Query 011446
Match_columns 485
No_of_seqs 327 out of 2639
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 01:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0326 ATP-dependent RNA heli 100.0 5.2E-77 1.1E-81 530.2 21.8 389 89-477 54-449 (459)
2 KOG0331 ATP-dependent RNA heli 100.0 1.4E-67 3E-72 513.8 32.3 340 119-458 90-442 (519)
3 KOG0330 ATP-dependent RNA heli 100.0 2.7E-67 5.9E-72 480.2 29.7 342 116-457 57-400 (476)
4 COG0513 SrmB Superfamily II DN 100.0 6.2E-63 1.3E-67 502.1 37.8 339 120-458 29-374 (513)
5 PTZ00110 helicase; Provisional 100.0 4.6E-61 1E-65 493.1 42.4 342 116-457 126-477 (545)
6 KOG0328 Predicted ATP-dependen 100.0 3.3E-62 7.1E-67 428.7 28.1 360 118-477 25-393 (400)
7 PRK11776 ATP-dependent RNA hel 100.0 1.2E-60 2.6E-65 485.5 41.6 359 120-478 4-370 (460)
8 KOG0333 U5 snRNP-like RNA heli 100.0 2.4E-61 5.3E-66 456.0 33.2 344 115-458 240-618 (673)
9 PRK10590 ATP-dependent RNA hel 100.0 1.1E-59 2.5E-64 476.1 41.5 360 121-480 2-375 (456)
10 PRK04837 ATP-dependent RNA hel 100.0 8.1E-60 1.8E-64 474.3 40.0 340 118-457 6-355 (423)
11 KOG0338 ATP-dependent RNA heli 100.0 1.1E-61 2.3E-66 456.7 24.4 339 119-457 180-526 (691)
12 KOG0342 ATP-dependent RNA heli 100.0 1.7E-60 3.8E-65 448.2 30.5 352 119-470 81-446 (543)
13 PRK11634 ATP-dependent RNA hel 100.0 6.9E-59 1.5E-63 480.8 42.0 338 120-457 6-345 (629)
14 KOG0345 ATP-dependent RNA heli 100.0 3.7E-59 8E-64 436.3 33.8 338 121-458 5-358 (567)
15 PRK04537 ATP-dependent RNA hel 100.0 2E-58 4.3E-63 475.1 40.7 337 120-456 9-356 (572)
16 KOG0343 RNA Helicase [RNA proc 100.0 1.8E-59 4E-64 445.4 29.8 338 119-457 68-415 (758)
17 PRK11192 ATP-dependent RNA hel 100.0 6.3E-58 1.4E-62 462.7 42.4 360 121-480 2-375 (434)
18 PLN00206 DEAD-box ATP-dependen 100.0 7.2E-58 1.6E-62 468.4 38.6 341 116-457 117-468 (518)
19 KOG0340 ATP-dependent RNA heli 100.0 5.6E-58 1.2E-62 414.3 28.9 354 119-472 6-376 (442)
20 KOG0336 ATP-dependent RNA heli 100.0 1.8E-58 3.9E-63 424.1 26.0 340 118-458 217-566 (629)
21 PRK01297 ATP-dependent RNA hel 100.0 2.6E-56 5.7E-61 454.7 40.1 339 119-457 86-435 (475)
22 KOG0335 ATP-dependent RNA heli 100.0 7E-57 1.5E-61 431.2 25.9 338 121-458 75-438 (482)
23 PTZ00424 helicase 45; Provisio 100.0 6E-55 1.3E-59 437.9 40.0 338 119-456 27-366 (401)
24 KOG0341 DEAD-box protein abstr 100.0 7.5E-58 1.6E-62 417.4 16.1 345 113-458 163-522 (610)
25 KOG0347 RNA helicase [RNA proc 100.0 4.5E-56 9.8E-61 422.3 17.4 343 114-457 175-563 (731)
26 KOG0348 ATP-dependent RNA heli 100.0 1.7E-54 3.8E-59 410.3 27.2 341 117-457 133-547 (708)
27 KOG0339 ATP-dependent RNA heli 100.0 4.7E-54 1E-58 404.7 29.1 345 114-458 217-569 (731)
28 KOG0346 RNA helicase [RNA proc 100.0 3E-54 6.5E-59 400.0 25.4 338 120-457 19-403 (569)
29 KOG0332 ATP-dependent RNA heli 100.0 5.9E-54 1.3E-58 390.5 24.6 343 113-458 83-437 (477)
30 TIGR03817 DECH_helic helicase/ 100.0 8.9E-51 1.9E-55 428.5 37.0 323 127-457 21-379 (742)
31 KOG4284 DEAD box protein [Tran 100.0 4.4E-52 9.6E-57 401.2 23.0 361 111-472 16-395 (980)
32 PLN03137 ATP-dependent DNA hel 100.0 2.2E-50 4.7E-55 422.6 35.8 326 120-457 435-780 (1195)
33 KOG0327 Translation initiation 100.0 2.6E-51 5.6E-56 376.6 24.2 336 121-458 27-364 (397)
34 KOG0334 RNA helicase [RNA proc 100.0 2.6E-50 5.5E-55 411.9 26.9 343 116-458 361-714 (997)
35 TIGR00614 recQ_fam ATP-depende 100.0 5E-49 1.1E-53 399.7 33.7 307 138-457 7-326 (470)
36 KOG0337 ATP-dependent RNA heli 100.0 1.6E-50 3.4E-55 373.5 18.3 340 119-458 20-362 (529)
37 KOG0350 DEAD-box ATP-dependent 100.0 2.4E-49 5.2E-54 372.9 25.2 339 120-458 127-534 (620)
38 PRK11057 ATP-dependent DNA hel 100.0 6.8E-48 1.5E-52 401.2 35.6 312 132-455 14-334 (607)
39 TIGR01389 recQ ATP-dependent D 100.0 4.4E-47 9.6E-52 396.4 34.5 306 138-455 9-322 (591)
40 COG0514 RecQ Superfamily II DN 100.0 1.5E-46 3.4E-51 373.3 27.5 308 139-457 14-330 (590)
41 PRK02362 ski2-like helicase; P 100.0 6.4E-46 1.4E-50 395.9 31.9 322 121-453 2-384 (737)
42 PRK13767 ATP-dependent helicas 100.0 1.5E-45 3.2E-50 396.5 33.7 321 127-451 18-384 (876)
43 PRK00254 ski2-like helicase; P 100.0 3.6E-44 7.8E-49 381.6 32.6 322 121-452 2-374 (720)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.7E-43 3.8E-48 365.9 34.7 306 138-454 12-380 (844)
45 KOG0329 ATP-dependent RNA heli 100.0 3.7E-45 8E-50 316.9 16.0 309 115-458 37-349 (387)
46 COG1201 Lhr Lhr-like helicases 100.0 3.5E-43 7.6E-48 361.6 31.6 319 127-451 8-348 (814)
47 KOG0344 ATP-dependent RNA heli 100.0 4.4E-44 9.6E-49 345.2 22.6 333 125-457 141-488 (593)
48 PRK01172 ski2-like helicase; P 100.0 5.1E-43 1.1E-47 371.3 31.0 320 121-452 2-364 (674)
49 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.4E-42 3E-47 365.9 33.5 317 146-478 6-354 (819)
50 TIGR00580 mfd transcription-re 100.0 5.4E-42 1.2E-46 365.0 35.4 314 127-457 436-763 (926)
51 PRK11664 ATP-dependent RNA hel 100.0 5.4E-42 1.2E-46 362.4 30.7 315 146-476 9-355 (812)
52 PRK10689 transcription-repair 100.0 3.3E-41 7.2E-46 366.4 36.3 312 128-457 586-912 (1147)
53 PHA02653 RNA helicase NPH-II; 100.0 3.1E-41 6.7E-46 347.7 30.5 295 145-453 167-504 (675)
54 PRK09751 putative ATP-dependen 100.0 3.9E-41 8.5E-46 367.4 30.1 287 162-451 1-371 (1490)
55 PRK10917 ATP-dependent DNA hel 100.0 4.6E-40 1E-44 346.0 34.9 310 129-456 248-581 (681)
56 TIGR00643 recG ATP-dependent D 100.0 2.8E-39 6E-44 338.1 34.7 308 132-456 226-558 (630)
57 KOG0353 ATP-dependent DNA heli 100.0 2.3E-40 5E-45 302.4 22.1 294 139-443 91-403 (695)
58 KOG0351 ATP-dependent DNA heli 100.0 3.1E-40 6.7E-45 346.7 24.9 317 131-457 252-585 (941)
59 PRK09401 reverse gyrase; Revie 100.0 1.5E-38 3.3E-43 346.3 33.0 296 139-451 78-431 (1176)
60 PRK14701 reverse gyrase; Provi 100.0 7.2E-38 1.6E-42 347.8 35.3 312 131-457 68-449 (1638)
61 KOG0352 ATP-dependent DNA heli 100.0 2.6E-39 5.6E-44 299.5 18.8 311 131-456 7-354 (641)
62 PRK11131 ATP-dependent RNA hel 100.0 1E-38 2.2E-43 342.6 26.3 315 146-477 78-428 (1294)
63 TIGR01587 cas3_core CRISPR-ass 100.0 2.3E-38 5E-43 312.7 25.6 290 159-456 1-324 (358)
64 COG1111 MPH1 ERCC4-like helica 100.0 8E-38 1.7E-42 297.6 25.9 312 140-455 13-475 (542)
65 PRK12898 secA preprotein trans 100.0 9.4E-37 2E-41 309.5 33.9 307 142-458 103-580 (656)
66 PHA02558 uvsW UvsW helicase; P 100.0 2.3E-37 4.9E-42 315.9 28.2 296 141-453 113-441 (501)
67 COG1205 Distinct helicase fami 100.0 2.8E-37 6.1E-42 327.0 28.9 326 128-455 56-413 (851)
68 COG1202 Superfamily II helicas 100.0 1.5E-37 3.3E-42 297.7 23.7 326 119-451 193-538 (830)
69 KOG0922 DEAH-box RNA helicase 100.0 5.3E-38 1.2E-42 308.1 20.0 302 144-459 53-386 (674)
70 KOG0923 mRNA splicing factor A 100.0 4.6E-38 9.9E-43 305.3 19.2 319 139-469 262-612 (902)
71 COG1204 Superfamily II helicas 100.0 3.6E-37 7.7E-42 321.7 24.9 318 127-451 16-393 (766)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 4.5E-36 9.7E-41 293.3 30.5 288 146-449 1-357 (357)
73 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.8E-37 8.2E-42 331.9 24.9 292 148-458 73-399 (1283)
74 KOG0349 Putative DEAD-box RNA 100.0 9.1E-38 2E-42 289.7 17.1 271 187-457 285-608 (725)
75 PRK09200 preprotein translocas 100.0 1E-35 2.2E-40 308.4 30.1 308 139-458 76-535 (790)
76 COG1643 HrpA HrpA-like helicas 100.0 1.1E-36 2.4E-41 316.1 19.6 320 145-477 53-404 (845)
77 TIGR03714 secA2 accessory Sec 100.0 3.4E-35 7.5E-40 301.5 29.1 308 143-457 69-530 (762)
78 TIGR01054 rgy reverse gyrase. 100.0 5.9E-35 1.3E-39 318.8 32.7 290 131-436 67-409 (1171)
79 TIGR00963 secA preprotein tran 100.0 7.6E-35 1.7E-39 297.0 29.5 307 142-458 56-511 (745)
80 PRK13766 Hef nuclease; Provisi 100.0 2E-34 4.3E-39 311.4 33.8 310 140-453 13-469 (773)
81 KOG0924 mRNA splicing factor A 100.0 1.1E-35 2.4E-40 289.3 17.8 308 140-461 354-695 (1042)
82 KOG0920 ATP-dependent RNA heli 100.0 2E-34 4.2E-39 298.0 23.4 331 142-481 173-566 (924)
83 KOG0354 DEAD-box like helicase 100.0 1.6E-33 3.5E-38 283.5 24.0 307 140-451 60-517 (746)
84 TIGR00603 rad25 DNA repair hel 100.0 6.9E-33 1.5E-37 284.6 26.6 292 142-455 255-591 (732)
85 KOG0952 DNA/RNA helicase MER3/ 100.0 1.8E-32 3.9E-37 279.0 24.3 307 138-450 106-475 (1230)
86 PRK09694 helicase Cas3; Provis 100.0 1E-30 2.2E-35 276.0 30.4 310 140-454 284-665 (878)
87 cd00268 DEADc DEAD-box helicas 100.0 6.2E-31 1.3E-35 238.7 24.2 200 122-321 1-202 (203)
88 PRK04914 ATP-dependent helicas 100.0 1.9E-30 4.2E-35 275.6 29.3 311 142-457 152-596 (956)
89 PRK05580 primosome assembly pr 100.0 2.1E-29 4.6E-34 264.3 34.9 296 142-453 144-538 (679)
90 KOG0947 Cytoplasmic exosomal R 100.0 7E-31 1.5E-35 264.6 22.2 295 142-452 297-709 (1248)
91 KOG0926 DEAH-box RNA helicase 100.0 1.9E-31 4.2E-36 264.0 17.4 300 148-458 262-699 (1172)
92 COG1061 SSL2 DNA or RNA helica 100.0 7.6E-30 1.7E-34 255.5 25.7 292 141-451 35-376 (442)
93 KOG0948 Nuclear exosomal RNA h 100.0 3.4E-31 7.3E-36 260.8 14.7 296 142-453 129-526 (1041)
94 PRK13104 secA preprotein trans 100.0 7.4E-29 1.6E-33 256.7 27.3 307 142-458 82-581 (896)
95 COG4581 Superfamily II RNA hel 100.0 4E-29 8.6E-34 261.5 25.2 304 137-452 115-523 (1041)
96 COG1197 Mfd Transcription-repa 100.0 1.8E-28 3.9E-33 256.6 29.8 315 126-458 578-907 (1139)
97 KOG0925 mRNA splicing factor A 100.0 4.4E-30 9.5E-35 242.0 15.1 328 119-464 24-390 (699)
98 KOG0951 RNA helicase BRR2, DEA 100.0 4E-29 8.7E-34 257.7 23.4 308 139-451 306-687 (1674)
99 COG1200 RecG RecG-like helicas 100.0 5.7E-28 1.2E-32 240.2 30.3 311 126-453 246-580 (677)
100 COG4098 comFA Superfamily II D 100.0 1.1E-27 2.5E-32 217.1 27.4 310 142-474 97-429 (441)
101 PRK12904 preprotein translocas 100.0 8.6E-28 1.9E-32 248.7 29.0 307 142-458 81-567 (830)
102 TIGR00595 priA primosomal prot 100.0 9.4E-28 2E-32 243.2 28.3 276 161-453 1-370 (505)
103 PRK12899 secA preprotein trans 100.0 9.1E-28 2E-32 248.1 28.4 148 123-275 65-228 (970)
104 PRK12906 secA preprotein trans 100.0 4E-28 8.7E-33 250.1 24.9 307 142-458 80-547 (796)
105 PRK11448 hsdR type I restricti 100.0 7E-27 1.5E-31 254.0 28.7 303 142-451 413-800 (1123)
106 PLN03142 Probable chromatin-re 99.9 4E-26 8.6E-31 243.6 27.1 307 142-457 169-590 (1033)
107 PF00270 DEAD: DEAD/DEAH box h 99.9 1.8E-26 3.9E-31 203.1 17.3 165 144-309 1-168 (169)
108 KOG0950 DNA polymerase theta/e 99.9 3.7E-26 8.1E-31 232.2 20.1 314 126-452 207-597 (1008)
109 PRK13107 preprotein translocas 99.9 1.1E-25 2.4E-30 232.5 23.8 307 142-458 82-585 (908)
110 COG1203 CRISPR-associated heli 99.9 2.3E-24 5.1E-29 228.5 23.3 309 143-454 196-538 (733)
111 KOG0385 Chromatin remodeling c 99.9 1.4E-23 3E-28 208.2 21.1 305 142-457 167-590 (971)
112 KOG0384 Chromodomain-helicase 99.9 4.8E-24 1E-28 221.0 8.2 324 141-474 369-819 (1373)
113 COG1110 Reverse gyrase [DNA re 99.9 1E-20 2.2E-25 193.9 28.0 280 139-436 80-417 (1187)
114 PRK12326 preprotein translocas 99.9 1E-20 2.2E-25 191.6 26.9 306 142-458 78-541 (764)
115 PRK12900 secA preprotein trans 99.9 2E-21 4.3E-26 201.9 22.3 117 340-458 579-705 (1025)
116 TIGR01407 dinG_rel DnaQ family 99.9 2.5E-20 5.3E-25 202.0 30.4 301 127-435 231-755 (850)
117 TIGR00348 hsdR type I site-spe 99.9 2.9E-20 6.3E-25 195.4 27.6 297 143-451 239-634 (667)
118 KOG0387 Transcription-coupled 99.9 1.5E-20 3.1E-25 187.8 22.0 308 142-458 205-650 (923)
119 COG4096 HsdR Type I site-speci 99.9 5.3E-21 1.2E-25 193.1 18.9 296 142-455 165-530 (875)
120 COG1198 PriA Primosomal protei 99.9 1.3E-19 2.8E-24 186.7 26.9 298 142-454 198-593 (730)
121 smart00487 DEXDc DEAD-like hel 99.9 4.9E-20 1.1E-24 166.1 20.9 185 138-323 4-190 (201)
122 TIGR00631 uvrb excinuclease AB 99.9 1.1E-19 2.4E-24 188.9 25.7 96 356-451 441-541 (655)
123 KOG0949 Predicted helicase, DE 99.9 7.8E-21 1.7E-25 192.9 15.4 156 143-303 512-671 (1330)
124 PRK13103 secA preprotein trans 99.8 1.2E-19 2.7E-24 188.1 22.9 306 142-458 82-585 (913)
125 KOG1123 RNA polymerase II tran 99.8 1.6E-20 3.4E-25 178.4 13.7 291 141-452 301-635 (776)
126 COG0556 UvrB Helicase subunit 99.8 5.3E-19 1.1E-23 169.9 21.9 128 345-472 433-568 (663)
127 PRK12903 secA preprotein trans 99.8 2E-18 4.4E-23 177.3 25.4 306 142-458 78-533 (925)
128 KOG0390 DNA repair protein, SN 99.8 1.4E-18 3.1E-23 177.9 23.8 316 142-464 238-705 (776)
129 KOG4150 Predicted ATP-dependen 99.8 5E-19 1.1E-23 170.5 14.0 318 137-457 281-633 (1034)
130 PRK07246 bifunctional ATP-depe 99.8 3.3E-17 7E-22 175.4 28.6 286 138-435 242-724 (820)
131 PRK05298 excinuclease ABC subu 99.8 1.7E-17 3.8E-22 173.9 25.0 96 356-451 445-545 (652)
132 KOG0389 SNF2 family DNA-depend 99.8 2E-18 4.2E-23 172.6 15.5 309 143-458 400-880 (941)
133 KOG1000 Chromatin remodeling p 99.8 2.5E-18 5.4E-23 163.4 15.0 306 140-459 196-596 (689)
134 CHL00122 secA preprotein trans 99.8 6.3E-17 1.4E-21 167.4 25.0 273 142-424 76-491 (870)
135 KOG0392 SNF2 family DNA-depend 99.8 3.2E-17 6.9E-22 170.4 22.7 313 143-463 976-1451(1549)
136 KOG0953 Mitochondrial RNA heli 99.8 9.9E-18 2.1E-22 161.6 16.5 279 158-476 192-492 (700)
137 KOG0921 Dosage compensation co 99.8 3E-18 6.4E-23 172.8 13.3 298 146-451 382-762 (1282)
138 PF00271 Helicase_C: Helicase 99.8 2.2E-18 4.8E-23 130.3 8.7 78 375-452 1-78 (78)
139 cd00079 HELICc Helicase superf 99.8 1.7E-17 3.8E-22 139.0 13.9 113 343-455 12-126 (131)
140 cd00046 DEXDc DEAD-like helica 99.7 6.4E-17 1.4E-21 137.2 16.4 144 158-303 1-144 (144)
141 COG4889 Predicted helicase [Ge 99.7 7E-18 1.5E-22 169.8 11.6 324 121-451 141-572 (1518)
142 KOG0951 RNA helicase BRR2, DEA 99.7 1.9E-16 4.1E-21 165.1 20.0 299 142-458 1143-1491(1674)
143 TIGR03117 cas_csf4 CRISPR-asso 99.7 5.7E-15 1.2E-19 151.5 28.8 78 356-435 469-560 (636)
144 TIGR02562 cas3_yersinia CRISPR 99.7 3.3E-15 7.2E-20 156.7 23.8 319 132-455 398-883 (1110)
145 PRK08074 bifunctional ATP-depe 99.7 1.3E-14 2.9E-19 158.2 29.2 80 356-435 751-834 (928)
146 PRK12902 secA preprotein trans 99.7 4.2E-15 9.1E-20 153.8 23.6 273 142-424 85-506 (939)
147 PF04851 ResIII: Type III rest 99.7 2.1E-15 4.5E-20 134.3 14.9 152 142-304 3-183 (184)
148 KOG0386 Chromatin remodeling c 99.6 1.3E-15 2.9E-20 156.1 13.9 303 142-458 394-830 (1157)
149 smart00490 HELICc helicase sup 99.6 1.2E-15 2.6E-20 116.5 9.0 81 372-452 2-82 (82)
150 PRK12901 secA preprotein trans 99.6 5.3E-14 1.2E-18 147.1 20.7 113 342-457 611-734 (1112)
151 KOG0391 SNF2 family DNA-depend 99.6 2.4E-14 5.2E-19 148.1 17.5 122 343-464 1260-1385(1958)
152 KOG1002 Nucleotide excision re 99.6 2E-13 4.4E-18 130.2 19.2 101 358-458 639-741 (791)
153 KOG0388 SNF2 family DNA-depend 99.5 1.1E-13 2.4E-18 137.1 15.8 117 342-458 1027-1146(1185)
154 PF02399 Herpes_ori_bp: Origin 99.5 3.6E-13 7.8E-18 138.3 20.0 275 158-450 50-375 (824)
155 PRK11747 dinG ATP-dependent DN 99.5 4E-12 8.6E-17 134.7 28.1 76 356-435 533-615 (697)
156 COG1199 DinG Rad3-related DNA 99.5 2.2E-12 4.8E-17 137.5 25.6 100 348-451 471-604 (654)
157 TIGR00604 rad3 DNA repair heli 99.5 8.7E-12 1.9E-16 133.1 28.3 72 140-211 8-83 (705)
158 PRK14873 primosome assembly pr 99.5 6.1E-12 1.3E-16 131.0 25.3 134 163-308 166-308 (665)
159 KOG4439 RNA polymerase II tran 99.4 3.5E-12 7.5E-17 126.8 16.5 101 357-457 746-849 (901)
160 COG0553 HepA Superfamily II DN 99.4 6.1E-12 1.3E-16 139.3 19.0 116 343-458 692-814 (866)
161 KOG1015 Transcription regulato 99.4 1.2E-11 2.5E-16 126.4 18.6 119 346-464 1129-1275(1567)
162 COG0653 SecA Preprotein transl 99.4 3.3E-11 7.1E-16 124.8 20.4 317 143-470 79-549 (822)
163 PF06862 DUF1253: Protein of u 99.4 2.3E-10 5E-15 112.1 24.0 213 238-450 131-395 (442)
164 PF07652 Flavi_DEAD: Flaviviru 99.3 6E-12 1.3E-16 102.9 7.8 136 157-308 4-141 (148)
165 PF00176 SNF2_N: SNF2 family N 99.3 1.5E-11 3.2E-16 118.5 10.5 151 146-303 1-172 (299)
166 COG0610 Type I site-specific r 99.2 1.8E-09 3.9E-14 117.7 22.3 283 158-451 274-636 (962)
167 KOG2340 Uncharacterized conser 99.1 1.6E-09 3.4E-14 105.0 15.2 314 139-453 213-653 (698)
168 smart00488 DEXDc2 DEAD-like he 99.1 1.7E-09 3.6E-14 102.7 13.0 70 142-211 8-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.1 1.7E-09 3.6E-14 102.7 13.0 70 142-211 8-84 (289)
170 PF07517 SecA_DEAD: SecA DEAD- 98.9 1.7E-08 3.6E-13 93.3 12.9 127 142-275 77-210 (266)
171 KOG0952 DNA/RNA helicase MER3/ 98.9 3.4E-10 7.3E-15 117.7 0.7 259 142-409 927-1207(1230)
172 KOG1016 Predicted DNA helicase 98.9 1.7E-07 3.6E-12 94.8 19.4 101 358-458 720-841 (1387)
173 PRK15483 type III restriction- 98.7 2.6E-07 5.5E-12 98.6 14.0 142 159-305 61-240 (986)
174 COG3587 Restriction endonuclea 98.7 8.4E-07 1.8E-11 91.3 16.3 45 406-450 482-526 (985)
175 TIGR00596 rad1 DNA repair prot 98.6 2.7E-07 5.9E-12 98.2 11.5 68 236-303 5-72 (814)
176 PF13086 AAA_11: AAA domain; P 98.6 2E-07 4.3E-12 86.2 8.7 68 142-210 1-75 (236)
177 PF13604 AAA_30: AAA domain; P 98.6 4.5E-07 9.7E-12 81.1 10.5 123 142-302 1-130 (196)
178 PF02562 PhoH: PhoH-like prote 98.5 1E-07 2.2E-12 84.6 5.5 146 141-302 3-155 (205)
179 PF13872 AAA_34: P-loop contai 98.4 4.5E-06 9.8E-11 77.5 12.3 159 142-308 37-225 (303)
180 PRK10536 hypothetical protein; 98.4 8.1E-06 1.8E-10 74.6 12.9 144 139-301 56-211 (262)
181 KOG1001 Helicase-like transcri 98.3 1.4E-06 3.1E-11 90.8 8.3 100 359-458 541-642 (674)
182 TIGR01447 recD exodeoxyribonuc 98.2 1.4E-05 3E-10 83.1 13.2 140 144-302 147-295 (586)
183 PRK10875 recD exonuclease V su 98.2 2.7E-05 6E-10 81.1 14.2 140 144-302 154-301 (615)
184 TIGR01448 recD_rel helicase, p 98.2 3E-05 6.5E-10 82.9 14.4 126 141-302 322-452 (720)
185 KOG1803 DNA helicase [Replicat 98.2 5.3E-06 1.2E-10 82.7 7.8 63 142-207 185-248 (649)
186 PF09848 DUF2075: Uncharacteri 98.2 9.2E-06 2E-10 79.9 9.6 108 159-289 3-117 (352)
187 KOG1802 RNA helicase nonsense 98.1 1.6E-05 3.5E-10 79.8 9.1 83 134-222 402-484 (935)
188 PF13307 Helicase_C_2: Helicas 98.1 5.7E-06 1.2E-10 72.0 5.1 84 350-436 3-92 (167)
189 PF12340 DUF3638: Protein of u 98.0 0.00011 2.4E-09 65.9 13.2 144 128-276 11-186 (229)
190 PF13245 AAA_19: Part of AAA d 98.0 2.6E-05 5.6E-10 57.7 7.0 59 150-208 2-62 (76)
191 KOG0383 Predicted helicase [Ge 98.0 8.8E-07 1.9E-11 91.3 -2.0 77 343-420 615-696 (696)
192 TIGR00376 DNA helicase, putati 97.9 0.0001 2.3E-09 77.6 12.4 67 141-210 156-223 (637)
193 COG1875 NYN ribonuclease and A 97.9 4.2E-05 9.2E-10 72.1 8.1 147 138-301 224-386 (436)
194 PRK12723 flagellar biosynthesi 97.8 0.00016 3.5E-09 71.1 11.5 129 158-314 175-309 (388)
195 PRK13889 conjugal transfer rel 97.7 0.00062 1.3E-08 74.5 14.6 123 142-302 346-470 (988)
196 TIGR02768 TraA_Ti Ti-type conj 97.7 0.0008 1.7E-08 72.5 15.1 121 142-300 352-474 (744)
197 KOG1132 Helicase of the DEAD s 97.7 0.00021 4.6E-09 74.5 10.0 78 358-436 562-656 (945)
198 PF00448 SRP54: SRP54-type pro 97.7 0.00035 7.7E-09 62.3 10.3 131 159-314 3-136 (196)
199 PF13401 AAA_22: AAA domain; P 97.6 0.00017 3.7E-09 59.9 6.6 22 157-178 4-25 (131)
200 PRK04296 thymidine kinase; Pro 97.6 0.00022 4.7E-09 63.5 7.1 35 159-196 4-38 (190)
201 cd00009 AAA The AAA+ (ATPases 97.5 0.00092 2E-08 56.3 10.0 19 157-175 19-37 (151)
202 PF00580 UvrD-helicase: UvrD/R 97.5 0.00027 5.9E-09 68.3 7.6 122 143-272 1-125 (315)
203 PRK13826 Dtr system oriT relax 97.5 0.0019 4.2E-08 71.2 14.7 137 127-302 367-505 (1102)
204 KOG1805 DNA replication helica 97.4 0.0012 2.6E-08 69.8 11.4 126 140-276 667-810 (1100)
205 PRK14722 flhF flagellar biosyn 97.4 0.0016 3.6E-08 63.5 11.5 130 157-315 137-270 (374)
206 PRK05703 flhF flagellar biosyn 97.4 0.0036 7.7E-08 62.8 14.0 128 157-314 221-354 (424)
207 PRK14974 cell division protein 97.4 0.0014 3.1E-08 63.2 10.4 132 159-315 142-276 (336)
208 COG1419 FlhF Flagellar GTP-bin 97.3 0.0031 6.8E-08 61.3 12.4 133 157-317 203-338 (407)
209 PRK11889 flhF flagellar biosyn 97.3 0.0034 7.3E-08 61.2 12.4 130 158-315 242-375 (436)
210 PRK06526 transposase; Provisio 97.3 0.0017 3.8E-08 60.3 10.0 29 153-181 94-122 (254)
211 smart00382 AAA ATPases associa 97.3 0.00065 1.4E-08 56.7 6.2 41 157-200 2-42 (148)
212 PRK08181 transposase; Validate 97.2 0.0079 1.7E-07 56.3 13.4 107 154-304 103-210 (269)
213 TIGR02760 TraI_TIGR conjugativ 97.2 0.026 5.7E-07 67.0 20.2 236 142-407 429-686 (1960)
214 KOG1131 RNA polymerase II tran 97.2 0.0019 4.1E-08 63.7 8.9 71 140-210 14-89 (755)
215 PF05970 PIF1: PIF1-like helic 97.2 0.0014 3E-08 64.8 8.2 60 142-204 1-66 (364)
216 PRK12727 flagellar biosynthesi 97.2 0.015 3.3E-07 59.0 15.4 129 156-314 349-481 (559)
217 PRK07764 DNA polymerase III su 97.1 0.0047 1E-07 66.8 11.9 40 260-300 118-157 (824)
218 PF05127 Helicase_RecD: Helica 97.1 0.0006 1.3E-08 59.1 4.1 123 161-303 1-123 (177)
219 PRK14956 DNA polymerase III su 97.1 0.0028 6E-08 63.7 9.1 19 160-178 43-61 (484)
220 PF14617 CMS1: U3-containing 9 97.0 0.0015 3.3E-08 59.9 6.5 87 186-273 124-212 (252)
221 PRK07003 DNA polymerase III su 97.0 0.0063 1.4E-07 64.1 11.3 39 261-300 118-156 (830)
222 KOG0989 Replication factor C, 97.0 0.0013 2.7E-08 61.0 5.5 45 258-303 125-169 (346)
223 PRK12323 DNA polymerase III su 97.0 0.008 1.7E-07 62.4 11.6 42 260-302 122-163 (700)
224 PRK00771 signal recognition pa 96.9 0.012 2.7E-07 59.0 12.5 131 158-315 96-229 (437)
225 PRK08116 hypothetical protein; 96.8 0.044 9.5E-07 51.6 14.6 49 260-308 176-226 (268)
226 PRK14087 dnaA chromosomal repl 96.8 0.0084 1.8E-07 60.8 10.2 42 158-201 142-183 (450)
227 PRK05642 DNA replication initi 96.8 0.0038 8.2E-08 57.5 7.1 46 260-305 95-141 (234)
228 PF13871 Helicase_C_4: Helicas 96.8 0.0025 5.3E-08 59.3 5.7 60 398-457 52-119 (278)
229 smart00492 HELICc3 helicase su 96.8 0.008 1.7E-07 50.4 8.3 67 370-436 4-79 (141)
230 PRK14960 DNA polymerase III su 96.8 0.012 2.6E-07 61.2 11.1 39 261-300 117-155 (702)
231 PRK06893 DNA replication initi 96.8 0.0035 7.7E-08 57.6 6.6 47 260-306 89-137 (229)
232 KOG0701 dsRNA-specific nucleas 96.7 0.0019 4.1E-08 72.9 5.5 94 359-452 294-399 (1606)
233 PRK12726 flagellar biosynthesi 96.7 0.017 3.7E-07 56.2 11.1 129 157-313 206-338 (407)
234 PRK11331 5-methylcytosine-spec 96.7 0.01 2.2E-07 59.0 9.8 32 144-175 181-212 (459)
235 PRK14949 DNA polymerase III su 96.7 0.013 2.9E-07 62.9 11.2 19 160-178 41-59 (944)
236 PRK14723 flhF flagellar biosyn 96.7 0.028 6.1E-07 59.8 13.5 129 157-314 185-317 (767)
237 COG1444 Predicted P-loop ATPas 96.7 0.023 5E-07 59.9 12.7 140 142-303 214-356 (758)
238 PRK14951 DNA polymerase III su 96.7 0.013 2.7E-07 61.4 10.7 19 160-178 41-59 (618)
239 PRK07994 DNA polymerase III su 96.7 0.013 2.9E-07 61.4 10.9 38 261-299 118-155 (647)
240 PRK14964 DNA polymerase III su 96.7 0.021 4.6E-07 58.0 12.1 116 159-300 37-153 (491)
241 KOG0298 DEAD box-containing he 96.7 0.0061 1.3E-07 66.4 8.4 145 156-305 373-552 (1394)
242 COG3421 Uncharacterized protei 96.7 0.018 3.9E-07 58.1 10.9 151 162-315 2-176 (812)
243 PRK14958 DNA polymerase III su 96.6 0.017 3.7E-07 59.4 11.3 39 261-300 118-156 (509)
244 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.008 1.7E-07 55.1 8.2 20 157-176 38-57 (226)
245 PRK08727 hypothetical protein; 96.6 0.0049 1.1E-07 56.8 6.7 47 260-306 91-139 (233)
246 PRK12377 putative replication 96.6 0.023 5E-07 52.6 10.9 42 158-203 102-143 (248)
247 cd01120 RecA-like_NTPases RecA 96.6 0.026 5.6E-07 48.4 10.8 36 160-198 2-37 (165)
248 PRK07952 DNA replication prote 96.6 0.048 1E-06 50.3 12.9 45 260-304 160-206 (244)
249 PRK14712 conjugal transfer nic 96.6 0.023 4.9E-07 65.2 12.7 61 142-203 835-899 (1623)
250 smart00491 HELICc2 helicase su 96.6 0.0079 1.7E-07 50.6 7.0 68 369-436 3-80 (142)
251 PRK00149 dnaA chromosomal repl 96.6 0.0089 1.9E-07 61.0 8.7 37 158-195 149-185 (450)
252 PRK08084 DNA replication initi 96.6 0.0065 1.4E-07 56.1 7.0 18 158-175 46-63 (235)
253 PHA02533 17 large terminase pr 96.6 0.024 5.2E-07 58.5 11.8 148 142-303 59-210 (534)
254 PHA02544 44 clamp loader, smal 96.5 0.03 6.4E-07 54.3 11.8 40 262-301 100-139 (316)
255 COG2805 PilT Tfp pilus assembl 96.5 0.005 1.1E-07 57.0 5.8 58 116-194 102-160 (353)
256 PRK13709 conjugal transfer nic 96.5 0.029 6.4E-07 65.1 13.2 61 141-202 966-1030(1747)
257 PRK14952 DNA polymerase III su 96.5 0.015 3.2E-07 60.6 9.5 40 260-300 116-155 (584)
258 TIGR01547 phage_term_2 phage t 96.4 0.015 3.3E-07 58.2 9.5 145 159-315 3-152 (396)
259 TIGR01425 SRP54_euk signal rec 96.4 0.036 7.8E-07 55.2 11.8 131 159-314 102-235 (429)
260 PRK06921 hypothetical protein; 96.4 0.031 6.7E-07 52.5 10.8 37 157-195 117-153 (266)
261 PF03354 Terminase_1: Phage Te 96.4 0.012 2.7E-07 60.3 8.9 150 145-302 1-163 (477)
262 cd01124 KaiC KaiC is a circadi 96.4 0.021 4.5E-07 50.6 9.3 48 160-211 2-49 (187)
263 PRK00411 cdc6 cell division co 96.4 0.015 3.2E-07 58.3 9.2 36 158-194 56-91 (394)
264 PRK09111 DNA polymerase III su 96.4 0.047 1E-06 57.2 13.1 119 159-300 48-169 (598)
265 PRK08691 DNA polymerase III su 96.4 0.018 4E-07 60.3 9.8 40 260-300 117-156 (709)
266 PRK05707 DNA polymerase III su 96.4 0.014 2.9E-07 56.6 8.3 39 142-180 3-45 (328)
267 PRK14965 DNA polymerase III su 96.4 0.035 7.6E-07 58.2 11.9 40 260-300 117-156 (576)
268 PRK06731 flhF flagellar biosyn 96.4 0.059 1.3E-06 50.5 12.1 130 157-315 75-209 (270)
269 PF00308 Bac_DnaA: Bacterial d 96.4 0.015 3.3E-07 52.9 8.1 107 159-307 36-144 (219)
270 TIGR02881 spore_V_K stage V sp 96.4 0.011 2.3E-07 55.7 7.2 19 158-176 43-61 (261)
271 PF13177 DNA_pol3_delta2: DNA 96.4 0.014 3.1E-07 50.4 7.4 42 261-303 101-142 (162)
272 PRK06835 DNA replication prote 96.3 0.066 1.4E-06 51.8 12.6 41 157-201 183-223 (329)
273 PRK06645 DNA polymerase III su 96.3 0.02 4.3E-07 58.6 9.5 21 159-179 45-65 (507)
274 TIGR00362 DnaA chromosomal rep 96.3 0.016 3.5E-07 58.2 8.7 37 158-195 137-173 (405)
275 PTZ00293 thymidine kinase; Pro 96.3 0.017 3.7E-07 51.6 7.7 39 157-198 4-42 (211)
276 PRK14721 flhF flagellar biosyn 96.3 0.028 6E-07 56.0 10.0 132 156-314 190-323 (420)
277 TIGR00064 ftsY signal recognit 96.3 0.061 1.3E-06 50.7 11.8 133 158-315 73-214 (272)
278 PRK06995 flhF flagellar biosyn 96.3 0.033 7.2E-07 56.4 10.6 23 157-179 256-278 (484)
279 PRK10919 ATP-dependent DNA hel 96.3 0.0091 2E-07 63.9 6.9 69 142-212 2-71 (672)
280 COG2256 MGS1 ATPase related to 96.2 0.011 2.3E-07 57.2 6.4 18 158-175 49-66 (436)
281 PRK11054 helD DNA helicase IV; 96.2 0.021 4.5E-07 60.9 9.2 71 141-213 195-266 (684)
282 PRK14961 DNA polymerase III su 96.2 0.049 1.1E-06 53.8 11.3 18 160-177 41-58 (363)
283 PRK08903 DnaA regulatory inact 96.2 0.025 5.3E-07 51.9 8.5 42 262-304 90-132 (227)
284 PRK14959 DNA polymerase III su 96.2 0.03 6.4E-07 58.4 9.8 21 159-179 40-60 (624)
285 PF13173 AAA_14: AAA domain 96.2 0.042 9E-07 45.3 9.1 38 262-302 61-98 (128)
286 COG2909 MalT ATP-dependent tra 96.1 0.013 2.7E-07 61.8 6.9 42 263-304 130-171 (894)
287 PLN03025 replication factor C 96.1 0.057 1.2E-06 52.3 11.3 39 262-302 99-137 (319)
288 PRK14969 DNA polymerase III su 96.1 0.053 1.1E-06 56.2 11.5 40 260-300 117-156 (527)
289 PRK10867 signal recognition pa 96.1 0.077 1.7E-06 53.2 12.0 57 159-220 102-160 (433)
290 PRK05563 DNA polymerase III su 96.0 0.034 7.3E-07 58.1 9.5 19 160-178 41-59 (559)
291 PRK12402 replication factor C 96.0 0.047 1E-06 53.4 10.1 41 260-301 123-163 (337)
292 PRK12724 flagellar biosynthesi 96.0 0.084 1.8E-06 52.3 11.5 125 159-314 225-356 (432)
293 PTZ00112 origin recognition co 96.0 0.066 1.4E-06 57.3 11.3 22 160-182 784-805 (1164)
294 KOG2028 ATPase related to the 96.0 0.038 8.2E-07 52.6 8.5 17 159-175 164-180 (554)
295 TIGR03499 FlhF flagellar biosy 95.9 0.057 1.2E-06 51.3 10.0 23 157-179 194-216 (282)
296 PRK14962 DNA polymerase III su 95.9 0.036 7.8E-07 56.4 9.1 18 160-177 39-56 (472)
297 PRK07471 DNA polymerase III su 95.9 0.056 1.2E-06 53.2 10.2 42 260-302 139-180 (365)
298 cd03115 SRP The signal recogni 95.9 0.26 5.6E-06 43.0 13.5 129 160-314 3-135 (173)
299 PHA03333 putative ATPase subun 95.9 0.1 2.2E-06 54.4 12.1 147 144-303 171-332 (752)
300 PF05876 Terminase_GpA: Phage 95.9 0.018 3.9E-07 60.0 6.9 124 142-275 16-147 (557)
301 PRK14088 dnaA chromosomal repl 95.9 0.069 1.5E-06 54.1 10.9 38 158-196 131-168 (440)
302 PRK08769 DNA polymerase III su 95.9 0.037 8.1E-07 53.2 8.4 39 141-179 3-48 (319)
303 PRK13833 conjugal transfer pro 95.8 0.032 6.9E-07 53.7 7.8 63 135-200 123-186 (323)
304 PRK14086 dnaA chromosomal repl 95.8 0.023 5.1E-07 58.9 7.3 48 260-307 375-424 (617)
305 PRK14955 DNA polymerase III su 95.8 0.094 2E-06 52.5 11.5 19 160-178 41-59 (397)
306 PRK04195 replication factor C 95.8 0.11 2.4E-06 53.4 12.2 19 157-175 39-57 (482)
307 TIGR02785 addA_Gpos recombinat 95.8 0.035 7.7E-07 63.6 9.2 123 143-273 2-126 (1232)
308 TIGR01075 uvrD DNA helicase II 95.8 0.02 4.4E-07 62.0 6.9 71 141-213 3-74 (715)
309 PRK14957 DNA polymerase III su 95.7 0.077 1.7E-06 54.8 10.6 40 260-300 117-156 (546)
310 PRK09183 transposase/IS protei 95.7 0.06 1.3E-06 50.4 9.1 25 154-178 99-123 (259)
311 TIGR01074 rep ATP-dependent DN 95.7 0.024 5.2E-07 61.0 7.3 68 143-212 2-70 (664)
312 PF05496 RuvB_N: Holliday junc 95.7 0.033 7.2E-07 50.0 6.9 17 159-175 52-68 (233)
313 CHL00181 cbbX CbbX; Provisiona 95.7 0.04 8.7E-07 52.3 8.0 21 157-177 59-79 (287)
314 PRK05896 DNA polymerase III su 95.7 0.062 1.3E-06 55.8 9.8 20 159-178 40-59 (605)
315 COG3973 Superfamily I DNA and 95.7 0.041 8.8E-07 55.9 8.0 84 130-213 193-285 (747)
316 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.18 3.9E-06 43.1 11.0 134 160-313 5-148 (159)
317 KOG0058 Peptide exporter, ABC 95.7 0.032 7E-07 58.0 7.5 141 154-301 491-660 (716)
318 TIGR02525 plasmid_TraJ plasmid 95.7 0.026 5.7E-07 55.4 6.6 55 121-194 131-185 (372)
319 TIGR00959 ffh signal recogniti 95.7 0.15 3.3E-06 51.1 12.0 58 159-221 101-160 (428)
320 PRK08451 DNA polymerase III su 95.7 0.077 1.7E-06 54.6 10.2 40 260-300 115-154 (535)
321 TIGR02760 TraI_TIGR conjugativ 95.7 0.13 2.8E-06 61.4 13.3 61 141-203 1018-1083(1960)
322 PRK11773 uvrD DNA-dependent he 95.7 0.023 4.9E-07 61.6 6.8 70 142-213 9-79 (721)
323 KOG0991 Replication factor C, 95.6 0.017 3.6E-07 51.6 4.5 36 261-297 112-147 (333)
324 TIGR00678 holB DNA polymerase 95.6 0.09 2E-06 46.6 9.5 20 159-178 16-35 (188)
325 COG1110 Reverse gyrase [DNA re 95.6 0.05 1.1E-06 58.5 8.8 73 345-417 113-191 (1187)
326 PF00004 AAA: ATPase family as 95.6 0.048 1E-06 44.9 7.3 15 160-174 1-15 (132)
327 PRK14963 DNA polymerase III su 95.6 0.03 6.4E-07 57.6 7.1 18 160-177 39-56 (504)
328 COG1484 DnaC DNA replication p 95.6 0.083 1.8E-06 49.2 9.5 47 156-206 104-150 (254)
329 PRK12422 chromosomal replicati 95.6 0.11 2.4E-06 52.6 11.0 50 261-310 201-252 (445)
330 PF05621 TniB: Bacterial TniB 95.6 0.03 6.5E-07 52.6 6.3 20 158-177 62-81 (302)
331 COG1435 Tdk Thymidine kinase [ 95.6 0.09 2E-06 45.9 8.7 89 159-274 6-94 (201)
332 PRK08699 DNA polymerase III su 95.6 0.086 1.9E-06 51.0 9.7 146 143-302 2-152 (325)
333 PRK14954 DNA polymerase III su 95.6 0.1 2.2E-06 54.9 10.8 19 160-178 41-59 (620)
334 COG0470 HolB ATPase involved i 95.5 0.034 7.4E-07 54.0 7.0 39 261-300 108-146 (325)
335 COG2804 PulE Type II secretory 95.5 0.028 6E-07 56.3 6.2 43 143-186 242-286 (500)
336 PRK10917 ATP-dependent DNA hel 95.5 0.1 2.2E-06 56.2 10.7 75 356-430 309-388 (681)
337 PHA03368 DNA packaging termina 95.4 0.1 2.2E-06 54.2 10.0 132 156-302 253-389 (738)
338 PRK13341 recombination factor 95.4 0.079 1.7E-06 56.8 9.7 39 262-305 109-147 (725)
339 PRK05986 cob(I)alamin adenolsy 95.4 0.055 1.2E-06 47.5 7.1 146 156-314 21-169 (191)
340 TIGR02928 orc1/cdc6 family rep 95.4 0.069 1.5E-06 52.9 8.8 24 158-182 41-64 (365)
341 TIGR02782 TrbB_P P-type conjug 95.4 0.065 1.4E-06 51.3 8.2 65 133-200 109-174 (299)
342 PRK13894 conjugal transfer ATP 95.4 0.051 1.1E-06 52.4 7.5 66 132-200 124-190 (319)
343 TIGR02880 cbbX_cfxQ probable R 95.4 0.052 1.1E-06 51.6 7.4 19 157-175 58-76 (284)
344 cd01122 GP4d_helicase GP4d_hel 95.4 0.054 1.2E-06 51.2 7.5 39 155-195 28-66 (271)
345 TIGR02524 dot_icm_DotB Dot/Icm 95.4 0.031 6.7E-07 54.8 5.9 26 157-183 134-159 (358)
346 PRK10416 signal recognition pa 95.3 0.61 1.3E-05 45.0 14.6 55 261-315 195-256 (318)
347 PF01443 Viral_helicase1: Vira 95.3 0.023 5.1E-07 52.3 4.7 14 160-173 1-14 (234)
348 COG4962 CpaF Flp pilus assembl 95.2 0.046 9.9E-07 52.1 6.3 58 140-201 155-213 (355)
349 PRK08533 flagellar accessory p 95.2 0.16 3.5E-06 46.6 9.9 52 156-211 23-74 (230)
350 PRK14950 DNA polymerase III su 95.2 0.28 6E-06 51.8 12.9 19 160-178 41-59 (585)
351 PRK13342 recombination factor 95.2 0.11 2.5E-06 52.2 9.7 17 159-175 38-54 (413)
352 PF06745 KaiC: KaiC; InterPro 95.2 0.031 6.8E-07 51.2 5.2 51 157-211 19-70 (226)
353 PRK00440 rfc replication facto 95.2 0.25 5.3E-06 47.8 11.8 38 262-300 102-139 (319)
354 COG0593 DnaA ATPase involved i 95.2 0.095 2.1E-06 51.7 8.5 47 262-308 175-223 (408)
355 COG2109 BtuR ATP:corrinoid ade 95.1 0.21 4.6E-06 43.3 9.5 140 160-314 31-176 (198)
356 PRK04841 transcriptional regul 95.1 0.12 2.7E-06 57.8 10.5 43 262-304 121-163 (903)
357 PRK11823 DNA repair protein Ra 95.1 0.11 2.4E-06 52.7 9.1 51 157-211 80-130 (446)
358 PRK09112 DNA polymerase III su 95.1 0.13 2.8E-06 50.4 9.2 41 260-301 139-179 (351)
359 PF05729 NACHT: NACHT domain 95.0 0.15 3.3E-06 43.7 8.8 18 159-176 2-19 (166)
360 TIGR00708 cobA cob(I)alamin ad 95.0 0.076 1.6E-06 45.9 6.5 54 260-313 95-150 (173)
361 PRK05580 primosome assembly pr 94.9 0.2 4.2E-06 53.9 10.9 75 357-432 190-265 (679)
362 TIGR03015 pepcterm_ATPase puta 94.9 0.5 1.1E-05 44.4 12.7 33 143-175 24-61 (269)
363 PHA00729 NTP-binding motif con 94.9 0.25 5.3E-06 44.8 9.7 17 159-175 19-35 (226)
364 COG4626 Phage terminase-like p 94.8 0.17 3.8E-06 51.2 9.5 149 142-302 61-224 (546)
365 PRK14948 DNA polymerase III su 94.8 0.15 3.3E-06 53.8 9.6 20 159-178 40-59 (620)
366 COG1474 CDC6 Cdc6-related prot 94.8 0.4 8.7E-06 47.2 11.7 27 158-185 43-69 (366)
367 PRK06647 DNA polymerase III su 94.7 0.29 6.3E-06 51.1 11.2 19 160-178 41-59 (563)
368 COG3972 Superfamily I DNA and 94.7 0.13 2.8E-06 51.1 8.0 80 130-212 151-230 (660)
369 TIGR00643 recG ATP-dependent D 94.7 0.21 4.6E-06 53.2 10.5 75 356-430 283-362 (630)
370 KOG1513 Nuclear helicase MOP-3 94.7 0.045 9.8E-07 57.0 5.1 59 401-459 851-917 (1300)
371 PRK07940 DNA polymerase III su 94.7 0.31 6.7E-06 48.5 10.9 20 159-178 38-57 (394)
372 PRK06620 hypothetical protein; 94.6 0.076 1.7E-06 48.1 6.0 18 158-175 45-62 (214)
373 cd00984 DnaB_C DnaB helicase C 94.6 0.059 1.3E-06 49.9 5.4 38 156-195 12-49 (242)
374 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.2 4.4E-06 45.9 8.9 36 157-195 20-55 (229)
375 COG0552 FtsY Signal recognitio 94.5 0.59 1.3E-05 44.5 11.6 131 160-315 142-281 (340)
376 TIGR00595 priA primosomal prot 94.5 0.26 5.7E-06 50.8 10.3 74 357-431 25-99 (505)
377 PRK14971 DNA polymerase III su 94.5 0.45 9.7E-06 50.3 12.2 42 259-302 118-159 (614)
378 PRK06305 DNA polymerase III su 94.5 0.39 8.4E-06 48.9 11.4 21 159-179 41-61 (451)
379 cd01121 Sms Sms (bacterial rad 94.5 0.24 5.2E-06 48.9 9.4 51 157-211 82-132 (372)
380 PRK06871 DNA polymerase III su 94.5 0.42 9E-06 46.2 10.8 37 143-179 3-46 (325)
381 PRK06964 DNA polymerase III su 94.4 0.14 3.1E-06 49.7 7.6 36 143-178 2-42 (342)
382 TIGR01073 pcrA ATP-dependent D 94.4 0.12 2.5E-06 56.3 7.8 71 141-213 3-74 (726)
383 COG1132 MdlB ABC-type multidru 94.3 0.12 2.7E-06 54.4 7.7 40 260-299 481-520 (567)
384 PRK08939 primosomal protein Dn 94.3 0.58 1.3E-05 44.9 11.4 20 157-176 156-175 (306)
385 PRK14953 DNA polymerase III su 94.2 0.14 2.9E-06 52.6 7.2 19 160-178 41-59 (486)
386 TIGR02397 dnaX_nterm DNA polym 94.1 0.09 1.9E-06 51.8 5.8 17 159-175 38-54 (355)
387 COG1618 Predicted nucleotide k 94.1 0.043 9.3E-07 46.2 2.8 116 159-289 7-129 (179)
388 PRK07133 DNA polymerase III su 94.1 0.14 3.1E-06 54.4 7.3 19 160-178 43-61 (725)
389 PRK13851 type IV secretion sys 94.1 0.085 1.8E-06 51.3 5.3 44 153-200 158-201 (344)
390 PF03266 NTPase_1: NTPase; In 94.0 0.023 4.9E-07 49.3 1.1 28 261-288 94-123 (168)
391 TIGR00767 rho transcription te 94.0 0.081 1.8E-06 52.0 4.9 28 155-183 166-193 (415)
392 PHA00350 putative assembly pro 93.9 0.73 1.6E-05 45.6 11.4 24 160-183 4-28 (399)
393 PRK13900 type IV secretion sys 93.9 0.19 4.1E-06 48.8 7.4 44 153-200 156-199 (332)
394 PF00265 TK: Thymidine kinase; 93.9 0.084 1.8E-06 46.1 4.5 36 160-198 4-39 (176)
395 PRK10436 hypothetical protein; 93.9 0.11 2.3E-06 52.8 5.9 40 144-184 203-244 (462)
396 PRK06090 DNA polymerase III su 93.9 0.21 4.6E-06 48.0 7.6 39 142-180 3-48 (319)
397 PF03969 AFG1_ATPase: AFG1-lik 93.9 0.91 2E-05 44.6 12.0 47 260-307 125-172 (362)
398 PF02572 CobA_CobO_BtuR: ATP:c 93.9 0.49 1.1E-05 40.9 9.0 141 160-312 6-148 (172)
399 TIGR00580 mfd transcription-re 93.8 0.39 8.5E-06 53.1 10.4 75 356-430 499-578 (926)
400 COG5008 PilU Tfp pilus assembl 93.8 0.099 2.1E-06 47.7 4.8 44 118-181 106-150 (375)
401 KOG0738 AAA+-type ATPase [Post 93.8 0.14 3E-06 49.4 5.9 16 158-173 246-261 (491)
402 TIGR02639 ClpA ATP-dependent C 93.7 0.42 9.1E-06 52.0 10.3 21 158-178 204-224 (731)
403 TIGR01420 pilT_fam pilus retra 93.7 0.16 3.5E-06 49.7 6.5 42 157-200 122-163 (343)
404 TIGR00635 ruvB Holliday juncti 93.7 0.12 2.6E-06 49.7 5.6 18 158-175 31-48 (305)
405 TIGR02868 CydC thiol reductant 93.6 0.13 2.8E-06 53.8 6.2 40 260-299 486-525 (529)
406 PRK06067 flagellar accessory p 93.6 1.4 3.1E-05 40.4 12.5 51 157-211 25-75 (234)
407 KOG0742 AAA+-type ATPase [Post 93.5 0.18 4E-06 48.9 6.3 16 158-173 385-400 (630)
408 PRK07993 DNA polymerase III su 93.5 0.3 6.5E-06 47.5 7.9 37 143-179 3-46 (334)
409 COG1222 RPT1 ATP-dependent 26S 93.4 0.48 1.1E-05 45.4 8.8 57 114-173 142-201 (406)
410 PRK14873 primosome assembly pr 93.4 0.45 9.8E-06 50.6 9.6 89 343-432 172-264 (665)
411 PRK11034 clpA ATP-dependent Cl 93.3 0.51 1.1E-05 51.1 9.9 21 157-177 207-227 (758)
412 cd01129 PulE-GspE PulE/GspE Th 93.3 0.2 4.3E-06 47.0 6.2 38 145-183 66-105 (264)
413 COG1219 ClpX ATP-dependent pro 93.2 0.063 1.4E-06 50.3 2.5 20 156-175 96-115 (408)
414 KOG1133 Helicase of the DEAD s 93.2 0.73 1.6E-05 47.8 10.1 78 356-436 628-720 (821)
415 COG2255 RuvB Holliday junction 93.1 0.24 5.1E-06 45.9 6.1 17 159-175 54-70 (332)
416 TIGR02237 recomb_radB DNA repa 93.1 0.56 1.2E-05 42.2 8.7 37 157-196 12-48 (209)
417 TIGR03877 thermo_KaiC_1 KaiC d 93.1 0.15 3.2E-06 47.1 4.9 51 157-211 21-71 (237)
418 cd01131 PilT Pilus retraction 93.0 0.14 2.9E-06 45.9 4.4 35 160-196 4-38 (198)
419 TIGR02533 type_II_gspE general 93.0 0.19 4.2E-06 51.4 6.1 39 144-183 227-267 (486)
420 PF03237 Terminase_6: Terminas 93.0 1.6 3.5E-05 42.9 12.7 144 161-318 1-154 (384)
421 PRK10689 transcription-repair 92.9 0.65 1.4E-05 52.7 10.5 75 356-430 648-727 (1147)
422 PRK07414 cob(I)yrinic acid a,c 92.9 0.37 8E-06 41.8 6.7 135 160-312 24-167 (178)
423 PF00437 T2SE: Type II/IV secr 92.9 0.15 3.2E-06 48.2 4.7 43 155-200 125-167 (270)
424 KOG1133 Helicase of the DEAD s 92.9 0.14 3E-06 52.9 4.6 42 142-183 15-60 (821)
425 PRK07413 hypothetical protein; 92.8 1.2 2.5E-05 43.7 10.7 185 160-358 22-228 (382)
426 PRK09087 hypothetical protein; 92.8 0.32 6.9E-06 44.5 6.6 38 264-303 89-126 (226)
427 PRK00080 ruvB Holliday junctio 92.8 0.19 4.2E-06 48.9 5.5 18 158-175 52-69 (328)
428 KOG0739 AAA+-type ATPase [Post 92.7 1.9 4.2E-05 40.3 11.3 49 151-206 155-208 (439)
