755443222222 36777888877765 3322211112 356
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHH---HHHHhhCCCCcCCCCCcEEeccCCCCCCHHHH
Q 011445 347 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASV---EALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 423 (485)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~---~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 423 (485)
++|+.|+++++ .++......+ ..+++|++|++++|. +++..+ ..+. .+++|+.|++++| .++....
T Consensus 425 ~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~-------~l~~L~~L~Ls~n-~l~~~~~ 493 (606)
T 3t6q_A 425 HLLKVLNLSHS-LLDISSEQLF-DGLPALQHLNLQGNH-FPKGNIQKTNSLQ-------TLGRLEILVLSFC-DLSSIDQ 493 (606)
T ss_dssp TTCCEEECTTC-CCBTTCTTTT-TTCTTCCEEECTTCB-CGGGEECSSCGGG-------GCTTCCEEECTTS-CCCEECT
T ss_pred ccCCEEECCCC-ccCCcCHHHH-hCCCCCCEEECCCCC-CCccccccchhhc-------cCCCccEEECCCC-ccCccCh
Confidence 78888888886 4443222222 357889999998885 433111 1122 4889999999986 6665444
Q ss_pred HhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCceEeccCcccccc
Q 011445 424 RWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCLDGCEIGCH 474 (485)
Q Consensus 424 ~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (485)
..+. .+++|+.|++++|.+... ........+.+.+.+.+|.+...
T Consensus 494 ~~~~--~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~L~L~L~~N~l~~~ 538 (606)
T 3t6q_A 494 HAFT--SLKMMNHVDLSHNRLTSS----SIEALSHLKGIYLNLASNHISII 538 (606)
T ss_dssp TTTT--TCTTCCEEECCSSCCCGG----GGGGGTTCCSCEEECCSSCCCCC
T ss_pred hhhc--cccCCCEEECCCCccCcC----ChhHhCcccccEEECcCCccccc
Confidence 4443 688999999999986632 22233344555777777777643
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.3e-23 Score=214.98 Aligned_cols=210 Identities=14% Similarity=0.079 Sum_probs=121.3
Q ss_pred CCCCccEEEcccCCCCCHHH--HHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCC
Q 011445 240 VPCALVEVRLLWCRLITSET--VKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNL 317 (485)
Q Consensus 240 ~~~~L~~L~l~~~~~l~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 317 (485)
.+++|+.|+++++. ++... ...+..+++|++|+++++ .+.... ..+..+++|+.|++++|.+...........++
T Consensus 348 ~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 348 ALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred cCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccch-hhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 34555555555543 21110 123445666666666664 232211 34456677777777777554432211223467
Q ss_pred CccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhh
Q 011445 318 PIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARK 397 (485)
Q Consensus 318 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 397 (485)
+|+.|++++|. +.......+ ..+++|+.|+++++ .+++..+......+++|+.|++++|. ++......+.
T Consensus 425 ~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-- 494 (606)
T 3vq2_A 425 KLLYLDISYTN-TKIDFDGIF-----LGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFD-- 494 (606)
T ss_dssp TCCEEECTTSC-CEECCTTTT-----TTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT--
T ss_pred cCCEEECcCCC-CCccchhhh-----cCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChhhhc--
Confidence 88888888776 433222222 25678888888876 44432112222456888899988885 4432222222
Q ss_pred CCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCC-Cc-eEeccCccccccc
Q 011445 398 QPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERP-WL-TFCLDGCEIGCHD 475 (485)
Q Consensus 398 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~l-~~~~~~~~~~~~~ 475 (485)
.+++|+.|++++| +++......+. .+++|+.|++++|.+..... . ....| .+ .+.+.+|++.++.
T Consensus 495 -----~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~p~-~----~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 495 -----TLHRLQLLNMSHN-NLLFLDSSHYN--QLYSLSTLDCSFNRIETSKG-I----LQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp -----TCTTCCEEECCSS-CCSCEEGGGTT--TCTTCCEEECTTSCCCCEES-C----GGGSCTTCCEEECCSCCCCCSS
T ss_pred -----ccccCCEEECCCC-cCCCcCHHHcc--CCCcCCEEECCCCcCcccCH-h----HhhhcccCcEEEccCCCcccCC
Confidence 4888999999885 66664444443 67899999999998764211 1 23333 34 4788888888874
No 11
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.2e-20 Score=178.23 Aligned_cols=279 Identities=18% Similarity=0.167 Sum_probs=184.2
Q ss_pred hcccccceeccccCccccchhHHHhh-hhcccc---ccCCCCccccc-------cccC--CCccEEEecccCCChHHHHH
Q 011445 51 FFLPSTIKSLKLQPVLERDAFFLIRR-IGRNLM---ETVQPPILTSS-------YYSS--FNLRSLSLVLDVITDELLIT 117 (485)
Q Consensus 51 ~~~~~~l~~l~l~~~~~~~~~~l~~~-~~~~~~---~~~~~~~~~~~-------~~~~--~~L~~L~L~~~~~~~~~~~~ 117 (485)
..+|.++-..+|+++...++.....+ +.|+-. ...|..++... +..+ ++++.|+++.+.+......
T Consensus 10 ~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~- 88 (336)
T 2ast_B 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE- 88 (336)
T ss_dssp SSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-
T ss_pred hhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-
Confidence 34677777777777776666555544 444421 22244332221 2223 6777777776554332211
Q ss_pred HHhcCCCCcEEecCCCCCCCcccccccChhH-hhhcCCCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEE
Q 011445 118 ITASLPFLVELDLEDRPNTEPLARLDLTSSG-LQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVR 196 (485)
Q Consensus 118 l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~ 196 (485)
+ ..+++|++|++++| .++..+ ...+..+++|++|++++|. +++.....+. .+++|++|+
T Consensus 89 ~-~~~~~L~~L~L~~~---------~l~~~~~~~~~~~~~~L~~L~L~~~~---------l~~~~~~~l~-~~~~L~~L~ 148 (336)
T 2ast_B 89 H-FSPFRVQHMDLSNS---------VIEVSTLHGILSQCSKLQNLSLEGLR---------LSDPIVNTLA-KNSNLVRLN 148 (336)
T ss_dssp C-CCCBCCCEEECTTC---------EECHHHHHHHHTTBCCCSEEECTTCB---------CCHHHHHHHT-TCTTCSEEE
T ss_pred h-ccCCCCCEEEccCC---------CcCHHHHHHHHhhCCCCCEEeCcCcc---------cCHHHHHHHh-cCCCCCEEE
Confidence 2 23688888888884 466553 3345778888888887764 5555555554 478888888
Q ss_pred eCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCC-CccEEEcccCC-CCCHHHHHH-hhCCCCCCEEE
Q 011445 197 LGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPC-ALVEVRLLWCR-LITSETVKK-LASSRNLEVLD 273 (485)
Q Consensus 197 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~l~~~~~~~-l~~l~~L~~L~ 273 (485)
+++|..+++.++..++..+++|+.|++++|..+++..+......++ +|++|++++|. .+++..+.. +..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 8887677777777777888888888888885577776677677778 88888888875 466555443 34678888888
Q ss_pred ccCCCCCcHHHhhcccCCCCCCEEEcCCC-CCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEE
Q 011445 274 LGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTL 352 (485)
Q Consensus 274 l~~~~~~~~~~l~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L 352 (485)
+++|..+++..+..+..+++|++|++++| .+.+.++..+.. +++|+.|++++| +++.++..+. . .++.|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~--i~~~~~~~l~----~---~l~~L 298 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPDGTLQLLK----E---ALPHL 298 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS--SCTTCHHHHH----H---HSTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc--cCHHHHHHHH----h---hCcce
Confidence 88875577777777778888888888887 667666555544 788888888877 6776666665 2 34444
Q ss_pred ecCCCCCCC
Q 011445 353 DLGYMPGIS 361 (485)
Q Consensus 353 ~l~~~~~~~ 361 (485)
+++++ .++
T Consensus 299 ~l~~n-~l~ 306 (336)
T 2ast_B 299 QINCS-HFT 306 (336)
T ss_dssp EESCC-CSC
T ss_pred EEecc-cCc
Confidence 56553 444
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=9.5e-21 Score=179.85 Aligned_cols=307 Identities=20% Similarity=0.159 Sum_probs=220.6
Q ss_pred ccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCC
Q 011445 93 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 172 (485)
Q Consensus 93 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 172 (485)
.+..+++|++|+++++.+.+. ..+ ..+++|++|++++| .++... .+..+++|++|+++++.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~--~~~-~~~~~L~~L~l~~n---------~i~~~~--~~~~l~~L~~L~L~~n~----- 99 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI--QGI-EYLTNLEYLNLNGN---------QITDIS--PLSNLVKLTNLYIGTNK----- 99 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC--TTG-GGCTTCCEEECCSS---------CCCCCG--GGTTCTTCCEEECCSSC-----
T ss_pred cchhcccccEEEEeCCccccc--hhh-hhcCCccEEEccCC---------ccccch--hhhcCCcCCEEEccCCc-----
Confidence 345689999999998777543 223 45999999999996 343322 27889999999999875
Q ss_pred ccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccC
Q 011445 173 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC 252 (485)
Q Consensus 173 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 252 (485)
+.+. .. ...+++|++|+++++. +... .. +..+++|+.|+++++....... ....+++|+.|++++|
T Consensus 100 ----i~~~--~~-~~~l~~L~~L~l~~n~-i~~~--~~-~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 100 ----ITDI--SA-LQNLTNLRELYLNEDN-ISDI--SP-LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTES 165 (347)
T ss_dssp ----CCCC--GG-GTTCTTCSEEECTTSC-CCCC--GG-GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSS
T ss_pred ----ccCc--hH-HcCCCcCCEEECcCCc-ccCc--hh-hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCC
Confidence 2221 11 3478999999999864 3322 12 5678999999999985443221 1567899999999987
Q ss_pred CCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCCh
Q 011445 253 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD 332 (485)
Q Consensus 253 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 332 (485)
.. .... .+..+++|+.|+++++ .+.+ +..+..+++|+.|++++|.+.+... ...+++|++|++++|. ++.
T Consensus 166 ~~-~~~~--~~~~l~~L~~L~l~~n-~l~~--~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~-l~~ 235 (347)
T 4fmz_A 166 KV-KDVT--PIANLTDLYSLSLNYN-QIED--ISPLASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNK-ITD 235 (347)
T ss_dssp CC-CCCG--GGGGCTTCSEEECTTS-CCCC--CGGGGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSC-CCC
T ss_pred Cc-CCch--hhccCCCCCEEEccCC-cccc--cccccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCc-cCC
Confidence 63 3222 2778999999999986 4443 2236789999999999997776543 3458999999999987 543
Q ss_pred hhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEec
Q 011445 333 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDL 412 (485)
Q Consensus 333 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l 412 (485)
... + ..+++|+.|+++++ .+++. .. ...+++|+.|++++|. +++. ..+. .+++|+.|++
T Consensus 236 ~~~--~-----~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~n~-l~~~--~~~~-------~l~~L~~L~L 294 (347)
T 4fmz_A 236 LSP--L-----ANLSQLTWLEIGTN-QISDI--NA-VKDLTKLKMLNVGSNQ-ISDI--SVLN-------NLSQLNSLFL 294 (347)
T ss_dssp CGG--G-----TTCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSC-CCCC--GGGG-------GCTTCSEEEC
T ss_pred Ccc--h-----hcCCCCCEEECCCC-ccCCC--hh-HhcCCCcCEEEccCCc-cCCC--hhhc-------CCCCCCEEEC
Confidence 322 2 36899999999997 56553 22 3467999999999995 5543 2233 5999999999
Q ss_pred cCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-EeccCcccc
Q 011445 413 CNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIG 472 (485)
Q Consensus 413 ~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 472 (485)
++| .++......+. .+++|+.|++++|++... .. ....+.++ +++.+|.+.
T Consensus 295 ~~n-~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~--~~----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 295 NNN-QLGNEDMEVIG--GLTNLTTLFLSQNHITDI--RP----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSS-CCCGGGHHHHH--TCTTCSEEECCSSSCCCC--GG----GGGCTTCSEESSSCC---
T ss_pred cCC-cCCCcChhHhh--ccccCCEEEccCCccccc--cC----hhhhhccceeehhhhccc
Confidence 996 78877777776 789999999999997743 11 34455554 677777653
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=2.9e-24 Score=224.97 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=14.1
Q ss_pred HHhhccccceeeeeecCC
Q 011445 20 MLTSCLQLESLSLKIRGF 37 (485)
Q Consensus 20 ~~~~~~~L~~L~l~~~~~ 37 (485)
.+..|++|+.|++++|.+
T Consensus 121 ~l~~l~~L~~L~Ls~n~l 138 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTL 138 (768)
T ss_dssp GGGGCTTCCEEECCSSEE
T ss_pred HHhCCCCCCEEECcCCcc
Confidence 457789999999997654
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=2.8e-20 Score=183.74 Aligned_cols=342 Identities=21% Similarity=0.199 Sum_probs=207.9
Q ss_pred ccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHHHhh---hhccccccCCCCccccccccCCCc
Q 011445 24 CLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRR---IGRNLMETVQPPILTSSYYSSFNL 100 (485)
Q Consensus 24 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~L 100 (485)
+++|++|++..+.+.. +. .+ . ....++.+++++......+.+... +.+.+..+....+ ..+.++++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~--~~----~-~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 114 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID--GV----E-YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNL 114 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT--TG----G-GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred hccccEEecCCCCCcc-Cc--ch----h-hhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccC--hhhcCCCCC
Confidence 5677888877655322 11 11 1 123477777777655444332111 2222332222222 114556666
Q ss_pred cEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcH
Q 011445 101 RSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDM 180 (485)
Q Consensus 101 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 180 (485)
++|+++++.+.+... + ..+++|++|++++| .+.. +..+..+++|+.|++++.. ..+.
T Consensus 115 ~~L~L~~n~l~~~~~--~-~~l~~L~~L~l~~n---------~l~~--~~~~~~l~~L~~L~l~~~~-------~~~~-- 171 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP--L-KNLTNLNRLELSSN---------TISD--ISALSGLTSLQQLSFGNQV-------TDLK-- 171 (466)
T ss_dssp CEEECCSSCCCCCGG--G-TTCTTCSEEEEEEE---------EECC--CGGGTTCTTCSEEEEEESC-------CCCG--
T ss_pred CEEECCCCCCCCChH--H-cCCCCCCEEECCCC---------ccCC--ChhhccCCcccEeecCCcc-------cCch--
Confidence 666666655544321 2 34666666666663 2322 1235566677777764321 1111
Q ss_pred hHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHH
Q 011445 181 GMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETV 260 (485)
Q Consensus 181 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 260 (485)
. ...+++|+.|+++++. +... . .+..+++|+.|+++++....... ...+++|+.|++++|. +.+.
T Consensus 172 ---~-~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~-- 236 (466)
T 1o6v_A 172 ---P-LANLTTLERLDISSNK-VSDI--S-VLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LKDI-- 236 (466)
T ss_dssp ---G-GTTCTTCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCC--
T ss_pred ---h-hccCCCCCEEECcCCc-CCCC--h-hhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cccc--
Confidence 1 3367888888888864 3321 1 25667889999988875322111 3457889999998875 3332
Q ss_pred HHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhh
Q 011445 261 KKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLC 340 (485)
Q Consensus 261 ~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 340 (485)
..+..+++|+.|+++++ .+... ..+..+++|+.|++++|.+..... ...+++|+.|+++++. +.... .+.
T Consensus 237 ~~l~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~--~~~- 306 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANN-QISNL--APLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQ-LEDIS--PIS- 306 (466)
T ss_dssp GGGGGCTTCSEEECCSS-CCCCC--GGGTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC-CSCCG--GGG-
T ss_pred hhhhcCCCCCEEECCCC-ccccc--hhhhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCc-ccCch--hhc-
Confidence 34667889999999885 44332 236778899999999887765432 3358889999998876 44322 122
Q ss_pred hcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCH
Q 011445 341 VGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV 420 (485)
Q Consensus 341 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 420 (485)
.+++|+.|++++| .+++... ...+++|+.|++++|. +++. ..+. .+++|+.|++++| .+++
T Consensus 307 ----~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~l~-------~l~~L~~L~l~~n-~l~~ 367 (466)
T 1o6v_A 307 ----NLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDV--SSLA-------NLTNINWLSAGHN-QISD 367 (466)
T ss_dssp ----GCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCC--GGGT-------TCTTCCEEECCSS-CCCB
T ss_pred ----CCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCc--hhhc-------cCCCCCEEeCCCC-ccCc
Confidence 5789999999987 5554322 3468899999998885 5443 2222 4899999999986 5654
Q ss_pred HHHHhhcCCCCCCceEEeecceeccC
Q 011445 421 DSLRWVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 421 ~~~~~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
... + ..+++|+.|++++|++..
T Consensus 368 ~~~--~--~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 368 LTP--L--ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CGG--G--TTCTTCCEEECCCEEEEC
T ss_pred cch--h--hcCCCCCEEeccCCcccC
Confidence 332 3 378899999999998774
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.1e-22 Score=200.61 Aligned_cols=312 Identities=11% Similarity=0.021 Sum_probs=172.2
Q ss_pred ccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhh--cCCCCCcceEEeCCccccC
Q 011445 93 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQS--LGSCHHLTGLSLTRCRHNH 170 (485)
Q Consensus 93 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~ 170 (485)
.+.++++|++|+++++.+....+..+ ..+++|++|++++| .++...+.. +..+++|++|+++++.
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n---------~l~~~~~~~~~~~~l~~L~~L~L~~n~--- 140 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQC---------NLDGAVLSGNFFKPLTSLEMLVLRDNN--- 140 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTS---------CCBTHHHHSSTTTTCTTCCEEECCSSB---
T ss_pred cccccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCC---------CCCccccCcccccCcccCCEEECCCCc---
Confidence 34555666666666555544333233 23566666666663 333322322 5556666666665543
Q ss_pred CCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhC--CCCcEEEecCCCCCC--HH----HHHHHHcCCC
Q 011445 171 QGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSC--HSLKKFEVRSASFLS--DL----AFHDLTGVPC 242 (485)
Q Consensus 171 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~--~~----~~~~~~~~~~ 242 (485)
+.......+...+++|+.|+++++. +....... +..+ ++|+.|+++++.... .. .........+
T Consensus 141 ------l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 141 ------IKKIQPASFFLNMRRFHVLDLTFNK-VKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp ------CCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred ------cCccCcccccCCCCcccEEeCCCCc-ccccChhh-hhccccccccccccccCcccccchhhccccccccccccc
Confidence 1111111112345566666666542 11110000 1111 455666666553110 00 0000012346
Q ss_pred CccEEEcccCCCCCHHHHHHhh---CCCCCCEEEccCCCCCcH---------HHhhccc--CCCCCCEEEcCCCCCChHH
Q 011445 243 ALVEVRLLWCRLITSETVKKLA---SSRNLEVLDLGGCKSIAD---------TCLRSIS--CLRKLTALNLTGADITDSG 308 (485)
Q Consensus 243 ~L~~L~l~~~~~l~~~~~~~l~---~l~~L~~L~l~~~~~~~~---------~~l~~l~--~~~~L~~L~l~~~~l~~~~ 308 (485)
+|+.|+++++. +.......+. ..++|+.|+++++..... .....+. ..++|+.|++++|.+....
T Consensus 213 ~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 213 SITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp EEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred eeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 78888888765 5554444443 347888888876532211 0000111 3478999999998776543
Q ss_pred HHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCH
Q 011445 309 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTD 388 (485)
Q Consensus 309 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 388 (485)
...+ ..+++|+.|+++++. +.......+. .+++|+.|+++++ .++......+ ..+++|++|++++|. ++.
T Consensus 292 ~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~~-----~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~ 361 (455)
T 3v47_A 292 KSVF-SHFTDLEQLTLAQNE-INKIDDNAFW-----GLTHLLKLNLSQN-FLGSIDSRMF-ENLDKLEVLDLSYNH-IRA 361 (455)
T ss_dssp TTTT-TTCTTCCEEECTTSC-CCEECTTTTT-----TCTTCCEEECCSS-CCCEECGGGG-TTCTTCCEEECCSSC-CCE
T ss_pred hhhc-ccCCCCCEEECCCCc-ccccChhHhc-----CcccCCEEECCCC-ccCCcChhHh-cCcccCCEEECCCCc-ccc
Confidence 3333 347899999999886 5543332333 5789999999986 5654322222 457899999999885 543
Q ss_pred HHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccC
Q 011445 389 ASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
.....+. .+++|++|+++++ +++......+. .+++|+.|++++|++..
T Consensus 362 ~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 362 LGDQSFL-------GLPNLKELALDTN-QLKSVPDGIFD--RLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp ECTTTTT-------TCTTCCEEECCSS-CCSCCCTTTTT--TCTTCCEEECCSSCBCC
T ss_pred cChhhcc-------ccccccEEECCCC-ccccCCHhHhc--cCCcccEEEccCCCccc
Confidence 3222222 4899999999985 67654333333 68899999999999874
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=1.8e-20 Score=185.06 Aligned_cols=319 Identities=18% Similarity=0.182 Sum_probs=169.6
Q ss_pred HhhccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHHHhh---hhccccccCCCCccccccccC
Q 011445 21 LTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRR---IGRNLMETVQPPILTSSYYSS 97 (485)
Q Consensus 21 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~ 97 (485)
+..+++|+.|+++++.+..... + . ....++.+++++........+... +.+.+.++-...+ ..+.++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~---~----~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l 133 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP---L----K-NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNL 133 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---G----T-TCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred hhhhcCCCEEECCCCccCCchh---h----h-ccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC--hHHcCC
Confidence 3456777777777655422211 1 1 122366666666544444332222 3334443332222 225667
Q ss_pred CCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCcc
Q 011445 98 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 177 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 177 (485)
++|++|+++.+.+.+.. .+ ..+++|++|++.++ +.. +..+..+++|+.|+++++. +
T Consensus 134 ~~L~~L~l~~n~l~~~~--~~-~~l~~L~~L~l~~~----------~~~--~~~~~~l~~L~~L~l~~n~---------l 189 (466)
T 1o6v_A 134 TNLNRLELSSNTISDIS--AL-SGLTSLQQLSFGNQ----------VTD--LKPLANLTTLERLDISSNK---------V 189 (466)
T ss_dssp TTCSEEEEEEEEECCCG--GG-TTCTTCSEEEEEES----------CCC--CGGGTTCTTCCEEECCSSC---------C
T ss_pred CCCCEEECCCCccCCCh--hh-ccCCcccEeecCCc----------ccC--chhhccCCCCCEEECcCCc---------C
Confidence 77777777765554421 22 34677777777532 111 1225667777777777654 1
Q ss_pred CcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCH
Q 011445 178 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 257 (485)
Q Consensus 178 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 257 (485)
.+.. . ...+++|+.|+++++. +.... . ...+++|+.|+++++.. ... .....+++|+.|++++|.. ..
T Consensus 190 ~~~~--~-l~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~l-~~~---~~l~~l~~L~~L~l~~n~l-~~ 257 (466)
T 1o6v_A 190 SDIS--V-LAKLTNLESLIATNNQ-ISDIT--P-LGILTNLDELSLNGNQL-KDI---GTLASLTNLTDLDLANNQI-SN 257 (466)
T ss_dssp CCCG--G-GGGCTTCSEEECCSSC-CCCCG--G-GGGCTTCCEEECCSSCC-CCC---GGGGGCTTCSEEECCSSCC-CC
T ss_pred CCCh--h-hccCCCCCEEEecCCc-ccccc--c-ccccCCCCEEECCCCCc-ccc---hhhhcCCCCCEEECCCCcc-cc
Confidence 1111 1 2356777777777653 22111 1 34467777777777642 211 1234567777777776542 22
Q ss_pred HHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHh
Q 011445 258 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 337 (485)
Q Consensus 258 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 337 (485)
. ..+..+++|+.|+++++ .+... ..+..+++|+.|++++|.+.+... ...+++|+.|++++|. +.+...
T Consensus 258 ~--~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-- 326 (466)
T 1o6v_A 258 L--APLSGLTKLTELKLGAN-QISNI--SPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNN-ISDISP-- 326 (466)
T ss_dssp C--GGGTTCTTCSEEECCSS-CCCCC--GGGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSC-CSCCGG--
T ss_pred c--hhhhcCCCCCEEECCCC-ccCcc--ccccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCc-CCCchh--
Confidence 1 12556677777777764 33322 225566777777777776554322 2346777777777765 433221
Q ss_pred HhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCC
Q 011445 338 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC 415 (485)
Q Consensus 338 l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c 415 (485)
+ ..+++|+.|++++| .+++. .. ...+++|+.|++++|. +++... +. .+++|+.|++++|
T Consensus 327 ~-----~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~--~~-------~l~~L~~L~l~~n 385 (466)
T 1o6v_A 327 V-----SSLTKLQRLFFYNN-KVSDV--SS-LANLTNINWLSAGHNQ-ISDLTP--LA-------NLTRITQLGLNDQ 385 (466)
T ss_dssp G-----GGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSC-CCBCGG--GT-------TCTTCCEEECCCE
T ss_pred h-----ccCccCCEeECCCC-ccCCc--hh-hccCCCCCEEeCCCCc-cCccch--hh-------cCCCCCEEeccCC
Confidence 2 24667777777775 44432 12 2356777777777765 433221 22 4777777777765
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=2e-23 Score=218.74 Aligned_cols=382 Identities=14% Similarity=0.085 Sum_probs=194.4
Q ss_pred hhccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHH---HhhhhccccccCCCCccccccccCC
Q 011445 22 TSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFL---IRRIGRNLMETVQPPILTSSYYSSF 98 (485)
Q Consensus 22 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (485)
..+++|++|++++|.+..... ..+ .... ....++.+++++......... ..++.+.+..+-..... ..+.+++
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~-~~~-~~~~-~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~l~~l~ 223 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANV-VGW-VLSD-GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-PFLGDCS 223 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETH-HHH-HHTT-CCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCC-CBCTTCC
T ss_pred ccCCCCCEEECCCCccCCcCC-hhh-hhhc-cCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCC-cccccCC
Confidence 456777777777655321110 000 0011 123366666665433221111 11133333333312111 1267889
Q ss_pred CccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCcccc-CC-Ccc--
Q 011445 99 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHN-HQ-GTF-- 174 (485)
Q Consensus 99 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~-~~~-- 174 (485)
+|++|+++.+.+.......+. .+++|++|++++|.... ... ...+++|++|+++++... .. ..+
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~---------~~~--~~~l~~L~~L~L~~n~l~~~ip~~~~~ 291 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQFVG---------PIP--PLPLKSLQYLSLAENKFTGEIPDFLSG 291 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTT-TCSSCCEEECCSSCCEE---------SCC--CCCCTTCCEEECCSSEEEESCCCCSCT
T ss_pred CCCEEECcCCcCCCcccHHHh-cCCCCCEEECCCCcccC---------ccC--ccccCCCCEEECcCCccCCccCHHHHh
Confidence 999999998888766665554 48999999999874321 000 014455555555544210 00 000
Q ss_pred ------------CccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCC--CHHHHHHHHcC
Q 011445 175 ------------KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFL--SDLAFHDLTGV 240 (485)
Q Consensus 175 ------------~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~ 240 (485)
..+.... ......+++|+.|+++++.-..... ...+..+++|+.|+++++... ....+. ..
T Consensus 292 ~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~---~l 366 (768)
T 3rgz_A 292 ACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESLT---NL 366 (768)
T ss_dssp TCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEECCSSEEEECCCTTHH---HH
T ss_pred hcCcCCEEECcCCcCCCcc-chHHhcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEeCcCCccCccccHHHH---hh
Confidence 0011000 0111244555555555542110000 111334556666666555210 001111 11
Q ss_pred CCCccEEEcccCCCCCHHHHHHhhC--CCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCC
Q 011445 241 PCALVEVRLLWCRLITSETVKKLAS--SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLP 318 (485)
Q Consensus 241 ~~~L~~L~l~~~~~l~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 318 (485)
.++|+.|+++++. +.......+.. +++|++|+++++ .+.......+..+++|+.|++++|.+.......+. .+++
T Consensus 367 ~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~ 443 (768)
T 3rgz_A 367 SASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSK 443 (768)
T ss_dssp TTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTT
T ss_pred hcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCC
Confidence 1256666665543 11111112222 567777777774 44433344566778888888888755433222333 3788
Q ss_pred ccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhC
Q 011445 319 IMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQ 398 (485)
Q Consensus 319 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 398 (485)
|+.|+++++. +.......+. .+++|+.|+++++ .++...... ...+++|++|++++|. ++......+.
T Consensus 444 L~~L~L~~n~-l~~~~p~~~~-----~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~L~~N~-l~~~~p~~~~--- 511 (768)
T 3rgz_A 444 LRDLKLWLNM-LEGEIPQELM-----YVKTLETLILDFN-DLTGEIPSG-LSNCTNLNWISLSNNR-LTGEIPKWIG--- 511 (768)
T ss_dssp CCEEECCSSC-CCSCCCGGGG-----GCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEEECCSSC-CCSCCCGGGG---
T ss_pred CCEEECCCCc-ccCcCCHHHc-----CCCCceEEEecCC-cccCcCCHH-HhcCCCCCEEEccCCc-cCCcCChHHh---
Confidence 8888888776 4332222233 5678888888886 444321112 2467888888888886 4322222233
Q ss_pred CCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccC
Q 011445 399 PDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 399 ~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
.+++|+.|++++| .++......+. .+++|+.|++++|++..
T Consensus 512 ----~l~~L~~L~L~~N-~l~~~~p~~l~--~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 512 ----RLENLAILKLSNN-SFSGNIPAELG--DCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp ----GCTTCCEEECCSS-CCEEECCGGGG--GCTTCCEEECCSSEEES
T ss_pred ----cCCCCCEEECCCC-cccCcCCHHHc--CCCCCCEEECCCCccCC
Confidence 4888999999885 55533333333 67889999999888763
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=6.6e-21 Score=192.60 Aligned_cols=177 Identities=16% Similarity=0.114 Sum_probs=102.6
Q ss_pred CCCCCCEEEccCCCCCcHHHh---hcccCCCCCCEEEcCCCCCChHHH-HHHHhcCCCccEEEccCCCCCChhhHHhHhh
Q 011445 265 SSRNLEVLDLGGCKSIADTCL---RSISCLRKLTALNLTGADITDSGL-SILAQGNLPIMNLCLRGCKRVTDKGISHLLC 340 (485)
Q Consensus 265 ~l~~L~~L~l~~~~~~~~~~l---~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 340 (485)
.+++|++|+++++ .+.+... ..+..+++|+.|++++|.++.... ......+++|+.|+++++. ++. +....
T Consensus 332 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~- 406 (549)
T 2z81_A 332 HLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHP--MPDSC- 406 (549)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCC--CCSCC-
T ss_pred cCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-Ccc--CChhh-
Confidence 5678888888774 5554432 224567888888888887765432 2334457888888888775 431 11111
Q ss_pred hcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCH
Q 011445 341 VGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV 420 (485)
Q Consensus 341 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 420 (485)
..+++|+.|+++++ .++.... ...++|+.|++++|. ++.. .. .+++|++|++++| +++.
T Consensus 407 ---~~~~~L~~L~Ls~N-~l~~l~~----~~~~~L~~L~Ls~N~-l~~~-----~~------~l~~L~~L~Ls~N-~l~~ 465 (549)
T 2z81_A 407 ---QWPEKMRFLNLSST-GIRVVKT----CIPQTLEVLDVSNNN-LDSF-----SL------FLPRLQELYISRN-KLKT 465 (549)
T ss_dssp ---CCCTTCCEEECTTS-CCSCCCT----TSCTTCSEEECCSSC-CSCC-----CC------CCTTCCEEECCSS-CCSS
T ss_pred ---cccccccEEECCCC-Ccccccc----hhcCCceEEECCCCC-hhhh-----cc------cCChhcEEECCCC-ccCc
Confidence 24567778877775 3432100 012467777777774 4321 11 4777888888775 5552
Q ss_pred HHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-EeccCccccccc
Q 011445 421 DSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 475 (485)
Q Consensus 421 ~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~ 475 (485)
+.... .+++|+.|++++|.+.....+ .....+.++ +.+.+|++.++.
T Consensus 466 --ip~~~--~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 466 --LPDAS--LFPVLLVMKISRNQLKSVPDG----IFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp --CCCGG--GCTTCCEEECCSSCCCCCCTT----GGGGCTTCCEEECCSSCBCCCH
T ss_pred --CCCcc--cCccCCEEecCCCccCCcCHH----HHhcCcccCEEEecCCCccCCC
Confidence 22221 467788888887776643222 122344443 677777777664
No 19
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=6e-19 Score=166.63 Aligned_cols=240 Identities=17% Similarity=0.220 Sum_probs=126.7
Q ss_pred CCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCcc
Q 011445 98 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 177 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 177 (485)
..++.++++.+.+.+..+..+. .++++.|+++++ .+.... ..+..+++|++|++++|. +
T Consensus 47 ~~~~~l~l~~~~~~~~~~~~~~--~~~l~~L~l~~n---------~l~~~~-~~~~~~~~L~~L~L~~~~---------l 105 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDVTGRLL--SQGVIAFRCPRS---------FMDQPL-AEHFSPFRVQHMDLSNSV---------I 105 (336)
T ss_dssp TTSSEEECTTCBCCHHHHHHHH--HTTCSEEECTTC---------EECSCC-CSCCCCBCCCEEECTTCE---------E
T ss_pred hhheeeccccccCCHHHHHhhh--hccceEEEcCCc---------cccccc-hhhccCCCCCEEEccCCC---------c
Confidence 3578888887777654443332 278888888874 333221 123456777777777654 4
Q ss_pred CcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCH
Q 011445 178 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 257 (485)
Q Consensus 178 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 257 (485)
++..+......+++|++|++++| .+++..... +..+++|+.|++++|..+++..+......+++|++|++++|..+++
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 55545555556777777777775 455544443 3446677777777665566555555555566666666666534554
Q ss_pred HHHH-HhhCCC-CCCEEEccCCC-CCcHHHhh-cccCCCCCCEEEcCCCC-CChHHHHHHHhcCCCccEEEccCCCCCCh
Q 011445 258 ETVK-KLASSR-NLEVLDLGGCK-SIADTCLR-SISCLRKLTALNLTGAD-ITDSGLSILAQGNLPIMNLCLRGCKRVTD 332 (485)
Q Consensus 258 ~~~~-~l~~l~-~L~~L~l~~~~-~~~~~~l~-~l~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 332 (485)
.++. .+..++ +|++|++++|. .+++..+. .+..+++|++|++++|. +++..+..+.. +++|++|++++|..+.+
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCG
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCCCCCH
Confidence 4322 233455 55555555543 23332222 22344555555555553 44443333322 44555555554443444
Q ss_pred hhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHH
Q 011445 333 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTI 368 (485)
Q Consensus 333 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 368 (485)
.++..+. .+++|+.|++++| +++.++..+
T Consensus 263 ~~~~~l~-----~~~~L~~L~l~~~--i~~~~~~~l 291 (336)
T 2ast_B 263 ETLLELG-----EIPTLKTLQVFGI--VPDGTLQLL 291 (336)
T ss_dssp GGGGGGG-----GCTTCCEEECTTS--SCTTCHHHH
T ss_pred HHHHHHh-----cCCCCCEEeccCc--cCHHHHHHH
Confidence 4333333 2444444444443 444344433
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=4.3e-22 Score=196.45 Aligned_cols=339 Identities=15% Similarity=0.104 Sum_probs=190.5
Q ss_pred ccccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccC
Q 011445 91 TSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH 170 (485)
Q Consensus 91 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 170 (485)
...+.++++|++|+++.+.+...........+++|++|++++| .++......+..+++|++|++++|.
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n---------~l~~~~~~~~~~l~~L~~L~L~~n~--- 114 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN---------QFLQLETGAFNGLANLEVLTLTQCN--- 114 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC---------TTCEECTTTTTTCTTCCEEECTTSC---
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC---------ccCccChhhccCcccCCEEeCCCCC---
Confidence 3445666777777777655432111111134677777777763 3444444456666777777776654
Q ss_pred CCccCccCcHhHHH-HhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCC--HHHHHHHHcCCCCccEE
Q 011445 171 QGTFKRVNDMGMFL-LSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLS--DLAFHDLTGVPCALVEV 247 (485)
Q Consensus 171 ~~~~~~~~~~~l~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L 247 (485)
+....... ....+++|++|+++++. +.......++..+++|+.|+++++.... ...+.. -..++|+.|
T Consensus 115 ------l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~~~L~~L 185 (455)
T 3v47_A 115 ------LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN--FQGKHFTLL 185 (455)
T ss_dssp ------CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG--GTTCEEEEE
T ss_pred ------CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhc--ccccccccc
Confidence 33222211 12345677777777652 2221111224556777777777663211 111110 012466667
Q ss_pred EcccCCCCCHH--------HHHHhhCCCCCCEEEccCCCCCcHHHhhccc---CCCCCCEEEcCCCCCChHHH-------
Q 011445 248 RLLWCRLITSE--------TVKKLASSRNLEVLDLGGCKSIADTCLRSIS---CLRKLTALNLTGADITDSGL------- 309 (485)
Q Consensus 248 ~l~~~~~l~~~--------~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~l~~~~~------- 309 (485)
+++++.. ... ....+..+++|++|+++++ .+.......+. ..++|+.|+++++......+
T Consensus 186 ~l~~n~l-~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 186 RLSSITL-QDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp ECTTCBC-TTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccCcc-cccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 6666542 111 1111224567777777774 45443333332 34677777777653221100
Q ss_pred ---HHHH-hcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCC
Q 011445 310 ---SILA-QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFY 385 (485)
Q Consensus 310 ---~~l~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 385 (485)
..+. ..+++|+.|+++++. +.......+ ..+++|+.|+++++ .+++.....+ ..+++|++|++++|.
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSK-IFALLKSVF-----SHFTDLEQLTLAQN-EINKIDDNAF-WGLTHLLKLNLSQNF- 334 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSC-CCEECTTTT-----TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSC-
T ss_pred CcccccccccccCceEEEecCcc-ccccchhhc-----ccCCCCCEEECCCC-cccccChhHh-cCcccCCEEECCCCc-
Confidence 0000 023678889988876 443322222 36789999999987 5654322222 357899999999985
Q ss_pred CCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-E
Q 011445 386 VTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-F 464 (485)
Q Consensus 386 l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~ 464 (485)
++......+. .+++|++|++++| .++......+. .+++|+.|++++|.+.....+ .....+.++ +
T Consensus 335 l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L 400 (455)
T 3v47_A 335 LGSIDSRMFE-------NLDKLEVLDLSYN-HIRALGDQSFL--GLPNLKELALDTNQLKSVPDG----IFDRLTSLQKI 400 (455)
T ss_dssp CCEECGGGGT-------TCTTCCEEECCSS-CCCEECTTTTT--TCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEE
T ss_pred cCCcChhHhc-------CcccCCEEECCCC-cccccChhhcc--ccccccEEECCCCccccCCHh----HhccCCcccEE
Confidence 5443222233 4899999999995 77665444444 789999999999998753222 223455565 7
Q ss_pred eccCccccccc
Q 011445 465 CLDGCEIGCHD 475 (485)
Q Consensus 465 ~~~~~~~~~~~ 475 (485)
.+.+|++.++.
T Consensus 401 ~l~~N~l~~~~ 411 (455)
T 3v47_A 401 WLHTNPWDCSC 411 (455)
T ss_dssp ECCSSCBCCCT
T ss_pred EccCCCcccCC
Confidence 89999998885
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=1.9e-22 Score=205.00 Aligned_cols=108 Identities=19% Similarity=0.077 Sum_probs=59.9
Q ss_pred HHhhccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchh-----HHHhhhhccccccCCCCcccccc
Q 011445 20 MLTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAF-----FLIRRIGRNLMETVQPPILTSSY 94 (485)
Q Consensus 20 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~ 94 (485)
.+.+|++|++|++.+|.+.. .....|. ....++.+++++......+ .+..++.+.+.++-...+....+
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~-i~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 120 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQT-IEDGAYQ-----SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCE-ECTTTTT-----TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSC
T ss_pred HhhCCCCceEEECCCCcCCc-cCccccc-----CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccc
Confidence 34668888888888765422 2221222 1234777777766543332 11122444444443333333346
Q ss_pred ccCCCccEEEecccCCChHH-HHHHHhcCCCCcEEecCCCC
Q 011445 95 YSSFNLRSLSLVLDVITDEL-LITITASLPFLVELDLEDRP 134 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~ 134 (485)
.++++|++|+++++.+.... +..+ ..+++|++|++++|.
T Consensus 121 ~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 121 GHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNK 160 (570)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSC
T ss_pred cccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCc
Confidence 77888888888877665422 2223 347888888888764
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=7.5e-22 Score=201.98 Aligned_cols=115 Identities=17% Similarity=0.099 Sum_probs=67.5
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHH
Q 011445 345 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 424 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 424 (485)
.+++|+.|++++| .++...... ...+++|+.|++++|. +++..+ .... +.+++|+.|++++| .++.....
T Consensus 422 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~---~~~~---~~l~~L~~L~Ls~n-~l~~~~~~ 491 (606)
T 3vq2_A 422 SLEKLLYLDISYT-NTKIDFDGI-FLGLTSLNTLKMAGNS-FKDNTL---SNVF---ANTTNLTFLDLSKC-QLEQISWG 491 (606)
T ss_dssp TCTTCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTCE-EGGGEE---CSCC---TTCTTCCEEECTTS-CCCEECTT
T ss_pred ccccCCEEECcCC-CCCccchhh-hcCCCCCCEEECCCCc-CCCcch---HHhh---ccCCCCCEEECCCC-cCCccChh
Confidence 4567777777765 333211111 2356777888877774 332111 1111 15888999999886 66654434
Q ss_pred hhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-EeccCccccccc
Q 011445 425 WVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 475 (485)
Q Consensus 425 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~ 475 (485)
.+. .+++|+.|++++|.+..... ......+.++ +++.+|.+....