429 TIGR02538 type_IV_pilB type IV 92.7 0.2 4.3E-06 52.5 5.8 39 144-183 301-341 (564)
430 TIGR02655 circ_KaiC circadian 92.7 0.46 1E-05 48.9 8.4 59 149-211 250-313 (484)
431 TIGR00763 lon ATP-dependent pr 92.6 1.9 4.1E-05 47.3 13.4 18 158-175 348-365 (775)
432 PRK05973 replicative DNA helic 92.6 0.24 5.2E-06 45.4 5.5 55 153-211 60-114 (237)
433 cd01128 rho_factor Transcripti 92.6 0.21 4.6E-06 46.3 5.2 20 154-173 13-32 (249)
434 cd01126 TraG_VirD4 The TraG/Tr 92.6 0.11 2.3E-06 51.9 3.6 47 159-210 1-47 (384)
435 PRK14970 DNA polymerase III su 92.5 0.67 1.4E-05 45.9 9.1 17 159-175 41-57 (367)
436 PRK09376 rho transcription ter 92.5 0.29 6.2E-06 48.0 6.1 27 156-183 168-194 (416)
437 KOG0741 AAA+-type ATPase [Post 92.5 1.1 2.4E-05 45.2 10.1 72 121-197 490-573 (744)
438 COG0541 Ffh Signal recognition 92.4 1.5 3.3E-05 43.3 10.9 131 160-315 103-236 (451)
439 COG0513 SrmB Superfamily II DN 92.4 0.7 1.5E-05 48.0 9.2 67 360-430 102-179 (513)
440 PRK13764 ATPase; Provisional 92.3 0.27 5.9E-06 51.3 6.1 46 119-183 237-282 (602)
441 PF01695 IstB_IS21: IstB-like 92.3 0.25 5.4E-06 43.3 5.1 44 154-201 44-87 (178)
442 PRK07399 DNA polymerase III su 92.1 1.8 3.8E-05 41.8 11.0 52 248-302 111-162 (314)
443 TIGR03346 chaperone_ClpB ATP-d 92.0 1.4 3.1E-05 48.8 11.6 19 158-176 195-213 (852)
444 PRK08058 DNA polymerase III su 92.0 0.81 1.8E-05 44.5 8.7 41 260-301 108-148 (329)
445 PF02534 T4SS-DNA_transf: Type 92.0 0.18 3.9E-06 51.9 4.4 49 158-211 45-93 (469)
446 cd03239 ABC_SMC_head The struc 91.7 0.17 3.8E-06 44.3 3.4 42 261-302 115-157 (178)
447 PRK09354 recA recombinase A; P 91.7 0.72 1.6E-05 44.8 7.9 41 157-200 60-100 (349)
448 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.7 0.76 1.6E-05 38.7 7.2 31 260-290 86-116 (144)
449 PHA00012 I assembly protein 91.6 2.2 4.8E-05 40.7 10.6 26 160-185 4-29 (361)
450 cd01130 VirB11-like_ATPase Typ 91.6 0.42 9.1E-06 42.2 5.7 33 142-174 9-42 (186)
451 COG1855 ATPase (PilT family) [ 91.5 0.34 7.4E-06 47.7 5.4 64 102-184 226-289 (604)
452 PRK10865 protein disaggregatio 91.5 1.6 3.5E-05 48.2 11.3 20 158-177 200-219 (857)
453 TIGR00416 sms DNA repair prote 91.5 0.77 1.7E-05 46.7 8.2 51 157-211 94-144 (454)
454 TIGR03878 thermo_KaiC_2 KaiC d 91.5 0.4 8.7E-06 44.9 5.7 36 157-195 36-71 (259)
455 PRK13897 type IV secretion sys 91.4 0.25 5.3E-06 51.9 4.7 56 158-222 159-214 (606)
456 TIGR02858 spore_III_AA stage I 91.4 1.5 3.3E-05 41.2 9.5 17 158-174 112-128 (270)
457 PHA03372 DNA packaging termina 91.4 1.2 2.6E-05 45.9 9.3 127 157-302 202-336 (668)
458 PF12846 AAA_10: AAA-like doma 91.4 0.23 4.9E-06 47.5 4.2 41 157-200 1-41 (304)
459 TIGR01243 CDC48 AAA family ATP 91.3 0.98 2.1E-05 49.2 9.4 18 157-174 212-229 (733)
460 TIGR00602 rad24 checkpoint pro 91.1 1.3 2.8E-05 46.8 9.6 45 120-175 81-128 (637)
461 cd03247 ABCC_cytochrome_bd The 91.1 0.93 2E-05 39.7 7.5 41 260-300 114-154 (178)
462 CHL00095 clpC Clp protease ATP 91.0 1.1 2.3E-05 49.5 9.4 22 158-179 201-222 (821)
463 PRK13695 putative NTPase; Prov 91.0 2.1 4.6E-05 37.2 9.6 18 159-176 2-19 (174)
464 cd01393 recA_like RecA is a b 90.9 0.86 1.9E-05 41.6 7.4 41 157-197 19-62 (226)
465 COG2812 DnaX DNA polymerase II 90.9 0.2 4.4E-06 51.0 3.4 28 260-291 117-144 (515)
466 PRK14701 reverse gyrase; Provi 90.9 1 2.2E-05 52.9 9.3 61 356-416 121-187 (1638)
467 TIGR02688 conserved hypothetic 90.9 1 2.2E-05 44.8 7.9 25 152-176 204-228 (449)
468 PF02606 LpxK: Tetraacyldisacc 90.9 8.7 0.00019 37.2 14.4 57 356-415 226-287 (326)
469 COG2874 FlaH Predicted ATPases 90.8 2.1 4.6E-05 38.1 9.1 128 159-303 30-167 (235)
470 TIGR03600 phage_DnaB phage rep 90.8 1.3 2.9E-05 44.7 9.2 38 156-195 193-230 (421)
471 KOG0737 AAA+-type ATPase [Post 90.8 0.9 2E-05 43.7 7.3 54 121-174 90-144 (386)
472 cd03276 ABC_SMC6_euk Eukaryoti 90.8 1.7 3.7E-05 38.8 8.9 42 261-302 130-174 (198)
473 PRK04328 hypothetical protein; 90.8 0.38 8.2E-06 44.8 4.8 51 157-211 23-73 (249)
474 PF03796 DnaB_C: DnaB-like hel 90.6 1.2 2.5E-05 41.8 8.0 37 158-196 20-56 (259)
475 TIGR02640 gas_vesic_GvpN gas v 90.5 0.31 6.7E-06 45.8 4.0 28 148-175 12-39 (262)
476 PF01637 Arch_ATPase: Archaeal 90.5 0.21 4.5E-06 45.6 2.9 16 158-173 21-36 (234)
477 PRK13850 type IV secretion sys 90.4 0.38 8.2E-06 51.2 5.0 47 158-209 140-186 (670)
478 PRK11634 ATP-dependent RNA hel 90.4 1.5 3.3E-05 46.6 9.5 70 357-430 74-154 (629)
479 cd03228 ABCC_MRP_Like The MRP 90.3 0.8 1.7E-05 39.8 6.3 40 260-300 112-151 (171)
480 PLN00020 ribulose bisphosphate 90.3 0.19 4.2E-06 48.7 2.5 17 158-174 149-165 (413)
481 PF08423 Rad51: Rad51; InterP 90.2 0.57 1.2E-05 43.7 5.5 49 150-198 26-82 (256)
482 KOG0780 Signal recognition par 90.2 3.1 6.8E-05 40.4 10.3 130 159-314 103-236 (483)
483 KOG0744 AAA+-type ATPase [Post 90.2 1.5 3.3E-05 41.5 8.0 67 158-225 178-258 (423)
484 PF13555 AAA_29: P-loop contai 90.1 0.23 4.9E-06 34.9 2.1 17 158-174 24-40 (62)
485 cd01125 repA Hexameric Replica 90.0 1.5 3.2E-05 40.5 8.1 37 159-195 3-48 (239)
486 CHL00176 ftsH cell division pr 89.9 1 2.2E-05 47.8 7.6 18 158-175 217-234 (638)
487 TIGR02788 VirB11 P-type DNA tr 89.9 0.55 1.2E-05 45.2 5.3 21 154-174 141-161 (308)
488 KOG2227 Pre-initiation complex 89.8 0.99 2.1E-05 44.9 6.8 48 158-206 176-224 (529)
489 cd03238 ABC_UvrA The excision 89.8 0.56 1.2E-05 41.0 4.8 43 260-302 103-148 (176)
490 PF06733 DEAD_2: DEAD_2; Inte 89.7 0.17 3.6E-06 44.2 1.5 44 233-276 114-159 (174)
491 COG1200 RecG RecG-like helicas 89.7 2.4 5.2E-05 44.3 9.8 76 355-430 309-389 (677)
492 KOG1513 Nuclear helicase MOP-3 89.6 0.15 3.3E-06 53.3 1.2 157 142-303 264-454 (1300)
493 COG1198 PriA Primosomal protei 89.6 0.99 2.1E-05 48.2 7.2 89 341-430 227-318 (730)
494 COG0630 VirB11 Type IV secreto 89.6 0.51 1.1E-05 45.4 4.8 55 142-200 127-182 (312)
495 PF12775 AAA_7: P-loop contain 89.6 0.41 9E-06 45.1 4.0 24 150-173 25-49 (272)
496 cd00268 DEADc DEAD-box helicas 89.5 3.2 6.9E-05 37.0 9.8 71 356-430 68-148 (203)
497 KOG0734 AAA+-type ATPase conta 89.5 1.8 4E-05 43.8 8.4 41 262-302 396-446 (752)
498 PRK10787 DNA-binding ATP-depen 89.4 4.8 0.00011 44.0 12.5 18 157-174 349-366 (784)
499 TIGR03819 heli_sec_ATPase heli 89.3 1.1 2.3E-05 43.8 6.8 63 132-200 154-217 (340)
500 TIGR02203 MsbA_lipidA lipid A 89.3 0.63 1.4E-05 49.2 5.7 43 260-302 485-527 (571)
No 1
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-77 Score=530.22 Aligned_cols=389 Identities=77% Similarity=1.166 Sum_probs=377.1
Q ss_pred CCCCchhHhhhcCCCCCCCCccccccccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCC
Q 011446 89 VDPSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGT 168 (485)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGs 168 (485)
.+....+|+...+.|+.+.++.++++...+..+|+++.|.++++..++++||+.|.|+|.++||.++.|+|+++.|..|+
T Consensus 54 ~~~~~~dwk~~l~lpp~d~R~~t~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGT 133 (459)
T KOG0326|consen 54 EEANGKDWKATLKLPPKDTRYKTEDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGT 133 (459)
T ss_pred ccccchhhHHhccCCCCCccccccccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCC
Confidence 33478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchH
Q 011446 169 GKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGR 248 (485)
Q Consensus 169 GKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~ 248 (485)
|||.+|.+|+++.+....+..+++|++|+|+||.|+.+.++++.+.+++.++..+||++.++++.++.+..+++|+|||+
T Consensus 134 GKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGR 213 (459)
T KOG0326|consen 134 GKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGR 213 (459)
T ss_pred CCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChh
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccc
Q 011446 249 ILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELT 328 (485)
Q Consensus 249 l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (485)
++++..++...++++.++|+||||.+++.+|.+.+..++..+|+++|++++|||+|..+..|..+++.+|+.+++.++..
T Consensus 214 IlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLt 293 (459)
T KOG0326|consen 214 ILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELT 293 (459)
T ss_pred HHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCc
Q 011446 329 LKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC 408 (485)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~ 408 (485)
..++.+||.++.+..|..+|..++.+..-.+.|||||+...+|.+++.+.++|+.+.++|+.|.++.|.++|+.|++|.+
T Consensus 294 l~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~c 373 (459)
T KOG0326|consen 294 LKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKC 373 (459)
T ss_pred hcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccccccC
Q 011446 409 RNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 409 ~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~~~~~ 477 (485)
+.||||+.+.||||+++|++||+||+|++.++|.||+||+||.|++|.+- ...+..++..+..+++.++
T Consensus 374 rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 374 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 99999999999999999999999999999999999999999999999874 3356778888988888776
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-67 Score=513.75 Aligned_cols=340 Identities=34% Similarity=0.604 Sum_probs=318.6
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhc------cCCceEEE
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ------DNNVIQVV 192 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~------~~~~~~~l 192 (485)
...|.++++++++...++..||..|+|+|..+||.++.|+|++..+.||||||++|++|++.++.. .+.++.+|
T Consensus 90 ~~~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVL 169 (519)
T ss_pred chhhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEE
Confidence 338999999999999999999999999999999999999999999999999999999999999976 45678999
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc
Q 011446 193 ILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD 272 (485)
Q Consensus 193 il~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah 272 (485)
|++|||+||.|+...+.+++..+.++..+++||.....+...+..+.+|+|+|||+|.++++.+...++++.++|+||||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD 249 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD 249 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHhC-CCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc---cccccceEEEEeehhhhhHHHH
Q 011446 273 KLLSPEFQPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE---LTLKGITQYYAFVEERQKVHCL 348 (485)
Q Consensus 273 ~~~~~~~~~~~~~i~~~~-~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 348 (485)
+|++++|.+.++.|+..+ +++.|++++|||+|..++.++..|+.+|..+.+... ....++.+....++...|...+
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l 329 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKL 329 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHH
Confidence 999999999999999999 666789999999999999999999999988877643 4456788888888888888888
Q ss_pred HHHHHhc---CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 011446 349 NTLFSKL---QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA 425 (485)
Q Consensus 349 ~~l~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~ 425 (485)
..++... ..+++||||++++.|+.++..|...++++..+||+.++.+|+.+++.|++|++.||||||+|+||||||+
T Consensus 330 ~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~d 409 (519)
T KOG0331|consen 330 GKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPD 409 (519)
T ss_pred HHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcc
Confidence 8888766 4569999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 426 VNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 426 v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
|++||+||+|.++++|+||+||+||+|+.|...
T Consensus 410 V~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 410 VDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAI 442 (519)
T ss_pred ccEEEeCCCCCCHHHHHhhcCccccCCCCceEE
Confidence 999999999999999999999999977777654
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-67 Score=480.19 Aligned_cols=342 Identities=34% Similarity=0.578 Sum_probs=324.6
Q ss_pred cCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
.....+|.++++.+++++++.+.++..|+++|+++||.++.|+|+|+.|+||||||.+|++|+++.+.+.+..+.++|++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLt 136 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLT 136 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEec
Confidence 34556899999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhh-cCccccCCcceEEeeccccc
Q 011446 196 PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSK-KGVCILKDCSMLVMDEADKL 274 (485)
Q Consensus 196 P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~-~~~~~l~~~~~iViDEah~~ 274 (485)
|||+||.|+.+.+..++...|+.+.++.||.+...+...+...++|+|+|||+|++++. .+...++.++++|+||||++
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999988 46777999999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc-cccccceEEEEeehhhhhHHHHHHHHH
Q 011446 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHCLNTLFS 353 (485)
Q Consensus 275 ~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~ 353 (485)
++++|...+..|++.++..+|++++|||++..+.++....+.+|..+..... ...+.+.++|.+++...|...|..+++
T Consensus 217 Ld~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~ 296 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLN 296 (476)
T ss_pred hhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHH
Confidence 9999999999999999999999999999999999999999999877766543 345788899999999999999999999
Q ss_pred hcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcC
Q 011446 354 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (485)
Q Consensus 354 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (485)
+...+.+||||++...+..++-.|..+|+.+.++||.|++..|.-.++.|++|.+.||||||+++||+|||.|++|||||
T Consensus 297 e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 297 ELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred hhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhhccccCccccc
Q 011446 434 FPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
+|.+..+|+||+||.+|+|+-|..
T Consensus 377 iP~~skDYIHRvGRtaRaGrsG~~ 400 (476)
T KOG0330|consen 377 IPTHSKDYIHRVGRTARAGRSGKA 400 (476)
T ss_pred CCCcHHHHHHHcccccccCCCcce
Confidence 999999999999999998877665
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-63 Score=502.09 Aligned_cols=339 Identities=39% Similarity=0.645 Sum_probs=318.5
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhc--cCCceEEEEEcCc
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ--DNNVIQVVILVPT 197 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~--~~~~~~~lil~P~ 197 (485)
..|.++++++.+++++.+.||..|+|+|..+||.++.|+|+++.++||||||++|.+|+++.+.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999874 2222129999999
Q ss_pred HHHHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC
Q 011446 198 RELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS 276 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~ 276 (485)
|+||.|+++.+..+.... ++.+..++||.+...+...+..+++|+|+||+++++++.+..+.++.+.++|+||||+|++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999998 7999999999999999988888899999999999999999989999999999999999999
Q ss_pred CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-cc--ccccceEEEEeehhhh-hHHHHHHHH
Q 011446 277 PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-EL--TLKGITQYYAFVEERQ-KVHCLNTLF 352 (485)
Q Consensus 277 ~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~-~~~~l~~l~ 352 (485)
.+|...+..++..++.+.|++++|||+|..+..+...++.+|..+.+.. .. ....+.+++..+.... |...|..++
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998777762 22 5678899999888766 999999999
Q ss_pred HhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEc
Q 011446 353 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF 432 (485)
Q Consensus 353 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~ 432 (485)
......++||||+++..++.++..|...|+.+..+||+|++.+|.++++.|++|..+||||||+++||||||+|.+||||
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhhhccccCcccccc
Q 011446 433 DFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 433 ~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
|+|.+.+.|+||+||+||+|+-|...
T Consensus 349 D~p~~~e~yvHRiGRTgRaG~~G~ai 374 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAGRKGVAI 374 (513)
T ss_pred cCCCCHHHheeccCccccCCCCCeEE
Confidence 99999999999999999999887653
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.6e-61 Score=493.09 Aligned_cols=342 Identities=31% Similarity=0.544 Sum_probs=307.4
Q ss_pred cCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc-----CCceE
Q 011446 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-----NNVIQ 190 (485)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-----~~~~~ 190 (485)
+.+..+|+++++++.+++.|.+.||..|+++|.++||.+++++|+|+++|||||||++|++|++..+... +.++.
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~ 205 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPI 205 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcE
Confidence 4556789999999999999999999999999999999999999999999999999999999999876532 24578
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeec
Q 011446 191 VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDE 270 (485)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDE 270 (485)
+|||+||++||.|+.+.+.++....++.+.+.+|+.....+...+..+++|+|+||++|.+++.+....++++++|||||
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDE 285 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDE 285 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeeh
Confidence 99999999999999999999999889999999999998888888888999999999999999998888899999999999
Q ss_pred cccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcC-CCeEEeeccc--cccccceEEEEeehhhhhHHH
Q 011446 271 ADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQ-KPYVINLMDE--LTLKGITQYYAFVEERQKVHC 347 (485)
Q Consensus 271 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 347 (485)
||++++.+|...+..++..++++.|++++|||+|..+..+...++. .+..+.+... ....++.+.+..+....|...
T Consensus 286 Ad~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~ 365 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGK 365 (545)
T ss_pred HHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHH
Confidence 9999999999999999999999999999999999999999888875 4544443321 223456666767777777777
Q ss_pred HHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 011446 348 LNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA 425 (485)
Q Consensus 348 l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~ 425 (485)
+..++... ...++||||++++.|+.++..|...++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+
T Consensus 366 L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~ 445 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKD 445 (545)
T ss_pred HHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCccc
Confidence 87777765 4569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 426 VNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 426 v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
|++||+||+|.+.++|+||+||+||.|+.+..
T Consensus 446 v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a 477 (545)
T PTZ00110 446 VKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS 477 (545)
T ss_pred CCEEEEeCCCCCHHHHHHHhcccccCCCCceE
Confidence 99999999999999999999999999886544
No 6
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-62 Score=428.66 Aligned_cols=360 Identities=38% Similarity=0.650 Sum_probs=334.4
Q ss_pred CCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
....|++++|.+++++.+++.||++|..+|+.||+.|+.|+|+++.+..|+|||.+|.+.+++.+.-.....+++|++||
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPT 104 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPT 104 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecCh
Confidence 34579999999999999999999999999999999999999999999999999999999999988877666799999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC
Q 011446 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (485)
|+||.|+.+++..++..+++.+....||.+..++++.+..+.+++.+|||++.+++++..+.-+.++++|+||||.|++.
T Consensus 105 RELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~k 184 (400)
T KOG0328|consen 105 RELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNK 184 (400)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeec-cccccccceEEEEeehhhh-hHHHHHHHHHhc
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVEERQ-KVHCLNTLFSKL 355 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~ 355 (485)
+|...+..+.+.++++.|++++|||+|.++.+...+|+.+|..+... .+.+.+++.+++..++.+. |.+.|.+++...
T Consensus 185 gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~L 264 (400)
T KOG0328|consen 185 GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 264 (400)
T ss_pred hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhh
Confidence 99999999999999999999999999999999999999999776554 5677788888888777655 999999999999
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP 435 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p 435 (485)
.-.+.+|||+|+..++-|.+.|.+..+.+..+||+|++++|+++++.|+.|+.+|||+|++.++|+|+|.|.+|||||+|
T Consensus 265 tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 265 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccccccC
Q 011446 436 KNSETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 436 ~s~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~~~~~ 477 (485)
.+.+.|+||+||.||.|+.|..- ..-+-+++.|....+++.+
T Consensus 345 ~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp 393 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMP 393 (400)
T ss_pred ccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999998774 3345556777766666544
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-60 Score=485.48 Aligned_cols=359 Identities=33% Similarity=0.547 Sum_probs=324.3
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
.+|++++|++.+++++.+.||..|+|+|.++|+.++.++|++++||||||||++|++|+++.+......+++||++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 46899999999999999999999999999999999999999999999999999999999999876655678999999999
Q ss_pred HHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC
Q 011446 200 LALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (485)
Q Consensus 200 la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (485)
|+.|+.+.++.++... ++.+..++|+.+...+...+..+++|+|+||++|.+++.++...++++++||+||||++++.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 9999999999987654 688999999999988888888899999999999999998888889999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCC
Q 011446 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQIN 358 (485)
Q Consensus 279 ~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 358 (485)
|...+..++..++...|++++|||+|..+..+...++.+|..+.+........+.+++..+....+...+..++......
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~ 243 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQPE 243 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999998877765555566777777777777889999999888888
Q ss_pred cEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCCh
Q 011446 359 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNS 438 (485)
Q Consensus 359 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~ 438 (485)
++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||++|+|.+.
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~ 323 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDP 323 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccccccCC
Q 011446 439 ETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTDRLVDL 478 (485)
Q Consensus 439 ~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 478 (485)
.+|+||+||+||.|.-|... ...+..++++....+...++
T Consensus 324 ~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l 370 (460)
T PRK11776 324 EVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPL 370 (460)
T ss_pred hHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecC
Confidence 99999999999998765432 33444566666555444333
No 8
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.4e-61 Score=455.99 Aligned_cols=344 Identities=32% Similarity=0.512 Sum_probs=320.7
Q ss_pred ccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc---------
Q 011446 115 TATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD--------- 185 (485)
Q Consensus 115 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~--------- 185 (485)
.+.+-.+|++.+++.++++.+.+.||..|+|+|+.+||..+.++|+|.+++||||||++|++|++..+..-
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 45566789999999999999999999999999999999999999999999999999999999999877432
Q ss_pred CCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcce
Q 011446 186 NNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSM 265 (485)
Q Consensus 186 ~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~ 265 (485)
..++.++|+.|||+|+.|+.....++++..+++++.++||....++-..+..+|+|+|+||++|++.+.+..+.++.+.+
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qcty 399 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTY 399 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCce
Confidence 34679999999999999999999999999999999999999999998899999999999999999999998888999999
Q ss_pred EEeeccccccCCCCHHHHHHHHHhCCCC-------------------------CcEEEEecccchHHHHHHHHhcCCCeE
Q 011446 266 LVMDEADKLLSPEFQPSVEQLIRFLPAN-------------------------RQILMFSATFPVTVKDFKDKYLQKPYV 320 (485)
Q Consensus 266 iViDEah~~~~~~~~~~~~~i~~~~~~~-------------------------~~~i~~SATl~~~~~~~~~~~~~~~~~ 320 (485)
||+|||++|++++|.+.+..++..+|.. +|.++||||+|+.+..++..|+.+|..
T Consensus 400 vvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~ 479 (673)
T KOG0333|consen 400 VVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVV 479 (673)
T ss_pred EeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeE
Confidence 9999999999999999999999988631 589999999999999999999999988
Q ss_pred Eeecc-ccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHH
Q 011446 321 INLMD-ELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV 399 (485)
Q Consensus 321 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i 399 (485)
+.+.. .-+.+.+.+.+.++....+...|..++......++|||+|+++.|+.|++.|.+.++.+..|||+-++++|+.+
T Consensus 480 vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~a 559 (673)
T KOG0333|consen 480 VTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENA 559 (673)
T ss_pred EEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHH
Confidence 87763 34456778888888888889999999998877899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 400 FHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 400 ~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+..|++|...|||||+++++|||||+|.+||+||+++|+++|.|||||+||+|+-|...
T Consensus 560 L~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 560 LADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI 618 (673)
T ss_pred HHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE
Confidence 99999999999999999999999999999999999999999999999999999888764
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.1e-59 Score=476.13 Aligned_cols=360 Identities=32% Similarity=0.550 Sum_probs=319.3
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC------CceEEEEE
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN------NVIQVVIL 194 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~------~~~~~lil 194 (485)
+|++++|++.+++.+.+.||..|+++|.++|+.++.++|+|+++|||||||++|++|+++.+.... ..+++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 588999999999999999999999999999999999999999999999999999999999886432 23589999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccc
Q 011446 195 VPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (485)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (485)
+||++||.|+.+.+..+....++.+..++|+.+...+...+...++|+|+||++|++++......++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999998999999999999988888888888999999999999988887778999999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-ccccccceEEEEeehhhhhHHHHHHHHH
Q 011446 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEERQKVHCLNTLFS 353 (485)
Q Consensus 275 ~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 353 (485)
++.+|...+..++..++...|++++|||++.++..+...++.+|..+.+.. ......+.+++..++...+...+..++.
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~ 241 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIG 241 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887665543 2334566777777777788888888888
Q ss_pred hcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcC
Q 011446 354 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (485)
Q Consensus 354 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (485)
.....++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+|+
T Consensus 242 ~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~ 321 (456)
T PRK10590 242 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYE 321 (456)
T ss_pred cCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccccccCCCC
Q 011446 434 FPKNSETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTDRLVDLEG 480 (485)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 480 (485)
+|.+..+|+||+||+||.|..+... ...+..+++++..++....+++
T Consensus 322 ~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~~~~~ 375 (456)
T PRK10590 322 LPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPG 375 (456)
T ss_pred CCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcccccCC
Confidence 9999999999999999998755442 2344455666555554444443
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.1e-60 Score=474.27 Aligned_cols=340 Identities=28% Similarity=0.460 Sum_probs=306.9
Q ss_pred CCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc-------CCceE
Q 011446 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-------NNVIQ 190 (485)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-------~~~~~ 190 (485)
....|++++|++.+++++.+.||..|+++|.++||.++.++|++++||||||||++|++|+++.+... ..+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 44679999999999999999999999999999999999999999999999999999999999887542 23468
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeec
Q 011446 191 VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDE 270 (485)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDE 270 (485)
+||++||++||.|+++.+..+....++.+..++|+.....+...+..+++|+|+||++|.+++.+....++++++||+||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999999999999999999988888788888899999999999999988888899999999999
Q ss_pred cccccCCCCHHHHHHHHHhCCC--CCcEEEEecccchHHHHHHHHhcCCCeEEeeccc-cccccceEEEEeehhhhhHHH
Q 011446 271 ADKLLSPEFQPSVEQLIRFLPA--NRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHC 347 (485)
Q Consensus 271 ah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 347 (485)
||++++.+|...+..++..++. ..+.+++|||++..+..+...++.+|..+.+... .....+.+.+.......+...
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHH
Confidence 9999999999999999998874 4568999999999999999888888877765432 223455555566666778888
Q ss_pred HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCC
Q 011446 348 LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (485)
Q Consensus 348 l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (485)
+..++......++||||++++.|+.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 246 l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 246 LQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 88888877778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 428 VVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
+||+||+|.+.++|+||+||+||.|+.|..
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a 355 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHS 355 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeE
Confidence 999999999999999999999999886543
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-61 Score=456.74 Aligned_cols=339 Identities=34% Similarity=0.525 Sum_probs=308.6
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCC---ceEEEEEc
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN---VIQVVILV 195 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~---~~~~lil~ 195 (485)
..+|.+++|+.++++++...||..|+|+|..+||..+-|+|++.+|.||||||.+|++|+|+++.-.+. ..+|||+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 347999999999999999999999999999999999999999999999999999999999999876553 36999999
Q ss_pred CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC-ccccCCcceEEeeccccc
Q 011446 196 PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADKL 274 (485)
Q Consensus 196 P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~-~~~l~~~~~iViDEah~~ 274 (485)
|||+|+.|++++.+.++..+.+.++...||.+.+.+...++..++|+|+|||+|.+++.+. .+.++++.++|+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998874 667999999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc-cccccceEEEEeeh---hhhhHHHHHH
Q 011446 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVE---ERQKVHCLNT 350 (485)
Q Consensus 275 ~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~l~~ 350 (485)
++.+|...+..|+..++.++|.++||||++..+.+++...++.|..+.+... ...+.+.+.|..+. +..+...+..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999987776543 23345555555443 3346677888
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEE
Q 011446 351 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 430 (485)
Q Consensus 351 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI 430 (485)
++.+.-...++||+.+++.|..+.-.|--+|+.+.-+||.+++++|-..++.|+++++.|||||+++++|+||++|..||
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI 499 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI 499 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE
Confidence 88887788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChHHHHHHhhhccccCccccc
Q 011446 431 NFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 431 ~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
||.+|.+...|+||+||+.|+|+-|..
T Consensus 500 Ny~mP~t~e~Y~HRVGRTARAGRaGrs 526 (691)
T KOG0338|consen 500 NYAMPKTIEHYLHRVGRTARAGRAGRS 526 (691)
T ss_pred eccCchhHHHHHHHhhhhhhcccCcce
Confidence 999999999999999986555554443
No 12
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.7e-60 Score=448.25 Aligned_cols=352 Identities=35% Similarity=0.516 Sum_probs=317.2
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC----CceEEEEE
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN----NVIQVVIL 194 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil 194 (485)
...|++..|++..+++++++||..++++|+.+|+.++.|+|+++.|.||+|||++|++|+++.+.... ++..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 45688899999999999999999999999999999999999999999999999999999999987543 55689999
Q ss_pred cCcHHHHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCc-cccCCcceEEeeccc
Q 011446 195 VPTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV-CILKDCSMLVMDEAD 272 (485)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~-~~l~~~~~iViDEah 272 (485)
||||+||.|++.+++++.... ++.+..+.||++...+...+..++.|+|+|||+|++++++.. ....+++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999988 899999999999999999998999999999999999999854 345667899999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCC-CeEEeecc---ccccccceEEEEeehhhhhHHHH
Q 011446 273 KLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQK-PYVINLMD---ELTLKGITQYYAFVEERQKVHCL 348 (485)
Q Consensus 273 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l 348 (485)
++++.+|...++.|+..++..+|.+++|||.|..++++....+.. |.++.... ..+...+.+-|...+....+.++
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 999999999999999999999999999999999999999887665 66666553 34556788878888888888888
Q ss_pred HHHHHhcCC-CcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCC
Q 011446 349 NTLFSKLQI-NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (485)
Q Consensus 349 ~~l~~~~~~-~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (485)
..++++... .++||||+|...+..+++.|....++|..+||++++..|..++..|++.+..||||||+++||+|+|+|+
T Consensus 321 ~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~ 400 (543)
T KOG0342|consen 321 YTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVD 400 (543)
T ss_pred HHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCce
Confidence 888888766 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChHHHHHHhhhccccCcccccc---hHHHHHHHHHhh
Q 011446 428 VVINFDFPKNSETYLHRVCWIQLSFSLSLPN---LQFMCSMLMYIC 470 (485)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~---~~~~~~~~~~~~ 470 (485)
+||++|+|.+.++|+||+||+||.|.-|..- .-+-..+.+|++
T Consensus 401 ~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 401 WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999987776654 233344555555
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.9e-59 Score=480.84 Aligned_cols=338 Identities=32% Similarity=0.548 Sum_probs=310.5
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
..|.+++|++.+++++.++||..|+|+|.++|+.++.++|+|+.||||||||++|.+|++..+......+++||++||++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876656679999999999
Q ss_pred HHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC
Q 011446 200 LALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (485)
Q Consensus 200 la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (485)
|+.|+++.+.++.... ++.+..++|+.+...+...+...++|+|+||++|++++.+....++++++|||||||+|++.+
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g 165 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG 165 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc
Confidence 9999999999887765 788999999999888888888889999999999999998888889999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc-cccccceEEEEeehhhhhHHHHHHHHHhcCC
Q 011446 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHCLNTLFSKLQI 357 (485)
Q Consensus 279 ~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 357 (485)
|...+..++..++...|+++||||+|..+..+...++.+|..+.+... ...+.+.+.+..+....+...+..++.....
T Consensus 166 f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~ 245 (629)
T PRK11634 166 FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF 245 (629)
T ss_pred cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999998877655433 3345666777777777788888888888777
Q ss_pred CcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCC
Q 011446 358 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKN 437 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s 437 (485)
.++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++||+||+|.+
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~ 325 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMD 325 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhccccCccccc
Q 011446 438 SETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 438 ~~~~~Qr~GRagR~g~~~~~ 457 (485)
.++|+||+||+||.|+.+..
T Consensus 326 ~e~yvqRiGRtGRaGr~G~a 345 (629)
T PRK11634 326 SESYVHRIGRTGRAGRAGRA 345 (629)
T ss_pred HHHHHHHhccccCCCCcceE
Confidence 99999999999999885543
No 14
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-59 Score=436.29 Aligned_cols=338 Identities=33% Similarity=0.526 Sum_probs=307.2
Q ss_pred cccccC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-----CceEEEE
Q 011446 121 EFEDYF--LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-----NVIQVVI 193 (485)
Q Consensus 121 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-----~~~~~li 193 (485)
.|++++ |++.+++++.+.||..+||+|..+||.++.++|+++.++||||||++|++|+++.+..+. ....+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 455555 559999999999999999999999999999999999999999999999999999984322 1146899
Q ss_pred EcCcHHHHHHHHHHHHHHhcc-CCceEEEEECCCChHHHHHHhc-CCCeEEEEcchHHHHhhhcCccc--cCCcceEEee
Q 011446 194 LVPTRELALQTSQVCKELGKH-LNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCI--LKDCSMLVMD 269 (485)
Q Consensus 194 l~P~~~la~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~~~~~~~~--l~~~~~iViD 269 (485)
|+|||+|+.|+.+++..+... .++++.+++||.+..+++..+. .++.|+|+|||+|.+++.+.... +.+++++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999999887 5788999999999998887775 46789999999999999885443 4599999999
Q ss_pred ccccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecccc---ccccceEEEEeehhhhhHH
Q 011446 270 EADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL---TLKGITQYYAFVEERQKVH 346 (485)
Q Consensus 270 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 346 (485)
|||++++++|...++.|+..+|..+++=++|||....+.++....+.+|..+.+.... .+..+..+|..++...|..
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~ 244 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLS 244 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888776544 5667888999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 011446 347 CLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (485)
Q Consensus 347 ~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (485)
.+.+++.....+++|||++|...++.++..|... ...++.+||.|.+..|..+++.|....-.||+|||+++||||||
T Consensus 245 ~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip 324 (567)
T KOG0345|consen 245 QLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIP 324 (567)
T ss_pred HHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCC
Confidence 9999999988899999999999999999998775 67899999999999999999999998888999999999999999
Q ss_pred CCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 425 AVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 425 ~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+|++||+||+|.+...|+||+||++|.|+.|..-
T Consensus 325 ~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Ai 358 (567)
T KOG0345|consen 325 GIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAI 358 (567)
T ss_pred CceEEEecCCCCChhHHHhhcchhhhccCccceE
Confidence 9999999999999999999999999999888663
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-58 Score=475.09 Aligned_cols=337 Identities=30% Similarity=0.498 Sum_probs=304.8
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc-------CCceEEE
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-------NNVIQVV 192 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-------~~~~~~l 192 (485)
.+|++++|++.+++.|.+.||..|+|+|.++||.+++++|+++.+|||||||++|++|+++.+... ...+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 369999999999999999999999999999999999999999999999999999999999987532 1246999
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC-ccccCCcceEEeecc
Q 011446 193 ILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEA 271 (485)
Q Consensus 193 il~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~-~~~l~~~~~iViDEa 271 (485)
||+||++|+.|+++.+.++....++.+..++|+.....+...+...++|+|+||++|++++... ...+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999999988887778788999999999999988764 456888999999999
Q ss_pred ccccCCCCHHHHHHHHHhCCC--CCcEEEEecccchHHHHHHHHhcCCCeEEeec-cccccccceEEEEeehhhhhHHHH
Q 011446 272 DKLLSPEFQPSVEQLIRFLPA--NRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVEERQKVHCL 348 (485)
Q Consensus 272 h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 348 (485)
|++++.+|...+..++..++. ..|++++|||++..+..+...++..|..+... .......+.+.+.......+...+
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHH
Confidence 999999999999999998876 78999999999999999999998887655443 233445566777777777788888
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCE
Q 011446 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (485)
Q Consensus 349 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (485)
..++......++||||++++.|+.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++
T Consensus 249 ~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~ 328 (572)
T PRK04537 249 LGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKY 328 (572)
T ss_pred HHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCE
Confidence 88888777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChHHHHHHhhhccccCcccc
Q 011446 429 VINFDFPKNSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~~~ 456 (485)
||+||+|.+.++|+||+||+||.|.-+.
T Consensus 329 VInyd~P~s~~~yvqRiGRaGR~G~~G~ 356 (572)
T PRK04537 329 VYNYDLPFDAEDYVHRIGRTARLGEEGD 356 (572)
T ss_pred EEEcCCCCCHHHHhhhhcccccCCCCce
Confidence 9999999999999999999999987654
No 16
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-59 Score=445.41 Aligned_cols=338 Identities=34% Similarity=0.529 Sum_probs=314.5
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc----CCceEEEEE
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD----NNVIQVVIL 194 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil 194 (485)
...|.+++|+....++|++.+|..++.+|+.+||..+.|+|++..+.||||||++|++|+++.+... ..|.-+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 3469999999999999999999999999999999999999999999999999999999999998753 356789999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC-ccccCCcceEEeecccc
Q 011446 195 VPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADK 273 (485)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~-~~~l~~~~~iViDEah~ 273 (485)
+|||+||.|+++++.++++..+...+.++||.+...+...+ ..++|+|||||+|+.++... .+.-.++.++|+||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999999988776665 57899999999999999875 44567889999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc---ccccccceEEEEeehhhhhHHHHHH
Q 011446 274 LLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD---ELTLKGITQYYAFVEERQKVHCLNT 350 (485)
Q Consensus 274 ~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~ 350 (485)
|++++|...+..|+..+|+.+|+++||||.+..+.++++..+.+|.++.+.. ...+.++.++|..++...|++.|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887763 4466789999999999999999999
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCE
Q 011446 351 LFSKLQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (485)
Q Consensus 351 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (485)
++..+...++|||+.|.+++..+++.++++ |+.+..+||.|++..|..+++.|-.....||+||++++||+|+|.|++
T Consensus 307 FI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdw 386 (758)
T KOG0343|consen 307 FIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDW 386 (758)
T ss_pred HHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccce
Confidence 999999999999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 429 VINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
||++|+|.++++|+||+||+.|.+.-|..
T Consensus 387 ViQ~DCPedv~tYIHRvGRtAR~~~~G~s 415 (758)
T KOG0343|consen 387 VIQVDCPEDVDTYIHRVGRTARYKERGES 415 (758)
T ss_pred EEEecCchhHHHHHHHhhhhhcccCCCce
Confidence 99999999999999999999998665543
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.3e-58 Score=462.74 Aligned_cols=360 Identities=33% Similarity=0.518 Sum_probs=315.2
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc----CCceEEEEEcC
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD----NNVIQVVILVP 196 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil~P 196 (485)
+|+++++++.+++.+.+.||..|+++|.++|+.++.++|+++++|||+|||++|++|+++.+... ...+++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999887532 22458999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC
Q 011446 197 TRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS 276 (485)
Q Consensus 197 ~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~ 276 (485)
|++|+.|+.+.+..++...++.+..++|+.....+...+...++|+|+||++|++++......+.++++||+||||++++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999999999999999999998888777778899999999999999988777789999999999999999
Q ss_pred CCCHHHHHHHHHhCCCCCcEEEEecccch-HHHHHHHHhcCCCeEEeeccc-cccccceEEEEeeh-hhhhHHHHHHHHH
Q 011446 277 PEFQPSVEQLIRFLPANRQILMFSATFPV-TVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVE-ERQKVHCLNTLFS 353 (485)
Q Consensus 277 ~~~~~~~~~i~~~~~~~~~~i~~SATl~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~~l~~ 353 (485)
.+|...+..+...++...|++++|||++. .+..+...++.+|..+..... ....++.+++...+ ...+...+..++.
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999989999999999974 477788888888766654432 23345666666554 4667888888888
Q ss_pred hcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcC
Q 011446 354 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (485)
Q Consensus 354 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (485)
.....++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||+||
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 76778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhhccccCccccc------c-hHHHHHHHHHhhccccccCCCC
Q 011446 434 FPKNSETYLHRVCWIQLSFSLSLP------N-LQFMCSMLMYICFTDRLVDLEG 480 (485)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 480 (485)
+|.|...|+||+||+||.|..+.. . ...+..+++|+...++...+++
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~~~~~~ 375 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKARVIDE 375 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999876543 2 3345556667766655444443
No 18
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7.2e-58 Score=468.38 Aligned_cols=341 Identities=31% Similarity=0.487 Sum_probs=302.6
Q ss_pred cCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhc-------cCCc
Q 011446 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ-------DNNV 188 (485)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-------~~~~ 188 (485)
+.+..+|+++++++.+++.+.+.||..|+|+|.++||.++.|+|+++++|||||||++|++|++..+.. ...+
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 356678999999999999999999999999999999999999999999999999999999999987642 2245
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEe
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVM 268 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iVi 268 (485)
+++||++||++||.|+.+.++.+....++.+..++||.....+...+..+++|+|+||++|.+++.+....++++++||+
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lVi 276 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVL 276 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEe
Confidence 79999999999999999999999988888999999999888888888888999999999999999888888999999999
Q ss_pred eccccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecccc-ccccceEEEEeehhhhhHHH
Q 011446 269 DEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL-TLKGITQYYAFVEERQKVHC 347 (485)
Q Consensus 269 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 347 (485)
||||+|++.+|...+..++..++ +.|++++|||++..+..+...++.++..+...... ....+.+.+..+....+...
T Consensus 277 DEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~ 355 (518)
T PLN00206 277 DEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQK 355 (518)
T ss_pred ecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHH
Confidence 99999999999999999988884 68999999999999999999998888776654322 22345566666666666667
Q ss_pred HHHHHHhcC--CCcEEEEecChhHHHHHHHHHHH-cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 011446 348 LNTLFSKLQ--INQSIIFCNSVNRVELLAKKITE-LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (485)
Q Consensus 348 l~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (485)
+..++.... ..++||||+++..++.+++.|.. .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|
T Consensus 356 l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip 435 (518)
T PLN00206 356 LFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLL 435 (518)
T ss_pred HHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcc
Confidence 777776543 35899999999999999999975 589999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 425 AVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 425 ~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
++++||+||+|.+..+|+||+|||||.|.-|..
T Consensus 436 ~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~a 468 (518)
T PLN00206 436 RVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTA 468 (518)
T ss_pred cCCEEEEeCCCCCHHHHHHhccccccCCCCeEE
Confidence 999999999999999999999999999876554
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-58 Score=414.32 Aligned_cols=354 Identities=32% Similarity=0.476 Sum_probs=318.0
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
...|+.+++++.+.+.++++|+..|+|+|..+||.|++|+|+|-+|.||||||++|.+|+++.|.+.+.+..++|++||+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC----ccccCCcceEEeeccccc
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG----VCILKDCSMLVMDEADKL 274 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~----~~~l~~~~~iViDEah~~ 274 (485)
+||.|+.+.+..+++..++++.+++||.+.-.+...+...+|++++|||++.+++... ...+.++.++|+||||++
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrv 165 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRV 165 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhh
Confidence 9999999999999999999999999999998888999999999999999999988764 344788999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCC--eEEee-ccccccccceEEEEeehhhhhHHHHHHH
Q 011446 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKP--YVINL-MDELTLKGITQYYAFVEERQKVHCLNTL 351 (485)
Q Consensus 275 ~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l 351 (485)
++..|...+..+...+|..+|.++||||+...+..+.......+ +.... ......+.+.+.|..++...+...+..+
T Consensus 166 L~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~ 245 (442)
T KOG0340|consen 166 LAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHL 245 (442)
T ss_pred hccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHH
Confidence 99999999999999999999999999999887777666555543 22222 3445567788888888888888888888
Q ss_pred HHhcC---CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCE
Q 011446 352 FSKLQ---INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (485)
Q Consensus 352 ~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (485)
+.... .+.++||+++..+|+.|+..|..+++.+..+||.|++.+|-..+.+|+.+..+||||||++++|+|||.|+.
T Consensus 246 Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~L 325 (442)
T KOG0340|consen 246 LRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVEL 325 (442)
T ss_pred HhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeE
Confidence 87654 468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhcc
Q 011446 429 VINFDFPKNSETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFT 472 (485)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~ 472 (485)
|||+|+|.++.+|+||+||..|+|+.|..- ...+.+++..+...
T Consensus 326 VvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 326 VVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred EEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 999999999999999999998888888763 34555666666553
No 20
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-58 Score=424.15 Aligned_cols=340 Identities=31% Similarity=0.513 Sum_probs=306.1
Q ss_pred CCCccccc-CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhc------cCCceE
Q 011446 118 KGNEFEDY-FLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ------DNNVIQ 190 (485)
Q Consensus 118 ~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~------~~~~~~ 190 (485)
+.-.|++. .-.+++++.+++.||.+|+|+|+++||.++.|.|++.++.||+|||++|++|.+.++.. ...++.
T Consensus 217 P~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~ 296 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPG 296 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCc
Confidence 33445553 35789999999999999999999999999999999999999999999999999887753 235678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeec
Q 011446 191 VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDE 270 (485)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDE 270 (485)
+|+++||++|+.|+.-.++++. .-+....+++|+.+..++...+..+.+|+++||++|.++......++.++.++|+||
T Consensus 297 ~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDE 375 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDE 375 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecc
Confidence 9999999999999877666653 457888999999999999999999999999999999999998899999999999999
Q ss_pred cccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc--ccccccceEEEEeehhhhhHHHH
Q 011446 271 ADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD--ELTLKGITQYYAFVEERQKVHCL 348 (485)
Q Consensus 271 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 348 (485)
||+|++++|.+.+.+++..+++++|+++.|||||..+..++..|+.+|.++.+.. ......+.+.+....+..+...+
T Consensus 376 ADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~ 455 (629)
T KOG0336|consen 376 ADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIV 455 (629)
T ss_pred hhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876543 23345566777777788888888
Q ss_pred HHHHHhcCC-CcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCC
Q 011446 349 NTLFSKLQI-NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (485)
Q Consensus 349 ~~l~~~~~~-~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (485)
..+...+.. .++||||..+..++.|...|.-.|+..-.+||+-.+.+|+..++.|+.|+.+|||||+++++|+|++|++
T Consensus 456 ~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiT 535 (629)
T KOG0336|consen 456 QFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDIT 535 (629)
T ss_pred HHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcc
Confidence 888877654 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 428 VVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
||++||+|.+++.|+||+||.||+|+.|..-
T Consensus 536 HV~NyDFP~nIeeYVHRvGrtGRaGr~G~si 566 (629)
T KOG0336|consen 536 HVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI 566 (629)
T ss_pred eeeccCCCccHHHHHHHhcccccCCCCcceE
Confidence 9999999999999999999999998888663
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.6e-56 Score=454.73 Aligned_cols=339 Identities=31% Similarity=0.519 Sum_probs=302.8
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-------CceEE
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-------NVIQV 191 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-------~~~~~ 191 (485)
...|.++++++.+.++|.+.||..|+++|.++|+.+++|+|+|+.+|||||||++|++|++..+.... ..+++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 34688999999999999999999999999999999999999999999999999999999999886543 14689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeec
Q 011446 192 VILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDE 270 (485)
Q Consensus 192 lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDE 270 (485)
|||+||++|+.|+.+.++.+....++.+..++|+.+...+...+. ..++|+|+||++|+.++.++...++++++|||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 999999999999999999999888999999999988776666553 5689999999999999888888899999999999
Q ss_pred cccccCCCCHHHHHHHHHhCCC--CCcEEEEecccchHHHHHHHHhcCCCeEEeeccc-cccccceEEEEeehhhhhHHH
Q 011446 271 ADKLLSPEFQPSVEQLIRFLPA--NRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHC 347 (485)
Q Consensus 271 ah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 347 (485)
||++++.+|...+..++..++. +.|++++|||++.++..+...++.+|..+.+... .....+.+.+..+....+...
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~ 325 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKL 325 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHH
Confidence 9999999999999999988854 5799999999999999999999988877655432 223345556666666777788
Q ss_pred HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCC
Q 011446 348 LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (485)
Q Consensus 348 l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (485)
+..++......++||||++++.++.+++.|...++.+..+||++++++|.++++.|++|+.+|||||+++++||||++++
T Consensus 326 l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~ 405 (475)
T PRK01297 326 LYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS 405 (475)
T ss_pred HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCC
Confidence 88888877777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 428 VVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
+||++++|.|..+|+||+|||||.|.-+..
T Consensus 406 ~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~ 435 (475)
T PRK01297 406 HVINFTLPEDPDDYVHRIGRTGRAGASGVS 435 (475)
T ss_pred EEEEeCCCCCHHHHHHhhCccCCCCCCceE
Confidence 999999999999999999999999875533
No 22
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-57 Score=431.22 Aligned_cols=338 Identities=33% Similarity=0.533 Sum_probs=308.8
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC----------CceE
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN----------NVIQ 190 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----------~~~~ 190 (485)
.|.+-.+...+..++...++..|+|+|+.+||.+..|++++++|+||||||.+|++|++.++...+ ..+.
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 677777889999999999999999999999999999999999999999999999999999986543 2479
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeec
Q 011446 191 VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDE 270 (485)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDE 270 (485)
++|++|||+|+.|+++.++++.-...+.+...+|+.+...+......+++|+|||||+|.+++..+...|+++.++||||
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDE 234 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDE 234 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC-CCCHHHHHHHHHhCCC----CCcEEEEecccchHHHHHHHHhcCCCe-EEeec-cccccccceEEEEeehhhh
Q 011446 271 ADKLLS-PEFQPSVEQLIRFLPA----NRQILMFSATFPVTVKDFKDKYLQKPY-VINLM-DELTLKGITQYYAFVEERQ 343 (485)
Q Consensus 271 ah~~~~-~~~~~~~~~i~~~~~~----~~~~i~~SATl~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~ 343 (485)
||+|++ .+|.+.+..++..... ..|.++||||+|..+..++..++.+.+ .+.+. ......++.+...++.+..
T Consensus 235 ADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~ 314 (482)
T KOG0335|consen 235 ADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEME 314 (482)
T ss_pred hHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchh
Confidence 999999 9999999999887743 689999999999999998888887643 33222 3445678888999999988
Q ss_pred hHHHHHHHHHhcC----CC-----cEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEc
Q 011446 344 KVHCLNTLFSKLQ----IN-----QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT 414 (485)
Q Consensus 344 ~~~~l~~l~~~~~----~~-----~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT 414 (485)
|...|.+++.... .+ .++|||.+++.|..++..|...++++..+||..++.+|++.++.|+.|...|||||
T Consensus 315 kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT 394 (482)
T KOG0335|consen 315 KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVAT 394 (482)
T ss_pred hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEe
Confidence 8888888887543 33 79999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 415 DLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 415 ~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
++++||+|||+|+|||+||+|.+..+|+||+||+||.|+.|...
T Consensus 395 ~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~at 438 (482)
T KOG0335|consen 395 NVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRAT 438 (482)
T ss_pred hhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeE
Confidence 99999999999999999999999999999999999999888764
No 23
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6e-55 Score=437.94 Aligned_cols=338 Identities=40% Similarity=0.667 Sum_probs=302.7
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
...|+++++++.+.+++.+.||..|+|+|.++|+.+++++|+++++|||||||++|++|++..+.....+.++||++|++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 45799999999999999999999999999999999999999999999999999999999999887655567899999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (485)
+|+.|+.+.+..++...+..+....|+.....+...+..+++|+|+||++|.+++.+....++++++||+||||++++.+
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~ 186 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG 186 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc
Confidence 99999999999998888888888899988887777777888999999999999888777779999999999999999989
Q ss_pred CHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-ccccccceEEEEeehh-hhhHHHHHHHHHhcC
Q 011446 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEE-RQKVHCLNTLFSKLQ 356 (485)
Q Consensus 279 ~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~ 356 (485)
|...+..++..++++.|++++|||+|..+..+...++.+|..+.... .....++.+++..... ..+...+..++....
T Consensus 187 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (401)
T PTZ00424 187 FKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLT 266 (401)
T ss_pred hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988888887654433 3334555555555443 446667777777777
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (485)
..++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||++++|.
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~ 346 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA 346 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhhccccCcccc
Q 011446 437 NSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 437 s~~~~~Qr~GRagR~g~~~~ 456 (485)
|..+|+||+|||||.|+.|.
T Consensus 347 s~~~y~qr~GRagR~g~~G~ 366 (401)
T PTZ00424 347 SPENYIHRIGRSGRFGRKGV 366 (401)
T ss_pred CHHHEeecccccccCCCCce
Confidence 99999999999999887653
No 24
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.5e-58 Score=417.39 Aligned_cols=345 Identities=28% Similarity=0.486 Sum_probs=310.1
Q ss_pred ccccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhc--------
Q 011446 113 DVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ-------- 184 (485)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-------- 184 (485)
+-.+++..+|.++.++..+++.++++|+..|+|+|.+.+|.+++|+|.|..|-||||||++|.+|++....+
T Consensus 163 d~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~ 242 (610)
T KOG0341|consen 163 DDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFA 242 (610)
T ss_pred CCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccc
Confidence 456677889999999999999999999999999999999999999999999999999999999998765432
Q ss_pred cCCceEEEEEcCcHHHHHHHHHHHHHHhccC------CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCcc
Q 011446 185 DNNVIQVVILVPTRELALQTSQVCKELGKHL------NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC 258 (485)
Q Consensus 185 ~~~~~~~lil~P~~~la~q~~~~~~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~ 258 (485)
.+.++-.||+||+|+||.|.++.+..+...+ .++.....||.+..++......+.+|+|+|||+|.+++.+...
T Consensus 243 ~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~ 322 (610)
T KOG0341|consen 243 RGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIM 322 (610)
T ss_pred cCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhc
Confidence 3456789999999999999999887776543 2566778899999999999999999999999999999999999
Q ss_pred ccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecccc-ccccceEEEE
Q 011446 259 ILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL-TLKGITQYYA 337 (485)
Q Consensus 259 ~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 337 (485)
.|+-+.++++||||+|++.+|..+++.++.++...+|+++||||+|..+..|++.-+-.|..+++...- ..-+..+...
T Consensus 323 sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevE 402 (610)
T KOG0341|consen 323 SLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVE 402 (610)
T ss_pred cHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888776422 2223334445
Q ss_pred eehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 011446 338 FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 417 (485)
Q Consensus 338 ~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~ 417 (485)
++....|.-.+.+.+++.. .++||||..+.+++.++++|.-.|+.++.+||+-++++|...++.|+.|+.+|||||+++
T Consensus 403 yVkqEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVA 481 (610)
T KOG0341|consen 403 YVKQEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVA 481 (610)
T ss_pred HHHhhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecch
Confidence 5666777777777777644 579999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 418 TRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 418 ~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+.|+|+|++.||||||+|..+++|+||+||+||.|+.|...
T Consensus 482 SKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT 522 (610)
T KOG0341|consen 482 SKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT 522 (610)
T ss_pred hccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee
Confidence 99999999999999999999999999999999999999874
No 25
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-56 Score=422.26 Aligned_cols=343 Identities=30% Similarity=0.502 Sum_probs=279.9
Q ss_pred cccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhccC------
Q 011446 114 VTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDN------ 186 (485)
Q Consensus 114 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~------ 186 (485)
........|..++++.+++++|.+.||..|+++|..++|.+..+ .|++..|+||||||++|-+|++..+.+..
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 34445556999999999999999999999999999999999998 78999999999999999999999664321
Q ss_pred -----CceE--EEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCcc-
Q 011446 187 -----NVIQ--VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC- 258 (485)
Q Consensus 187 -----~~~~--~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~- 258 (485)
..++ +||++|||+||.|+.+.+..++...++.+..++||.....+.+.+...++|+|+|||+|+.++..+..
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 2234 99999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred --ccCCcceEEeeccccccCCCCHHHHHHHHHhCC-----CCCcEEEEecccch---------------------HHHHH
Q 011446 259 --ILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP-----ANRQILMFSATFPV---------------------TVKDF 310 (485)
Q Consensus 259 --~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SATl~~---------------------~~~~~ 310 (485)
.+++++++|+||+|||++.++...+..++..+. ..+|.+.+|||++- .+..+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 467889999999999999999988888887764 45799999999841 12223
Q ss_pred HHH--hcCCCeEEeeccc-cccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEE
Q 011446 311 KDK--YLQKPYVINLMDE-LTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 387 (485)
Q Consensus 311 ~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 387 (485)
+.. +...|.++.+... .....+......++...|.-.+..++.. .+|++|||||+++.+..|+-.|..+++...++
T Consensus 415 mk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~L 493 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPL 493 (731)
T ss_pred HHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEee-cCCceEEEechHHHHHHHHHHHhhcCCCCchh
Confidence 322 3345555544321 1111111111111111111111112222 45899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 388 HAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 388 h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
|+.|.+.+|-+-+++|++....||||||+|+||+|||+|.|||||..|.+.+.|+||.||+.|+++-|..
T Consensus 494 HA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvs 563 (731)
T KOG0347|consen 494 HASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVS 563 (731)
T ss_pred hHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeE
Confidence 9999999999999999999999999999999999999999999999999999999999999998776654
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-54 Score=410.26 Aligned_cols=341 Identities=29% Similarity=0.470 Sum_probs=294.2
Q ss_pred CCCCcccccCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhc------cCCce
Q 011446 117 TKGNEFEDYFLKRELLMGIFEK-GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ------DNNVI 189 (485)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~------~~~~~ 189 (485)
.....|..++|++.+...|... ++..|+.+|.++||.+++++|++|.++||||||++|++|+++.+.. +..|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 4556799999999999999765 9999999999999999999999999999999999999999998854 34567
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC-ccccCCcceEE
Q 011446 190 QVVILVPTRELALQTSQVCKELGKHLN-IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLV 267 (485)
Q Consensus 190 ~~lil~P~~~la~q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~-~~~l~~~~~iV 267 (485)
-+||++|||+||.|+++.+.++.+.+. +.-+.+.||.....+..+++.+++|+|+|||+|++++++- .+.++++.+||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 899999999999999999999988765 3347789999999999999999999999999999998874 55688899999
Q ss_pred eeccccccCCCCHHHHHHHHHhCC-------------CCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc--------
Q 011446 268 MDEADKLLSPEFQPSVEQLIRFLP-------------ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-------- 326 (485)
Q Consensus 268 iDEah~~~~~~~~~~~~~i~~~~~-------------~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-------- 326 (485)
+||+|++++.+|...+..|++.+. ...|.+++|||+...+..+...-+.+|..+.++..
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 999999999999999999988762 23578999999999999999999999987763211
Q ss_pred ------------------cccccceEEEEeehhhhhHHHHHHHH----HhcCCCcEEEEecChhHHHHHHHHHHH-----
Q 011446 327 ------------------LTLKGITQYYAFVEERQKVHCLNTLF----SKLQINQSIIFCNSVNRVELLAKKITE----- 379 (485)
Q Consensus 327 ------------------~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~~~~lVf~~~~~~~~~l~~~L~~----- 379 (485)
..++.+.+.|..++....+-.|..++ +.....++|||+.+.+.++.-++.|..
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 11233455666666665555444444 344666999999999999998888865
Q ss_pred -----------------cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHH
Q 011446 380 -----------------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYL 442 (485)
Q Consensus 380 -----------------~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~ 442 (485)
.+.++..+||+|.+++|..+|..|......||+|||+++||+|+|+|++||.||+|.+.++|+
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adyl 532 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYL 532 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHH
Confidence 245688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCccccc
Q 011446 443 HRVCWIQLSFSLSLP 457 (485)
Q Consensus 443 Qr~GRagR~g~~~~~ 457 (485)
||+||+.|.|+.|..
T Consensus 533 HRvGRTARaG~kG~a 547 (708)
T KOG0348|consen 533 HRVGRTARAGEKGEA 547 (708)
T ss_pred HHhhhhhhccCCCce
Confidence 999999999998865
No 27
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-54 Score=404.68 Aligned_cols=345 Identities=30% Similarity=0.467 Sum_probs=315.0
Q ss_pred cccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhc-----cCCc
Q 011446 114 VTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ-----DNNV 188 (485)
Q Consensus 114 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-----~~~~ 188 (485)
....+...|+.++++..|+.++.+..|.+|+|+|.+++|..+.+++++-.|-||||||.+|+.|++.++.. .+.+
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~g 296 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEG 296 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCC
Confidence 45667778999999999999999999999999999999999999999999999999999999999988743 3577
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEe
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVM 268 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iVi 268 (485)
+..||+|||++||.|++.+++++++..++++++++||.+..++...+..++.|+||||++|++++..+..++.+++++||
T Consensus 297 Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 297 PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-ccccccceEEEEeehh-hhhHH
Q 011446 269 DEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEE-RQKVH 346 (485)
Q Consensus 269 DEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 346 (485)
|||++|.+.+|.+.++.|...+++++|+|+||||++..++.+++.++.+|..+.... ......+++.+..+.. ..|+.
T Consensus 377 DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~ 456 (731)
T KOG0339|consen 377 DEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLN 456 (731)
T ss_pred echhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHH
Confidence 999999999999999999999999999999999999999999999999997765542 2233456666665543 44554
Q ss_pred -HHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 011446 347 -CLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA 425 (485)
Q Consensus 347 -~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~ 425 (485)
++..|......+++|||+.-...++.++..|+-.++++..+||+|.+.+|.+++..|+.+...|||+|+++++|+||++
T Consensus 457 wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ 536 (731)
T KOG0339|consen 457 WLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPS 536 (731)
T ss_pred HHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccc
Confidence 4444555557789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 426 VNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 426 v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+..||+||+-.+++.|.||+||.||.|..|-.+
T Consensus 537 ikTVvnyD~ardIdththrigrtgRag~kGvay 569 (731)
T KOG0339|consen 537 IKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAY 569 (731)
T ss_pred cceeecccccchhHHHHHHhhhcccccccceee
Confidence 999999999999999999999999998887765
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-54 Score=399.96 Aligned_cols=338 Identities=32% Similarity=0.495 Sum_probs=305.0
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc------CCceEEEE
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD------NNVIQVVI 193 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~------~~~~~~li 193 (485)
..|++++|++.+++++.+.|+.+|+-+|+.+||.+++|+|++..|.||||||.+|++|+++.+... ..++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 579999999999999999999999999999999999999999999999999999999999998643 34578999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCC--ceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCc-cccCCcceEEeec
Q 011446 194 LVPTRELALQTSQVCKELGKHLN--IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV-CILKDCSMLVMDE 270 (485)
Q Consensus 194 l~P~~~la~q~~~~~~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~-~~l~~~~~iViDE 270 (485)
++||++|+.|++.++.++...++ +++.-+..+.+.......+...++|+|+||+.++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999887765 44444555555555667888899999999999999998876 6688899999999
Q ss_pred cccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecccc--ccccceEEEEeehhhhhHHHH
Q 011446 271 ADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL--TLKGITQYYAFVEERQKVHCL 348 (485)
Q Consensus 271 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l 348 (485)
||.++..+|...+..+...+|+..|.++||||+..++..+...++.+|.+..+.+.. ....+.+++..+.+.+|..++
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 999999999999999999999999999999999999999999999999988776433 346788899999999999888
Q ss_pred HHHHHh-cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc------------
Q 011446 349 NTLFSK-LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD------------ 415 (485)
Q Consensus 349 ~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~------------ 415 (485)
..+++- .-.+++|||+|+++.|..+.-.|.+.|++.+.++|.|+...|--|+++|..|-+++|||||
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 888764 4568999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------ccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 416 -----------------------LFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 416 -----------------------~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
-.+||||+..|..|+|||+|.+..+|+||+||++|+|+.|..
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta 403 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA 403 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCce
Confidence 146899999999999999999999999999999999887765
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-54 Score=390.48 Aligned_cols=343 Identities=35% Similarity=0.564 Sum_probs=309.1
Q ss_pred ccccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceE
Q 011446 113 DVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQ 190 (485)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~ 190 (485)
+.+.....+|+++.|.+++++.++.++|..|+.+|..++|.++.. +++|..+..|+|||.||.+.+|.++...-..+.
T Consensus 83 nsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ 162 (477)
T KOG0332|consen 83 NSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQ 162 (477)
T ss_pred CCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCC
Confidence 445556678999999999999999999999999999999999987 679999999999999999999999988777789
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc-CccccCCcceEEee
Q 011446 191 VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMD 269 (485)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~-~~~~l~~~~~iViD 269 (485)
++|++|+++||.|+.+++.++++..++.......+....+- -.-..+|+|+||+.+++++.+ ....+..+.++|+|
T Consensus 163 ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlD 239 (477)
T KOG0332|consen 163 CICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLD 239 (477)
T ss_pred ceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEEEec
Confidence 99999999999999999999999998888777766522211 011357999999999998887 56678899999999
Q ss_pred ccccccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeec-cccccccceEEEEeeh-hhhhHH
Q 011446 270 EADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVE-ERQKVH 346 (485)
Q Consensus 270 Eah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 346 (485)
||+.|++ .+|+..-..+...++++.|++++|||....+..|+.+.+.+++.+.+. ++....++.++|..+. ...|+.
T Consensus 240 EAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~ 319 (477)
T KOG0332|consen 240 EADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQ 319 (477)
T ss_pred chhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHH
Confidence 9998876 579999999999999999999999999999999999999999988776 4667788888888776 467889
Q ss_pred HHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCC
Q 011446 347 CLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV 426 (485)
Q Consensus 347 ~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v 426 (485)
.+..++....-++.||||.+++.+..++..|.+.|..+..+||+|.-++|..+++.|+.|..+|||+|++++||||++.|
T Consensus 320 ~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qV 399 (477)
T KOG0332|consen 320 ALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQV 399 (477)
T ss_pred HHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceE
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC------ChHHHHHHhhhccccCcccccc
Q 011446 427 NVVINFDFPK------NSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 427 ~~VI~~~~p~------s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
..||+||+|. +.++|+||+||+||+|+.|..-
T Consensus 400 s~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~ 437 (477)
T KOG0332|consen 400 SVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAI 437 (477)
T ss_pred EEEEecCCccccCCCCCHHHHHHHhcccccccccceEE
Confidence 9999999996 6899999999999999999874
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=8.9e-51 Score=428.50 Aligned_cols=323 Identities=18% Similarity=0.248 Sum_probs=259.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHH
Q 011446 127 LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ 206 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~ 206 (485)
+++.+.+.|.+.||..|+++|.++|+.+++|+|+++.+|||||||++|++|+++.+... .+.++||++||++|+.|+.+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQLR 99 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999998764 34699999999999999999
Q ss_pred HHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhh----cCccccCCcceEEeeccccccCCCCHHH
Q 011446 207 VCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSK----KGVCILKDCSMLVMDEADKLLSPEFQPS 282 (485)
Q Consensus 207 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~----~~~~~l~~~~~iViDEah~~~~~~~~~~ 282 (485)
.++++. ..++++..+.|+.... +...+...++|+|+||++|...+. ++...++++++|||||||++.+ .|...
T Consensus 100 ~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~ 176 (742)
T TIGR03817 100 AVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSH 176 (742)
T ss_pred HHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHH
Confidence 999987 4567888888887744 445556778999999999875322 1233478999999999999865 46666
Q ss_pred HHHHHHh-------CCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeeh---------------
Q 011446 283 VEQLIRF-------LPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE--------------- 340 (485)
Q Consensus 283 ~~~i~~~-------~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 340 (485)
+..++.. .+.++|++++|||++... ++...++..|..+ +...........+.....
T Consensus 177 ~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~ 254 (742)
T TIGR03817 177 VALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGENGAPVRR 254 (742)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEE-ECCCCCCcCceEEEEecCCcccccccccccccc
Confidence 5544433 456789999999998654 4666777766443 222211111111211111
Q ss_pred --hhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc--------CCeEEEEcCCCCHHHHHHHHHHHhcCCccE
Q 011446 341 --ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--------GYSCFYIHAKMLQDHRNRVFHDFRNGACRN 410 (485)
Q Consensus 341 --~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~r~~i~~~f~~g~~~v 410 (485)
...+...+..++.. ..++||||+|++.++.++..|.+. +..+..+||++++++|.++++.|++|+.++
T Consensus 255 ~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~v 332 (742)
T TIGR03817 255 SASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLG 332 (742)
T ss_pred chHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceE
Confidence 11344455555553 469999999999999999998764 567889999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 411 LVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 411 lvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
||||+++++||||+++++||++++|.+.++|+||+|||||.|+.+..
T Consensus 333 LVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~a 379 (742)
T TIGR03817 333 VATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALV 379 (742)
T ss_pred EEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEE
Confidence 99999999999999999999999999999999999999999876654
No 31
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.4e-52 Score=401.22 Aligned_cols=361 Identities=33% Similarity=0.543 Sum_probs=326.2
Q ss_pred ccccccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceE
Q 011446 111 TEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQ 190 (485)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~ 190 (485)
..++.......|+.+.|..+++..|+..+|..|+++|..|||+++.+-|+||.+..|+|||++|.+.+++.+......++
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q 95 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQ 95 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcce
Confidence 34555566678999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEee
Q 011446 191 VVILVPTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMD 269 (485)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViD 269 (485)
++|++|||++|.|+.+.+..++..+ |.++.+++||+....+...+ +.++|+|+|||++..++..+.++.++++++|+|
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLD 174 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLD 174 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccceeEEEec
Confidence 9999999999999999999998754 78999999999998887776 567899999999999999999999999999999
Q ss_pred ccccccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc-cccccceEEEEeehh------
Q 011446 270 EADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVEE------ 341 (485)
Q Consensus 270 Eah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------ 341 (485)
|||.+.+ ..|...+..|+..+|..+|++.+|||.|..+.+.+.+++.+|.++..... ...-++.+|+.....
T Consensus 175 EADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsve 254 (980)
T KOG4284|consen 175 EADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVE 254 (980)
T ss_pred cHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHH
Confidence 9998888 67999999999999999999999999999999999999999998877643 344677777766543
Q ss_pred --hhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 011446 342 --RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTR 419 (485)
Q Consensus 342 --~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~ 419 (485)
..|...|..+++..+..+.||||+....|+-++..|...|+.+.++.|.|++.+|..+++.++.-.++|||+|+..+|
T Consensus 255 emrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaR 334 (980)
T KOG4284|consen 255 EMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTAR 334 (980)
T ss_pred HHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhc
Confidence 347788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc--------hHHHHHHHHHhhcc
Q 011446 420 GIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN--------LQFMCSMLMYICFT 472 (485)
Q Consensus 420 Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~--------~~~~~~~~~~~~~~ 472 (485)
|||-++|++||+.|+|.+.++|.||||||||+|..|... .+.|-++...+...
T Consensus 335 GIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m~~ria~~ 395 (980)
T KOG4284|consen 335 GIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAMAYRIAVT 395 (980)
T ss_pred cCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHHHHHHhhh
Confidence 999999999999999999999999999999999999873 24454554444443
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.2e-50 Score=422.57 Aligned_cols=326 Identities=20% Similarity=0.236 Sum_probs=256.1
Q ss_pred Ccccc--cCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcC
Q 011446 120 NEFED--YFLKRELLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (485)
Q Consensus 120 ~~~~~--~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (485)
..|.. ++....+...++. .|+..|+|+|.++|+.++.|+|+|+++|||+|||+||++|++.. .+.+|||+|
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISP 508 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 508 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeC
Confidence 34553 4455556555554 48999999999999999999999999999999999999999864 237899999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc------CCCeEEEEcchHHHH--hhhcC---ccccCCcce
Q 011446 197 TRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY------QPVHLLVGTPGRILD--LSKKG---VCILKDCSM 265 (485)
Q Consensus 197 ~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~~Ili~Tp~~l~~--~~~~~---~~~l~~~~~ 265 (485)
+++|+.++...+.. .++.+..+.++....++...+. ...+|+|+||++|.. .+.+. ......+++
T Consensus 509 LiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Lsl 584 (1195)
T PLN03137 509 LVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 584 (1195)
T ss_pred HHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccce
Confidence 99999765554443 3688888888887665544332 468999999999853 11111 111345889
Q ss_pred EEeeccccccCCC--CHHHHHHH--HHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehh
Q 011446 266 LVMDEADKLLSPE--FQPSVEQL--IRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEE 341 (485)
Q Consensus 266 iViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (485)
|||||||++++++ |++.+..+ +....++.+++++|||++..+.+.+...+.....+........+++ ++.....
T Consensus 585 IVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL--~y~Vv~k 662 (1195)
T PLN03137 585 FVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNL--WYSVVPK 662 (1195)
T ss_pred eccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccce--EEEEecc
Confidence 9999999999865 88988875 4445567889999999999988877776655444444455555555 3333333
Q ss_pred hh-hHHHHHHHHHh-cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 011446 342 RQ-KVHCLNTLFSK-LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTR 419 (485)
Q Consensus 342 ~~-~~~~l~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~ 419 (485)
.. ....+..++.. ......||||.+++.|+.+++.|...|+.+.+|||+|++++|..+++.|..|+.+|||||+++++
T Consensus 663 ~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 663 TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 22 23445555543 33568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 420 GIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 420 Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
|||+|+|++||||++|.|++.|+||+|||||.|.-+..
T Consensus 743 GIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~c 780 (1195)
T PLN03137 743 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSC 780 (1195)
T ss_pred CCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceE
Confidence 99999999999999999999999999999999865443
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-51 Score=376.56 Aligned_cols=336 Identities=39% Similarity=0.684 Sum_probs=314.2
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
+|+|++|+++|++.++..||++|+.+|+.||..+..|.|+++.+.+|+|||.+|.+++++.+........++++.|+++|
T Consensus 27 sfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreL 106 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTREL 106 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998877677799999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh-cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC
Q 011446 201 ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL-YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (485)
Q Consensus 201 a~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (485)
|.|+..+...++...+..+....|+.+...+...+ ...++|+++||+++.+++....+....+++.|+|||+.++..+|
T Consensus 107 a~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gf 186 (397)
T KOG0327|consen 107 AQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGF 186 (397)
T ss_pred HHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccch
Confidence 99999999999999999999999999888555444 44689999999999999998877788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeec-cccccccceEEEEeehhhhhHHHHHHHHHhcCCC
Q 011446 280 QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVEERQKVHCLNTLFSKLQIN 358 (485)
Q Consensus 280 ~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 358 (485)
...+..++..++++.|++++|||.|.++....+++..+|..+... .+.+.+.+.+++..+....|...+..++. ...
T Consensus 187 kdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~ 264 (397)
T KOG0327|consen 187 KDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVT 264 (397)
T ss_pred HHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH--hhh
Confidence 999999999999999999999999999999999999999877654 45667888999999988889999999998 667
Q ss_pred cEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCCh
Q 011446 359 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNS 438 (485)
Q Consensus 359 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~ 438 (485)
..+||||++..+..+.+.|...++.+..+|+.|.+.+|+.+++.|+.|..+|||.|+.+++|+|+..+..||+|++|...
T Consensus 265 q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~ 344 (397)
T KOG0327|consen 265 QAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARK 344 (397)
T ss_pred cceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccCcccccc
Q 011446 439 ETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 439 ~~~~Qr~GRagR~g~~~~~~ 458 (485)
++|+||+||+||.|+.+..-
T Consensus 345 ~~yihR~gr~gr~grkg~~i 364 (397)
T KOG0327|consen 345 ENYIHRIGRAGRFGRKGVAI 364 (397)
T ss_pred hhhhhhcccccccCCCceee
Confidence 99999999999999888774
No 34
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-50 Score=411.86 Aligned_cols=343 Identities=31% Similarity=0.543 Sum_probs=311.0
Q ss_pred cCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhc-----cCCceE
Q 011446 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ-----DNNVIQ 190 (485)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-----~~~~~~ 190 (485)
..+...|...++...++..+++.||..++++|.+|||+|.+|+|||.+|.||||||++|++|++.+... .+.++-
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 345667999999999999999999999999999999999999999999999999999999999977643 346789
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC---ccccCCcceEE
Q 011446 191 VVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG---VCILKDCSMLV 267 (485)
Q Consensus 191 ~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~---~~~l~~~~~iV 267 (485)
+||++||++|+.|+.++++.+.+.+++.+++.+|+.....++..+..++.|+|||||++++++-.. ...+.++.++|
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 999999999999999999999999999999999999999999999999999999999999977654 34456667999
Q ss_pred eeccccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecccc-ccccceEEEEeeh-hhhhH
Q 011446 268 MDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL-TLKGITQYYAFVE-ERQKV 345 (485)
Q Consensus 268 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~ 345 (485)
+||||+|.+.+|.+.+..|+..+++++|++++|||+|..+..++...+..|..+.+.... .-..+.+.+..+. +..|+
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 999999999999999999999999999999999999999999999999988776655433 3356666777766 77787
Q ss_pred HHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 011446 346 HCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (485)
Q Consensus 346 ~~l~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (485)
..|..++... ..+++||||...+.|..+.+.|.+.++.+..+||+.++.+|..+++.|++|.+.+||||+++++|+|++
T Consensus 601 ~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 601 LKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccc
Confidence 7777777654 567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 425 AVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 425 ~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
++..||||++|...+.|+||+||+||+|+.+...
T Consensus 681 ~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~Av 714 (997)
T KOG0334|consen 681 ELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAV 714 (997)
T ss_pred cceEEEEcccchhHHHHHHHhcccccCCccceeE
Confidence 9999999999999999999999999999999664
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5e-49 Score=399.66 Aligned_cols=307 Identities=21% Similarity=0.246 Sum_probs=240.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. +..+||++|+++|+.|+...+..+ ++
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~----gi 76 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS----GI 76 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----CC
Confidence 48999999999999999999999999999999999999999853 237899999999999888877654 56
Q ss_pred eEEEEECCCChHHHHH----HhcCCCeEEEEcchHHHHhhh-cCcc-ccCCcceEEeeccccccCCC--CHHHHHHH--H
Q 011446 218 QVMVTTGGTSLKDDIM----RLYQPVHLLVGTPGRILDLSK-KGVC-ILKDCSMLVMDEADKLLSPE--FQPSVEQL--I 287 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~----~~~~~~~Ili~Tp~~l~~~~~-~~~~-~l~~~~~iViDEah~~~~~~--~~~~~~~i--~ 287 (485)
.+..+.++....+... ......+|+|+||+++..... .... ...++++|||||||++++++ |++.+..+ +
T Consensus 77 ~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 77 PATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 7777777766543221 123468999999998754210 0011 36789999999999998754 78877665 3
Q ss_pred HhCCCCCcEEEEecccchHHHHHHHHhcC--CCeEEeeccccccccceEEEEeehhhhhHHHHHHHHH-hcCCCcEEEEe
Q 011446 288 RFLPANRQILMFSATFPVTVKDFKDKYLQ--KPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS-KLQINQSIIFC 364 (485)
Q Consensus 288 ~~~~~~~~~i~~SATl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~lVf~ 364 (485)
....++.+++++|||++..+...+...+. .|..+ ......+++...... ........+..++. ......+||||
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~--~~s~~r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~ 233 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIF--CTSFDRPNLYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYC 233 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEE--eCCCCCCCcEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEE
Confidence 33446788999999999887776666543 33332 233344444322211 11123344455554 44445679999
Q ss_pred cChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHH
Q 011446 365 NSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHR 444 (485)
Q Consensus 365 ~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr 444 (485)
++++.++.+++.|...++.+..+||+|++++|..+++.|.+|..+|||||+++++|||+|+|++|||+++|.|.+.|+||
T Consensus 234 ~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr 313 (470)
T TIGR00614 234 PSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQE 313 (470)
T ss_pred CcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCccccc
Q 011446 445 VCWIQLSFSLSLP 457 (485)
Q Consensus 445 ~GRagR~g~~~~~ 457 (485)
+|||||.|..+..