T Consensus 492 ~~~--~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 492 VFD--TLHRLQLLNMSHNNLLFLDS----SHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp TTT--TCTTCCEEECCSSCCSCEEG----GGTTTCTTCCEEECTTSCCCCEE
T ss_pred hhc--ccccCCEEECCCCcCCCcCH----HHccCCCcCCEEECCCCcCcccC
Confidence 443 68899999999998764211 2223345554 678888776543
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=184.15 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=99.1
Q ss_pred hCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHH-HHHHHhcCCCccEEEccCCCCCChhhHHhHhhhc
Q 011445 264 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSG-LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG 342 (485)
Q Consensus 264 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 342 (485)
..+++|++|+++++ .+++.....+..+++|++|++++|.+.... +......+++|+.|+++++. +.........
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~--- 395 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDC--- 395 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSC---
T ss_pred hhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchh---
Confidence 45678888888774 555544555677888888888888777532 22223357888888888776 4331111112
Q ss_pred CCCCCCccEEecCCCCCCCHHHHHHHHhhC-CCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHH
Q 011445 343 GTISQSLTTLDLGYMPGISDDGILTIAAAG-IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVD 421 (485)
Q Consensus 343 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~ 421 (485)
..+++|+.|+++++ .++.... ... ++|+.|++++|. ++. +..-.. .+++|++|++++| .++..
T Consensus 396 -~~l~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N~-l~~--ip~~~~------~l~~L~~L~L~~N-~l~~l 459 (520)
T 2z7x_B 396 -SWTKSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSNK-IKS--IPKQVV------KLEALQELNVASN-QLKSV 459 (520)
T ss_dssp -CCCTTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSSC-CCC--CCGGGG------GCTTCCEEECCSS-CCCCC
T ss_pred -ccCccCCEEECcCC-CCCcchh----hhhcccCCEEECCCCc-ccc--cchhhh------cCCCCCEEECCCC-cCCcc
Confidence 35678888888886 5554221 122 578888888875 441 111111 4788888888885 66642
Q ss_pred HHHhhcCCCCCCceEEeecceecc
Q 011445 422 SLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 422 ~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
....+ ..+++|+.|++++|++.
T Consensus 460 ~~~~~--~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 460 PDGIF--DRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CTTTT--TTCTTCCEEECCSSCBC
T ss_pred CHHHh--ccCCcccEEECcCCCCc
Confidence 22223 35778888888888876
No 24
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=5.8e-18 Score=162.93 Aligned_cols=252 Identities=18% Similarity=0.171 Sum_probs=153.3
Q ss_pred cCCCccEEEeCCCCCCCHHHHHHHH---HhCCCCcEEEecCCC--CCC---HHHH---HHHHcCCCCccEEEcccCCCCC
Q 011445 188 GCKGLESVRLGGFSKVSDAGFAAIL---LSCHSLKKFEVRSAS--FLS---DLAF---HDLTGVPCALVEVRLLWCRLIT 256 (485)
Q Consensus 188 ~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~--~~~---~~~~---~~~~~~~~~L~~L~l~~~~~l~ 256 (485)
.+++|+.|++++| .++..+...+. ..+++|+.|+++++. .+. ...+ ......+++|+.|+++++. ++
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FG 107 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CC
Confidence 4556666666664 44554443332 245666666666652 111 1122 2223456777777777654 44
Q ss_pred HHH----HHHhhCCCCCCEEEccCCCCCcHHHhhccc----CC---------CCCCEEEcCCCCCChHHHHHHH---hcC
Q 011445 257 SET----VKKLASSRNLEVLDLGGCKSIADTCLRSIS----CL---------RKLTALNLTGADITDSGLSILA---QGN 316 (485)
Q Consensus 257 ~~~----~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~----~~---------~~L~~L~l~~~~l~~~~~~~l~---~~~ 316 (485)
..+ ...+..+++|++|++++| .+++.....++ .+ ++|++|++++|.+++.++..+. ..+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 422 224456777777777774 45544433332 22 7888888888888766655432 257
Q ss_pred CCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHH---hhCCCCcEEEecCCCCCCHHHHHH
Q 011445 317 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIA---AAGIGIIDLCVRSCFYVTDASVEA 393 (485)
Q Consensus 317 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~ 393 (485)
++|++|++++|. +++.++..+....-..+++|+.|++++| .+++.+...+. ..+++|++|++++|. +++.+...
T Consensus 187 ~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA 263 (386)
T ss_dssp TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH
T ss_pred CCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHH
Confidence 788888888875 7766654443111135778888888886 67765554443 456888888888885 88777666
Q ss_pred HHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcC---CCCCCceEEeecceeccCC
Q 011445 394 LARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR---PSFRGLHWLGIGQTRLASK 447 (485)
Q Consensus 394 l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~~L~~L~l~~~~~~~~ 447 (485)
++..... +.+++|+.|++++| .++..++..+.. ..+|+|+.|++++|++...
T Consensus 264 l~~~l~~-~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 264 VVDAFSK-LENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHT-CSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHhh-ccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 6553210 02788888888885 777754443321 2468888888888888754
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=2.8e-21 Score=200.44 Aligned_cols=339 Identities=16% Similarity=0.063 Sum_probs=171.3
Q ss_pred CccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCC---ccC
Q 011445 99 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG---TFK 175 (485)
Q Consensus 99 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~ 175 (485)
+|++|+++.+.+.......+ ..+++|++|++++| .+.......+..+++|+.|+++++...... .++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSF-AWLPQLEYFFLEYN---------NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp CCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSC---------CBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred CCCEEECCCCCcCccCcccc-cCcccccEeeCCCC---------ccCccChhhhcCCCCccEEeccchhhhccccccccc
Confidence 38888887766654433333 34778888888774 344433444566667777776653210000 001
Q ss_pred ccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCC----CCHHHH-----------------
Q 011445 176 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASF----LSDLAF----------------- 234 (485)
Q Consensus 176 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~----------------- 234 (485)
.+.+. ....+++|+.|+++++. +.... ...+..+++|+.|+++++.. +....+
T Consensus 319 ~i~~~----~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 319 KIDDF----SFQWLKCLEHLNMEDND-IPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp EECTT----TTTTCTTCCEEECCSCC-BCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred ccChh----hcccCCCCCEEECCCCc-cCCCC-hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence 11110 11245566666666542 21110 11133445566666555420 000000
Q ss_pred -----HHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHH-
Q 011445 235 -----HDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSG- 308 (485)
Q Consensus 235 -----~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~- 308 (485)
......+++|+.|+++++..........+..+++|++|+++++ .+.......+..+++|+.|++.+|.+...+
T Consensus 393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC-SEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC-CcceeChhhhhcCcccccchhcccccccccc
Confidence 0112234455555555443111001122334555555555553 232222233345566666666665443211
Q ss_pred HHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHH-------HHhhCCCCcEEEec
Q 011445 309 LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILT-------IAAAGIGIIDLCVR 381 (485)
Q Consensus 309 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------l~~~~~~L~~L~l~ 381 (485)
.......+++|+.|+++++. ++......+ ..+++|+.|+++++ .++...... ....+++|+.|+++
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 544 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNN-IANINDDML-----EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLE 544 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECC
T ss_pred CCcccccCCCCCEEECCCCC-CCcCChhhh-----ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECC
Confidence 11112246778888887765 432222212 25678888888875 444321100 12456888888888
Q ss_pred CCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCC
Q 011445 382 SCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPW 461 (485)
Q Consensus 382 ~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 461 (485)
+|. ++......+. ++++|+.|++++ ++++......+ ..+++|+.|++++|.+......... ...+.
T Consensus 545 ~N~-l~~i~~~~~~-------~l~~L~~L~Ls~-N~l~~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~---~~~~~ 610 (680)
T 1ziw_A 545 SNG-FDEIPVEVFK-------DLFELKIIDLGL-NNLNTLPASVF--NNQVSLKSLNLQKNLITSVEKKVFG---PAFRN 610 (680)
T ss_dssp SSC-CCCCCTTTTT-------TCTTCCEEECCS-SCCCCCCTTTT--TTCTTCCEEECTTSCCCBCCHHHHH---HHHTT
T ss_pred CCC-CCCCCHHHcc-------cccCcceeECCC-CCCCcCCHhHh--CCCCCCCEEECCCCcCCccChhHhc---ccccc
Confidence 875 4421111122 588999999988 47775333333 3678999999999998754332222 12334
Q ss_pred c-eEeccCccccccc
Q 011445 462 L-TFCLDGCEIGCHD 475 (485)
Q Consensus 462 l-~~~~~~~~~~~~~ 475 (485)
+ .+.+.+|++.+++
T Consensus 611 L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 611 LTELDMRFNPFDCTC 625 (680)
T ss_dssp CSEEECTTCCCCBCC
T ss_pred cCEEEccCCCcccCC
Confidence 4 4788999999885
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=2.6e-20 Score=188.24 Aligned_cols=378 Identities=14% Similarity=0.112 Sum_probs=209.1
Q ss_pred cccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHHHhhhhccccccCCCCccccccccCCCccEEE
Q 011445 25 LQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLS 104 (485)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 104 (485)
++|++|++.++.+... ....|. ....++.+++++.... .+....+.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~-~~~~~~-----~l~~L~~L~Ls~n~i~-------------------~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI-GHGDLR-----ACANLQVLILKSSRIN-------------------TIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp TTCCEEECCSSCCCEE-CSSTTS-----SCTTCCEEECTTSCCC-------------------EECTTTTTTCTTCCEEE
T ss_pred CCccEEECcCCccCcc-Chhhhh-----cCCcccEEECCCCCcC-------------------ccChhhccccccCCEEE
Confidence 5778888877664222 111221 1233777777665432 22224457789999999
Q ss_pred ecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhH-hhhcCCCCCcceEEeCCccccCCCccCccCcHhHH
Q 011445 105 LVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSG-LQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMF 183 (485)
Q Consensus 105 L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 183 (485)
+++|.+.......+ ..+++|++|++++| .++..+ ...+..+++|++|+++++.. ...+....
T Consensus 81 Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n---------~l~~~~~~~~~~~l~~L~~L~L~~n~~-----~~~~~~~~-- 143 (549)
T 2z81_A 81 LSDNHLSSLSSSWF-GPLSSLKYLNLMGN---------PYQTLGVTSLFPNLTNLQTLRIGNVET-----FSEIRRID-- 143 (549)
T ss_dssp CTTSCCCSCCHHHH-TTCTTCCEEECTTC---------CCSSSCSSCSCTTCTTCCEEEEEESSS-----CCEECTTT--
T ss_pred CCCCccCccCHHHh-ccCCCCcEEECCCC---------cccccchhhhhhccCCccEEECCCCcc-----ccccCHhh--
Confidence 99888876655555 45899999999995 343322 23567899999999987641 11222111
Q ss_pred HHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHH---H
Q 011445 184 LLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSET---V 260 (485)
Q Consensus 184 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~ 260 (485)
...+++|++|+++++. +.... ...+..+++|+.|+++++...... ......+++|+.|+++++. +.... .
T Consensus 144 --~~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 216 (549)
T 2z81_A 144 --FAGLTSLNELEIKALS-LRNYQ-SQSLKSIRDIHHLTLHLSESAFLL--EIFADILSSVRYLELRDTN-LARFQFSPL 216 (549)
T ss_dssp --TTTCCEEEEEEEEETT-CCEEC-TTTTTTCSEEEEEEEECSBSTTHH--HHHHHSTTTBSEEEEESCB-CTTCCCCCC
T ss_pred --hhcccccCeeeccCCc-ccccC-hhhhhccccCceEecccCcccccc--hhhHhhcccccEEEccCCc-ccccccccc
Confidence 2357899999998863 33211 112456789999999987532211 2234568999999999875 33211 1
Q ss_pred HHhhCCCCCCEEEccCCCCCcHHHhhcc----cCCC--------------------------------------------
Q 011445 261 KKLASSRNLEVLDLGGCKSIADTCLRSI----SCLR-------------------------------------------- 292 (485)
Q Consensus 261 ~~l~~l~~L~~L~l~~~~~~~~~~l~~l----~~~~-------------------------------------------- 292 (485)
.....+++|+.|+++++ .+++.....+ ..++
T Consensus 217 ~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 295 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295 (549)
T ss_dssp SSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC
T ss_pred chhhhhhcccceecccc-ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccch
Confidence 11224689999999874 4544332221 1222
Q ss_pred ---------------CCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCC
Q 011445 293 ---------------KLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 357 (485)
Q Consensus 293 ---------------~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~ 357 (485)
+|+.|++++|.+.... ..+...+++|+.|+++++. +......... ....+++|+.|+++++
T Consensus 296 ~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~--~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVP-CSFSQHLKSLEFLDLSENL-MVEEYLKNSA--CKGAWPSLQTLVLSQN 371 (549)
T ss_dssp GGGSCCCCHHHHHSTTCCEEEEESSCCCCCC-HHHHHHCTTCCEEECCSSC-CCHHHHHHHT--CTTSSTTCCEEECTTS
T ss_pred hhhcccchhhhhhcccceEEEeccCccccCC-HHHHhcCccccEEEccCCc-cccccccchh--hhhccccCcEEEccCC
Confidence 3444444444332111 1222246778888887775 5543322111 0135677888888876
Q ss_pred CCCCHHHH-HHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHH------H------
Q 011445 358 PGISDDGI-LTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL------R------ 424 (485)
Q Consensus 358 ~~~~~~~~-~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~------~------ 424 (485)
.++.... ......+++|++|++++|. ++. ++.... .+++|+.|++++| .++.... .
T Consensus 372 -~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-----lp~~~~---~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~ 440 (549)
T 2z81_A 372 -HLRSMQKTGEILLTLKNLTSLDISRNT-FHP-----MPDSCQ---WPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSN 440 (549)
T ss_dssp -CCCCHHHHHHHGGGCTTCCEEECTTCC-CCC-----CCSCCC---CCTTCCEEECTTS-CCSCCCTTSCTTCSEEECCS
T ss_pred -cccccccchhhhhcCCCCCEEECCCCC-Ccc-----CChhhc---ccccccEEECCCC-CcccccchhcCCceEEECCC
Confidence 5554332 2334567778888887774 431 111111 3556666666654 3321000 0
Q ss_pred ----hhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-EeccCcccccc
Q 011445 425 ----WVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 474 (485)
Q Consensus 425 ----~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 474 (485)
.+ ...+++|+.|++++|.+..... . ...+.++ +++.+|.+...
T Consensus 441 N~l~~~-~~~l~~L~~L~Ls~N~l~~ip~-----~-~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 441 NNLDSF-SLFLPRLQELYISRNKLKTLPD-----A-SLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp SCCSCC-CCCCTTCCEEECCSSCCSSCCC-----G-GGCTTCCEEECCSSCCCCC
T ss_pred CChhhh-cccCChhcEEECCCCccCcCCC-----c-ccCccCCEEecCCCccCCc
Confidence 00 0246677777777777653211 1 1244444 56666665543
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=6.5e-21 Score=197.67 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=33.5
Q ss_pred CCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-EeccCcccccc
Q 011445 403 KSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCH 474 (485)
Q Consensus 403 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ 474 (485)
++++|+.|+++++ +++......+ ..+++|+.|++++|.+..... ......+.++ +.+.+|.+...
T Consensus 534 ~l~~L~~L~L~~N-~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 534 GLSHLHILNLESN-GFDEIPVEVF--KDLFELKIIDLGLNNLNTLPA----SVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECTTSCCCBC
T ss_pred CCCCCCEEECCCC-CCCCCCHHHc--ccccCcceeECCCCCCCcCCH----hHhCCCCCCCEEECCCCcCCcc
Confidence 4666666666663 4543222222 256677777777776553211 1122334444 56666655544
No 28
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=2.5e-18 Score=165.48 Aligned_cols=139 Identities=20% Similarity=0.204 Sum_probs=70.9
Q ss_pred CCccEEEcccCCCCCHHHHH----HhhCCCCCCEEEccCCCCCcHHH----hh-cccCCCCCCEEEcCCCCCChHHHHHH
Q 011445 242 CALVEVRLLWCRLITSETVK----KLASSRNLEVLDLGGCKSIADTC----LR-SISCLRKLTALNLTGADITDSGLSIL 312 (485)
Q Consensus 242 ~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~----l~-~l~~~~~L~~L~l~~~~l~~~~~~~l 312 (485)
++|+.|++++|. +++.++. .+..+++|++|+++++ .+++.+ .. .+..+++|+.|++++|.+++.+...+
T Consensus 159 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 555555555543 3322222 2334556666666653 444332 12 33456666666666666655443332
Q ss_pred ---HhcCCCccEEEccCCCCCChhhHHhHhhhcC-CCCCCccEEecCCCCCCCHHHHHHHH----hhCCCCcEEEecCCC
Q 011445 313 ---AQGNLPIMNLCLRGCKRVTDKGISHLLCVGG-TISQSLTTLDLGYMPGISDDGILTIA----AAGIGIIDLCVRSCF 384 (485)
Q Consensus 313 ---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~ 384 (485)
...+++|++|++++|. +++.+...++.... ..+++|+.|++++| .+++.++..+. ..+++|+.|++++|.
T Consensus 237 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 2345666666666665 55554443331100 12566777777665 56654333332 335677777776665
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=4.2e-21 Score=190.42 Aligned_cols=278 Identities=15% Similarity=0.085 Sum_probs=134.2
Q ss_pred cccccceeccccCccccchhHHHhhhhccccccCCCCccccccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecC
Q 011445 52 FLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLE 131 (485)
Q Consensus 52 ~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 131 (485)
.+|..++.+++++.....+ ....|.++++|++|+|+.+.+.......+ ..+++|++|+|+
T Consensus 29 ~~~~~l~~L~L~~n~l~~~-------------------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~ 88 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTL-------------------NQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLR 88 (477)
T ss_dssp CCCTTCSEEECCSSCCCEE-------------------CTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECC
T ss_pred CCCCCCcEEECCCCccceE-------------------CHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECC
Confidence 3555677777766543221 12334667778888887776655433334 347778888887
Q ss_pred CCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHH
Q 011445 132 DRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAI 211 (485)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 211 (485)
+| .++......+..+++|+.|+++++.. ..+... ....+++|+.|+++++ .+...... .
T Consensus 89 ~n---------~l~~~~~~~~~~l~~L~~L~Ls~n~i------~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~-~ 147 (477)
T 2id5_A 89 SN---------RLKLIPLGVFTGLSNLTKLDISENKI------VILLDY----MFQDLYNLKSLEVGDN-DLVYISHR-A 147 (477)
T ss_dssp SS---------CCCSCCTTSSTTCTTCCEEECTTSCC------CEECTT----TTTTCTTCCEEEECCT-TCCEECTT-S
T ss_pred CC---------cCCccCcccccCCCCCCEEECCCCcc------ccCChh----HccccccCCEEECCCC-ccceeChh-h
Confidence 74 34443334456777777777776531 111111 1235667777777764 22211111 1
Q ss_pred HHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCC
Q 011445 212 LLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCL 291 (485)
Q Consensus 212 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~ 291 (485)
+..+++|+.|+++++. +.... ......+++|+.|+++++. +.......+..+++|+.|+++++...... .......
T Consensus 148 ~~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~ 223 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCN-LTSIP-TEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTM-TPNCLYG 223 (477)
T ss_dssp STTCTTCCEEEEESCC-CSSCC-HHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEE-CTTTTTT
T ss_pred ccCCCCCCEEECCCCc-CcccC-hhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCcccccc-CcccccC
Confidence 3345666777766663 21111 1123345666666666543 22222223445566666666554322211 1111223
Q ss_pred CCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 011445 292 RKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA 371 (485)
Q Consensus 292 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 371 (485)
.+|+.|++++|.++......+. .+++|+.|+++++. +.......+ ..+++|+.|+++++ .++......+ ..
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~~~-~~ 294 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVR-HLVYLRFLNLSYNP-ISTIEGSML-----HELLRLQEIQLVGG-QLAVVEPYAF-RG 294 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHT-TCTTCCEEECCSSC-CCEECTTSC-----TTCTTCCEEECCSS-CCSEECTTTB-TT
T ss_pred ccccEEECcCCcccccCHHHhc-CccccCeeECCCCc-CCccChhhc-----cccccCCEEECCCC-ccceECHHHh-cC
Confidence 3566666666555433322222 35566666665554 332221111 13455555555553 3332111111 23
Q ss_pred CCCCcEEEecCC
Q 011445 372 GIGIIDLCVRSC 383 (485)
Q Consensus 372 ~~~L~~L~l~~~ 383 (485)
+++|+.|++++|
T Consensus 295 l~~L~~L~L~~N 306 (477)
T 2id5_A 295 LNYLRVLNVSGN 306 (477)
T ss_dssp CTTCCEEECCSS
T ss_pred cccCCEEECCCC
Confidence 455555555554
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=1e-21 Score=199.51 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=76.5
Q ss_pred cccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhH-----HHhhhhccccccCCCCccccccccCCC
Q 011445 25 LQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFF-----LIRRIGRNLMETVQPPILTSSYYSSFN 99 (485)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (485)
++++.|+++++.+. ......|.. ...++.+++++.....+.. +..++.+.+.++-...+....+..+++
T Consensus 28 ~~l~~L~Ls~n~l~-~~~~~~~~~-----l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNPLR-HLGSYSFFS-----FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTT-----CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccCCccC-ccChhHhhC-----CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 47999999987752 222222322 2348889988765444321 112255555555434444456677888
Q ss_pred ccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccCh-hHhhhcCCCCCcceEEeCCcc
Q 011445 100 LRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTS-SGLQSLGSCHHLTGLSLTRCR 167 (485)
Q Consensus 100 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 167 (485)
|++|+++.+.+.......+ ..+++|++|++++| .++. .....+..+++|++|+++++.
T Consensus 102 L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n---------~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPI-GHLKTLKELNVAHN---------LIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCEEECTTSCCCCSTTCSC-TTCTTCCEEECCSS---------CCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred cccccccccccccCCCccc-cccccccEEecCCC---------ccceecChhhhcccCCCCEEeCcCCc
Confidence 8888888776654322123 34788888888885 3332 123446678888888887764
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=2.7e-19 Score=181.00 Aligned_cols=159 Identities=11% Similarity=0.134 Sum_probs=84.2
Q ss_pred hCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHH-HHHHHhcCCCccEEEccCCCCCChhhHHhHhhhc
Q 011445 264 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSG-LSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG 342 (485)
Q Consensus 264 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 342 (485)
..+++|++|+++++ .+++.....+..+++|+.|++++|.+.... +......+++|+.|+++++. +.........
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~--- 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTC--- 424 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCC---
T ss_pred cCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhh---
Confidence 34566777777663 444434445556677777777776665421 12222346677777777665 3321111111
Q ss_pred CCCCCCccEEecCCCCCCCHHHHHHHHhhC-CCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHH
Q 011445 343 GTISQSLTTLDLGYMPGISDDGILTIAAAG-IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVD 421 (485)
Q Consensus 343 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~ 421 (485)
..+++|+.|+++++ .+++.. ...+ ++|+.|++++|. ++. ++.... .+++|+.|+++++ +++..
T Consensus 425 -~~l~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N~-l~~-----ip~~~~---~l~~L~~L~L~~N-~l~~l 488 (562)
T 3a79_B 425 -AWAESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNNR-IMS-----IPKDVT---HLQALQELNVASN-QLKSV 488 (562)
T ss_dssp -CCCTTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSSC-CCC-----CCTTTT---SSCCCSEEECCSS-CCCCC
T ss_pred -cCcccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCCc-Ccc-----cChhhc---CCCCCCEEECCCC-CCCCC
Confidence 24567777777765 454321 1122 467777777664 431 111111 4677777777773 55532
Q ss_pred HHHhhcCCCCCCceEEeecceecc
Q 011445 422 SLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 422 ~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
....+ ..+++|+.|++++|++.
T Consensus 489 ~~~~~--~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 489 PDGVF--DRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTST--TTCTTCCCEECCSCCBC
T ss_pred CHHHH--hcCCCCCEEEecCCCcC
Confidence 21112 25667777777777765
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=1.1e-20 Score=193.59 Aligned_cols=361 Identities=14% Similarity=0.093 Sum_probs=222.0
Q ss_pred hHHHHhhccccceeeeeecCCCcc-----ccccc-------chhhhh--cccccceeccccCccccchhHHHhhhhcccc
Q 011445 17 LAIMLTSCLQLESLSLKIRGFGVE-----VDACA-------FQSIIF--FLPSTIKSLKLQPVLERDAFFLIRRIGRNLM 82 (485)
Q Consensus 17 l~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~-------~~~~~~--~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~ 82 (485)
+...+..+++|+.|+|.+|.+... |.... +...+. .+ ..++.+++++... .
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l--------------~ 262 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPN--------------L 262 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTT--------------C
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcC--------------C
Confidence 666678899999999998776331 11100 000000 11 2366666665431 1
Q ss_pred ccCCCCccccccccCCCccEEEecccC-CCh-HHHHHHHh-----cCCCCcEEecCCCCCCCcccccccChhHhh--hcC
Q 011445 83 ETVQPPILTSSYYSSFNLRSLSLVLDV-ITD-ELLITITA-----SLPFLVELDLEDRPNTEPLARLDLTSSGLQ--SLG 153 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~-~~~~~l~~-----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~--~l~ 153 (485)
+ .-+..+.++++|++|+++.|. ++. ..+..+.. .+++|++|++++| .++ .... .+.
T Consensus 263 ~-----~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n---------~l~-~ip~~~~l~ 327 (636)
T 4eco_A 263 T-----KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN---------NLK-TFPVETSLQ 327 (636)
T ss_dssp S-----SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS---------CCS-SCCCHHHHT
T ss_pred c-----cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC---------cCC-ccCchhhhc
Confidence 1 112445789999999999887 776 55555543 2499999999995 444 2222 578
Q ss_pred CCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCC-CcEEEecCCCCCCHH
Q 011445 154 SCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHS-LKKFEVRSASFLSDL 232 (485)
Q Consensus 154 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 232 (485)
.+++|+.|+++++. +... +. ....+++|+.|+++++. +. .+...+..+++ |+.|+++++. +.
T Consensus 328 ~l~~L~~L~L~~N~---------l~g~-ip-~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~-l~-- 390 (636)
T 4eco_A 328 KMKKLGMLECLYNQ---------LEGK-LP-AFGSEIKLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNK-LK-- 390 (636)
T ss_dssp TCTTCCEEECCSCC---------CEEE-CC-CCEEEEEESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSC-CS--
T ss_pred cCCCCCEEeCcCCc---------Cccc-hh-hhCCCCCCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCc-Cc--
Confidence 89999999998865 2211 01 12356789999999863 33 22222455677 9999999985 33
Q ss_pred HHHHHHcC--CCCccEEEcccCCCCCHHHHHHhh-------CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCC
Q 011445 233 AFHDLTGV--PCALVEVRLLWCRLITSETVKKLA-------SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGAD 303 (485)
Q Consensus 233 ~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 303 (485)
.++..... +++|+.|+++++. +.......+. .+++|+.|+++++ .++......+..+++|++|++++|.
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred ccchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC
Confidence 22222222 3489999999875 4333223344 5679999999985 5553222334568999999999987
Q ss_pred CChHHHHHHHh------cCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcE
Q 011445 304 ITDSGLSILAQ------GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIID 377 (485)
Q Consensus 304 l~~~~~~~l~~------~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 377 (485)
++......+.. .+++|+.|+++++. ++. +.... ....+++|+.|+++++ .++. +..-...+++|+.
T Consensus 469 l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~--~~~~l~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~ 540 (636)
T 4eco_A 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTK--LSDDF--RATTLPYLVGIDLSYN-SFSK--FPTQPLNSSTLKG 540 (636)
T ss_dssp CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCB--CCGGG--STTTCTTCCEEECCSS-CCSS--CCCGGGGCSSCCE
T ss_pred CCCcCHHHhccccccccccCCccEEECcCCc-CCc--cChhh--hhccCCCcCEEECCCC-CCCC--cChhhhcCCCCCE
Confidence 66321111110 12289999999886 542 21111 0026789999999996 5654 2222246899999
Q ss_pred EEecCCC-----CCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCC
Q 011445 378 LCVRSCF-----YVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK 447 (485)
Q Consensus 378 L~l~~~~-----~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~ 447 (485)
|++++|. .+.......+. .+++|+.|++++| .++.. ....+++|+.|++++|++...
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~-------~l~~L~~L~Ls~N-~l~~i-----p~~~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGIT-------LCPSLTQLQIGSN-DIRKV-----NEKITPNISVLDIKDNPNISI 602 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGG-------GCSSCCEEECCSS-CCCBC-----CSCCCTTCCEEECCSCTTCEE
T ss_pred EECCCCcccccCcccccChHHHh-------cCCCCCEEECCCC-cCCcc-----CHhHhCcCCEEECcCCCCccc
Confidence 9996543 12211112222 4899999999996 55432 112347999999999987754
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=2.2e-21 Score=198.65 Aligned_cols=331 Identities=10% Similarity=0.016 Sum_probs=212.6
Q ss_pred cccc--cCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccCh-hHhhhcC------CCCCcceEE
Q 011445 92 SSYY--SSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTS-SGLQSLG------SCHHLTGLS 162 (485)
Q Consensus 92 ~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~-~~~~~l~------~~~~L~~L~ 162 (485)
..+. ++++|++|+++.|.+....+..+. .+++|++|++++| ..++. .....+. .+++|++|+
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n--------~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACN--------RGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTC--------TTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCC--------CCCccccchHHHHhhhccccCCCCCEEE
Confidence 4445 899999999998876554444453 4899999999996 22554 3334443 459999999
Q ss_pred eCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCCCCCC-HHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCC
Q 011445 163 LTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVS-DAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVP 241 (485)
Q Consensus 163 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 241 (485)
++++. +..++. ......+++|+.|+++++. +. .. . .+..+++|+.|+++++. +. .+......+
T Consensus 312 L~~n~------l~~ip~---~~~l~~l~~L~~L~L~~N~-l~g~i--p-~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l 375 (636)
T 4eco_A 312 IGYNN------LKTFPV---ETSLQKMKKLGMLECLYNQ-LEGKL--P-AFGSEIKLASLNLAYNQ-IT--EIPANFCGF 375 (636)
T ss_dssp CCSSC------CSSCCC---HHHHTTCTTCCEEECCSCC-CEEEC--C-CCEEEEEESEEECCSSE-EE--ECCTTSEEE
T ss_pred CCCCc------CCccCc---hhhhccCCCCCEEeCcCCc-Cccch--h-hhCCCCCCCEEECCCCc-cc--cccHhhhhh
Confidence 99875 122322 0123478999999999863 22 11 1 24566899999999985 22 222224456
Q ss_pred CC-ccEEEcccCCCCCHHHHHHhhC--CCCCCEEEccCCCCCcHHHhhccc-------CCCCCCEEEcCCCCCChHHHHH
Q 011445 242 CA-LVEVRLLWCRLITSETVKKLAS--SRNLEVLDLGGCKSIADTCLRSIS-------CLRKLTALNLTGADITDSGLSI 311 (485)
Q Consensus 242 ~~-L~~L~l~~~~~l~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~l~-------~~~~L~~L~l~~~~l~~~~~~~ 311 (485)
++ |+.|+++++. ++.. ...+.. +++|+.|+++++ .+.......+. .+++|+.|++++|.++... ..
T Consensus 376 ~~~L~~L~Ls~N~-l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~ 451 (636)
T 4eco_A 376 TEQVENLSFAHNK-LKYI-PNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP-KE 451 (636)
T ss_dssp CTTCCEEECCSSC-CSSC-CSCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC-TH
T ss_pred cccCcEEEccCCc-Cccc-chhhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcCC-HH
Confidence 77 9999999876 4321 112233 458999999985 56554444444 6789999999999777432 23
Q ss_pred HHhcCCCccEEEccCCCCCChhhHHhHhhhc---CCCCCCccEEecCCCCCCCHHHHHHHH--hhCCCCcEEEecCCCCC
Q 011445 312 LAQGNLPIMNLCLRGCKRVTDKGISHLLCVG---GTISQSLTTLDLGYMPGISDDGILTIA--AAGIGIIDLCVRSCFYV 386 (485)
Q Consensus 312 l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~~l 386 (485)
+...+++|+.|+++++. ++......+. .. ...+++|+.|+++++ .++. +.... ..+++|+.|++++|. +
T Consensus 452 ~~~~l~~L~~L~Ls~N~-l~~i~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~~~l~~L~~L~Ls~N~-l 525 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNM-LTEIPKNSLK-DENENFKNTYLLTSIDLRFN-KLTK--LSDDFRATTLPYLVGIDLSYNS-F 525 (636)
T ss_dssp HHHTTCCCSEEECCSSC-CSBCCSSSSE-ETTEECTTGGGCCEEECCSS-CCCB--CCGGGSTTTCTTCCEEECCSSC-C
T ss_pred HHccCCCCCEEECCCCC-CCCcCHHHhc-cccccccccCCccEEECcCC-cCCc--cChhhhhccCCCcCEEECCCCC-C
Confidence 34458999999999886 5421111111 00 011239999999997 6663 22222 267999999999996 5
Q ss_pred CHHHHHHHHhhCCCCcCCCCCcEEeccCCC-----CCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCC
Q 011445 387 TDASVEALARKQPDQEKSKQLRRLDLCNCI-----GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPW 461 (485)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~-----~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 461 (485)
+. ....+. .+++|+.|+++++. ++.......+. .+++|+.|++++|.+...... + . +.
T Consensus 526 ~~-ip~~~~-------~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~ip~~-~---~---~~ 588 (636)
T 4eco_A 526 SK-FPTQPL-------NSSTLKGFGIRNQRDAQGNRTLREWPEGIT--LCPSLTQLQIGSNDIRKVNEK-I---T---PN 588 (636)
T ss_dssp SS-CCCGGG-------GCSSCCEEECCSCBCTTCCBCCCCCCTTGG--GCSSCCEEECCSSCCCBCCSC-C---C---TT
T ss_pred CC-cChhhh-------cCCCCCEEECCCCcccccCcccccChHHHh--cCCCCCEEECCCCcCCccCHh-H---h---Cc
Confidence 43 111222 59999999996532 33322222333 588999999999998643222 1 1 45
Q ss_pred ce-EeccCcccccc
Q 011445 462 LT-FCLDGCEIGCH 474 (485)
Q Consensus 462 l~-~~~~~~~~~~~ 474 (485)
++ +++.+|++.+.
T Consensus 589 L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 589 ISVLDIKDNPNISI 602 (636)
T ss_dssp CCEEECCSCTTCEE
T ss_pred CCEEECcCCCCccc
Confidence 54 78888876654
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=3.7e-20 Score=193.15 Aligned_cols=361 Identities=14% Similarity=0.095 Sum_probs=215.7
Q ss_pred hHHHHhhccccceeeeeecCCCcc-----ccccc-------chhh--hhcccccceeccccCccccchhHHHhhhhcccc
Q 011445 17 LAIMLTSCLQLESLSLKIRGFGVE-----VDACA-------FQSI--IFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLM 82 (485)
Q Consensus 17 l~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~-------~~~~--~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~ 82 (485)
++..+..+++|+.|+|.+|.+... |.... +... +..+ ..|+.|++++...
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L-~~L~~L~Ls~N~l--------------- 503 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPN--------------- 503 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEESCTT---------------
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC-CCCCEEECcCCCC---------------
Confidence 555578899999999998876331 00000 0000 0011 2366666655421
Q ss_pred ccCCCCccccccccCCCccEEEecccC-CCh-HHHHHHHh------cCCCCcEEecCCCCCCCcccccccChhHhh--hc
Q 011445 83 ETVQPPILTSSYYSSFNLRSLSLVLDV-ITD-ELLITITA------SLPFLVELDLEDRPNTEPLARLDLTSSGLQ--SL 152 (485)
Q Consensus 83 ~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~-~~~~~l~~------~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~--~l 152 (485)
...-+..+.++++|++|+++.|. ++. ..+..+.. .+++|++|++++| .++ .... .+
T Consensus 504 ----~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N---------~L~-~ip~~~~l 569 (876)
T 4ecn_A 504 ----MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN---------NLE-EFPASASL 569 (876)
T ss_dssp ----CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS---------CCC-BCCCHHHH
T ss_pred ----CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC---------cCC-ccCChhhh
Confidence 11112445778999999999887 776 44444432 3469999999995 444 2222 57
Q ss_pred CCCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCC-CcEEEecCCCCCCH
Q 011445 153 GSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHS-LKKFEVRSASFLSD 231 (485)
Q Consensus 153 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~ 231 (485)
..+++|+.|+++++.. ..++ ....+++|+.|+++++. +. .+...+..+++ |+.|+++++. +.
T Consensus 570 ~~L~~L~~L~Ls~N~l------~~lp------~~~~L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~-L~- 632 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKV------RHLE------AFGTNVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNK-LK- 632 (876)
T ss_dssp TTCTTCCEEECTTSCC------CBCC------CCCTTSEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSC-CC-
T ss_pred hcCCCCCEEECCCCCc------ccch------hhcCCCcceEEECcCCc-cc--cchHHHhhccccCCEEECcCCC-CC-
Confidence 8899999999988652 1222 12357889999999863 33 22222455677 9999999985 33
Q ss_pred HHHHHHHcCC--CCccEEEcccCCCCCHHHH---HHhh--CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCC
Q 011445 232 LAFHDLTGVP--CALVEVRLLWCRLITSETV---KKLA--SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI 304 (485)
Q Consensus 232 ~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~---~~l~--~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l 304 (485)
.++...... ++|+.|++++|.. ..... ..+. .+++|+.|+++++ .+.......+..+++|+.|++++|.+
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l-~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCT-TTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred -cCchhhhccccCCCCEEECcCCcC-CCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcC
Confidence 222222222 3499999988753 22100 0111 3458999999885 55532223334789999999999866
Q ss_pred ChHHHHHHH------hcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEE
Q 011445 305 TDSGLSILA------QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDL 378 (485)
Q Consensus 305 ~~~~~~~l~------~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 378 (485)
.......+. ..|++|+.|++++|. ++. +.... ....+++|+.|+++++ .++. +..-...+++|+.|
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~--lp~~l--~~~~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTS--LSDDF--RATTLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAF 781 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCC--CCGGG--STTTCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEE
T ss_pred CccChHHhccccccccccCCccEEECCCCC-Ccc--chHHh--hhccCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEE
Confidence 622111110 123389999999886 542 21111 0025789999999986 5654 22222467899999
Q ss_pred EecCCC-----CCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCC
Q 011445 379 CVRSCF-----YVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKG 448 (485)
Q Consensus 379 ~l~~~~-----~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~ 448 (485)
++++|. .+.......+. .+++|+.|++++| .++. +....+++|+.|++++|++....
T Consensus 782 ~Ls~N~~ls~N~l~~~ip~~l~-------~L~~L~~L~Ls~N-~L~~-----Ip~~l~~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 782 GIRHQRDAEGNRILRQWPTGIT-------TCPSLIQLQIGSN-DIRK-----VDEKLTPQLYILDIADNPNISID 843 (876)
T ss_dssp ECCCCBCTTCCBCCCCCCTTGG-------GCSSCCEEECCSS-CCCB-----CCSCCCSSSCEEECCSCTTCEEE
T ss_pred ECCCCCCcccccccccChHHHh-------cCCCCCEEECCCC-CCCc-----cCHhhcCCCCEEECCCCCCCccC
Confidence 997743 12211111222 5899999999996 5532 21123479999999999977543
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=179.84 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=38.8
Q ss_pred CCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-EeccCccccccc
Q 011445 405 KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 475 (485)
Q Consensus 405 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~ 475 (485)
++|+.|++++| +++... ..+. .+++|+.|++++|.+...... .....+.++ +.+.+|++.++.
T Consensus 421 ~~L~~L~Ls~N-~l~~ip-~~~~--~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 421 PRIKVLDLHSN-KIKSIP-KQVV--KLEALQELNVASNQLKSVPDG----IFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTCCEEECCSS-CCCCCC-GGGG--GCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCBCCCH
T ss_pred ccCCEEECCCC-cccccc-hhhh--cCCCCCEEECCCCcCCccCHH----HhccCCcccEEECcCCCCcccC
Confidence 56777777774 555211 1121 577888888888887743222 223345554 788889888874
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=2.4e-20 Score=194.53 Aligned_cols=328 Identities=11% Similarity=0.003 Sum_probs=208.5
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccCh-hHhh-------hcCCCCCcceEEeCCc
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTS-SGLQ-------SLGSCHHLTGLSLTRC 166 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~-~~~~-------~l~~~~~L~~L~l~~~ 166 (485)
.++++|++|+|+.|.+....+..+ ..+++|++|++++|. .++. ..+. .+..+++|+.|+++++
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~--------~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNR--------GISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCT--------TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred ccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCC--------CcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 389999999999877655444445 459999999999962 1443 2222 3346779999999987
Q ss_pred cccCCCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCC-cc
Q 011445 167 RHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCA-LV 245 (485)
Q Consensus 167 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~ 245 (485)
. +..++. ......+++|+.|+++++ .+. .+. .+..+++|+.|+++++. +. .+......+++ |+
T Consensus 559 ~------L~~ip~---~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 559 N------LEEFPA---SASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVE 622 (876)
T ss_dssp C------CCBCCC---HHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSSC-CS--CCCTTSCEECTTCC
T ss_pred c------CCccCC---hhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCCc-cc--cchHHHhhccccCC
Confidence 5 122332 012347899999999986 344 222 35667999999999985 33 23333445677 99
Q ss_pred EEEcccCCCCCHHHHHHhhCC--CCCCEEEccCCCCCcHHHh---hccc--CCCCCCEEEcCCCCCChHHHHHHHhcCCC
Q 011445 246 EVRLLWCRLITSETVKKLASS--RNLEVLDLGGCKSIADTCL---RSIS--CLRKLTALNLTGADITDSGLSILAQGNLP 318 (485)
Q Consensus 246 ~L~l~~~~~l~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~l---~~l~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 318 (485)
.|++++|. +... ...+..+ ++|+.|+++++ .+..... ..+. .+++|+.|++++|.+.... ..+...+++
T Consensus 623 ~L~Ls~N~-L~~l-p~~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp-~~~~~~l~~ 698 (876)
T 4ecn_A 623 GLGFSHNK-LKYI-PNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP-TELFATGSP 698 (876)
T ss_dssp EEECCSSC-CCSC-CSCCCTTCSSCEEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC-HHHHHTTCC
T ss_pred EEECcCCC-CCcC-chhhhccccCCCCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCCcCCccC-HHHHccCCC
Confidence 99999876 4421 1122233 45999999985 4443211 1111 4569999999999877432 333445899
Q ss_pred ccEEEccCCCCCChhhHHhHhhhc---CCCCCCccEEecCCCCCCCHHHHHHHH--hhCCCCcEEEecCCCCCCHHHHHH
Q 011445 319 IMNLCLRGCKRVTDKGISHLLCVG---GTISQSLTTLDLGYMPGISDDGILTIA--AAGIGIIDLCVRSCFYVTDASVEA 393 (485)
Q Consensus 319 L~~L~l~~~~~l~~~~~~~l~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~~l~~~~~~~ 393 (485)
|+.|+++++. +..... .+.... -..+++|+.|++++| .++.. .... ..+++|+.|++++|. ++.. ...