T Consensus 314 ~GRaGR~G~~~~~ 326 (470)
T TIGR00614 314 SGRAGRDGLPSEC 326 (470)
T ss_pred hcCcCCCCCCceE
Confidence 9999999876544
No 36
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-50 Score=373.47 Aligned_cols=340 Identities=32% Similarity=0.519 Sum_probs=314.9
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCc
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPT 197 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~ 197 (485)
...|+.++|+..+++++.+.||..|+|+|++.||.++++++++..+-||||||.||++|+++.+.... .+.++++++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 46799999999999999999999999999999999999999999999999999999999999987543 45699999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC
Q 011446 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (485)
++|+.|...+.++++...+++..+++|+....++...+..+++||++||++++.+...-.+.|+.+.+||+|||+++..+
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999989999999999999877776778999999999999999999
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccc-cccceEEEEeehhhhhHHHHHHHHHhcC
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELT-LKGITQYYAFVEERQKVHCLNTLFSKLQ 356 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 356 (485)
+|.+.+.+++..++.+.|+++||||+|..+-++.+.-+.+|..+.+..+.. .+.+...+..+....|...|..++....
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~ 259 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRI 259 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999998888664433 3456667777888888888888887654
Q ss_pred -CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCC
Q 011446 357 -INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP 435 (485)
Q Consensus 357 -~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p 435 (485)
..+++|||.+..+++.+...|...|+.+..++|.|++..|..-+..|..++..+||.|+++++|+|||..+.||+||+|
T Consensus 260 ~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p 339 (529)
T KOG0337|consen 260 KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFP 339 (529)
T ss_pred cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCC
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhhccccCcccccc
Q 011446 436 KNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 436 ~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
.+...|.||+||+.|+|+.++++
T Consensus 340 ~~~klFvhRVgr~aragrtg~aY 362 (529)
T KOG0337|consen 340 PDDKLFVHRVGRVARAGRTGRAY 362 (529)
T ss_pred CCCceEEEEecchhhccccceEE
Confidence 99999999999999999888775
No 37
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-49 Score=372.87 Aligned_cols=339 Identities=27% Similarity=0.398 Sum_probs=283.7
Q ss_pred CcccccCCCHHH----------HHHHHHcCCCCCcHHHHHHHHHHhc---------CCCEEEEccCCCchhHHhHHHHHh
Q 011446 120 NEFEDYFLKREL----------LMGIFEKGFERPSPIQEESIPIALT---------GSDILARAKNGTGKTAAFCIPALE 180 (485)
Q Consensus 120 ~~~~~~~l~~~l----------~~~l~~~~~~~~~~~Q~~~i~~i~~---------~~~~ii~~~TGsGKT~~~~~~~l~ 180 (485)
..|+.++++... .+.+.++++...+|+|..++|+++. .+|+.|.||||||||++|.+|+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 345555555544 4458899999999999999999963 479999999999999999999999
Q ss_pred hhhccC-CceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCC-----CeEEEEcchHHHHhhh
Q 011446 181 KIDQDN-NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP-----VHLLVGTPGRILDLSK 254 (485)
Q Consensus 181 ~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-----~~Ili~Tp~~l~~~~~ 254 (485)
.+..+. +..++|||+|+++|+.|++.++.+++...|+.|+.+.|..+...+...+... .+|+|+|||+|.+++.
T Consensus 207 ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 207 LLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred HHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 998764 3469999999999999999999999999999999999999888877777542 3899999999999998
Q ss_pred c-CccccCCcceEEeeccccccCCCCHHHHHHHHHhC----------------------------------CCCCcEEEE
Q 011446 255 K-GVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL----------------------------------PANRQILMF 299 (485)
Q Consensus 255 ~-~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~----------------------------------~~~~~~i~~ 299 (485)
+ ..+.|+++.++|||||||+++..|...+-.+...+ .++...+.+
T Consensus 287 ~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~ 366 (620)
T KOG0350|consen 287 NTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVF 366 (620)
T ss_pred CCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhc
Confidence 4 56779999999999999998765554444333222 123346889
Q ss_pred ecccchHHHHHHHHhcCCCeEEeecc-----ccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHH
Q 011446 300 SATFPVTVKDFKDKYLQKPYVINLMD-----ELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLA 374 (485)
Q Consensus 300 SATl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~ 374 (485)
|||+..+...+...-+..|....+.. -..+..+.++....+...+.-.+..++......++|+|+++.+.+.+++
T Consensus 367 satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~ 446 (620)
T KOG0350|consen 367 SATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLA 446 (620)
T ss_pred chhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHH
Confidence 99998888888888888885544331 2223456666666777788888889999888899999999999999999
Q ss_pred HHHH----HcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccc
Q 011446 375 KKIT----ELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQL 450 (485)
Q Consensus 375 ~~L~----~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR 450 (485)
..|+ +..+++-.+.|.++...|.+.++.|..|++.||||||+++||||+.+|+.||+||+|.+..+|+||+||++|
T Consensus 447 ~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTAR 526 (620)
T KOG0350|consen 447 HVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTAR 526 (620)
T ss_pred HHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccccc
Confidence 9887 335677779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccc
Q 011446 451 SFSLSLPN 458 (485)
Q Consensus 451 ~g~~~~~~ 458 (485)
+|+.|...
T Consensus 527 Agq~G~a~ 534 (620)
T KOG0350|consen 527 AGQDGYAI 534 (620)
T ss_pred ccCCceEE
Confidence 99998874
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.8e-48 Score=401.18 Aligned_cols=312 Identities=22% Similarity=0.245 Sum_probs=244.9
Q ss_pred HHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHH
Q 011446 132 LMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 132 ~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
.+.|++ .||..|+|+|.++++.+++++|+++++|||+|||+||++|++.. ...+||++|+++|+.|+.+.+..
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~ 87 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLA 87 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHH
Confidence 334443 49999999999999999999999999999999999999999854 12689999999999998887776
Q ss_pred HhccCCceEEEEECCCChHHHHHH----hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC--CCHHHHH
Q 011446 211 LGKHLNIQVMVTTGGTSLKDDIMR----LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP--EFQPSVE 284 (485)
Q Consensus 211 ~~~~~~~~v~~~~g~~~~~~~~~~----~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~--~~~~~~~ 284 (485)
. ++.+..+.++......... .....+++|+||+++........+...++++|||||||+++++ +|++.+.
T Consensus 88 ~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~ 163 (607)
T PRK11057 88 N----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYA 163 (607)
T ss_pred c----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHH
Confidence 4 5667677666655443221 2345789999999987421111233457899999999999875 4787776
Q ss_pred HH--HHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEE
Q 011446 285 QL--IRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSII 362 (485)
Q Consensus 285 ~i--~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lV 362 (485)
.+ +....++.+++++|||++......+...+..............+++ .+...........+..++......++||
T Consensus 164 ~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~II 241 (607)
T PRK11057 164 ALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGII 241 (607)
T ss_pred HHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcc--eeeeeeccchHHHHHHHHHhcCCCCEEE
Confidence 55 3333467889999999998776655554432222222233334444 2333334444555666666667789999
Q ss_pred EecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHH
Q 011446 363 FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYL 442 (485)
Q Consensus 363 f~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~ 442 (485)
||+++++|+.+++.|.+.++.+..+||+|++++|..+++.|..|..+|||||+++++|||+|+|++|||+++|.|.++|+
T Consensus 242 Fc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~ 321 (607)
T PRK11057 242 YCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYY 321 (607)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCccc
Q 011446 443 HRVCWIQLSFSLS 455 (485)
Q Consensus 443 Qr~GRagR~g~~~ 455 (485)
||+|||||.|.-+
T Consensus 322 Qr~GRaGR~G~~~ 334 (607)
T PRK11057 322 QETGRAGRDGLPA 334 (607)
T ss_pred HHhhhccCCCCCc
Confidence 9999999998643
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.4e-47 Score=396.42 Aligned_cols=306 Identities=22% Similarity=0.264 Sum_probs=247.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.||..|+|+|.++|+.+++++|+++++|||+|||+||++|++.. ...++|++|+++|+.|+...++.+ ++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~----gi 78 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA----GV 78 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc----CC
Confidence 58999999999999999999999999999999999999999853 226899999999999988887764 57
Q ss_pred eEEEEECCCChHHHHH----HhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC--CCHHHHHHHHHh--
Q 011446 218 QVMVTTGGTSLKDDIM----RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP--EFQPSVEQLIRF-- 289 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~----~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~--~~~~~~~~i~~~-- 289 (485)
.+..+.++.+..+... ......+|+|+||+++............++++|||||||+++++ +|++.+..+...
T Consensus 79 ~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~ 158 (591)
T TIGR01389 79 AAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE 158 (591)
T ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH
Confidence 7778888776554332 22357899999999986432222334568999999999999874 588888776432
Q ss_pred CCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhH
Q 011446 290 LPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNR 369 (485)
Q Consensus 290 ~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~ 369 (485)
.-++.+++++|||++..+...+...+..+...........+++ .+.......+...+..++......++||||++++.
T Consensus 159 ~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~ 236 (591)
T TIGR01389 159 RFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKK 236 (591)
T ss_pred hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHH
Confidence 2235569999999998888777776653322222333444444 33333444556667777777667799999999999
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcc
Q 011446 370 VELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQ 449 (485)
Q Consensus 370 ~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRag 449 (485)
++.+++.|...++.+..+||+|+.++|..+++.|..|..+|||||+++++|||+|+|++|||+++|.|.++|+||+||||
T Consensus 237 ~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaG 316 (591)
T TIGR01389 237 VEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAG 316 (591)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccc
Q 011446 450 LSFSLS 455 (485)
Q Consensus 450 R~g~~~ 455 (485)
|.|.-+
T Consensus 317 R~G~~~ 322 (591)
T TIGR01389 317 RDGLPA 322 (591)
T ss_pred CCCCCc
Confidence 988643
No 40
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-46 Score=373.28 Aligned_cols=308 Identities=23% Similarity=0.248 Sum_probs=248.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
||..+++-|.++|..+++++|+++..|||+|||+||++|++-. .| -+|||+|..+|..++.+.++.. |+.
T Consensus 14 Gy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~G-~TLVVSPLiSLM~DQV~~l~~~----Gi~ 83 (590)
T COG0514 14 GYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----EG-LTLVVSPLISLMKDQVDQLEAA----GIR 83 (590)
T ss_pred CccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----CC-CEEEECchHHHHHHHHHHHHHc----Cce
Confidence 8999999999999999999999999999999999999999865 12 7899999999999888888776 466
Q ss_pred EEEEECCCChHHHHHH----hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC--CHHHHHHHHHh--C
Q 011446 219 VMVTTGGTSLKDDIMR----LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE--FQPSVEQLIRF--L 290 (485)
Q Consensus 219 v~~~~g~~~~~~~~~~----~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~--~~~~~~~i~~~--~ 290 (485)
+..+.+..+..+.... .....+++|-+|++|..-.....+.-..+.++|||||||+++++ |++.|..+-.. .
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~ 163 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG 163 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhh
Confidence 6666666554443322 23458999999999865322222224468899999999999874 99999988433 2
Q ss_pred CCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeeh-hhhhHHHHHHHHHhcCCCcEEEEecChhH
Q 011446 291 PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNR 369 (485)
Q Consensus 291 ~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~lVf~~~~~~ 369 (485)
-++..++++|||.++.+...+...+.......+...+..+|+........ ...+...+.. ......+..||||.|++.
T Consensus 164 ~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~ 242 (590)
T COG0514 164 LPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKK 242 (590)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHh
Confidence 34789999999999999998888777665555566677777742222211 2222222222 124455679999999999
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcc
Q 011446 370 VELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQ 449 (485)
Q Consensus 370 ~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRag 449 (485)
++.+++.|...|+.+..||++|+.++|..+.++|.+++.+|+|||.++++|||.|||++||||++|.|+++|+|.+||||
T Consensus 243 ~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAG 322 (590)
T COG0514 243 VEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAG 322 (590)
T ss_pred HHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccc
Q 011446 450 LSFSLSLP 457 (485)
Q Consensus 450 R~g~~~~~ 457 (485)
|+|.-...
T Consensus 323 RDG~~a~a 330 (590)
T COG0514 323 RDGLPAEA 330 (590)
T ss_pred CCCCcceE
Confidence 99875443
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.4e-46 Score=395.93 Aligned_cols=322 Identities=20% Similarity=0.289 Sum_probs=251.6
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
.|++++|++.+.+.+.+.||..|+|+|.++++. +..++++++++|||||||++|.+|++..+.. +.++||++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 578899999999999999999999999999998 7789999999999999999999999998863 348999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC
Q 011446 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (485)
Q Consensus 200 la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (485)
|+.|+++.++++. ..++++..++|+...... .....+|+||||+++..++.+....+.++++||+||+|.+.+.++
T Consensus 79 La~q~~~~~~~~~-~~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFE-ELGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhh-cCCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 9999999998765 358899999998765432 224679999999999998887666688999999999999988888
Q ss_pred HHHHHHHHHhC---CCCCcEEEEecccchHHHHHHHHhcCCCeEE--------e--ec--cccccccceEEEEeehhhhh
Q 011446 280 QPSVEQLIRFL---PANRQILMFSATFPVTVKDFKDKYLQKPYVI--------N--LM--DELTLKGITQYYAFVEERQK 344 (485)
Q Consensus 280 ~~~~~~i~~~~---~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~--------~--~~--~~~~~~~~~~~~~~~~~~~~ 344 (485)
+..++.++..+ .++.|+|++|||++. ..++.. ++....+. . +. ....................
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~ 232 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDT 232 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHH-HhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHH
Confidence 88888776544 578899999999974 333333 33221110 0 00 00000000000000001122
Q ss_pred HHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc------------------------------------CCeEEEEc
Q 011446 345 VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL------------------------------------GYSCFYIH 388 (485)
Q Consensus 345 ~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------------------~~~~~~~h 388 (485)
...+...+. ..+++||||++++.|+.++..|... ...+.++|
T Consensus 233 ~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hH 310 (737)
T PRK02362 233 LNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHH 310 (737)
T ss_pred HHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeec
Confidence 223333322 4579999999999999998888643 13688999
Q ss_pred CCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE----cC-----CCCChHHHHHHhhhccccCc
Q 011446 389 AKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FD-----FPKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 389 ~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~-----~p~s~~~~~Qr~GRagR~g~ 453 (485)
++|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+ .|.+..+|.||+|||||.|.
T Consensus 311 agl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~ 384 (737)
T PRK02362 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGL 384 (737)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 9999999999999999999999999999999999999999997 55 58899999999999999764
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.5e-45 Score=396.51 Aligned_cols=321 Identities=19% Similarity=0.246 Sum_probs=241.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc------CCceEEEEEcCcHHH
Q 011446 127 LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD------NNVIQVVILVPTREL 200 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~------~~~~~~lil~P~~~l 200 (485)
+++.+.+.+ +.+|..|+|+|.++++.+++++++++++|||||||++|.+|++..+... ..++++||++|+++|
T Consensus 18 l~~~v~~~~-~~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWF-KEKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHH-HHccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 455555554 4479999999999999999999999999999999999999999887542 235689999999999
Q ss_pred HHHHHHHHHH-------Hh----ccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCc--cccCCcceE
Q 011446 201 ALQTSQVCKE-------LG----KHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV--CILKDCSML 266 (485)
Q Consensus 201 a~q~~~~~~~-------~~----~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~--~~l~~~~~i 266 (485)
+.|+++.+.+ ++ ... ++.+...+|+....+....+...++|+||||++|..++.+.. ..+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999875442 22 233 678899999998887777777889999999999987775542 247899999
Q ss_pred EeeccccccCCCCHHHHHHH----HHhCCCCCcEEEEecccchHHHHHHHHhcCC-----CeEEeeccccccccceEEEE
Q 011446 267 VMDEADKLLSPEFQPSVEQL----IRFLPANRQILMFSATFPVTVKDFKDKYLQK-----PYVINLMDELTLKGITQYYA 337 (485)
Q Consensus 267 ViDEah~~~~~~~~~~~~~i----~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 337 (485)
|+||||.+.+..++..+... ......+.|+|++|||+++ ..++....... +....+..............
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 99999999877666554443 3334467899999999974 23333322211 11111111100011100000
Q ss_pred e-------ehhh----hhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc------CCeEEEEcCCCCHHHHHHHH
Q 011446 338 F-------VEER----QKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL------GYSCFYIHAKMLQDHRNRVF 400 (485)
Q Consensus 338 ~-------~~~~----~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~i~ 400 (485)
. .... .....+..++. ..+++||||+|+..|+.++..|.+. +..+..+||+|++++|..++
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 0 0111 11223333332 2468999999999999999999873 46799999999999999999
Q ss_pred HHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcccc
Q 011446 401 HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 401 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~ 451 (485)
+.|++|..+|||||+++++|||+|++++||+++.|.|..+|+||+||+||.
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 999999999999999999999999999999999999999999999999986
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.6e-44 Score=381.58 Aligned_cols=322 Identities=21% Similarity=0.298 Sum_probs=252.8
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
.|+++++++.+.+.+.+.|+..|+|+|.++++. +++++++++++|||||||++|.+|++..+... +.++||++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 477889999999999999999999999999986 78999999999999999999999999887643 348999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC
Q 011446 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (485)
Q Consensus 200 la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (485)
|+.|+++.+.++. ..++++..++|+...... ....++|+|+||+++..++......++++++||+||+|.+.+.++
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999888764 568899999998765432 235689999999999988876666688999999999999988889
Q ss_pred HHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccc-cc-eEEEEeehh-------hhhHHHHHH
Q 011446 280 QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLK-GI-TQYYAFVEE-------RQKVHCLNT 350 (485)
Q Consensus 280 ~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-------~~~~~~l~~ 350 (485)
...+..++..+..+.|+|++|||++. ..++.. ++....+.......+.. .+ .+.+..... ......+..
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYD 233 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHH
Confidence 99999999999889999999999974 455544 44433211111111100 00 000001111 111123333
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHHHH---------------------------------cCCeEEEEcCCCCHHHHH
Q 011446 351 LFSKLQINQSIIFCNSVNRVELLAKKITE---------------------------------LGYSCFYIHAKMLQDHRN 397 (485)
Q Consensus 351 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------------------------------~~~~~~~~h~~~~~~~r~ 397 (485)
++. ..+++||||++++.|+.++..|.. ....+.++|++|++++|.
T Consensus 234 ~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~ 311 (720)
T PRK00254 234 AVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERV 311 (720)
T ss_pred HHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHH
Confidence 333 356899999999999988766642 123589999999999999
Q ss_pred HHHHHHhcCCccEEEEccccccCCCCCCCCEEEE-------cCCCC-ChHHHHHHhhhccccC
Q 011446 398 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN-------FDFPK-NSETYLHRVCWIQLSF 452 (485)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~-------~~~p~-s~~~~~Qr~GRagR~g 452 (485)
.+++.|++|.++|||||+++++|+|+|++++||. ++.|. +..+|.||+|||||.|
T Consensus 312 ~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~ 374 (720)
T PRK00254 312 LIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK 374 (720)
T ss_pred HHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC
Confidence 9999999999999999999999999999999994 55543 5789999999999954
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.7e-43 Score=365.90 Aligned_cols=306 Identities=22% Similarity=0.276 Sum_probs=237.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-CEEEEccCCCchhHHhHHHHHhhhhccCCce-EEEEEcCcHHHHHHHHHHHHHHhccC
Q 011446 138 KGFERPSPIQEESIPIALTGS-DILARAKNGTGKTAAFCIPALEKIDQDNNVI-QVVILVPTRELALQTSQVCKELGKHL 215 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~-~~lil~P~~~la~q~~~~~~~~~~~~ 215 (485)
.||. |+|||.++++.++.|+ ++++.+|||||||.++.++++.. ......+ ++++++|+|+|+.|+++.+.++++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 3887 9999999999999998 58888999999999776666633 2222334 44557799999999999999988755
Q ss_pred -----------------------CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhh-c--------Cc---ccc
Q 011446 216 -----------------------NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSK-K--------GV---CIL 260 (485)
Q Consensus 216 -----------------------~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~-~--------~~---~~l 260 (485)
++++..++||.+...+...+..+++|||+|++.+.+-.. + +. ..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L 169 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL 169 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhh
Confidence 478899999999999999998999999999765533111 0 00 126
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhC--CC---CCcEEEEecccchHHHHHHHHhcCCCeEEeecc-ccccccceE
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFL--PA---NRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQ 334 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~--~~---~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 334 (485)
.+++++|||||| ++.+|...+..|+..+ ++ ++|+++||||++.++.++...++.++..+.+.. .....++.+
T Consensus 170 ~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q 247 (844)
T TIGR02621 170 GQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVK 247 (844)
T ss_pred ccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEE
Confidence 789999999999 5789999999999964 33 269999999999888888777776765554432 233334444
Q ss_pred EEEeehhhhhHHH----HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHH-----HHHHHHhc
Q 011446 335 YYAFVEERQKVHC----LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN-----RVFHDFRN 405 (485)
Q Consensus 335 ~~~~~~~~~~~~~----l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~-----~i~~~f~~ 405 (485)
++. .....+... +..++ ....+++||||||++.|+.+++.|.+.++ ..+||.|++.+|. .+++.|++
T Consensus 248 ~v~-v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 248 LVP-PSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLP 323 (844)
T ss_pred EEe-cChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhc
Confidence 433 223333322 22222 23457899999999999999999998876 8999999999999 78999987
Q ss_pred ----CC-------ccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcc
Q 011446 406 ----GA-------CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSL 454 (485)
Q Consensus 406 ----g~-------~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~ 454 (485)
|. ..|||||+++++||||+. ++||+...| .++|+||+||+||.|+.
T Consensus 324 ~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 324 QMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred cccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCC
Confidence 44 679999999999999986 888887766 68999999999999874
No 45
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-45 Score=316.91 Aligned_cols=309 Identities=41% Similarity=0.662 Sum_probs=280.6
Q ss_pred ccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEE
Q 011446 115 TATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL 194 (485)
Q Consensus 115 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 194 (485)
..-....|.|+-|.+++++++-+.||+.|..+|.++||...-|-|+++.|..|.|||.+|.+..++.+........++++
T Consensus 37 v~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvm 116 (387)
T KOG0329|consen 37 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVM 116 (387)
T ss_pred EEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEE
Confidence 33445679999999999999999999999999999999999999999999999999999999999999887777899999
Q ss_pred cCcHHHHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeecccc
Q 011446 195 VPTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK 273 (485)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~ 273 (485)
|.||+||-|+.....++.+.+ +.++.+++||.++..+...+.+.++|+|+|||+++.+..+..+.++++++.|+|||+.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 999999999999888888776 5789999999999988888888999999999999999999999999999999999997
Q ss_pred ccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc--cccccceEEEEeehhhhhHHHHHH
Q 011446 274 LLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE--LTLKGITQYYAFVEERQKVHCLNT 350 (485)
Q Consensus 274 ~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 350 (485)
|++ .+.+.++..+.+..|...|++++|||++.+++....+++.+|..+.+..+ ....++.++|....+..|...+.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 765 57899999999999999999999999999999999999999987776654 456788899998999999999999
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEE
Q 011446 351 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 430 (485)
Q Consensus 351 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI 430 (485)
++.....++++||+.+... | + | ..+ +|||+++++|+||..++.|+
T Consensus 277 LLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat~lfgrgmdiervNi~~ 321 (387)
T KOG0329|consen 277 LLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVATDLFGRGMDIERVNIVF 321 (387)
T ss_pred hhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHHhhhhccccCcccceeee
Confidence 9999999999999998765 1 0 2 123 89999999999999999999
Q ss_pred EcCCCCChHHHHHHhhhccccCcccccc
Q 011446 431 NFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 431 ~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+||+|.+..+|+||+|||||.|..|+.-
T Consensus 322 NYdmp~~~DtYlHrv~rAgrfGtkglai 349 (387)
T KOG0329|consen 322 NYDMPEDSDTYLHRVARAGRFGTKGLAI 349 (387)
T ss_pred ccCCCCCchHHHHHhhhhhcccccccee
Confidence 9999999999999999999999999874
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.5e-43 Score=361.65 Aligned_cols=319 Identities=22% Similarity=0.281 Sum_probs=259.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc-----CCceEEEEEcCcHHHH
Q 011446 127 LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-----NNVIQVVILVPTRELA 201 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-----~~~~~~lil~P~~~la 201 (485)
|++.+.+.++.. |..||+.|.++||.+.+|++++|+||||||||+++.+|++..+... ..+..+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 677788888877 9999999999999999999999999999999999999999998776 3457899999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC--ccccCCcceEEeeccccccCCCC
Q 011446 202 LQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEF 279 (485)
Q Consensus 202 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~ 279 (485)
.++...+...++.+|+.+.+.+|++...+..+...+++||+++|||.|.-++... ...|.++.+||+||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 9999999999999999999999999999888888999999999999998776543 34588999999999998876554
Q ss_pred HHH----HHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCC---eEEeeccccccccceEEEEee-------hhhhhH
Q 011446 280 QPS----VEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKP---YVINLMDELTLKGITQYYAFV-------EERQKV 345 (485)
Q Consensus 280 ~~~----~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 345 (485)
+.. ++++..... +.|.|++|||.. +..+..+...... .++.+.... ...+....... ......
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~k-~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAAK-KLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccCC-cceEEEEecCCccccccchhHHHH
Confidence 433 444444444 899999999986 3444444433332 233222211 11111111111 112234
Q ss_pred HHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 011446 346 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG-YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (485)
Q Consensus 346 ~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (485)
..+..+++++ ..+|||+||+..+|.++..|++.+ ..+..+||+++.+.|..+.++|++|+.+++|||+.++-|||+.
T Consensus 244 ~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 4455555544 389999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChHHHHHHhhhcccc
Q 011446 425 AVNVVINFDFPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 425 ~v~~VI~~~~p~s~~~~~Qr~GRagR~ 451 (485)
+++.||+++.|+++..++||+||+|..
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr 348 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHR 348 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccc
Confidence 999999999999999999999999984
No 47
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-44 Score=345.25 Aligned_cols=333 Identities=28% Similarity=0.410 Sum_probs=280.5
Q ss_pred cCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc-----CCceEEEEEcCcHH
Q 011446 125 YFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-----NNVIQVVILVPTRE 199 (485)
Q Consensus 125 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-----~~~~~~lil~P~~~ 199 (485)
+.....++.++.+.+|..|+|+|.+++|.++.+++++.++|||||||++|.+|++..+... ..+.+++|+.|+++
T Consensus 141 ~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptre 220 (593)
T KOG0344|consen 141 YSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRE 220 (593)
T ss_pred hhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHH
Confidence 6678899999999999999999999999999999999999999999999999999998643 34679999999999
Q ss_pred HHHHHHHHHHHHh--ccCCceEEEEECCCChH-HHHHHhcCCCeEEEEcchHHHHhhhcCc--cccCCcceEEeeccccc
Q 011446 200 LALQTSQVCKELG--KHLNIQVMVTTGGTSLK-DDIMRLYQPVHLLVGTPGRILDLSKKGV--CILKDCSMLVMDEADKL 274 (485)
Q Consensus 200 la~q~~~~~~~~~--~~~~~~v~~~~g~~~~~-~~~~~~~~~~~Ili~Tp~~l~~~~~~~~--~~l~~~~~iViDEah~~ 274 (485)
|+.|++..+.++. +..+..+..+....... .........++|++.||-++...+.... ..+..+.++|+||||++
T Consensus 221 La~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~l 300 (593)
T KOG0344|consen 221 LAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLL 300 (593)
T ss_pred HHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhh
Confidence 9999999999998 55555554444332211 1112223457899999999999888764 56889999999999999
Q ss_pred cCC-CCHHHHHHHHHhCC-CCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc-cccccceEEEE-eehhhhhHHHHHH
Q 011446 275 LSP-EFQPSVEQLIRFLP-ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYA-FVEERQKVHCLNT 350 (485)
Q Consensus 275 ~~~-~~~~~~~~i~~~~~-~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~~ 350 (485)
.+. .|...+..++..+. ++..+=+||||.+..+++++.....++..+.+... .....+.+... ......|.-.+..
T Consensus 301 fe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq 380 (593)
T KOG0344|consen 301 FEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQ 380 (593)
T ss_pred hChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHH
Confidence 988 88888988888775 46677899999999999999998888877666533 22233333333 3355667778888
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHH-HHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEE
Q 011446 351 LFSKLQINQSIIFCNSVNRVELLAKKI-TELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVV 429 (485)
Q Consensus 351 l~~~~~~~~~lVf~~~~~~~~~l~~~L-~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~V 429 (485)
++...-..++|||+.+.+.|..|+..| .-.++.+..+||..++.+|++.+++|+.|++.|||||+++++|+|+.+++.|
T Consensus 381 ~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~V 460 (593)
T KOG0344|consen 381 LVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLV 460 (593)
T ss_pred HHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceE
Confidence 888777779999999999999999999 5668999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChHHHHHHhhhccccCccccc
Q 011446 430 INFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 430 I~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
|+||+|.+..+|+||+||.||.|+-+..
T Consensus 461 InyD~p~s~~syihrIGRtgRag~~g~A 488 (593)
T KOG0344|consen 461 INYDFPQSDLSYIHRIGRTGRAGRSGKA 488 (593)
T ss_pred EecCCCchhHHHHHHhhccCCCCCCcce
Confidence 9999999999999999999998877765
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.1e-43 Score=371.28 Aligned_cols=320 Identities=20% Similarity=0.260 Sum_probs=246.0
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
.|.++++++.+.+.+.+.+|. ++++|.++++.+.+++++++++|||||||+++.++++..+... .++||++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 577889999999999999986 9999999999999999999999999999999999999887653 388999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCH
Q 011446 201 ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ 280 (485)
Q Consensus 201 a~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~ 280 (485)
+.|+++.+.++. ..+..+...+|+...... ....++|+|+||+++..++.++...+.++++||+||||++.+.+++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999988764 467888888887764432 2246799999999999988887777899999999999999888888
Q ss_pred HHHHHHHHh---CCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccc-cc---eEEEEeehhhhhHHHHHHHHH
Q 011446 281 PSVEQLIRF---LPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLK-GI---TQYYAFVEERQKVHCLNTLFS 353 (485)
Q Consensus 281 ~~~~~i~~~---~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~l~~l~~ 353 (485)
..++.++.. ++++.|+|++|||++. ..++.. ++..+.+.......+.. .+ ...+.......... +..++.
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~-~~~~i~ 230 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVD-INSLIK 230 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCccCCCCCCCCeEEEEEecCeeeeccccccccc-HHHHHH
Confidence 888777543 4578999999999974 445444 44332211111111100 00 00000001111111 222333
Q ss_pred h--cCCCcEEEEecChhHHHHHHHHHHHc-------------------------CCeEEEEcCCCCHHHHHHHHHHHhcC
Q 011446 354 K--LQINQSIIFCNSVNRVELLAKKITEL-------------------------GYSCFYIHAKMLQDHRNRVFHDFRNG 406 (485)
Q Consensus 354 ~--~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------~~~~~~~h~~~~~~~r~~i~~~f~~g 406 (485)
. ...+++||||++++.|+.++..|... ...+.++||+|++++|..+++.|++|
T Consensus 231 ~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g 310 (674)
T PRK01172 231 ETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR 310 (674)
T ss_pred HHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC
Confidence 2 24579999999999999999988653 12478899999999999999999999
Q ss_pred CccEEEEccccccCCCCCCCCEEEEcCC---------CCChHHHHHHhhhccccC
Q 011446 407 ACRNLVCTDLFTRGIDIQAVNVVINFDF---------PKNSETYLHRVCWIQLSF 452 (485)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI~~~~---------p~s~~~~~Qr~GRagR~g 452 (485)
.++|||||+++++|+|+|+..+|| .+. |.+..+|.||+|||||.|
T Consensus 311 ~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 311 YIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 999999999999999999865544 443 558899999999999987
No 49
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.4e-42 Score=365.94 Aligned_cols=317 Identities=15% Similarity=0.142 Sum_probs=239.4
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHH-HHHhccCCceEEEEEC
Q 011446 146 IQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVC-KELGKHLNIQVMVTTG 224 (485)
Q Consensus 146 ~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~-~~~~~~~~~~v~~~~g 224 (485)
+-.+.+..+.+++++|++|+||||||++|.+++++... .+++++|++|+|++|.|+++.+ ..+....+..|+..++
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr 82 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVR 82 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEc
Confidence 44566677778899999999999999999999998763 2358999999999999998866 4565666667766665
Q ss_pred CCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCCCCHHHH-HHHHHhCCCCCcEEEEecc
Q 011446 225 GTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPSV-EQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 225 ~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~~-~~i~~~~~~~~~~i~~SAT 302 (485)
+.+ .....++|+|+|+|+|++++..+ ..++++++|||||+| ++++.++...+ ..+...++.+.|+|+||||
T Consensus 83 ~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 83 GEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred ccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 433 12346799999999999988874 468999999999999 67887776544 4555667889999999999
Q ss_pred cchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhh-----HHHHHHHHHhcCCCcEEEEecChhHHHHHHHHH
Q 011446 303 FPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQK-----VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI 377 (485)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L 377 (485)
++... ...++.++..+...... ..+.++|.......+ ...+..++.. ..+++||||+++.+++.+++.|
T Consensus 156 l~~~~---l~~~l~~~~vI~~~gr~--~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L 229 (819)
T TIGR01970 156 LDGER---LSSLLPDAPVVESEGRS--FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQL 229 (819)
T ss_pred CCHHH---HHHHcCCCcEEEecCcc--eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHH
Confidence 98543 34566555444433221 123344443332222 1233344433 3579999999999999999999
Q ss_pred HH---cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCC------------------
Q 011446 378 TE---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK------------------ 436 (485)
Q Consensus 378 ~~---~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~------------------ 436 (485)
.+ .++.+.++||+|++++|..+++.|++|..+||||||++++|||||+|++||++|+|+
T Consensus 230 ~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 309 (819)
T TIGR01970 230 AERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRI 309 (819)
T ss_pred HhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEE
Confidence 87 378999999999999999999999999999999999999999999999999999975
Q ss_pred ChHHHHHHhhhccccCcccccc---hHHHHHHHHHhhccccccCC
Q 011446 437 NSETYLHRVCWIQLSFSLSLPN---LQFMCSMLMYICFTDRLVDL 478 (485)
Q Consensus 437 s~~~~~Qr~GRagR~g~~~~~~---~~~~~~~~~~~~~~~~~~~~ 478 (485)
|.++|.||+|||||.+...++. ...+..+..+...++...++
T Consensus 310 Skasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L 354 (819)
T TIGR01970 310 SQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADL 354 (819)
T ss_pred CHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCc
Confidence 4567999999999985544443 33344455555555544443
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.4e-42 Score=364.95 Aligned_cols=314 Identities=21% Similarity=0.220 Sum_probs=244.1
Q ss_pred CCHHHHHHHHHc-CCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 127 LKRELLMGIFEK-GFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 127 l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
.+..+.+.+.+. +| .||++|.++|+.++.+ .|++++|+||||||.+|+++++..+..+ .+++|++||++
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~ 511 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTL 511 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHH
Confidence 455666767664 77 5999999999999975 6899999999999999999999887643 58999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEECCCChHHHHH---Hhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeecccccc
Q 011446 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM---RLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL 275 (485)
Q Consensus 200 la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~ 275 (485)
||.|+++.+++++...++++..++|+....+... .+. ..++|+|+||..+ . ....++++++|||||+|++
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~-~~v~f~~L~llVIDEahrf- 585 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q-KDVKFKDLGLLIIDEEQRF- 585 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h-CCCCcccCCEEEeeccccc-
Confidence 9999999999999888899999988876544332 222 3689999999533 2 2445889999999999984
Q ss_pred CCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhc
Q 011446 276 SPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKL 355 (485)
Q Consensus 276 ~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 355 (485)
.......+..++.+.++++||||+.+....+......++..+..... ....+..++...........+...+ .
T Consensus 586 ----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~-~R~~V~t~v~~~~~~~i~~~i~~el--~ 658 (926)
T TIGR00580 586 ----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE-DRLPVRTFVMEYDPELVREAIRREL--L 658 (926)
T ss_pred ----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC-CccceEEEEEecCHHHHHHHHHHHH--H
Confidence 44456667777888999999999876665555545555554443221 1122333332222211111111111 2
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (485)
..++++|||++++.++.+++.|.+. ++.+..+||+|++.+|+.++++|++|+.+|||||+++++|||+|++++||+++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~ 738 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIER 738 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEec
Confidence 4578999999999999999999985 78999999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChHHHHHHhhhccccCccccc
Q 011446 434 FPK-NSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 434 ~p~-s~~~~~Qr~GRagR~g~~~~~ 457 (485)
.|. +..+|.||+||+||.|+.+..
T Consensus 739 a~~~gls~l~Qr~GRvGR~g~~g~a 763 (926)
T TIGR00580 739 ADKFGLAQLYQLRGRVGRSKKKAYA 763 (926)
T ss_pred CCCCCHHHHHHHhcCCCCCCCCeEE
Confidence 975 678999999999999876544
No 51
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.4e-42 Score=362.36 Aligned_cols=315 Identities=14% Similarity=0.137 Sum_probs=235.7
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHH-HHHhccCCceEEEEEC
Q 011446 146 IQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVC-KELGKHLNIQVMVTTG 224 (485)
Q Consensus 146 ~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~-~~~~~~~~~~v~~~~g 224 (485)
+-.+.+..+.+++++++.|+||||||++|.+++++.... .++++|++|+|++|.|+++.+ ..+....+..++..++
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 345666777788999999999999999999999976432 238999999999999998876 4556667777877776
Q ss_pred CCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeecccc-ccCCCCHH-HHHHHHHhCCCCCcEEEEecc
Q 011446 225 GTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK-LLSPEFQP-SVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 225 ~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~-~~~~~~~~-~~~~i~~~~~~~~~~i~~SAT 302 (485)
+.+.. ....+|+|+|||+|++++.++ ..++++++|||||+|+ .++.++.. .+..++..++++.|+|+||||
T Consensus 86 ~~~~~------~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 86 AESKV------GPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred Ccccc------CCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecC
Confidence 65432 245689999999999988874 4689999999999995 56655433 344566777889999999999
Q ss_pred cchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHH-----HHHHHHHhcCCCcEEEEecChhHHHHHHHHH
Q 011446 303 FPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVH-----CLNTLFSKLQINQSIIFCNSVNRVELLAKKI 377 (485)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L 377 (485)
++.. .+ ..++.++..+...... ..+.++|.......+.. .+..++.. ..+.+||||+++.+++.+++.|
T Consensus 159 l~~~--~l-~~~~~~~~~I~~~gr~--~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L 232 (812)
T PRK11664 159 LDND--RL-QQLLPDAPVIVSEGRS--FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQL 232 (812)
T ss_pred CCHH--HH-HHhcCCCCEEEecCcc--ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHH
Confidence 9854 23 4566555444433221 12444444333333321 33344433 4589999999999999999999
Q ss_pred HH---cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCC------------------
Q 011446 378 TE---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK------------------ 436 (485)
Q Consensus 378 ~~---~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~------------------ 436 (485)
.+ .++.+.++||+|++++|..+++.|++|.++||||||++++||||++|++||++|.++
T Consensus 233 ~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 312 (812)
T PRK11664 233 ASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRI 312 (812)
T ss_pred HHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEee
Confidence 87 478899999999999999999999999999999999999999999999999998875
Q ss_pred ChHHHHHHhhhccccCcccccc---hHHHHHHHHHhhcccccc
Q 011446 437 NSETYLHRVCWIQLSFSLSLPN---LQFMCSMLMYICFTDRLV 476 (485)
Q Consensus 437 s~~~~~Qr~GRagR~g~~~~~~---~~~~~~~~~~~~~~~~~~ 476 (485)
|.++|.||+|||||.+...++. ...+..+..+...++...
T Consensus 313 Skasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~ 355 (812)
T PRK11664 313 SQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHS 355 (812)
T ss_pred chhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceecc
Confidence 4578999999999985444443 223333444444444433
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.3e-41 Score=366.36 Aligned_cols=312 Identities=21% Similarity=0.226 Sum_probs=243.4
Q ss_pred CHHHHHHH-HHcCCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 128 KRELLMGI-FEKGFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 128 ~~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
+..+.+.+ .+..| .|++.|.++|+.++.+ .|++++|+||+|||.+|+.+++..+. .+.+++|++||++|
T Consensus 586 ~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eL 661 (1147)
T PRK10689 586 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLL 661 (1147)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHH
Confidence 34444444 44466 7999999999999987 79999999999999999988877664 34589999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc----CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC
Q 011446 201 ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY----QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS 276 (485)
Q Consensus 201 a~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~ 276 (485)
|.|+++.+.+++...++++..++|+.+..++...+. ..++|+|+||+.+. ....+.++++|||||+|++
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf-- 734 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF-- 734 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc--
Confidence 999999999888777888888988887766654332 46899999997442 2345778999999999996
Q ss_pred CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehh-hhhHHHHHHHHHhc
Q 011446 277 PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEE-RQKVHCLNTLFSKL 355 (485)
Q Consensus 277 ~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~ 355 (485)
++ .....++.++.++++++||||+.+....+....+.++..+...... ...+..++..... ..+...+..+.
T Consensus 735 -G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~-r~~v~~~~~~~~~~~~k~~il~el~--- 807 (1147)
T PRK10689 735 -GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR-RLAVKTFVREYDSLVVREAILREIL--- 807 (1147)
T ss_pred -ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC-CCCceEEEEecCcHHHHHHHHHHHh---
Confidence 22 2345567788899999999998878777777777777666543221 1223333322221 12222333332
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (485)
..++++|||++++.++.+++.|.+. +..+..+||+|++.+|++++..|++|+.+|||||+++++|||+|++++||..+
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec
Confidence 3568999999999999999999987 78899999999999999999999999999999999999999999999999544
Q ss_pred CC-CChHHHHHHhhhccccCccccc
Q 011446 434 FP-KNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 434 ~p-~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
.. .+..+|+||+||+||.|+.+..
T Consensus 888 ad~fglaq~~Qr~GRvGR~g~~g~a 912 (1147)
T PRK10689 888 ADHFGLAQLHQLRGRVGRSHHQAYA 912 (1147)
T ss_pred CCCCCHHHHHHHhhccCCCCCceEE
Confidence 32 2456899999999999876544
No 53
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.1e-41 Score=347.67 Aligned_cols=295 Identities=16% Similarity=0.189 Sum_probs=217.5
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCchhHH---------hHHHHHhhhh---ccCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011446 145 PIQEESIPIALTGSDILARAKNGTGKTAA---------FCIPALEKID---QDNNVIQVVILVPTRELALQTSQVCKELG 212 (485)
Q Consensus 145 ~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~---------~~~~~l~~l~---~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (485)
.+|.++++.+++++++|+.|+||||||++ |++|.+..+. ......+++|++||++||.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999998 3334444432 12334589999999999999988877654
Q ss_pred cc---CCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHh
Q 011446 213 KH---LNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF 289 (485)
Q Consensus 213 ~~---~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~ 289 (485)
.. .+..+...+|+... ..........+|+++|++.. ...++++++|||||||++...+ ..+..++..
T Consensus 247 g~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~ 316 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARK 316 (675)
T ss_pred CccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHHHH
Confidence 33 35667888888763 22222233678999997631 1247889999999999876543 334445544
Q ss_pred C-CCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeeh----------hhhhHHHHHHHHHh--cC
Q 011446 290 L-PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE----------ERQKVHCLNTLFSK--LQ 356 (485)
Q Consensus 290 ~-~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~l~~~--~~ 356 (485)
. +..+|+++||||++.++..+ ..++.+|..+.+... ....+.+++.... ...+...+..+... ..
T Consensus 317 ~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr-t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~ 394 (675)
T PHA02653 317 HIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG-TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPK 394 (675)
T ss_pred hhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC-cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhccc
Confidence 3 23458999999999888776 577777777766432 2233444443211 11222233333322 23
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHH-hcCCccEEEEccccccCCCCCCCCEEEEcC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDF-RNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f-~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (485)
.+++||||+++++|+.+++.|.+. ++.+.++||+|++. ++.+++| ++|+++|||||++|++|||||+|++||++|
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G 472 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTG 472 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECC
Confidence 468999999999999999999887 68999999999975 4666777 689999999999999999999999999999
Q ss_pred ---CCC---------ChHHHHHHhhhccccCc
Q 011446 434 ---FPK---------NSETYLHRVCWIQLSFS 453 (485)
Q Consensus 434 ---~p~---------s~~~~~Qr~GRagR~g~ 453 (485)
.|. |.++|.||+|||||...
T Consensus 473 ~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~ 504 (675)
T PHA02653 473 RVYVPEPFGGKEMFISKSMRTQRKGRVGRVSP 504 (675)
T ss_pred CccCCCcccCcccccCHHHHHHhccCcCCCCC
Confidence 565 88999999999999833
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.9e-41 Score=367.36 Aligned_cols=287 Identities=21% Similarity=0.277 Sum_probs=217.6
Q ss_pred EEccCCCchhHHhHHHHHhhhhcc----------CCceEEEEEcCcHHHHHHHHHHHHHHh------------ccCCceE
Q 011446 162 ARAKNGTGKTAAFCIPALEKIDQD----------NNVIQVVILVPTRELALQTSQVCKELG------------KHLNIQV 219 (485)
Q Consensus 162 i~~~TGsGKT~~~~~~~l~~l~~~----------~~~~~~lil~P~~~la~q~~~~~~~~~------------~~~~~~v 219 (485)
|++|||||||++|.+|++..+... ..++++|||+|+++|+.|+.+.++... ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999988643 235799999999999999998876422 1246889
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC-ccccCCcceEEeeccccccCCCCHH----HHHHHHHhCCCCC
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADKLLSPEFQP----SVEQLIRFLPANR 294 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~-~~~l~~~~~iViDEah~~~~~~~~~----~~~~i~~~~~~~~ 294 (485)
...+|+++..+....+.++++|+|+||++|..++.+. ...++++++|||||+|.+.+..++. .+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988877777788999999999998876543 3468999999999999998765443 4555556667789
Q ss_pred cEEEEecccchHHHHHHHHhcCC--CeEEeeccccccccceEEEEeehhhh---------------------hHHHHHHH
Q 011446 295 QILMFSATFPVTVKDFKDKYLQK--PYVINLMDELTLKGITQYYAFVEERQ---------------------KVHCLNTL 351 (485)
Q Consensus 295 ~~i~~SATl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~l~~l 351 (485)
|+|++|||+++ .+++.. ++.. +..+..........+...+. ..... .......+
T Consensus 161 QrIgLSATI~n-~eevA~-~L~g~~pv~Iv~~~~~r~~~l~v~vp-~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAA-FLGGDRPVTVVNPPAMRHPQIRIVVP-VANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHH-HhcCCCCEEEECCCCCcccceEEEEe-cCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999985 455554 4432 33222111111111221111 11000 00111223
Q ss_pred HHh-cCCCcEEEEecChhHHHHHHHHHHHcC---------------------------------CeEEEEcCCCCHHHHH
Q 011446 352 FSK-LQINQSIIFCNSVNRVELLAKKITELG---------------------------------YSCFYIHAKMLQDHRN 397 (485)
Q Consensus 352 ~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~---------------------------------~~~~~~h~~~~~~~r~ 397 (485)
+.. ....++||||||+..|+.++..|++.. +.+..+||+|++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 322 235689999999999999999997641 1256899999999999
Q ss_pred HHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcccc
Q 011446 398 RVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~ 451 (485)
.+++.|++|++++||||+.+++||||+++++||+++.|.|+.+|+||+||+||.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999995
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.6e-40 Score=346.03 Aligned_cols=310 Identities=19% Similarity=0.232 Sum_probs=230.9
Q ss_pred HHHHHHHHHc-CCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHH
Q 011446 129 RELLMGIFEK-GFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (485)
Q Consensus 129 ~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (485)
..+.+.+.+. +| .||++|.++++.+..+ .+++++|+||||||++|++|++..+.. +.+++|++||++||
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHH
Confidence 4555555544 66 6999999999999986 379999999999999999999988764 45899999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEECCCChHHHH---HHhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC
Q 011446 202 LQTSQVCKELGKHLNIQVMVTTGGTSLKDDI---MRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (485)
Q Consensus 202 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (485)
.|+++.+++++...++++..++|+....+.. ..+. ..++|+|+||+.+.. ...+.++++||+||+|++
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrf--- 395 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRF--- 395 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhh---
Confidence 9999999999999999999999998854332 2333 358999999987643 334788999999999985
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccc-cccceEEEEeehhhhhHHHHHHHHHhc-
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELT-LKGITQYYAFVEERQKVHCLNTLFSKL- 355 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~- 355 (485)
.......+.......++++||||+.+....+.. ..+.....+..... ...+...+. ........+..+....
T Consensus 396 --g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~--~~~~~~~~~~~i~~~~~ 469 (681)
T PRK10917 396 --GVEQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVI--PDSRRDEVYERIREEIA 469 (681)
T ss_pred --hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEe--CcccHHHHHHHHHHHHH
Confidence 223334444455568899999998655443332 22222222221111 122322222 2222222223332222
Q ss_pred CCCcEEEEecChh--------HHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 011446 356 QINQSIIFCNSVN--------RVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA 425 (485)
Q Consensus 356 ~~~~~lVf~~~~~--------~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~ 425 (485)
...+++|||+.++ .++.+++.|.+. ++.+..+||+|++++|..++++|++|+.+|||||+++++|+|+|+
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~ 549 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPN 549 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCC
Confidence 3458999999654 456677888765 578999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC-ChHHHHHHhhhccccCcccc
Q 011446 426 VNVVINFDFPK-NSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 426 v~~VI~~~~p~-s~~~~~Qr~GRagR~g~~~~ 456 (485)
+++||+++.|. ..+.+.||+||+||.|.-+.
T Consensus 550 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 581 (681)
T PRK10917 550 ATVMVIENAERFGLAQLHQLRGRVGRGAAQSY 581 (681)
T ss_pred CcEEEEeCCCCCCHHHHHHHhhcccCCCCceE
Confidence 99999999997 57888999999999876443
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.8e-39 Score=338.11 Aligned_cols=308 Identities=20% Similarity=0.212 Sum_probs=225.7
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHH
Q 011446 132 LMGIFEKGFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS 205 (485)
Q Consensus 132 ~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~ 205 (485)
.+.+...+| .|++.|.++++.++.+ .+.+++|+||||||++|++|++..+.. +.+++|++||++||.|++
T Consensus 226 ~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 226 TKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHY 301 (630)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHH
Confidence 344456688 7999999999999976 258999999999999999999988764 448999999999999999
Q ss_pred HHHHHHhccCCceEEEEECCCChHHHH---HHh-cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHH
Q 011446 206 QVCKELGKHLNIQVMVTTGGTSLKDDI---MRL-YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQP 281 (485)
Q Consensus 206 ~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~-~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~ 281 (485)
+.+++++...++++..++|+....+.. ..+ ...++|+|+||+.+.+ ...+.++++||+||+|++... .
T Consensus 302 ~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~-q-- 373 (630)
T TIGR00643 302 NSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE-Q-- 373 (630)
T ss_pred HHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-H--
Confidence 999999998899999999998765432 222 2457999999997743 344788999999999985321 1
Q ss_pred HHHHHHHhCC--CCCcEEEEecccchHHHHHHHHhcCCCeEEeecccc-ccccceEEEEeehhhhhHHHHHHHHHhc-CC
Q 011446 282 SVEQLIRFLP--ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL-TLKGITQYYAFVEERQKVHCLNTLFSKL-QI 357 (485)
Q Consensus 282 ~~~~i~~~~~--~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~ 357 (485)
...+..... ...++++||||+.+....+.. ..+-....+.... ....+...+ .....+...+..+.... ..
T Consensus 374 -r~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~--~~~~~~~~~~~~i~~~l~~g 448 (630)
T TIGR00643 374 -RKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVL--IKHDEKDIVYEFIEEEIAKG 448 (630)
T ss_pred -HHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEE--eCcchHHHHHHHHHHHHHhC
Confidence 112222222 267899999997654333222 1111111111111 111222222 22222223333333332 34
Q ss_pred CcEEEEecChh--------HHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCC
Q 011446 358 NQSIIFCNSVN--------RVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (485)
Q Consensus 358 ~~~lVf~~~~~--------~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (485)
.+++|||+..+ .++.+++.|.+. ++.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 449 ~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~ 528 (630)
T TIGR00643 449 RQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNAT 528 (630)
T ss_pred CcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCc
Confidence 58999999864 466777777764 67899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC-ChHHHHHHhhhccccCcccc
Q 011446 428 VVINFDFPK-NSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 428 ~VI~~~~p~-s~~~~~Qr~GRagR~g~~~~ 456 (485)
+||+++.|. +.+.|.||+||+||.|.-+.
T Consensus 529 ~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 558 (630)
T TIGR00643 529 VMVIEDAERFGLSQLHQLRGRVGRGDHQSY 558 (630)
T ss_pred EEEEeCCCcCCHHHHHHHhhhcccCCCCcE
Confidence 999999986 67889999999999876443
No 57
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.3e-40 Score=302.39 Aligned_cols=294 Identities=21% Similarity=0.275 Sum_probs=234.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
..++++|.|.++|++...+.++++..|||.||++||.+|++.. + +.+||+||..+|++++.-.++.++ +.
T Consensus 91 ~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----d-g~alvi~plislmedqil~lkqlg----i~ 160 (695)
T KOG0353|consen 91 HLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----D-GFALVICPLISLMEDQILQLKQLG----ID 160 (695)
T ss_pred hHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----C-CceEeechhHHHHHHHHHHHHHhC----cc
Confidence 4678999999999999999999999999999999999999864 2 278999999999988877887774 33
Q ss_pred EEEEECCCChHHHH------HHhcCCCeEEEEcchHHHHh---hhc--CccccCCcceEEeeccccccCC--CCHHHHHH
Q 011446 219 VMVTTGGTSLKDDI------MRLYQPVHLLVGTPGRILDL---SKK--GVCILKDCSMLVMDEADKLLSP--EFQPSVEQ 285 (485)
Q Consensus 219 v~~~~g~~~~~~~~------~~~~~~~~Ili~Tp~~l~~~---~~~--~~~~l~~~~~iViDEah~~~~~--~~~~~~~~ 285 (485)
...+...++..+.. ..-.....++|.||+.+... +.+ .......+..|.+||+||++++ +|+++|..
T Consensus 161 as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~ 240 (695)
T KOG0353|consen 161 ASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKA 240 (695)
T ss_pred hhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHH
Confidence 33333333322111 11123568999999988652 111 1333556789999999999874 68988876
Q ss_pred H--HHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHH---HHH-hcCCCc
Q 011446 286 L--IRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNT---LFS-KLQINQ 359 (485)
Q Consensus 286 i--~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---l~~-~~~~~~ 359 (485)
+ +++.-++..+|++|||.+.++...++..+.....+.....+..+++...+..- .....+++.+ +++ ......
T Consensus 241 l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qk-p~n~dd~~edi~k~i~~~f~gqs 319 (695)
T KOG0353|consen 241 LGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQK-PGNEDDCIEDIAKLIKGDFAGQS 319 (695)
T ss_pred HHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeC-CCChHHHHHHHHHHhccccCCCc
Confidence 5 66667888999999999999998888888777777777778888774333222 2222333333 333 234458
Q ss_pred EEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChH
Q 011446 360 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSE 439 (485)
Q Consensus 360 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~ 439 (485)
.||||-++++|+.++..|..+|+.+..||+.|.++++.-+...|..|++.|+|||-++++|||.|+|++|||..+|+|++
T Consensus 320 giiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksie 399 (695)
T KOG0353|consen 320 GIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIE 399 (695)
T ss_pred ceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 011446 440 TYLH 443 (485)
Q Consensus 440 ~~~Q 443 (485)
+|+|
T Consensus 400 nyyq 403 (695)
T KOG0353|consen 400 NYYQ 403 (695)
T ss_pred HHHH
Confidence 9999
No 58
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-40 Score=346.66 Aligned_cols=317 Identities=20% Similarity=0.205 Sum_probs=254.5
Q ss_pred HHHHH-HHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHH
Q 011446 131 LLMGI-FEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK 209 (485)
Q Consensus 131 l~~~l-~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~ 209 (485)
+...+ ...|...+++-|.++|..++.|+|++|.+|||+||++||++|++-.- +-.|||.|..+|+.++...+.
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~------gitvVISPL~SLm~DQv~~L~ 325 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLG------GVTVVISPLISLMQDQVTHLS 325 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccC------CceEEeccHHHHHHHHHHhhh
Confidence 33333 34589999999999999999999999999999999999999998542 267999999999877666553
Q ss_pred HHhccCCceEEEEECCCChHHHH---HHhc-C--CCeEEEEcchHHHHh--hhcCccccCC---cceEEeeccccccCC-
Q 011446 210 ELGKHLNIQVMVTTGGTSLKDDI---MRLY-Q--PVHLLVGTPGRILDL--SKKGVCILKD---CSMLVMDEADKLLSP- 277 (485)
Q Consensus 210 ~~~~~~~~~v~~~~g~~~~~~~~---~~~~-~--~~~Ili~Tp~~l~~~--~~~~~~~l~~---~~~iViDEah~~~~~- 277 (485)
..++....+.++....++. +.+. . ..+|+|.||+++... +......+.. +.++|||||||++++
T Consensus 326 ----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 326 ----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred ----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 3467777888877765332 2222 2 589999999988652 1111222333 789999999999975
Q ss_pred -CCHHHHHHHHH--hCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeeh-hhhhHHHHHHHHH
Q 011446 278 -EFQPSVEQLIR--FLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE-ERQKVHCLNTLFS 353 (485)
Q Consensus 278 -~~~~~~~~i~~--~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~ 353 (485)
+|++.|..+.. ...+...+|++|||.+..+.+.+-..+.......+...+.++|+...+..-. .......+..+-.
T Consensus 402 HdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~ 481 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKL 481 (941)
T ss_pred ccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhh
Confidence 69999998843 3334578999999999999998888887777777777888888854443333 2223334444445
Q ss_pred hcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcC
Q 011446 354 KLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD 433 (485)
Q Consensus 354 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (485)
.++...+||||.++.+|+.++..|.+.++.+..||++|+..+|..+.+.|..++.+|+|||-++++|||.|||++||||+
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~ 561 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS 561 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC
Confidence 56777999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhhccccCccccc
Q 011446 434 FPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
+|+|.+.|+|.+|||||.|....=
T Consensus 562 lPks~E~YYQE~GRAGRDG~~s~C 585 (941)
T KOG0351|consen 562 LPKSFEGYYQEAGRAGRDGLPSSC 585 (941)
T ss_pred CchhHHHHHHhccccCcCCCccee
Confidence 999999999999999999876543
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.5e-38 Score=346.33 Aligned_cols=296 Identities=22% Similarity=0.269 Sum_probs=232.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
|+ .|+++|..+++.++.++|++++||||+|||+ |.+++...+.. .+.+++|++||++|+.|+.+.+++++...++.
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~ 153 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCG 153 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHhhhcCce
Confidence 66 8999999999999999999999999999996 44555444433 35689999999999999999999999988888
Q ss_pred EEEEECCCCh-----HHHHHHhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-----------CCCH-
Q 011446 219 VMVTTGGTSL-----KDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-----------PEFQ- 280 (485)
Q Consensus 219 v~~~~g~~~~-----~~~~~~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-----------~~~~- 280 (485)
+..+.|+... .+....+. ..++|+|+||++|.+.+. .....++++||+||||+++. .+|.
T Consensus 154 ~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~ 231 (1176)
T PRK09401 154 VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSE 231 (1176)
T ss_pred EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCH
Confidence 8877776542 22223333 468999999999998776 33456699999999999985 5674
Q ss_pred HHHHHHHHhCCC------------------------CCcEEEEecccchH-HHHHHHHhcCCCeEEeec-cccccccceE
Q 011446 281 PSVEQLIRFLPA------------------------NRQILMFSATFPVT-VKDFKDKYLQKPYVINLM-DELTLKGITQ 334 (485)
Q Consensus 281 ~~~~~i~~~~~~------------------------~~~~i~~SATl~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 334 (485)
..+..++..++. ..|++++|||+++. +.. .++..+..+.+. ......++.+
T Consensus 232 ~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~ 308 (1176)
T PRK09401 232 EDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVD 308 (1176)
T ss_pred HHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceE
Confidence 567777766654 68999999999864 332 122233223322 2234456766
Q ss_pred EEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhH---HHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEE
Q 011446 335 YYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNR---VELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL 411 (485)
Q Consensus 335 ~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~---~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vl 411 (485)
.+.... .+...+..++.... ..+||||++.+. ++.+++.|...|+.+..+||+| .+.+++|++|+.+||
T Consensus 309 ~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VL 380 (1176)
T PRK09401 309 SYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVL 380 (1176)
T ss_pred EEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEE
Confidence 666544 55666777777665 579999999777 9999999999999999999999 234599999999999
Q ss_pred EE----ccccccCCCCCC-CCEEEEcCCCC------ChHHHHHHhhhcccc
Q 011446 412 VC----TDLFTRGIDIQA-VNVVINFDFPK------NSETYLHRVCWIQLS 451 (485)
Q Consensus 412 va----T~~~~~Gidi~~-v~~VI~~~~p~------s~~~~~Qr~GRagR~ 451 (485)
|| |++++||||+|+ |++|||||+|+ ....|.||+||.-..
T Consensus 381 Vatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 381 VGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99 699999999999 89999999999 678899999998643
No 60
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=7.2e-38 Score=347.75 Aligned_cols=312 Identities=19% Similarity=0.163 Sum_probs=238.7
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHH
Q 011446 131 LLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK 209 (485)
Q Consensus 131 l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~ 209 (485)
+.+.+++ .|| .|+++|.++++.++.++|++++||||+|||++++++++.... .+.++||++||++|+.|+.+.++
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHHH
Confidence 4445555 589 699999999999999999999999999999976666554432 34589999999999999999999
Q ss_pred HHhccCC--ceEEEEECCCChHHHHH---Hhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-------
Q 011446 210 ELGKHLN--IQVMVTTGGTSLKDDIM---RLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS------- 276 (485)
Q Consensus 210 ~~~~~~~--~~v~~~~g~~~~~~~~~---~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~------- 276 (485)
.++...+ +.+..++|+.+..++.. .+. ..++|+|+||+.|.+.+... . ..++++||+||||+|++
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid~ 221 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNIDR 221 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccch
Confidence 9887654 56677888887665432 233 35899999999998766542 2 26789999999999986
Q ss_pred ----CCCHHHHHH----HHH----------------------hCCCCCc-EEEEecccchHHHHHHHHhcCCCeEEeecc
Q 011446 277 ----PEFQPSVEQ----LIR----------------------FLPANRQ-ILMFSATFPVTVKDFKDKYLQKPYVINLMD 325 (485)
Q Consensus 277 ----~~~~~~~~~----i~~----------------------~~~~~~~-~i~~SATl~~~~~~~~~~~~~~~~~~~~~~ 325 (485)
.+|.+.+.. ++. .++...+ ++++|||+++. .....++..+..+.+..
T Consensus 222 ~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~~ 299 (1638)
T PRK14701 222 SLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVGS 299 (1638)
T ss_pred hhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEecC
Confidence 478887764 322 2234455 57799999853 11223334554444432
Q ss_pred -ccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhH---HHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHH
Q 011446 326 -ELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNR---VELLAKKITELGYSCFYIHAKMLQDHRNRVFH 401 (485)
Q Consensus 326 -~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~---~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~ 401 (485)
.....++.+.+.......+ ..+..++... ...+||||++++. |+.+++.|...|+++..+||+ |...++
T Consensus 300 ~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~ 372 (1638)
T PRK14701 300 GRSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFD 372 (1638)
T ss_pred CCCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHH
Confidence 2344566666665554444 4566777766 4689999999875 589999999999999999995 889999
Q ss_pred HHhcCCccEEEEc----cccccCCCCCC-CCEEEEcCCCC---ChHHHHHHh-------------hhccccCccccc
Q 011446 402 DFRNGACRNLVCT----DLFTRGIDIQA-VNVVINFDFPK---NSETYLHRV-------------CWIQLSFSLSLP 457 (485)
Q Consensus 402 ~f~~g~~~vlvaT----~~~~~Gidi~~-v~~VI~~~~p~---s~~~~~Qr~-------------GRagR~g~~~~~ 457 (485)
.|++|+.+||||| ++++||||+|+ |++|||+|+|+ |.+.|.|.. |||||.|.....
T Consensus 373 ~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 373 LFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred HHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 9999999999999 58999999999 99999999999 888777766 999998865333
No 61
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.6e-39 Score=299.53 Aligned_cols=311 Identities=19% Similarity=0.238 Sum_probs=229.3
Q ss_pred HHHHHHHc-CCCCC-cHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHH
Q 011446 131 LLMGIFEK-GFERP-SPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQV 207 (485)
Q Consensus 131 l~~~l~~~-~~~~~-~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~ 207 (485)
+.+.|++. |+.++ ++.|+.++..+..+ +||.|++|||+||++||++|+|.. .+ ..||+.|..+|+.++.+.
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~g-ITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GG-ITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CC-eEEEehHHHHHHHHHHHH
Confidence 44555553 66554 78999999988865 689999999999999999999864 12 779999999999988888
Q ss_pred HHHHhccCCceEEEEECCCChHHH------HHHhcCCCeEEEEcchHHHH-----hhhcCccccCCcceEEeeccccccC
Q 011446 208 CKELGKHLNIQVMVTTGGTSLKDD------IMRLYQPVHLLVGTPGRILD-----LSKKGVCILKDCSMLVMDEADKLLS 276 (485)
Q Consensus 208 ~~~~~~~~~~~v~~~~g~~~~~~~------~~~~~~~~~Ili~Tp~~l~~-----~~~~~~~~l~~~~~iViDEah~~~~ 276 (485)
+.++- +.+..+....+..+. .........++|.||+.... +++. ...-..+.++|+|||||+++
T Consensus 81 L~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 81 LKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred HHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-HhhhceeeeEEechhhhHhh
Confidence 87763 222222222222211 22224567899999996543 2221 22233578999999999997
Q ss_pred C--CCHHHHHHH--HHhCCCCCcEEEEecccchHHHHHHHHh--cCCCeEEeecccccc-ccceEEEEeehh---hhhHH
Q 011446 277 P--EFQPSVEQL--IRFLPANRQILMFSATFPVTVKDFKDKY--LQKPYVINLMDELTL-KGITQYYAFVEE---RQKVH 346 (485)
Q Consensus 277 ~--~~~~~~~~i--~~~~~~~~~~i~~SATl~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~ 346 (485)
+ +|+++|..+ ++..-++...+.+|||....+.+.+..- +.+|..+ ...... .|+ +|...-. .+.+.
T Consensus 156 WGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAi--FkTP~FR~NL--FYD~~~K~~I~D~~~ 231 (641)
T KOG0352|consen 156 WGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAI--FKTPTFRDNL--FYDNHMKSFITDCLT 231 (641)
T ss_pred hccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHh--ccCcchhhhh--hHHHHHHHHhhhHhH
Confidence 5 699999888 5555578889999999998888866553 4455332 222211 122 1111111 11122
Q ss_pred HHHHHHHhc-------------CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEE
Q 011446 347 CLNTLFSKL-------------QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 413 (485)
Q Consensus 347 ~l~~l~~~~-------------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlva 413 (485)
.|.++..+. ..+-.||||.|++.|++++-.|...|+++..||+++...+|..+.+.|.+++..||+|
T Consensus 232 ~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~A 311 (641)
T KOG0352|consen 232 VLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAA 311 (641)
T ss_pred hHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEE
Confidence 233322211 1246899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccc
Q 011446 414 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 414 T~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~ 456 (485)
|..+++|+|.|+|++|||+++|.|.+.|+|..|||||.|.-.+
T Consensus 312 T~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~Sy 354 (641)
T KOG0352|consen 312 TVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSY 354 (641)
T ss_pred EeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccc
Confidence 9999999999999999999999999999999999999987654
No 62
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1e-38 Score=342.65 Aligned_cols=315 Identities=16% Similarity=0.172 Sum_probs=213.6
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHH-HHHHhccCCceEEEEEC
Q 011446 146 IQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQV-CKELGKHLNIQVMVTTG 224 (485)
Q Consensus 146 ~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~-~~~~~~~~~~~v~~~~g 224 (485)
+..+.+..+..++.++|+|+||||||++ +|.+......+..+.+++..|++..+..++.. ..++....|..++.-+.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 4556667777778899999999999995 55332222222223667777987666555442 23333233333332221
Q ss_pred CCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCCCCHHH-HHHHHHhCCCCCcEEEEecc
Q 011446 225 GTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPS-VEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 225 ~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~-~~~i~~~~~~~~~~i~~SAT 302 (485)
.+. .....++|+|||||+|++.+..+.. ++++++||||||| ++++.+|... +..++. .+++.|+|+||||
T Consensus 156 ----f~~--~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rpdlKvILmSAT 227 (1294)
T PRK11131 156 ----FND--QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLKVIITSAT 227 (1294)
T ss_pred ----Ccc--ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhh-cCCCceEEEeeCC
Confidence 111 1135789999999999998887544 9999999999999 6889888764 333332 3467899999999
Q ss_pred cchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhh---hHHHHHHHH------HhcCCCcEEEEecChhHHHHH
Q 011446 303 FPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQ---KVHCLNTLF------SKLQINQSIIFCNSVNRVELL 373 (485)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~l~------~~~~~~~~lVf~~~~~~~~~l 373 (485)
++. ..+...+...|. +.+.... . .+..+|....... +.+.+..++ .....+++||||++..+++.+
T Consensus 228 id~--e~fs~~F~~apv-I~V~Gr~-~-pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~l 302 (1294)
T PRK11131 228 IDP--ERFSRHFNNAPI-IEVSGRT-Y-PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDT 302 (1294)
T ss_pred CCH--HHHHHHcCCCCE-EEEcCcc-c-cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHH
Confidence 974 466666665554 3333221 1 2333443322111 122222222 234567999999999999999
Q ss_pred HHHHHHcCCe---EEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCC----------------
Q 011446 374 AKKITELGYS---CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF---------------- 434 (485)
Q Consensus 374 ~~~L~~~~~~---~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~---------------- 434 (485)
++.|.+.++. +.++||+|++++|..+++. .|.++||||||++++|||||+|++||++|.
T Consensus 303 ae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp 380 (1294)
T PRK11131 303 ADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLP 380 (1294)
T ss_pred HHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCC
Confidence 9999987654 7899999999999999986 578999999999999999999999999973
Q ss_pred --CCChHHHHHHhhhccccCcccccc---hHHHHHHHHHhhccccccC
Q 011446 435 --PKNSETYLHRVCWIQLSFSLSLPN---LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 435 --p~s~~~~~Qr~GRagR~g~~~~~~---~~~~~~~~~~~~~~~~~~~ 477 (485)
|.|.++|.||+|||||.+...+.. ...+.+...+...++...+
T Consensus 381 ~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~ 428 (1294)
T PRK11131 381 IEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTN 428 (1294)
T ss_pred eeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCC
Confidence 356789999999999986444443 4444445555555554444
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.3e-38 Score=312.69 Aligned_cols=290 Identities=19% Similarity=0.225 Sum_probs=204.0
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChH---------
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLK--------- 229 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~--------- 229 (485)
+++|.+|||||||++|++|++..+... ...+++|++|+++|+.|+++.+..++.. .++.++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 589999999999999999999886543 3459999999999999999998887532 344444433211
Q ss_pred --HHH-HHh------cCCCeEEEEcchHHHHhhhcCc----cccC--CcceEEeeccccccCCCCHHHHHHHHHhCC-CC
Q 011446 230 --DDI-MRL------YQPVHLLVGTPGRILDLSKKGV----CILK--DCSMLVMDEADKLLSPEFQPSVEQLIRFLP-AN 293 (485)
Q Consensus 230 --~~~-~~~------~~~~~Ili~Tp~~l~~~~~~~~----~~l~--~~~~iViDEah~~~~~~~~~~~~~i~~~~~-~~ 293 (485)
... ... ....+|+++||++++..+.... ..+. ..++||+||||++....+.. +..++..+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 000 000 1235799999999988665411 1111 23789999999987654433 444444443 57
Q ss_pred CcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEee--hhhhhHHHHHHHHHhc-CCCcEEEEecChhHH
Q 011446 294 RQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFV--EERQKVHCLNTLFSKL-QINQSIIFCNSVNRV 370 (485)
Q Consensus 294 ~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~-~~~~~lVf~~~~~~~ 370 (485)
.|+++||||+|..+.++.......+...............+.+... ....+...+..++... ..+++||||++++.|
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRA 235 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHH
Confidence 8999999999977777666554332111111110000111222111 1223445555555543 457999999999999
Q ss_pred HHHHHHHHHcCC--eEEEEcCCCCHHHHHH----HHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHH
Q 011446 371 ELLAKKITELGY--SCFYIHAKMLQDHRNR----VFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHR 444 (485)
Q Consensus 371 ~~l~~~L~~~~~--~~~~~h~~~~~~~r~~----i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr 444 (485)
+.+++.|.+.+. .+..+||++++.+|.. +++.|++|...|||||+++++|+||+ +++||++..| .++|+||
T Consensus 236 ~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr 312 (358)
T TIGR01587 236 QEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQR 312 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHH
Confidence 999999988765 5899999999999976 48899999999999999999999995 8889988766 7899999
Q ss_pred hhhccccCcccc
Q 011446 445 VCWIQLSFSLSL 456 (485)
Q Consensus 445 ~GRagR~g~~~~ 456 (485)
+||+||.|+...
T Consensus 313 ~GR~gR~g~~~~ 324 (358)
T TIGR01587 313 LGRLHRYGRKNG 324 (358)
T ss_pred hccccCCCCCCC
Confidence 999999887543
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8e-38 Score=297.59 Aligned_cols=312 Identities=21% Similarity=0.258 Sum_probs=232.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceE
Q 011446 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v 219 (485)
...++.||......++.+ +++|+.|||-|||+.+++.+..++...+. ++|+++||+.|+.|.+..+.++..-..-.+
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 446889999998888876 89999999999999999888888876543 899999999999999999999987666678
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEE
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 299 (485)
..++|.....+. ...+...+|+|+||..+.+-+..+..++.++++||+|||||..+..-...+.+.......++.+++|
T Consensus 90 ~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 90 AALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred eeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEE
Confidence 888887776644 4445678999999999999999999999999999999999977655555555555556678889999
Q ss_pred ecccc---------------------------------------------hHHHH---HHHHh-------cCCCeEEeec
Q 011446 300 SATFP---------------------------------------------VTVKD---FKDKY-------LQKPYVINLM 324 (485)
Q Consensus 300 SATl~---------------------------------------------~~~~~---~~~~~-------~~~~~~~~~~ 324 (485)
|||+. .+..+ .+... +.+-.++...
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~ 248 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESS 248 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceecc
Confidence 99971 11111 00000 0000000000
Q ss_pred ccccc--------------cc-----------------------------ceEEEEe-----------------------
Q 011446 325 DELTL--------------KG-----------------------------ITQYYAF----------------------- 338 (485)
Q Consensus 325 ~~~~~--------------~~-----------------------------~~~~~~~----------------------- 338 (485)
..... .+ +..++.+
T Consensus 249 ~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~ 328 (542)
T COG1111 249 SPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADP 328 (542)
T ss_pred CcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcCh
Confidence 00000 00 0000000
Q ss_pred ---------------ehhhhhHHHHHHHHH----hcCCCcEEEEecChhHHHHHHHHHHHcCCeEE-EEc--------CC
Q 011446 339 ---------------VEERQKVHCLNTLFS----KLQINQSIIFCNSVNRVELLAKKITELGYSCF-YIH--------AK 390 (485)
Q Consensus 339 ---------------~~~~~~~~~l~~l~~----~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~-~~h--------~~ 390 (485)
.-...|+..+..++. +....++|||++.++.++.+.+.|.+.+..+. .+- .+
T Consensus 329 ~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~G 408 (542)
T COG1111 329 YFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKG 408 (542)
T ss_pred hhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccc
Confidence 001123344444443 33456999999999999999999999887764 222 46
Q ss_pred CCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcccc--Cccc
Q 011446 391 MLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLS--FSLS 455 (485)
Q Consensus 391 ~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~--g~~~ 455 (485)
|++.++.++++.|++|++.|||||+++++|+|||+++.||+|++-.|.-.++||.||+||. |+++
T Consensus 409 MsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~ 475 (542)
T COG1111 409 MSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVV 475 (542)
T ss_pred cCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeEE
Confidence 9999999999999999999999999999999999999999999999999999999999994 5543
No 65
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.4e-37 Score=309.51 Aligned_cols=307 Identities=18% Similarity=0.114 Sum_probs=235.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+++|..+++.++.|+ |+.+.||+|||++|.+|++..... +..++|++||++||.|.++++..+...+++++++
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~ 177 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGLTVGC 177 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 68999999999999999 999999999999999999987654 3489999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHH-HhhhcC-------------------------ccccCCcceEEeecccccc
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRIL-DLSKKG-------------------------VCILKDCSMLVMDEADKLL 275 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~-~~~~~~-------------------------~~~l~~~~~iViDEah~~~ 275 (485)
++|+.+.. .+.....++|+|+|...|- +++... ......+.++||||||.++
T Consensus 178 i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 178 VVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred EeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 99997643 3444568999999998772 222221 1224567899999999765
Q ss_pred -C--------------C---CCHHHHHHHHHhC-----------------------------------------------
Q 011446 276 -S--------------P---EFQPSVEQLIRFL----------------------------------------------- 290 (485)
Q Consensus 276 -~--------------~---~~~~~~~~i~~~~----------------------------------------------- 290 (485)
+ . .+......+...+
T Consensus 256 iDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~ 335 (656)
T PRK12898 256 IDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVR 335 (656)
T ss_pred eccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHH
Confidence 0 0 0000000000000
Q ss_pred ---------CCC-------------------------------------------------------------CcEEEEe
Q 011446 291 ---------PAN-------------------------------------------------------------RQILMFS 300 (485)
Q Consensus 291 ---------~~~-------------------------------------------------------------~~~i~~S 300 (485)
..+ .++.+||
T Consensus 336 ~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmT 415 (656)
T PRK12898 336 QALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMT 415 (656)
T ss_pred HHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhccc
Confidence 000 1567899
Q ss_pred cccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcC--CCcEEEEecChhHHHHHHHHHH
Q 011446 301 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQ--INQSIIFCNSVNRVELLAKKIT 378 (485)
Q Consensus 301 ATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~ 378 (485)
||++....++...|..++..+......... ..+.+.+.+...|...+..++.... ..++||||++++.++.+++.|.
T Consensus 416 GTa~~~~~El~~~y~l~vv~IPt~kp~~r~-~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~ 494 (656)
T PRK12898 416 GTAREVAGELWSVYGLPVVRIPTNRPSQRR-HLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLR 494 (656)
T ss_pred CcChHHHHHHHHHHCCCeEEeCCCCCccce-ecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH
Confidence 999988888888888776555444333222 3333445566778888888776642 5689999999999999999999
Q ss_pred HcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC---CCC-----EEEEcCCCCChHHHHHHhhhccc
Q 011446 379 ELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ---AVN-----VVINFDFPKNSETYLHRVCWIQL 450 (485)
Q Consensus 379 ~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~---~v~-----~VI~~~~p~s~~~~~Qr~GRagR 450 (485)
+.++.+..+||.+. .++..+..|..+...|+||||+++||+||+ +|. +||++++|.|...|.||+||+||
T Consensus 495 ~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGR 572 (656)
T PRK12898 495 EAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGR 572 (656)
T ss_pred HCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccC
Confidence 99999999999865 455555556666667999999999999999 676 99999999999999999999999
Q ss_pred cCcccccc
Q 011446 451 SFSLSLPN 458 (485)
Q Consensus 451 ~g~~~~~~ 458 (485)
.|.-|...
T Consensus 573 qG~~G~s~ 580 (656)
T PRK12898 573 QGDPGSYE 580 (656)
T ss_pred CCCCeEEE
Confidence 99877663
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.3e-37 Score=315.89 Aligned_cols=296 Identities=15% Similarity=0.145 Sum_probs=215.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEE
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~ 220 (485)
..|+++|.++++.++.+++.++++|||+|||+++...+ ...... ...++||++||++|+.|+.+.+.++.......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN-YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 47999999999999999999999999999999765432 222222 2338999999999999999999988754444454
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
.+.+|.... .+.+|+|+|++.+.+... ..++++++||+||||++... .+..++..++...++++||
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGLT 256 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEEe
Confidence 555554432 357899999999876432 23678999999999998654 4566777776677899999
Q ss_pred cccchHHHHHH--HHhcCCCeEEee-------------------ccccccccceE----EE-----EeehhhhhHHHHHH
Q 011446 301 ATFPVTVKDFK--DKYLQKPYVINL-------------------MDELTLKGITQ----YY-----AFVEERQKVHCLNT 350 (485)
Q Consensus 301 ATl~~~~~~~~--~~~~~~~~~~~~-------------------~~~~~~~~~~~----~~-----~~~~~~~~~~~l~~ 350 (485)
||++....... ..++. |....+ ....+...... .+ .......+...+..
T Consensus 257 ATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 99864221111 11111 111111 00000000000 00 00111122233333
Q ss_pred HHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEc-cccccCCCCCCCC
Q 011446 351 LFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT-DLFTRGIDIQAVN 427 (485)
Q Consensus 351 l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT-~~~~~Gidi~~v~ 427 (485)
+.... ...++||||.+.++++.+++.|.+.+.++..+||+++.++|..+++.|++|...||||| +++++|+|+|+++
T Consensus 336 ~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 336 LALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 33322 34689999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred EEEEcCCCCChHHHHHHhhhccccCc
Q 011446 428 VVINFDFPKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 428 ~VI~~~~p~s~~~~~Qr~GRagR~g~ 453 (485)
+||++.++.|...|+||+||++|.+.
T Consensus 416 ~vIl~~p~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 416 HVIFAHPSKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred EEEEecCCcchhhhhhhhhccccCCC
Confidence 99999999999999999999999753
No 67
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.8e-37 Score=326.97 Aligned_cols=326 Identities=22% Similarity=0.350 Sum_probs=262.4
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHH
Q 011446 128 KRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQV 207 (485)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~ 207 (485)
...+..++.+.|+..|+.||.+|+..+.+|+++||+.+||||||++|++|+++.+...... ++|+|.||++||.++.+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 3446888888899999999999999999999999999999999999999999999887766 899999999999999999
Q ss_pred HHHHhccCC--ceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc----CccccCCcceEEeeccccccC---CC
Q 011446 208 CKELGKHLN--IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK----GVCILKDCSMLVMDEADKLLS---PE 278 (485)
Q Consensus 208 ~~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~----~~~~l~~~~~iViDEah~~~~---~~ 278 (485)
+.++....+ +.+..+.|++...+......++++|+++||++|..++.. +...++++++||+||+|.+-. .+
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~ 214 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSE 214 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhH
Confidence 999998887 777888888887777677789999999999999885543 344577899999999997632 22
Q ss_pred CHHHHHHHHH---hCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeeh---------hhhhHH
Q 011446 279 FQPSVEQLIR---FLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE---------ERQKVH 346 (485)
Q Consensus 279 ~~~~~~~i~~---~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 346 (485)
+...+++++. ..+.+.|+|++|||+. +..++...+........+...........+....+ ......
T Consensus 215 vA~llRRL~~~~~~~~~~~q~i~~SAT~~-np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~ 293 (851)
T COG1205 215 VALLLRRLLRRLRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA 293 (851)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEecccc-ChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHH
Confidence 3333344433 3345889999999986 56777777777766654444444444444444333 123444
Q ss_pred HHHHHHHhc--CCCcEEEEecChhHHHHHH----HHHHHcC----CeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 011446 347 CLNTLFSKL--QINQSIIFCNSVNRVELLA----KKITELG----YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 416 (485)
Q Consensus 347 ~l~~l~~~~--~~~~~lVf~~~~~~~~~l~----~~L~~~~----~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~ 416 (485)
.+..+.... ..-++|+|+.++..++.++ ..+...+ ..+..+++++..++|.++...|+.|+..++++|++
T Consensus 294 ~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~A 373 (851)
T COG1205 294 ELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNA 373 (851)
T ss_pred HHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchh
Confidence 445554443 3458999999999999997 4444444 56889999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEcCCCC-ChHHHHHHhhhccccCccc
Q 011446 417 FTRGIDIQAVNVVINFDFPK-NSETYLHRVCWIQLSFSLS 455 (485)
Q Consensus 417 ~~~Gidi~~v~~VI~~~~p~-s~~~~~Qr~GRagR~g~~~ 455 (485)
++-||||.+++.||..+.|. +..++.||.|||||.++-.
T Consensus 374 lelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~ 413 (851)
T COG1205 374 LELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES 413 (851)
T ss_pred hhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc
Confidence 99999999999999999999 9999999999999988433
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=297.66 Aligned_cols=326 Identities=21% Similarity=0.247 Sum_probs=265.2
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
.....++.+++.+..-++..|++.+.|+|..++.+ +++|.|.+|+.+|+||||++..++-+..+...+ .+.|+++|.
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g--~KmlfLvPL 270 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGG--KKMLFLVPL 270 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCC--CeEEEEehh
Confidence 34577889999999999999999999999999986 668999999999999999999988888877633 378999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHH----HHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeecccc
Q 011446 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI----MRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK 273 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~----~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~ 273 (485)
.+||+|.++.+++....+++.+..-.|..-++... ......++|||+|++-+..++..+ ..+.++..|||||+|.
T Consensus 271 VALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHt 349 (830)
T COG1202 271 VALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHT 349 (830)
T ss_pred HHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeee
Confidence 99999999999998899999888877766554332 122346899999999998888876 5689999999999998
Q ss_pred ccCCCCHHHHHHH---HHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHH
Q 011446 274 LLSPEFQPSVEQL---IRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNT 350 (485)
Q Consensus 274 ~~~~~~~~~~~~i---~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 350 (485)
+-+...++.+..+ ++.+.++.|+|.+|||+. +..+++..+...... ....+.+--.|....-+...|.+.+..
T Consensus 350 L~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVg-Np~elA~~l~a~lV~---y~~RPVplErHlvf~~~e~eK~~ii~~ 425 (830)
T COG1202 350 LEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVG-NPEELAKKLGAKLVL---YDERPVPLERHLVFARNESEKWDIIAR 425 (830)
T ss_pred ccchhcccchhhHHHHHHHhCCCCeEEEEEeecC-ChHHHHHHhCCeeEe---ecCCCCChhHeeeeecCchHHHHHHHH
Confidence 8776666666655 455567899999999986 456777766655422 223333333444444457788888888
Q ss_pred HHHhc--------CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCC
Q 011446 351 LFSKL--------QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID 422 (485)
Q Consensus 351 l~~~~--------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gid 422 (485)
+.+.. ..+++|||++|+..|..+++.|...|+++.+||++|+..+|..+...|.++++.++|+|-+++.|+|
T Consensus 426 L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVD 505 (830)
T COG1202 426 LVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVD 505 (830)
T ss_pred HHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCC
Confidence 87643 2369999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEE---EcCC-CCChHHHHHHhhhcccc
Q 011446 423 IQAVNVVI---NFDF-PKNSETYLHRVCWIQLS 451 (485)
Q Consensus 423 i~~v~~VI---~~~~-p~s~~~~~Qr~GRagR~ 451 (485)
+|.-.+|+ -.+. --|+..|.|+.|||||-
T Consensus 506 FPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp 538 (830)
T COG1202 506 FPASQVIFESLAMGIEWLSVREFQQMLGRAGRP 538 (830)
T ss_pred CchHHHHHHHHHcccccCCHHHHHHHhcccCCC
Confidence 99765443 1222 24789999999999993
No 69
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-38 Score=308.06 Aligned_cols=302 Identities=14% Similarity=0.170 Sum_probs=225.1
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCC--ceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 144 SPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 144 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
+.+-.+.+..+.+++.+||.|+||||||++ +-+++.+.+- .+.+.|..|+|..|..++. +++.+.++..+.
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~~~g~I~~TQPRRVAavslA~---RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFASSGKIACTQPRRVAAVSLAK---RVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcccccCCcEEeecCchHHHHHHHH---HHHHHhCCCcCc
Confidence 445667778888888999999999999999 4444544332 1258889999999866653 333344444444
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
.+|....+++... ..+.|.|+|.|.|++.+..+.. |+++++||+|||| |-+..+..-.+.+-+-..+++.++|+||
T Consensus 126 ~VGY~IRFed~ts--~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimS 202 (674)
T KOG0922|consen 126 EVGYTIRFEDSTS--KDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMS 202 (674)
T ss_pred eeeeEEEecccCC--CceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4444444443332 4679999999999998887655 8999999999999 5555554444444444456789999999
Q ss_pred cccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhh---hHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHH
Q 011446 301 ATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQ---KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI 377 (485)
Q Consensus 301 ATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L 377 (485)
||+. ...|...|.+.|.+......++.+.. +......+. .+..+..+....+++.+|||.+++++++.+++.|
T Consensus 203 ATld--a~kfS~yF~~a~i~~i~GR~fPVei~--y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l 278 (674)
T KOG0922|consen 203 ATLD--AEKFSEYFNNAPILTIPGRTFPVEIL--YLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELL 278 (674)
T ss_pred eeec--HHHHHHHhcCCceEeecCCCCceeEE--eccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHH
Confidence 9996 66677766665655544444443322 111222222 2344555666778899999999999999999999
Q ss_pred HHc----C----CeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCC---------------
Q 011446 378 TEL----G----YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF--------------- 434 (485)
Q Consensus 378 ~~~----~----~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~--------------- 434 (485)
.+. . ..+.++||.|+.+++.++|+.-+.|.+||++|||+++++|+|+++.+||+.|+
T Consensus 279 ~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L 358 (674)
T KOG0922|consen 279 RERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSL 358 (674)
T ss_pred HHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccce
Confidence 875 1 13578999999999999999999999999999999999999999999998886
Q ss_pred ---CCChHHHHHHhhhccccCcccccch
Q 011446 435 ---PKNSETYLHRVCWIQLSFSLSLPNL 459 (485)
Q Consensus 435 ---p~s~~~~~Qr~GRagR~g~~~~~~~ 459 (485)
|-|.++..||.|||||+|...++..
T Consensus 359 ~v~~ISkasA~QRaGRAGRt~pGkcyRL 386 (674)
T KOG0922|consen 359 IVVPISKASANQRAGRAGRTGPGKCYRL 386 (674)
T ss_pred eEEechHHHHhhhcccCCCCCCceEEEe
Confidence 5589999999999999988888763
No 70
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-38 Score=305.33 Aligned_cols=319 Identities=15% Similarity=0.152 Sum_probs=243.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
.....+++-.+.+.++..++.+||.|+||||||++....+.+.=... .+.++-|..|+|..|..++. +++..+|.+
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk-~gk~IgcTQPRRVAAmSVAa---RVA~EMgvk 337 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTK-GGKKIGCTQPRRVAAMSVAA---RVAEEMGVK 337 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccccc-CCceEeecCcchHHHHHHHH---HHHHHhCcc
Confidence 34456788899999999999999999999999999444333332222 23358888899999966643 333344555
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCCCCHHHHHHHHHhCCCCCcEE
Q 011446 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPSVEQLIRFLPANRQIL 297 (485)
Q Consensus 219 v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i 297 (485)
.+.-+|.+...+++.. ...-|-|+|.|+|++.+... ..|.++++||||||| |.+..+....+...+...+++.+++
T Consensus 338 LG~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKll 414 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLL 414 (902)
T ss_pred cccccceEEEeccccC--cceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEE
Confidence 5445555555555444 56789999999999987764 458999999999999 7777787777777788888999999
Q ss_pred EEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEe-ehhhhhHHHHHHHHHh---cCCCcEEEEecChhHHHHH
Q 011446 298 MFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAF-VEERQKVHCLNTLFSK---LQINQSIIFCNSVNRVELL 373 (485)
Q Consensus 298 ~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~---~~~~~~lVf~~~~~~~~~l 373 (485)
+.|||+. .++|...|-..|.+......++.. -+|.. .+.+.....+..+++- .+.+.+|||..+.++++..