T Consensus 699 L~~L~Ls~N~-L~~ip~-~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l--p~~l~~~~l~~L~~L~Ls~N~-L~~l-p~~ 771 (876)
T 4ecn_A 699 ISTIILSNNL-MTSIPE-NSLKPKDGNYKNTYLLTTIDLRFN-KLTSL--SDDFRATTLPYLSNMDVSYNC-FSSF-PTQ 771 (876)
T ss_dssp CSEEECCSCC-CSCCCT-TSSSCTTSCCTTGGGCCEEECCSS-CCCCC--CGGGSTTTCTTCCEEECCSSC-CSSC-CCG
T ss_pred CCEEECCCCc-CCccCh-HHhccccccccccCCccEEECCCC-CCccc--hHHhhhccCCCcCEEEeCCCC-CCcc-chh
Confidence 9999999886 542111 111000 012349999999997 66632 2222 267999999999986 5431 111
Q ss_pred HHhhCCCCcCCCCCcEEeccCCC-----CCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-Eecc
Q 011445 394 LARKQPDQEKSKQLRRLDLCNCI-----GLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLD 467 (485)
Q Consensus 394 l~~~~~~~~~~~~L~~L~l~~c~-----~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 467 (485)
+. .+++|+.|++++++ ++.......+. .+++|+.|++++|.+...... + .+.++ +++.
T Consensus 772 l~-------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~--~L~~L~~L~Ls~N~L~~Ip~~-l------~~~L~~LdLs 835 (876)
T 4ecn_A 772 PL-------NSSQLKAFGIRHQRDAEGNRILRQWPTGIT--TCPSLIQLQIGSNDIRKVDEK-L------TPQLYILDIA 835 (876)
T ss_dssp GG-------GCTTCCEEECCCCBCTTCCBCCCCCCTTGG--GCSSCCEEECCSSCCCBCCSC-C------CSSSCEEECC
T ss_pred hh-------cCCCCCEEECCCCCCcccccccccChHHHh--cCCCCCEEECCCCCCCccCHh-h------cCCCCEEECC
Confidence 22 59999999998733 33322222333 588999999999998643222 1 13454 7788
Q ss_pred Ccccccc
Q 011445 468 GCEIGCH 474 (485)
Q Consensus 468 ~~~~~~~ 474 (485)
+|++...
T Consensus 836 ~N~l~~i 842 (876)
T 4ecn_A 836 DNPNISI 842 (876)
T ss_dssp SCTTCEE
T ss_pred CCCCCcc
Confidence 8876543
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=1.7e-20 Score=186.08 Aligned_cols=303 Identities=20% Similarity=0.148 Sum_probs=211.0
Q ss_pred CCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCc
Q 011445 97 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 176 (485)
Q Consensus 97 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 176 (485)
.+++++|+++.+.+.......+ ..+++|++|+|++| .++......+..+++|++|+++++. +..
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~------l~~ 94 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNEN---------IVSAVEPGAFNNLFNLRTLGLRSNR------LKL 94 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTS---------CCCEECTTTTTTCTTCCEEECCSSC------CCS
T ss_pred CCCCcEEECCCCccceECHhHc-cCCCCCCEEECCCC---------ccCEeChhhhhCCccCCEEECCCCc------CCc
Confidence 4689999999988876544444 45999999999994 5565556678899999999998864 122
Q ss_pred cCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCC
Q 011445 177 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 256 (485)
Q Consensus 177 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 256 (485)
+... ....+++|+.|+++++. +.... ...+..+++|+.|+++++. +.... ...+..+++|+.|+++++. ++
T Consensus 95 ~~~~----~~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~ 165 (477)
T 2id5_A 95 IPLG----VFTGLSNLTKLDISENK-IVILL-DYMFQDLYNLKSLEVGDND-LVYIS-HRAFSGLNSLEQLTLEKCN-LT 165 (477)
T ss_dssp CCTT----SSTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEEECCTT-CCEEC-TTSSTTCTTCCEEEEESCC-CS
T ss_pred cCcc----cccCCCCCCEEECCCCc-cccCC-hhHccccccCCEEECCCCc-cceeC-hhhccCCCCCCEEECCCCc-Cc
Confidence 2221 12367899999999863 33211 1124667999999999984 22111 1123467899999999875 55
Q ss_pred HHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHH
Q 011445 257 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 336 (485)
Q Consensus 257 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 336 (485)
......+..+++|+.|+++++ .+.......+..+++|+.|++++|............ ..+|++|+++++. ++.....
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~-l~~~~~~ 242 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCN-LTAVPYL 242 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSC-CCSCCHH
T ss_pred ccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCc-ccccCHH
Confidence 545556788999999999985 555444456678999999999987543322222222 4589999999886 5544333
Q ss_pred hHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCC
Q 011445 337 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 416 (485)
Q Consensus 337 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 416 (485)
.+. .+++|+.|+++++ .++......+ ..+++|+.|++++|. ++......+. .+++|+.|+++++
T Consensus 243 ~~~-----~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-------~l~~L~~L~L~~N- 306 (477)
T 2id5_A 243 AVR-----HLVYLRFLNLSYN-PISTIEGSML-HELLRLQEIQLVGGQ-LAVVEPYAFR-------GLNYLRVLNVSGN- 306 (477)
T ss_dssp HHT-----TCTTCCEEECCSS-CCCEECTTSC-TTCTTCCEEECCSSC-CSEECTTTBT-------TCTTCCEEECCSS-
T ss_pred Hhc-----CccccCeeECCCC-cCCccChhhc-cccccCCEEECCCCc-cceECHHHhc-------CcccCCEEECCCC-
Confidence 333 6889999999986 5654322222 357899999999985 5443222222 5899999999995
Q ss_pred CCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 417 GLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 417 ~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
.++......+. .+++|+.|++++|++.
T Consensus 307 ~l~~~~~~~~~--~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 307 QLTTLEESVFH--SVGNLETLILDSNPLA 333 (477)
T ss_dssp CCSCCCGGGBS--CGGGCCEEECCSSCEE
T ss_pred cCceeCHhHcC--CCcccCEEEccCCCcc
Confidence 77764444443 6789999999999977
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=4.6e-21 Score=202.90 Aligned_cols=336 Identities=17% Similarity=0.092 Sum_probs=156.8
Q ss_pred HhhccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccch-hH----HHhhhhccccccCCCC--ccccc
Q 011445 21 LTSCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDA-FF----LIRRIGRNLMETVQPP--ILTSS 93 (485)
Q Consensus 21 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~----l~~~~~~~~~~~~~~~--~~~~~ 93 (485)
+..+++|+.|+++++..........|.. + ..|+.|+|++...... +. +..++.+.+..+-... .....
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~----L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRN----L-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSS----C-TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcC----C-CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcc
Confidence 4668888888888764322222222322 2 2377777776554333 11 1122444444443221 22233
Q ss_pred cccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCc--ccc---------------cccChhHhhhcCCCC
Q 011445 94 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEP--LAR---------------LDLTSSGLQSLGSCH 156 (485)
Q Consensus 94 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~--~~~---------------~~~~~~~~~~l~~~~ 156 (485)
+.++++|++|+++.|.+....+......+++|++|++++|..... ..+ +.+.......+..++
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~ 198 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcC
Confidence 677888888888877765543322234588888888888643210 000 001110011111222
Q ss_pred ------CcceEEeCCccccCC--C-------------------------ccCccCcHhHHHHhh-cCCCccEEEeCCCCC
Q 011445 157 ------HLTGLSLTRCRHNHQ--G-------------------------TFKRVNDMGMFLLSE-GCKGLESVRLGGFSK 202 (485)
Q Consensus 157 ------~L~~L~l~~~~~~~~--~-------------------------~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~ 202 (485)
.|+.|+++++..... . ....+.+.....+.. ..++|+.|+++++.
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~- 277 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF- 277 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-
Confidence 266777766521000 0 000000000000000 12466667766642
Q ss_pred CCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcH
Q 011445 203 VSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD 282 (485)
Q Consensus 203 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 282 (485)
+.... ...+..+++|+.|+++++. +.... ...+..+++|+.|+++++. ++......+..+++|+.|+++++ .+..
T Consensus 278 l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~ 352 (844)
T 3j0a_A 278 VFSLN-SRVFETLKDLKVLNLAYNK-INKIA-DEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAI 352 (844)
T ss_dssp CCEEC-SCCSSSCCCCCEEEEESCC-CCEEC-TTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCC
T ss_pred ccccC-hhhhhcCCCCCEEECCCCc-CCCCC-hHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCc
Confidence 22110 1113445677777776663 21100 1122345667777776654 32222223445667777777663 4433
Q ss_pred HHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCH
Q 011445 283 TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISD 362 (485)
Q Consensus 283 ~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~ 362 (485)
.....+..+++|+.|++++|.++... .+++|+.|.++++. +. .+. ....+++.|+++++ .++.
T Consensus 353 ~~~~~~~~l~~L~~L~Ls~N~l~~i~------~~~~L~~L~l~~N~-l~-----~l~----~~~~~l~~L~ls~N-~l~~ 415 (844)
T 3j0a_A 353 IQDQTFKFLEKLQTLDLRDNALTTIH------FIPSIPDIFLSGNK-LV-----TLP----KINLTANLIHLSEN-RLEN 415 (844)
T ss_dssp CCSSCSCSCCCCCEEEEETCCSCCCS------SCCSCSEEEEESCC-CC-----CCC----CCCTTCCEEECCSC-CCCS
T ss_pred cChhhhcCCCCCCEEECCCCCCCccc------CCCCcchhccCCCC-cc-----ccc----ccccccceeecccC-cccc
Confidence 33334456677777777776554321 14566666666554 22 111 12344555555553 3333
Q ss_pred HHHHHHHhhCCCCcEEEecCCC
Q 011445 363 DGILTIAAAGIGIIDLCVRSCF 384 (485)
Q Consensus 363 ~~~~~l~~~~~~L~~L~l~~~~ 384 (485)
.........+++|+.|++++|.
T Consensus 416 l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 416 LDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp STTHHHHTTCTTCCEEEEESCC
T ss_pred CchhhhhhcCCccceeeCCCCc
Confidence 2222222345666666665554
No 39
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=1.1e-19 Score=192.26 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=22.1
Q ss_pred ccccceeeeeecCCCcccccccchhhhhcccccceeccccCc
Q 011445 24 CLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPV 65 (485)
Q Consensus 24 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 65 (485)
.++|++|+|++|.+. ......|.. ...|+.|++++.
T Consensus 23 p~~l~~LdLs~N~i~-~i~~~~~~~-----l~~L~~LdLs~n 58 (844)
T 3j0a_A 23 LNTTERLLLSFNYIR-TVTASSFPF-----LEQLQLLELGSQ 58 (844)
T ss_dssp CTTCCEEEEESCCCC-EECSSSCSS-----CCSCSEEEECTT
T ss_pred CCCcCEEECCCCcCC-ccChhHCcc-----cccCeEEeCCCC
Confidence 468999999987752 222223322 234888888765
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=2.6e-19 Score=172.71 Aligned_cols=303 Identities=13% Similarity=0.052 Sum_probs=200.3
Q ss_pred cccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCc
Q 011445 94 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 173 (485)
Q Consensus 94 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 173 (485)
+..+++|++|+++++.+.......+ ..+++|++|++++| .++......+..+++|++|+++++.
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~------ 128 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFN---------AIRYLPPHVFQNVPLLTVLVLERND------ 128 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSS---------CCCCCCTTTTTTCTTCCEEECCSSC------
T ss_pred hcccccCcEEECCCCcccccChhhc-cCCCCcCEEECCCC---------CCCcCCHHHhcCCCCCCEEECCCCc------
Confidence 4567888999998877765443334 34888999999884 4554445557788889999998764
Q ss_pred cCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCC
Q 011445 174 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 253 (485)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 253 (485)
+..+... +...+++|++|+++++. +..... ..+..+++|+.|+++++. +.... ...+++|+.|+++++.
T Consensus 129 l~~l~~~----~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 129 LSSLPRG----IFHNTPKLTTLSMSNNN-LERIED-DTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSYNL 197 (390)
T ss_dssp CCCCCTT----TTTTCTTCCEEECCSSC-CCBCCT-TTTSSCTTCCEEECCSSC-CSBCC----GGGCTTCSEEECCSSC
T ss_pred cCcCCHH----HhcCCCCCcEEECCCCc-cCccCh-hhccCCCCCCEEECCCCc-CCccc----cccccccceeeccccc
Confidence 1222221 12356889999988763 322111 124556889999998874 32211 3456888999888764
Q ss_pred CCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChh
Q 011445 254 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 333 (485)
Q Consensus 254 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 333 (485)
++ .+...++|+.|+++++ .+.... ....++|+.|++++|.+++.. . ...+++|++|+++++. +...
T Consensus 198 -l~-----~~~~~~~L~~L~l~~n-~l~~~~---~~~~~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~Ls~n~-l~~~ 263 (390)
T 3o6n_A 198 -LS-----TLAIPIAVEELDASHN-SINVVR---GPVNVELTILKLQHNNLTDTA--W-LLNYPGLVEVDLSYNE-LEKI 263 (390)
T ss_dssp -CS-----EEECCSSCSEEECCSS-CCCEEE---CCCCSSCCEEECCSSCCCCCG--G-GGGCTTCSEEECCSSC-CCEE
T ss_pred -cc-----ccCCCCcceEEECCCC-eeeecc---ccccccccEEECCCCCCcccH--H-HcCCCCccEEECCCCc-CCCc
Confidence 32 2345578999999884 443321 134589999999999877642 2 3458999999999886 5544
Q ss_pred hHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEecc
Q 011445 334 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 413 (485)
Q Consensus 334 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~ 413 (485)
....+. .+++|+.|+++++ .++... .....+++|+.|++++|. ++... ..+. .+++|+.|+++
T Consensus 264 ~~~~~~-----~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n~-l~~~~-~~~~-------~l~~L~~L~L~ 326 (390)
T 3o6n_A 264 MYHPFV-----KMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH-LLHVE-RNQP-------QFDRLENLYLD 326 (390)
T ss_dssp ESGGGT-----TCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSSC-CCCCG-GGHH-------HHTTCSEEECC
T ss_pred ChhHcc-----ccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCCc-ceecC-cccc-------ccCcCCEEECC
Confidence 333333 6789999999996 565421 111357899999999996 54321 1233 37899999999
Q ss_pred CCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce
Q 011445 414 NCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT 463 (485)
Q Consensus 414 ~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 463 (485)
+| .++... ...+++|+.|++++|++. .+....+.+..+...
T Consensus 327 ~N-~i~~~~-----~~~~~~L~~L~l~~N~~~---~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 327 HN-SIVTLK-----LSTHHTLKNLTLSHNDWD---CNSLRALFRNVARPA 367 (390)
T ss_dssp SS-CCCCCC-----CCTTCCCSEEECCSSCEE---HHHHHHHTTTCCTTT
T ss_pred CC-ccceeC-----chhhccCCEEEcCCCCcc---chhHHHHHHHHHhhc
Confidence 96 565532 246889999999999976 344555555444443
No 41
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=9.2e-17 Score=153.00 Aligned_cols=147 Identities=20% Similarity=0.189 Sum_probs=65.8
Q ss_pred CCCCEEEcCCCCCChHHHHHHHh---cCC-CccEEEccCCCCCChhhHHhHhhhcCCCC-CCccEEecCCCCCCCHHHHH
Q 011445 292 RKLTALNLTGADITDSGLSILAQ---GNL-PIMNLCLRGCKRVTDKGISHLLCVGGTIS-QSLTTLDLGYMPGISDDGIL 366 (485)
Q Consensus 292 ~~L~~L~l~~~~l~~~~~~~l~~---~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~~~~-~~L~~L~l~~~~~~~~~~~~ 366 (485)
++|++|++++|.+++.+...+.. ..+ +|++|++++|. +++.+...++... ..+ ++|++|+++++ .+++.+..
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N-~i~~~~~~ 214 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFL-ASIPASVTSLDLSAN-LLGLKSYA 214 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHH-HTSCTTCCEEECTTS-CGGGSCHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHH-HhCCCCCCEEECCCC-CCChhHHH
Confidence 35555555555554433333221 122 55555555554 4333322222100 122 35666666554 44443322
Q ss_pred HHHh---h-CCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCC--CCCHHHHHhhc--CCCCCCceEEe
Q 011445 367 TIAA---A-GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI--GLSVDSLRWVK--RPSFRGLHWLG 438 (485)
Q Consensus 367 ~l~~---~-~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~--~l~~~~~~~l~--~~~~~~L~~L~ 438 (485)
.+.. . .++|++|++++|. +++.+...+..... .+++|+.|++++|. .++..++..+. ...+++|+.|+
T Consensus 215 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~---~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 215 ELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKD---SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp HHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTT---TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred HHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHh---cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 2221 1 3456666666553 44443333333222 45566666666542 24544444332 12345566666
Q ss_pred ecceecc
Q 011445 439 IGQTRLA 445 (485)
Q Consensus 439 l~~~~~~ 445 (485)
+++|.+.
T Consensus 291 L~~N~l~ 297 (362)
T 3goz_A 291 KNGKEIH 297 (362)
T ss_dssp TTSCBCC
T ss_pred cCCCcCC
Confidence 6666654
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=2.9e-18 Score=173.52 Aligned_cols=388 Identities=16% Similarity=0.109 Sum_probs=210.9
Q ss_pred hccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhH--H---HhhhhccccccCCCCccccccccC
Q 011445 23 SCLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFF--L---IRRIGRNLMETVQPPILTSSYYSS 97 (485)
Q Consensus 23 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--l---~~~~~~~~~~~~~~~~~~~~~~~~ 97 (485)
.|...+.++++++.+...+ ...|..++.+++++.....+.. + ..++.+.+.++-...+....+.++
T Consensus 29 ~~~~~~~l~ls~~~L~~ip---------~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVP---------KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp ----CCEEECTTSCCCSCC---------TTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred ccCCCcEEEcCCCCCccCC---------CCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 3566678888876653222 2245679999998876544431 1 122445555554444445556777
Q ss_pred CCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhH-hhhcCCCCCcceEEeCCccccCCCccCc
Q 011445 98 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSG-LQSLGSCHHLTGLSLTRCRHNHQGTFKR 176 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 176 (485)
++|++|++++|.++..... .+++|++|++++| .++... ...+..+++|++|+++++.
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N---------~l~~l~~p~~~~~l~~L~~L~L~~n~--------- 157 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC----PMASLRHLDLSFN---------DFDVLPVCKEFGNLTKLTFLGLSAAK--------- 157 (562)
T ss_dssp TTCCEEECTTSCCCEECSC----CCTTCSEEECCSS---------CCSBCCCCGGGGGCTTCCEEEEECSB---------
T ss_pred CCCCEEECCCCcCCccCcc----ccccCCEEECCCC---------CccccCchHhhcccCcccEEecCCCc---------
Confidence 7777777777666532211 4677777777774 333322 2346677778888877653
Q ss_pred cCcHhHHHHhhcCCCc--cEEEeCCCCC----CC----------------------------------------------
Q 011445 177 VNDMGMFLLSEGCKGL--ESVRLGGFSK----VS---------------------------------------------- 204 (485)
Q Consensus 177 ~~~~~l~~l~~~~~~L--~~L~l~~~~~----~~---------------------------------------------- 204 (485)
+....+. .+++| +.|+++++.. ..
T Consensus 158 l~~~~~~----~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (562)
T 3a79_B 158 FRQLDLL----PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233 (562)
T ss_dssp CCTTTTG----GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST
T ss_pred cccCchh----hhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc
Confidence 2222221 22344 7777665421 00
Q ss_pred ----HHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHH--cCCCCccEEEcccCCCC---CH------------------
Q 011445 205 ----DAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLT--GVPCALVEVRLLWCRLI---TS------------------ 257 (485)
Q Consensus 205 ----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l---~~------------------ 257 (485)
..+....+...++|+.|++.++. +....+..+. ...++|++|++++|... ..
T Consensus 234 ~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~ 312 (562)
T 3a79_B 234 NCQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHV 312 (562)
T ss_dssp THHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEE
T ss_pred ccchHHHHHHHHhccCcceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhc
Confidence 00011112333444444444432 2322222211 12236666666554311 00
Q ss_pred ---------HHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCC
Q 011445 258 ---------ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 328 (485)
Q Consensus 258 ---------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 328 (485)
..+..+....+|+.|+++++ .+... .....+++|++|++++|.+.+.....+ ..+++|+.|+++++.
T Consensus 313 ~~~~~~~p~~~~~~~~~~~~L~~L~l~~n-~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 313 KNQVFLFSKEALYSVFAEMNIKMLSISDT-PFIHM--VCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNG 388 (562)
T ss_dssp EECCCSSCHHHHHHHHHTCCCSEEEEESS-CCCCC--CCCSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSC
T ss_pred ccceeecChhhhhhhhccCcceEEEccCC-Ccccc--cCccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCC
Confidence 11111111234555555543 22111 111467889999999887776433333 347889999998876
Q ss_pred CCChh-hHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCC-CC
Q 011445 329 RVTDK-GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKS-KQ 406 (485)
Q Consensus 329 ~l~~~-~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~-~~ 406 (485)
++.. .+.... ..+++|+.|+++++ .++..........+++|++|++++|. ++.. ... .+ ++
T Consensus 389 -l~~~~~~~~~~----~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~----~~~------~l~~~ 451 (562)
T 3a79_B 389 -LKNFFKVALMT----KNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNM-LTGS----VFR------CLPPK 451 (562)
T ss_dssp -CCBTTHHHHTT----TTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSC-CCGG----GGS------SCCTT
T ss_pred -cCCcccchhhh----cCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCC-CCcc----hhh------hhcCc
Confidence 5432 222222 36789999999886 44431111112346889999998886 5532 222 34 68
Q ss_pred CcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-EeccCccccccc
Q 011445 407 LRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 475 (485)
Q Consensus 407 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~ 475 (485)
|+.|++++| +++.... .+ ..+++|+.|++++|.+...... .....+.++ +.+.+|++.++.
T Consensus 452 L~~L~L~~N-~l~~ip~-~~--~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 452 VKVLDLHNN-RIMSIPK-DV--THLQALQELNVASNQLKSVPDG----VFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CSEEECCSS-CCCCCCT-TT--TSSCCCSEEECCSSCCCCCCTT----STTTCTTCCCEECCSCCBCCCH
T ss_pred CCEEECCCC-cCcccCh-hh--cCCCCCCEEECCCCCCCCCCHH----HHhcCCCCCEEEecCCCcCCCc
Confidence 999999996 6763111 11 2578999999999998854222 234455565 789999999874
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=1.1e-17 Score=161.25 Aligned_cols=317 Identities=17% Similarity=0.143 Sum_probs=213.4
Q ss_pred ccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHHHhhhhccccccCCCCccccccccCCCccEE
Q 011445 24 CLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSL 103 (485)
Q Consensus 24 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 103 (485)
.++|+.|++..+.++..+ . .++...+ .++.+++++.....+ ....+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~-~----~~~~~l~-~L~~L~L~~n~i~~~-------------------~~~~~~~l~~L~~L 98 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLP-A----ALLDSFR-QVELLNLNDLQIEEI-------------------DTYAFAYAHTIQKL 98 (390)
T ss_dssp GCCCSEEEEESCEESEEC-T----HHHHHCC-CCSEEECTTSCCCEE-------------------CTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCC-h----hHhcccc-cCcEEECCCCccccc-------------------ChhhccCCCCcCEE
Confidence 679999999976542221 1 1122233 488888887653322 12345778999999
Q ss_pred EecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcHhHH
Q 011445 104 SLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMF 183 (485)
Q Consensus 104 ~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 183 (485)
+++++.+.......+ ..+++|++|++++| .++......+..+++|++|+++++.. ..+....
T Consensus 99 ~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n---------~l~~l~~~~~~~l~~L~~L~L~~n~l------~~~~~~~-- 160 (390)
T 3o6n_A 99 YMGFNAIRYLPPHVF-QNVPLLTVLVLERN---------DLSSLPRGIFHNTPKLTTLSMSNNNL------ERIEDDT-- 160 (390)
T ss_dssp ECCSSCCCCCCTTTT-TTCTTCCEEECCSS---------CCCCCCTTTTTTCTTCCEEECCSSCC------CBCCTTT--
T ss_pred ECCCCCCCcCCHHHh-cCCCCCCEEECCCC---------ccCcCCHHHhcCCCCCcEEECCCCcc------CccChhh--
Confidence 999888766544334 45899999999995 44443333467899999999988641 2222211
Q ss_pred HHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHh
Q 011445 184 LLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKL 263 (485)
Q Consensus 184 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 263 (485)
...+++|+.|+++++ .++... ...+++|+.|+++++. +.. ....+.|++|+++++. +... ..
T Consensus 161 --~~~l~~L~~L~l~~n-~l~~~~----~~~l~~L~~L~l~~n~-l~~------~~~~~~L~~L~l~~n~-l~~~---~~ 222 (390)
T 3o6n_A 161 --FQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL-LST------LAIPIAVEELDASHNS-INVV---RG 222 (390)
T ss_dssp --TSSCTTCCEEECCSS-CCSBCC----GGGCTTCSEEECCSSC-CSE------EECCSSCSEEECCSSC-CCEE---EC
T ss_pred --ccCCCCCCEEECCCC-cCCccc----cccccccceeeccccc-ccc------cCCCCcceEEECCCCe-eeec---cc
Confidence 236789999999986 333322 3557999999999884 221 1345789999999865 3322 11
Q ss_pred hCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcC
Q 011445 264 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG 343 (485)
Q Consensus 264 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 343 (485)
...++|+.|+++++ .+++. ..+..+++|++|++++|.+.......+. .+++|++|+++++. ++... ...
T Consensus 223 ~~~~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~--~~~---- 291 (390)
T 3o6n_A 223 PVNVELTILKLQHN-NLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNR-LVALN--LYG---- 291 (390)
T ss_dssp CCCSSCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSC-CCEEE--CSS----
T ss_pred cccccccEEECCCC-CCccc--HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCc-CcccC--ccc----
Confidence 23579999999985 55543 5677899999999999987765433333 48999999999886 54321 111
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHH
Q 011445 344 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 423 (485)
Q Consensus 344 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 423 (485)
..+++|+.|+++++ .++..... ...+++|+.|++++|. ++... + . .+++|+.|+++++ .++....
T Consensus 292 ~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~---~-~------~~~~L~~L~l~~N-~~~~~~~ 356 (390)
T 3o6n_A 292 QPIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLK---L-S------THHTLKNLTLSHN-DWDCNSL 356 (390)
T ss_dssp SCCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCC---C-C------TTCCCSEEECCSS-CEEHHHH
T ss_pred CCCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-cceeC---c-h------hhccCCEEEcCCC-CccchhH
Confidence 35789999999997 55532111 2346899999999996 54331 1 1 5899999999994 7777776
Q ss_pred Hhhc
Q 011445 424 RWVK 427 (485)
Q Consensus 424 ~~l~ 427 (485)
..+.
T Consensus 357 ~~~~ 360 (390)
T 3o6n_A 357 RALF 360 (390)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6653
No 44
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=1.2e-16 Score=152.25 Aligned_cols=267 Identities=15% Similarity=0.158 Sum_probs=131.9
Q ss_pred EEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHh----hhcCCCC-CcceEEeCCccccCCCccCc
Q 011445 102 SLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGL----QSLGSCH-HLTGLSLTRCRHNHQGTFKR 176 (485)
Q Consensus 102 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~ 176 (485)
+++++.+.++.. +..+....++|++|++++| .+++.+. ..+..++ +|++|++++|.
T Consensus 2 ~~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n---------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--------- 62 (362)
T 3goz_A 2 NYKLTLHPGSNP-VEEFTSIPHGVTSLDLSLN---------NLYSISTVELIQAFANTPASVTSLNLSGNS--------- 62 (362)
T ss_dssp EEECCCCTTCCH-HHHHHTSCTTCCEEECTTS---------CGGGSCHHHHHHHHHTCCTTCCEEECCSSC---------
T ss_pred ccccccccchHH-HHHHHhCCCCceEEEccCC---------CCChHHHHHHHHHHHhCCCceeEEECcCCC---------
Confidence 355666666544 3344444555888888884 4554444 4455666 77777777654
Q ss_pred cCcHhHHHH---hhc-CCCccEEEeCCCCCCCH---HHHHHHHHhC-CCCcEEEecCCCCCCH---HHHHHHHcCCCCcc
Q 011445 177 VNDMGMFLL---SEG-CKGLESVRLGGFSKVSD---AGFAAILLSC-HSLKKFEVRSASFLSD---LAFHDLTGVPCALV 245 (485)
Q Consensus 177 ~~~~~l~~l---~~~-~~~L~~L~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~ 245 (485)
+++.+...+ ... +++|++|++++|. ++. ..+...+..+ ++|+.|+++++. ++. ..+.......
T Consensus 63 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~---- 136 (362)
T 3goz_A 63 LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNL---- 136 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTS----
T ss_pred CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhC----
Confidence 333322222 222 2666777766652 222 2222333333 566666666553 221 1222222221
Q ss_pred EEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhc----ccCCC-CCCEEEcCCCCCChHHHHHHH---hcC-
Q 011445 246 EVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRS----ISCLR-KLTALNLTGADITDSGLSILA---QGN- 316 (485)
Q Consensus 246 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~----l~~~~-~L~~L~l~~~~l~~~~~~~l~---~~~- 316 (485)
.++|++|+++++ .+++.+... +...+ +|++|++++|.+++.+...+. ..+
T Consensus 137 --------------------~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 195 (362)
T 3goz_A 137 --------------------PASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195 (362)
T ss_dssp --------------------CTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred --------------------CCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCC
Confidence 235555555542 333322222 22333 566666666655444332222 223
Q ss_pred CCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHH---HHhhCCCCcEEEecCCC--CCCHHHH
Q 011445 317 LPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILT---IAAAGIGIIDLCVRSCF--YVTDASV 391 (485)
Q Consensus 317 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~--~l~~~~~ 391 (485)
++|+.|+++++. +++.+...++.......++|++|+++++ .+++.+... +...+++|+.|++++|. .+++.++
T Consensus 196 ~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~ 273 (362)
T 3goz_A 196 ASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC 273 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH
T ss_pred CCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH
Confidence 366666666654 5444333333111112346666666664 455533322 22345667777776664 4666666
Q ss_pred HHHHhhCCCCcCCCCCcEEeccCCCCCCH
Q 011445 392 EALARKQPDQEKSKQLRRLDLCNCIGLSV 420 (485)
Q Consensus 392 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 420 (485)
..+....+ .+++|+.|+++++ .+.+
T Consensus 274 ~~l~~~~~---~l~~L~~LdL~~N-~l~~ 298 (362)
T 3goz_A 274 KALGAAFP---NIQKIILVDKNGK-EIHP 298 (362)
T ss_dssp HHHHTTST---TCCEEEEECTTSC-BCCG
T ss_pred HHHHHHhc---cCCceEEEecCCC-cCCC
Confidence 66665444 5666667777663 4554
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.72 E-value=2.8e-18 Score=168.12 Aligned_cols=36 Identities=22% Similarity=0.070 Sum_probs=18.0
Q ss_pred CCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 404 SKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 404 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
+++|+.|+++++ +++.. .+ ..|++|+.|++++|++.
T Consensus 317 ~~~L~~L~L~~N-~l~~l---~l--~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 317 NPKLVYLYLNNT-ELTEL---DV--SHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CTTCCEEECTTC-CCSCC---CC--TTCTTCSEEECCSSCCC
T ss_pred cccCCEEECCCC-ccccc---cc--ccCCcCcEEECCCCCCC
Confidence 455555555553 44432 12 24555666666555554
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=1e-18 Score=177.90 Aligned_cols=290 Identities=14% Similarity=0.057 Sum_probs=189.3
Q ss_pred cccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCC
Q 011445 92 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ 171 (485)
Q Consensus 92 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 171 (485)
..+.++++|++|+++++.+.......+ ..+++|++|+|++| .++......++.+++|+.|+++++.
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~---- 134 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFN---------AIRYLPPHVFQNVPLLTVLVLERND---- 134 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSS---------CCCCCCTTTTTTCTTCCEEECCSSC----
T ss_pred HHHccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCC---------cCCCCCHHHHcCCCCCCEEEeeCCC----
Confidence 345668888999888877765543344 34888899998884 4555545556788889999988764
Q ss_pred CccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEccc
Q 011445 172 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLW 251 (485)
Q Consensus 172 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 251 (485)
+..+... +...+++|+.|+++++. +.... ...+..+++|+.|+++++. +.... ...+++|+.|++++
T Consensus 135 --l~~l~~~----~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 135 --LSSLPRG----IFHNTPKLTTLSMSNNN-LERIE-DDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHANVSY 201 (597)
T ss_dssp --CCCCCTT----TTTTCTTCCEEECCSSC-CCBCC-TTTTTTCTTCCEEECTTSC-CSBCC----GGGCTTCSEEECCS
T ss_pred --CCCCCHH----HhccCCCCCEEEeeCCc-CCCCC-hhhhhcCCcCcEEECcCCC-CCCcC----hhhhhhhhhhhccc
Confidence 1222221 12356888899888863 32211 1124567888999988874 32211 34568888888887
Q ss_pred CCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCC
Q 011445 252 CRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVT 331 (485)
Q Consensus 252 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 331 (485)
+. ++ .+...++|+.|+++++ .+..... ...++|+.|++++|.+++. .. ...+++|+.|+++++. +.
T Consensus 202 n~-l~-----~l~~~~~L~~L~ls~n-~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~Ls~N~-l~ 267 (597)
T 3oja_B 202 NL-LS-----TLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNE-LE 267 (597)
T ss_dssp SC-CS-----EEECCTTCSEEECCSS-CCCEEEC---SCCSCCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSC-CC
T ss_pred Cc-cc-----cccCCchhheeeccCC-ccccccc---ccCCCCCEEECCCCCCCCC--hh-hccCCCCCEEECCCCc-cC
Confidence 64 32 2345678888888874 3432111 2347899999999877763 22 3358899999999886 55
Q ss_pred hhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEe
Q 011445 332 DKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLD 411 (485)
Q Consensus 332 ~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~ 411 (485)
......+. .+++|+.|+++++ .++.. ......+++|+.|++++|. ++... ..+. .+++|+.|+
T Consensus 268 ~~~~~~~~-----~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~-------~l~~L~~L~ 330 (597)
T 3oja_B 268 KIMYHPFV-----KMQRLERLYISNN-RLVAL--NLYGQPIPTLKVLDLSHNH-LLHVE-RNQP-------QFDRLENLY 330 (597)
T ss_dssp EEESGGGT-----TCSSCCEEECTTS-CCCEE--ECSSSCCTTCCEEECCSSC-CCCCG-GGHH-------HHTTCSEEE
T ss_pred CCCHHHhc-----CccCCCEEECCCC-CCCCC--CcccccCCCCcEEECCCCC-CCccC-cccc-------cCCCCCEEE
Confidence 44333333 6789999999986 55542 1111347899999999886 44211 1233 378899999
Q ss_pred ccCCCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 412 LCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 412 l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
+++| .++... ...+++|+.|++++|++.
T Consensus 331 L~~N-~l~~~~-----~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 331 LDHN-SIVTLK-----LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCSS-CCCCCC-----CCTTCCCSEEECCSSCEE
T ss_pred CCCC-CCCCcC-----hhhcCCCCEEEeeCCCCC
Confidence 9996 555432 246789999999999875
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=8.3e-18 Score=164.81 Aligned_cols=300 Identities=18% Similarity=0.146 Sum_probs=189.2
Q ss_pred ccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCC
Q 011445 93 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 172 (485)
Q Consensus 93 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 172 (485)
.+.++++|++|+++.+.+... +.+ ..+++|++|++++| .++.. .+..+++|++|+++++.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~--~~l-~~l~~L~~L~Ls~n---------~l~~~---~~~~l~~L~~L~Ls~N~----- 96 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM--TGI-EKLTGLTKLICTSN---------NITTL---DLSQNTNLTYLACDSNK----- 96 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC--TTG-GGCTTCSEEECCSS---------CCSCC---CCTTCTTCSEEECCSSC-----
T ss_pred ChhHcCCCCEEEccCCCcccC--hhh-cccCCCCEEEccCC---------cCCeE---ccccCCCCCEEECcCCC-----
Confidence 446678888888887776653 234 34888888888885 33332 26678888888888764
Q ss_pred ccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccC
Q 011445 173 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWC 252 (485)
Q Consensus 173 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 252 (485)
++... ...+++|+.|+++++ .++... +..+++|+.|+++++. +.... ...+++|+.|++++|
T Consensus 97 ----l~~~~----~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 97 ----LTNLD----VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLN 158 (457)
T ss_dssp ----CSCCC----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTC
T ss_pred ----Cceee----cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCCc-cceec----cccCCcCCEEECCCC
Confidence 22211 235778888888876 333221 4566888888888874 22211 345778888888887
Q ss_pred CCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCCh
Q 011445 253 RLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTD 332 (485)
Q Consensus 253 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 332 (485)
..++.. .+..+++|+.|+++++ .++.. . +..+++|+.|++++|.++... ...+++|+.|+++++. ++.
T Consensus 159 ~~~~~~---~~~~l~~L~~L~ls~n-~l~~l--~-l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~-l~~ 226 (457)
T 3bz5_A 159 KKITKL---DVTPQTQLTTLDCSFN-KITEL--D-VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNK-LTE 226 (457)
T ss_dssp SCCCCC---CCTTCTTCCEEECCSS-CCCCC--C-CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSC
T ss_pred Cccccc---ccccCCcCCEEECCCC-cccee--c-cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCc-ccc
Confidence 544433 3556788888888874 45442 2 567788888888888766542 2347888888888776 544
Q ss_pred hhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEE----------ecCCCCCCHHHHHHHHhhCCCCc
Q 011445 333 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLC----------VRSCFYVTDASVEALARKQPDQE 402 (485)
Q Consensus 333 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~----------l~~~~~l~~~~~~~l~~~~~~~~ 402 (485)
.. + ..+++|+.|+++++ .++... ...+++|+.|+ +++|..+.... . +
T Consensus 227 ip---~-----~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~------~ 283 (457)
T 3bz5_A 227 ID---V-----TPLTQLTYFDCSVN-PLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----A------E 283 (457)
T ss_dssp CC---C-----TTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----C------T
T ss_pred cC---c-----cccCCCCEEEeeCC-cCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc----c------c
Confidence 21 2 35778888888876 454432 12345555554 44443222111 0 1
Q ss_pred CCCCCcEEeccCCCCCCHH-----HHHhhcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-EeccCcccc
Q 011445 403 KSKQLRRLDLCNCIGLSVD-----SLRWVKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIG 472 (485)
Q Consensus 403 ~~~~L~~L~l~~c~~l~~~-----~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 472 (485)
.|++|+.|++++|..+... .+..+....+++|+.|++++|.+... . ....+.++ +++.+|.+.
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l------~-l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL------D-VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC------C-CTTCTTCSEEECCSSCCC
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc------c-cccCCcCcEEECCCCCCC
Confidence 5789999999998643321 12222234678999999999998743 1 23345554 677776665
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=5.4e-17 Score=165.09 Aligned_cols=316 Identities=16% Similarity=0.144 Sum_probs=196.2
Q ss_pred ccccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHHHhhhhccccccCCCCccccccccCCCccEE
Q 011445 24 CLQLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSL 103 (485)
Q Consensus 24 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 103 (485)
+++++.+++..+.++..+. .++...+ .++.+++++.....+ ....+..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~-----~~~~~l~-~L~~L~L~~n~l~~~-------------------~~~~~~~l~~L~~L 104 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPA-----ALLDSFR-QVELLNLNDLQIEEI-------------------DTYAFAYAHTIQKL 104 (597)
T ss_dssp GCCCSEEEESSCEESEECT-----HHHHHCC-CCSEEECTTSCCCEE-------------------CTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCH-----HHHccCC-CCcEEECCCCCCCCC-------------------ChHHhcCCCCCCEE
Confidence 5788888888665422221 1122222 388888877643222 12344678889999
Q ss_pred EecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcHhHH
Q 011445 104 SLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMF 183 (485)
Q Consensus 104 ~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 183 (485)
+|++|.+.......+ ..+++|++|++++| .++......+..+++|+.|+++++. +..+....
T Consensus 105 ~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n---------~l~~l~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~-- 166 (597)
T 3oja_B 105 YMGFNAIRYLPPHVF-QNVPLLTVLVLERN---------DLSSLPRGIFHNTPKLTTLSMSNNN------LERIEDDT-- 166 (597)
T ss_dssp ECCSSCCCCCCTTTT-TTCTTCCEEECCSS---------CCCCCCTTTTTTCTTCCEEECCSSC------CCBCCTTT--
T ss_pred ECCCCcCCCCCHHHH-cCCCCCCEEEeeCC---------CCCCCCHHHhccCCCCCEEEeeCCc------CCCCChhh--
Confidence 998877765443333 34888999999885 4443333446778889999988764 12222211
Q ss_pred HHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHh
Q 011445 184 LLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKL 263 (485)
Q Consensus 184 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 263 (485)
...+++|+.|+++++ .++... ...+++|+.|+++++. +.. ....+.|+.|+++++. +.... .
T Consensus 167 --~~~l~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~l~~n~-l~~------l~~~~~L~~L~ls~n~-l~~~~---~ 228 (597)
T 3oja_B 167 --FQATTSLQNLQLSSN-RLTHVD----LSLIPSLFHANVSYNL-LST------LAIPIAVEELDASHNS-INVVR---G 228 (597)
T ss_dssp --TTTCTTCCEEECTTS-CCSBCC----GGGCTTCSEEECCSSC-CSE------EECCTTCSEEECCSSC-CCEEE---C
T ss_pred --hhcCCcCcEEECcCC-CCCCcC----hhhhhhhhhhhcccCc-ccc------ccCCchhheeeccCCc-ccccc---c
Confidence 235688899998886 333221 3456888888888874 221 1345678888888765 32111 0
Q ss_pred hCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcC
Q 011445 264 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG 343 (485)
Q Consensus 264 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 343 (485)
...++|+.|+++++ .+++ ...+..+++|+.|++++|.+.......+. .+++|+.|+++++. ++.. ....