T Consensus 415 IsSAT~D--AekFS~fFDdapIF~iPGRRyPVd---i~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923|consen 415 ISSATMD--AEKFSAFFDDAPIFRIPGRRYPVD---IFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred eeccccC--HHHHHHhccCCcEEeccCccccee---eecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHH
Confidence 9999986 677776666666555444444432 23333 3334444555555543 4668999999999999988
Q ss_pred HHHHHHc---------CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCC----------
Q 011446 374 AKKITEL---------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF---------- 434 (485)
Q Consensus 374 ~~~L~~~---------~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~---------- 434 (485)
.+.|.++ .+.++++|+.++.+.+.+||+..++|.++|++|||+|+++|+|++|.+||+.|+
T Consensus 490 ~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprt 569 (902)
T KOG0923|consen 490 KENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRT 569 (902)
T ss_pred HHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCc
Confidence 8888763 467889999999999999999999999999999999999999999999998887
Q ss_pred --------CCChHHHHHHhhhccccCcccccchHHHHHHHHHh
Q 011446 435 --------PKNSETYLHRVCWIQLSFSLSLPNLQFMCSMLMYI 469 (485)
Q Consensus 435 --------p~s~~~~~Qr~GRagR~g~~~~~~~~~~~~~~~~~ 469 (485)
|.|.++..||.|||||+|-..++....-++-.+.+
T Consensus 570 GmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eL 612 (902)
T KOG0923|consen 570 GMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHEL 612 (902)
T ss_pred CceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhh
Confidence 55889999999999999999998865555544433
No 71
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.6e-37 Score=321.73 Aligned_cols=318 Identities=22% Similarity=0.269 Sum_probs=245.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHH
Q 011446 127 LKRELLMGIFEKGFERPSPIQEESIPIAL-TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS 205 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~ 205 (485)
+++.+.+-+...++..+++.|++++...+ +++|+||++|||||||+.+++.++..+.+. +.++||+||+++||.+.+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~ 93 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKY 93 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHH
Confidence 56677777777788788888887776555 559999999999999999999999998875 348999999999999999
Q ss_pred HHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHH
Q 011446 206 QVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQ 285 (485)
Q Consensus 206 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~ 285 (485)
+.++ ..+.+|++|...+|+...... ....++|+|+||+++...+.+....+.++++|||||+|.+.+...++.++.
T Consensus 94 ~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 94 EEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred HHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehh
Confidence 9888 557889999999999886642 225789999999999998888877888999999999998877767888888
Q ss_pred HHHhCC---CCCcEEEEecccchHHHHHHHHhcCCCeEEee--ccccccccceEEEEeehhh-------hhHHHHHHHHH
Q 011446 286 LIRFLP---ANRQILMFSATFPVTVKDFKDKYLQKPYVINL--MDELTLKGITQYYAFVEER-------QKVHCLNTLFS 353 (485)
Q Consensus 286 i~~~~~---~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~l~~l~~ 353 (485)
++...+ ..++++++|||+| +..+++.....++..... ............+...... .....+..++.
T Consensus 170 iv~r~~~~~~~~rivgLSATlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~ 248 (766)
T COG1204 170 IVARMRRLNELIRIVGLSATLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLE 248 (766)
T ss_pred HHHHHHhhCcceEEEEEeeecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHH
Confidence 766554 3479999999998 466666655444331111 1111111111222222211 22333444444
Q ss_pred hc-CCCcEEEEecChhHHHHHHHHHHH-------------------------------------cCCeEEEEcCCCCHHH
Q 011446 354 KL-QINQSIIFCNSVNRVELLAKKITE-------------------------------------LGYSCFYIHAKMLQDH 395 (485)
Q Consensus 354 ~~-~~~~~lVf~~~~~~~~~l~~~L~~-------------------------------------~~~~~~~~h~~~~~~~ 395 (485)
.. ..+++||||++++.+...+..|.. ....+.++|++|+.++
T Consensus 249 ~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~ 328 (766)
T COG1204 249 SLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPRED 328 (766)
T ss_pred HHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHH
Confidence 44 445999999999999999998883 0134678999999999
Q ss_pred HHHHHHHHhcCCccEEEEccccccCCCCCCCCEEE----EcC-----CCCChHHHHHHhhhcccc
Q 011446 396 RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI----NFD-----FPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 396 r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI----~~~-----~p~s~~~~~Qr~GRagR~ 451 (485)
|..+.+.|+.|.++||+||..++.|+|+|.-.+|| .|+ .+.++-+++|+.|||||-
T Consensus 329 R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRP 393 (766)
T COG1204 329 RQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRP 393 (766)
T ss_pred HHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCC
Confidence 99999999999999999999999999999877777 455 456789999999999994
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4.5e-36 Score=293.32 Aligned_cols=288 Identities=18% Similarity=0.182 Sum_probs=202.0
Q ss_pred HHHHHHHHHhcCCC--EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccC----CceE
Q 011446 146 IQEESIPIALTGSD--ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHL----NIQV 219 (485)
Q Consensus 146 ~Q~~~i~~i~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~----~~~v 219 (485)
+|.++++.+.++.+ +++++|||||||++|++|++.. ..++++++|+++|+.|+++.+.++...+ +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999998874 7889999999999999998842 2267999999999999999988887543 4556
Q ss_pred EEEECCCChHHHH--------------------HHhcCCCeEEEEcchHHHHhhhcC--------ccccCCcceEEeecc
Q 011446 220 MVTTGGTSLKDDI--------------------MRLYQPVHLLVGTPGRILDLSKKG--------VCILKDCSMLVMDEA 271 (485)
Q Consensus 220 ~~~~g~~~~~~~~--------------------~~~~~~~~Ili~Tp~~l~~~~~~~--------~~~l~~~~~iViDEa 271 (485)
..+.|........ ......+.|+++||+.|..++..+ ...+.++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666642211000 011246789999999987655432 112578999999999
Q ss_pred ccccCCC-----CHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHh--cCCCeEEeecccc-----------------
Q 011446 272 DKLLSPE-----FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY--LQKPYVINLMDEL----------------- 327 (485)
Q Consensus 272 h~~~~~~-----~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~--~~~~~~~~~~~~~----------------- 327 (485)
|.+.... +...+..++.......+++++|||+++.+.+.+... +..+.........
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 9876422 112333444444446799999999998877777654 3333222111100
Q ss_pred --ccccceEEEEeehhhhhHHHHHHHHH-------hcCCCcEEEEecChhHHHHHHHHHHHcC--CeEEEEcCCCCHHHH
Q 011446 328 --TLKGITQYYAFVEERQKVHCLNTLFS-------KLQINQSIIFCNSVNRVELLAKKITELG--YSCFYIHAKMLQDHR 396 (485)
Q Consensus 328 --~~~~~~~~~~~~~~~~~~~~l~~l~~-------~~~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~h~~~~~~~r 396 (485)
..+.+.+.+.. ....+...+..++. ....+++||||++++.++.++..|.+.+ +.+..+||.+++.+|
T Consensus 235 ~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 235 RPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred ceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 00233333322 22233332322222 2345699999999999999999999864 578889999999998
Q ss_pred HHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcc
Q 011446 397 NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQ 449 (485)
Q Consensus 397 ~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRag 449 (485)
.++ ++..|||||+++++|||++.+ +|| ++ |.+.++|+||+||+|
T Consensus 314 ~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 765 367899999999999999987 666 44 899999999999997
No 73
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.8e-37 Score=331.87 Aligned_cols=292 Identities=17% Similarity=0.206 Sum_probs=207.4
Q ss_pred HHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHH-HHHHHhccCCceEEEEECCC
Q 011446 148 EESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ-VCKELGKHLNIQVMVTTGGT 226 (485)
Q Consensus 148 ~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~-~~~~~~~~~~~~v~~~~g~~ 226 (485)
.+.+..+..++.+||+|+||||||++....++. ...+..+.++++.|+|..|..++. ++.++. ..++..+|+.
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle--~~~~~~~~I~~tQPRRlAA~svA~RvA~elg----~~lG~~VGY~ 146 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLE--LGRGSHGLIGHTQPRRLAARTVAQRIAEELG----TPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHH--cCCCCCceEecCCccHHHHHHHHHHHHHHhC----CCcceEEeeE
Confidence 455666667778999999999999974333332 222223477788899998877664 344443 4444444432
Q ss_pred ChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCCCCHHH-HHHHHHhCCCCCcEEEEecccc
Q 011446 227 SLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPS-VEQLIRFLPANRQILMFSATFP 304 (485)
Q Consensus 227 ~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~-~~~i~~~~~~~~~~i~~SATl~ 304 (485)
...+.. ....+.|+|+|+|.|++.+..+. .+.++++||||||| +.++.+|... +..++. .+++.|+|+||||++
T Consensus 147 vR~~~~--~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~-~rpdLKlIlmSATld 222 (1283)
T TIGR01967 147 VRFHDQ--VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP-RRPDLKIIITSATID 222 (1283)
T ss_pred EcCCcc--cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHh-hCCCCeEEEEeCCcC
Confidence 222211 13567999999999999888754 48999999999999 6899888876 444443 456899999999997
Q ss_pred hHHHHHHHHhcCCCeEEeecc-ccccccceEEEEeehh------hhhHH----HHHHHHHhcCCCcEEEEecChhHHHHH
Q 011446 305 VTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEE------RQKVH----CLNTLFSKLQINQSIIFCNSVNRVELL 373 (485)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~----~l~~l~~~~~~~~~lVf~~~~~~~~~l 373 (485)
...+...+...|. +.+.. .++ +..+|..... ..+.. .+..++. ...+++|||+++..+++.+
T Consensus 223 --~~~fa~~F~~apv-I~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l 295 (1283)
T TIGR01967 223 --PERFSRHFNNAPI-IEVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDA 295 (1283)
T ss_pred --HHHHHHHhcCCCE-EEECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHH
Confidence 4566666655554 33332 222 2223322211 11222 2223332 2558999999999999999
Q ss_pred HHHHHHcC---CeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCC---------------
Q 011446 374 AKKITELG---YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP--------------- 435 (485)
Q Consensus 374 ~~~L~~~~---~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p--------------- 435 (485)
++.|.+.+ +.+.++||+|++++|.++|+.+ +..+||||||++++|||||+|++||++|++
T Consensus 296 ~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~ 373 (1283)
T TIGR01967 296 AEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLP 373 (1283)
T ss_pred HHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccC
Confidence 99998764 4688999999999999997754 357999999999999999999999999954
Q ss_pred ---CChHHHHHHhhhccccCcccccc
Q 011446 436 ---KNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 436 ---~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
.|.++|.||+|||||.|...++.
T Consensus 374 ~~~ISkasa~QRaGRAGR~~~G~cyR 399 (1283)
T TIGR01967 374 IEPISQASANQRKGRCGRVAPGICIR 399 (1283)
T ss_pred CccCCHHHHHHHhhhhCCCCCceEEE
Confidence 37789999999999998655554
No 74
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=9.1e-38 Score=289.66 Aligned_cols=271 Identities=27% Similarity=0.487 Sum_probs=213.1
Q ss_pred CceEEEEEcCcHHHHHHHHHHHHHHhccC---CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCc
Q 011446 187 NVIQVVILVPTRELALQTSQVCKELGKHL---NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDC 263 (485)
Q Consensus 187 ~~~~~lil~P~~~la~q~~~~~~~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~ 263 (485)
+.+.++|+-|+++|++|.++.++++-... .++...+.||.-.+.++..+.++.+|+|+||+++++.+.++...+..+
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 45679999999999999999777765444 345557888889999999999999999999999999999998889999
Q ss_pred ceEEeeccccccCCCCHHHHHHHHHhCCC------CCcEEEEecccch-HHHHHHHHhcCCCeEEeeccccccc-cceEE
Q 011446 264 SMLVMDEADKLLSPEFQPSVEQLIRFLPA------NRQILMFSATFPV-TVKDFKDKYLQKPYVINLMDELTLK-GITQY 335 (485)
Q Consensus 264 ~~iViDEah~~~~~~~~~~~~~i~~~~~~------~~~~i~~SATl~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 335 (485)
.++|+|||+-++..++...+..+...++. ..|.+++|||+.. ++..+..+.+.-|.-+.+..+...+ ...+.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 99999999999988888888888766652 4689999999742 2334444444445444444322222 22222
Q ss_pred EEeehh----------------------------------hhhH-----HHHHHHHHhcCCCcEEEEecChhHHHHHHHH
Q 011446 336 YAFVEE----------------------------------RQKV-----HCLNTLFSKLQINQSIIFCNSVNRVELLAKK 376 (485)
Q Consensus 336 ~~~~~~----------------------------------~~~~-----~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~ 376 (485)
...+.. .... ..-...++++...+.||||.++.+|+.|..+
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 222110 0000 1111223445567899999999999999999
Q ss_pred HHHcC---CeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCc
Q 011446 377 ITELG---YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 377 L~~~~---~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~ 453 (485)
|.+.+ +.++++|++..+.+|..-++.|+.+..+.||||+++++|+||.++-++|+..+|....+|+||+||+||+-+
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhh
Confidence 98873 789999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cccc
Q 011446 454 LSLP 457 (485)
Q Consensus 454 ~~~~ 457 (485)
+++.
T Consensus 605 mgla 608 (725)
T KOG0349|consen 605 MGLA 608 (725)
T ss_pred ccee
Confidence 7765
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1e-35 Score=308.37 Aligned_cols=308 Identities=16% Similarity=0.166 Sum_probs=230.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
|. .|+++|..+.+.+..|+ |+.+.||+|||++|++|++..... +..++|++|++.||.|.++++..+...+|++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~ 149 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGLT 149 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 44 79999999999888776 999999999999999999866554 3489999999999999999999999999999
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcC------ccccCCcceEEeeccccccC---------------
Q 011446 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLLS--------------- 276 (485)
Q Consensus 219 v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~------~~~l~~~~~iViDEah~~~~--------------- 276 (485)
++++.|+.+...+.+. ...++|+|+||+.| .+++... ...+..+.++|+||||+++=
T Consensus 150 v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~ 228 (790)
T PRK09200 150 VGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRV 228 (790)
T ss_pred EEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCcc
Confidence 9999999884434333 35689999999988 3333322 23567889999999998760
Q ss_pred -CCCHHHHHHHHHhCCCC--------------------------------------------------------------
Q 011446 277 -PEFQPSVEQLIRFLPAN-------------------------------------------------------------- 293 (485)
Q Consensus 277 -~~~~~~~~~i~~~~~~~-------------------------------------------------------------- 293 (485)
..+......++..+..+
T Consensus 229 ~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~ 308 (790)
T PRK09200 229 QSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVY 308 (790)
T ss_pred ccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 00111111111111000
Q ss_pred -------------------------------------------------------CcEEEEecccchHHHHHHHHhcCCC
Q 011446 294 -------------------------------------------------------RQILMFSATFPVTVKDFKDKYLQKP 318 (485)
Q Consensus 294 -------------------------------------------------------~~~i~~SATl~~~~~~~~~~~~~~~ 318 (485)
.++.+||+|......++..-|.- +
T Consensus 309 ~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l-~ 387 (790)
T PRK09200 309 DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNM-E 387 (790)
T ss_pred CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCC-c
Confidence 04567777776555555444433 2
Q ss_pred eEEeecccc--ccccceEEEEeehhhhhHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHH
Q 011446 319 YVINLMDEL--TLKGITQYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQD 394 (485)
Q Consensus 319 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~ 394 (485)
.+ .++... ...... -..+.....|...+...+.. ....++||||+|++.++.++..|.+.++.+..+||.+.+.
T Consensus 388 v~-~IPt~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~ 465 (790)
T PRK09200 388 VV-QIPTNRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAK 465 (790)
T ss_pred EE-ECCCCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHH
Confidence 22 222111 111111 12234556677777777654 3566999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCccEEEEccccccCCCC---CCCC-----EEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 395 HRNRVFHDFRNGACRNLVCTDLFTRGIDI---QAVN-----VVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 395 ~r~~i~~~f~~g~~~vlvaT~~~~~Gidi---~~v~-----~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
++..+...+..| .|+|||++++||+|| ++|. +||++++|.|...|.||+||+||.|.-|...
T Consensus 466 e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~ 535 (790)
T PRK09200 466 EAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 535 (790)
T ss_pred HHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE
Confidence 888887777766 799999999999999 6998 9999999999999999999999999887553
No 76
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-36 Score=316.15 Aligned_cols=320 Identities=14% Similarity=0.129 Sum_probs=234.2
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEEC
Q 011446 145 PIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTG 224 (485)
Q Consensus 145 ~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g 224 (485)
....+.+.++.+++.+||+||||||||++....+++... ..+..+.|+.|+|..|..+++ ++++.++.+++..+|
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~---RvAeel~~~~G~~VG 127 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAE---RVAEELGEKLGETVG 127 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHH---HHHHHhCCCcCceee
Confidence 345566667777888999999999999997776666544 233488888999988866654 333333444444444
Q ss_pred CCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCCCCHHHHHHH-HHhCCCCCcEEEEecc
Q 011446 225 GTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPSVEQL-IRFLPANRQILMFSAT 302 (485)
Q Consensus 225 ~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~~~~i-~~~~~~~~~~i~~SAT 302 (485)
.....+... ...+.|.|+|.|.|++++..+.. |+.+++||+|||| |.++.++.-.+..- +...+.+.++|+||||
T Consensus 128 Y~iRfe~~~--s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 128 YSIRFESKV--SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred EEEEeeccC--CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 444333322 35679999999999999998666 9999999999999 77777766555444 6777778999999999
Q ss_pred cchHHHHHHHHhcCCCeEEeeccccccccceEEE-Eeehhhh-hHHHHHH---HHHhcCCCcEEEEecChhHHHHHHHHH
Q 011446 303 FPVTVKDFKDKYLQKPYVINLMDELTLKGITQYY-AFVEERQ-KVHCLNT---LFSKLQINQSIIFCNSVNRVELLAKKI 377 (485)
Q Consensus 303 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~---l~~~~~~~~~lVf~~~~~~~~~l~~~L 377 (485)
+. .+.|...+.+.|.+......++.+ .+| ....... ....+.. .......|.+|||+++..+++.+++.|
T Consensus 205 ld--~~rfs~~f~~apvi~i~GR~fPVe---i~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L 279 (845)
T COG1643 205 LD--AERFSAYFGNAPVIEIEGRTYPVE---IRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWL 279 (845)
T ss_pred cC--HHHHHHHcCCCCEEEecCCccceE---EEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHH
Confidence 97 566666666566554444444332 222 1121222 2222222 333446789999999999999999999
Q ss_pred HH----cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCC------------------C
Q 011446 378 TE----LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF------------------P 435 (485)
Q Consensus 378 ~~----~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~------------------p 435 (485)
.+ ....+.++||.|+.+++.++|+.-..|.++||+|||+|++||+||+|++||+.+. |
T Consensus 280 ~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ 359 (845)
T COG1643 280 EKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEP 359 (845)
T ss_pred HhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEE
Confidence 98 3578999999999999999999998898999999999999999999999998886 4
Q ss_pred CChHHHHHHhhhccccCcccccc---hHHHHHHHHHhhccccccC
Q 011446 436 KNSETYLHRVCWIQLSFSLSLPN---LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 436 ~s~~~~~Qr~GRagR~g~~~~~~---~~~~~~~~~~~~~~~~~~~ 477 (485)
.|.++..||.|||||.+-..++. ...+.++..+...++-..+
T Consensus 360 ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtd 404 (845)
T COG1643 360 ISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTD 404 (845)
T ss_pred echhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcc
Confidence 48899999999999998777776 3233355555555544443
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=3.4e-35 Score=301.47 Aligned_cols=308 Identities=14% Similarity=0.115 Sum_probs=221.4
Q ss_pred CcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEE
Q 011446 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVT 222 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~ 222 (485)
++|+|.+++..+..++..|+.++||+|||++|++|++.....+ ..++|++|++.||.|+++++..+...+|+++...
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g---~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTG---KGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcC---CceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 4555555665555555589999999999999999987766543 3689999999999999999999999999999887
Q ss_pred ECCCC---hHHHHHHhcCCCeEEEEcchHH-HHhhhc------CccccCCcceEEeeccccccCCC--------------
Q 011446 223 TGGTS---LKDDIMRLYQPVHLLVGTPGRI-LDLSKK------GVCILKDCSMLVMDEADKLLSPE-------------- 278 (485)
Q Consensus 223 ~g~~~---~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~------~~~~l~~~~~iViDEah~~~~~~-------------- 278 (485)
+++.. ...+.......++|+|+||+.| .+++.. +...+..+.++|+||||+++-+.
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 76521 2223344446899999999999 343322 23446789999999999885100
Q ss_pred --CHHHHHHHHHhCCC----------------------------------------------------------------
Q 011446 279 --FQPSVEQLIRFLPA---------------------------------------------------------------- 292 (485)
Q Consensus 279 --~~~~~~~i~~~~~~---------------------------------------------------------------- 292 (485)
+......+...+..
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 00111111111100
Q ss_pred -----------------------------------------------------CCcEEEEecccchHHHHHHHHhcCCCe
Q 011446 293 -----------------------------------------------------NRQILMFSATFPVTVKDFKDKYLQKPY 319 (485)
Q Consensus 293 -----------------------------------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~ 319 (485)
-.++.+||+|......+|..-|.-+-.
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~ 385 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVV 385 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEE
Confidence 015667888876666666554432221
Q ss_pred EEeeccccccccceEEEEeehhhhhHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHH
Q 011446 320 VINLMDELTLKGITQYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRN 397 (485)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~ 397 (485)
.+.........+.. -..+.....|...+...+.. ....++||||++++.++.++..|.+.++.+..+|+.+.+.++.
T Consensus 386 ~IPt~kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ 464 (762)
T TIGR03714 386 KIPTNKPIIRIDYP-DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQ 464 (762)
T ss_pred EcCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHH
Confidence 11111111111111 12344556677777666654 3556999999999999999999999999999999999998888
Q ss_pred HHHHHHhcCCccEEEEccccccCCCCC---------CCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 398 RVFHDFRNGACRNLVCTDLFTRGIDIQ---------AVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~---------~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
.+...+..| .|+|||++++||+||+ ++.+|+++++|..... .||+||+||.|.-|..
T Consensus 465 ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 465 IIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred HHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 888777766 7999999999999999 9999999999988766 9999999999987755
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=5.9e-35 Score=318.82 Aligned_cols=290 Identities=19% Similarity=0.241 Sum_probs=216.8
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHH
Q 011446 131 LLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 131 l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
+.+.+.+.....|+++|+.+++.++.|++++++||||+|||+ |.+|+...+.. .+++++|++||++|+.|+.+.+..
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHHH
Confidence 334444444457999999999999999999999999999997 56666665543 246899999999999999999999
Q ss_pred HhccCCceE---EEEECCCChHHHH---HHhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-------
Q 011446 211 LGKHLNIQV---MVTTGGTSLKDDI---MRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS------- 276 (485)
Q Consensus 211 ~~~~~~~~v---~~~~g~~~~~~~~---~~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~------- 276 (485)
++...++.+ ..++|+.+..++. ..+. .+++|+|+||++|.+.+.... . +++++|+||||+|++
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd~ 220 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVDK 220 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHHH
Confidence 998776554 3467887765432 2233 358999999999988766421 1 899999999999987
Q ss_pred ----CCCHHH-HHHHH----------------------HhCCCCCc--EEEEecc-cchHHHHHHHHhcCCCeEEeec-c
Q 011446 277 ----PEFQPS-VEQLI----------------------RFLPANRQ--ILMFSAT-FPVTVKDFKDKYLQKPYVINLM-D 325 (485)
Q Consensus 277 ----~~~~~~-~~~i~----------------------~~~~~~~~--~i~~SAT-l~~~~~~~~~~~~~~~~~~~~~-~ 325 (485)
.+|... +..++ ..++...| ++++||| .|..+.. .++.+...+.+. .
T Consensus 221 il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~ 297 (1171)
T TIGR01054 221 LLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGG 297 (1171)
T ss_pred HHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCc
Confidence 567653 44432 23344445 5678999 5544332 223333323332 2
Q ss_pred ccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecCh---hHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHH
Q 011446 326 ELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSV---NRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHD 402 (485)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~---~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~ 402 (485)
.....++.+.+..... +...+..++.... ..+||||++. +.|+.+++.|.+.|+.+..+||+++. .+++.
T Consensus 298 ~~~~r~I~~~~~~~~~--~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~ 370 (1171)
T TIGR01054 298 SDTLRNVVDVYVEDED--LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEK 370 (1171)
T ss_pred cccccceEEEEEeccc--HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHH
Confidence 2334566666554332 2345666776654 5799999999 99999999999999999999999973 68999
Q ss_pred HhcCCccEEEE----ccccccCCCCCC-CCEEEEcCCCC
Q 011446 403 FRNGACRNLVC----TDLFTRGIDIQA-VNVVINFDFPK 436 (485)
Q Consensus 403 f~~g~~~vlva----T~~~~~Gidi~~-v~~VI~~~~p~ 436 (485)
|++|+.+|||| |++++||||+|+ |++||+||+|+
T Consensus 371 Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 371 FAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 99999999999 599999999999 89999999997
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=7.6e-35 Score=297.01 Aligned_cols=307 Identities=17% Similarity=0.172 Sum_probs=229.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+++|..+...+..|+ |+.++||+|||++|.+|++.....+ ..+.|++|+..||.|.++++..+...+|+++.+
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G---~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~ 130 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGL 130 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC---CCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEE
Confidence 68899999988887766 9999999999999999996444332 268999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcC------ccccCCcceEEeeccccccCCC----------------
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLLSPE---------------- 278 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~------~~~l~~~~~iViDEah~~~~~~---------------- 278 (485)
++|+.+..+.... ..++|+|+||++| .+++... ...+..+.++||||+|+++-+.
T Consensus 131 i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ 208 (745)
T TIGR00963 131 ILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE 208 (745)
T ss_pred EeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchH
Confidence 9999886544333 3589999999999 7776654 2457889999999999876100
Q ss_pred CHHHHHHHHHhCCC------------------------------------------------------------------
Q 011446 279 FQPSVEQLIRFLPA------------------------------------------------------------------ 292 (485)
Q Consensus 279 ~~~~~~~i~~~~~~------------------------------------------------------------------ 292 (485)
.......+...+..
T Consensus 209 ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~ 288 (745)
T TIGR00963 209 LYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGE 288 (745)
T ss_pred HHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 00000000110000
Q ss_pred ---------------------------------------------------CCcEEEEecccchHHHHHHHHhcCCCeEE
Q 011446 293 ---------------------------------------------------NRQILMFSATFPVTVKDFKDKYLQKPYVI 321 (485)
Q Consensus 293 ---------------------------------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~~~ 321 (485)
-.++.+||+|......++..-|.-+-..+
T Consensus 289 V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~I 368 (745)
T TIGR00963 289 VVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVV 368 (745)
T ss_pred EEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEe
Confidence 01456788887665555555554332222
Q ss_pred eeccccccccceEEEEeehhhhhHHHHHHHH-Hh-cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHH
Q 011446 322 NLMDELTLKGITQYYAFVEERQKVHCLNTLF-SK-LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV 399 (485)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i 399 (485)
..............+ +.....|...+...+ .. ....++||||++++.++.+++.|.+.++.+..+|+. +..|+..
T Consensus 369 Ptnkp~~R~d~~d~i-~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ 445 (745)
T TIGR00963 369 PTNRPVIRKDLSDLV-YKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAE 445 (745)
T ss_pred CCCCCeeeeeCCCeE-EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHH
Confidence 221111112222122 233444555554433 32 345699999999999999999999999999999999 7889999
Q ss_pred HHHHhcCCccEEEEccccccCCCCCC-------CCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 400 FHDFRNGACRNLVCTDLFTRGIDIQA-------VNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 400 ~~~f~~g~~~vlvaT~~~~~Gidi~~-------v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+..|..+...|+|||++|+||+||+. ..|||+++.|.|...|.||.||+||.|.-|...
T Consensus 446 ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 446 IIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred HHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 99999999999999999999999998 559999999999999999999999999988753
No 80
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2e-34 Score=311.40 Aligned_cols=310 Identities=20% Similarity=0.226 Sum_probs=230.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceE
Q 011446 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v 219 (485)
...+++||.+++..++.+ +++|++|||+|||+++++++...+. ..+.++||++|+++|+.|+.+.++++....+..+
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 89 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKI 89 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceE
Confidence 447899999999988887 8999999999999999988887763 2335899999999999999999998875545678
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEE
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 299 (485)
..++|+..... ........+|+|+||+.+...+......+.++++||+||||++.+......+...+........+++|
T Consensus 90 ~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~l 168 (773)
T PRK13766 90 VVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGL 168 (773)
T ss_pred EEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEE
Confidence 88888776553 34445678999999999988776666778899999999999987654444444444444556779999
Q ss_pred ecccchH---HHHHHHHhc------------------CCCeEEeecc----c------------------------c-cc
Q 011446 300 SATFPVT---VKDFKDKYL------------------QKPYVINLMD----E------------------------L-TL 329 (485)
Q Consensus 300 SATl~~~---~~~~~~~~~------------------~~~~~~~~~~----~------------------------~-~~ 329 (485)
|||+... +......+. ..+....+.. . . ..
T Consensus 169 TaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~ 248 (773)
T PRK13766 169 TASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSI 248 (773)
T ss_pred EcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccC
Confidence 9997322 111111110 0000000000 0 0 00
Q ss_pred c------c-------ceEE-------------------------------------------------------------
Q 011446 330 K------G-------ITQY------------------------------------------------------------- 335 (485)
Q Consensus 330 ~------~-------~~~~------------------------------------------------------------- 335 (485)
. . +...
T Consensus 249 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~ 328 (773)
T PRK13766 249 SPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVE 328 (773)
T ss_pred CCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHh
Confidence 0 0 0000
Q ss_pred -----------EEeehhhhhHHHHHHHHHh----cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCC--------CC
Q 011446 336 -----------YAFVEERQKVHCLNTLFSK----LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAK--------ML 392 (485)
Q Consensus 336 -----------~~~~~~~~~~~~l~~l~~~----~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~--------~~ 392 (485)
........|...+..++.. ....++||||++++.|+.+++.|...++.+..+||. |+
T Consensus 329 ~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~ 408 (773)
T PRK13766 329 DPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMS 408 (773)
T ss_pred CHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCC
Confidence 0000112244444555543 456799999999999999999999999999999886 99
Q ss_pred HHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCc
Q 011446 393 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 393 ~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~ 453 (485)
+.+|..+++.|++|..+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|.
T Consensus 409 ~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~ 469 (773)
T PRK13766 409 QKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE 469 (773)
T ss_pred HHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999654
No 81
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=289.27 Aligned_cols=308 Identities=15% Similarity=0.180 Sum_probs=230.5
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCc--eEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNV--IQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~--~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
+...+..+.+.+..|..++.+||+|+||||||++ +-+++.+.+.+ +-+-|..|+|..|+.++. +++.+++.
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ----l~QyL~edGY~~~GmIGcTQPRRvAAiSVAk---rVa~EM~~ 426 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ----LAQYLYEDGYADNGMIGCTQPRRVAAISVAK---RVAEEMGV 426 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh----hHHHHHhcccccCCeeeecCchHHHHHHHHH---HHHHHhCC
Confidence 4445667778888888899999999999999999 44445444433 355566699999976654 33334444
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCCCCHHHHHHHHHhCCCCCcE
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPSVEQLIRFLPANRQI 296 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~~ 296 (485)
..+..+|....+++... ....|-|+|.|.|++....+. .|.++++||+|||| +.++.+....+.+.+..-+.+.++
T Consensus 427 ~lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKl 503 (1042)
T KOG0924|consen 427 TLGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKL 503 (1042)
T ss_pred ccccccceEEEeeecCC--CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceE
Confidence 44445555544544433 567899999999999776644 48899999999999 777777666666666666779999
Q ss_pred EEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHH---hcCCCcEEEEecChhHHHHH
Q 011446 297 LMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS---KLQINQSIIFCNSVNRVELL 373 (485)
Q Consensus 297 i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~lVf~~~~~~~~~l 373 (485)
|.+|||+. ...|...|.+.|.+......++...+ +....-++.....+...+. ....|.+|||.++.+.++..
T Consensus 504 iVtSATm~--a~kf~nfFgn~p~f~IpGRTyPV~~~--~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t 579 (1042)
T KOG0924|consen 504 IVTSATMD--AQKFSNFFGNCPQFTIPGRTYPVEIM--YTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT 579 (1042)
T ss_pred EEeecccc--HHHHHHHhCCCceeeecCCccceEEE--eccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHH
Confidence 99999986 77888877778877666666654432 1112222222233333332 33568999999999987777
Q ss_pred HHHHHHc----------CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCC---------
Q 011446 374 AKKITEL----------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF--------- 434 (485)
Q Consensus 374 ~~~L~~~----------~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~--------- 434 (485)
+..+... ++.++++|+.|+...+.+||.....|.++|+||||+|+++++||++.+||+.++
T Consensus 580 ~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~ 659 (1042)
T KOG0924|consen 580 CDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPR 659 (1042)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccc
Confidence 6666542 578999999999999999999999999999999999999999999999998886
Q ss_pred ---------CCChHHHHHHhhhccccCcccccchHH
Q 011446 435 ---------PKNSETYLHRVCWIQLSFSLSLPNLQF 461 (485)
Q Consensus 435 ---------p~s~~~~~Qr~GRagR~g~~~~~~~~~ 461 (485)
|.|.++..||.|||||+|-..++....
T Consensus 660 ~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYT 695 (1042)
T KOG0924|consen 660 IGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYT 695 (1042)
T ss_pred cccceeEEEechhccchhhccccCCCCCcceeeehh
Confidence 668999999999999998888776443
No 82
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=298.01 Aligned_cols=331 Identities=15% Similarity=0.161 Sum_probs=252.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHH-HHHHHhccCCceEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ-VCKELGKHLNIQVM 220 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~-~~~~~~~~~~~~v~ 220 (485)
..+.++...+.++.+++.++|+|+||||||++....+++.....+..++++|..|+|..|+.+++ ++.+.+...|-.|+
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 35678899999999999999999999999999999999988777778899999999999999976 56777766675565
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCCCCHHHHHHHHHhCCCCCcEEEE
Q 011446 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPSVEQLIRFLPANRQILMF 299 (485)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~ 299 (485)
.-.+..+.. .....+++||.|.|++.+.. ...+..+++||+||+| |-.+.+|.-.+.+.+...+++.++|+|
T Consensus 253 Yqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILM 325 (924)
T KOG0920|consen 253 YQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILM 325 (924)
T ss_pred EEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEe
Confidence 544433322 23478999999999999888 4558999999999999 667788998888888888899999999
Q ss_pred ecccchHHHHHHHHhcCCCeEEeecccccccc----------------ceEE------------EEeehhhhhHHHHHHH
Q 011446 300 SATFPVTVKDFKDKYLQKPYVINLMDELTLKG----------------ITQY------------YAFVEERQKVHCLNTL 351 (485)
Q Consensus 300 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~------------~~~~~~~~~~~~l~~l 351 (485)
|||+. .+.|...|...|.+......++... ..++ ......+...+++..+
T Consensus 326 SAT~d--ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~l 403 (924)
T KOG0920|consen 326 SATLD--AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDL 403 (924)
T ss_pred eeecc--hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHH
Confidence 99987 5666666666665554333322110 0011 0001112334444444
Q ss_pred HH----hcCCCcEEEEecChhHHHHHHHHHHHc-------CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccC
Q 011446 352 FS----KLQINQSIIFCNSVNRVELLAKKITEL-------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 420 (485)
Q Consensus 352 ~~----~~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~G 420 (485)
+. ....+.+|||.|++.++..+++.|... .+-+.++|+.|+.+++..+|...+.|.++||+||++|+++
T Consensus 404 i~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETS 483 (924)
T KOG0920|consen 404 IEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETS 483 (924)
T ss_pred HHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhc
Confidence 43 345679999999999999999999752 3678899999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCC------------------ChHHHHHHhhhccccCcccccc---hHHHHHHHH-HhhccccccCC
Q 011446 421 IDIQAVNVVINFDFPK------------------NSETYLHRVCWIQLSFSLSLPN---LQFMCSMLM-YICFTDRLVDL 478 (485)
Q Consensus 421 idi~~v~~VI~~~~p~------------------s~~~~~Qr~GRagR~g~~~~~~---~~~~~~~~~-~~~~~~~~~~~ 478 (485)
|+|+||.+||+.+.-+ |.++..||.|||||.-...++. ..+...... |...+..+.++
T Consensus 484 ITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL 563 (924)
T KOG0920|consen 484 ITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPL 563 (924)
T ss_pred ccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChH
Confidence 9999999999777532 6778899999999976555554 333333333 66666666665
Q ss_pred CCC
Q 011446 479 EGL 481 (485)
Q Consensus 479 ~~l 481 (485)
+++
T Consensus 564 ~~l 566 (924)
T KOG0920|consen 564 EEL 566 (924)
T ss_pred HHh
Confidence 543
No 83
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=283.54 Aligned_cols=307 Identities=22% Similarity=0.274 Sum_probs=218.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceE
Q 011446 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v 219 (485)
.-.++.||.+.+..++ ++++||++|||+|||.++...++.++...+.+ ++|+++|++.|+.|+...+..++.. ..+
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~-KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~ 135 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKG-KVVFLAPTRPLVNQQIACFSIYLIP--YSV 135 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcc-eEEEeeCCchHHHHHHHHHhhccCc--ccc
Confidence 3368999999999999 99999999999999999999999999877664 9999999999999988766766654 556
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccc-cCCcceEEeeccccccCCCCHHH-HHHHHHhCCCCCcEE
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCI-LKDCSMLVMDEADKLLSPEFQPS-VEQLIRFLPANRQIL 297 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~-l~~~~~iViDEah~~~~~~~~~~-~~~i~~~~~~~~~~i 297 (485)
....|+.........+....+|+|+||..+.+-+++.... |+.+.++||||||+.....-... +..++.......|+|
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEE
Confidence 6666665444444456678899999999999988876433 58899999999998765544444 445555555555999
Q ss_pred EEecccchHHHH--------------------------------------------------HHHHhcC-----------
Q 011446 298 MFSATFPVTVKD--------------------------------------------------FKDKYLQ----------- 316 (485)
Q Consensus 298 ~~SATl~~~~~~--------------------------------------------------~~~~~~~----------- 316 (485)
++|||+..+... ++..++.
T Consensus 216 gLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~ 295 (746)
T KOG0354|consen 216 GLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEIS 295 (746)
T ss_pred EEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccc
Confidence 999997211111 0000000
Q ss_pred CCe---EE-ee-ccccccc--------------------------cce---------EEEEee-----------------
Q 011446 317 KPY---VI-NL-MDELTLK--------------------------GIT---------QYYAFV----------------- 339 (485)
Q Consensus 317 ~~~---~~-~~-~~~~~~~--------------------------~~~---------~~~~~~----------------- 339 (485)
+.. .. .. ......+ .+. .++...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~ 375 (746)
T KOG0354|consen 296 DKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRN 375 (746)
T ss_pred cccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHH
Confidence 000 00 00 0000000 000 000000
Q ss_pred ----------------hhhhhHHHHHHHHH----hcCCCcEEEEecChhHHHHHHHHHHHc---CCeEEEEc--------
Q 011446 340 ----------------EERQKVHCLNTLFS----KLQINQSIIFCNSVNRVELLAKKITEL---GYSCFYIH-------- 388 (485)
Q Consensus 340 ----------------~~~~~~~~l~~l~~----~~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h-------- 388 (485)
....|+..+..++. ..+..++||||.+++.|..|...|.+. ++....+-
T Consensus 376 ~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~ 455 (746)
T KOG0354|consen 376 FTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQS 455 (746)
T ss_pred HHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccc
Confidence 00122333333332 224458999999999999999999842 33333332
Q ss_pred CCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcccc
Q 011446 389 AKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 389 ~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~ 451 (485)
.+|++.++.++++.|++|+..|||||+++++|+||+.++.||-||.-.|+-.++||.|| ||.
T Consensus 456 ~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa 517 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA 517 (746)
T ss_pred cccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc
Confidence 37999999999999999999999999999999999999999999999999999999999 995
No 84
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.9e-33 Score=284.58 Aligned_cols=292 Identities=16% Similarity=0.150 Sum_probs=203.1
Q ss_pred CCcHHHHHHHHHHhcC---CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 142 RPSPIQEESIPIALTG---SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~---~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
.++|||.+++..+..+ +..++++|||+|||++.+..+. .+. .++|||||+..|+.||.+.+.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l~-----k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TVK-----KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-HhC-----CCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 6899999999988843 3689999999999999765443 322 378999999999999999999886544456
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC--------ccccCCcceEEeeccccccCCCCHHHHHHHHHhC
Q 011446 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--------VCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL 290 (485)
Q Consensus 219 v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~--------~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~ 290 (485)
+..++|+.... ......|+|+|+..+.....+. .+.-..+++||+||||++.. ..+..++..+
T Consensus 329 I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIV 399 (732)
T ss_pred EEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhc
Confidence 66666654321 1234689999999875422111 11124688999999998754 4455566666
Q ss_pred CCCCcEEEEecccchHH--HHHHHHhcCCCeEEeecc-ccc-cccceEE------E--------------------Eeeh
Q 011446 291 PANRQILMFSATFPVTV--KDFKDKYLQKPYVINLMD-ELT-LKGITQY------Y--------------------AFVE 340 (485)
Q Consensus 291 ~~~~~~i~~SATl~~~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~------~--------------------~~~~ 340 (485)
.... .+++|||+...- ...+..++. |......- +.. ..-+..+ . ....
T Consensus 400 ~a~~-RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 400 QAHC-KLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred CcCc-EEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 5443 599999984211 111111221 22211100 000 0000000 0 0011
Q ss_pred hhhhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcC-CccEEEEcccc
Q 011446 341 ERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG-ACRNLVCTDLF 417 (485)
Q Consensus 341 ~~~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g-~~~vlvaT~~~ 417 (485)
...|...+..++..+ ...++||||.+...++.+++.| .+..+||++++.+|..+++.|+.| .+++||+|+++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVg 552 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVG 552 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEeccc
Confidence 223455555566654 5569999999999999998887 356789999999999999999875 78999999999
Q ss_pred ccCCCCCCCCEEEEcCCC-CChHHHHHHhhhccccCccc
Q 011446 418 TRGIDIQAVNVVINFDFP-KNSETYLHRVCWIQLSFSLS 455 (485)
Q Consensus 418 ~~Gidi~~v~~VI~~~~p-~s~~~~~Qr~GRagR~g~~~ 455 (485)
.+|||+|++++||+++.| .|...|+||+||++|.+..+
T Consensus 553 deGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~ 591 (732)
T TIGR00603 553 DTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGS 591 (732)
T ss_pred ccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCC
Confidence 999999999999999988 59999999999999986443
No 85
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=279.00 Aligned_cols=307 Identities=23% Similarity=0.304 Sum_probs=232.7
Q ss_pred cCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhcc-------CCceEEEEEcCcHHHHHHHHHHHH
Q 011446 138 KGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQD-------NNVIQVVILVPTRELALQTSQVCK 209 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~-------~~~~~~lil~P~~~la~q~~~~~~ 209 (485)
.+|..++.+|++++|.+++. .++||+||||||||-.|++.++..+.+. .+..++|||+|+++||..+.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 35888999999999999864 6899999999999999999999988751 245699999999999999998888
Q ss_pred HHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC---ccccCCcceEEeeccccccCCCCHHHHHHH
Q 011446 210 ELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG---VCILKDCSMLVMDEADKLLSPEFQPSVEQL 286 (485)
Q Consensus 210 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~---~~~l~~~~~iViDEah~~~~~~~~~~~~~i 286 (485)
+.....|+.|..++|+....... ...++|+|+||+++.-...++ ...++.+.+|||||+|.+ ..+.++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHHHH
Confidence 88888899999999998866543 246899999999986655543 234677899999999954 67788888888
Q ss_pred HHhC-------CCCCcEEEEecccchHHHHHHHHhcCCC--eEEeeccccccccceEEEEeehhh---hhHH-----HHH
Q 011446 287 IRFL-------PANRQILMFSATFPVTVKDFKDKYLQKP--YVINLMDELTLKGITQYYAFVEER---QKVH-----CLN 349 (485)
Q Consensus 287 ~~~~-------~~~~~~i~~SATl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~l~ 349 (485)
+.+. ...++++++|||+| +.++.+..+.-+| .++.....+.+-.+.+.+.-.... .... +..
T Consensus 262 VaRtlr~vessqs~IRivgLSATlP-N~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~ 340 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLP-NYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYD 340 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCC-CHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHH
Confidence 6554 45788999999998 4555555444443 233334444444444443333222 1111 222
Q ss_pred HHHHhc-CCCcEEEEecChhHHHHHHHHHHHc-----------------------CCeEEEEcCCCCHHHHHHHHHHHhc
Q 011446 350 TLFSKL-QINQSIIFCNSVNRVELLAKKITEL-----------------------GYSCFYIHAKMLQDHRNRVFHDFRN 405 (485)
Q Consensus 350 ~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~-----------------------~~~~~~~h~~~~~~~r~~i~~~f~~ 405 (485)
.+.+.. ...+++|||.++..+...++.|.+. .......|++|...+|.-+.+.|..
T Consensus 341 kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~ 420 (1230)
T KOG0952|consen 341 KVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE 420 (1230)
T ss_pred HHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc
Confidence 223333 3458999999999999999988763 1346788999999999999999999
Q ss_pred CCccEEEEccccccCCCCCCCCEEEEcCCC-----C------ChHHHHHHhhhccc
Q 011446 406 GACRNLVCTDLFTRGIDIQAVNVVINFDFP-----K------NSETYLHRVCWIQL 450 (485)
Q Consensus 406 g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p-----~------s~~~~~Qr~GRagR 450 (485)
|..+||+||..++-|+++|+- +||.-+.+ + ++.+.+|..|||||
T Consensus 421 G~i~vL~cTaTLAwGVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQifGRAGR 475 (1230)
T KOG0952|consen 421 GHIKVLCCTATLAWGVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGR 475 (1230)
T ss_pred CCceEEEecceeeeccCCcce-EEEecCCcccccccCceeeehHHHHHHHHhccCC
Confidence 999999999999999999965 45533332 2 46778999999999
No 86
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=1e-30 Score=276.05 Aligned_cols=310 Identities=21% Similarity=0.278 Sum_probs=206.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccC--Cc
Q 011446 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHL--NI 217 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~--~~ 217 (485)
...|+|+|..+........-+||.+|||+|||.+++.++...+.. +...+++|..||++++.++++.+.++.... ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 347999999886554445568999999999999987776654443 334489999999999999999877644322 34
Q ss_pred eEEEEECCCChHHHH---------------------HHhc---C---CCeEEEEcchHHHHhhhc-CccccCC----cce
Q 011446 218 QVMVTTGGTSLKDDI---------------------MRLY---Q---PVHLLVGTPGRILDLSKK-GVCILKD----CSM 265 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~---------------------~~~~---~---~~~Ili~Tp~~l~~~~~~-~~~~l~~----~~~ 265 (485)
.+...+|........ ..+. + -..|+|||.++++..... ....+.. -++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 566777765422110 0010 1 268999999998853322 1112222 258
Q ss_pred EEeeccccccCCCCHHHHHHHHHhC-CCCCcEEEEecccchHHHHHHHH-hcCC-C------e-EEeecc-----ccccc
Q 011446 266 LVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDK-YLQK-P------Y-VINLMD-----ELTLK 330 (485)
Q Consensus 266 iViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SATl~~~~~~~~~~-~~~~-~------~-~~~~~~-----~~~~~ 330 (485)
|||||+|.+ +......+..++..+ .....+|+||||+|....+.+.. +... + + .+.... .....
T Consensus 443 vIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 443 LIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 999999975 333344455555443 34677999999999877654333 2111 0 0 000000 00000
Q ss_pred ------cceEEEEe--e--hh-hhhHHHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcC---CeEEEEcCCCCHHH
Q 011446 331 ------GITQYYAF--V--EE-RQKVHCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELG---YSCFYIHAKMLQDH 395 (485)
Q Consensus 331 ------~~~~~~~~--~--~~-~~~~~~l~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~ 395 (485)
.....+.. . .. .....++..+++.. ..+++||||||++.|+.+++.|.+.. ..+..+||.++..+
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 00111111 1 10 12234445555443 45689999999999999999999764 67999999999999
Q ss_pred H----HHHHHHH-hcCC---ccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcc
Q 011446 396 R----NRVFHDF-RNGA---CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSL 454 (485)
Q Consensus 396 r----~~i~~~f-~~g~---~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~ 454 (485)
| +++++.| ++|+ ..|||||+++++|+|| +++++|....| ++.++||+||+||.++.
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9 4577788 6666 4799999999999999 68999988888 68999999999998874
No 87
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=6.2e-31 Score=238.66 Aligned_cols=200 Identities=47% Similarity=0.808 Sum_probs=184.0
Q ss_pred ccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc--CCceEEEEEcCcHH
Q 011446 122 FEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD--NNVIQVVILVPTRE 199 (485)
Q Consensus 122 ~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~P~~~ 199 (485)
|.++++++.+.+.+.+.|+..|+++|.++++.+.+++++++++|||+|||++|++|++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6788999999999999999999999999999999999999999999999999999999998876 46679999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC
Q 011446 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (485)
Q Consensus 200 la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (485)
|+.|+...+..+....++.+..++|+....+....+..+++|+|+||+.+...+.+....+.+++++|+||+|.+.+.++
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999988888899999999988777667666899999999999998888777788999999999999888889
Q ss_pred HHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEE
Q 011446 280 QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVI 321 (485)
Q Consensus 280 ~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~ 321 (485)
...+..++..++.+++++++|||+++.+..+...++.+|..+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999999999999999888654
No 88
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.98 E-value=1.9e-30 Score=275.60 Aligned_cols=311 Identities=15% Similarity=0.160 Sum_probs=205.8
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceE
Q 011446 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v 219 (485)
.|.|||.+++..++.. ..+++..++|.|||..+.+.+-..+.. +...++|||||. .|..||...+.+.+ ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 4899999998877654 369999999999999976655554443 334489999998 78888877665443 3444
Q ss_pred EEEECCCChHH--HHHHhcCCCeEEEEcchHHHHhhhc-CccccCCcceEEeeccccccCC--CCHHHHHHHHHhCCCCC
Q 011446 220 MVTTGGTSLKD--DIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEADKLLSP--EFQPSVEQLIRFLPANR 294 (485)
Q Consensus 220 ~~~~g~~~~~~--~~~~~~~~~~Ili~Tp~~l~~~~~~-~~~~l~~~~~iViDEah~~~~~--~~~~~~~~i~~~~~~~~ 294 (485)
..+.++..... .........+++|||.+.+...-.. ....-..+++||+||||++... .-...+..+........
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 33332221110 0001223468999999987652110 1112246899999999998632 12223433333223344
Q ss_pred cEEEEecccch-------------------HHHHHH------------------------------HHhcCCCe------
Q 011446 295 QILMFSATFPV-------------------TVKDFK------------------------------DKYLQKPY------ 319 (485)
Q Consensus 295 ~~i~~SATl~~-------------------~~~~~~------------------------------~~~~~~~~------ 319 (485)
.++++|||+-. +...|. ..++....
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 68999999610 000000 00110000
Q ss_pred -----------------------------EEee-c---cccccccceEEEE-----------------------------
Q 011446 320 -----------------------------VINL-M---DELTLKGITQYYA----------------------------- 337 (485)
Q Consensus 320 -----------------------------~~~~-~---~~~~~~~~~~~~~----------------------------- 337 (485)
.+.- . ..++......+..
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 0000 0 0000000000000
Q ss_pred -------eehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHH-HHcCCeEEEEcCCCCHHHHHHHHHHHhcC--C
Q 011446 338 -------FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI-TELGYSCFYIHAKMLQDHRNRVFHDFRNG--A 407 (485)
Q Consensus 338 -------~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L-~~~~~~~~~~h~~~~~~~r~~i~~~f~~g--~ 407 (485)
......|...+..+++.....++||||+++..+..+++.| ...|+.+..+||+|++.+|.++++.|+++ .
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~ 546 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG 546 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC
Confidence 0011234556777777777789999999999999999999 45699999999999999999999999974 5
Q ss_pred ccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 408 CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 408 ~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
..|||||+++++|+|++.+++||+||+|+++..|.||+||+||.|+.+..
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V 596 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDI 596 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceE
Confidence 89999999999999999999999999999999999999999999986653
No 89
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=2.1e-29 Score=264.28 Aligned_cols=296 Identities=17% Similarity=0.192 Sum_probs=205.4
Q ss_pred CCcHHHHHHHHHHhcC---CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 142 RPSPIQEESIPIALTG---SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~---~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
.+++.|.++++.+.++ +++++.|+||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+++.+ +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999974 789999999999999998887776654 3489999999999999999888754 567
Q ss_pred EEEEECCCChHHHHHH----hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC---CHHHHHH--HHHh
Q 011446 219 VMVTTGGTSLKDDIMR----LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE---FQPSVEQ--LIRF 289 (485)
Q Consensus 219 v~~~~g~~~~~~~~~~----~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~---~~~~~~~--i~~~ 289 (485)
+..++|+.+..+.... .....+|+|+|++.+. ..+.++++||+||+|...-.. ....... +...
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra 290 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA 290 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh
Confidence 8889988776544322 2356899999998763 347789999999999764321 1111122 2334
Q ss_pred CCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhh----------hhHHHHHHHHHhcC-CC
Q 011446 290 LPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEER----------QKVHCLNTLFSKLQ-IN 358 (485)
Q Consensus 290 ~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~l~~~~~-~~ 358 (485)
...+.++|++|||++.+....+. -.....+.+........... ...++.. -...++..+.+... ..
T Consensus 291 ~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~-v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~ 367 (679)
T PRK05580 291 KLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPE-VEIIDMRELLRGENGSFLSPPLLEAIKQRLERGE 367 (679)
T ss_pred hccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCe-EEEEechhhhhhcccCCCCHHHHHHHHHHHHcCC
Confidence 45788999999998744433322 11222222222211111110 1111100 01122233333333 33
Q ss_pred cEEEEecCh------------------------------------------------------------hHHHHHHHHHH
Q 011446 359 QSIIFCNSV------------------------------------------------------------NRVELLAKKIT 378 (485)
Q Consensus 359 ~~lVf~~~~------------------------------------------------------------~~~~~l~~~L~ 378 (485)
++|||+|.+ ..++.+++.|.
T Consensus 368 qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~ 447 (679)
T PRK05580 368 QVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELA 447 (679)
T ss_pred eEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHH
Confidence 788887752 14678888888
Q ss_pred Hc--CCeEEEEcCCCC--HHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEE--EcCCCCCh----------HHHH
Q 011446 379 EL--GYSCFYIHAKML--QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI--NFDFPKNS----------ETYL 442 (485)
Q Consensus 379 ~~--~~~~~~~h~~~~--~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI--~~~~p~s~----------~~~~ 442 (485)
+. +.++..+|+++. ..+++++++.|++|+.+|||+|+++++|+|+|+|++|+ +.|.+.+. +.|.
T Consensus 448 ~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~ 527 (679)
T PRK05580 448 ELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLT 527 (679)
T ss_pred HhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHH
Confidence 76 788999999986 46789999999999999999999999999999999985 44544332 5789
Q ss_pred HHhhhccccCc
Q 011446 443 HRVCWIQLSFS 453 (485)
Q Consensus 443 Qr~GRagR~g~ 453 (485)
|++||+||.+.
T Consensus 528 q~~GRagR~~~ 538 (679)
T PRK05580 528 QVAGRAGRAEK 538 (679)
T ss_pred HHHhhccCCCC
Confidence 99999999543
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=7e-31 Score=264.58 Aligned_cols=295 Identities=19% Similarity=0.207 Sum_probs=225.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.+-.+|++||-++..|..|+|.|+|.+|||+++..++...-. .+.+++|.+|-++|..|.++.++..+...| .
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----L 369 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---HMTRTIYTSPIKALSNQKFRDFKETFGDVG----L 369 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---hccceEecchhhhhccchHHHHHHhccccc----e
Confidence 577899999999999999999999999999998776543322 344899999999999999999988776554 6
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
++|+..+. ..+.++|+|.+.|..++.++...++++.+||+||+|.+-+...+..+++++-.+|.+.++|++||
T Consensus 370 lTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSA 442 (1248)
T KOG0947|consen 370 LTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSA 442 (1248)
T ss_pred eecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEec
Confidence 88887766 67899999999999999999888999999999999999888889999999999999999999999
Q ss_pred ccchHHHHHHHHhcC--CCeEEeeccccccccceEEEEeeh---------------------------------------
Q 011446 302 TFPVTVKDFKDKYLQ--KPYVINLMDELTLKGITQYYAFVE--------------------------------------- 340 (485)
Q Consensus 302 Tl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 340 (485)
|+|. ..+|+..... ...+..+.....+-.+.++...-.
T Consensus 443 TVPN-~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~ 521 (1248)
T KOG0947|consen 443 TVPN-TLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDAR 521 (1248)
T ss_pred cCCC-hHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccc
Confidence 9985 4555554322 111211111111111111111000
Q ss_pred --------------------------hhhh---HHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc-----------
Q 011446 341 --------------------------ERQK---VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL----------- 380 (485)
Q Consensus 341 --------------------------~~~~---~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------- 380 (485)
...+ .-.+...+.....-+++|||-+++.|+..++.|...
T Consensus 522 ~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV 601 (1248)
T KOG0947|consen 522 GGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEV 601 (1248)
T ss_pred ccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHH
Confidence 0011 111222233334458999999999999999999761
Q ss_pred ----------------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEc
Q 011446 381 ----------------------------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF 432 (485)
Q Consensus 381 ----------------------------~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~ 432 (485)
...+..+||++-+-.++-+.-.|..|-.+||+||..+++|+|.|.-.+|+ -
T Consensus 602 ~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF-~ 680 (1248)
T KOG0947|consen 602 HLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF-S 680 (1248)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe-e
Confidence 23578899999999999999999999999999999999999999766665 3
Q ss_pred CCC---------CChHHHHHHhhhccccC
Q 011446 433 DFP---------KNSETYLHRVCWIQLSF 452 (485)
Q Consensus 433 ~~p---------~s~~~~~Qr~GRagR~g 452 (485)
.+- -.+..|.|++|||||.|
T Consensus 681 Sl~KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 681 SLRKHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred ehhhccCcceeecCChhHHhhhccccccc
Confidence 332 25689999999999954
No 91
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.9e-31 Score=263.95 Aligned_cols=300 Identities=16% Similarity=0.186 Sum_probs=210.7
Q ss_pred HHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC---CceEEEEEcCcHHHHHHHHH-HHHHHhccCCceEEEEE
Q 011446 148 EESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---NVIQVVILVPTRELALQTSQ-VCKELGKHLNIQVMVTT 223 (485)
Q Consensus 148 ~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~P~~~la~q~~~-~~~~~~~~~~~~v~~~~ 223 (485)
.+++.+|.++..+||+|+||||||++...++++.-.... .++-+-|..|+|..|..++. ++.+++. ++-.|...+
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqI 340 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQI 340 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEEE
Confidence 456777777888999999999999997666665533221 23356677899999887765 5555554 555554433
Q ss_pred CCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCCCCH----HHHHHHHHhCC------C
Q 011446 224 GGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQ----PSVEQLIRFLP------A 292 (485)
Q Consensus 224 g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~----~~~~~i~~~~~------~ 292 (485)
.... .....+.|.++|.|.|++.+..+.+ |..|++||||||| |-++.+.. ..+..+-..+. .
T Consensus 341 Rfd~------ti~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 341 RFDG------TIGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred Eecc------ccCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 2111 1124678999999999999888544 8999999999999 44443322 11111111111 2
Q ss_pred CCcEEEEecccchHHHHHHH--HhcC-CCeEEeeccccccccceEEEEeehhh---hhHHHHHHHHHhcCCCcEEEEecC
Q 011446 293 NRQILMFSATFPVTVKDFKD--KYLQ-KPYVINLMDELTLKGITQYYAFVEER---QKVHCLNTLFSKLQINQSIIFCNS 366 (485)
Q Consensus 293 ~~~~i~~SATl~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~lVf~~~ 366 (485)
..++|+||||+. +.+|.. .++. .|-++.+... ..+-.-|+-.....+ ..+.....+.++++.|.+|||+.+
T Consensus 414 pLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdAR-QfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTG 490 (1172)
T KOG0926|consen 414 PLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDAR-QFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTG 490 (1172)
T ss_pred ceeEEEEeeeEE--ecccccCceecCCCCceeeeecc-cCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeC
Confidence 568999999986 455542 2222 2223333221 111111222222222 233455667788899999999999
Q ss_pred hhHHHHHHHHHHH-------------------------------------------------------------------
Q 011446 367 VNRVELLAKKITE------------------------------------------------------------------- 379 (485)
Q Consensus 367 ~~~~~~l~~~L~~------------------------------------------------------------------- 379 (485)
+.+++.+++.|++
T Consensus 491 QqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~ 570 (1172)
T KOG0926|consen 491 QQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNA 570 (1172)
T ss_pred hHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhc
Confidence 9999999999986
Q ss_pred --------------------------------cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCC
Q 011446 380 --------------------------------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN 427 (485)
Q Consensus 380 --------------------------------~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~ 427 (485)
...-++++|+-++.+.+.++|+.-+.|.+-|+||||+|+++++||++.
T Consensus 571 ~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIk 650 (1172)
T KOG0926|consen 571 LADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIK 650 (1172)
T ss_pred cccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCee
Confidence 024588999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC------------------ChHHHHHHhhhccccCcccccc
Q 011446 428 VVINFDFPK------------------NSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 428 ~VI~~~~p~------------------s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+||+.|..+ |.++.-||+|||||+|-..++.
T Consensus 651 YVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYR 699 (1172)
T KOG0926|consen 651 YVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYR 699 (1172)
T ss_pred EEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceee
Confidence 999888754 6677899999999999888775
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=7.6e-30 Score=255.49 Aligned_cols=292 Identities=20% Similarity=0.265 Sum_probs=202.8
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011446 141 ERPSPIQEESIPIALT----GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (485)
..++++|.+++..+.. .+..++++|||+|||.+++..+-.. .. .+|||||+.+|+.|+.+.+.......
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-~~-----~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-KR-----STLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-cC-----CEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 3699999999999998 7889999999999999865544332 21 49999999999999986665554322
Q ss_pred ceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcE
Q 011446 217 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQI 296 (485)
Q Consensus 217 ~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 296 (485)
..++.+.|+.... .. ..|.|+|...+.............+++||+||||++....+. .+...+.....+
T Consensus 108 ~~~g~~~~~~~~~------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~~~~~~ 176 (442)
T COG1061 108 DEIGIYGGGEKEL------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLSAAYPR 176 (442)
T ss_pred cccceecCceecc------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhhcccce
Confidence 2334444433222 11 479999999987742111222347999999999998665544 333333333328
Q ss_pred EEEecccchHH--------------------HHHHH-HhcCCCeEEeeccccccccceEEE-------------------
Q 011446 297 LMFSATFPVTV--------------------KDFKD-KYLQKPYVINLMDELTLKGITQYY------------------- 336 (485)
Q Consensus 297 i~~SATl~~~~--------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------------- 336 (485)
++||||++... .+++. .++..+.+..+...........+.
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred eeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 99999975211 11111 122222222211111100000000
Q ss_pred -----EeehhhhhHHHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccE
Q 011446 337 -----AFVEERQKVHCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRN 410 (485)
Q Consensus 337 -----~~~~~~~~~~~l~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~v 410 (485)
.......+...+..++..+ ...+++|||.+..++..++..|...++ +..+.+..+..+|..+++.|+.|.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~ 335 (442)
T COG1061 257 NEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKV 335 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 0001122334444455444 356999999999999999999988877 889999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcccc
Q 011446 411 LVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 411 lvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~ 451 (485)
||++.++.+|+|+|+++++|......|...|+||+||.-|.
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999993
No 93
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.4e-31 Score=260.78 Aligned_cols=296 Identities=20% Similarity=0.242 Sum_probs=230.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.+-|+|+.+|..+-.+..++|+|.|.+|||.++.+++-..+.... +|+|.+|-++|..|.++.+..-+. .|+.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~----DVGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK----DVGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc----ccce
Confidence 577999999999999999999999999999999999888887654 999999999999999987776554 4556
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
++|+..+. ..+..+|+|.+.|..++.++.-.+..+.+||+||+|.|-+...+-.|+.-+-.+|.+.+.+++||
T Consensus 202 MTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 78877665 67789999999999999999888999999999999999998888889998999999999999999
Q ss_pred ccchHHHHHHHHhc--CCCeEEeeccccccccceEEEE---------eehhhhh--------------------------
Q 011446 302 TFPVTVKDFKDKYL--QKPYVINLMDELTLKGITQYYA---------FVEERQK-------------------------- 344 (485)
Q Consensus 302 Tl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-------------------------- 344 (485)
|+|. ..+|+.... ....+..+...+.+..+.||.. .+++..+
T Consensus 275 TiPN-A~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~ 353 (1041)
T KOG0948|consen 275 TIPN-ARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKAN 353 (1041)
T ss_pred cCCC-HHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccc
Confidence 9984 566665532 2222233333333333433322 1221100
Q ss_pred -----------------HHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc---------------------------
Q 011446 345 -----------------VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL--------------------------- 380 (485)
Q Consensus 345 -----------------~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~--------------------------- 380 (485)
...+...+-.....++|||+-++++|+.++-.|.++
T Consensus 354 ~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr 433 (1041)
T KOG0948|consen 354 KKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDR 433 (1041)
T ss_pred cccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhc
Confidence 011112222223458999999999999999888762
Q ss_pred ------------CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCC---------CChH
Q 011446 381 ------------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP---------KNSE 439 (485)
Q Consensus 381 ------------~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p---------~s~~ 439 (485)
...+...||++-+-.++.|.-.|..|-++||+||..++.|+|.|.-++|+ ...- .|..
T Consensus 434 ~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~~rKfDG~~fRwissG 512 (1041)
T KOG0948|consen 434 ELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TAVRKFDGKKFRWISSG 512 (1041)
T ss_pred cchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-eeccccCCcceeeeccc
Confidence 23578899999999999999999999999999999999999999766655 2221 2667
Q ss_pred HHHHHhhhccccCc
Q 011446 440 TYLHRVCWIQLSFS 453 (485)
Q Consensus 440 ~~~Qr~GRagR~g~ 453 (485)
.|+|+.|||||.|-
T Consensus 513 EYIQMSGRAGRRG~ 526 (1041)
T KOG0948|consen 513 EYIQMSGRAGRRGI 526 (1041)
T ss_pred ceEEecccccccCC
Confidence 99999999999763
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=7.4e-29 Score=256.69 Aligned_cols=307 Identities=18% Similarity=0.154 Sum_probs=218.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.++++|.-.--.+. +.-|+.++||+|||++|.+|++.....+ ..++|++|++.||.|.++++..+...+|+.+.+
T Consensus 82 ~~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~G---~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~ 156 (896)
T PRK13104 82 RHFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAISG---RGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGV 156 (896)
T ss_pred CcchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhcC---CCEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 46777765544443 4458999999999999999999776543 268999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcCc-ccc-----CCcceEEeeccccccCC----------------C
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKGV-CIL-----KDCSMLVMDEADKLLSP----------------E 278 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~~-~~l-----~~~~~iViDEah~~~~~----------------~ 278 (485)
++|+.+....... ..++|+|+||+.| .+++.... ..+ ..+.++||||||.++=+ .
T Consensus 157 i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~ 234 (896)
T PRK13104 157 IYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSE 234 (896)
T ss_pred EeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchH
Confidence 9999887765444 3689999999999 77777652 223 57899999999987610 0
Q ss_pred CHHHHHHHHHhCCCC--------------C--------------------------------------------------
Q 011446 279 FQPSVEQLIRFLPAN--------------R-------------------------------------------------- 294 (485)
Q Consensus 279 ~~~~~~~i~~~~~~~--------------~-------------------------------------------------- 294 (485)
.......++..+..+ .
T Consensus 235 ~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~l 314 (896)
T PRK13104 235 LYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAM 314 (896)
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHH
Confidence 111111111111100 0
Q ss_pred ------------------------------------------------------------------cEEEEecccchHHH
Q 011446 295 ------------------------------------------------------------------QILMFSATFPVTVK 308 (485)
Q Consensus 295 ------------------------------------------------------------------~~i~~SATl~~~~~ 308 (485)
++-+||+|......
T Consensus 315 f~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~ 394 (896)
T PRK13104 315 FHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAY 394 (896)
T ss_pred hcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHH
Confidence 33455555544444
Q ss_pred HHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHH-Hhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEE
Q 011446 309 DFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLF-SKL-QINQSIIFCNSVNRVELLAKKITELGYSCFY 386 (485)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ 386 (485)
+|..-|.-+-..+.........+.... .+.....|...+..-+ ..+ ...++||||+|++.++.++..|.+.++.+..
T Consensus 395 Ef~~iY~l~Vv~IPtnkp~~R~d~~d~-v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~v 473 (896)
T PRK13104 395 EFQQIYNLEVVVIPTNRSMIRKDEADL-VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQV 473 (896)
T ss_pred HHHHHhCCCEEECCCCCCcceecCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEe
Confidence 444433322211111111111111112 2233444555444433 333 4559999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC--------------------------------------CCE
Q 011446 387 IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA--------------------------------------VNV 428 (485)
Q Consensus 387 ~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~--------------------------------------v~~ 428 (485)
+|+.+.+.++..+.+.|++|. |+||||+|+||+||.= =-|
T Consensus 474 Lnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~ 551 (896)
T PRK13104 474 LNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLR 551 (896)
T ss_pred ecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCE
Confidence 999999999999999999994 9999999999999972 127
Q ss_pred EEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 429 VINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
||-...+.|..-=.|-.|||||-|.-|...
T Consensus 552 VIgTerhesrRID~QLrGRaGRQGDPGss~ 581 (896)
T PRK13104 552 IIGSERHESRRIDNQLRGRAGRQGDPGSSR 581 (896)
T ss_pred EEeeccCchHHHHHHhccccccCCCCCceE
Confidence 888888999999999999999998877664
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=4e-29 Score=261.49 Aligned_cols=304 Identities=22% Similarity=0.228 Sum_probs=231.8
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011446 137 EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (485)
Q Consensus 137 ~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (485)
..+| .+-++|++++..+..+..|+++||||+|||.++.+++...+..+. +++|++|.++|..|.+..+........
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 3455 688999999999999999999999999999999888877776543 699999999999999987776655443
Q ss_pred ceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcE
Q 011446 217 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQI 296 (485)
Q Consensus 217 ~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 296 (485)
--++.++|+..+. .++.++|+|.+.|.+++.++...+..+.+||+||+|.+.+...+..++.++..++.+.++
T Consensus 191 ~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~ 263 (1041)
T COG4581 191 DMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRF 263 (1041)
T ss_pred hhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcE
Confidence 3467788988777 778999999999999999988889999999999999999999999999999999999999
Q ss_pred EEEecccchHHHHHHHHhc--CCCeEEeeccccccccceEEEEee-------hhhhh-----------------------
Q 011446 297 LMFSATFPVTVKDFKDKYL--QKPYVINLMDELTLKGITQYYAFV-------EERQK----------------------- 344 (485)
Q Consensus 297 i~~SATl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----------------------- 344 (485)
++||||+|. ..+|...+. ....+..+..+..+..+.+++..- +...+
T Consensus 264 v~LSATv~N-~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~ 342 (1041)
T COG4581 264 VFLSATVPN-AEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRET 342 (1041)
T ss_pred EEEeCCCCC-HHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcccc
Confidence 999999984 445444332 122222222222222222222211 11110
Q ss_pred ------------------------HHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc--------------------
Q 011446 345 ------------------------VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL-------------------- 380 (485)
Q Consensus 345 ------------------------~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------- 380 (485)
...+...+.....-++|+|+-++..|+.++..+..+
T Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i 422 (1041)
T COG4581 343 DDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAI 422 (1041)
T ss_pred CccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHH
Confidence 001112222223348999999999999988877631
Q ss_pred --------C-------------CeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEE----EcC--
Q 011446 381 --------G-------------YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI----NFD-- 433 (485)
Q Consensus 381 --------~-------------~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI----~~~-- 433 (485)
+ -.+...|++|-+..+..+...|..|-++||+||..++.|+|.|.-++|+ .++
T Consensus 423 ~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~ 502 (1041)
T COG4581 423 GDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGN 502 (1041)
T ss_pred hhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCC
Confidence 1 1245889999999999999999999999999999999999999776665 222
Q ss_pred --CCCChHHHHHHhhhccccC
Q 011446 434 --FPKNSETYLHRVCWIQLSF 452 (485)
Q Consensus 434 --~p~s~~~~~Qr~GRagR~g 452 (485)
-.-+...|.|..|||||.|
T Consensus 503 ~~r~L~~gEy~QmsGRAGRRG 523 (1041)
T COG4581 503 GHRWLSPGEYTQMSGRAGRRG 523 (1041)
T ss_pred ceeecChhHHHHhhhhhcccc
Confidence 1347899999999999964
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.8e-28 Score=256.64 Aligned_cols=315 Identities=23% Similarity=0.224 Sum_probs=246.1
Q ss_pred CCCHHHHHHHHHc-CCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 126 FLKRELLMGIFEK-GFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 126 ~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
..+.++...+.+. .| .-|+-|..||..+.+. .|-+|||..|-|||.+++-+++..+..+ .+|.|+|||.
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTT 653 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTT 653 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccH
Confidence 3455666666554 33 5699999999998853 4789999999999999999999887754 5999999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccc
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (485)
.||.|.++.+++.+..++++|..++.-.+.+++...+ ....+|+|+|.--| . ....+++++++||||-|+
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~-kdv~FkdLGLlIIDEEqR- 727 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----S-KDVKFKDLGLLIIDEEQR- 727 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----C-CCcEEecCCeEEEechhh-
Confidence 9999999999999999999999999888877765444 35789999998643 2 255588999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHh
Q 011446 275 LSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSK 354 (485)
Q Consensus 275 ~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 354 (485)
|+-.-++-++.++.+.-++-||||+=+..-.++-.-+.+-.++.....- +-.+..++. +....-.-..++++
T Consensus 728 ----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~-R~pV~T~V~---~~d~~~ireAI~RE 799 (1139)
T COG1197 728 ----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED-RLPVKTFVS---EYDDLLIREAILRE 799 (1139)
T ss_pred ----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC-CcceEEEEe---cCChHHHHHHHHHH
Confidence 7777788899999999999999997666555555444443333222111 112222222 22211111222222
Q ss_pred -cCCCcEEEEecChhHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE
Q 011446 355 -LQINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN 431 (485)
Q Consensus 355 -~~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~ 431 (485)
...|++...+|.++.++.+++.|..+ ..++.+.||.|+..+-+.++..|.+|+++|||||.+.++|||||+++.+|.
T Consensus 800 l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII 879 (1139)
T COG1197 800 LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII 879 (1139)
T ss_pred HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE
Confidence 35689999999999999999999987 568899999999999999999999999999999999999999999999986
Q ss_pred cCCCC-ChHHHHHHhhhccccCcccccc
Q 011446 432 FDFPK-NSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 432 ~~~p~-s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
-+..+ -.++..|-.||+||..+..+.+
T Consensus 880 e~AD~fGLsQLyQLRGRVGRS~~~AYAY 907 (1139)
T COG1197 880 ERADKFGLAQLYQLRGRVGRSNKQAYAY 907 (1139)
T ss_pred eccccccHHHHHHhccccCCccceEEEE
Confidence 66553 5789999999999987776653
No 97
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.4e-30 Score=242.03 Aligned_cols=328 Identities=15% Similarity=0.154 Sum_probs=228.8
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
...|...+.++.-.+-+++..-...+..+.+.+..+..++.++++|+||||||++...+.+.+..... ..+.+..|+|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCchH
Confidence 34566667777777777665444456666777778888889999999999999998777777665543 3678888999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCC
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSP 277 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~ 277 (485)
..|.+++ .+.+.++++..+...|.....+++.. ...-+-|||.++|++..-.+.. +.++++||+|||| |.+..
T Consensus 102 vaamsva---~RVadEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahERtlAT 175 (699)
T KOG0925|consen 102 VAAMSVA---QRVADEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHERTLAT 175 (699)
T ss_pred HHHHHHH---HHHHHHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhhhHHH
Confidence 9986554 45555556666666666665555432 2234568999999887666444 8899999999999 55554
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEe-ehhhhh---HHHHHHHHH
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAF-VEERQK---VHCLNTLFS 353 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~~l~~ 353 (485)
+....+.+-+..-+++.++|.||||+. ..+|-..| .++-++.+....+.+ .+|.. .+.+.. ...+..+..
T Consensus 176 DiLmGllk~v~~~rpdLk~vvmSatl~--a~Kfq~yf-~n~Pll~vpg~~PvE---i~Yt~e~erDylEaairtV~qih~ 249 (699)
T KOG0925|consen 176 DILMGLLKEVVRNRPDLKLVVMSATLD--AEKFQRYF-GNAPLLAVPGTHPVE---IFYTPEPERDYLEAAIRTVLQIHM 249 (699)
T ss_pred HHHHHHHHHHHhhCCCceEEEeecccc--hHHHHHHh-CCCCeeecCCCCceE---EEecCCCChhHHHHHHHHHHHHHh
Confidence 444334333444457999999999985 45555544 444455554433322 22322 222222 334444555
Q ss_pred hcCCCcEEEEecChhHHHHHHHHHHHc---------CCeEEEEcCCCCHHHHHHHHHHHhc---C--CccEEEEcccccc
Q 011446 354 KLQINQSIIFCNSVNRVELLAKKITEL---------GYSCFYIHAKMLQDHRNRVFHDFRN---G--ACRNLVCTDLFTR 419 (485)
Q Consensus 354 ~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~i~~~f~~---g--~~~vlvaT~~~~~ 419 (485)
...+|.+|||.++.++++..|+.+... ...+.++| +.++..||+.... | .++|+|+|+++++
T Consensus 250 ~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaet 325 (699)
T KOG0925|consen 250 CEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAET 325 (699)
T ss_pred ccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchhe
Confidence 567899999999999999999988742 36788888 5566667765542 2 4789999999999
Q ss_pred CCCCCCCCEEEEcCC------------------CCChHHHHHHhhhcccc--CcccccchHHHHH
Q 011446 420 GIDIQAVNVVINFDF------------------PKNSETYLHRVCWIQLS--FSLSLPNLQFMCS 464 (485)
Q Consensus 420 Gidi~~v~~VI~~~~------------------p~s~~~~~Qr~GRagR~--g~~~~~~~~~~~~ 464 (485)
+++|+++.+||+.++ |.|.++.-||.|||||+ |.-...+.+.++.
T Consensus 326 sltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 326 SLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred eeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 999999999998886 66899999999999997 5544444444443
No 98
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4e-29 Score=257.72 Aligned_cols=308 Identities=20% Similarity=0.286 Sum_probs=237.6
Q ss_pred CCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhccCC--------ceEEEEEcCcHHHHHHHHHHHH
Q 011446 139 GFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNN--------VIQVVILVPTRELALQTSQVCK 209 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--------~~~~lil~P~~~la~q~~~~~~ 209 (485)
|...++++|..+.++++.+ .++++|||||+|||..+++-+++.+....+ ..+++|++|..+|+..+...+.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 4667999999999999987 469999999999999999999998865422 2489999999999999999888
Q ss_pred HHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC--ccccCCcceEEeeccccccCCCCHHHHHHHH
Q 011446 210 ELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQPSVEQLI 287 (485)
Q Consensus 210 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~~~~~~i~ 287 (485)
+....+|+.|..++|+.....+.. ....|++|||+...-...+. ....+-++.+|+||+|.+ .++.++.++.+.
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL-hDdRGpvLESIV 461 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL-HDDRGPVLESIV 461 (1674)
T ss_pred hhccccCcEEEEecccccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc-ccccchHHHHHH
Confidence 888999999999999877553322 46799999999986655442 222445789999999954 566777777775
Q ss_pred HhC-------CCCCcEEEEecccchHHHHHHHHhcC-CCeEEeeccccccccceEEEEeehhhhh--------HHHHHHH
Q 011446 288 RFL-------PANRQILMFSATFPVTVKDFKDKYLQ-KPYVINLMDELTLKGITQYYAFVEERQK--------VHCLNTL 351 (485)
Q Consensus 288 ~~~-------~~~~~~i~~SATl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~l 351 (485)
.+. ...++++++|||+|+ ..+......- .+.++....++.+..+.+.+.-+..+.. ..+...+
T Consensus 462 aRt~r~ses~~e~~RlVGLSATLPN-y~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKV 540 (1674)
T KOG0951|consen 462 ARTFRRSESTEEGSRLVGLSATLPN-YEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKV 540 (1674)
T ss_pred HHHHHHhhhcccCceeeeecccCCc-hhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHH
Confidence 443 347889999999994 3333332222 2344455555655566665555443321 1345556
Q ss_pred HHhcCCCcEEEEecChhHHHHHHHHHHH-------------------------------------cCCeEEEEcCCCCHH
Q 011446 352 FSKLQINQSIIFCNSVNRVELLAKKITE-------------------------------------LGYSCFYIHAKMLQD 394 (485)
Q Consensus 352 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~-------------------------------------~~~~~~~~h~~~~~~ 394 (485)
++....+++|||+.+++++...|..++. +.+.+...|++|+..
T Consensus 541 m~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~ 620 (1674)
T KOG0951|consen 541 LEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRK 620 (1674)
T ss_pred HHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcc
Confidence 6777778999999999999888888773 256788999999999
Q ss_pred HHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEE----EcCC------CCChHHHHHHhhhcccc
Q 011446 395 HRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI----NFDF------PKNSETYLHRVCWIQLS 451 (485)
Q Consensus 395 ~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI----~~~~------p~s~~~~~Qr~GRagR~ 451 (485)
+|..+.+.|.+|.++|+|+|-.++.|+++|+-+++| -|++ +.++.+..|+.|||||-
T Consensus 621 dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 621 DRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred hHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999877777 3333 44788999999999994
No 99
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=5.7e-28 Score=240.15 Aligned_cols=311 Identities=19% Similarity=0.227 Sum_probs=231.6
Q ss_pred CCCHHHHHHH-HHcCCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 126 FLKRELLMGI-FEKGFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 126 ~l~~~l~~~l-~~~~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
.....+.+.+ ....| .+|..|+.++..|... .+-++.|..|||||+++++.++..+..+ .++...+||-
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPTE 321 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPTE 321 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccHH
Confidence 3444555555 44466 7999999999999865 2479999999999999999999887753 4889999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHH---Hh-cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccc
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM---RL-YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~-~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (485)
.||.|.+..+.++++..+++|..++|......... .+ ....+|+|+|..-+.+ ...+.++.+||+||=||
T Consensus 322 ILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQHR- 395 (677)
T COG1200 322 ILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQHR- 395 (677)
T ss_pred HHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEecccc-
Confidence 99999999999999999999999999876554332 22 3458999999975433 55588999999999999
Q ss_pred cCCCCHHHHHHHHHhCCC-CCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHH
Q 011446 275 LSPEFQPSVEQLIRFLPA-NRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS 353 (485)
Q Consensus 275 ~~~~~~~~~~~i~~~~~~-~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 353 (485)
|+-.-+..+..... .+-++.||||+=+..- +-..+.+-..-. ..+.+.....-....+........+..+..
T Consensus 396 ----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTL--Alt~fgDldvS~-IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ 468 (677)
T COG1200 396 ----FGVHQRLALREKGEQNPHVLVMTATPIPRTL--ALTAFGDLDVSI-IDELPPGRKPITTVVIPHERRPEVYERIRE 468 (677)
T ss_pred ----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHH--HHHHhccccchh-hccCCCCCCceEEEEeccccHHHHHHHHHH
Confidence 77766777766666 6789999999754333 222233222222 223333222222233444444455555554
Q ss_pred hcC-CCcEEEEecChhHH--------HHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCC
Q 011446 354 KLQ-INQSIIFCNSVNRV--------ELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID 422 (485)
Q Consensus 354 ~~~-~~~~lVf~~~~~~~--------~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gid 422 (485)
+.. ..++.|.||-+++. +.+++.|... ++.+..+||.|++++++.++.+|++|+.+|||||.+.+.|||
T Consensus 469 ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVd 548 (677)
T COG1200 469 EIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVD 548 (677)
T ss_pred HHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEeccc
Confidence 443 44899999988764 4566666643 567999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCC-ChHHHHHHhhhccccCc
Q 011446 423 IQAVNVVINFDFPK-NSETYLHRVCWIQLSFS 453 (485)
Q Consensus 423 i~~v~~VI~~~~p~-s~~~~~Qr~GRagR~g~ 453 (485)
+|+++.+|..+.-. -.++.=|-.||+||.+.
T Consensus 549 VPnATvMVIe~AERFGLaQLHQLRGRVGRG~~ 580 (677)
T COG1200 549 VPNATVMVIENAERFGLAQLHQLRGRVGRGDL 580 (677)
T ss_pred CCCCeEEEEechhhhhHHHHHHhccccCCCCc
Confidence 99999988877643 45677788899999744
No 100
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-27 Score=217.06 Aligned_cols=310 Identities=17% Similarity=0.164 Sum_probs=217.5
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
++++.|+.+-..++ ...+.+|+|-||+|||.. ++..++...+. |.++.+.+|+...+..++..++..+. ++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~--G~~vciASPRvDVclEl~~Rlk~aF~--~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ--GGRVCIASPRVDVCLELYPRLKQAFS--NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc--CCeEEEecCcccchHHHHHHHHHhhc--cC
Confidence 68899988766555 567899999999999987 44455555543 34889999999988888887777654 46
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEE
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 297 (485)
.+..++|++... ....++|+|..+|+++.+ .++++||||+|-.--..-......+-+.....--+|
T Consensus 172 ~I~~Lyg~S~~~-------fr~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSY-------FRAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchh-------ccccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 677888887654 236899999999988544 478999999996532222333344445556667789
Q ss_pred EEecccchHHHHHHHHhcCCCeEEeeccccccccc-eEEEEeeh-hhh------hHHHHHHHHHhcC--CCcEEEEecCh
Q 011446 298 MFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGI-TQYYAFVE-ERQ------KVHCLNTLFSKLQ--INQSIIFCNSV 367 (485)
Q Consensus 298 ~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~------~~~~l~~l~~~~~--~~~~lVf~~~~ 367 (485)
.+|||.+..++.-+..- +-..+.+...+....+ ...+.+.. -.. ....+...+++.. ..++|||++++
T Consensus 238 ylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I 315 (441)
T COG4098 238 YLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEI 315 (441)
T ss_pred EEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecch
Confidence 99999986665443322 1122333322211111 01111111 111 1124555555443 35999999999
Q ss_pred hHHHHHHHHHHH-cCC-eEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCC-C-CChHHHHH
Q 011446 368 NRVELLAKKITE-LGY-SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF-P-KNSETYLH 443 (485)
Q Consensus 368 ~~~~~l~~~L~~-~~~-~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~-p-~s~~~~~Q 443 (485)
+..+.++..|++ .+. .+..+|+. ...|.+..++|++|+.++||+|.+++||+++|+|++.+.-.- + -+.+..+|
T Consensus 316 ~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQ 393 (441)
T COG4098 316 ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQ 393 (441)
T ss_pred HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHH
Confidence 999999999954 443 56788987 567889999999999999999999999999999998653322 2 46789999
Q ss_pred Hhhhccc-----cCcccccchHHHHHHHHHhhcccc
Q 011446 444 RVCWIQL-----SFSLSLPNLQFMCSMLMYICFTDR 474 (485)
Q Consensus 444 r~GRagR-----~g~~~~~~~~~~~~~~~~~~~~~~ 474 (485)
.+||+|| +|.+.+++.+.-.++....+.--+
T Consensus 394 IaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk~ 429 (441)
T COG4098 394 IAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIKE 429 (441)
T ss_pred HhhhccCCCcCCCCcEEEEeccchHHHHHHHHHHHH
Confidence 9999999 599999998877776666554333
No 101
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=8.6e-28 Score=248.66 Aligned_cols=307 Identities=17% Similarity=0.164 Sum_probs=228.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+++|.-..-.+..| -|..+.||+|||+++.+|++.....+ . .+-|++|+..||.|.++++..+...+|+++++
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G-~--~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~ 155 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTG-K--GVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGV 155 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcC-C--CEEEEecCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 6788888777666555 49999999999999999996433332 2 46699999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcCc------cccCCcceEEeeccccccC----------------CC
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKGV------CILKDCSMLVMDEADKLLS----------------PE 278 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~~------~~l~~~~~iViDEah~~~~----------------~~ 278 (485)
++|+.+..+..... .++|+|+|++.| .+++.... ..+..+.++||||||.++= ..
T Consensus 156 i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~ 233 (830)
T PRK12904 156 ILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSE 233 (830)
T ss_pred EcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccH
Confidence 99998877665553 589999999999 77776543 2367889999999998760 00
Q ss_pred CHHHHHHHHHhCCC------------------------------------------------------------------
Q 011446 279 FQPSVEQLIRFLPA------------------------------------------------------------------ 292 (485)
Q Consensus 279 ~~~~~~~i~~~~~~------------------------------------------------------------------ 292 (485)
+...+..+...+..
T Consensus 234 ~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~ 313 (830)
T PRK12904 234 LYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGE 313 (830)
T ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 11111111111100
Q ss_pred ---------------------------------------------------CCcEEEEecccchHHHHHHHHhcCCCeEE
Q 011446 293 ---------------------------------------------------NRQILMFSATFPVTVKDFKDKYLQKPYVI 321 (485)
Q Consensus 293 ---------------------------------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~~~ 321 (485)
-.++.+||+|...+..+|..-|.-+-..+
T Consensus 314 V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~I 393 (830)
T PRK12904 314 VVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVI 393 (830)
T ss_pred EEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEc
Confidence 01466788887766655555554332222
Q ss_pred eeccccccccceEEEEeehhhhhHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHH
Q 011446 322 NLMDELTLKGITQYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV 399 (485)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i 399 (485)
.........+.. -..+.....|...+...+.. ....++||||+|++.++.+++.|.+.++++..+|+. +.+|+..
T Consensus 394 Ptnkp~~r~d~~-d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~ 470 (830)
T PRK12904 394 PTNRPMIRIDHP-DLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAE 470 (830)
T ss_pred CCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHH
Confidence 221111111111 12234556677777777754 455699999999999999999999999999999996 7889999
Q ss_pred HHHHhcCCccEEEEccccccCCCCCCC--------------------------------------CEEEEcCCCCChHHH
Q 011446 400 FHDFRNGACRNLVCTDLFTRGIDIQAV--------------------------------------NVVINFDFPKNSETY 441 (485)
Q Consensus 400 ~~~f~~g~~~vlvaT~~~~~Gidi~~v--------------------------------------~~VI~~~~p~s~~~~ 441 (485)
+..|..+...|+||||+|+||+||+-- -|||-...|.|..--
T Consensus 471 Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid 550 (830)
T PRK12904 471 IIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRID 550 (830)
T ss_pred HHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHH
Confidence 999999999999999999999999743 279999999999999
Q ss_pred HHHhhhccccCcccccc
Q 011446 442 LHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 442 ~Qr~GRagR~g~~~~~~ 458 (485)
.|-.|||||-|.-|...
T Consensus 551 ~QlrGRagRQGdpGss~ 567 (830)
T PRK12904 551 NQLRGRSGRQGDPGSSR 567 (830)
T ss_pred HHhhcccccCCCCCcee
Confidence 99999999998877764
No 102
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=9.4e-28 Score=243.24 Aligned_cols=276 Identities=18% Similarity=0.178 Sum_probs=184.0
Q ss_pred EEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHH----hc
Q 011446 161 LARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR----LY 236 (485)
Q Consensus 161 ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~----~~ 236 (485)
++.|+||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++.+ +..+..++++.+..+.... ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 578999999999987665555443 3389999999999999999888754 4677888887765443222 23
Q ss_pred CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC---CCHHHHH--HHHHhCCCCCcEEEEecccchHHHHHH
Q 011446 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP---EFQPSVE--QLIRFLPANRQILMFSATFPVTVKDFK 311 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~---~~~~~~~--~i~~~~~~~~~~i~~SATl~~~~~~~~ 311 (485)
...+|+|+|+..+. ..+.++++|||||+|...-. ....... ..+.....+.++|++|||++.+....+
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~ 147 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNA 147 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHH
Confidence 46799999998762 34778999999999976522 1111111 223334468899999999764433222
Q ss_pred HHhcCCCeEEeeccccc---cccceEEEEeehhhh-----hHHHHHHHHHhcC-CCcEEEEecChhH-------------
Q 011446 312 DKYLQKPYVINLMDELT---LKGITQYYAFVEERQ-----KVHCLNTLFSKLQ-INQSIIFCNSVNR------------- 369 (485)
Q Consensus 312 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~l~~l~~~~~-~~~~lVf~~~~~~------------- 369 (485)
.-.......+..... .+.+. .. ...... ...++..+.+... .+++|||+|++..