T Consensus 229 ~~~~~L~~L~L~~n-~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~l--~~~~---- 297 (597)
T 3oja_B 229 PVNVELTILKLQHN-NLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNR-LVAL--NLYG---- 297 (597)
T ss_dssp SCCSCCCEEECCSS-CCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSC-CCEE--ECSS----
T ss_pred ccCCCCCEEECCCC-CCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCC-CCCC--Cccc----
Confidence 12368888888885 4544 35567788899999988877655433333 47889999988876 4432 1111
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHH
Q 011445 344 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL 423 (485)
Q Consensus 344 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 423 (485)
..+++|+.|++++| .++... .....+++|+.|++++|. ++... + . .+++|+.|+++++ .++....
T Consensus 298 ~~l~~L~~L~Ls~N-~l~~i~--~~~~~l~~L~~L~L~~N~-l~~~~---~-~------~~~~L~~L~l~~N-~~~~~~~ 362 (597)
T 3oja_B 298 QPIPTLKVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHNS-IVTLK---L-S------THHTLKNLTLSHN-DWDCNSL 362 (597)
T ss_dssp SCCTTCCEEECCSS-CCCCCG--GGHHHHTTCSEEECCSSC-CCCCC---C-C------TTCCCSEEECCSS-CEEHHHH
T ss_pred ccCCCCcEEECCCC-CCCccC--cccccCCCCCEEECCCCC-CCCcC---h-h------hcCCCCEEEeeCC-CCCChhH
Confidence 35788999999886 454321 111346889999998886 43321 1 1 5888999999884 5665444
Q ss_pred Hhh
Q 011445 424 RWV 426 (485)
Q Consensus 424 ~~l 426 (485)
..+
T Consensus 363 ~~~ 365 (597)
T 3oja_B 363 RAL 365 (597)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.68 E-value=2e-17 Score=155.60 Aligned_cols=273 Identities=17% Similarity=0.086 Sum_probs=137.2
Q ss_pred CCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCcc
Q 011445 98 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 177 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 177 (485)
+++++|+++++.++......+ ..+++|++|++++| .++......+..+++|++|+++++.. ..+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~Ls~n~l------~~l 115 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINN---------KISKISPGAFAPLVKLERLYLSKNQL------KEL 115 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSS---------CCCCBCTTTTTTCTTCCEEECCSSCC------SBC
T ss_pred CCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCC---------cCCeeCHHHhcCCCCCCEEECCCCcC------Ccc
Confidence 456666666555544322223 23566666666663 33333334455666666666665431 111
Q ss_pred CcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCH
Q 011445 178 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS 257 (485)
Q Consensus 178 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 257 (485)
... ..++|++|+++++ .+.... ...+..+++|+.|+++++..............+++|+.|+++++. ++.
T Consensus 116 ~~~-------~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~ 185 (330)
T 1xku_A 116 PEK-------MPKTLQELRVHEN-EITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITT 185 (330)
T ss_dssp CSS-------CCTTCCEEECCSS-CCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCS
T ss_pred Chh-------hcccccEEECCCC-cccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-ccc
Confidence 111 1256666666654 222211 112445566666666665421101111223446667777776654 221
Q ss_pred HHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHh
Q 011445 258 ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 337 (485)
Q Consensus 258 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 337 (485)
.. ..-.++|++|+++++ .++......+..+++|++|++++|.+.......+. .+++|++|+++++. +.... ..
T Consensus 186 l~---~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~lp-~~ 258 (330)
T 1xku_A 186 IP---QGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNK-LVKVP-GG 258 (330)
T ss_dssp CC---SSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSC-CSSCC-TT
T ss_pred CC---ccccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCc-CccCC-hh
Confidence 10 011267777777774 45544445566777777777777766554322232 36777888877775 43110 11
Q ss_pred HhhhcCCCCCCccEEecCCCCCCCHHHHHHHH-----hhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEec
Q 011445 338 LLCVGGTISQSLTTLDLGYMPGISDDGILTIA-----AAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDL 412 (485)
Q Consensus 338 l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l 412 (485)
+ ..+++|+.|+++++ .++..+...+. ...+.|+.|++++|+ +....+. +.... .+++|+.+++
T Consensus 259 l-----~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~--~~~f~---~~~~l~~l~L 326 (330)
T 1xku_A 259 L-----ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQ--PSTFR---CVYVRAAVQL 326 (330)
T ss_dssp T-----TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSC--GGGGT---TCCCGGGEEC
T ss_pred h-----ccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc-ccccccC--ccccc---cccceeEEEe
Confidence 1 24677888888775 45432222211 113678888888876 3221110 01111 4778888888
Q ss_pred cCC
Q 011445 413 CNC 415 (485)
Q Consensus 413 ~~c 415 (485)
+++
T Consensus 327 ~~N 329 (330)
T 1xku_A 327 GNY 329 (330)
T ss_dssp ---
T ss_pred ccc
Confidence 764
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=2.2e-18 Score=177.25 Aligned_cols=84 Identities=23% Similarity=0.065 Sum_probs=41.9
Q ss_pred hhhcccccceeccccCccccchhH-----HHhhhhccccccCCCCccccccccCCCccEEEecccCCChHHHHHHHhcCC
Q 011445 49 IIFFLPSTIKSLKLQPVLERDAFF-----LIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLP 123 (485)
Q Consensus 49 ~~~~~~~~l~~l~l~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 123 (485)
+...+|..++.|+|++.....++. +..++.+.+..+-...++..+|.++++|++|+|++|.++......+ ..++
T Consensus 46 vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f-~~L~ 124 (635)
T 4g8a_A 46 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLS 124 (635)
T ss_dssp CCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG-TTCT
T ss_pred cCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh-cCCC
Confidence 333455556666666554433321 1111333444443334444455666666666666665544332222 3366
Q ss_pred CCcEEecCCC
Q 011445 124 FLVELDLEDR 133 (485)
Q Consensus 124 ~L~~L~L~~~ 133 (485)
+|++|++++|
T Consensus 125 ~L~~L~Ls~N 134 (635)
T 4g8a_A 125 SLQKLVAVET 134 (635)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEECCCC
Confidence 6666666664
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=3e-17 Score=155.94 Aligned_cols=286 Identities=16% Similarity=0.069 Sum_probs=146.2
Q ss_pred CCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCc
Q 011445 97 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 176 (485)
Q Consensus 97 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 176 (485)
|+.....+.+.+.++... . .-.++|++|++++| .++......+..+++|+.|+++++.
T Consensus 30 C~~~~~c~~~~~~l~~iP-~---~~~~~L~~L~l~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~--------- 87 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIP-S---GLTEAVKSLDLSNN---------RITYISNSDLQRCVNLQALVLTSNG--------- 87 (353)
T ss_dssp ECTTSEEECCSTTCSSCC-T---TCCTTCCEEECTTS---------CCCEECTTTTTTCTTCCEEECTTSC---------
T ss_pred CCCCeEeeCCCCCccccc-c---cccccCcEEECCCC---------cCcccCHHHhccCCCCCEEECCCCc---------
Confidence 444445555555443321 1 11357777777773 4444434456677777777777653
Q ss_pred cCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCC
Q 011445 177 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 256 (485)
Q Consensus 177 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 256 (485)
++...... ...+++|++|+++++ .++... ...+..+++|+.|+++++. +...........+++|+.|+++++..++
T Consensus 88 l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 88 INTIEEDS-FSSLGSLEHLDLSYN-YLSNLS-SSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp CCEECTTT-TTTCTTCCEEECCSS-CCSSCC-HHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred cCccCHhh-cCCCCCCCEEECCCC-cCCcCC-HhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc
Confidence 22111111 124567777777764 222211 1124556777777777763 2210000122345666666666653333
Q ss_pred HHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHH
Q 011445 257 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 336 (485)
Q Consensus 257 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 336 (485)
......+..+++|++|+++++ .+.......+..+++|++|++++|.+...... +...+++|+.|+++++. ++.....
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~-l~~~~~~ 240 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEI-FVDVTSSVECLELRDTD-LDTFHFS 240 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHH-HHHHTTTEEEEEEESCB-CTTCCCC
T ss_pred ccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhh-hhhhcccccEEECCCCc-ccccccc
Confidence 332233455666777777663 34433334455666677777766665443322 22235666666666654 3221111
Q ss_pred hHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCC
Q 011445 337 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 416 (485)
Q Consensus 337 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 416 (485)
.+. . ...++.++.++++++. +++..+..++.... .+++|+.|++++|
T Consensus 241 ~l~---------------------------~-~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~---~l~~L~~L~Ls~N- 287 (353)
T 2z80_A 241 ELS---------------------------T-GETNSLIKKFTFRNVK-ITDESLFQVMKLLN---QISGLLELEFSRN- 287 (353)
T ss_dssp ----------------------------------CCCCCCEEEEESCB-CCHHHHHHHHHHHH---TCTTCCEEECCSS-
T ss_pred ccc---------------------------c-ccccchhhcccccccc-ccCcchhhhHHHHh---cccCCCEEECCCC-
Confidence 111 0 1234556666666663 66655544433222 4777777877774
Q ss_pred CCCHHHHHhhcCCCCCCceEEeecceeccC
Q 011445 417 GLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 417 ~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
+++......+ ..+++|+.|++++|++..
T Consensus 288 ~l~~i~~~~~--~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 288 QLKSVPDGIF--DRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCCTTTT--TTCTTCCEEECCSSCBCC
T ss_pred CCCccCHHHH--hcCCCCCEEEeeCCCccC
Confidence 5553222222 257788888888888663
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=4.8e-17 Score=153.03 Aligned_cols=297 Identities=13% Similarity=0.066 Sum_probs=188.0
Q ss_pred CccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccC
Q 011445 99 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN 178 (485)
Q Consensus 99 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 178 (485)
+++.++++.+.+.... . .-.+++++|++++| .++......+..+++|++|+++++.. ..+.
T Consensus 32 ~l~~l~~~~~~l~~lp-~---~~~~~l~~L~L~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~l------~~~~ 92 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVP-K---DLPPDTALLDLQNN---------KITEIKDGDFKNLKNLHTLILINNKI------SKIS 92 (330)
T ss_dssp ETTEEECTTSCCCSCC-C---SCCTTCCEEECCSS---------CCCCBCTTTTTTCTTCCEEECCSSCC------CCBC
T ss_pred CCeEEEecCCCccccC-c---cCCCCCeEEECCCC---------cCCEeChhhhccCCCCCEEECCCCcC------CeeC
Confidence 7888888866654321 1 12478999999995 45555555678899999999998641 2221
Q ss_pred cHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCH-
Q 011445 179 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITS- 257 (485)
Q Consensus 179 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~- 257 (485)
... ...+++|+.|+++++. ++.. . ....++|+.|+++++. +.... ......+++|+.|+++++. +..
T Consensus 93 ~~~----~~~l~~L~~L~Ls~n~-l~~l--~--~~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~ 160 (330)
T 1xku_A 93 PGA----FAPLVKLERLYLSKNQ-LKEL--P--EKMPKTLQELRVHENE-ITKVR-KSVFNGLNQMIVVELGTNP-LKSS 160 (330)
T ss_dssp TTT----TTTCTTCCEEECCSSC-CSBC--C--SSCCTTCCEEECCSSC-CCBBC-HHHHTTCTTCCEEECCSSC-CCGG
T ss_pred HHH----hcCCCCCCEEECCCCc-CCcc--C--hhhcccccEEECCCCc-ccccC-HhHhcCCccccEEECCCCc-CCcc
Confidence 111 2367899999999863 3311 0 0112799999999984 32111 2234578999999999875 332
Q ss_pred -HHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHH
Q 011445 258 -ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 336 (485)
Q Consensus 258 -~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 336 (485)
.....+..+++|++|+++++ .++... . ...++|++|++++|.+.......+. .+++|++|+++++. +......
T Consensus 161 ~~~~~~~~~l~~L~~L~l~~n-~l~~l~-~--~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~-l~~~~~~ 234 (330)
T 1xku_A 161 GIENGAFQGMKKLSYIRIADT-NITTIP-Q--GLPPSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNS-ISAVDNG 234 (330)
T ss_dssp GBCTTGGGGCTTCCEEECCSS-CCCSCC-S--SCCTTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSC-CCEECTT
T ss_pred CcChhhccCCCCcCEEECCCC-ccccCC-c--cccccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCc-CceeChh
Confidence 12234667899999999885 444211 1 1238999999999987765433433 48999999999886 5543332
Q ss_pred hHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCC
Q 011445 337 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 416 (485)
Q Consensus 337 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 416 (485)
.+. .+++|+.|+++++ .++.. ......+++|++|++++|. ++......+..... ....+.|+.++++++
T Consensus 235 ~~~-----~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~-~~~~~~l~~l~l~~N- 303 (330)
T 1xku_A 235 SLA-----NTPHLRELHLNNN-KLVKV--PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGY-NTKKASYSGVSLFSN- 303 (330)
T ss_dssp TGG-----GSTTCCEEECCSS-CCSSC--CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSC-CTTSCCCSEEECCSS-
T ss_pred hcc-----CCCCCCEEECCCC-cCccC--ChhhccCCCcCEEECCCCc-CCccChhhcCCccc-ccccccccceEeecC-
Confidence 333 5789999999997 55521 1112467899999999986 54433222221000 002578999999985
Q ss_pred CCCHHHHHhhcCCCCCCceEEeeccee
Q 011445 417 GLSVDSLRWVKRPSFRGLHWLGIGQTR 443 (485)
Q Consensus 417 ~l~~~~~~~l~~~~~~~L~~L~l~~~~ 443 (485)
.+....+..-....+++++.+++++|+
T Consensus 304 ~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 304 PVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccCccccccccceeEEEecccC
Confidence 454432221122367899999998874
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=1.9e-16 Score=154.93 Aligned_cols=179 Identities=17% Similarity=0.143 Sum_probs=96.6
Q ss_pred CCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCc
Q 011445 97 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 176 (485)
Q Consensus 97 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 176 (485)
.++|++|+++.+.+.... ...++|++|++++| .++. +..+..+++|++|+++++.. ..
T Consensus 110 ~~~L~~L~l~~n~l~~l~-----~~~~~L~~L~L~~n---------~l~~--lp~~~~l~~L~~L~l~~N~l------~~ 167 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKALS-----DLPPLLEYLGVSNN---------QLEK--LPELQNSSFLKIIDVDNNSL------KK 167 (454)
T ss_dssp CTTCCEEECCSSCCSCCC-----SCCTTCCEEECCSS---------CCSS--CCCCTTCTTCCEEECCSSCC------SC
T ss_pred cCCCcEEECCCCccCccc-----CCCCCCCEEECcCC---------CCCC--CcccCCCCCCCEEECCCCcC------cc
Confidence 356777777766554311 11257777777774 3332 22467778888888877541 11
Q ss_pred cCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCC
Q 011445 177 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 256 (485)
Q Consensus 177 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 256 (485)
+. ...++|+.|+++++ .+.. +.. +..+++|+.|+++++.. .. +....++|+.|++++|. +.
T Consensus 168 lp--------~~~~~L~~L~L~~n-~l~~--l~~-~~~l~~L~~L~l~~N~l-~~-----l~~~~~~L~~L~l~~n~-l~ 228 (454)
T 1jl5_A 168 LP--------DLPPSLEFIAAGNN-QLEE--LPE-LQNLPFLTAIYADNNSL-KK-----LPDLPLSLESIVAGNNI-LE 228 (454)
T ss_dssp CC--------CCCTTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSCC-SS-----CCCCCTTCCEEECCSSC-CS
T ss_pred cC--------CCcccccEEECcCC-cCCc--Ccc-ccCCCCCCEEECCCCcC-Cc-----CCCCcCcccEEECcCCc-CC
Confidence 21 12347777777775 2222 112 45567777777777642 11 11123567777777764 33
Q ss_pred HHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCC
Q 011445 257 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 328 (485)
Q Consensus 257 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 328 (485)
. +..+..+++|++|+++++ .+.. +.. ..++|+.|++++|.+... ....++|+.|+++++.
T Consensus 229 ~--lp~~~~l~~L~~L~l~~N-~l~~--l~~--~~~~L~~L~l~~N~l~~l-----~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 229 E--LPELQNLPFLTTIYADNN-LLKT--LPD--LPPSLEALNVRDNYLTDL-----PELPQSLTFLDVSENI 288 (454)
T ss_dssp S--CCCCTTCTTCCEEECCSS-CCSS--CCS--CCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSC
T ss_pred c--ccccCCCCCCCEEECCCC-cCCc--ccc--cccccCEEECCCCccccc-----CcccCcCCEEECcCCc
Confidence 2 123556777777777764 3332 111 235666666666654431 1123556666666554
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=2.3e-17 Score=155.31 Aligned_cols=269 Identities=14% Similarity=0.066 Sum_probs=127.6
Q ss_pred CCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCcc
Q 011445 98 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 177 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 177 (485)
+++++|+++++.+.......+ ..+++|++|++++| .++......+..+++|++|+++++.. ..+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~l------~~l 117 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNN---------KISKIHEKAFSPLRKLQKLYISKNHL------VEI 117 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS---------CCCEECGGGSTTCTTCCEEECCSSCC------CSC
T ss_pred CCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCC---------ccCccCHhHhhCcCCCCEEECCCCcC------Ccc
Confidence 455666665555443322222 23566666666653 33333334455566666666655431 111
Q ss_pred CcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHH-HHHHHcCCCCccEEEcccCCCCC
Q 011445 178 NDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLA-FHDLTGVPCALVEVRLLWCRLIT 256 (485)
Q Consensus 178 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~ 256 (485)
... ..++|++|+++++ .+.... ...+..+++|+.|+++++. +...+ .......+ +|+.|+++++. ++
T Consensus 118 ~~~-------~~~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~-l~ 185 (332)
T 2ft3_A 118 PPN-------LPSSLVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAK-LT 185 (332)
T ss_dssp CSS-------CCTTCCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSB-CS
T ss_pred Ccc-------ccccCCEEECCCC-ccCccC-HhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCC-CC
Confidence 111 1245666666554 222110 0113445666666666653 21100 00111122 56666666543 22
Q ss_pred HHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHH
Q 011445 257 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 336 (485)
Q Consensus 257 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 336 (485)
... ..-.++|++|+++++ .+.......+..+++|+.|++++|.+.......+. .+++|++|+++++. +.... .
T Consensus 186 ~l~---~~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~lp-~ 258 (332)
T 2ft3_A 186 GIP---KDLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNK-LSRVP-A 258 (332)
T ss_dssp SCC---SSSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSC-CCBCC-T
T ss_pred ccC---ccccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCc-CeecC-h
Confidence 100 001256777777663 44444344556667777777777755543222222 36777777777664 43111 1
Q ss_pred hHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHh-----hCCCCcEEEecCCCCCCHHHH--HHHHhhCCCCcCCCCCcE
Q 011445 337 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA-----AGIGIIDLCVRSCFYVTDASV--EALARKQPDQEKSKQLRR 409 (485)
Q Consensus 337 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~~L~~L~l~~~~~l~~~~~--~~l~~~~~~~~~~~~L~~ 409 (485)
.+ ..+++|+.|+++++ .++..+...+.. ..+.|+.|++.+|+ +....+ ..+. .+++|+.
T Consensus 259 ~l-----~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~-------~l~~L~~ 324 (332)
T 2ft3_A 259 GL-----PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFR-------CVTDRLA 324 (332)
T ss_dssp TG-----GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGT-------TBCCSTT
T ss_pred hh-----hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCccccc-------ccchhhh
Confidence 12 24667777777765 454432222211 13567788887776 321111 1111 4777888
Q ss_pred EeccCC
Q 011445 410 LDLCNC 415 (485)
Q Consensus 410 L~l~~c 415 (485)
++++++
T Consensus 325 l~l~~n 330 (332)
T 2ft3_A 325 IQFGNY 330 (332)
T ss_dssp EEC---
T ss_pred hhcccc
Confidence 888775
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=2e-17 Score=170.15 Aligned_cols=81 Identities=20% Similarity=0.084 Sum_probs=58.6
Q ss_pred hhccccccCCCCccccccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCC
Q 011445 77 IGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCH 156 (485)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (485)
+.+.+..+-...+....|.++++|++|+|+.|.++......+ ..+++|++|+|++| .++......+..++
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~Ls~N---------~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGN---------PIQSLALGAFSGLS 124 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTC---------CCCEECGGGGTTCT
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEEccCC---------cCCCCCHHHhcCCC
Confidence 555666665556656778999999999999888876544344 45899999999995 44444445567778
Q ss_pred CcceEEeCCcc
Q 011445 157 HLTGLSLTRCR 167 (485)
Q Consensus 157 ~L~~L~l~~~~ 167 (485)
+|++|+++++.
T Consensus 125 ~L~~L~Ls~N~ 135 (635)
T 4g8a_A 125 SLQKLVAVETN 135 (635)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEECCCCc
Confidence 88888887753
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=1.3e-17 Score=156.97 Aligned_cols=296 Identities=12% Similarity=0.053 Sum_probs=183.2
Q ss_pred CccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccC
Q 011445 99 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN 178 (485)
Q Consensus 99 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 178 (485)
+++.++++.+.+.... . .-.++|++|++++| .++......+..+++|++|+++++. +.
T Consensus 34 ~l~~l~~~~~~l~~ip-~---~~~~~l~~L~l~~n---------~i~~~~~~~~~~l~~L~~L~L~~n~---------l~ 91 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP-K---EISPDTTLLDLQNN---------DISELRKDDFKGLQHLYALVLVNNK---------IS 91 (332)
T ss_dssp ETTEEECCSSCCSSCC-S---CCCTTCCEEECCSS---------CCCEECTTTTTTCTTCCEEECCSSC---------CC
T ss_pred cCCEEECCCCCccccC-C---CCCCCCeEEECCCC---------cCCccCHhHhhCCCCCcEEECCCCc---------cC
Confidence 6888888876654321 1 12478999999995 4555545567889999999998864 22
Q ss_pred cHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHH
Q 011445 179 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE 258 (485)
Q Consensus 179 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 258 (485)
...... ...+++|+.|+++++ .++.. .. ...++|+.|+++++. +.... ...+..+++|+.|+++++. ++..
T Consensus 92 ~~~~~~-~~~l~~L~~L~L~~n-~l~~l--~~--~~~~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~ 162 (332)
T 2ft3_A 92 KIHEKA-FSPLRKLQKLYISKN-HLVEI--PP--NLPSSLVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMGGNP-LENS 162 (332)
T ss_dssp EECGGG-STTCTTCCEEECCSS-CCCSC--CS--SCCTTCCEEECCSSC-CCCCC-SGGGSSCSSCCEEECCSCC-CBGG
T ss_pred ccCHhH-hhCcCCCCEEECCCC-cCCcc--Cc--cccccCCEEECCCCc-cCccC-HhHhCCCccCCEEECCCCc-cccC
Confidence 221111 236789999999986 33311 10 112799999999885 22111 1234568999999999875 3321
Q ss_pred --HHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHH
Q 011445 259 --TVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 336 (485)
Q Consensus 259 --~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 336 (485)
....+..+ +|+.|+++++ .++.. .. ...++|++|++++|.+.......+. .+++|+.|+++++. +......
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n-~l~~l--~~-~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~-l~~~~~~ 235 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEA-KLTGI--PK-DLPETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQ-IRMIENG 235 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSS-BCSSC--CS-SSCSSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSC-CCCCCTT
T ss_pred CCCcccccCC-ccCEEECcCC-CCCcc--Cc-cccCCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCc-CCcCChh
Confidence 11223344 8999999885 44431 11 1237899999999877654433333 47899999999886 5443322
Q ss_pred hHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCC
Q 011445 337 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCI 416 (485)
Q Consensus 337 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 416 (485)
.+. .+++|+.|+++++ .++... .....+++|+.|++++|. ++......+..... ....++|+.|++.++
T Consensus 236 ~~~-----~l~~L~~L~L~~N-~l~~lp--~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~-~~~~~~l~~L~l~~N- 304 (332)
T 2ft3_A 236 SLS-----FLPTLRELHLDNN-KLSRVP--AGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGF-GVKRAYYNGISLFNN- 304 (332)
T ss_dssp GGG-----GCTTCCEEECCSS-CCCBCC--TTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSC-CSSSCCBSEEECCSS-
T ss_pred Hhh-----CCCCCCEEECCCC-cCeecC--hhhhcCccCCEEECCCCC-CCccChhHcccccc-ccccccccceEeecC-
Confidence 233 5789999999986 565321 113467999999999986 55433332222100 002578999999995
Q ss_pred CCCHHHHHhhcCCCCCCceEEeeccee
Q 011445 417 GLSVDSLRWVKRPSFRGLHWLGIGQTR 443 (485)
Q Consensus 417 ~l~~~~~~~l~~~~~~~L~~L~l~~~~ 443 (485)
.++...+..-....+++|+.+++++|.
T Consensus 305 ~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 PVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccCcccccccchhhhhhccccc
Confidence 455322222222368899999998875
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=7e-16 Score=146.47 Aligned_cols=141 Identities=16% Similarity=0.083 Sum_probs=66.3
Q ss_pred CCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHH--HhcCC
Q 011445 240 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSIL--AQGNL 317 (485)
Q Consensus 240 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l--~~~~~ 317 (485)
.+++|++|+++++. +.......+..+++|++|+++++ .+.......+..+++|+.|++++|.+.......+ ...++
T Consensus 172 ~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 172 GLTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp TCCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred CCCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 34555555555543 22222223445566666666553 3332222223345666666666654443211111 12345
Q ss_pred CccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCC
Q 011445 318 PIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYV 386 (485)
Q Consensus 318 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l 386 (485)
.++.+++.++. +.+..+..+... -..+++|+.|+++++ .++.... .+...+++|++|++++|+..
T Consensus 250 ~l~~l~L~~~~-l~~~~l~~l~~~-l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 250 LIKKFTFRNVK-ITDESLFQVMKL-LNQISGLLELEFSRN-QLKSVPD-GIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCEEEEESCB-CCHHHHHHHHHH-HHTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred hhhcccccccc-ccCcchhhhHHH-HhcccCCCEEECCCC-CCCccCH-HHHhcCCCCCEEEeeCCCcc
Confidence 56666666554 555444333210 024566777777665 4442111 11234577777777777633
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=8e-16 Score=150.59 Aligned_cols=206 Identities=17% Similarity=0.138 Sum_probs=92.5
Q ss_pred cccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCc
Q 011445 94 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 173 (485)
Q Consensus 94 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 173 (485)
+.++++|++|+|+.|.+.......+ ..+++|++|+|++| .++......+..+++|+.|+++++.
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~L~~N~------ 147 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAF-NGLANLNTLELFDN---------RLTTIPNGAFVYLSKLKELWLRNNP------ 147 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGG-TTCSSCCEEECCSS---------CCSSCCTTTSCSCSSCCEEECCSCC------
T ss_pred hhCCCCCCEEECCCCcCCccChhhc-cCCccCCEEECCCC---------cCCeeCHhHhhccccCceeeCCCCc------
Confidence 3555666666666555544332223 23566666666653 3333333334555666666665543
Q ss_pred cCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCC
Q 011445 174 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 253 (485)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 253 (485)
+..+... ....+++|+.|+++++..+...... .+..+++|+.|+++++ .
T Consensus 148 i~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n--------------------------~ 196 (440)
T 3zyj_A 148 IESIPSY----AFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC--------------------------N 196 (440)
T ss_dssp CCEECTT----TTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS--------------------------C
T ss_pred ccccCHH----HhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC--------------------------c
Confidence 1111111 1123455555555554332211100 1233445555555444 2
Q ss_pred CCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChh
Q 011445 254 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 333 (485)
Q Consensus 254 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 333 (485)
++. +..+..+++|+.|+++++ .++......+..+++|+.|++++|.+.......+. .+++|+.|+++++. ++..
T Consensus 197 -l~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~ 270 (440)
T 3zyj_A 197 -LRE--IPNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAHNN-LTLL 270 (440)
T ss_dssp -CSS--CCCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTTSC-CCCC
T ss_pred -Ccc--ccccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCCCC-CCcc
Confidence 111 112334555666666553 34433333444556666666666554443222222 25566666666554 3322
Q ss_pred hHHhHhhhcCCCCCCccEEecCCC
Q 011445 334 GISHLLCVGGTISQSLTTLDLGYM 357 (485)
Q Consensus 334 ~~~~l~~~~~~~~~~L~~L~l~~~ 357 (485)
....+ ..+++|+.|+++++
T Consensus 271 ~~~~~-----~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 271 PHDLF-----TPLHHLERIHLHHN 289 (440)
T ss_dssp CTTTT-----SSCTTCCEEECCSS
T ss_pred ChhHh-----ccccCCCEEEcCCC
Confidence 21111 23556666666654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=8.3e-16 Score=151.05 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=58.0
Q ss_pred CCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCc
Q 011445 240 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 319 (485)
Q Consensus 240 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L 319 (485)
.+++|+.|+++++. +.. +..+..+++|+.|+++++ .++......+..+++|+.|++++|.+.......+. .+++|
T Consensus 194 ~l~~L~~L~L~~n~-l~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 268 (452)
T 3zyi_A 194 GLFNLKYLNLGMCN-IKD--MPNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASL 268 (452)
T ss_dssp TCTTCCEEECTTSC-CSS--CCCCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTC
T ss_pred CCCCCCEEECCCCc-ccc--cccccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCC
Confidence 34555555555543 221 122445667777777663 44444444556667777777777665543322222 36677
Q ss_pred cEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCC
Q 011445 320 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMP 358 (485)
Q Consensus 320 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 358 (485)
+.|+++++. ++......+ ..+++|+.|++++++
T Consensus 269 ~~L~L~~N~-l~~~~~~~~-----~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 VELNLAHNN-LSSLPHDLF-----TPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECCSSC-CSCCCTTSS-----TTCTTCCEEECCSSC
T ss_pred CEEECCCCc-CCccChHHh-----ccccCCCEEEccCCC
Confidence 777777664 432221111 245677777777643
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.55 E-value=1.6e-17 Score=154.87 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=93.9
Q ss_pred CCccEEEecccCCCh--HHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccC
Q 011445 98 FNLRSLSLVLDVITD--ELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFK 175 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 175 (485)
.++++|+++++.+.. ..+..+ ..+++|++|+++++ +.+.......+..+++|++|+++++.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~--------n~l~~~~p~~l~~l~~L~~L~Ls~n~-------- 112 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGI--------NNLVGPIPPAIAKLTQLHYLYITHTN-------- 112 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEE--------TTEESCCCGGGGGCTTCSEEEEEEEC--------
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCC--------CcccccCChhHhcCCCCCEEECcCCe--------
Confidence 578999998877764 333344 34899999999853 33444444557788889999998764
Q ss_pred ccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCC-CccEEEcccCCC
Q 011445 176 RVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPC-ALVEVRLLWCRL 254 (485)
Q Consensus 176 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 254 (485)
+....... ...+++|++|+++++. +... +...+..+++|+.|+++++.. ... +......++ .|+.|+++++.
T Consensus 113 -l~~~~p~~-~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~L~L~~N~l-~~~-~p~~l~~l~~~L~~L~L~~N~- 185 (313)
T 1ogq_A 113 -VSGAIPDF-LSQIKTLVTLDFSYNA-LSGT-LPPSISSLPNLVGITFDGNRI-SGA-IPDSYGSFSKLFTSMTISRNR- 185 (313)
T ss_dssp -CEEECCGG-GGGCTTCCEEECCSSE-EESC-CCGGGGGCTTCCEEECCSSCC-EEE-CCGGGGCCCTTCCEEECCSSE-
T ss_pred -eCCcCCHH-HhCCCCCCEEeCCCCc-cCCc-CChHHhcCCCCCeEECcCCcc-cCc-CCHHHhhhhhcCcEEECcCCe-
Confidence 22111111 2356788888887752 2110 111244567777777777641 100 011112233 55555555543
Q ss_pred CCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCC
Q 011445 255 ITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI 304 (485)
Q Consensus 255 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l 304 (485)
+.......+..++ |+.|+++++ .+.......+..+++|+.|++++|.+
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred eeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCEEECCCCce
Confidence 2111112233333 555555552 33322233344455555555555543
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=1.4e-15 Score=142.00 Aligned_cols=260 Identities=15% Similarity=0.081 Sum_probs=126.5
Q ss_pred CccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccC
Q 011445 99 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVN 178 (485)
Q Consensus 99 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 178 (485)
.++..+++.+.+. ..+..+...+++|++|++++| .++......+..+++|+.|+++++. +.
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n---------~l~~~~~~~~~~l~~L~~L~Ls~n~---------l~ 71 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGN---------PLSQISAADLAPFTKLELLNLSSNV---------LY 71 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTS---------CCCCCCHHHHTTCTTCCEEECTTSC---------CE
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCC---------ccCcCCHHHhhCCCcCCEEECCCCc---------CC
Confidence 3444555544442 233444455677788887774 4444444556677777777777654 11
Q ss_pred cHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHH
Q 011445 179 DMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSE 258 (485)
Q Consensus 179 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 258 (485)
.... ...+++|+.|+++++ .++. ....++|+.|+++++. +.... ...+++|+.|+++++. ++..
T Consensus 72 ~~~~---~~~l~~L~~L~Ls~n-~l~~------l~~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~N~-l~~~ 135 (317)
T 3o53_A 72 ETLD---LESLSTLRTLDLNNN-YVQE------LLVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNK-ITML 135 (317)
T ss_dssp EEEE---ETTCTTCCEEECCSS-EEEE------EEECTTCCEEECCSSC-CSEEE----ECCCSSCEEEECCSSC-CCSG
T ss_pred cchh---hhhcCCCCEEECcCC-cccc------ccCCCCcCEEECCCCc-cCCcC----ccccCCCCEEECCCCC-CCCc
Confidence 1110 235667777777765 2221 1123667777776663 21100 1124556666666543 3322
Q ss_pred HHHHhhCCCCCCEEEccCCCCCcHHHhhcc-cCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHh
Q 011445 259 TVKKLASSRNLEVLDLGGCKSIADTCLRSI-SCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISH 337 (485)
Q Consensus 259 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 337 (485)
....+..+++|++|+++++ .+.......+ ..+++|++|++++|.++... ... .+++|+.|+++++. ++.....
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~-~l~~L~~L~Ls~N~-l~~l~~~- 209 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQV-VFAKLKTLDLSSNK-LAFMGPE- 209 (317)
T ss_dssp GGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCC-CCTTCCEEECCSSC-CCEECGG-
T ss_pred cchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccc--ccc-ccccCCEEECCCCc-CCcchhh-
Confidence 2223344566666666663 4443333333 24566666666666554331 111 25566666666554 3321111
Q ss_pred HhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccC
Q 011445 338 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN 414 (485)
Q Consensus 338 l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 414 (485)
+ ..+++|+.|+++++ .++.. ......+++|+.|++++|+ ++...+..... .+++|+.+++.+
T Consensus 210 ~-----~~l~~L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~------~~~~L~~l~l~~ 271 (317)
T 3o53_A 210 F-----QSAAGVTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGNG-FHCGTLRDFFS------KNQRVQTVAKQT 271 (317)
T ss_dssp G-----GGGTTCSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTCC-CBHHHHHHHHH------TCHHHHHHHHHH
T ss_pred h-----cccCcccEEECcCC-cccch--hhHhhcCCCCCEEEccCCC-ccCcCHHHHHh------ccccceEEECCC
Confidence 1 13456666666654 34321 1111234556666666554 33222222222 355555555543
No 62
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=3.3e-15 Score=146.23 Aligned_cols=323 Identities=14% Similarity=0.079 Sum_probs=161.0
Q ss_pred ccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHHH-hhhhccccccCCCCccccccccC-CCccEE
Q 011445 26 QLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLI-RRIGRNLMETVQPPILTSSYYSS-FNLRSL 103 (485)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L 103 (485)
++++|++.++.+.. +.. .|..++.+++++.....++... .++.+.+.++-...+ ... ++|++|
T Consensus 72 ~l~~L~l~~~~l~~-lp~---------~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l-----~~~~~~L~~L 136 (454)
T 1jl5_A 72 QAHELELNNLGLSS-LPE---------LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL-----SDLPPLLEYL 136 (454)
T ss_dssp TCSEEECTTSCCSC-CCS---------CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCC-----CSCCTTCCEE
T ss_pred CCCEEEecCCcccc-CCC---------CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcc-----cCCCCCCCEE
Confidence 46777777655422 111 3445777777665544433221 113333333321221 112 578888
Q ss_pred EecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcHhHH
Q 011445 104 SLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMF 183 (485)
Q Consensus 104 ~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 183 (485)
++++|.+... +.+ ..+++|++|++++|. ++.. . ...++|+.|+++++.. ..+..
T Consensus 137 ~L~~n~l~~l--p~~-~~l~~L~~L~l~~N~---------l~~l--p--~~~~~L~~L~L~~n~l------~~l~~---- 190 (454)
T 1jl5_A 137 GVSNNQLEKL--PEL-QNSSFLKIIDVDNNS---------LKKL--P--DLPPSLEFIAAGNNQL------EELPE---- 190 (454)
T ss_dssp ECCSSCCSSC--CCC-TTCTTCCEEECCSSC---------CSCC--C--CCCTTCCEEECCSSCC------SSCCC----
T ss_pred ECcCCCCCCC--ccc-CCCCCCCEEECCCCc---------Cccc--C--CCcccccEEECcCCcC------CcCcc----
Confidence 8887776542 233 347888888888853 2210 0 1235788888877541 11221
Q ss_pred HHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHh
Q 011445 184 LLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKL 263 (485)
Q Consensus 184 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 263 (485)
...+++|+.|+++++. ++. + ....++|+.|+++++. +. .+.. ...+++|+.|+++++. +... .
T Consensus 191 --~~~l~~L~~L~l~~N~-l~~--l---~~~~~~L~~L~l~~n~-l~--~lp~-~~~l~~L~~L~l~~N~-l~~l--~-- 253 (454)
T 1jl5_A 191 --LQNLPFLTAIYADNNS-LKK--L---PDLPLSLESIVAGNNI-LE--ELPE-LQNLPFLTTIYADNNL-LKTL--P-- 253 (454)
T ss_dssp --CTTCTTCCEEECCSSC-CSS--C---CCCCTTCCEEECCSSC-CS--SCCC-CTTCTTCCEEECCSSC-CSSC--C--
T ss_pred --ccCCCCCCEEECCCCc-CCc--C---CCCcCcccEEECcCCc-CC--cccc-cCCCCCCCEEECCCCc-CCcc--c--
Confidence 2356778888887753 221 1 1122578888887774 22 1111 3456778888887754 2210 0
Q ss_pred hCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcC
Q 011445 264 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG 343 (485)
Q Consensus 264 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 343 (485)
...++|+.|+++++ .+.. +.. ..++|+.|++++|.+.... ...++|+.|+++++. +.. +.
T Consensus 254 ~~~~~L~~L~l~~N-~l~~--l~~--~~~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N~-l~~-----i~---- 313 (454)
T 1jl5_A 254 DLPPSLEALNVRDN-YLTD--LPE--LPQSLTFLDVSENIFSGLS-----ELPPNLYYLNASSNE-IRS-----LC---- 313 (454)
T ss_dssp SCCTTCCEEECCSS-CCSC--CCC--CCTTCCEEECCSSCCSEES-----CCCTTCCEEECCSSC-CSE-----EC----
T ss_pred ccccccCEEECCCC-cccc--cCc--ccCcCCEEECcCCccCccc-----CcCCcCCEEECcCCc-CCc-----cc----
Confidence 12367888888774 3332 111 2367788888777665421 113577778777765 332 22
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCH---
Q 011445 344 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSV--- 420 (485)
Q Consensus 344 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~--- 420 (485)
...++|+.|+++++ .++. +...+++|+.|++++|. ++. +.. .+++|+.|+++++ .++.
T Consensus 314 ~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~L~~N~-l~~-----lp~------~l~~L~~L~L~~N-~l~~l~~ 374 (454)
T 1jl5_A 314 DLPPSLEELNVSNN-KLIE-----LPALPPRLERLIASFNH-LAE-----VPE------LPQNLKQLHVEYN-PLREFPD 374 (454)
T ss_dssp CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC-CSC-----CCC------CCTTCCEEECCSS-CCSSCCC
T ss_pred CCcCcCCEEECCCC-cccc-----ccccCCcCCEEECCCCc-ccc-----ccc------hhhhccEEECCCC-CCCcCCC
Confidence 12257777877775 4443 11235677888877774 431 111 2567778877774 4443
Q ss_pred --HHHHhhcC--------CCCCCceEEeecceecc
Q 011445 421 --DSLRWVKR--------PSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 421 --~~~~~l~~--------~~~~~L~~L~l~~~~~~ 445 (485)
..+..+.. ..+++|+.|++++|++.
T Consensus 375 ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 375 IPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CCTTCCEEECCC-----------------------
T ss_pred ChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 11111100 01267888888888866
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.52 E-value=6.1e-16 Score=143.83 Aligned_cols=209 Identities=17% Similarity=0.137 Sum_probs=104.9
Q ss_pred ccccCCCccEEEecccCCChHH--HHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccC
Q 011445 93 SYYSSFNLRSLSLVLDVITDEL--LITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH 170 (485)
Q Consensus 93 ~~~~~~~L~~L~L~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 170 (485)
.+.++++|++|+++.+.+.... ...+. .+++|++|++++| .++.. ...+..+++|++|+++++.
T Consensus 47 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n---------~i~~l-~~~~~~l~~L~~L~l~~n~--- 112 (306)
T 2z66_A 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFN---------GVITM-SSNFLGLEQLEHLDFQHSN--- 112 (306)
T ss_dssp TTTTCTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSC---------SEEEE-EEEEETCTTCCEEECTTSE---
T ss_pred HhhccccCCEEECCCCccCcccCcccccc-cccccCEEECCCC---------ccccC-hhhcCCCCCCCEEECCCCc---
Confidence 3466778888888877765321 12232 3788888888875 22221 1235567777888777653
Q ss_pred CCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcc
Q 011445 171 QGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLL 250 (485)
Q Consensus 171 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 250 (485)
+...........+++|+.|+++++. +... ....+..+++|+.|+++++.
T Consensus 113 ------l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~----------------------- 161 (306)
T 2z66_A 113 ------LKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNS----------------------- 161 (306)
T ss_dssp ------EESSTTTTTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCE-----------------------
T ss_pred ------ccccccchhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCc-----------------------
Confidence 1111100112245666666666642 1110 01112334555555555442
Q ss_pred cCCCCCH-HHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 011445 251 WCRLITS-ETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKR 329 (485)
Q Consensus 251 ~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 329 (485)
+.+ .....+..+++|++|+++++ .++......+..+++|++|++++|.+.......+ ..+++|+.|+++++.
T Consensus 162 ----l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~- 234 (306)
T 2z66_A 162 ----FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNH- 234 (306)
T ss_dssp ----EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEECTTSC-
T ss_pred ----cccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhc-cCcccCCEeECCCCC-
Confidence 111 01112334566666666663 4443333445566677777777665544322222 235667777777664
Q ss_pred CChhhHHhHhhhcCCCCCCccEEecCCC
Q 011445 330 VTDKGISHLLCVGGTISQSLTTLDLGYM 357 (485)
Q Consensus 330 l~~~~~~~l~~~~~~~~~~L~~L~l~~~ 357 (485)
+.......+. ...++|+.|+++++
T Consensus 235 l~~~~~~~~~----~~~~~L~~L~L~~N 258 (306)
T 2z66_A 235 IMTSKKQELQ----HFPSSLAFLNLTQN 258 (306)
T ss_dssp CCBCSSSSCC----CCCTTCCEEECTTC
T ss_pred CcccCHHHHH----hhhccCCEEEccCC
Confidence 4332222222 11246777777765
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.51 E-value=6.2e-16 Score=142.19 Aligned_cols=38 Identities=18% Similarity=-0.109 Sum_probs=18.2
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCC
Q 011445 345 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 384 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 384 (485)
.+++|+.|+++++ .++......+ ..+++|+.|++++|+
T Consensus 199 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 199 DLGRLMTLYLFAN-NLSALPTEAL-APLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSS-CCSCCCHHHH-TTCTTCCEEECCSSC
T ss_pred CcccccEeeCCCC-cCCcCCHHHc-ccCcccCEEeccCCC
Confidence 3455555555554 3333222222 345556666666554
No 65
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=4.7e-14 Score=133.92 Aligned_cols=210 Identities=20% Similarity=0.208 Sum_probs=149.7
Q ss_pred CCCccEEEcccCCCCCHHHHHHhhC-----CCCCCEEEccCCCCCcHHHhhccc-CCCCCCEEEcCCCCCChHHHHHHHh
Q 011445 241 PCALVEVRLLWCRLITSETVKKLAS-----SRNLEVLDLGGCKSIADTCLRSIS-CLRKLTALNLTGADITDSGLSILAQ 314 (485)
Q Consensus 241 ~~~L~~L~l~~~~~l~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~ 314 (485)
.+.|+.|++++|. +++.+...+.. .++|++|+++++ .+++.++..+. .+++|++|++++|.+++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 4679999999876 77776665542 379999999985 68777766654 4578999999999999988777653
Q ss_pred ----cCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCcEEEecCCCCCC
Q 011445 315 ----GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVT 387 (485)
Q Consensus 315 ----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~ 387 (485)
.+++|++|++++|. +++.+...++... ...++|++|++++| .+++.++..+.. .+++|++|++++|. ++
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L-~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGL-AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHH-HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHH-hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 35789999999986 8887776664211 24788999999997 788888766653 46789999999985 99
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCC---ceEEe--ecceeccCCCchhHHHHhhhCC
Q 011445 388 DASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRG---LHWLG--IGQTRLASKGNPVITEIHNERP 460 (485)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~---L~~L~--l~~~~~~~~~~~~~~~~~~~~~ 460 (485)
+.+...++.+.. .+++|++|++++| .+++.++..+.....+. |+.+. +..+.+.......+..+.+..+
T Consensus 225 ~~g~~~l~~~L~---~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~~l~~l~~~~~ 298 (372)
T 3un9_A 225 DTAALALARAAR---EHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLN 298 (372)
T ss_dssp HHHHHHHHHHHH---HCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHH---hCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHHHHHHHHHHhh
Confidence 988777766433 4789999999995 79998888776322223 77777 7776654222233344444433
No 66
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.50 E-value=2e-13 Score=129.62 Aligned_cols=195 Identities=19% Similarity=0.236 Sum_probs=145.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHH---c-CCCCccEEEcccCCCCCHHHHHHhh-CCCCCCEEEccCCCCCcHHHhhccc
Q 011445 215 CHSLKKFEVRSASFLSDLAFHDLT---G-VPCALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSIS 289 (485)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~---~-~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~l~~l~ 289 (485)
.+.|+.|+++++. ++......+. . .+++|++|++++|. +++.++..+. .+++|+.|+++++ .+++.+...++
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 4789999999986 6765554433 2 34699999999976 7888877766 3678999999995 78887766653
Q ss_pred -----CCCCCCEEEcCCCCCChHHHHHHH---hcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCC
Q 011445 290 -----CLRKLTALNLTGADITDSGLSILA---QGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGIS 361 (485)
Q Consensus 290 -----~~~~L~~L~l~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~ 361 (485)
..++|++|++++|.+++.+...+. ..+++|++|++++|. +++.+...++... ...++|++|++++| .++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L-~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQL-DRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHG-GGCSCCCEEECCSS-CCC
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHH-hcCCCcCeEECCCC-CCC
Confidence 478999999999999988776654 357899999999987 8888766654221 24579999999997 899
Q ss_pred HHHHHHHHh---hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCC--CcEEe--ccCCCCCCHH
Q 011445 362 DDGILTIAA---AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQ--LRRLD--LCNCIGLSVD 421 (485)
Q Consensus 362 ~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~--L~~L~--l~~c~~l~~~ 421 (485)
+.+...+.. .+++|++|++++|. +++.+...+..... ... |+.+. +.+ ..+++.
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~----~~~~~L~~l~~ll~~-~~~~~~ 285 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGG----AAEGGARVVVSLTEG-TAVSEY 285 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC----------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhc----CCCccchhhHhhhcC-CccCHH
Confidence 988777654 46899999999995 99999998887432 221 77776 555 455554
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.49 E-value=3.6e-15 Score=146.50 Aligned_cols=157 Identities=16% Similarity=0.133 Sum_probs=103.1
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCC
Q 011445 214 SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRK 293 (485)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~ 293 (485)
.+++|+.|+++++. +.... ...+..+++|+.|+++++..+.......+..+++|+.|+++++ .+.. +..+..+++
T Consensus 145 ~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~l~~ 219 (452)
T 3zyi_A 145 YLSKLRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD--MPNLTPLVG 219 (452)
T ss_dssp SCTTCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSS--CCCCTTCTT
T ss_pred ccCCCCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccc--ccccccccc
Confidence 34555555555553 11000 0122356677777777665554443345667899999999985 5543 345678899
Q ss_pred CCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 011445 294 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 373 (485)
Q Consensus 294 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 373 (485)
|+.|++++|.+.......+. .+++|+.|+++++. +.......+. .+++|+.|+++++ .++...... ...++
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~-~~~l~ 290 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQ-VSLIERNAFD-----GLASLVELNLAHN-NLSSLPHDL-FTPLR 290 (452)
T ss_dssp CCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSC-CCEECTTTTT-----TCTTCCEEECCSS-CCSCCCTTS-STTCT
T ss_pred ccEEECcCCcCcccCccccc-CccCCCEEEeCCCc-CceECHHHhc-----CCCCCCEEECCCC-cCCccChHH-hcccc
Confidence 99999999987765433333 48999999999886 5543333333 6789999999986 565432222 23578
Q ss_pred CCcEEEecCCC
Q 011445 374 GIIDLCVRSCF 384 (485)
Q Consensus 374 ~L~~L~l~~~~ 384 (485)
+|+.|++++|+
T Consensus 291 ~L~~L~L~~Np 301 (452)
T 3zyi_A 291 YLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEccCCC
Confidence 99999999987
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.49 E-value=2.9e-15 Score=146.67 Aligned_cols=134 Identities=14% Similarity=0.116 Sum_probs=95.3
Q ss_pred CCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCc
Q 011445 240 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 319 (485)
Q Consensus 240 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L 319 (485)
.+++|+.|+++++..+.......+..+++|++|+++++ .++. +..+..+++|+.|++++|.+.......+. .+++|
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L 233 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHL 233 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSS--CCCCTTCSSCCEEECTTSCCCEECTTTTT-TCTTC
T ss_pred hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcc--ccccCCCcccCEEECCCCccCccChhhhc-cCccC
Confidence 45677777777655444433345677899999999985 4542 34567889999999999987765433333 48999
Q ss_pred cEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCC
Q 011445 320 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFY 385 (485)
Q Consensus 320 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 385 (485)
+.|+++++. +.......+. .+++|+.|+++++ .++...... ...+++|+.|++++|+.
T Consensus 234 ~~L~L~~n~-l~~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 234 QKLWMIQSQ-IQVIERNAFD-----NLQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEEECTTCC-CCEECTTSST-----TCTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSCE
T ss_pred CEEECCCCc-eeEEChhhhc-----CCCCCCEEECCCC-CCCccChhH-hccccCCCEEEcCCCCc
Confidence 999999886 5544333333 6789999999996 665433222 24578999999999873
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.48 E-value=1.5e-15 Score=141.13 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=51.3
Q ss_pred CCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcH-HHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCc
Q 011445 241 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIAD-TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 319 (485)
Q Consensus 241 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L 319 (485)
+++|+.|+++++. +.......+..+++|++|+++++ .+.+ .....+..+++|++|++++|.+.......+. .+++|
T Consensus 125 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L 201 (306)
T 2z66_A 125 LRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSL 201 (306)
T ss_dssp CTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTC
T ss_pred ccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc-CCCCC
Confidence 4455555555433 21111222445666777777663 3332 1223345566667777666655543222222 35666
Q ss_pred cEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCC
Q 011445 320 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYM 357 (485)
Q Consensus 320 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~ 357 (485)
+.|+++++. +.......+. .+++|+.|+++++
T Consensus 202 ~~L~L~~N~-l~~~~~~~~~-----~l~~L~~L~L~~N 233 (306)
T 2z66_A 202 QVLNMSHNN-FFSLDTFPYK-----CLNSLQVLDYSLN 233 (306)
T ss_dssp CEEECTTSC-CSBCCSGGGT-----TCTTCCEEECTTS
T ss_pred CEEECCCCc-cCccChhhcc-----CcccCCEeECCCC
Confidence 666666554 3322111111 3455666666554
No 70
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.47 E-value=7.1e-14 Score=115.37 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=55.8
Q ss_pred CccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhh---CCCCcEEEecCCCCCCHHHHHHH
Q 011445 318 PIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYVTDASVEAL 394 (485)
Q Consensus 318 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l 394 (485)
.|++|++++|. +++.++..+. .+++|++|+|++|..++|.++..+... +++|++|++++|..++|.++..+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 45666666665 6666655554 456666666666666666666666531 34566666666666666666665
Q ss_pred HhhCCCCcCCCCCcEEeccCCCCCCHHH
Q 011445 395 ARKQPDQEKSKQLRRLDLCNCIGLSVDS 422 (485)
Q Consensus 395 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 422 (485)
.. +++|+.|++++|+++++.+
T Consensus 136 ~~-------~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 136 HH-------FRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp GG-------CTTCCEEEEESCTTCCCHH
T ss_pred hc-------CCCCCEEECCCCCCCCchH
Confidence 54 6666666666666666544
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=5.5e-15 Score=135.85 Aligned_cols=184 Identities=17% Similarity=0.112 Sum_probs=100.7
Q ss_pred CCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCcc
Q 011445 241 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 320 (485)
Q Consensus 241 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~ 320 (485)
+++|+.|+++++. ++......+..+++|++|+++++..+.......+..+++|++|++++|.+.......+ ..+++|+
T Consensus 55 ~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~ 132 (285)
T 1ozn_A 55 CRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF-RGLAALQ 132 (285)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCC
T ss_pred CCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh-hCCcCCC
Confidence 3444444444432 2222222344556666666666422433333445556667777776665543322222 2356677
Q ss_pred EEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCC
Q 011445 321 NLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPD 400 (485)
Q Consensus 321 ~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 400 (485)
+|+++++. +.......+ ..+++|+.|+++++ .++......+ ..+++|+.|++++|. ++......+.
T Consensus 133 ~L~l~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~----- 198 (285)
T 1ozn_A 133 YLYLQDNA-LQALPDDTF-----RDLGNLTHLFLHGN-RISSVPERAF-RGLHSLDRLLLHQNR-VAHVHPHAFR----- 198 (285)
T ss_dssp EEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECTTTTT-----
T ss_pred EEECCCCc-ccccCHhHh-----ccCCCccEEECCCC-cccccCHHHh-cCccccCEEECCCCc-ccccCHhHcc-----
Confidence 77776654 332221112 24567777777775 4443221112 246778888887775 4433222222
Q ss_pred CcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 401 QEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 401 ~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
.+++|+.|+++++ .++......+. .+++|+.|++++|++.
T Consensus 199 --~l~~L~~L~l~~n-~l~~~~~~~~~--~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 199 --DLGRLMTLYLFAN-NLSALPTEALA--PLRALQYLRLNDNPWV 238 (285)
T ss_dssp --TCTTCCEEECCSS-CCSCCCHHHHT--TCTTCCEEECCSSCEE
T ss_pred --CcccccEeeCCCC-cCCcCCHHHcc--cCcccCEEeccCCCcc
Confidence 4788888888885 66654444454 6788889999888876
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.46 E-value=4e-15 Score=138.87 Aligned_cols=241 Identities=20% Similarity=0.193 Sum_probs=168.1
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCcc
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 174 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 174 (485)
..+++|++|+++++.+.......+ ..+++|++|++++| .++... .+..+++|++|+++++.
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n---------~l~~~~--~~~~l~~L~~L~Ls~n~------- 91 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSN---------VLYETL--DLESLSTLRTLDLNNNY------- 91 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTS---------CCEEEE--EETTCTTCCEEECCSSE-------
T ss_pred ccCCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCC---------cCCcch--hhhhcCCCCEEECcCCc-------
Confidence 347799999999988877655555 45999999999996 333221 27889999999999875
Q ss_pred CccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCC
Q 011445 175 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 254 (485)
Q Consensus 175 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 254 (485)
++... ..++|+.|+++++ .++... ...+++|+.|+++++. +.... ......+++|+.|+++++.
T Consensus 92 --l~~l~------~~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~- 155 (317)
T 3o53_A 92 --VQELL------VGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANNK-ITMLR-DLDEGCRSRVQYLDLKLNE- 155 (317)
T ss_dssp --EEEEE------ECTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSSC-CCSGG-GBCTGGGSSEEEEECTTSC-
T ss_pred --ccccc------CCCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCCC-CCCcc-chhhhccCCCCEEECCCCC-
Confidence 22211 3489999999986 333221 1235899999999985 32211 1122457899999999875
Q ss_pred CCHHHHHHhh-CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChh
Q 011445 255 ITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDK 333 (485)
Q Consensus 255 l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 333 (485)
+.......+. .+++|++|+++++ .++.. .....+++|++|++++|.++..... ...+++|+.|+++++. +..
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~N~-l~~- 228 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNK-LVL- 228 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSC-CCE-
T ss_pred CCcccHHHHhhccCcCCEEECCCC-cCccc--ccccccccCCEEECCCCcCCcchhh--hcccCcccEEECcCCc-ccc-
Confidence 5544344443 6899999999985 45432 3334589999999999987754322 3357999999999986 553
Q ss_pred hHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCC
Q 011445 334 GISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSC 383 (485)
Q Consensus 334 ~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 383 (485)
+.... ..+++|+.|+++++ .++...+......+++|+.|++.++
T Consensus 229 -l~~~~----~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 229 -IEKAL----RFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp -ECTTC----CCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -hhhHh----hcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCc
Confidence 11112 36789999999997 6664455555567788888877544
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=2.5e-15 Score=139.99 Aligned_cols=207 Identities=16% Similarity=0.091 Sum_probs=115.3
Q ss_pred CCCCcEEecCCCCCCCcccccccChhHhhhc--CCCCCcceEEeCCccccCCCccCccCcHhHHHHhhc-CCCccEEEeC
Q 011445 122 LPFLVELDLEDRPNTEPLARLDLTSSGLQSL--GSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEG-CKGLESVRLG 198 (485)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~~L~~L~l~ 198 (485)
+++|++|++++| .++......+ ..+++|++|+++++. +..+ ...+..+... .++|+.|+++
T Consensus 94 l~~L~~L~L~~n---------~l~~~~~~~~~~~~l~~L~~L~Ls~N~------l~~~-~~~~~~l~~~~~~~L~~L~L~ 157 (312)
T 1wwl_A 94 ISGLQELTLENL---------EVTGTAPPPLLEATGPDLNILNLRNVS------WATR-DAWLAELQQWLKPGLKVLSIA 157 (312)
T ss_dssp TSCCCEEEEEEE---------BCBSCCCCCSSSCCSCCCSEEEEESCB------CSSS-SSHHHHHHTTCCTTCCEEEEE
T ss_pred cCCccEEEccCC---------cccchhHHHHHHhcCCCccEEEccCCC------Ccch-hHHHHHHHHhhcCCCcEEEee
Confidence 667777777763 3443333333 566777777776653 1222 1222332211 3677777777
Q ss_pred CCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHH--cCCCCccEEEcccCCCCC---HHHHHHhhCCCCCCEEE
Q 011445 199 GFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLT--GVPCALVEVRLLWCRLIT---SETVKKLASSRNLEVLD 273 (485)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~---~~~~~~l~~l~~L~~L~ 273 (485)
++. +..... ..+..+++|+.|+++++.......+.... ..+++|++|+++++. ++ ......+..+++|++|+
T Consensus 158 ~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 158 QAH-SLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp SCS-CCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEE
T ss_pred CCC-CccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEE
Confidence 652 222111 11345677777777777533222222222 566778888887765 44 22223344678888888
Q ss_pred ccCCCCCcHHH-hhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEE
Q 011445 274 LGGCKSIADTC-LRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTL 352 (485)
Q Consensus 274 l~~~~~~~~~~-l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L 352 (485)
++++ .+.... ...+..+++|++|++++|.++.. .. ...++|++|+++++. ++.. ..+ ..+++|+.|
T Consensus 235 Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i--p~--~~~~~L~~L~Ls~N~-l~~~--p~~-----~~l~~L~~L 301 (312)
T 1wwl_A 235 LSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQV--PK--GLPAKLSVLDLSYNR-LDRN--PSP-----DELPQVGNL 301 (312)
T ss_dssp CTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCSSC--CS--SCCSEEEEEECCSSC-CCSC--CCT-----TTSCEEEEE
T ss_pred CCCC-cCCcccchhhhhhcCCCCEEECCCCccChh--hh--hccCCceEEECCCCC-CCCC--hhH-----hhCCCCCEE
Confidence 8774 454432 23334568888888888866521 11 011678888888775 5433 112 357888888
Q ss_pred ecCCCCCCC
Q 011445 353 DLGYMPGIS 361 (485)
Q Consensus 353 ~l~~~~~~~ 361 (485)
+++++ .++
T Consensus 302 ~L~~N-~l~ 309 (312)
T 1wwl_A 302 SLKGN-PFL 309 (312)
T ss_dssp ECTTC-TTT
T ss_pred eccCC-CCC
Confidence 88875 444
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.45 E-value=1.5e-13 Score=138.67 Aligned_cols=178 Identities=15% Similarity=0.075 Sum_probs=88.1
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCC
Q 011445 215 CHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL 294 (485)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L 294 (485)
+++|+.|+++++. ++. +....++|+.|++++|. ++... ...++|+.|+++++ .++. +. ..+++|
T Consensus 120 l~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N~-l~~l~----~~~~~L~~L~L~~N-~l~~--l~--~~~~~L 183 (622)
T 3g06_A 120 PSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSDNQ-LASLP----ALPSELCKLWAYNN-QLTS--LP--MLPSGL 183 (622)
T ss_dssp CTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSS-CCSC--CC--CCCTTC
T ss_pred CCCcCEEECCCCC-CCc-----CCCCCCCCCEEECcCCc-CCCcC----CccCCCCEEECCCC-CCCC--Cc--ccCCCC
Confidence 3556666665553 111 11123566666666543 22100 12356666666653 3332 11 335666
Q ss_pred CEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCC
Q 011445 295 TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG 374 (485)
Q Consensus 295 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 374 (485)
+.|++++|.++.. ....++|+.|+++++. ++ .+. ..+++|+.|+++++ .++... ..+++
T Consensus 184 ~~L~Ls~N~l~~l-----~~~~~~L~~L~L~~N~-l~-----~l~----~~~~~L~~L~Ls~N-~L~~lp-----~~l~~ 242 (622)
T 3g06_A 184 QELSVSDNQLASL-----PTLPSELYKLWAYNNR-LT-----SLP----ALPSGLKELIVSGN-RLTSLP-----VLPSE 242 (622)
T ss_dssp CEEECCSSCCSCC-----CCCCTTCCEEECCSSC-CS-----SCC----CCCTTCCEEECCSS-CCSCCC-----CCCTT
T ss_pred cEEECCCCCCCCC-----CCccchhhEEECcCCc-cc-----ccC----CCCCCCCEEEccCC-ccCcCC-----CCCCc
Confidence 6666666655431 1123566666666654 32 122 23456666666664 444311 34566
Q ss_pred CcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 375 IIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 375 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
|+.|++++|. ++. +.. .+++|+.|++++| +++.. ...+. .+++|+.|++++|++.
T Consensus 243 L~~L~Ls~N~-L~~-----lp~------~~~~L~~L~Ls~N-~L~~l-p~~l~--~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 243 LKELMVSGNR-LTS-----LPM------LPSGLLSLSVYRN-QLTRL-PESLI--HLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCEEECCSSC-CSC-----CCC------CCTTCCEEECCSS-CCCSC-CGGGG--GSCTTCEEECCSCCCC
T ss_pred CcEEECCCCC-CCc-----CCc------ccccCcEEeCCCC-CCCcC-CHHHh--hccccCEEEecCCCCC
Confidence 7777776664 331 111 2566777777664 55521 11222 4566777777777655
No 75
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=1.8e-13 Score=112.98 Aligned_cols=114 Identities=15% Similarity=0.258 Sum_probs=96.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHh
Q 011445 346 SQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRW 425 (485)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 425 (485)
...|+.|++++|. +++.++..+ ..|++|++|++++|..++|.++..++.... .+++|++|++++|+++|+.|+..
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~---~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLEN---LQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHH---HHHHCCEEEEESCTTCCHHHHHH
T ss_pred CceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhccc---ccCCCCEEEcCCCCcCCHHHHHH
Confidence 3579999999995 999999988 589999999999999999999999996100 14689999999999999999999
Q ss_pred hcCCCCCCceEEeecceeccCCCchhHHHHhhhCCCceEec
Q 011445 426 VKRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLTFCL 466 (485)
Q Consensus 426 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 466 (485)
+. .|++|+.|++++|+-.+.....+..+....|.+.+..
T Consensus 135 L~--~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 135 LH--HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp GG--GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred Hh--cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 97 7999999999999844322345788888999988755
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.42 E-value=9.3e-13 Score=132.98 Aligned_cols=260 Identities=17% Similarity=0.113 Sum_probs=127.9
Q ss_pred ccceeeeeecCCCcccccccchhhhhcccccceeccccCccccchhHHHhhhhccccccCCCCccccccccCCCccEEEe
Q 011445 26 QLESLSLKIRGFGVEVDACAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSL 105 (485)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 105 (485)
+++.|+++.+.+...+. .++..++.+++++.....++. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~---------~l~~~L~~L~L~~N~l~~lp~-----------------------~l~~L~~L~L 88 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPD---------CLPAHITTLVIPDNNLTSLPA-----------------------LPPELRTLEV 88 (622)
T ss_dssp CCCEEECCSSCCSCCCS---------CCCTTCSEEEECSCCCSCCCC-----------------------CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccCh---------hhCCCCcEEEecCCCCCCCCC-----------------------cCCCCCEEEc
Confidence 57777777665432211 133456777776654322111 2567777777
Q ss_pred cccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcHhHHHH
Q 011445 106 VLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLL 185 (485)
Q Consensus 106 ~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 185 (485)
++|.++... ..+++|++|++++|. ++... ..+++|+.|+++++. +..++
T Consensus 89 s~N~l~~lp-----~~l~~L~~L~Ls~N~---------l~~l~----~~l~~L~~L~L~~N~------l~~lp------- 137 (622)
T 3g06_A 89 SGNQLTSLP-----VLPPGLLELSIFSNP---------LTHLP----ALPSGLCKLWIFGNQ------LTSLP------- 137 (622)
T ss_dssp CSCCCSCCC-----CCCTTCCEEEECSCC---------CCCCC----CCCTTCCEEECCSSC------CSCCC-------
T ss_pred CCCcCCcCC-----CCCCCCCEEECcCCc---------CCCCC----CCCCCcCEEECCCCC------CCcCC-------
Confidence 766654321 146777777777752 22110 145677777776653 11121
Q ss_pred hhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhh-
Q 011445 186 SEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA- 264 (485)
Q Consensus 186 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~- 264 (485)
..+++|+.|++++| .++. + ...+++|+.|+++++. ++. +...+++|+.|++++|. ++. +.
T Consensus 138 -~~l~~L~~L~Ls~N-~l~~--l---~~~~~~L~~L~L~~N~-l~~-----l~~~~~~L~~L~Ls~N~-l~~-----l~~ 198 (622)
T 3g06_A 138 -VLPPGLQELSVSDN-QLAS--L---PALPSELCKLWAYNNQ-LTS-----LPMLPSGLQELSVSDNQ-LAS-----LPT 198 (622)
T ss_dssp -CCCTTCCEEECCSS-CCSC--C---CCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC-CSC-----CCC
T ss_pred -CCCCCCCEEECcCC-cCCC--c---CCccCCCCEEECCCCC-CCC-----CcccCCCCcEEECCCCC-CCC-----CCC
Confidence 12366777777765 2221 0 1123566777666663 211 11334566666666543 221 11
Q ss_pred CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCC
Q 011445 265 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGT 344 (485)
Q Consensus 265 ~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 344 (485)
..++|+.|+++++ .++. +. ..+++|+.|++++|.++... ..+++|+.|+++++. ++ .+. .
T Consensus 199 ~~~~L~~L~L~~N-~l~~--l~--~~~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N~-L~-----~lp----~ 258 (622)
T 3g06_A 199 LPSELYKLWAYNN-RLTS--LP--ALPSGLKELIVSGNRLTSLP-----VLPSELKELMVSGNR-LT-----SLP----M 258 (622)
T ss_dssp CCTTCCEEECCSS-CCSS--CC--CCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSC-CS-----CCC----C
T ss_pred ccchhhEEECcCC-cccc--cC--CCCCCCCEEEccCCccCcCC-----CCCCcCcEEECCCCC-CC-----cCC----c
Confidence 2356666666553 3321 11 12355666666666544311 234566666666553 32 111 1
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHH
Q 011445 345 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASV 391 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~ 391 (485)
.+++|+.|++++| .++.. ......+++|+.|++++|+ ++....
T Consensus 259 ~~~~L~~L~Ls~N-~L~~l--p~~l~~l~~L~~L~L~~N~-l~~~~~ 301 (622)
T 3g06_A 259 LPSGLLSLSVYRN-QLTRL--PESLIHLSSETTVNLEGNP-LSERTL 301 (622)
T ss_dssp CCTTCCEEECCSS-CCCSC--CGGGGGSCTTCEEECCSCC-CCHHHH
T ss_pred ccccCcEEeCCCC-CCCcC--CHHHhhccccCEEEecCCC-CCCcCH
Confidence 3455666666654 34321 1112345566666666554 444333
No 77
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.41 E-value=1.5e-14 Score=135.48 Aligned_cols=232 Identities=18% Similarity=0.162 Sum_probs=103.1
Q ss_pred CCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCc
Q 011445 97 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 176 (485)
Q Consensus 97 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 176 (485)
.+++++|+++++.+... +..+.. +++|++|++++| .++ .....+..+++|++|+++++.. ..
T Consensus 80 ~~~l~~L~L~~n~l~~l-p~~l~~-l~~L~~L~L~~n---------~l~-~lp~~~~~l~~L~~L~Ls~n~l------~~ 141 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF-PDQAFR-LSHLQHMTIDAA---------GLM-ELPDTMQQFAGLETLTLARNPL------RA 141 (328)
T ss_dssp STTCCEEEEESSCCSSC-CSCGGG-GTTCSEEEEESS---------CCC-CCCSCGGGGTTCSEEEEESCCC------CC
T ss_pred ccceeEEEccCCCchhc-Chhhhh-CCCCCEEECCCC---------Ccc-chhHHHhccCCCCEEECCCCcc------cc
Confidence 35666677766555421 222322 666777777664 233 1123345566666666666431 11
Q ss_pred cCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCC
Q 011445 177 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 256 (485)
Q Consensus 177 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 256 (485)
+... ...+++|+.|++++|....... ..+....+.+ ....+++|+.|+++++. ++
T Consensus 142 lp~~-----l~~l~~L~~L~L~~n~~~~~~p--------~~~~~~~~~~-----------~~~~l~~L~~L~L~~n~-l~ 196 (328)
T 4fcg_A 142 LPAS-----IASLNRLRELSIRACPELTELP--------EPLASTDASG-----------EHQGLVNLQSLRLEWTG-IR 196 (328)
T ss_dssp CCGG-----GGGCTTCCEEEEEEETTCCCCC--------SCSEEEC-CC-----------CEEESTTCCEEEEEEEC-CC
T ss_pred CcHH-----HhcCcCCCEEECCCCCCccccC--------hhHhhccchh-----------hhccCCCCCEEECcCCC-cC
Confidence 2111 2245566666666543221100 0011100000 01124555555555543 22
Q ss_pred HHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHH
Q 011445 257 SETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGIS 336 (485)
Q Consensus 257 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 336 (485)
. ....+..+++|++|+++++ .+.. ....+..+++|++|++++|.+.......+ ..+++|+.|++++|..... ...
T Consensus 197 ~-lp~~l~~l~~L~~L~L~~N-~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~-~p~ 271 (328)
T 4fcg_A 197 S-LPASIANLQNLKSLKIRNS-PLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLLT-LPL 271 (328)
T ss_dssp C-CCGGGGGCTTCCEEEEESS-CCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCT-TCCCCCCEEECTTCTTCCB-CCT
T ss_pred c-chHhhcCCCCCCEEEccCC-CCCc-CchhhccCCCCCEEECcCCcchhhhHHHh-cCCCCCCEEECCCCCchhh-cch
Confidence 1 1122445566666666553 3332 11234455666666666654332211111 2356666666666542221 111
Q ss_pred hHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCC
Q 011445 337 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSC 383 (485)
Q Consensus 337 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 383 (485)
.+. .+++|+.|++++|+..+... . ....+++|+.+.+..+
T Consensus 272 ~~~-----~l~~L~~L~L~~n~~~~~iP-~-~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 272 DIH-----RLTQLEKLDLRGCVNLSRLP-S-LIAQLPANCIILVPPH 311 (328)
T ss_dssp TGG-----GCTTCCEEECTTCTTCCCCC-G-GGGGSCTTCEEECCGG
T ss_pred hhh-----cCCCCCEEeCCCCCchhhcc-H-HHhhccCceEEeCCHH
Confidence 122 45666666666654332211 1 1234566666666543
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=2.6e-14 Score=141.20 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=28.9
Q ss_pred CCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCc
Q 011445 97 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC 166 (485)
Q Consensus 97 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 166 (485)
+++|++|+|+++.+.......+ ..+++|++|+|++| .++... .+..+++|+.|+++++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N---------~l~~~~--~l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSN---------VLYETL--DLESLSTLRTLDLNNN 90 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTS---------CCEEEE--ECTTCTTCCEEECCSS
T ss_pred CCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCC---------CCCCCc--ccccCCCCCEEEecCC
Confidence 3456666666555544332233 23566666666664 222111 1455566666666554
No 79
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.39 E-value=1.3e-14 Score=135.92 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=45.6
Q ss_pred cccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCcc
Q 011445 94 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCR 167 (485)
Q Consensus 94 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (485)
+.++++|++|+++++.+. ..+..+ ..+++|++|++++| .++ .....+..+++|++|++++|.
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n---------~l~-~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARN---------PLR-ALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESC---------CCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred hhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCC---------ccc-cCcHHHhcCcCCCEEECCCCC
Confidence 466899999999988876 222334 45899999999996 333 223457788999999998864
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.39 E-value=9.7e-14 Score=129.14 Aligned_cols=258 Identities=17% Similarity=0.108 Sum_probs=159.0
Q ss_pred cccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhH---hhhcCCCCCcceEEeCCccc
Q 011445 92 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSG---LQSLGSCHHLTGLSLTRCRH 168 (485)
Q Consensus 92 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~ 168 (485)
..+...++|++|+++.+.+ ..+..+... |++|+++++.... ..+.... ...+..+++|++|+++++.
T Consensus 37 ~~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~----~~~~~~~~~~~~~~~~l~~L~~L~L~~n~- 106 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRA----ARIPSRILFGALRVLGISGLQELTLENLE- 106 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEE----EECBHHHHHHHHHHHTTSCCCEEEEEEEB-
T ss_pred EEEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccC----CCcCHHHHHHHHHhcCcCCccEEEccCCc-
Confidence 3345567888888887776 223334332 7778887742100 0111111 1112368999999998875
Q ss_pred cCCCccCccCcHhHHHH-hhcCCCccEEEeCCCCCCCHH--HHHHHHH-hCCCCcEEEecCCCCCCHHHHHHHHcCCCCc
Q 011445 169 NHQGTFKRVNDMGMFLL-SEGCKGLESVRLGGFSKVSDA--GFAAILL-SCHSLKKFEVRSASFLSDLAFHDLTGVPCAL 244 (485)
Q Consensus 169 ~~~~~~~~~~~~~l~~l-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 244 (485)
+.......+ ...+++|+.|+++++. ++.. .+..+.. ..++|+.|+++++. +.... ...+..+++|
T Consensus 107 --------l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~-~~~~~~l~~L 175 (312)
T 1wwl_A 107 --------VTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS-CEQVRVFPAL 175 (312)
T ss_dssp --------CBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC-TTTCCCCSSC
T ss_pred --------ccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch-HHHhccCCCC
Confidence 222111111 2467899999999863 3322 1222111 12899999999985 22111 1223467899
Q ss_pred cEEEcccCCCCCHHH-HHHh--hCCCCCCEEEccCCCCCcH---HHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCC
Q 011445 245 VEVRLLWCRLITSET-VKKL--ASSRNLEVLDLGGCKSIAD---TCLRSISCLRKLTALNLTGADITDSGLSILAQGNLP 318 (485)
Q Consensus 245 ~~L~l~~~~~l~~~~-~~~l--~~l~~L~~L~l~~~~~~~~---~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 318 (485)
+.|+++++......+ ...+ ..+++|++|+++++ .++. .....+..+++|++|++++|.+...........+++
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 999999876433222 2344 67899999999985 5552 222333578999999999998776431112224689
Q ss_pred ccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCC
Q 011445 319 IMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 384 (485)
Q Consensus 319 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 384 (485)
|+.|+++++. ++ .+.. ...++|+.|+++++ .+++.. . ...+++|++|++++|+
T Consensus 255 L~~L~Ls~N~-l~-----~ip~---~~~~~L~~L~Ls~N-~l~~~p--~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 255 LNSLNLSFTG-LK-----QVPK---GLPAKLSVLDLSYN-RLDRNP--S-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCEEECTTSC-CS-----SCCS---SCCSEEEEEECCSS-CCCSCC--C-TTTSCEEEEEECTTCT
T ss_pred CCEEECCCCc-cC-----hhhh---hccCCceEEECCCC-CCCCCh--h-HhhCCCCCEEeccCCC
Confidence 9999999886 54 2221 11279999999986 666542 1 3467999999999986
No 81
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.38 E-value=2.5e-15 Score=139.96 Aligned_cols=231 Identities=15% Similarity=0.073 Sum_probs=149.8
Q ss_pred cccccCCCccEEEec-ccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccC
Q 011445 92 SSYYSSFNLRSLSLV-LDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNH 170 (485)
Q Consensus 92 ~~~~~~~~L~~L~L~-~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 170 (485)
..+.++++|++|+++ ++.+....+..+ ..+++|++|++++| .++......+..+++|++|+++++.
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n---------~l~~~~p~~~~~l~~L~~L~Ls~N~--- 136 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHT---------NVSGAIPDFLSQIKTLVTLDFSYNA--- 136 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEE---------CCEEECCGGGGGCTTCCEEECCSSE---
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCC---------eeCCcCCHHHhCCCCCCEEeCCCCc---
Confidence 345779999999999 476654444445 35999999999994 5554445567889999999998864
Q ss_pred CCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCC-CCcEEEecCCCCCCHHHHHHHHcCCCCccEEEc
Q 011445 171 QGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCH-SLKKFEVRSASFLSDLAFHDLTGVPCALVEVRL 249 (485)
Q Consensus 171 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 249 (485)
+...... ....+++|++|+++++. ++.. +...+..++ +|+.|+++++.. ... .......++ |+.|++
T Consensus 137 ------l~~~~p~-~~~~l~~L~~L~L~~N~-l~~~-~p~~l~~l~~~L~~L~L~~N~l-~~~-~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 137 ------LSGTLPP-SISSLPNLVGITFDGNR-ISGA-IPDSYGSFSKLFTSMTISRNRL-TGK-IPPTFANLN-LAFVDL 204 (313)
T ss_dssp ------EESCCCG-GGGGCTTCCEEECCSSC-CEEE-CCGGGGCCCTTCCEEECCSSEE-EEE-CCGGGGGCC-CSEEEC
T ss_pred ------cCCcCCh-HHhcCCCCCeEECcCCc-ccCc-CCHHHhhhhhcCcEEECcCCee-ecc-CChHHhCCc-ccEEEC
Confidence 2211111 12367899999999863 3211 111234555 999999999842 110 111223344 999999
Q ss_pred ccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCC
Q 011445 250 LWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKR 329 (485)
Q Consensus 250 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 329 (485)
+++. +.......+..+++|+.|+++++ .++.. ...+..+++|++|++++|.+.......+. .+++|+.|+++++.
T Consensus 205 s~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~- 279 (313)
T 1ogq_A 205 SRNM-LEGDASVLFGSDKNTQKIHLAKN-SLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNN- 279 (313)
T ss_dssp CSSE-EEECCGGGCCTTSCCSEEECCSS-EECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEEECCSSE-
T ss_pred cCCc-ccCcCCHHHhcCCCCCEEECCCC-ceeee-cCcccccCCCCEEECcCCcccCcCChHHh-cCcCCCEEECcCCc-
Confidence 9875 33333345678899999999985 44422 23356789999999999977644333333 47889999998876
Q ss_pred CChhhHHhHhhhcCCCCCCccEEecCCCC
Q 011445 330 VTDKGISHLLCVGGTISQSLTTLDLGYMP 358 (485)
Q Consensus 330 l~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 358 (485)
++.. +. ....+++|+.+++++++
T Consensus 280 l~~~----ip--~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 280 LCGE----IP--QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEE----CC--CSTTGGGSCGGGTCSSS
T ss_pred cccc----CC--CCccccccChHHhcCCC
Confidence 4321 11 00245677777777654
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=1.5e-12 Score=120.73 Aligned_cols=191 Identities=20% Similarity=0.187 Sum_probs=111.4
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCC
Q 011445 216 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 295 (485)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~ 295 (485)
++|+.|+++++. +.. +. ....+++|+.|++++|. +.+... +..+++|++|+++++ .+.. +..+..+++|+
T Consensus 41 ~~L~~L~l~~~~-i~~--l~-~~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n-~l~~--~~~~~~l~~L~ 110 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTT--IE-GVQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGN-PLKN--VSAIAGLQSIK 110 (308)
T ss_dssp HTCCEEECTTSC-CCC--CT-TGGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSC-CCSC--CGGGTTCTTCC
T ss_pred CCcCEEEeeCCC-ccC--ch-hhhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCC-cCCC--chhhcCCCCCC
Confidence 555555555553 111 01 12345666666666553 222211 556677777777764 3433 23456677777
Q ss_pred EEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCC
Q 011445 296 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGI 375 (485)
Q Consensus 296 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 375 (485)
+|++++|.+.+.. . ...+++|+.|+++++. ++... .+. .+++|+.|+++++ .+++... ...+++|
T Consensus 111 ~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~--~l~-----~l~~L~~L~l~~n-~l~~~~~---l~~l~~L 175 (308)
T 1h6u_A 111 TLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ-ITNIS--PLA-----GLTNLQYLSIGNA-QVSDLTP---LANLSKL 175 (308)
T ss_dssp EEECTTSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCG--GGG-----GCTTCCEEECCSS-CCCCCGG---GTTCTTC
T ss_pred EEECCCCCCCCch--h-hcCCCCCCEEECCCCc-cCcCc--ccc-----CCCCccEEEccCC-cCCCChh---hcCCCCC
Confidence 7777777665432 2 2346777777777765 43222 122 5677888888776 4544221 3456788
Q ss_pred cEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccC
Q 011445 376 IDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 376 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
+.|++++|. +++.. .+. .+++|+.|++++| .++... .+ ..+++|+.|++++|++..
T Consensus 176 ~~L~l~~n~-l~~~~--~l~-------~l~~L~~L~L~~N-~l~~~~--~l--~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 176 TTLKADDNK-ISDIS--PLA-------SLPNLIEVHLKNN-QISDVS--PL--ANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CEEECCSSC-CCCCG--GGG-------GCTTCCEEECTTS-CCCBCG--GG--TTCTTCCEEEEEEEEEEC
T ss_pred CEEECCCCc-cCcCh--hhc-------CCCCCCEEEccCC-ccCccc--cc--cCCCCCCEEEccCCeeec
Confidence 888887775 44322 122 4788888888885 565433 23 367888888888888764
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.36 E-value=8.2e-14 Score=137.66 Aligned_cols=237 Identities=16% Similarity=0.074 Sum_probs=152.0
Q ss_pred CCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCCC
Q 011445 122 LPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFS 201 (485)
Q Consensus 122 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 201 (485)
+++|++|+|++| .++......+..+++|+.|+++++. ++.... ...+++|+.|+++++
T Consensus 33 ~~~L~~L~Ls~n---------~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~~---l~~l~~L~~L~Ls~N- 90 (487)
T 3oja_A 33 AWNVKELDLSGN---------PLSQISAADLAPFTKLELLNLSSNV---------LYETLD---LESLSTLRTLDLNNN- 90 (487)
T ss_dssp GGGCCEEECCSS---------CCCCCCGGGGTTCTTCCEEECTTSC---------CEEEEE---CTTCTTCCEEECCSS-
T ss_pred CCCccEEEeeCC---------cCCCCCHHHHhCCCCCCEEEeeCCC---------CCCCcc---cccCCCCCEEEecCC-
Confidence 458999999884 4555445567788889999998864 221111 346788999998886
Q ss_pred CCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCc
Q 011445 202 KVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIA 281 (485)
Q Consensus 202 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 281 (485)
.++. +...++|+.|+++++. +.... ...+++|+.|++++|. ++......+..+++|+.|+++++ .++
T Consensus 91 ~l~~------l~~~~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~ 157 (487)
T 3oja_A 91 YVQE------LLVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EID 157 (487)
T ss_dssp EEEE------EEECTTCCEEECCSSC-CCCEE----ECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTS-CCC
T ss_pred cCCC------CCCCCCcCEEECcCCc-CCCCC----ccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCC-CCC
Confidence 3332 1123788999988875 22111 1245788999988865 44433334566788999999884 565
Q ss_pred HHHhhccc-CCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCC
Q 011445 282 DTCLRSIS-CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGI 360 (485)
Q Consensus 282 ~~~l~~l~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~ 360 (485)
......+. .+++|+.|++++|.++... ... .+++|+.|+++++. ++..... +. .+++|+.|+++++ .+
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~-~l~~L~~L~Ls~N~-l~~~~~~-~~-----~l~~L~~L~Ls~N-~l 226 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQV-VFAKLKTLDLSSNK-LAFMGPE-FQ-----SAAGVTWISLRNN-KL 226 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCC-CCTTCCEEECCSSC-CCEECGG-GG-----GGTTCSEEECTTS-CC
T ss_pred CcChHHHhhhCCcccEEecCCCcccccc--ccc-cCCCCCEEECCCCC-CCCCCHh-Hc-----CCCCccEEEecCC-cC
Confidence 54444444 6788999999888776541 111 37889999998876 5432221 22 5678999999886 55
Q ss_pred CHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEecc
Q 011445 361 SDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLC 413 (485)
Q Consensus 361 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~ 413 (485)
+.. ......+++|+.|++++|+ +....+..... .++.|+.+++.
T Consensus 227 ~~l--p~~l~~l~~L~~L~l~~N~-l~c~~~~~~~~------~l~~L~~l~~~ 270 (487)
T 3oja_A 227 VLI--EKALRFSQNLEHFDLRGNG-FHCGTLRDFFS------KNQRVQTVAKQ 270 (487)
T ss_dssp CEE--CTTCCCCTTCCEEECTTCC-BCHHHHHHHHT------TCHHHHHHHHH
T ss_pred ccc--chhhccCCCCCEEEcCCCC-CcCcchHHHHH------hCCCCcEEecc
Confidence 531 1112346889999998886 55333333333 46677766664
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.33 E-value=2.8e-12 Score=118.87 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=61.3
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCcc
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 174 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 174 (485)
.++++|++|+++++.+... ..+ ..+++|++|++++| .++.... +..+++|+.|+++++.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~~-~~l~~L~~L~L~~n---------~i~~~~~--~~~l~~L~~L~L~~n~------- 96 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--EGV-QYLNNLIGLELKDN---------QITDLAP--LKNLTKITELELSGNP------- 96 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTG-GGCTTCCEEECCSS---------CCCCCGG--GTTCCSCCEEECCSCC-------
T ss_pred HHcCCcCEEEeeCCCccCc--hhh-hccCCCCEEEccCC---------cCCCChh--HccCCCCCEEEccCCc-------
Confidence 4577888888887766542 223 34888888888885 3333222 6778888888887764
Q ss_pred CccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 011445 175 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS 227 (485)
Q Consensus 175 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 227 (485)
+.+. .. ...+++|+.|+++++. ++.. .. +..+++|+.|+++++.
T Consensus 97 --l~~~--~~-~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 97 --LKNV--SA-IAGLQSIKTLDLTSTQ-ITDV--TP-LAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp --CSCC--GG-GTTCTTCCEEECTTSC-CCCC--GG-GTTCTTCCEEECCSSC
T ss_pred --CCCc--hh-hcCCCCCCEEECCCCC-CCCc--hh-hcCCCCCCEEECCCCc
Confidence 2211 11 2356677777777652 3221 11 3445666666666653
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=121.84 Aligned_cols=186 Identities=17% Similarity=0.122 Sum_probs=98.4
Q ss_pred CCCccEEEecccCCChHHHHHHHh--cCCCCcEEecCCCCCCCcccccccChhHhhhc--CCCCCcceEEeCCccccCCC
Q 011445 97 SFNLRSLSLVLDVITDELLITITA--SLPFLVELDLEDRPNTEPLARLDLTSSGLQSL--GSCHHLTGLSLTRCRHNHQG 172 (485)
Q Consensus 97 ~~~L~~L~L~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~ 172 (485)
...++.+.+....+.+..+..+.+ .+++|++|++++| .+.......+ ..+++|++|+++++.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n---------~l~~~~~~~~~~~~~~~L~~L~Ls~n~----- 128 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL---------KITGTMPPLPLEATGLALSSLRLRNVS----- 128 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC---------CCBSCCCCCSSSCCCBCCSSCEEESCC-----
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC---------EeccchhhhhhhccCCCCCEEEeeccc-----
Confidence 345788888877777665554432 2578999999995 4444444444 788999999998865
Q ss_pred ccCccCcH----hHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHH--HcCCCCccE
Q 011445 173 TFKRVNDM----GMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDL--TGVPCALVE 246 (485)
Q Consensus 173 ~~~~~~~~----~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~ 246 (485)
+... ....+. .+++|+.|+++++. +..... ..+..+++|+.|+++++.......+... ...+++|+.
T Consensus 129 ----i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 129 ----WATGRSWLAELQQW-LKPGLKVLSIAQAH-SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp ----CSSTTSSHHHHHTT-BCSCCCEEEEECCS-SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred ----ccchhhhhHHHHhh-hccCCCEEEeeCCC-cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence 2221 111222 56788888887753 221111 1133456777777777653222222211 134556666
Q ss_pred EEcccCCCCCH--HHHH-HhhCCCCCCEEEccCCCCCcHHHhhcccCC---CCCCEEEcCCCCCC
Q 011445 247 VRLLWCRLITS--ETVK-KLASSRNLEVLDLGGCKSIADTCLRSISCL---RKLTALNLTGADIT 305 (485)
Q Consensus 247 L~l~~~~~l~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~---~~L~~L~l~~~~l~ 305 (485)
|++++|. ++. .... .+..+++|++|+++++ .+++.....+..+ ++|++|++++|.++
T Consensus 202 L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 202 LALRNTG-METPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred EECCCCC-CCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 6666554 221 1111 1234556666666553 3333221222222 45555555555443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=121.12 Aligned_cols=229 Identities=15% Similarity=0.101 Sum_probs=130.3
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHH--hCCCCcEEEecCCCCCCHHHHHHHH-cCCCCccEEEcccCCCCCH----HHHHH
Q 011445 190 KGLESVRLGGFSKVSDAGFAAILL--SCHSLKKFEVRSASFLSDLAFHDLT-GVPCALVEVRLLWCRLITS----ETVKK 262 (485)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~----~~~~~ 262 (485)
..++.+.+.++ .+++..+..+.. .+++|+.|+++++.. .......+. ..+++|+.|+++++. ++. .....
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHH
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHH
Confidence 46788888875 456655544333 236799999988742 111101111 456788888888765 332 12233
Q ss_pred hhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHH-HHH--HHhcCCCccEEEccCCCCCChh--hHHh
Q 011445 263 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSG-LSI--LAQGNLPIMNLCLRGCKRVTDK--GISH 337 (485)
Q Consensus 263 l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~-~~~--l~~~~~~L~~L~l~~~~~l~~~--~~~~ 337 (485)
+..+++|++|+++++ .+.......+..+++|++|++++|.+.... +.. ....+++|++|++++|. ++.. ....
T Consensus 141 ~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~ 218 (310)
T 4glp_A 141 QWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAA 218 (310)
T ss_dssp TTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHH
T ss_pred hhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHH
Confidence 446788888888774 454444455667788888888887655432 211 11246777888887775 4421 1111
Q ss_pred HhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhC---CCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccC
Q 011445 338 LLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG---IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN 414 (485)
Q Consensus 338 l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 414 (485)
+. ..+++|++|+++++ .+++.....+ ..+ ++|++|++++|. ++. ++.. -.++|+.|++++
T Consensus 219 l~----~~l~~L~~L~Ls~N-~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~-l~~-----lp~~-----~~~~L~~L~Ls~ 281 (310)
T 4glp_A 219 LA----AAGVQPHSLDLSHN-SLRATVNPSA-PRCMWSSALNSLNLSFAG-LEQ-----VPKG-----LPAKLRVLDLSS 281 (310)
T ss_dssp HH----HHTCCCSSEECTTS-CCCCCCCSCC-SSCCCCTTCCCEECCSSC-CCS-----CCSC-----CCSCCSCEECCS
T ss_pred HH----hcCCCCCEEECCCC-CCCccchhhH-HhccCcCcCCEEECCCCC-CCc-----hhhh-----hcCCCCEEECCC
Confidence 22 24577788888775 4443211111 122 577777777775 431 1111 236777777777
Q ss_pred CCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 415 CIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 415 c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
+ +++... .+ ..+++|+.|++++|++.
T Consensus 282 N-~l~~~~--~~--~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 282 N-RLNRAP--QP--DELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-CCCSCC--CT--TSCCCCSCEECSSTTTS
T ss_pred C-cCCCCc--hh--hhCCCccEEECcCCCCC
Confidence 4 555321 12 35677777777777765
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.28 E-value=4e-13 Score=122.24 Aligned_cols=162 Identities=16% Similarity=0.120 Sum_probs=92.0
Q ss_pred hhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhc
Q 011445 263 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG 342 (485)
Q Consensus 263 l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 342 (485)
+..+++|++|+++++ .++......+..+++|++|++++|.+.......+ ..+++|++|+++++. +.......+
T Consensus 57 ~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~---- 129 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF-DQLVNLAELRLDRNQ-LKSLPPRVF---- 129 (270)
T ss_dssp SSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT-TTCSSCCEEECCSSC-CCCCCTTTT----
T ss_pred hcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc-ccccCCCEEECCCCc-cCeeCHHHh----
Confidence 445666666666653 3433222334456677777777665543322121 236677777777654 332222112
Q ss_pred CCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHH
Q 011445 343 GTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDS 422 (485)
Q Consensus 343 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 422 (485)
..+++|++|+++++ .++...... ...+++|+.|++++|. ++......+. .+++|+.|+++++ .++...
T Consensus 130 -~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~ 197 (270)
T 2o6q_A 130 -DSLTKLTYLSLGYN-ELQSLPKGV-FDKLTSLKELRLYNNQ-LKRVPEGAFD-------KLTELKTLKLDNN-QLKRVP 197 (270)
T ss_dssp -TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTT-------TCTTCCEEECCSS-CCSCCC
T ss_pred -CcCcCCCEEECCCC-cCCccCHhH-ccCCcccceeEecCCc-CcEeChhHhc-------cCCCcCEEECCCC-cCCcCC
Confidence 25677778887775 444322111 2356788888888775 4332111122 4788999999885 666433
Q ss_pred HHhhcCCCCCCceEEeecceecc
Q 011445 423 LRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 423 ~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
...+. .+++|+.|++++|++.
T Consensus 198 ~~~~~--~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 198 EGAFD--SLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTT--TCTTCCEEECCSSCBC
T ss_pred HHHhc--cccCCCEEEecCCCee
Confidence 33332 6788999999998865
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.28 E-value=2.5e-13 Score=124.09 Aligned_cols=207 Identities=15% Similarity=0.048 Sum_probs=139.1
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCC
Q 011445 216 HSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT 295 (485)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~ 295 (485)
++|+.|+++++. +..... ..+..+++|+.|+++++. +.......+..+++|++|+++++ .++......+..+++|+
T Consensus 28 ~~l~~L~ls~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCC-CCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCc-ccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCcccc
Confidence 579999999985 322111 123467899999999875 55443345678899999999985 56555555677899999
Q ss_pred EEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHH---HHHHHHhhC
Q 011445 296 ALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDD---GILTIAAAG 372 (485)
Q Consensus 296 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~ 372 (485)
+|++++|.+.......+ ..+++|++|+++++. +....+.... ..+++|++|+++++ .++.. .+..+ ..+
T Consensus 104 ~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~l~~~~----~~l~~L~~L~Ls~N-~l~~~~~~~~~~l-~~L 175 (276)
T 2z62_A 104 KLVAVETNLASLENFPI-GHLKTLKELNVAHNL-IQSFKLPEYF----SNLTNLEHLDLSSN-KIQSIYCTDLRVL-HQM 175 (276)
T ss_dssp EEECTTSCCCCSTTCCC-TTCTTCCEEECCSSC-CCCCCCCGGG----GGCTTCCEEECCSS-CCCEECGGGGHHH-HTC
T ss_pred EEECCCCCccccCchhc-ccCCCCCEEECcCCc-cceecCchhh----ccCCCCCEEECCCC-CCCcCCHHHhhhh-hhc
Confidence 99999987665332222 347899999999886 5432222222 35789999999997 55542 23333 233
Q ss_pred CCCc-EEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccC
Q 011445 373 IGII-DLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 373 ~~L~-~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
+.|. .|++++|. ++... .... ...+|+.|+++++ .++......+ ..+++|+.|++++|++.-
T Consensus 176 ~~l~l~L~ls~n~-l~~~~-----~~~~---~~~~L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 176 PLLNLSLDLSLNP-MNFIQ-----PGAF---KEIRLKELALDTN-QLKSVPDGIF--DRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTCCEEEECCSSC-CCEEC-----TTSS---CSCCEEEEECCSS-CCSCCCTTTT--TTCCSCCEEECCSSCBCC
T ss_pred cccceeeecCCCc-ccccC-----cccc---CCCcccEEECCCC-ceeecCHhHh--cccccccEEEccCCcccc
Confidence 4444 89998886 44221 1111 3558999999995 6765433333 368899999999999873
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=2.8e-13 Score=123.73 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=50.3
Q ss_pred CCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCcc
Q 011445 98 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRV 177 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 177 (485)
++|++|+++++.+.......+ ..+++|++|++++| .++......+..+++|+.|+++++. +
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n---------~l~~~~~~~~~~l~~L~~L~L~~n~---------l 88 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRC---------EIQTIEDGAYQSLSHLSTLILTGNP---------I 88 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTC---------CCCEECTTTTTTCTTCCEEECTTCC---------C
T ss_pred CCccEEECCCCcccccCHhHh-ccccCCcEEECCCC---------cCCccCHHHccCCcCCCEEECCCCc---------c
Confidence 468888888777765443334 34788888888884 3444434456677888888887754 2
Q ss_pred CcHhHHHHhhcCCCccEEEeCCC
Q 011445 178 NDMGMFLLSEGCKGLESVRLGGF 200 (485)
Q Consensus 178 ~~~~l~~l~~~~~~L~~L~l~~~ 200 (485)
....... ...+++|+.|+++++
T Consensus 89 ~~~~~~~-~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 89 QSLALGA-FSGLSSLQKLVAVET 110 (276)
T ss_dssp CEECTTT-TTTCTTCCEEECTTS
T ss_pred CccChhh-hcCCccccEEECCCC
Confidence 2111111 124567777777664
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=7.5e-13 Score=120.53 Aligned_cols=175 Identities=14% Similarity=0.069 Sum_probs=93.0
Q ss_pred CCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCc
Q 011445 240 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 319 (485)
Q Consensus 240 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L 319 (485)
.+++|+.|+++++. +.. +..+..+++|++|+++++ .++......+..+++|++|++++|.+.......+ ..+++|
T Consensus 61 ~l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L 135 (272)
T 3rfs_A 61 YLPNVRYLALGGNK-LHD--ISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF-DKLTNL 135 (272)
T ss_dssp GCTTCCEEECTTSC-CCC--CGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTC
T ss_pred cCCCCcEEECCCCC-CCC--chhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHh-ccCCCC
Confidence 35556666665543 222 124556677777777664 4443333334566777777777765553322112 235677
Q ss_pred cEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCC
Q 011445 320 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQP 399 (485)
Q Consensus 320 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 399 (485)
+.|+++++. ++......+ ..+++|+.|+++++ .++..... ....+++|+.|++++|. ++......+.
T Consensus 136 ~~L~L~~n~-l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~---- 202 (272)
T 3rfs_A 136 TYLNLAHNQ-LQSLPKGVF-----DKLTNLTELDLSYN-QLQSLPEG-VFDKLTQLKDLRLYQNQ-LKSVPDGVFD---- 202 (272)
T ss_dssp CEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTT----
T ss_pred CEEECCCCc-cCccCHHHh-----ccCccCCEEECCCC-CcCccCHH-HhcCCccCCEEECCCCc-CCccCHHHHh----
Confidence 777777664 432221111 24567777777765 44432111 11345777777777764 3321111111
Q ss_pred CCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 400 DQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 400 ~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
.+++|+.|++++++ ++ +.||+|+.++++.|.+.
T Consensus 203 ---~l~~L~~L~l~~N~-~~---------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 203 ---RLTSLQYIWLHDNP-WD---------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp ---TCTTCCEEECCSSC-BC---------CCTTTTHHHHHHHHHTG
T ss_pred ---CCcCCCEEEccCCC-cc---------ccCcHHHHHHHHHHhCC
Confidence 47777777777752 11 34667777777666644
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=6e-12 Score=108.52 Aligned_cols=151 Identities=20% Similarity=0.193 Sum_probs=81.2
Q ss_pred CCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCC
Q 011445 267 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 346 (485)
Q Consensus 267 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 346 (485)
++|+.|+++++ .+.+ +..+..+++|++|++++|.+.+.. .+ ..+++|++|+++++. +++.....+. .+
T Consensus 44 ~~L~~L~l~~n-~i~~--l~~l~~l~~L~~L~l~~n~~~~~~--~l-~~l~~L~~L~l~~n~-l~~~~~~~l~-----~l 111 (197)
T 4ezg_A 44 NSLTYITLANI-NVTD--LTGIEYAHNIKDLTINNIHATNYN--PI-SGLSNLERLRIMGKD-VTSDKIPNLS-----GL 111 (197)
T ss_dssp HTCCEEEEESS-CCSC--CTTGGGCTTCSEEEEESCCCSCCG--GG-TTCTTCCEEEEECTT-CBGGGSCCCT-----TC
T ss_pred CCccEEeccCC-CccC--hHHHhcCCCCCEEEccCCCCCcch--hh-hcCCCCCEEEeECCc-cCcccChhhc-----CC
Confidence 44555555542 3321 113445556666666655443321 12 235666666666554 4433333333 45
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhh
Q 011445 347 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 426 (485)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 426 (485)
++|+.|+++++ .+++.....+ ..+++|++|++++|..+++.. .+. .+++|+.|++++| .+++.. .+
T Consensus 112 ~~L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~l~-------~l~~L~~L~l~~n-~i~~~~--~l 177 (197)
T 4ezg_A 112 TSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDIM--PLK-------TLPELKSLNIQFD-GVHDYR--GI 177 (197)
T ss_dssp TTCCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--GGG-------GCSSCCEEECTTB-CCCCCT--TG
T ss_pred CCCCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCccccH--hhc-------CCCCCCEEECCCC-CCcChH--Hh
Confidence 67777777765 5555434433 356777777777775344431 222 4778888888875 555422 33
Q ss_pred cCCCCCCceEEeecceecc
Q 011445 427 KRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 427 ~~~~~~~L~~L~l~~~~~~ 445 (485)
. .+++|+.|++++|++.
T Consensus 178 ~--~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 178 E--DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp G--GCSSCCEEEECBC---
T ss_pred c--cCCCCCEEEeeCcccC
Confidence 3 5778888888888765
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=5.1e-12 Score=114.96 Aligned_cols=179 Identities=17% Similarity=0.137 Sum_probs=122.0
Q ss_pred CCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccE
Q 011445 242 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 321 (485)
Q Consensus 242 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~ 321 (485)
++|+.|++.++. +.. +..+..+++|++|+++++ .+.+ +..+..+++|++|++++|.++......+ ..+++|++
T Consensus 41 ~~L~~L~l~~~~-i~~--~~~l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 113 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKS--VQGIQYLPNVRYLALGGN-KLHD--ISALKELTNLTYLILTGNQLQSLPNGVF-DKLTNLKE 113 (272)
T ss_dssp TTCCEEECTTSC-CCC--CTTGGGCTTCCEEECTTS-CCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCE
T ss_pred cceeeeeeCCCC-ccc--ccccccCCCCcEEECCCC-CCCC--chhhcCCCCCCEEECCCCccCccChhHh-cCCcCCCE
Confidence 455566665543 221 223667899999999985 4544 3467789999999999997765432222 34899999
Q ss_pred EEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCC
Q 011445 322 LCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQ 401 (485)
Q Consensus 322 L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 401 (485)
|+++++. +.......+ ..+++|+.|+++++ .++..... ....+++|+.|++++|. ++......+.
T Consensus 114 L~L~~n~-l~~~~~~~~-----~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~------ 178 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVF-----DKLTNLTYLNLAHN-QLQSLPKG-VFDKLTNLTELDLSYNQ-LQSLPEGVFD------ 178 (272)
T ss_dssp EECTTSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTT------
T ss_pred EECCCCc-CCccCHHHh-----ccCCCCCEEECCCC-ccCccCHH-HhccCccCCEEECCCCC-cCccCHHHhc------
Confidence 9999986 543222222 36789999999997 56543221 12467999999999995 5432211122
Q ss_pred cCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccC
Q 011445 402 EKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 402 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
.+++|+.|++++| .++......+ ..+++|+.|++++|++..
T Consensus 179 -~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 179 -KLTQLKDLRLYQN-QLKSVPDGVF--DRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp -TCTTCCEEECCSS-CCSCCCTTTT--TTCTTCCEEECCSSCBCC
T ss_pred -CCccCCEEECCCC-cCCccCHHHH--hCCcCCCEEEccCCCccc
Confidence 5899999999996 6665333333 368999999999999763
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=3.5e-11 Score=103.65 Aligned_cols=150 Identities=18% Similarity=0.153 Sum_probs=90.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCC
Q 011445 215 CHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL 294 (485)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L 294 (485)
+++|+.|+++++. +.. +. -...+++|+.|++++|. +.. +..+..+++|++|+++++ .+++.....++.+++|
T Consensus 43 l~~L~~L~l~~n~-i~~--l~-~l~~l~~L~~L~l~~n~-~~~--~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTD--LT-GIEYAHNIKDLTINNIH-ATN--YNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSC-CSC--CT-TGGGCTTCSEEEEESCC-CSC--CGGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred cCCccEEeccCCC-ccC--hH-HHhcCCCCCEEEccCCC-CCc--chhhhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence 3677777777764 221 11 13456677777777663 332 224666778888888774 5665556666777888
Q ss_pred CEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCC
Q 011445 295 TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG 374 (485)
Q Consensus 295 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 374 (485)
++|++++|.+++.....+.. +++|++|++++|..+++.. .+. .+++|+.|++++| .+++.. ....+++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~~~~--~l~-----~l~~L~~L~l~~n-~i~~~~---~l~~l~~ 182 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDIM--PLK-----TLPELKSLNIQFD-GVHDYR---GIEDFPK 182 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCCCCG--GGG-----GCSSCCEEECTTB-CCCCCT---TGGGCSS
T ss_pred CEEEecCCccCcHhHHHHhh-CCCCCEEEccCCCCccccH--hhc-----CCCCCCEEECCCC-CCcChH---HhccCCC
Confidence 88888887777655555543 6777777777775344322 222 4667777777765 444421 1234566
Q ss_pred CcEEEecCCC
Q 011445 375 IIDLCVRSCF 384 (485)
Q Consensus 375 L~~L~l~~~~ 384 (485)
|+.|++++|.
T Consensus 183 L~~L~l~~N~ 192 (197)
T 4ezg_A 183 LNQLYAFSQT 192 (197)
T ss_dssp CCEEEECBC-
T ss_pred CCEEEeeCcc
Confidence 6666666654
No 94
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.15 E-value=1.2e-11 Score=113.41 Aligned_cols=178 Identities=17% Similarity=0.097 Sum_probs=95.1
Q ss_pred cccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCc
Q 011445 94 YYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGT 173 (485)
Q Consensus 94 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 173 (485)
+.+++++++++++.+.++.... .-.+++++|++++| .++......+..+++|+.|+++++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~----~~~~~l~~L~L~~N---------~l~~~~~~~~~~l~~L~~L~L~~n~l----- 67 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP----DLPKDTTILHLSEN---------LLYTFSLATLMPYTRLTQLNLDRAEL----- 67 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS----CCCTTCCEEECTTS---------CCSEEEGGGGTTCTTCCEEECTTSCC-----
T ss_pred ccccCCccEEECCCCCCCcCCC----CCCCCCCEEEcCCC---------cCCccCHHHhhcCCCCCEEECCCCcc-----
Confidence 4667889999998777654211 11468999999984 55555556678889999999987641
Q ss_pred cCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCC
Q 011445 174 FKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCR 253 (485)
Q Consensus 174 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 253 (485)
..+... ..+++|+.|+++++ .+.. +...+..+++|+.|+++++.
T Consensus 68 -~~~~~~------~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~-------------------------- 111 (290)
T 1p9a_G 68 -TKLQVD------GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNR-------------------------- 111 (290)
T ss_dssp -CEEECC------SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSC--------------------------
T ss_pred -CcccCC------CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCc--------------------------
Confidence 111111 25677777777764 2221 11112344555555555553
Q ss_pred CCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCC
Q 011445 254 LITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 328 (485)
Q Consensus 254 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 328 (485)
++......+..+++|++|+++++ .+.......+..+++|+.|++++|.++..... ....+++|+.|+++++.
T Consensus 112 -l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 112 -LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAG-LLNGLENLDTLLLQENS 183 (290)
T ss_dssp -CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred -CcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHH-HhcCcCCCCEEECCCCc
Confidence 11111112334455555555552 33322222234455566666655544422111 11224556666665554
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.14 E-value=7.9e-11 Score=108.09 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=37.7
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCC
Q 011445 215 CHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL 294 (485)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L 294 (485)
+++|+.|+++++.. ... . ....+++|+.|+++++. +++.. .+..+++|++|+++++ .+++ +..+..+++|
T Consensus 45 l~~L~~L~l~~~~i-~~~--~-~~~~l~~L~~L~L~~n~-l~~~~--~l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDI-KSV--Q-GIQYLPNVTKLFLNGNK-LTDIK--PLANLKNLGWLFLDEN-KVKD--LSSLKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCC-CCC--T-TGGGCTTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSS-CCCC--GGGGTTCTTC
T ss_pred cCcccEEEccCCCc-ccC--h-hHhcCCCCCEEEccCCc-cCCCc--ccccCCCCCEEECCCC-cCCC--ChhhccCCCC
Confidence 36777777776642 111 0 12335555566555543 22211 1445555555555553 2322 2234445555
Q ss_pred CEEEcCCCCCC
Q 011445 295 TALNLTGADIT 305 (485)
Q Consensus 295 ~~L~l~~~~l~ 305 (485)
++|++++|.+.
T Consensus 115 ~~L~L~~n~i~ 125 (291)
T 1h6t_A 115 KSLSLEHNGIS 125 (291)
T ss_dssp CEEECTTSCCC
T ss_pred CEEECCCCcCC
Confidence 55555555443
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.13 E-value=6.9e-12 Score=113.98 Aligned_cols=184 Identities=15% Similarity=0.080 Sum_probs=125.8
Q ss_pred CCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCC
Q 011445 267 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 346 (485)
Q Consensus 267 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 346 (485)
+++++|+++++ .++......+..+++|++|++++|.++..... ....+++|++|+++++. +.......+ ..+
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~-----~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG-IFKELKNLETLWVTDNK-LQALPIGVF-----DQL 108 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT-TTSSCTTCCEEECCSSC-CCCCCTTTT-----TTC
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChh-hhcCCCCCCEEECCCCc-CCcCCHhHc-----ccc
Confidence 57889998884 55544444677899999999999977643222 22358999999999886 543322222 367
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhh
Q 011445 347 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 426 (485)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 426 (485)
++|++|+++++ .++...... ...+++|++|++++|. ++......+. .+++|+.|+++++ .++......+
T Consensus 109 ~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~L~~n-~l~~~~~~~~ 177 (270)
T 2o6q_A 109 VNLAELRLDRN-QLKSLPPRV-FDSLTKLTYLSLGYNE-LQSLPKGVFD-------KLTSLKELRLYNN-QLKRVPEGAF 177 (270)
T ss_dssp SSCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTTTT
T ss_pred cCCCEEECCCC-ccCeeCHHH-hCcCcCCCEEECCCCc-CCccCHhHcc-------CCcccceeEecCC-cCcEeChhHh
Confidence 89999999986 554432222 2467999999999985 5432211122 5899999999995 6665433334
Q ss_pred cCCCCCCceEEeecceeccCCCchhHHHHhhhCCCce-EeccCccccccc
Q 011445 427 KRPSFRGLHWLGIGQTRLASKGNPVITEIHNERPWLT-FCLDGCEIGCHD 475 (485)
Q Consensus 427 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~ 475 (485)
. .+++|+.|++++|.+...... .....+.++ +.+.+|++.++.
T Consensus 178 ~--~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 178 D--KLTELKTLKLDNNQLKRVPEG----AFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp T--TCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCBCCSS
T ss_pred c--cCCCcCEEECCCCcCCcCCHH----HhccccCCCEEEecCCCeeCCC
Confidence 3 688999999999997754222 223345554 789999998875
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=9.9e-13 Score=117.30 Aligned_cols=179 Identities=10% Similarity=0.009 Sum_probs=84.9
Q ss_pred CCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCcc
Q 011445 241 PCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 320 (485)
Q Consensus 241 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~ 320 (485)
+++|+.|+++++..++......+..+++|++|++++|+.++......+..+++|++|++++|.+... .. ...+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l--p~-~~~l~~L~ 130 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF--PD-LTKVYSTD 130 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC--CC-CTTCCBCC
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc--cc-cccccccc
Confidence 3444444444432222222223445566666666553344433333445566666666666644431 11 12345555
Q ss_pred ---EEEccCCCCCChhhHHhHhhhcCCCCCCcc-EEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHh
Q 011445 321 ---NLCLRGCKRVTDKGISHLLCVGGTISQSLT-TLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALAR 396 (485)
Q Consensus 321 ---~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 396 (485)
.|+++++..+.......+ ..+++|+ .|+++++ .++......+ .. ++|+.|++++|..++......+.
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~-----~~l~~L~~~L~l~~n-~l~~i~~~~~-~~-~~L~~L~L~~n~~l~~i~~~~~~- 201 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAF-----QGLCNETLTLKLYNN-GFTSVQGYAF-NG-TKLDAVYLNKNKYLTVIDKDAFG- 201 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTT-----TTTBSSEEEEECCSC-CCCEECTTTT-TT-CEEEEEECTTCTTCCEECTTTTT-
T ss_pred cccEEECCCCcchhhcCcccc-----cchhcceeEEEcCCC-CCcccCHhhc-CC-CCCCEEEcCCCCCcccCCHHHhh-
Confidence 666666522432221111 2456666 7777664 4432211111 12 56777777766434322111122
Q ss_pred hCCCCcCC-CCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeeccee
Q 011445 397 KQPDQEKS-KQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTR 443 (485)
Q Consensus 397 ~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~ 443 (485)
.+ ++|+.|+++++ .++... ...+++|+.|++.++.
T Consensus 202 ------~l~~~L~~L~l~~N-~l~~l~-----~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 202 ------GVYSGPSLLDVSQT-SVTALP-----SKGLEHLKELIARNTW 237 (239)
T ss_dssp ------TCSBCCSEEECTTC-CCCCCC-----CTTCTTCSEEECTTC-
T ss_pred ------ccccCCcEEECCCC-ccccCC-----hhHhccCceeeccCcc
Confidence 35 67777777773 444311 1245677777776654
No 98
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=8.4e-10 Score=103.73 Aligned_cols=166 Identities=14% Similarity=0.081 Sum_probs=110.5
Q ss_pred hhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHh-cCCCccEEEccCCCC--CChh---hHH
Q 011445 263 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQ-GNLPIMNLCLRGCKR--VTDK---GIS 336 (485)
Q Consensus 263 l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~--l~~~---~~~ 336 (485)
+..+|+|+.|.++++..+. +..+ ..++|++|++..+.+++..+..+.. .+|+|++|+|+.+.+ ..+. .+.
T Consensus 168 l~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 4466788888887642221 1222 3788999999888888888877764 589999998863211 1111 122
Q ss_pred hHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHh--hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccC
Q 011445 337 HLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA--AGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN 414 (485)
Q Consensus 337 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 414 (485)
.+. ....+|+|+.|++.+| .+++.+...+.. .+++|+.|+++.| .+++.+...+..... .+++|+.|++++
T Consensus 244 ~~l--~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~---~l~~L~~L~L~~ 316 (362)
T 2ra8_A 244 PLF--SKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVD---KIKHLKFINMKY 316 (362)
T ss_dssp GGS--CTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHH---HHTTCSEEECCS
T ss_pred HHH--hcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcc---cCCcceEEECCC
Confidence 222 1134789999999887 677666566654 3678999999776 488888777765211 478899999988
Q ss_pred CCCCCHHHHHhhcCCCCCCceEEeeccee
Q 011445 415 CIGLSVDSLRWVKRPSFRGLHWLGIGQTR 443 (485)
Q Consensus 415 c~~l~~~~~~~l~~~~~~~L~~L~l~~~~ 443 (485)
| .+++.++..+.. .+ ...++++.++
T Consensus 317 n-~i~d~~~~~l~~-al--g~~~~~~~~~ 341 (362)
T 2ra8_A 317 N-YLSDEMKKELQK-SL--PMKIDVSDSQ 341 (362)
T ss_dssp B-BCCHHHHHHHHH-HC--CSEEECCSBC
T ss_pred C-cCCHHHHHHHHH-Hc--CCEEEecCCc
Confidence 6 788888888761 12 2457777665
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.07 E-value=3.4e-10 Score=103.83 Aligned_cols=169 Identities=23% Similarity=0.202 Sum_probs=90.1
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCcc
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 174 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 174 (485)
..+++|++|+++++.+... ..+ ..+++|++|++++| .++... .+..+++|+.|+++++.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~-~~l~~L~~L~L~~n---------~l~~~~--~l~~l~~L~~L~l~~n~------- 101 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGI-QYLPNVTKLFLNGN---------KLTDIK--PLANLKNLGWLFLDENK------- 101 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTG-GGCTTCCEEECCSS---------CCCCCG--GGTTCTTCCEEECCSSC-------
T ss_pred hhcCcccEEEccCCCcccC--hhH-hcCCCCCEEEccCC---------ccCCCc--ccccCCCCCEEECCCCc-------
Confidence 4577888888887766543 223 44788888888885 333322 26777888888887754
Q ss_pred CccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCC
Q 011445 175 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 254 (485)
Q Consensus 175 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 254 (485)
+.+. .. ...+++|+.|+++++ .+... . .+..+++|+.|+++++. +
T Consensus 102 --l~~~--~~-l~~l~~L~~L~L~~n-~i~~~--~-~l~~l~~L~~L~l~~n~-l------------------------- 146 (291)
T 1h6t_A 102 --VKDL--SS-LKDLKKLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGNNK-I------------------------- 146 (291)
T ss_dssp --CCCG--GG-GTTCTTCCEEECTTS-CCCCC--G-GGGGCTTCCEEECCSSC-C-------------------------
T ss_pred --CCCC--hh-hccCCCCCEEECCCC-cCCCC--h-hhcCCCCCCEEEccCCc-C-------------------------
Confidence 2221 11 235567777777665 22221 1 13345566666665553 1
Q ss_pred CCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCC
Q 011445 255 ITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCK 328 (485)
Q Consensus 255 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 328 (485)
+.. ..+..+++|+.|+++++ .+++.. .+..+++|+.|++++|.+++.. . ...+++|+.|+++++.
T Consensus 147 -~~~--~~l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~L~~N~i~~l~--~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 147 -TDI--TVLSRLTKLDTLSLEDN-QISDIV--PLAGLTKLQNLYLSKNHISDLR--A-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp -CCC--GGGGGCTTCSEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCBCG--G-GTTCTTCSEEEEEEEE
T ss_pred -Ccc--hhhccCCCCCEEEccCC-ccccch--hhcCCCccCEEECCCCcCCCCh--h-hccCCCCCEEECcCCc
Confidence 111 22344555555555553 333221 1445556666666655554421 1 2235566666665543
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.05 E-value=6e-12 Score=112.19 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=37.6
Q ss_pred CCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCC
Q 011445 98 FNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTR 165 (485)
Q Consensus 98 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 165 (485)
+++++|+++++.++......+ ..+++|++|++++|. .++......+..+++|+.|++++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~--------~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDV--------TLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCS--------SCCEECTTTEESCTTCCEEEEEE
T ss_pred CcccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCC--------CcceeCHhHcCCCcCCcEEECCC
Confidence 478888888777655433233 347888888888752 24443334566777888888865
No 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.05 E-value=2.2e-11 Score=111.67 Aligned_cols=202 Identities=14% Similarity=0.046 Sum_probs=135.0
Q ss_pred HhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCC
Q 011445 213 LSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLR 292 (485)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~ 292 (485)
..+++++.++++++. ++. ++ ....+.++.|+++++. ++......+..+++|+.|+++++ .++.. .....++
T Consensus 7 ~~l~~l~~l~~~~~~-l~~--ip--~~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~ 77 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTA--LP--PDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKL--QVDGTLP 77 (290)
T ss_dssp ECSTTCCEEECTTSC-CSS--CC--SCCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTS-CCCEE--ECCSCCT
T ss_pred cccCCccEEECCCCC-CCc--CC--CCCCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCC-ccCcc--cCCCCCC
Confidence 345889999998874 221 10 1123689999999875 55444456778999999999984 55432 2236789
Q ss_pred CCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhC
Q 011445 293 KLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG 372 (485)
Q Consensus 293 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 372 (485)
+|+.|++++|.+... ......+++|+.|+++++. ++......+ ..+++|+.|+++++ .++..... ....+
T Consensus 78 ~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~l~~N~-l~~l~~~~~-----~~l~~L~~L~L~~N-~l~~~~~~-~~~~l 147 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNR-LTSLPLGAL-----RGLGELQELYLKGN-ELKTLPPG-LLTPT 147 (290)
T ss_dssp TCCEEECCSSCCSSC--CCCTTTCTTCCEEECCSSC-CCCCCSSTT-----TTCTTCCEEECTTS-CCCCCCTT-TTTTC
T ss_pred cCCEEECCCCcCCcC--chhhccCCCCCEEECCCCc-CcccCHHHH-----cCCCCCCEEECCCC-CCCccChh-hcccc
Confidence 999999999976632 1222457899999999886 543222222 36789999999986 55532221 12357
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 373 IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 373 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
++|+.|++++|. ++......+. .+++|+.|+++++ .++...... ...++|+.|++++|++.
T Consensus 148 ~~L~~L~L~~N~-l~~l~~~~~~-------~l~~L~~L~L~~N-~l~~ip~~~---~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 148 PKLEKLSLANNN-LTELPAGLLN-------GLENLDTLLLQEN-SLYTIPKGF---FGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTCCEEECTTSC-CSCCCTTTTT-------TCTTCCEEECCSS-CCCCCCTTT---TTTCCCSEEECCSCCBC
T ss_pred cCCCEEECCCCc-CCccCHHHhc-------CcCCCCEEECCCC-cCCccChhh---cccccCCeEEeCCCCcc
Confidence 899999999885 5422111111 5899999999994 666322111 23568999999999976
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.05 E-value=1.5e-10 Score=116.71 Aligned_cols=167 Identities=26% Similarity=0.211 Sum_probs=96.6
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCC
Q 011445 214 SCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRK 293 (485)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~ 293 (485)
.+++|+.|+++++.. ... . -...+++|+.|++++|. +.... .+..+++|+.|+++++ .+.. +..+..+++
T Consensus 41 ~L~~L~~L~l~~n~i-~~l--~-~l~~l~~L~~L~Ls~N~-l~~~~--~l~~l~~L~~L~Ls~N-~l~~--l~~l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIANNSDI-KSV--Q-GIQYLPNVTKLFLNGNK-LTDIK--PLTNLKNLGWLFLDEN-KIKD--LSSLKDLKK 110 (605)
T ss_dssp HHTTCCCCBCTTCCC-CCC--T-TGGGCTTCCEEECTTSC-CCCCG--GGGGCTTCCEEECCSS-CCCC--CTTSTTCTT
T ss_pred cCCCCCEEECcCCCC-CCC--h-HHccCCCCCEEEeeCCC-CCCCh--hhccCCCCCEEECcCC-CCCC--ChhhccCCC
Confidence 348888888888742 211 1 13457788888887765 33221 2667777888887774 4433 335566777
Q ss_pred CCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCC
Q 011445 294 LTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGI 373 (485)
Q Consensus 294 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 373 (485)
|+.|++++|.+.+. ..+ ..+++|+.|++++|. +... ..+. .+++|+.|+|++| .+++... ...++
T Consensus 111 L~~L~Ls~N~l~~l--~~l-~~l~~L~~L~Ls~N~-l~~l--~~l~-----~l~~L~~L~Ls~N-~l~~~~~---l~~l~ 175 (605)
T 1m9s_A 111 LKSLSLEHNGISDI--NGL-VHLPQLESLYLGNNK-ITDI--TVLS-----RLTKLDTLSLEDN-QISDIVP---LAGLT 175 (605)
T ss_dssp CCEEECTTSCCCCC--GGG-GGCTTCSEEECCSSC-CCCC--GGGG-----SCTTCSEEECCSS-CCCCCGG---GTTCT
T ss_pred CCEEEecCCCCCCC--ccc-cCCCccCEEECCCCc-cCCc--hhhc-----ccCCCCEEECcCC-cCCCchh---hccCC
Confidence 77777777766542 222 246777777777665 4332 2222 5667777777765 4443211 23566
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCC
Q 011445 374 GIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNC 415 (485)
Q Consensus 374 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c 415 (485)
+|+.|++++|. +++. ..+. .+++|+.|++++|
T Consensus 176 ~L~~L~Ls~N~-i~~l--~~l~-------~l~~L~~L~L~~N 207 (605)
T 1m9s_A 176 KLQNLYLSKNH-ISDL--RALA-------GLKNLDVLELFSQ 207 (605)
T ss_dssp TCCEEECCSSC-CCBC--GGGT-------TCTTCSEEECCSE
T ss_pred CCCEEECcCCC-CCCC--hHHc-------cCCCCCEEEccCC
Confidence 67777776664 4432 1122 3666666666664
No 103
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=6.7e-10 Score=104.39 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhh--CCCCCCEEEcc
Q 011445 210 AILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLA--SSRNLEVLDLG 275 (485)
Q Consensus 210 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~~L~l~ 275 (485)
.++..+|+|+.|.++++..+.. .. ...++|++|++..|. ++..++..+. .+|+|+.|+|+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l---~~--~~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSI---GK--KPRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBC---CS--CBCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCCcee---cc--ccCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEe
Confidence 4455566666666665521110 00 024566666666543 5555555554 46677776664
No 104
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.04 E-value=3.7e-09 Score=89.66 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=68.3
Q ss_pred cCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHh---hCCCCcEEEecCCCCCCHHHH
Q 011445 315 GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA---AGIGIIDLCVRSCFYVTDASV 391 (485)
Q Consensus 315 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~ 391 (485)
.+++|++|++++|..+++.+...++... ...++|++|++++| .+++.+...+.. ..++|++|++++|. +++.+.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 110 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence 3455555555554225544444433211 12456666666665 566655554433 24567777776663 666666
Q ss_pred HHHHhhCCCCcCCCCCcEEec--cCCCCCCHHHHHhhcC--CCCCCceEEeecceecc
Q 011445 392 EALARKQPDQEKSKQLRRLDL--CNCIGLSVDSLRWVKR--PSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 392 ~~l~~~~~~~~~~~~L~~L~l--~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~~~~~ 445 (485)
..++.... ..++|++|++ ++ +.+++.+...+.. ...++|++|++++|.+.
T Consensus 111 ~~l~~~L~---~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQ---SNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGG---GCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHH---hCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 66665444 4666777777 44 4666666544431 13466777777777655
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.03 E-value=3.8e-11 Score=107.79 Aligned_cols=158 Identities=16% Similarity=0.107 Sum_probs=80.3
Q ss_pred CCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCC
Q 011445 267 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 346 (485)
Q Consensus 267 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 346 (485)
+.++.|+++++ .+.......+..+++|++|++++|.+.......+ ..+++|+.|+++++. ++......+ ..+
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-----~~l 106 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQ-LASLPLGVF-----DHL 106 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSC-CCCCCTTTT-----TTC
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-ccCCcCCEEECCCCc-ccccChhHh-----ccc
Confidence 34555555542 3333222334455555555555554443221111 124556666665554 322111111 245
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhh
Q 011445 347 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 426 (485)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 426 (485)
++|+.|+++++ .++...... ...+++|++|++++|. ++......+. .+++|+.|+++++ .++......+
T Consensus 107 ~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~ 175 (251)
T 3m19_A 107 TQLDKLYLGGN-QLKSLPSGV-FDRLTKLKELRLNTNQ-LQSIPAGAFD-------KLTNLQTLSLSTN-QLQSVPHGAF 175 (251)
T ss_dssp TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTTTT
T ss_pred CCCCEEEcCCC-cCCCcChhH-hccCCcccEEECcCCc-CCccCHHHcC-------cCcCCCEEECCCC-cCCccCHHHH
Confidence 66666666664 443221111 1245777777777774 4322111122 4778888888874 5654333333
Q ss_pred cCCCCCCceEEeecceecc
Q 011445 427 KRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 427 ~~~~~~~L~~L~l~~~~~~ 445 (485)
. .+++|+.|++++|++.
T Consensus 176 ~--~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 176 D--RLGKLQTITLFGNQFD 192 (251)
T ss_dssp T--TCTTCCEEECCSCCBC
T ss_pred h--CCCCCCEEEeeCCcee
Confidence 3 5778888888888875
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.98 E-value=5.5e-10 Score=112.64 Aligned_cols=171 Identities=22% Similarity=0.220 Sum_probs=92.9
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCcc
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTF 174 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 174 (485)
..+++|+.|+++++.+.... .+ ..+++|+.|+|++| .+.... .+..+++|+.|+|++|..
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~Ls~N---------~l~~~~--~l~~l~~L~~L~Ls~N~l------ 99 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GI-QYLPNVTKLFLNGN---------KLTDIK--PLTNLKNLGWLFLDENKI------ 99 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TG-GGCTTCCEEECTTS---------CCCCCG--GGGGCTTCCEEECCSSCC------
T ss_pred hcCCCCCEEECcCCCCCCCh--HH-ccCCCCCEEEeeCC---------CCCCCh--hhccCCCCCEEECcCCCC------
Confidence 44667777777766554321 23 34777777777774 222221 156677777777776541
Q ss_pred CccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCC
Q 011445 175 KRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRL 254 (485)
Q Consensus 175 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 254 (485)
..+. . ...+++|+.|+++++. +.. +.. +..+++|+.|++++|. +... .....+++|+.|++++|.
T Consensus 100 ~~l~-----~-l~~l~~L~~L~Ls~N~-l~~--l~~-l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~- 164 (605)
T 1m9s_A 100 KDLS-----S-LKDLKKLKSLSLEHNG-ISD--ING-LVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ- 164 (605)
T ss_dssp CCCT-----T-STTCTTCCEEECTTSC-CCC--CGG-GGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC-
T ss_pred CCCh-----h-hccCCCCCEEEecCCC-CCC--Ccc-ccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc-
Confidence 1111 1 1245667777777653 222 111 4456677777777664 2221 223456667777776654
Q ss_pred CCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCC
Q 011445 255 ITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADIT 305 (485)
Q Consensus 255 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~ 305 (485)
+.... .+..+++|+.|+++++ .+.+ +..+..+++|+.|++++|.+.
T Consensus 165 l~~~~--~l~~l~~L~~L~Ls~N-~i~~--l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 165 ISDIV--PLAGLTKLQNLYLSKN-HISD--LRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CCCCG--GGTTCTTCCEEECCSS-CCCB--CGGGTTCTTCSEEECCSEEEE
T ss_pred CCCch--hhccCCCCCEEECcCC-CCCC--ChHHccCCCCCEEEccCCcCc
Confidence 32221 1556667777777664 4433 234556667777777666443
No 107
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.96 E-value=7.1e-09 Score=87.91 Aligned_cols=126 Identities=19% Similarity=0.191 Sum_probs=66.5
Q ss_pred cCCCCCCEEEcCCC-CCChHHHHHHHh---cCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHH
Q 011445 289 SCLRKLTALNLTGA-DITDSGLSILAQ---GNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDG 364 (485)
Q Consensus 289 ~~~~~L~~L~l~~~-~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~ 364 (485)
...++|++|++++| .+.+.++..+.. ..++|++|++++|. +++.+...++... ...++|++|+++++ .+++.+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L-~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEML-KVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHH-HHCSSCCEEECCSS-CCCHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHH-HhCCCcCEEECcCC-cCCHHH
Confidence 34555555555555 555555444432 23455556655554 5555544443111 12355666666664 566666
Q ss_pred HHHHHhh---CCCCcEEEe--cCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHH
Q 011445 365 ILTIAAA---GIGIIDLCV--RSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDS 422 (485)
Q Consensus 365 ~~~l~~~---~~~L~~L~l--~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 422 (485)
...+... .++|++|++ ++| .+++.+...+..... ..++|++|++++| .+.+.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~---~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLE---KNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHH---HCSSCCEEECCCS-SHHHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHH---hCCCcCEEeccCC-CCChHH
Confidence 5555433 356666666 445 366666555554333 3566677776664 454443
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.95 E-value=1.4e-10 Score=104.16 Aligned_cols=111 Identities=14% Similarity=0.093 Sum_probs=43.8
Q ss_pred hCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcC
Q 011445 264 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGG 343 (485)
Q Consensus 264 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 343 (485)
..+++|++|+++++ .+.......+..+++|++|++++|.+.......+ ..+++|++|+++++. ++......+
T Consensus 56 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~----- 127 (251)
T 3m19_A 56 RGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF-DHLTQLDKLYLGGNQ-LKSLPSGVF----- 127 (251)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTT-----
T ss_pred cCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHh-cccCCCCEEEcCCCc-CCCcChhHh-----
Confidence 34444555554442 3332222223344555555555544332211111 124455555555443 221111111
Q ss_pred CCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCC
Q 011445 344 TISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 384 (485)
Q Consensus 344 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 384 (485)
..+++|+.|+++++ .++......+ ..+++|+.|++++|.
T Consensus 128 ~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 128 DRLTKLKELRLNTN-QLQSIPAGAF-DKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred ccCCcccEEECcCC-cCCccCHHHc-CcCcCCCEEECCCCc
Confidence 13445555555553 3332111111 234555556555553
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.88 E-value=1.4e-09 Score=98.10 Aligned_cols=148 Identities=14% Similarity=0.189 Sum_probs=81.0
Q ss_pred CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCC
Q 011445 265 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGT 344 (485)
Q Consensus 265 ~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 344 (485)
.+++|+.|+++++ .++. +..+..+++|+.|++++|.+.+... ...+++|+.|+++++. ++. +..+.
T Consensus 39 ~l~~L~~L~l~~n-~i~~--l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~-l~~--l~~~~----- 104 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQS--LAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR-LKN--LNGIP----- 104 (263)
T ss_dssp HHTTCSEEECTTS-CCCC--CTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC-CSC--CTTCC-----
T ss_pred hcCcCcEEECcCC-Cccc--chHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc-cCC--cCccc-----
Confidence 3456666666653 3332 2244556666666666665554332 2346666666666654 332 11111
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHH
Q 011445 345 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 424 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 424 (485)
. ++|+.|+++++ .+++. .. ...+++|+.|++++|. +++. ..+. .+++|+.|++++| .+++. .
T Consensus 105 ~-~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N~-i~~~--~~l~-------~l~~L~~L~L~~N-~i~~~--~ 166 (263)
T 1xeu_A 105 S-ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNNK-LKSI--VMLG-------FLSKLEVLDLHGN-EITNT--G 166 (263)
T ss_dssp C-SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTSC-CCBC--GGGG-------GCTTCCEEECTTS-CCCBC--T
T ss_pred c-CcccEEEccCC-ccCCC--hh-hcCcccccEEECCCCc-CCCC--hHHc-------cCCCCCEEECCCC-cCcch--H
Confidence 2 66777777765 44442 11 2346677777777664 4432 1222 3677777777774 55543 2
Q ss_pred hhcCCCCCCceEEeecceeccC
Q 011445 425 WVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 425 ~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
.+ ..+++|+.|++++|++..
T Consensus 167 ~l--~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 167 GL--TRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TS--TTCCCCCEEEEEEEEEEC
T ss_pred Hh--ccCCCCCEEeCCCCcccC
Confidence 33 256777777777777653
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.85 E-value=3e-09 Score=86.94 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=5.0
Q ss_pred CCCCCEEEcCCC
Q 011445 291 LRKLTALNLTGA 302 (485)
Q Consensus 291 ~~~L~~L~l~~~ 302 (485)
+++|+.|++++|
T Consensus 41 l~~L~~L~l~~n 52 (149)
T 2je0_A 41 FEELEFLSTINV 52 (149)
T ss_dssp CTTCCEEECTTS
T ss_pred cCCCcEEECcCC
Confidence 344444444443
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=9.5e-10 Score=102.90 Aligned_cols=205 Identities=14% Similarity=0.105 Sum_probs=94.3
Q ss_pred CCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCc
Q 011445 97 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 176 (485)
Q Consensus 97 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 176 (485)
|++|+.|++.. .+.......+ ..|++|+++++.++ .+...+...+..+.++..+........ .....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF-~~~~~L~~l~l~~n---------~i~~i~~~aF~~~~~l~~l~~~~~~~~--~~~~~ 166 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAF-KGCDNLKICQIRKK---------TAPNLLPEALADSVTAIFIPLGSSDAY--RFKNR 166 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTT-TTCTTCCEEEBCCS---------SCCEECTTSSCTTTCEEEECTTCTHHH--HTSTT
T ss_pred cCCCcEEECCc-cccchhHHHh-hcCcccceEEcCCC---------CccccchhhhcCCCceEEecCcchhhh--hcccc
Confidence 88888888875 4433322223 45788888888874 333333344555666655554321000 00000
Q ss_pred cCcHhHHHHhhcCCCcc-EEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCC
Q 011445 177 VNDMGMFLLSEGCKGLE-SVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLI 255 (485)
Q Consensus 177 ~~~~~l~~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 255 (485)
+.+. ....|..|+ .+.+.....+... +........+++.+.+.+. +....+..+...+++|+.+++.++. +
T Consensus 167 i~~~----~f~~~~~L~~~i~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~-i 238 (329)
T 3sb4_A 167 WEHF----AFIEGEPLETTIQVGAMGKLEDE-IMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTN-A 238 (329)
T ss_dssp TTTS----CEEESCCCEEEEEECTTCCHHHH-HHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBC-C
T ss_pred cccc----ccccccccceeEEecCCCcHHHH-HhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCC-c
Confidence 0000 012345555 4555443222111 1100011245566666553 4444444444556666666666532 3
Q ss_pred CHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCC-EEEcCCCCCChHHHHHHHhcCCCccEEEccC
Q 011445 256 TSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLT-ALNLTGADITDSGLSILAQGNLPIMNLCLRG 326 (485)
Q Consensus 256 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 326 (485)
+..+..++..|++|+.+++.. .+...+-..+..|++|+ .+.+.. .+..-+-..+ ..|++|+.+++..
T Consensus 239 ~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF-~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 239 TTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF-MGCDNLRYVLATG 306 (329)
T ss_dssp CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTT-TTCTTEEEEEECS
T ss_pred ceecHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc-cceEEchhhh-hCCccCCEEEeCC
Confidence 333333455566666666654 13333333445566666 666654 2221111111 1355555555543
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.81 E-value=1.9e-09 Score=88.05 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=58.6
Q ss_pred hCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhh-HHhHhhhc
Q 011445 264 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKG-ISHLLCVG 342 (485)
Q Consensus 264 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~ 342 (485)
..+++|+.|+++++ .++.. ..+..+++|++|++++|.+... +......+++|+.|+++++. ++... ...+.
T Consensus 39 ~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~--- 110 (149)
T 2je0_A 39 DEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLK--- 110 (149)
T ss_dssp TTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGG---
T ss_pred hhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHh---
Confidence 44566666666664 34332 4455667777777777666543 22222336677777777665 44422 12222
Q ss_pred CCCCCCccEEecCCCCCCCHHHH--HHHHhhCCCCcEEEec
Q 011445 343 GTISQSLTTLDLGYMPGISDDGI--LTIAAAGIGIIDLCVR 381 (485)
Q Consensus 343 ~~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~ 381 (485)
.+++|+.|+++++ .+++... ......+++|+.|+++
T Consensus 111 --~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 111 --KLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp --GCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred --hCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 5667777777765 4443321 1233456777777664
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.80 E-value=4.4e-10 Score=94.00 Aligned_cols=135 Identities=20% Similarity=0.156 Sum_probs=74.7
Q ss_pred CCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHh
Q 011445 291 LRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAA 370 (485)
Q Consensus 291 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 370 (485)
.++|+.|++++|.+.+..+......+++|+.|++++|. +... ..+ ..+++|+.|+++++ .++.. +.....
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~-----~~l~~L~~L~Ls~N-~l~~~-~~~~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNL-----PKLPKLKKLELSEN-RIFGG-LDMLAE 92 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSC-----CCCSSCCEEEEESC-CCCSC-CCHHHH
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhh-----ccCCCCCEEECcCC-cCchH-HHHHHh
Confidence 35566666665554422222222235666666666654 4332 112 25667777777775 44432 223334
Q ss_pred hCCCCcEEEecCCCCCCHHH-HHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHH---HhhcCCCCCCceEEeecceeccC
Q 011445 371 AGIGIIDLCVRSCFYVTDAS-VEALARKQPDQEKSKQLRRLDLCNCIGLSVDSL---RWVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 371 ~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
.+++|+.|++++|. +++.. +..+. .+++|+.|++++| .++.... ..+ ..+|+|+.|++++|.+..
T Consensus 93 ~l~~L~~L~Ls~N~-l~~~~~~~~l~-------~l~~L~~L~l~~N-~l~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 93 KLPNLTHLNLSGNK-LKDISTLEPLK-------KLECLKSLDLFNC-EVTNLNDYRESVF--KLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HCTTCCEEECBSSS-CCSSGGGGGGS-------SCSCCCEEECCSS-GGGTSTTHHHHHH--TTCSSCCEETTEETTSCB
T ss_pred hCCCCCEEeccCCc-cCcchhHHHHh-------cCCCCCEEEeeCC-cCcchHHHHHHHH--HhCccCcEecCCCCChhh
Confidence 57788888887774 54421 12222 4788888888875 4443221 233 367888888888887553
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.79 E-value=4.3e-11 Score=113.11 Aligned_cols=228 Identities=12% Similarity=0.085 Sum_probs=111.6
Q ss_pred ccccceeccccCccccchhHHHhhhhccccccCCCCccccccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCC
Q 011445 53 LPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED 132 (485)
Q Consensus 53 ~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 132 (485)
+|..++.|+|++..+..++ ..+|.++++|++|+|+.|.+...........++++.++.+.+
T Consensus 28 l~~~l~~L~Ls~N~i~~i~-------------------~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQ-------------------KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp CCTTCSEEEEESCCCSEEC-------------------TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred cCCCCCEEEccCCcCCCcC-------------------HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4556777777766543222 234567888888888877653321111223466666654443
Q ss_pred CCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHH
Q 011445 133 RPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAIL 212 (485)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 212 (485)
+ +.++......+..+++|+.|+++++.. ..+.+.. .....++..|++.++..+.......+.
T Consensus 89 ~--------N~l~~l~~~~f~~l~~L~~L~l~~n~l------~~~~~~~----~~~~~~l~~l~l~~~~~i~~l~~~~f~ 150 (350)
T 4ay9_X 89 A--------NNLLYINPEAFQNLPNLQYLLISNTGI------KHLPDVH----KIHSLQKVLLDIQDNINIHTIERNSFV 150 (350)
T ss_dssp E--------TTCCEECTTSBCCCTTCCEEEEEEECC------SSCCCCT----TCCBSSCEEEEEESCTTCCEECTTSST
T ss_pred C--------CcccccCchhhhhcccccccccccccc------ccCCchh----hcccchhhhhhhccccccccccccchh
Confidence 3 445554455567788888888877541 1121110 012234556666554333211111111
Q ss_pred HhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCC
Q 011445 213 LSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLR 292 (485)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~ 292 (485)
.....++.|+++++. ++.... ......+|++|++.+++.++......+..++
T Consensus 151 ~~~~~l~~L~L~~N~---------------------------i~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 151 GLSFESVILWLNKNG---------------------------IQEIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp TSBSSCEEEECCSSC---------------------------CCEECT-TSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred hcchhhhhhcccccc---------------------------ccCCCh-hhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 111234444444442 211100 1112345666666554444433333445666
Q ss_pred CCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCC
Q 011445 293 KLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGY 356 (485)
Q Consensus 293 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 356 (485)
+|+.|++++|.++.... ..+.+|++|.+.++..+... ..+ ..+++|+.+++.+
T Consensus 203 ~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~l--P~l-----~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKL--PTL-----EKLVALMEASLTY 255 (350)
T ss_dssp CCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCC--CCT-----TTCCSCCEEECSC
T ss_pred ccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcC--CCc-----hhCcChhhCcCCC
Confidence 77777777765543211 12456666666555433211 111 2466777777764
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.77 E-value=7.9e-10 Score=99.74 Aligned_cols=17 Identities=47% Similarity=0.706 Sum_probs=7.5
Q ss_pred cCCCCCCEEEcCCCCCC
Q 011445 289 SCLRKLTALNLTGADIT 305 (485)
Q Consensus 289 ~~~~~L~~L~l~~~~l~ 305 (485)
..+++|+.|++++|.+.
T Consensus 147 ~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp GGCTTCCEEECTTSCCC
T ss_pred ccCCCCCEEECCCCcCc
Confidence 33444444444444433
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.73 E-value=8.8e-10 Score=95.75 Aligned_cols=151 Identities=14% Similarity=0.046 Sum_probs=65.6
Q ss_pred CCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCC
Q 011445 267 RNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTIS 346 (485)
Q Consensus 267 ~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 346 (485)
++|++|+++++ .++......+..+++|++|++++|.+....... ...+++|++|+++++. +.......+ ..+
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~~~-----~~l 99 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-FNKLTSLTYLNLSTNQ-LQSLPNGVF-----DKL 99 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTT-----TTC
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhh-cCCCCCcCEEECCCCc-CCccCHhHh-----cCc
Confidence 34555555442 333222222344555555555555443221111 1124555555555543 321111111 134
Q ss_pred CCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhh
Q 011445 347 QSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWV 426 (485)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l 426 (485)
++|++|+++++ .++..... ....+++|+.|++++|. ++......+. .+++|+.|++++++ +
T Consensus 100 ~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~~~~~~~-------~l~~L~~L~l~~N~-~-------- 160 (208)
T 2o6s_A 100 TQLKELALNTN-QLQSLPDG-VFDKLTQLKDLRLYQNQ-LKSVPDGVFD-------RLTSLQYIWLHDNP-W-------- 160 (208)
T ss_dssp TTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTT-------TCTTCCEEECCSCC-B--------
T ss_pred cCCCEEEcCCC-cCcccCHh-HhccCCcCCEEECCCCc-cceeCHHHhc-------cCCCccEEEecCCC-e--------
Confidence 55666666554 33321111 11234566666666653 3321111111 36666667666642 1
Q ss_pred cCCCCCCceEEeecceecc
Q 011445 427 KRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 427 ~~~~~~~L~~L~l~~~~~~ 445 (485)
...+++|+.|+++.|.+.
T Consensus 161 -~~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 161 -DCTCPGIRYLSEWINKHS 178 (208)
T ss_dssp -CCCTTTTHHHHHHHHHCT
T ss_pred -ecCCCCHHHHHHHHHhCC
Confidence 124566666666666554
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.72 E-value=2.6e-10 Score=114.22 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=66.1
Q ss_pred CCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCE
Q 011445 217 SLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTA 296 (485)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~ 296 (485)
.|+.|+++++. ++. ++. +..+++|+.|+++++. ++.. ...+..+++|+.|+++++ .++. +..+..+++|+.
T Consensus 442 ~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~Ls~N~-l~~l-p~~~~~l~~L~~L~Ls~N-~l~~--lp~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDLSHNR-LRAL-PPALAALRCLEVLQASDN-ALEN--VDGVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTSC-CSS--CCC-GGGGTTCCEEECCSSC-CCCC-CGGGGGCTTCCEEECCSS-CCCC--CGGGTTCSSCCE
T ss_pred CceEEEecCCC-CCC--CcC-ccccccCcEeecCccc-cccc-chhhhcCCCCCEEECCCC-CCCC--CcccCCCCCCcE
Confidence 46666666653 221 111 3345666666666654 3311 124556777777777763 4443 235666777777
Q ss_pred EEcCCCCCChHH-HHHHHhcCCCccEEEccCCCCCChh--hHHhHhhhcCCCCCCccEEec
Q 011445 297 LNLTGADITDSG-LSILAQGNLPIMNLCLRGCKRVTDK--GISHLLCVGGTISQSLTTLDL 354 (485)
Q Consensus 297 L~l~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~~~~~L~~L~l 354 (485)
|++++|.++... ...+. .+++|+.|+++++. ++.. ....+. ..+|+|+.|++
T Consensus 513 L~Ls~N~l~~~~~p~~l~-~l~~L~~L~L~~N~-l~~~~~~~~~l~----~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNS-LCQEEGIQERLA----EMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCCSSSTTGGGG-GCTTCCEEECTTSG-GGGSSSCTTHHH----HHCTTCSEEEC
T ss_pred EECCCCCCCCCCCcHHHh-cCCCCCEEEecCCc-CCCCccHHHHHH----HHCcccCccCC
Confidence 777777665442 22333 36777777777765 3221 111222 23567777653
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=7.2e-10 Score=103.73 Aligned_cols=86 Identities=10% Similarity=0.124 Sum_probs=41.8
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCc-EEeccCCCCCCHHHH
Q 011445 345 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLR-RLDLCNCIGLSVDSL 423 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~ 423 (485)
.+++|+.++++++ +++..+-..+ ..|++|+.|++.++ ++..+-..+. +|++|+ .+++.+ +++..+-
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF-~~~~~L~~l~l~~n--i~~I~~~aF~-------~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTF-AQKKYLLKIKLPHN--LKTIGQRVFS-------NCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTT-TTCTTCCEEECCTT--CCEECTTTTT-------TCTTCCEEEEECT--TCCEECT
T ss_pred hcCCCeEEECCCC-CcceecHhhh-hCCCCCCEEECCcc--cceehHHHhh-------CChhccEEEEEcc--cceEEch
Confidence 3566666666653 3332222222 34566666666553 3222222222 366666 666654 4444333
Q ss_pred HhhcCCCCCCceEEeecceecc
Q 011445 424 RWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 424 ~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
..+. .|++|+.+++..+.+.
T Consensus 291 ~aF~--~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 291 GAFM--GCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTTT--TCTTEEEEEECSSCCC
T ss_pred hhhh--CCccCCEEEeCCCccC
Confidence 3443 5666666666555544
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.68 E-value=6.1e-09 Score=86.98 Aligned_cols=110 Identities=24% Similarity=0.182 Sum_probs=54.3
Q ss_pred hCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhh-HHhHhhhc
Q 011445 264 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKG-ISHLLCVG 342 (485)
Q Consensus 264 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~ 342 (485)
..+++|+.|+++++ .++.. ..+..+++|++|++++|.+... +......+++|+.|+++++. +++.. +..+.
T Consensus 46 ~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~--- 117 (168)
T 2ell_A 46 AEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK--- 117 (168)
T ss_dssp GGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS---
T ss_pred HhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh---
Confidence 34566666666664 34332 4455666677777766655542 12222235666666666664 43321 12222
Q ss_pred CCCCCCccEEecCCCCCCCHHHH--HHHHhhCCCCcEEEecCCC
Q 011445 343 GTISQSLTTLDLGYMPGISDDGI--LTIAAAGIGIIDLCVRSCF 384 (485)
Q Consensus 343 ~~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~ 384 (485)
.+++|+.|+++++ .++.... ......+++|+.|++++|.
T Consensus 118 --~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 118 --KLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp --SCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred --cCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 4556666666654 3322211 1122344555555555543
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.64 E-value=4.6e-09 Score=99.58 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=40.5
Q ss_pred CCccEEEcccCCCCCHHHHHHhh-CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCcc
Q 011445 242 CALVEVRLLWCRLITSETVKKLA-SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIM 320 (485)
Q Consensus 242 ~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~ 320 (485)
+.++.|+++++. ++......+. .+++|+.|+++++ .++......+..+++|++|++++|.+.......+ ..+++|+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF-SDLQALE 115 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHh-CCCcCCC
Confidence 345666666543 3332222233 5566666666552 4443333334555666666666655443221111 2345556
Q ss_pred EEEccCCC
Q 011445 321 NLCLRGCK 328 (485)
Q Consensus 321 ~L~l~~~~ 328 (485)
.|+++++.
T Consensus 116 ~L~L~~N~ 123 (361)
T 2xot_A 116 VLLLYNNH 123 (361)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 66655554
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.60 E-value=6.1e-09 Score=98.72 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=110.6
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHc-CCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCC
Q 011445 216 HSLKKFEVRSASFLSDLAFHDLTG-VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKL 294 (485)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L 294 (485)
+.++.|+++++. ++.... ..+. .+++|+.|+++++. ++......+..+++|++|+++++ .+.......+..+++|
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSC-CCEECT-TSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCC-CCccCh-hhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCC
Confidence 568999999985 332111 1122 67899999999865 55444445778999999999984 5655444456788999
Q ss_pred CEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCC
Q 011445 295 TALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIG 374 (485)
Q Consensus 295 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 374 (485)
+.|++++|.+.......+. .+++|+.|+++++. +.......+. ....+++|+.|+++++ .++......+. .++.
T Consensus 115 ~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~-l~~l~~~~~~--~~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l~~ 188 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQ-ISRFPVELIK--DGNKLPKLMLLDLSSN-KLKKLPLTDLQ-KLPA 188 (361)
T ss_dssp CEEECCSSCCCEECTTTTT-TCTTCCEEECCSSC-CCSCCGGGTC------CTTCCEEECCSS-CCCCCCHHHHH-HSCH
T ss_pred CEEECCCCcccEECHHHhC-CcccCCEEECCCCc-CCeeCHHHhc--CcccCCcCCEEECCCC-CCCccCHHHhh-hccH
Confidence 9999999987754333333 47999999999886 5432222221 0024789999999986 66654433332 4454
Q ss_pred --CcEEEecCCCCCCHHHH
Q 011445 375 --IIDLCVRSCFYVTDASV 391 (485)
Q Consensus 375 --L~~L~l~~~~~l~~~~~ 391 (485)
|+.|++.+|+...+-.+
T Consensus 189 ~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 189 WVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp HHHTTEECCSSCEECCHHH
T ss_pred hhcceEEecCCCccCCcCc
Confidence 48899999885444433
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.60 E-value=1.3e-08 Score=89.67 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=74.6
Q ss_pred CCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhh
Q 011445 292 RKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA 371 (485)
Q Consensus 292 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 371 (485)
++|+.|++++|.+.......+ ..+++|+.|+++++. +.......+ ..+++|+.|+++++ .++..... ....
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~-l~~i~~~~~-----~~l~~L~~L~Ls~N-~l~~l~~~-~~~~ 110 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQ-LGALPVGVF-----DSLTQLTVLDLGTN-QLTVLPSA-VFDR 110 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTT-----TTCTTCCEEECCSS-CCCCCCTT-TTTT
T ss_pred CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCC-CCCcChhhc-----ccCCCcCEEECCCC-cCCccChh-HhCc
Confidence 455555555554433211111 124555555555544 321111111 24556666666654 34322111 1124
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceeccCC--Cc
Q 011445 372 GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLASK--GN 449 (485)
Q Consensus 372 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~~~--~~ 449 (485)
+++|+.|++++|. ++... ..+ . .+++|+.|+++++ +++......+ ..+++|+.|++++|++.-. ..
T Consensus 111 l~~L~~L~Ls~N~-l~~lp-~~~-~------~l~~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c~~~ 178 (229)
T 3e6j_A 111 LVHLKELFMCCNK-LTELP-RGI-E------RLTHLTHLALDQN-QLKSIPHGAF--DRLSSLTHAYLFGNPWDCECRDI 178 (229)
T ss_dssp CTTCCEEECCSSC-CCSCC-TTG-G------GCTTCSEEECCSS-CCCCCCTTTT--TTCTTCCEEECTTSCBCTTBGGG
T ss_pred chhhCeEeccCCc-ccccC-ccc-c------cCCCCCEEECCCC-cCCccCHHHH--hCCCCCCEEEeeCCCccCCcchh
Confidence 5677777776664 33110 111 1 4778888888874 6654322233 2577888888888886532 12
Q ss_pred hhHHHHhhhCCCceEeccC
Q 011445 450 PVITEIHNERPWLTFCLDG 468 (485)
Q Consensus 450 ~~~~~~~~~~~~l~~~~~~ 468 (485)
..+..+...........++
T Consensus 179 ~~l~~~~~~~~~~~~~~~g 197 (229)
T 3e6j_A 179 MYLRNWVADHTSIAMRWDG 197 (229)
T ss_dssp HHHHHHHHHCGGGEEEESS
T ss_pred HHHHHHHHhCccccccccC
Confidence 2334444444433333333
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.59 E-value=4.7e-09 Score=91.90 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=48.1
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHH
Q 011445 345 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 424 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 424 (485)
.+++|+.|+++++ .++..... ....+++|+.|++++|. ++......+. .+++|+.|+++++ .++.....
T Consensus 78 ~l~~L~~L~Ls~N-~l~~l~~~-~f~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~ 146 (220)
T 2v9t_B 78 GLRSLNSLVLYGN-KITELPKS-LFEGLFSLQLLLLNANK-INCLRVDAFQ-------DLHNLNLLSLYDN-KLQTIAKG 146 (220)
T ss_dssp TCSSCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTT-------TCTTCCEEECCSS-CCSCCCTT
T ss_pred CCcCCCEEECCCC-cCCccCHh-HccCCCCCCEEECCCCC-CCEeCHHHcC-------CCCCCCEEECCCC-cCCEECHH
Confidence 3455666666554 33321111 11245667777776664 3322111122 4777888888774 55543333
Q ss_pred hhcCCCCCCceEEeecceecc
Q 011445 425 WVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 425 ~l~~~~~~~L~~L~l~~~~~~ 445 (485)
.+. .+++|+.|++++|++.
T Consensus 147 ~~~--~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 147 TFS--PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTT--TCTTCCEEECCSSCEE
T ss_pred HHh--CCCCCCEEEeCCCCcC
Confidence 333 5778888888888865
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.59 E-value=6.1e-09 Score=91.15 Aligned_cols=134 Identities=12% Similarity=0.062 Sum_probs=67.4
Q ss_pred CCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhC
Q 011445 293 KLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAG 372 (485)
Q Consensus 293 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 372 (485)
.+++|++++|.++..........+++|+.|+++++. ++......+ ..+++|+.|+++++ .++......+ ..+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l 104 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAF-----EGASGVNEILLTSN-RLENVQHKMF-KGL 104 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTT-----TTCTTCCEEECCSS-CCCCCCGGGG-TTC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHh-----CCCCCCCEEECCCC-ccCccCHhHh-cCC
Confidence 345555555544332111111234555555555543 332211111 24556666666654 3433211111 345
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 373 IGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 373 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
++|++|++++|. ++......+. .+++|+.|+++++ +++......+. .+++|+.|++++|++.
T Consensus 105 ~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 105 ESLKTLMLRSNR-ITCVGNDSFI-------GLSSVRLLSLYDN-QITTVAPGAFD--TLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCEEECTTSC-CCCBCTTSST-------TCTTCSEEECTTS-CCCCBCTTTTT--TCTTCCEEECCSCCEE
T ss_pred cCCCEEECCCCc-CCeECHhHcC-------CCccCCEEECCCC-cCCEECHHHhc--CCCCCCEEEecCcCCc
Confidence 677777777664 3321111111 4778888888874 66654333443 5778888888888876
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.57 E-value=1.3e-08 Score=88.96 Aligned_cols=112 Identities=21% Similarity=0.180 Sum_probs=51.3
Q ss_pred hhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhc
Q 011445 263 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG 342 (485)
Q Consensus 263 l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 342 (485)
+..+++|+.|+++++ .++......+..+++|++|++++|.++..... ....+++|+.|+++++. +.......+.
T Consensus 52 ~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~N~-l~~~~~~~~~--- 125 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKS-LFEGLFSLQLLLLNANK-INCLRVDAFQ--- 125 (220)
T ss_dssp STTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTTT---
T ss_pred hhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCHh-HccCCCCCCEEECCCCC-CCEeCHHHcC---
Confidence 344556666666552 34333333445556666666666544422111 11235556666666554 3322111111
Q ss_pred CCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCC
Q 011445 343 GTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 384 (485)
Q Consensus 343 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 384 (485)
.+++|+.|+++++ .++......+ ..+++|+.|++++|+
T Consensus 126 --~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 126 --DLHNLNLLSLYDN-KLQTIAKGTF-SPLRAIQTMHLAQNP 163 (220)
T ss_dssp --TCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred --CCCCCCEEECCCC-cCCEECHHHH-hCCCCCCEEEeCCCC
Confidence 3456666666554 3332211111 234556666666554
No 126
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.56 E-value=8.4e-07 Score=74.56 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=72.3
Q ss_pred HHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhh---CCCCcEEEecCCCCC
Q 011445 310 SILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYV 386 (485)
Q Consensus 310 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l 386 (485)
..+...-+.|++|+++++..+++.+...++.... ....|+.|+|++| .+++.+...+++. -+.|++|+|++|. +
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~-I 110 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-L 110 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-C
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc-C
Confidence 3333334555566655443355555554443222 3456666666665 5666655554432 3567777776663 7
Q ss_pred CHHHHHHHHhhCCCCcCCCCCcEEeccCCC--CCCHHHHHhhc--CCCCCCceEEeecceecc
Q 011445 387 TDASVEALARKQPDQEKSKQLRRLDLCNCI--GLSVDSLRWVK--RPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~--~l~~~~~~~l~--~~~~~~L~~L~l~~~~~~ 445 (485)
++.+...++.++. .-+.|++|+++++. .+.+.+...+. ...-+.|+.|+++.+.+.
T Consensus 111 g~~Ga~ala~aL~---~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 111 TPELLARLLRSTL---VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CHHHHHHHHHHTT---TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CHHHHHHHHHHHh---hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 7777777776655 55667777776542 45555433332 013456777777666544
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.54 E-value=2.4e-08 Score=86.56 Aligned_cols=112 Identities=14% Similarity=0.055 Sum_probs=54.6
Q ss_pred hhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhc
Q 011445 263 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVG 342 (485)
Q Consensus 263 l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 342 (485)
+..+++|++|+++++ .+.......+..+++|++|++++|.+.......+ ..+++|+.|+++++. ++......+
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~---- 120 (208)
T 2o6s_A 48 FDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF-DKLTQLKELALNTNQ-LQSLPDGVF---- 120 (208)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCCTTTT----
T ss_pred hcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHh-cCccCCCEEEcCCCc-CcccCHhHh----
Confidence 344556666666552 3332222233455666666666665443221111 235666666666554 332111111
Q ss_pred CCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCC
Q 011445 343 GTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCF 384 (485)
Q Consensus 343 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 384 (485)
..+++|+.|+++++ .++..... ....+++|+.|++++|+
T Consensus 121 -~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 121 -DKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp -TTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSCC
T ss_pred -ccCCcCCEEECCCC-ccceeCHH-HhccCCCccEEEecCCC
Confidence 24566777777664 34322111 12345677777777765
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.49 E-value=3e-08 Score=87.29 Aligned_cols=59 Identities=10% Similarity=-0.025 Sum_probs=27.0
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccC
Q 011445 345 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN 414 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 414 (485)
.+++|+.|+++++ .++.. ..-...+++|+.|++++|. ++......+. .+++|+.|++.+
T Consensus 110 ~l~~L~~L~Ls~N-~l~~l--p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~l~~ 168 (229)
T 3e6j_A 110 RLVHLKELFMCCN-KLTEL--PRGIERLTHLTHLALDQNQ-LKSIPHGAFD-------RLSSLTHAYLFG 168 (229)
T ss_dssp TCTTCCEEECCSS-CCCSC--CTTGGGCTTCSEEECCSSC-CCCCCTTTTT-------TCTTCCEEECTT
T ss_pred cchhhCeEeccCC-ccccc--CcccccCCCCCEEECCCCc-CCccCHHHHh-------CCCCCCEEEeeC
Confidence 3455555555553 33321 0111345666666666653 3321111111 356666666665
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.48 E-value=2.9e-08 Score=86.84 Aligned_cols=13 Identities=8% Similarity=-0.199 Sum_probs=6.5
Q ss_pred CCCCcEEEecCCC
Q 011445 372 GIGIIDLCVRSCF 384 (485)
Q Consensus 372 ~~~L~~L~l~~~~ 384 (485)
+++|+.|++++|+
T Consensus 152 l~~L~~L~L~~N~ 164 (220)
T 2v70_A 152 LHSLSTLNLLANP 164 (220)
T ss_dssp CTTCCEEECCSCC
T ss_pred CCCCCEEEecCcC
Confidence 3445555555544
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.47 E-value=6.9e-08 Score=81.17 Aligned_cols=111 Identities=19% Similarity=0.179 Sum_probs=71.1
Q ss_pred ccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCC
Q 011445 93 SYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQG 172 (485)
Q Consensus 93 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 172 (485)
.+.++++|++|+++++.+... ..+....++|++|++++| .++.. ..+..+++|+.|+++++.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N---------~l~~~--~~l~~l~~L~~L~Ls~N~----- 75 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN---------EIRKL--DGFPLLRRLKTLLVNNNR----- 75 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS---------CCCEE--CCCCCCSSCCEEECCSSC-----
T ss_pred hcCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCC---------CCCcc--cccccCCCCCEEECCCCc-----
Confidence 346688999999998887643 335454569999999995 44432 567788999999998864
Q ss_pred ccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 011445 173 TFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS 227 (485)
Q Consensus 173 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 227 (485)
+..+... +...+++|+.|+++++ .++.......+..+++|+.|+++++.
T Consensus 76 -l~~~~~~----~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 76 -ICRIGEG----LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp -CCEECSC----HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred -ccccCcc----hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence 1222211 1235678888888775 33321110124456777777777764
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.47 E-value=1.2e-09 Score=103.12 Aligned_cols=227 Identities=13% Similarity=0.034 Sum_probs=139.2
Q ss_pred CCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCC
Q 011445 190 KGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNL 269 (485)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 269 (485)
+++++|+++++ +++.... ..+.++++|+.|+++++....... ...+..++++.++.+..+..+.......+..+++|
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESC-CCSEECT-TSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCEEEccCC-cCCCcCH-HHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 58999999985 4442211 124667999999999985322100 11234567777765554444554444456788999
Q ss_pred CEEEccCCCCCcHHHhhcccCCCCCCEEEcCCC-CCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCC
Q 011445 270 EVLDLGGCKSIADTCLRSISCLRKLTALNLTGA-DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQS 348 (485)
Q Consensus 270 ~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 348 (485)
++|+++++ .+............++..|++.++ .+.......+......++.|+++++. ++...... ....+
T Consensus 107 ~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~------f~~~~ 178 (350)
T 4ay9_X 107 QYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSA------FNGTQ 178 (350)
T ss_dssp CEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTS------STTEE
T ss_pred cccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhh------ccccc
Confidence 99999884 443322222234566778888664 44433222222223568899999876 54321111 23568
Q ss_pred ccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcC
Q 011445 349 LTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKR 428 (485)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~ 428 (485)
|+.+++.+++.++...... ...+++|+.|++++|. ++. ++. +.+.+|+.|.+.++.+++... .+
T Consensus 179 L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N~-l~~-----lp~-----~~~~~L~~L~~l~~~~l~~lP--~l-- 242 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDV-FHGASGPVILDISRTR-IHS-----LPS-----YGLENLKKLRARSTYNLKKLP--TL-- 242 (350)
T ss_dssp EEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTSC-CCC-----CCS-----SSCTTCCEEECTTCTTCCCCC--CT--
T ss_pred hhHHhhccCCcccCCCHHH-hccCcccchhhcCCCC-cCc-----cCh-----hhhccchHhhhccCCCcCcCC--Cc--
Confidence 9999998766665432222 2457899999999986 442 111 147789999988887766422 22
Q ss_pred CCCCCceEEeeccee
Q 011445 429 PSFRGLHWLGIGQTR 443 (485)
Q Consensus 429 ~~~~~L~~L~l~~~~ 443 (485)
..+++|+.+++.++.
T Consensus 243 ~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 243 EKLVALMEASLTYPS 257 (350)
T ss_dssp TTCCSCCEEECSCHH
T ss_pred hhCcChhhCcCCCCc
Confidence 368899999997543
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.46 E-value=2.4e-07 Score=92.43 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=82.6
Q ss_pred CCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCc
Q 011445 97 SFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKR 176 (485)
Q Consensus 97 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 176 (485)
+++|++|++++|.++... ..+++|++|++++| .++.. ..+.. +|+.|+++++. +..
T Consensus 79 ~~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N---------~l~~i--p~l~~--~L~~L~Ls~N~------l~~ 134 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP-----ELPASLEYLDACDN---------RLSTL--PELPA--SLKHLDVDNNQ------LTM 134 (571)
T ss_dssp CTTCSEEECCSSCCSCCC-----CCCTTCCEEECCSS---------CCSCC--CCCCT--TCCEEECCSSC------CSC
T ss_pred cCCCCEEECcCCCCcccc-----cccCCCCEEEccCC---------CCCCc--chhhc--CCCEEECCCCc------CCC
Confidence 356777777766665321 33677777777774 22221 11222 67777776653 111
Q ss_pred cCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCCCCCHHHHHHHHcCCCCccEEEcccCCCCC
Q 011445 177 VNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSASFLSDLAFHDLTGVPCALVEVRLLWCRLIT 256 (485)
Q Consensus 177 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 256 (485)
++. .+++|+.|+++++ .++. +.. .+++|+.|++++|. ++. +.. + .++|+.|++++|. ++
T Consensus 135 lp~--------~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-L~~--lp~-l--~~~L~~L~Ls~N~-L~ 193 (571)
T 3cvr_A 135 LPE--------LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQ-LTF--LPE-L--PESLEALDVSTNL-LE 193 (571)
T ss_dssp CCC--------CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSC--CCC-C--CTTCCEEECCSSC-CS
T ss_pred CCC--------cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCC-CCC--cch-h--hCCCCEEECcCCC-CC
Confidence 221 3566777777664 2221 111 34667777777664 221 111 1 1566777776653 22
Q ss_pred HHHHHHhhC-----CCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHH
Q 011445 257 SETVKKLAS-----SRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSIL 312 (485)
Q Consensus 257 ~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l 312 (485)
.... +.. .+.|+.|+++++ .++.. ...+..+++|+.|++++|.++......+
T Consensus 194 ~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 194 SLPA--VPVRNHHSEETEIFFRCREN-RITHI-PENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp SCCC--CC--------CCEEEECCSS-CCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred chhh--HHHhhhcccccceEEecCCC-cceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 1110 111 122267777663 44421 1223446677777777776665544433
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.44 E-value=1.6e-07 Score=78.95 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=5.3
Q ss_pred CCCCCCEEEcCCC
Q 011445 290 CLRKLTALNLTGA 302 (485)
Q Consensus 290 ~~~~L~~L~l~~~ 302 (485)
.+++|++|++++|
T Consensus 62 ~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 62 LLRRLKTLLVNNN 74 (176)
T ss_dssp CCSSCCEEECCSS
T ss_pred cCCCCCEEECCCC
Confidence 3344444444443
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.41 E-value=1.1e-07 Score=94.92 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=28.9
Q ss_pred CccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCcc
Q 011445 99 NLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCR 167 (485)
Q Consensus 99 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (485)
+++.|+++++.++.. +..+ +++|++|++++| .++... ..+++|+.|+++++.
T Consensus 60 ~L~~L~Ls~n~L~~l-p~~l---~~~L~~L~Ls~N---------~l~~ip----~~l~~L~~L~Ls~N~ 111 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL-PDNL---PPQITVLEITQN---------ALISLP----ELPASLEYLDACDNR 111 (571)
T ss_dssp TCSEEECCSSCCSCC-CSCC---CTTCSEEECCSS---------CCSCCC----CCCTTCCEEECCSSC
T ss_pred CccEEEeCCCCCCcc-CHhH---cCCCCEEECcCC---------CCcccc----cccCCCCEEEccCCC
Confidence 677777776665431 1111 466777777774 233111 345677777776653
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.40 E-value=6.3e-09 Score=104.26 Aligned_cols=124 Identities=15% Similarity=0.113 Sum_probs=83.6
Q ss_pred CCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccE
Q 011445 242 CALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMN 321 (485)
Q Consensus 242 ~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~ 321 (485)
..|+.|+++++. ++.. ..+..+++|+.|+++++ .++ .....++.+++|+.|++++|.++.. ..+ ..+++|+.
T Consensus 441 ~~L~~L~Ls~n~-l~~l--p~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l--p~l-~~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTVL--CHLEQLLLVTHLDLSHN-RLR-ALPPALAALRCLEVLQASDNALENV--DGV-ANLPRLQE 512 (567)
T ss_dssp TTCSEEECTTSC-CSSC--CCGGGGTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGG-TTCSSCCE
T ss_pred cCceEEEecCCC-CCCC--cCccccccCcEeecCcc-ccc-ccchhhhcCCCCCEEECCCCCCCCC--ccc-CCCCCCcE
Confidence 358889998865 4432 23677889999999884 555 2234567889999999999877753 233 34888999
Q ss_pred EEccCCCCCChhh-HHhHhhhcCCCCCCccEEecCCCCCCCHH--HHHHHHhhCCCCcEEEe
Q 011445 322 LCLRGCKRVTDKG-ISHLLCVGGTISQSLTTLDLGYMPGISDD--GILTIAAAGIGIIDLCV 380 (485)
Q Consensus 322 L~l~~~~~l~~~~-~~~l~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l 380 (485)
|+++++. ++... ...+. .+++|+.|+++++ .++.. ....+...+|+|+.|++
T Consensus 513 L~Ls~N~-l~~~~~p~~l~-----~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNR-LQQSAAIQPLV-----SCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSC-CCSSSTTGGGG-----GCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCC-CCCCCCcHHHh-----cCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 9998876 54432 23333 5789999999886 44432 23334456788888864
No 136
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.37 E-value=1.7e-06 Score=72.66 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=98.4
Q ss_pred hhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhh---CCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcE
Q 011445 333 KGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAA---GIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRR 409 (485)
Q Consensus 333 ~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~ 409 (485)
..+..+. ..-+.|+.|++++++.+.+.+...+++. -+.|+.|++++|. ++|.+...++.++. ..++|+.
T Consensus 31 ~~l~~ll----~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~---~N~tL~~ 102 (197)
T 1pgv_A 31 SCINRLR----EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIE---TSPSLRV 102 (197)
T ss_dssp HHHHHHH----TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHH---HCSSCCE
T ss_pred HHHHHHH----hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHh---cCCccCe
Confidence 4455555 4678999999998668999988888765 3789999999995 99999888886655 6889999
Q ss_pred EeccCCCCCCHHHHHhhcC--CCCCCceEEeecce---eccCCCchhHHHHhhhCCCce-EeccCcccc
Q 011445 410 LDLCNCIGLSVDSLRWVKR--PSFRGLHWLGIGQT---RLASKGNPVITEIHNERPWLT-FCLDGCEIG 472 (485)
Q Consensus 410 L~l~~c~~l~~~~~~~l~~--~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 472 (485)
|+|++ +.+++.|...+.. ..-+.|+.|++++| .++......+.+..+..+.++ +.+..+..+
T Consensus 103 L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 103 LNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp EECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred EecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 99999 6999999887652 23568999999865 434333345666667777776 666555544
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=7.1e-09 Score=99.51 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=23.9
Q ss_pred hCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccC
Q 011445 264 ASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRG 326 (485)
Q Consensus 264 ~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 326 (485)
..+..++.+.+... ........+..++.++.+......+.+.. ...|.+|+.+.+..
T Consensus 250 ~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~~~----F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 250 YGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPEKT----FYGCSSLTEVKLLD 306 (394)
T ss_dssp TTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECTTT----TTTCTTCCEEEECT
T ss_pred cccccceeEEcCCC--cceeeccccccccccceeccCceeecccc----cccccccccccccc
Confidence 34555555555431 11111122334555555554443322221 12355666666543
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.22 E-value=1.5e-07 Score=89.94 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=28.4
Q ss_pred cccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeC
Q 011445 92 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLT 164 (485)
Q Consensus 92 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 164 (485)
.+|.+|++|+.++++.+.+.......+ . +.+|+++.+..+ ++..+-..+..+++|+.+++.
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF-~-~~~L~~l~lp~~----------l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTF-V-YAGIEEVLLPVT----------LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTT-T-TCCCSEEECCTT----------CCEECTTTTTTCTTCCCEECC
T ss_pred HHhhCcccCCeeecCCCcceEechhhE-e-ecccCEEEeCCc----------hheehhhHhhCCCCCCEEecC
Confidence 445555666666665444332222222 1 455555555431 233333344555566666554
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.17 E-value=6.9e-07 Score=76.13 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=31.1
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCc
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRC 166 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 166 (485)
..+++|++|+++.|.++......+ ..+++|++|++++| .++......+..+++|+.|+++++
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N---------~l~~~~~~~~~~l~~L~~L~L~~N 112 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGEN---------KIKEISNKMFLGLHQLKTLNLYDN 112 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSC---------CCCEECSSSSTTCTTCCEEECCSS
T ss_pred ccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCC---------cCCccCHHHhcCCCCCCEEECCCC
Confidence 445566666666555544322223 23566666666663 333333333445555566655553
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.17 E-value=6.7e-08 Score=82.99 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=40.9
Q ss_pred cCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcHhHHHHhhcCCCccEEEeCCC
Q 011445 121 SLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDMGMFLLSEGCKGLESVRLGGF 200 (485)
Q Consensus 121 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 200 (485)
.+++|++|++++| .++.. ..+..+++|+.|+++++.. ..+.. ....+++|+.|+++++
T Consensus 46 ~l~~L~~L~ls~n---------~l~~l--~~~~~l~~L~~L~l~~n~l------~~l~~-----~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 46 TLKACKHLALSTN---------NIEKI--SSLSGMENLRILSLGRNLI------KKIEN-----LDAVADTLEELWISYN 103 (198)
T ss_dssp HTTTCSEEECSEE---------EESCC--CCHHHHTTCCEEEEEEEEE------CSCSS-----HHHHHHHCSEEEEEEE
T ss_pred cCCCCCEEECCCC---------CCccc--cccccCCCCCEEECCCCCc------ccccc-----hhhcCCcCCEEECcCC
Confidence 4778888888774 33331 1455667777777766531 11211 1112345666666654
Q ss_pred CCCCHHHHHHHHHhCCCCcEEEecCCC
Q 011445 201 SKVSDAGFAAILLSCHSLKKFEVRSAS 227 (485)
Q Consensus 201 ~~~~~~~~~~~~~~~~~L~~L~l~~~~ 227 (485)
.++. +.. +..+++|+.|+++++.
T Consensus 104 -~l~~--l~~-~~~l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 104 -QIAS--LSG-IEKLVNLRVLYMSNNK 126 (198)
T ss_dssp -ECCC--HHH-HHHHHHSSEEEESEEE
T ss_pred -cCCc--CCc-cccCCCCCEEECCCCc
Confidence 2322 111 3334555555555553
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.12 E-value=1.7e-06 Score=74.10 Aligned_cols=156 Identities=17% Similarity=0.107 Sum_probs=86.6
Q ss_pred hhccccceeeeeecCCCccccc-ccchhhhhcccccceeccccCccccchhHHHhhhhccccccCCCCccccccccCCCc
Q 011445 22 TSCLQLESLSLKIRGFGVEVDA-CAFQSIIFFLPSTIKSLKLQPVLERDAFFLIRRIGRNLMETVQPPILTSSYYSSFNL 100 (485)
Q Consensus 22 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 100 (485)
...+.++.++++.+.+...... ..+...+...+ .++.+++++.....++ .+..+++|
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~-~L~~L~ls~n~l~~l~---------------------~~~~l~~L 72 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLK-ACKHLALSTNNIEKIS---------------------SLSGMENL 72 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT-TCSEEECSEEEESCCC---------------------CHHHHTTC
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCC-CCCEEECCCCCCcccc---------------------ccccCCCC
Confidence 4456677777766543222111 11111222222 3777777765433322 23556788
Q ss_pred cEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCCCccCccCcH
Q 011445 101 RSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQGTFKRVNDM 180 (485)
Q Consensus 101 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 180 (485)
++|++++|.+... ......+++|++|++++| .++.. ..+..+++|+.|+++++. +...
T Consensus 73 ~~L~l~~n~l~~l--~~~~~~~~~L~~L~L~~N---------~l~~l--~~~~~l~~L~~L~l~~N~---------i~~~ 130 (198)
T 1ds9_A 73 RILSLGRNLIKKI--ENLDAVADTLEELWISYN---------QIASL--SGIEKLVNLRVLYMSNNK---------ITNW 130 (198)
T ss_dssp CEEEEEEEEECSC--SSHHHHHHHCSEEEEEEE---------ECCCH--HHHHHHHHSSEEEESEEE---------CCCH
T ss_pred CEEECCCCCcccc--cchhhcCCcCCEEECcCC---------cCCcC--CccccCCCCCEEECCCCc---------CCch
Confidence 8888887666532 223333678888888884 44432 245667788888887754 4432
Q ss_pred hHHHHhhcCCCccEEEeCCCCCCCH---------HHHHHHHHhCCCCcEEE
Q 011445 181 GMFLLSEGCKGLESVRLGGFSKVSD---------AGFAAILLSCHSLKKFE 222 (485)
Q Consensus 181 ~l~~l~~~~~~L~~L~l~~~~~~~~---------~~~~~~~~~~~~L~~L~ 222 (485)
........+++|+.|+++++. +.. ......+..+++|+.|+
T Consensus 131 ~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 131 GEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred hHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 221223467888888888752 211 12233467788999887
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.10 E-value=2.1e-06 Score=73.10 Aligned_cols=14 Identities=7% Similarity=0.237 Sum_probs=7.8
Q ss_pred hCCCCcEEEecCCC
Q 011445 214 SCHSLKKFEVRSAS 227 (485)
Q Consensus 214 ~~~~L~~L~l~~~~ 227 (485)
.+++|+.|+++++.
T Consensus 124 ~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 124 DLSALSHLAIGANP 137 (193)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCccccEEEeCCCC
Confidence 34556666666553
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.05 E-value=1.6e-07 Score=89.76 Aligned_cols=104 Identities=14% Similarity=0.208 Sum_probs=48.1
Q ss_pred HHhCCCCcEEEecCCC--CCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhccc
Q 011445 212 LLSCHSLKKFEVRSAS--FLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSIS 289 (485)
Q Consensus 212 ~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~ 289 (485)
+.+|++|+.+++.++. .+....+ .+.+|+.+.+... +...+..++..|++|+.+.+.. .+...+-..+.
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~ 246 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFR 246 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTT
T ss_pred hhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCccccccc
Confidence 3456666666665431 1111111 1456666666532 3333334455666777776654 22222222222
Q ss_pred CCCCCCEEEcCCCCCChHHHHHHHhcCCCccEEEccCC
Q 011445 290 CLRKLTALNLTGADITDSGLSILAQGNLPIMNLCLRGC 327 (485)
Q Consensus 290 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 327 (485)
. .+|+.+.+..+ +..-+-..+ ..|++|+.+.+.++
T Consensus 247 ~-~~L~~i~lp~~-i~~I~~~aF-~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 247 E-SGITTVKLPNG-VTNIASRAF-YYCPELAEVTTYGS 281 (401)
T ss_dssp T-CCCSEEEEETT-CCEECTTTT-TTCTTCCEEEEESS
T ss_pred c-CCccEEEeCCC-ccEEChhHh-hCCCCCCEEEeCCc
Confidence 3 46666666432 211111111 23666666666543
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.02 E-value=1.1e-07 Score=91.33 Aligned_cols=294 Identities=12% Similarity=0.083 Sum_probs=138.1
Q ss_pred CccccccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCcc
Q 011445 88 PILTSSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCR 167 (485)
Q Consensus 88 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 167 (485)
.+...+|.+|.+|+.+.+..+ ++...-..+ ..|++|+.+++..+ ++..+-..+..+.+|+.+.+...-
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF-~~c~~L~~i~lp~~----------l~~I~~~aF~~c~~L~~i~~p~~l 128 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAF-ENCSKLEIINIPDS----------VKMIGRCTFSGCYALKSILLPLML 128 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTT-TTCTTCCEECCCTT----------CCEECTTTTTTCTTCCCCCCCTTC
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHh-hCCCCCcEEEeCCC----------ceEccchhhcccccchhhcccCce
Confidence 344567788899999988632 322222223 45889999988653 333333445666667666554311
Q ss_pred ccCCCccCccCcHhH------------------HHHhhcCCCccEEEeCCCC-CCCHHHHHHHHHhCCCCcEEEecCCC-
Q 011445 168 HNHQGTFKRVNDMGM------------------FLLSEGCKGLESVRLGGFS-KVSDAGFAAILLSCHSLKKFEVRSAS- 227 (485)
Q Consensus 168 ~~~~~~~~~~~~~~l------------------~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~- 227 (485)
..+....+ ......|.+|+.+.+.... .+.. ..+..|++|+.+.+...-
T Consensus 129 -------~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~----~~F~~c~~L~~i~l~~~~~ 197 (394)
T 4fs7_A 129 -------KSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHN----GLFSGCGKLKSIKLPRNLK 197 (394)
T ss_dssp -------CEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCBCCCCTTCC
T ss_pred -------eeecceeeecccccccccCccccccchhhhcccCCCcEEecCCccceecc----ccccCCCCceEEEcCCCce
Confidence 11111100 0112234445555543211 0111 012334444444443220
Q ss_pred CCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCC--CCC
Q 011445 228 FLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA--DIT 305 (485)
Q Consensus 228 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~--~l~ 305 (485)
.+.+ ..+..+..|+.+.+...... .+ .....+.+|+.+.+.. .+...+-..+..+..++.+.+..+ .+.
T Consensus 198 ~I~~----~~F~~~~~L~~i~~~~~~~~--i~-~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~ 268 (394)
T 4fs7_A 198 IIRD----YCFAECILLENMEFPNSLYY--LG-DFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLRIG 268 (394)
T ss_dssp EECT----TTTTTCTTCCBCCCCTTCCE--EC-TTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCEEC
T ss_pred EeCc----hhhccccccceeecCCCceE--ee-hhhcccCCCceEEECC--CceecccccccccccceeEEcCCCcceee
Confidence 0010 01123344444433321100 00 0011234555555533 111111222335666666666543 122
Q ss_pred hHHHHHHHhcCCCccEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCC
Q 011445 306 DSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFY 385 (485)
Q Consensus 306 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 385 (485)
... ...|..++.+...... +.+. .+ ..+.+|+.+.+.. +++..+-.. ...|++|+.+++...
T Consensus 269 ~~~----F~~~~~l~~~~~~~~~-i~~~----~F----~~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~~-- 330 (394)
T 4fs7_A 269 GSL----FYNCSGLKKVIYGSVI-VPEK----TF----YGCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPYL-- 330 (394)
T ss_dssp SCT----TTTCTTCCEEEECSSE-ECTT----TT----TTCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCTT--
T ss_pred ccc----cccccccceeccCcee-eccc----cc----ccccccccccccc--ccceechhh-hcCCCCCCEEEeCCc--
Confidence 111 1235666666654332 2211 11 3577888888864 233222122 246788898888543
Q ss_pred CCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecce
Q 011445 386 VTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQT 442 (485)
Q Consensus 386 l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~ 442 (485)
++..+-.++. +|++|+.+.+.. +++..+-..+. .|++|+.+++..+
T Consensus 331 v~~I~~~aF~-------~c~~L~~i~lp~--~l~~I~~~aF~--~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 331 VEEIGKRSFR-------GCTSLSNINFPL--SLRKIGANAFQ--GCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTTT-------TCTTCCEECCCT--TCCEECTTTBT--TCTTCCEEEEEGG
T ss_pred ccEEhHHhcc-------CCCCCCEEEECc--cccEehHHHhh--CCCCCCEEEECCC
Confidence 3322222222 588899998865 36655555554 7889999988654
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.01 E-value=3.7e-06 Score=71.61 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=15.2
Q ss_pred CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCC
Q 011445 265 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGAD 303 (485)
Q Consensus 265 ~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 303 (485)
.+++|+.|+++++ .++......+..+++|++|++++|.
T Consensus 52 ~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 52 NYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 3444444444442 3332222223344444444444443
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.99 E-value=6.8e-06 Score=68.85 Aligned_cols=37 Identities=24% Similarity=0.074 Sum_probs=16.6
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCC
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED 132 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 132 (485)
..+++|++|++++|.++......+ ..+++|++|++++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVF-DKLTKLTILYLHE 85 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCS
T ss_pred cCcccccEEECCCCcceEeChhHc-cCCCccCEEECCC
Confidence 344555555555544432211111 2345555555555
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.98 E-value=3.5e-06 Score=70.70 Aligned_cols=39 Identities=26% Similarity=0.180 Sum_probs=15.8
Q ss_pred CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCC
Q 011445 265 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI 304 (485)
Q Consensus 265 ~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l 304 (485)
.+++|++|+++++ .++......+..+++|+.|++++|.+
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 50 KLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCc
Confidence 3444444444442 23222112233444455555544433
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.95 E-value=1.5e-06 Score=73.97 Aligned_cols=10 Identities=10% Similarity=-0.050 Sum_probs=5.8
Q ss_pred CccEEEeCCC
Q 011445 191 GLESVRLGGF 200 (485)
Q Consensus 191 ~L~~L~l~~~ 200 (485)
+|+.|+++++
T Consensus 30 ~l~~L~l~~n 39 (192)
T 1w8a_A 30 HTTELLLNDN 39 (192)
T ss_dssp TCSEEECCSC
T ss_pred CCCEEECCCC
Confidence 5666666553
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.77 E-value=1.9e-06 Score=82.54 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=6.3
Q ss_pred cCCCCcEEecCC
Q 011445 121 SLPFLVELDLED 132 (485)
Q Consensus 121 ~~~~L~~L~L~~ 132 (485)
.|.+|+++.+..
T Consensus 85 ~C~~L~~i~~~~ 96 (394)
T 4gt6_A 85 NCTSLKRVTIQD 96 (394)
T ss_dssp TCTTCCEEEEGG
T ss_pred CCccCceEeecC
Confidence 355555555543
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.75 E-value=2.4e-05 Score=64.99 Aligned_cols=37 Identities=24% Similarity=0.128 Sum_probs=15.7
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCC
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED 132 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 132 (485)
..+++|++|+|+.|.++......+ ..+++|++|+|++
T Consensus 51 ~~l~~L~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L~~ 87 (170)
T 3g39_A 51 DRLTQLTRLDLDNNQLTVLPAGVF-DKLTQLTQLSLND 87 (170)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCS
T ss_pred cCcccCCEEECCCCCcCccChhhc-cCCCCCCEEECCC
Confidence 344455555555444432221111 2244555555554
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.67 E-value=4.2e-05 Score=63.73 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=15.4
Q ss_pred ccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCC
Q 011445 95 YSSFNLRSLSLVLDVITDELLITITASLPFLVELDLED 132 (485)
Q Consensus 95 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 132 (485)
.++++|++|+|++|.++..... ....+++|++|+|++
T Consensus 54 ~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 54 DHLVNLQQLYFNSNKLTAIPTG-VFDKLTQLTQLDLND 90 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred cCCcCCCEEECCCCCCCccChh-HhCCcchhhEEECCC
Confidence 3444555555554444332111 112244555555544
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.58 E-value=8.7e-06 Score=77.89 Aligned_cols=126 Identities=8% Similarity=0.089 Sum_probs=70.3
Q ss_pred HhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCC--CCChHHHHHHHhcCCCccEEEccCCCCCChhhHHhHh
Q 011445 262 KLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGA--DITDSGLSILAQGNLPIMNLCLRGCKRVTDKGISHLL 339 (485)
Q Consensus 262 ~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~--~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~ 339 (485)
++..|..|+.+.+.. .+...+-..+..|++|+.+.+... .+.+.. ...|.+|+.+.+... ++..+-..+
T Consensus 260 aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF- 330 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEG--ITQILDDAF- 330 (394)
T ss_dssp TTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTT--CCEECTTTT-
T ss_pred eeeecccccEEeccc--ccceecCcccccccccccccCCCcccccCcee----ecCCCCcCEEEeCCc--ccEehHhHh-
Confidence 456788888888855 222233344567888888888643 333322 235888999988653 332222222
Q ss_pred hhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccC
Q 011445 340 CVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCN 414 (485)
Q Consensus 340 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 414 (485)
..|.+|+.+.|.. +++..+-..+ ..|++|+.+++.++. .... ... .+.+|+.+.+..
T Consensus 331 ----~~C~~L~~i~ip~--sv~~I~~~aF-~~C~~L~~i~~~~~~----~~~~----~~~---~~~~L~~i~i~~ 387 (394)
T 4gt6_A 331 ----AGCEQLERIAIPS--SVTKIPESAF-SNCTALNNIEYSGSR----SQWN----AIS---TDSGLQNLPVAP 387 (394)
T ss_dssp ----TTCTTCCEEEECT--TCCBCCGGGG-TTCTTCCEEEESSCH----HHHH----TCB---CCCCC-------
T ss_pred ----hCCCCCCEEEECc--ccCEEhHhHh-hCCCCCCEEEECCce----eehh----hhh---ccCCCCEEEeCC
Confidence 3678999999864 3433222222 478899999987653 1121 222 588888888764
No 153
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.42 E-value=4.3e-05 Score=78.99 Aligned_cols=84 Identities=15% Similarity=0.057 Sum_probs=38.5
Q ss_pred cCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCC
Q 011445 239 GVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLP 318 (485)
Q Consensus 239 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 318 (485)
..++.|+.|+++++.. ... ...+..+++|++|+|+++ .++ .....+..+++|+.|+|++|.++.. ...+ ..+++
T Consensus 221 ~~l~~L~~L~Ls~n~l-~~l-~~~~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~-~~l~~ 294 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQI-FNI-SANIFKYDFLTRLYLNGN-SLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAEL-GSCFQ 294 (727)
T ss_dssp -CCCCCCEEECTTSCC-SCC-CGGGGGCCSCSCCBCTTS-CCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSG-GGGTT
T ss_pred ccCCCCcEEECCCCCC-CCC-ChhhcCCCCCCEEEeeCC-cCc-ccChhhhCCCCCCEEeCcCCcCCcc-Chhh-cCCCC
Confidence 3455566666655442 211 112334556666666553 333 1122344556666666666544411 1111 23555
Q ss_pred ccEEEccCCC
Q 011445 319 IMNLCLRGCK 328 (485)
Q Consensus 319 L~~L~l~~~~ 328 (485)
|+.|+|+++.
T Consensus 295 L~~L~L~~N~ 304 (727)
T 4b8c_D 295 LKYFYFFDNM 304 (727)
T ss_dssp CSEEECCSSC
T ss_pred CCEEECCCCC
Confidence 6666665553
No 154
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.36 E-value=2.5e-05 Score=80.78 Aligned_cols=110 Identities=19% Similarity=0.120 Sum_probs=71.7
Q ss_pred cccccCCCccEEEecccCCChHHHHHHHhcCCCCcEEecCCCCCCCcccccccChhHhhhcCCCCCcceEEeCCccccCC
Q 011445 92 SSYYSSFNLRSLSLVLDVITDELLITITASLPFLVELDLEDRPNTEPLARLDLTSSGLQSLGSCHHLTGLSLTRCRHNHQ 171 (485)
Q Consensus 92 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 171 (485)
..+..+++|+.|+|+++.+... ...+. .+++|++|+|++| .++ .....+..+++|+.|+|+++..
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l-~~~~~-~l~~L~~L~Ls~N---------~l~-~lp~~~~~l~~L~~L~Ls~N~l--- 282 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNI-SANIF-KYDFLTRLYLNGN---------SLT-ELPAEIKNLSNLRVLDLSHNRL--- 282 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCC-CGGGG-GCCSCSCCBCTTS---------CCS-CCCGGGGGGTTCCEEECTTSCC---
T ss_pred hhhccCCCCcEEECCCCCCCCC-Chhhc-CCCCCCEEEeeCC---------cCc-ccChhhhCCCCCCEEeCcCCcC---
Confidence 4457788999999998776532 22233 4899999999985 444 2234567889999999988652
Q ss_pred CccCccCcHhHHHHhhcCCCccEEEeCCCCCCCHHHHHHHHHhCCCCcEEEecCCC
Q 011445 172 GTFKRVNDMGMFLLSEGCKGLESVRLGGFSKVSDAGFAAILLSCHSLKKFEVRSAS 227 (485)
Q Consensus 172 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 227 (485)
..+... ...+++|+.|+++++ .++. +..-+..+++|+.|+++++.
T Consensus 283 ---~~lp~~-----~~~l~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 283 ---TSLPAE-----LGSCFQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp ---SSCCSS-----GGGGTTCSEEECCSS-CCCC--CCSSTTSCTTCCCEECTTSC
T ss_pred ---CccChh-----hcCCCCCCEEECCCC-CCCc--cChhhhcCCCccEEeCCCCc
Confidence 222221 235688999999886 3331 22225667899999999885
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.30 E-value=9.4e-05 Score=61.33 Aligned_cols=9 Identities=0% Similarity=-0.005 Sum_probs=3.5
Q ss_pred CCcEEEecC
Q 011445 217 SLKKFEVRS 225 (485)
Q Consensus 217 ~L~~L~l~~ 225 (485)
+|+.|++++
T Consensus 31 ~l~~L~L~~ 39 (170)
T 3g39_A 31 TTQVLYLYD 39 (170)
T ss_dssp TCSEEECCS
T ss_pred CCcEEEcCC
Confidence 333444433
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.26 E-value=0.00011 Score=61.16 Aligned_cols=10 Identities=0% Similarity=0.102 Sum_probs=4.3
Q ss_pred CCcEEEecCC
Q 011445 217 SLKKFEVRSA 226 (485)
Q Consensus 217 ~L~~L~l~~~ 226 (485)
+|+.|+++++
T Consensus 34 ~L~~L~Ls~N 43 (174)
T 2r9u_A 34 DKQRLWLNNN 43 (174)
T ss_dssp TCSEEECCSS
T ss_pred CCcEEEeCCC
Confidence 4444444443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.99 E-value=0.0013 Score=58.33 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=69.1
Q ss_pred cccccccCCCccE--EEecccCCCh--HHHHHHHhcCCCCcEEecCCCCCCCcccccccChh-Hh-hhcCCCCCcceEEe
Q 011445 90 LTSSYYSSFNLRS--LSLVLDVITD--ELLITITASLPFLVELDLEDRPNTEPLARLDLTSS-GL-QSLGSCHHLTGLSL 163 (485)
Q Consensus 90 ~~~~~~~~~~L~~--L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~-~~-~~l~~~~~L~~L~l 163 (485)
+.+.+...+.|+. ++++.|.... ..+..+.+.+|+|++|+|++| .++.. ++ ..+..+++|+.|+|
T Consensus 133 dLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N---------~l~~l~~l~~~~~~l~~L~~L~L 203 (267)
T 3rw6_A 133 DLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN---------RLYRLDDMSSIVQKAPNLKILNL 203 (267)
T ss_dssp ECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS---------CCCCCGGGTTHHHHSTTCCEEEC
T ss_pred CHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC---------CCCCCccchhHHhhCCCCCEEEC
Confidence 3344556666666 5555443211 223334456899999999995 44331 12 23457899999999
Q ss_pred CCccccCCCccCccCcH-hHHHHhhcCCCccEEEeCCCCCCC-----HHHHHHHHHhCCCCcEEEecC
Q 011445 164 TRCRHNHQGTFKRVNDM-GMFLLSEGCKGLESVRLGGFSKVS-----DAGFAAILLSCHSLKKFEVRS 225 (485)
Q Consensus 164 ~~~~~~~~~~~~~~~~~-~l~~l~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~~L~~L~l~~ 225 (485)
+++. +.+. .+..+. .+ +|++|++.+++-.. ......++..+|+|+.|+-..
T Consensus 204 s~N~---------i~~~~~l~~l~-~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 204 SGNE---------LKSERELDKIK-GL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp TTSC---------CCSGGGGGGGT-TS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred CCCc---------cCCchhhhhcc-cC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 8865 2222 222222 23 89999999864321 133456688899999986443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.70 E-value=0.003 Score=56.04 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=57.7
Q ss_pred HhhCCCCcEEEecCCCCCCH-HHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHH-HHHhhcCCCCCCceEEeecceeccC
Q 011445 369 AAAGIGIIDLCVRSCFYVTD-ASVEALARKQPDQEKSKQLRRLDLCNCIGLSVD-SLRWVKRPSFRGLHWLGIGQTRLAS 446 (485)
Q Consensus 369 ~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~~L~~L~l~~~~~~~ 446 (485)
.+.+++|+.|++++|. ++. .++..+.. .+++|+.|+|++ ++++.. .+..+. .+ +|+.|++++|++..
T Consensus 166 ~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~------~l~~L~~L~Ls~-N~i~~~~~l~~l~--~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 166 EENIPELLSLNLSNNR-LYRLDDMSSIVQ------KAPNLKILNLSG-NELKSERELDKIK--GL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHHCTTCCEEECTTSC-CCCCGGGTTHHH------HSTTCCEEECTT-SCCCSGGGGGGGT--TS-CCSEEECTTSTTGG
T ss_pred HhhCCCCCEEECCCCC-CCCCccchhHHh------hCCCCCEEECCC-CccCCchhhhhcc--cC-CcceEEccCCcCcc
Confidence 3567888888888875 443 12222223 478888888888 466653 344443 33 88888888888763
Q ss_pred CC---chhHHHHhhhCCCceEeccCccccc
Q 011445 447 KG---NPVITEIHNERPWLTFCLDGCEIGC 473 (485)
Q Consensus 447 ~~---~~~~~~~~~~~~~l~~~~~~~~~~~ 473 (485)
.. ......+....|.|+. +++.++.+
T Consensus 235 ~~~~~~~y~~~il~~~P~L~~-LDg~~v~p 263 (267)
T 3rw6_A 235 TFRDQSTYISAIRERFPKLLR-LDGHELPP 263 (267)
T ss_dssp GCSSHHHHHHHHHHHCTTCCE-ESSCBCCC
T ss_pred ccCcchhHHHHHHHHCcccCe-ECCcCCCC
Confidence 21 1344566777788775 55555544
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.63 E-value=0.0012 Score=61.69 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=15.7
Q ss_pred CCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCC
Q 011445 265 SSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADI 304 (485)
Q Consensus 265 ~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l 304 (485)
.+++|+.|+|++.+.+.......+..+++|+.|+|++|.+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 68 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcc
Confidence 3344444444422233322222333444444444444433
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.42 E-value=0.0014 Score=61.23 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=41.0
Q ss_pred HHhCCCCcEEEecC-CCCCCHHHHHHHHcCCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccC
Q 011445 212 LLSCHSLKKFEVRS-ASFLSDLAFHDLTGVPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISC 290 (485)
Q Consensus 212 ~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~ 290 (485)
+..+++|+.|++++ +. +.... ...+..+++|+.|+++++. ++......+..+++|+.|+|++ +.++......+..
T Consensus 27 l~~~~~L~~L~l~~~n~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH-LQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQG 102 (347)
T ss_dssp SCSCSCCSEEECCSCSS-CCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCS
T ss_pred CCCCCCeeEEEccCCCC-CCCcC-hhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC-CccceeCHHHccc
Confidence 34446677777765 42 21100 0112345666666666543 3333333445566666666655 2333221112222
Q ss_pred CCCCCEEEcCCCCC
Q 011445 291 LRKLTALNLTGADI 304 (485)
Q Consensus 291 ~~~L~~L~l~~~~l 304 (485)
++ |+.|++.+|.+
T Consensus 103 ~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 103 LS-LQELVLSGNPL 115 (347)
T ss_dssp CC-CCEEECCSSCC
T ss_pred CC-ceEEEeeCCCc
Confidence 22 66666666543
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.96 E-value=0.045 Score=51.52 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=38.2
Q ss_pred CCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCcCCCCCcEEeccCCCCCCHHHHH
Q 011445 345 ISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRSCFYVTDASVEALARKQPDQEKSKQLRRLDLCNCIGLSVDSLR 424 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 424 (485)
.+.+|+.+.+.. +++..+... ...|++|+.+.+.++. ++..+-..+. +|++|+.+.+.. +++..+-.
T Consensus 261 ~~~~l~~i~l~~--~i~~i~~~a-F~~c~~L~~i~l~~~~-i~~I~~~aF~-------~c~~L~~i~lp~--~l~~I~~~ 327 (379)
T 4h09_A 261 NCTALKTLNFYA--KVKTVPYLL-CSGCSNLTKVVMDNSA-IETLEPRVFM-------DCVKLSSVTLPT--ALKTIQVY 327 (379)
T ss_dssp TCTTCCEEEECC--CCSEECTTT-TTTCTTCCEEEECCTT-CCEECTTTTT-------TCTTCCEEECCT--TCCEECTT
T ss_pred eeehhccccccc--cceeccccc-cccccccccccccccc-cceehhhhhc-------CCCCCCEEEcCc--cccEEHHH
Confidence 455666666543 222211111 1345666666665432 2221111122 366677666643 34444434
Q ss_pred hhcCCCCCCceEEeecc
Q 011445 425 WVKRPSFRGLHWLGIGQ 441 (485)
Q Consensus 425 ~l~~~~~~~L~~L~l~~ 441 (485)
.+. .|++|+.+.+..
T Consensus 328 aF~--~C~~L~~i~ip~ 342 (379)
T 4h09_A 328 AFK--NCKALSTISYPK 342 (379)
T ss_dssp TTT--TCTTCCCCCCCT
T ss_pred Hhh--CCCCCCEEEECC
Confidence 443 566666666643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=86.65 E-value=0.19 Score=47.20 Aligned_cols=128 Identities=7% Similarity=0.065 Sum_probs=62.4
Q ss_pred CCCCccEEEcccCCCCCHHHHHHhhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCCCCCChHHHHHHHhcCCCc
Q 011445 240 VPCALVEVRLLWCRLITSETVKKLASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTGADITDSGLSILAQGNLPI 319 (485)
Q Consensus 240 ~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L 319 (485)
.+..|+.+.+... +...+..++..+..|+.+.+.. .++..+-..+..+.+|+.+.+... +...+... ...|++|
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~a-F~~c~~L 288 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLL-CSGCSNL 288 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC-CSEECTTT-TTTCTTC
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCC--CccEeCccccceeehhcccccccc-ceeccccc-ccccccc
Confidence 3456666666432 2222233345667777777654 233223334456667777776543 11111111 1246777
Q ss_pred cEEEccCCCCCChhhHHhHhhhcCCCCCCccEEecCCCCCCCHHHHHHHHhhCCCCcEEEecC
Q 011445 320 MNLCLRGCKRVTDKGISHLLCVGGTISQSLTTLDLGYMPGISDDGILTIAAAGIGIIDLCVRS 382 (485)
Q Consensus 320 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 382 (485)
+.+.+.++. +...+-..+ ..|.+|+.+.|.. +++..+-..+ ..|++|+.+.+..
T Consensus 289 ~~i~l~~~~-i~~I~~~aF-----~~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~ip~ 342 (379)
T 4h09_A 289 TKVVMDNSA-IETLEPRVF-----MDCVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCTT-CCEECTTTT-----TTCTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCCCT
T ss_pred ccccccccc-cceehhhhh-----cCCCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEECC
Confidence 777776432 222221122 2567777777753 2332222222 3567777777743
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=71.82 E-value=1.4 Score=33.90 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=23.2
Q ss_pred CCcEEeccCCCCCCHHHHHhhcCCCCCCceEEeecceecc
Q 011445 406 QLRRLDLCNCIGLSVDSLRWVKRPSFRGLHWLGIGQTRLA 445 (485)
Q Consensus 406 ~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~~~~~ 445 (485)
+|+.|+|++ ++++......+. .+++|+.|++.+|++.
T Consensus 32 ~l~~L~Ls~-N~l~~l~~~~f~--~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTG-NNLTALPPGLLD--ALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTT-SCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred CCCEEECCC-CcCCccChhhhh--hccccCEEEecCCCee
Confidence 577777776 455554333333 5667777787777754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=67.73 E-value=3.3 Score=31.76 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=13.7
Q ss_pred CccEEEecccCCChHHHHHHHhcCCCCcEEecCCC
Q 011445 99 NLRSLSLVLDVITDELLITITASLPFLVELDLEDR 133 (485)
Q Consensus 99 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 133 (485)
+|++|+|++|.++......+ ..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLL-DALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTG-GGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhh-hhccccCEEEecCC
Confidence 44555555444433221111 22444444444443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.76 E-value=38 Score=24.25 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=17.2
Q ss_pred hhCCCCCCEEEccCCCCCcHHHhhcccCCCCCCEEEcCC
Q 011445 263 LASSRNLEVLDLGGCKSIADTCLRSISCLRKLTALNLTG 301 (485)
Q Consensus 263 l~~l~~L~~L~l~~~~~~~~~~l~~l~~~~~L~~L~l~~ 301 (485)
+..|.+|+.+.|-. .++..+-..+..|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 44455555555543 23322333344555555555544
Done!