T Consensus 148 --~~g~~~~~~l~~r~~~~~~p~v~-vi-d~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~ 223 (505)
T TIGR00595 148 --KQKAYRLLVLTRRVSGRKPPEVK-LI-DMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYIL 223 (505)
T ss_pred --hcCCeEEeechhhhcCCCCCeEE-EE-ecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCcc
Confidence 111212222221111 11111 11 111110 1123333333333 3489999776432
Q ss_pred -----------------------------------------------HHHHHHHHHHc--CCeEEEEcCCCCHHHH--HH
Q 011446 370 -----------------------------------------------VELLAKKITEL--GYSCFYIHAKMLQDHR--NR 398 (485)
Q Consensus 370 -----------------------------------------------~~~l~~~L~~~--~~~~~~~h~~~~~~~r--~~ 398 (485)
++.+.+.|.+. +.++..+|++++...+ +.
T Consensus 224 ~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~ 303 (505)
T TIGR00595 224 CCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEA 303 (505)
T ss_pred CCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHH
Confidence 58888888887 6789999999887665 89
Q ss_pred HHHHHhcCCccEEEEccccccCCCCCCCCEEE--EcCC----CC------ChHHHHHHhhhccccCc
Q 011446 399 VFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI--NFDF----PK------NSETYLHRVCWIQLSFS 453 (485)
Q Consensus 399 i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI--~~~~----p~------s~~~~~Qr~GRagR~g~ 453 (485)
+++.|.+|+.+|||+|+++++|+|+|+|++|+ ++|. |. ..+.|.|++||+||.+.
T Consensus 304 ~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~ 370 (505)
T TIGR00595 304 LLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAED 370 (505)
T ss_pred HHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999885 5553 32 24678999999999644
No 103
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=9.1e-28 Score=248.10 Aligned_cols=148 Identities=16% Similarity=0.247 Sum_probs=129.9
Q ss_pred cccCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEE
Q 011446 123 EDYFLKRELLMGIF-----EKGFERP---SPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL 194 (485)
Q Consensus 123 ~~~~l~~~l~~~l~-----~~~~~~~---~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 194 (485)
+.+.+.+++.+.+. ..||..| +|+|.++++.+..++++++.++||+|||++|++|++..+..+. .++||
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 56678888988887 5789988 9999999999999999999999999999999999998776432 47899
Q ss_pred cCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcCccccC-------CcceE
Q 011446 195 VPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKGVCILK-------DCSML 266 (485)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~~~~l~-------~~~~i 266 (485)
+|+++||.|..+++..+...+++++.+++||.+...+.... .++|+|+||++| .+++......++ .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999999988776554 589999999999 888887644444 45899
Q ss_pred Eeecccccc
Q 011446 267 VMDEADKLL 275 (485)
Q Consensus 267 ViDEah~~~ 275 (485)
||||||.|+
T Consensus 220 IIDEADsmL 228 (970)
T PRK12899 220 IIDEVDSIL 228 (970)
T ss_pred EEechhhhh
Confidence 999999886
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4e-28 Score=250.13 Aligned_cols=307 Identities=15% Similarity=0.147 Sum_probs=220.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+++|.-+.-.+..|+ |..+.||+|||+++.+|++.....+. .+-+++|+..||.+-++++..+...+|+++++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~---~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~ 154 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK---GVHVVTVNEYLSSRDATEMGELYRWLGLTVGL 154 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC---CeEEEeccHHHHHhhHHHHHHHHHhcCCeEEE
Confidence 68888988776666555 99999999999999999887776543 78899999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHH-hhhc------CccccCCcceEEeeccccccCC-------------C---
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILD-LSKK------GVCILKDCSMLVMDEADKLLSP-------------E--- 278 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~-~~~~------~~~~l~~~~~iViDEah~~~~~-------------~--- 278 (485)
+.++.+..+.... ..++|+|+|...|-- ++.. .......+.+.||||||.++=+ .
T Consensus 155 i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~ 232 (796)
T PRK12906 155 NLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATD 232 (796)
T ss_pred eCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchH
Confidence 9987665544333 478999999987632 2221 1223456789999999977500 0
Q ss_pred CHHHHHHHHHhCCC------------------------------------------------------------------
Q 011446 279 FQPSVEQLIRFLPA------------------------------------------------------------------ 292 (485)
Q Consensus 279 ~~~~~~~i~~~~~~------------------------------------------------------------------ 292 (485)
+...+..+...+..
T Consensus 233 ~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~ 312 (796)
T PRK12906 233 LYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIML 312 (796)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHh
Confidence 11111111110000
Q ss_pred --------------------------------------------------------------CCcEEEEecccchHHHHH
Q 011446 293 --------------------------------------------------------------NRQILMFSATFPVTVKDF 310 (485)
Q Consensus 293 --------------------------------------------------------------~~~~i~~SATl~~~~~~~ 310 (485)
-.++.+||+|...+..++
T Consensus 313 ~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef 392 (796)
T PRK12906 313 KDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEF 392 (796)
T ss_pred cCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHH
Confidence 004556777766555555
Q ss_pred HHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEc
Q 011446 311 KDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIH 388 (485)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h 388 (485)
..-|.-+-..+.........+.. -..+.....|...+...+... ...++||||++++.++.++..|.+.++.+..+|
T Consensus 393 ~~iY~l~vv~IPtnkp~~r~d~~-d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Ln 471 (796)
T PRK12906 393 REIYNMEVITIPTNRPVIRKDSP-DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLN 471 (796)
T ss_pred HHHhCCCEEEcCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEec
Confidence 44443322111111111111111 122334456666666666433 566999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC---CCC-----EEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 389 AKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ---AVN-----VVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 389 ~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~---~v~-----~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+++...++..+...+++|. |+|||++|+||+||+ +|. |||+++.|.|...|.|+.||+||.|.-|...
T Consensus 472 a~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 472 AKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred CCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 9998877777777777776 999999999999995 889 9999999999999999999999999888764
No 105
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=7e-27 Score=253.96 Aligned_cols=303 Identities=15% Similarity=0.176 Sum_probs=194.4
Q ss_pred CCcHHHHHHHHHHhc-----CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011446 142 RPSPIQEESIPIALT-----GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~-----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (485)
.++++|.++|..+.. .+.++++++||||||.+++..+ ..+.......++|+++|+++|+.|+.+.+..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 589999999987763 3569999999999998854433 3343333345999999999999999998887643222
Q ss_pred ceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC-----ccccCCcceEEeeccccccCC--------------
Q 011446 217 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-----VCILKDCSMLVMDEADKLLSP-------------- 277 (485)
Q Consensus 217 ~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~-----~~~l~~~~~iViDEah~~~~~-------------- 277 (485)
..+...++...... ........|+|+|...|...+... ...+..+++||+||||+....
T Consensus 492 ~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 11111111111111 112345789999999997754321 134678899999999985310
Q ss_pred -CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHH--------------HhcC---CCeEEeeccc---ccccc-----
Q 011446 278 -EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKD--------------KYLQ---KPYVINLMDE---LTLKG----- 331 (485)
Q Consensus 278 -~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~--------------~~~~---~~~~~~~~~~---~~~~~----- 331 (485)
++...+..++..+. ...|+||||+......+.. .++- .|..+...-. .....
T Consensus 570 ~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~ 647 (1123)
T PRK11448 570 LDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVE 647 (1123)
T ss_pred hhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhh
Confidence 12456777777553 4579999998532221111 1111 1111111000 00000
Q ss_pred -ceE---EE--Eeehhhh--h-------------H-HHHHHHH---HhcCCCcEEEEecChhHHHHHHHHHHHc------
Q 011446 332 -ITQ---YY--AFVEERQ--K-------------V-HCLNTLF---SKLQINQSIIFCNSVNRVELLAKKITEL------ 380 (485)
Q Consensus 332 -~~~---~~--~~~~~~~--~-------------~-~~l~~l~---~~~~~~~~lVf~~~~~~~~~l~~~L~~~------ 380 (485)
... .+ ...+... . . ..+..++ .....+++||||.++++|+.+++.|.+.
T Consensus 648 ~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~ 727 (1123)
T PRK11448 648 VINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYG 727 (1123)
T ss_pred hcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 000 00 0000000 0 0 0111222 2223479999999999999999988763
Q ss_pred CC---eEEEEcCCCCHHHHHHHHHHHhcCCc-cEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcccc
Q 011446 381 GY---SCFYIHAKMLQDHRNRVFHDFRNGAC-RNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 381 ~~---~~~~~h~~~~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~ 451 (485)
++ .+..+||+++ .+..+++.|+++.. +|+|+++++.+|+|+|.+.+||++.++.|...|+|++||+.|.
T Consensus 728 ~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 728 QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 22 4556888875 46789999999886 6899999999999999999999999999999999999999995
No 106
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=4e-26 Score=243.59 Aligned_cols=307 Identities=15% Similarity=0.150 Sum_probs=208.3
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHhhhhc-cCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011446 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (485)
.+++||.+++.+++ .+.+.|++.++|.|||++.+.. +.++.. .+....+|||||.. +..+|.+.+.+++. .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~~~~gp~LIVvP~S-lL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYRGITGPHMVVAPKS-TLGNWMNEIRRFCP--V 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhcCCCCCEEEEeChH-HHHHHHHHHHHHCC--C
Confidence 68999999999886 4678999999999999985443 333332 23334789999974 55778888888764 3
Q ss_pred ceEEEEECCCChHHHHH---HhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCC
Q 011446 217 IQVMVTTGGTSLKDDIM---RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPAN 293 (485)
Q Consensus 217 ~~v~~~~g~~~~~~~~~---~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 293 (485)
+.+..++|....+.... ......+|+|+|++.+...... +.--.+++||+||||++-+.. ......+..+...
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~a~ 320 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFSTN 320 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCHH--HHHHHHHHHhhcC
Confidence 56666777654332221 1134678999999998764321 112357899999999986633 2234445555444
Q ss_pred CcEEEEecccc-hHHHHHHH------------------Hh----------------------------------cCCCeE
Q 011446 294 RQILMFSATFP-VTVKDFKD------------------KY----------------------------------LQKPYV 320 (485)
Q Consensus 294 ~~~i~~SATl~-~~~~~~~~------------------~~----------------------------------~~~~~~ 320 (485)
. .+++|||+- ..+.++.. .+ +.....
T Consensus 321 ~-RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e 399 (1033)
T PLN03142 321 Y-RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKE 399 (1033)
T ss_pred c-EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCcee
Confidence 3 489999961 11111100 00 000000
Q ss_pred Eeecccccc-----------------------c---cc--------eE------------E---EEeehhhhhHHHHHHH
Q 011446 321 INLMDELTL-----------------------K---GI--------TQ------------Y---YAFVEERQKVHCLNTL 351 (485)
Q Consensus 321 ~~~~~~~~~-----------------------~---~~--------~~------------~---~~~~~~~~~~~~l~~l 351 (485)
..+....+. . ++ .+ + ...+....|+..+..+
T Consensus 400 ~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkL 479 (1033)
T PLN03142 400 TILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKL 479 (1033)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHH
Confidence 000000000 0 00 00 0 0001123455666666
Q ss_pred HHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcC---CccEEEEccccccCCCCCCC
Q 011446 352 FSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG---ACRNLVCTDLFTRGIDIQAV 426 (485)
Q Consensus 352 ~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g---~~~vlvaT~~~~~Gidi~~v 426 (485)
+... ...++|||+.....+..|.+.|...++.+..+||+++..+|..+++.|... ...+|++|.+++.|||+..+
T Consensus 480 L~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~A 559 (1033)
T PLN03142 480 LPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATA 559 (1033)
T ss_pred HHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhC
Confidence 6554 345999999999999999999999999999999999999999999999753 34578999999999999999
Q ss_pred CEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 427 NVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 427 ~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
++||+||+++++....|++|||.|.|+....
T Consensus 560 d~VIiyD~dWNP~~d~QAidRaHRIGQkk~V 590 (1033)
T PLN03142 560 DIVILYDSDWNPQVDLQAQDRAHRIGQKKEV 590 (1033)
T ss_pred CEEEEeCCCCChHHHHHHHHHhhhcCCCceE
Confidence 9999999999999999999999999987544
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=1.8e-26 Score=203.05 Aligned_cols=165 Identities=34% Similarity=0.572 Sum_probs=142.4
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEE
Q 011446 144 SPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTT 223 (485)
Q Consensus 144 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~ 223 (485)
||+|.++++.+..++++++.+|||+|||++|+++++..+.+. ...+++|++|+++|+.|+.+.+..++...+.++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999988876 4449999999999999999999999988788899999
Q ss_pred CCCChH-HHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCC--CCCcEEEEe
Q 011446 224 GGTSLK-DDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP--ANRQILMFS 300 (485)
Q Consensus 224 g~~~~~-~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~--~~~~~i~~S 300 (485)
++.... .....+...++|+|+||++|.+.+..+...+.++++||+||+|.+....+...+..++..+. .+.+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 988755 44444456799999999999998887555677799999999999988788888888887763 368999999
Q ss_pred cccchHHHH
Q 011446 301 ATFPVTVKD 309 (485)
Q Consensus 301 ATl~~~~~~ 309 (485)
||++..+++
T Consensus 160 AT~~~~~~~ 168 (169)
T PF00270_consen 160 ATLPSNVEK 168 (169)
T ss_dssp SSSTHHHHH
T ss_pred eCCChhHhh
Confidence 999866554
No 108
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=3.7e-26 Score=232.25 Aligned_cols=314 Identities=19% Similarity=0.202 Sum_probs=224.3
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHH--HHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHH
Q 011446 126 FLKRELLMGIFEKGFERPSPIQEESI--PIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQ 203 (485)
Q Consensus 126 ~l~~~l~~~l~~~~~~~~~~~Q~~~i--~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (485)
+++.........+|...++.+|.+++ +.++.++++|..+||+.|||+++.+.++..+..... .++.+.|..+.+..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vsiv~E 284 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVSIVQE 284 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceeehhHH
Confidence 33444444455668889999999987 578888999999999999999999999888776443 57888898888877
Q ss_pred HHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC--ccccCCcceEEeeccccccCCCCHH
Q 011446 204 TSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQP 281 (485)
Q Consensus 204 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~~ 281 (485)
-...+..+....|+.+....|....... ....++.|||.++-..++.+- ...+..+++||+||.|.+.+.+.+.
T Consensus 285 k~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~ 360 (1008)
T KOG0950|consen 285 KISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGA 360 (1008)
T ss_pred HHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccch
Confidence 7788888888999999888866543321 245689999999876544431 2336678999999999999988888
Q ss_pred HHHHHHHhC-----CCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-----ccccccceEEEEeehhhhhHHHHHH-
Q 011446 282 SVEQLIRFL-----PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-----ELTLKGITQYYAFVEERQKVHCLNT- 350 (485)
Q Consensus 282 ~~~~i~~~~-----~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~- 350 (485)
.++.++..+ ....|+|+||||++. +. ++..++.......-.. +....+.. ..+.. +...+..
T Consensus 361 ~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~-lL~~~L~A~~y~t~fRPv~L~E~ik~G~~----i~~~~-r~~~lr~i 433 (1008)
T KOG0950|consen 361 ILELLLAKILYENLETSVQIIGMSATIPN-NS-LLQDWLDAFVYTTRFRPVPLKEYIKPGSL----IYESS-RNKVLREI 433 (1008)
T ss_pred HHHHHHHHHHHhccccceeEeeeecccCC-hH-HHHHHhhhhheecccCcccchhccCCCcc----cccch-hhHHHHHh
Confidence 888776543 334679999999984 22 2333333211111000 01111110 00000 1122222
Q ss_pred ------------------HHHh-cCCC-cEEEEecChhHHHHHHHHHHH-------------------------------
Q 011446 351 ------------------LFSK-LQIN-QSIIFCNSVNRVELLAKKITE------------------------------- 379 (485)
Q Consensus 351 ------------------l~~~-~~~~-~~lVf~~~~~~~~~l~~~L~~------------------------------- 379 (485)
+..+ .+.+ ++||||++++.|+.++..+..
T Consensus 434 a~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~l 513 (1008)
T KOG0950|consen 434 ANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGIL 513 (1008)
T ss_pred hhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCccc
Confidence 2211 1223 599999999999998866654
Q ss_pred -------cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcC----CCCChHHHHHHhhhc
Q 011446 380 -------LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD----FPKNSETYLHRVCWI 448 (485)
Q Consensus 380 -------~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~----~p~s~~~~~Qr~GRa 448 (485)
..+.+.++|++++.++|+.+...|+.|...|++||+.++.|++.|..+++|-.- .+.+..+|.|++|||
T Consensus 514 d~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRA 593 (1008)
T KOG0950|consen 514 DPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRA 593 (1008)
T ss_pred chHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhh
Confidence 135678999999999999999999999999999999999999999998888432 245788999999999
Q ss_pred cccC
Q 011446 449 QLSF 452 (485)
Q Consensus 449 gR~g 452 (485)
||+|
T Consensus 594 GR~g 597 (1008)
T KOG0950|consen 594 GRTG 597 (1008)
T ss_pred hhcc
Confidence 9984
No 109
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.1e-25 Score=232.54 Aligned_cols=307 Identities=16% Similarity=0.162 Sum_probs=216.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.++++|.-.--.+ .+.-|+.++||.|||++|.+|++.....+. .+.|++|+..||.+..+++..+...+|+++.+
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 5677776544433 345689999999999999999987766443 48999999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcC-ccc-----cCCcceEEeeccccccCCC----------------
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG-VCI-----LKDCSMLVMDEADKLLSPE---------------- 278 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~-~~~-----l~~~~~iViDEah~~~~~~---------------- 278 (485)
..++.+..+ +.-...++|+|+|++.| .+++... ... ...+.++||||||.++-+.
T Consensus 157 i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~ 234 (908)
T PRK13107 157 NVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSE 234 (908)
T ss_pred ecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchH
Confidence 999887643 23234789999999999 7766654 212 3678899999999876211
Q ss_pred CHHHHHHHHHhCC-------------------CC----------------------------------------------
Q 011446 279 FQPSVEQLIRFLP-------------------AN---------------------------------------------- 293 (485)
Q Consensus 279 ~~~~~~~i~~~~~-------------------~~---------------------------------------------- 293 (485)
+...+..++..+. ..
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL 314 (908)
T PRK13107 235 LYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAAL 314 (908)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHH
Confidence 0000111100000 00
Q ss_pred ----------------------------------------------------------------------CcEEEEeccc
Q 011446 294 ----------------------------------------------------------------------RQILMFSATF 303 (485)
Q Consensus 294 ----------------------------------------------------------------------~~~i~~SATl 303 (485)
.++-+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa 394 (908)
T PRK13107 315 RAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTA 394 (908)
T ss_pred HHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCC
Confidence 0344555555
Q ss_pred chHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHH-HHHhc-CCCcEEEEecChhHHHHHHHHHHHcC
Q 011446 304 PVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNT-LFSKL-QINQSIIFCNSVNRVELLAKKITELG 381 (485)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~ 381 (485)
..+..+|..-|--+-..+..............+ +.....|...+.. +...+ ...++||||.|++.++.++..|...+
T Consensus 395 ~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~i-y~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g 473 (908)
T PRK13107 395 DTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLV-YLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEK 473 (908)
T ss_pred hHHHHHHHHHhCCCEEECCCCCCccceeCCCcE-EeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 544444444433322222111111111222122 2233444444433 33333 44599999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC------------------------------------
Q 011446 382 YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA------------------------------------ 425 (485)
Q Consensus 382 ~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~------------------------------------ 425 (485)
+.+..+|+.+++.++..+.+.|++|. |+||||+|+||+||.=
T Consensus 474 i~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 551 (908)
T PRK13107 474 IPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAA 551 (908)
T ss_pred CCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHc
Confidence 99999999999999999999999998 9999999999999972
Q ss_pred -CCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 426 -VNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 426 -v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
=-|||-...+.|..-=.|-.|||||-|.-|...
T Consensus 552 GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 552 GGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 237998889999999999999999998877664
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.93 E-value=2.3e-24 Score=228.49 Aligned_cols=309 Identities=21% Similarity=0.215 Sum_probs=206.1
Q ss_pred CcHHHHHHHHHHhcC---C-CEEEEccCCCchhHHhHHHHHhhhhc-cCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 143 PSPIQEESIPIALTG---S-DILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~~---~-~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.++.|..++..+... . .+++.||||+|||++++.+++..+.. .....+++++.|+++++.++++.++++....+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 488999999988864 4 68899999999999999999888776 345569999999999999999999887665543
Q ss_pred eEEEEECCCChHHHHHH-----h---------cCCCeEEEEcchHHHHhhhcCccc--c--CCcceEEeeccccccCCCC
Q 011446 218 QVMVTTGGTSLKDDIMR-----L---------YQPVHLLVGTPGRILDLSKKGVCI--L--KDCSMLVMDEADKLLSPEF 279 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~-----~---------~~~~~Ili~Tp~~l~~~~~~~~~~--l--~~~~~iViDEah~~~~~~~ 279 (485)
....+++.......... . ..-..+.++||..+.......... + =..+.+|+||+|.+.....
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~ 355 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETM 355 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccch
Confidence 33223333322111000 0 011234455555444422211111 1 1237899999998765533
Q ss_pred HHHHHHHHHhC-CCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEe---ehhhhh--HHHHHHHHH
Q 011446 280 QPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAF---VEERQK--VHCLNTLFS 353 (485)
Q Consensus 280 ~~~~~~i~~~~-~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~l~~l~~ 353 (485)
...+..++..+ ..+..+|+||||+|+..++.+...+.....+................. ...... .........
T Consensus 356 ~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (733)
T COG1203 356 LAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISE 435 (733)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchh
Confidence 44444444333 457889999999999999988887766554444322111000000000 000000 011111222
Q ss_pred h-cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHH----hcCCccEEEEccccccCCCCCCCCE
Q 011446 354 K-LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDF----RNGACRNLVCTDLFTRGIDIQAVNV 428 (485)
Q Consensus 354 ~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f----~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (485)
. ...++++|.|||+..|..+++.|+..+..+..+||.+...+|.+.++.. ..+...|+|||++.+.|+||+ .++
T Consensus 436 ~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~ 514 (733)
T COG1203 436 EVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDV 514 (733)
T ss_pred hhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCe
Confidence 2 2445999999999999999999999877899999999999998877754 457888999999999999995 777
Q ss_pred EEEcCCCCChHHHHHHhhhccccCcc
Q 011446 429 VINFDFPKNSETYLHRVCWIQLSFSL 454 (485)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~ 454 (485)
+|-= +..+.+.+||+||++|-|..
T Consensus 515 mITe--~aPidSLIQR~GRv~R~g~~ 538 (733)
T COG1203 515 LITE--LAPIDSLIQRAGRVNRHGKK 538 (733)
T ss_pred eeec--CCCHHHHHHHHHHHhhcccc
Confidence 7643 34478899999999998844
No 111
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=1.4e-23 Score=208.23 Aligned_cols=305 Identities=18% Similarity=0.198 Sum_probs=221.3
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEccCCCchhHHhHHHHHhhhhc-cCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011446 142 RPSPIQEESIPIALT----GSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (485)
.+++||.+.++++.. +-+.|+..++|-|||++ .+.++.++.. .+..+.-||+||...|. .|.+.+++++. +
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~GPfLVi~P~StL~-NW~~Ef~rf~P--~ 242 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIPGPFLVIAPKSTLD-NWMNEFKRFTP--S 242 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCCCCeEEEeeHhhHH-HHHHHHHHhCC--C
Confidence 689999999998773 56799999999999998 4555666654 33344789999998884 45666777765 5
Q ss_pred ceEEEEECCCChHHHHHH---hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCC
Q 011446 217 IQVMVTTGGTSLKDDIMR---LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPAN 293 (485)
Q Consensus 217 ~~v~~~~g~~~~~~~~~~---~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 293 (485)
+++.+++|+...+..... .....+|+|+|+++.++- +..+.--.++++|||||||+-+..- .+..+++.+...
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s--~L~~~lr~f~~~ 318 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKS--KLSKILREFKTD 318 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhh--HHHHHHHHhccc
Confidence 778889998765543322 234689999999998763 1122223578999999999876442 244666666555
Q ss_pred CcEEEEecccc---------------------------------------------------------------------
Q 011446 294 RQILMFSATFP--------------------------------------------------------------------- 304 (485)
Q Consensus 294 ~~~i~~SATl~--------------------------------------------------------------------- 304 (485)
.+ +++|+|+-
T Consensus 319 nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE 397 (971)
T KOG0385|consen 319 NR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKE 397 (971)
T ss_pred ce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcce
Confidence 54 77788840
Q ss_pred -------------------------------------hHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHH
Q 011446 305 -------------------------------------VTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHC 347 (485)
Q Consensus 305 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (485)
.++.-.+++.+++|+.+.....- +....-.+.+....|+.+
T Consensus 398 ~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg--~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 398 LIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG--PPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred eeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC--CCCCcchHHHhcCcceeh
Confidence 00111222334444444332110 111112223445567777
Q ss_pred HHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCC---ccEEEEccccccCCC
Q 011446 348 LNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA---CRNLVCTDLFTRGID 422 (485)
Q Consensus 348 l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~---~~vlvaT~~~~~Gid 422 (485)
|..++... ...+||||.......+.|.+++.-+++....+.|.++.++|...++.|.... +-.|++|.+.+-|||
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 88887765 3459999999999999999999889999999999999999999999997644 446889999999999
Q ss_pred CCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 423 IQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 423 i~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
+..+++||.||..+++..-.|..-||.|.|+....
T Consensus 556 L~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V 590 (971)
T KOG0385|consen 556 LTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPV 590 (971)
T ss_pred cccccEEEEecCCCCchhhhHHHHHHHhhCCcCce
Confidence 99999999999999999999999999999876554
No 112
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.90 E-value=4.8e-24 Score=221.02 Aligned_cols=324 Identities=19% Similarity=0.196 Sum_probs=221.0
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCcHHHHHHHHHHHHHHhccC
Q 011446 141 ERPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELGKHL 215 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~~~~ 215 (485)
..++.||.+.+++++ .++++|+..++|.|||.+.+- .|.++.... -.+..|||+|...+. .+.+++...+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~-fl~~l~~~~~~~gpflvvvplst~~----~W~~ef~~w~ 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTIT-FLSYLFHSLQIHGPFLVVVPLSTIT----AWEREFETWT 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHH-HHHHHHHhhhccCCeEEEeehhhhH----HHHHHHHHHh
Confidence 589999999999887 468899999999999987433 333333222 233679999997763 4444555555
Q ss_pred CceEEEEECCCChHHHHHHhc----C-----CCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHH
Q 011446 216 NIQVMVTTGGTSLKDDIMRLY----Q-----PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQL 286 (485)
Q Consensus 216 ~~~v~~~~g~~~~~~~~~~~~----~-----~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i 286 (485)
.+++++++|....+..++... . ..+++++|++.++.--. .+.--.+.++++||||++-+.. ...+..
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~~-~~l~~~- 519 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKNDE-SKLYES- 519 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCchH-HHHHHH-
Confidence 789999999887776554431 1 46899999998865221 1112246799999999987644 223333
Q ss_pred HHhCCCCCcEEEEeccc-chHHHHHH------------------------------------------------------
Q 011446 287 IRFLPANRQILMFSATF-PVTVKDFK------------------------------------------------------ 311 (485)
Q Consensus 287 ~~~~~~~~~~i~~SATl-~~~~~~~~------------------------------------------------------ 311 (485)
+..+..+-+ +++|+|+ -..+.++.
T Consensus 520 l~~f~~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~ 598 (1373)
T KOG0384|consen 520 LNQFKMNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPP 598 (1373)
T ss_pred HHHhcccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCC
Confidence 444444444 6777774 11122211
Q ss_pred -----------------------------------------------HHhcCCCeEEeeccccccccceE------EEEe
Q 011446 312 -----------------------------------------------DKYLQKPYVINLMDELTLKGITQ------YYAF 338 (485)
Q Consensus 312 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 338 (485)
++.+++|+.+....+....+... +..+
T Consensus 599 k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~l 678 (1373)
T KOG0384|consen 599 KEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQAL 678 (1373)
T ss_pred CcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHH
Confidence 11122222222211111111100 0000
Q ss_pred ehhhhhHHHHHHHHHhcC--CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhc---CCccEEEE
Q 011446 339 VEERQKVHCLNTLFSKLQ--INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN---GACRNLVC 413 (485)
Q Consensus 339 ~~~~~~~~~l~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~---g~~~vlva 413 (485)
+....|+-+|..|+.++. ..+||||...+...+.|+++|..+++..-.+.|.+..+.|...++.|.. ..+..|+|
T Consensus 679 I~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLS 758 (1373)
T KOG0384|consen 679 IQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLS 758 (1373)
T ss_pred HHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEe
Confidence 111223334444555443 3499999999999999999999999999999999999999999999975 45778999
Q ss_pred ccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccchHHHHHHHHHhhcccc
Q 011446 414 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPNLQFMCSMLMYICFTDR 474 (485)
Q Consensus 414 T~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~~~~~~~~~~~~~~~~~ 474 (485)
|-+.+-|||+..++.||.||-.|++.+=+|...||.|.|+.-..+.+++.....+....+.
T Consensus 759 TRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilE 819 (1373)
T KOG0384|consen 759 TRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILE 819 (1373)
T ss_pred cccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHH
Confidence 9999999999999999999999999999999999999999888877766665444444433
No 113
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.89 E-value=1e-20 Score=193.93 Aligned_cols=280 Identities=22% Similarity=0.269 Sum_probs=193.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCC-c
Q 011446 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN-I 217 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~-~ 217 (485)
|+ .|+..|+--...+..|++.-+.||||.|||+--++..+- +. ..+.+++|++||..|+.|+.+.+.+++...+ .
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~-~a--~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY-LA--KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH-HH--hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 44 899999999999999999999999999999754332222 22 2335999999999999999999999998776 3
Q ss_pred eEEE-EECCCChHH---HHHHh-cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC-----------CHH
Q 011446 218 QVMV-TTGGTSLKD---DIMRL-YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-----------FQP 281 (485)
Q Consensus 218 ~v~~-~~g~~~~~~---~~~~~-~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-----------~~~ 281 (485)
.+.. .++.....+ .+..+ ..+.+|+|+|..-|...+..-. --++++|++|++|.++..+ |..
T Consensus 156 ~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~LkaskNvDriL~LlGf~e 233 (1187)
T COG1110 156 DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKASKNVDRLLRLLGFSE 233 (1187)
T ss_pred ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhccccHHHHHHHcCCCH
Confidence 3333 444433322 12222 3578999999987766554311 1368999999999776322 221
Q ss_pred H-------HHHHHHh------------------------CCCCCcEEEEecccchHH--HHHHHHhcCCCeEEeeccccc
Q 011446 282 S-------VEQLIRF------------------------LPANRQILMFSATFPVTV--KDFKDKYLQKPYVINLMDELT 328 (485)
Q Consensus 282 ~-------~~~i~~~------------------------~~~~~~~i~~SATl~~~~--~~~~~~~~~~~~~~~~~~~~~ 328 (485)
. +..+... -.+..++|..|||..+.- ..+.+.+++-. .......
T Consensus 234 E~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe---vG~~~~~ 310 (1187)
T COG1110 234 EVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE---VGSGGEG 310 (1187)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc---cCccchh
Confidence 1 0111111 113457899999975332 22333333211 1112223
Q ss_pred cccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecC---hhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhc
Q 011446 329 LKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS---VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 405 (485)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~---~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~ 405 (485)
..|+...+... .....+..++++... -.|||++. ++.++.+++.|.+.|+++..+|+. ..+.++.|..
T Consensus 311 LRNIvD~y~~~---~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~ 381 (1187)
T COG1110 311 LRNIVDIYVES---ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE 381 (1187)
T ss_pred hhheeeeeccC---ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc
Confidence 34444444333 444556667777765 48999999 999999999999999999999985 3678999999
Q ss_pred CCccEEEEcc----ccccCCCCCC-CCEEEEcCCCC
Q 011446 406 GACRNLVCTD----LFTRGIDIQA-VNVVINFDFPK 436 (485)
Q Consensus 406 g~~~vlvaT~----~~~~Gidi~~-v~~VI~~~~p~ 436 (485)
|+.+|||... ++-||||+|. ++++|++|.|+
T Consensus 382 GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 382 GEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred CceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 9999999754 7899999996 88999999994
No 114
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1e-20 Score=191.55 Aligned_cols=306 Identities=17% Similarity=0.109 Sum_probs=210.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+++|.-+.-.++.| -|+.+.||+|||+++.+|++.....+ ..+-|++|+..||.+-++++..+...+|+++++
T Consensus 78 r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G---~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~ 152 (764)
T PRK12326 78 RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQG---RRVHVITVNDYLARRDAEWMGPLYEALGLTVGW 152 (764)
T ss_pred CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcC---CCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6889999988888766 47799999999999999998776643 378899999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHH-hhh------cCccccCCcceEEeeccccccC---------------CCC
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILD-LSK------KGVCILKDCSMLVMDEADKLLS---------------PEF 279 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~-~~~------~~~~~l~~~~~iViDEah~~~~---------------~~~ 279 (485)
+.++.+..+.... ..++|+|+|...|-- ++. ........+.++||||||.++= ...
T Consensus 153 i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~ 230 (764)
T PRK12326 153 ITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAP 230 (764)
T ss_pred ECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhH
Confidence 9888775543333 468999999986532 111 1122345688999999997750 001
Q ss_pred HHHHHHHHHhCCCC------------------------------------------------------------------
Q 011446 280 QPSVEQLIRFLPAN------------------------------------------------------------------ 293 (485)
Q Consensus 280 ~~~~~~i~~~~~~~------------------------------------------------------------------ 293 (485)
...+..+...+..+
T Consensus 231 y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dge 310 (764)
T PRK12326 231 RGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGK 310 (764)
T ss_pred HHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 11111111111000
Q ss_pred ----------------------------------------------------CcEEEEecccchHHHHHHHHhcCCCeEE
Q 011446 294 ----------------------------------------------------RQILMFSATFPVTVKDFKDKYLQKPYVI 321 (485)
Q Consensus 294 ----------------------------------------------------~~~i~~SATl~~~~~~~~~~~~~~~~~~ 321 (485)
.++-+||+|......++..-|.-+-..+
T Consensus 311 V~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~I 390 (764)
T PRK12326 311 VHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVI 390 (764)
T ss_pred EEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEEC
Confidence 1456778887655555555444332211
Q ss_pred eeccccccccceEEEEeehhhhhHHHH-HHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHH
Q 011446 322 NLMDELTLKGITQYYAFVEERQKVHCL-NTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV 399 (485)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i 399 (485)
.........+....+ +.....|...+ ..+...+ ...|+||.|.+++..+.++..|.+.+++...+++.-...+ ..|
T Consensus 391 Ptnkp~~R~d~~d~i-y~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~I 468 (764)
T PRK12326 391 PPNKPNIREDEADRV-YATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARI 468 (764)
T ss_pred CCCCCceeecCCCce-EeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHH
Confidence 111111111221122 23344444443 3444443 4459999999999999999999999999999998744333 444
Q ss_pred HHHHhcCC-ccEEEEccccccCCCCCC---------------CCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 400 FHDFRNGA-CRNLVCTDLFTRGIDIQA---------------VNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 400 ~~~f~~g~-~~vlvaT~~~~~Gidi~~---------------v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+.. .|. -.|.|||++|+||.||.- =-|||-...+.|..--.|-.|||||-|.-|...
T Consensus 469 Ia~--AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~ 541 (764)
T PRK12326 469 IAE--AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSV 541 (764)
T ss_pred HHh--cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCcee
Confidence 432 343 459999999999999972 238999999999999999999999998888764
No 115
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2e-21 Score=201.91 Aligned_cols=117 Identities=14% Similarity=0.071 Sum_probs=103.0
Q ss_pred hhhhhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 011446 340 EERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 417 (485)
Q Consensus 340 ~~~~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~ 417 (485)
....|...+...+... ...++||||+|++.++.|+..|...++.+..+|+ .+.+|+..+..|..+...|+||||+|
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 3456777777777543 5669999999999999999999999999999997 58899999999999999999999999
Q ss_pred ccCCCCC---CCC-----EEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 418 TRGIDIQ---AVN-----VVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 418 ~~Gidi~---~v~-----~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+||+||+ +|. +||++..|.|...|.||+||+||.|.-|...
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 9999999 553 4599999999999999999999999888774
No 116
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=2.5e-20 Score=201.99 Aligned_cols=301 Identities=19% Similarity=0.205 Sum_probs=187.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHH
Q 011446 127 LKRELLMGIFEKGFERPSPIQEESIP----IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELAL 202 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~----~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~ 202 (485)
+++.+.+.+...||+ +++.|.+.+. .+.+++++++.||||+|||++|++|++.... .+.++||.+||++|..
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~ 306 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQS 306 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHH
Confidence 334667777778886 7999998666 5556788999999999999999999988766 2348999999999999
Q ss_pred HHHH-HHHHHhccCC--ceEEEEECCCChH---------------HH---------------------------------
Q 011446 203 QTSQ-VCKELGKHLN--IQVMVTTGGTSLK---------------DD--------------------------------- 231 (485)
Q Consensus 203 q~~~-~~~~~~~~~~--~~v~~~~g~~~~~---------------~~--------------------------------- 231 (485)
|+.. .+..+.+.++ +++..+.|..+.- .+
T Consensus 307 Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~ 386 (850)
T TIGR01407 307 QLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFF 386 (850)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhH
Confidence 9865 5555554444 5666666554320 00
Q ss_pred -----------------------HHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-------CCC--
Q 011446 232 -----------------------IMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-------PEF-- 279 (485)
Q Consensus 232 -----------------------~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-------~~~-- 279 (485)
.+.....++|+||....|+..+......+....++||||||.+.+ ..+
T Consensus 387 ~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~ 466 (850)
T TIGR01407 387 AQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDY 466 (850)
T ss_pred HHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCH
Confidence 000112578999999988776544333466778999999998742 000
Q ss_pred ---HHH----------------------------------------------------------------HHHHHHh---
Q 011446 280 ---QPS----------------------------------------------------------------VEQLIRF--- 289 (485)
Q Consensus 280 ---~~~----------------------------------------------------------------~~~i~~~--- 289 (485)
... +...+..
T Consensus 467 ~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~ 546 (850)
T TIGR01407 467 ADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKD 546 (850)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 000 0000000
Q ss_pred --------C-------------------------------------CCCCcEEEEecccchH-HHHHHHHhcCCCe--EE
Q 011446 290 --------L-------------------------------------PANRQILMFSATFPVT-VKDFKDKYLQKPY--VI 321 (485)
Q Consensus 290 --------~-------------------------------------~~~~~~i~~SATl~~~-~~~~~~~~~~~~~--~~ 321 (485)
+ +....+|++|||+... ..+.....+.-+. ..
T Consensus 547 ~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~ 626 (850)
T TIGR01407 547 DFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFN 626 (850)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccc
Confidence 0 0113578999999632 2333433333221 11
Q ss_pred ee-ccccccccceEEEEe--e------hhhhhH----HHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc----CCeE
Q 011446 322 NL-MDELTLKGITQYYAF--V------EERQKV----HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL----GYSC 384 (485)
Q Consensus 322 ~~-~~~~~~~~~~~~~~~--~------~~~~~~----~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~ 384 (485)
.+ ...+....-...+.. . ....-. ..+..++.. ..+++|||++|.+.++.+++.|... ++.+
T Consensus 627 ~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~ 705 (850)
T TIGR01407 627 TIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV 705 (850)
T ss_pred eecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCceE
Confidence 11 111121111111111 0 011111 222233322 4579999999999999999999752 3332
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCC--EEEEcCCC
Q 011446 385 FYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN--VVINFDFP 435 (485)
Q Consensus 385 ~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~--~VI~~~~p 435 (485)
+..+.. ..|..+++.|++++..||++|+.+.+|||+++.. .||..++|
T Consensus 706 --l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LP 755 (850)
T TIGR01407 706 --LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLP 755 (850)
T ss_pred --EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCC
Confidence 233333 4788999999999999999999999999999876 46777765
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.87 E-value=2.9e-20 Score=195.41 Aligned_cols=297 Identities=15% Similarity=0.106 Sum_probs=178.1
Q ss_pred CcHHHHHHHHHHhc----------CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHh
Q 011446 143 PSPIQEESIPIALT----------GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELG 212 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~----------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~ 212 (485)
++.+|..++..+.. .+..+++++||||||++.+..+...+ ......++|+|+|+.+|..|+.+.+..+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 68899999887652 24699999999999998665554433 33345699999999999999999988875
Q ss_pred ccCCceEEEEECCCChHHHHHHhc-CCCeEEEEcchHHHHhhhcCcc--ccCCc-ceEEeeccccccCCCCHHHHHHHHH
Q 011446 213 KHLNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVC--ILKDC-SMLVMDEADKLLSPEFQPSVEQLIR 288 (485)
Q Consensus 213 ~~~~~~v~~~~g~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~~~~~~~--~l~~~-~~iViDEah~~~~~~~~~~~~~i~~ 288 (485)
.... .+..+...-...+. ....|+|+|..+|...+..... ..... .+||+||||+..... +...+.
T Consensus 318 ~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~----~~~~l~ 387 (667)
T TIGR00348 318 KDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE----LAKNLK 387 (667)
T ss_pred CCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH----HHHHHH
Confidence 3211 11112222222222 3468999999999864433211 11111 289999999864333 334443
Q ss_pred hCCCCCcEEEEecccchHHHHHHHHhcC---CCeEEee-ccccccccceE---EEEee----------------------
Q 011446 289 FLPANRQILMFSATFPVTVKDFKDKYLQ---KPYVINL-MDELTLKGITQ---YYAFV---------------------- 339 (485)
Q Consensus 289 ~~~~~~~~i~~SATl~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~---~~~~~---------------------- 339 (485)
..-++...++||||+-..........+. .+.+... .......+... +....
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~ 467 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLP 467 (667)
T ss_pred hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhh
Confidence 2334567899999974210000001111 0111110 00000000000 00000
Q ss_pred ---hhhh---------h-----------HHHHHHHHHhc------CCCcEEEEecChhHHHHHHHHHHHc-----CCeEE
Q 011446 340 ---EERQ---------K-----------VHCLNTLFSKL------QINQSIIFCNSVNRVELLAKKITEL-----GYSCF 385 (485)
Q Consensus 340 ---~~~~---------~-----------~~~l~~l~~~~------~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~ 385 (485)
.... + ......++.+. ..++++|||.++..|..+++.|.+. +...+
T Consensus 468 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~v 547 (667)
T TIGR00348 468 ERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAI 547 (667)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeE
Confidence 0000 0 00011111111 2378999999999999999998765 23455
Q ss_pred EEcCCCCHH---------------------HHHHHHHHHhc-CCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHH
Q 011446 386 YIHAKMLQD---------------------HRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLH 443 (485)
Q Consensus 386 ~~h~~~~~~---------------------~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Q 443 (485)
.+++....+ ....++++|++ +..+|||+++++.+|+|.|.+.+++...+..+ ..++|
T Consensus 548 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQ 626 (667)
T TIGR00348 548 VMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQ 626 (667)
T ss_pred EecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHH
Confidence 666553322 12468888976 67899999999999999999999887665555 46899
Q ss_pred Hhhhcccc
Q 011446 444 RVCWIQLS 451 (485)
Q Consensus 444 r~GRagR~ 451 (485)
.+||+.|.
T Consensus 627 ai~R~nR~ 634 (667)
T TIGR00348 627 AIARTNRI 634 (667)
T ss_pred HHHHhccc
Confidence 99999993
No 118
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.5e-20 Score=187.82 Aligned_cols=308 Identities=16% Similarity=0.145 Sum_probs=206.5
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 142 RPSPIQEESIPIALT----GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.+++||++.+.++.+ +.--|+..++|-|||.+.+.++-.......-...+|||||.. ++.||..++..+.. ..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~T-ii~qW~~E~~~w~p--~~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPAT-IIHQWMKEFQTWWP--PF 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHH-HHHHHHHHHHHhCc--ce
Confidence 467899999998874 455899999999999885444332222213335899999984 56788888888765 45
Q ss_pred eEEEEECCCCh----------HHHH---HHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHH
Q 011446 218 QVMVTTGGTSL----------KDDI---MRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVE 284 (485)
Q Consensus 218 ~v~~~~g~~~~----------~~~~---~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (485)
+|..+++.... ...+ .......+|+++|++.+.-. .+...--.++++|+||.|++-+.+-. +.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns~--is 357 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNSK--IS 357 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCccH--HH
Confidence 66667665542 1111 11123567999999977432 22233345799999999998765532 33
Q ss_pred HHHHhCCCCCcEEEEeccc-chHHHH------------------------------------------------------
Q 011446 285 QLIRFLPANRQILMFSATF-PVTVKD------------------------------------------------------ 309 (485)
Q Consensus 285 ~i~~~~~~~~~~i~~SATl-~~~~~~------------------------------------------------------ 309 (485)
..+..++. .+-|++|+|+ -..+.+
T Consensus 358 lackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 33444443 3346777774 000000
Q ss_pred -----------------------------------HH--------------------------HHhcCCCeEEeeccccc
Q 011446 310 -----------------------------------FK--------------------------DKYLQKPYVINLMDELT 328 (485)
Q Consensus 310 -----------------------------------~~--------------------------~~~~~~~~~~~~~~~~~ 328 (485)
+. ++.+++|....-..+..
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 00 01111111111100000
Q ss_pred cccceEEEEeehhhhhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHH-HcCCeEEEEcCCCCHHHHHHHHHHHhc
Q 011446 329 LKGITQYYAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKIT-ELGYSCFYIHAKMLQDHRNRVFHDFRN 405 (485)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~-~~~~~~~~~h~~~~~~~r~~i~~~f~~ 405 (485)
..+. .+...+....|+..+..++... ...++|+|..++.....+...|. ..++.++.+.|..+...|..++++|.+
T Consensus 517 ~~~~-D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne 595 (923)
T KOG0387|consen 517 KQGP-DYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNE 595 (923)
T ss_pred ccCC-CcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcC
Confidence 0000 0001223345777788877655 34599999999999999999998 579999999999999999999999997
Q ss_pred CCcc--EEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 406 GACR--NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 406 g~~~--vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+... .|++|.+.+-|+|+.+++.||.||+.|++++=.|..-||.|.|+.-...
T Consensus 596 ~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~ 650 (923)
T KOG0387|consen 596 DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVV 650 (923)
T ss_pred CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceE
Confidence 7633 5888999999999999999999999999999999999999999876664
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.87 E-value=5.3e-21 Score=193.14 Aligned_cols=296 Identities=16% Similarity=0.163 Sum_probs=193.7
Q ss_pred CCcHHHHHHHHHHh----cCC-CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011446 142 RPSPIQEESIPIAL----TGS-DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~----~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (485)
.++.+|..||..+. .|+ .+++++.||+|||..++. ++..|...+...++|+|+-+++|..|.+..+..+.....
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 58999999998766 343 499999999999998554 555555556666999999999999999888887765432
Q ss_pred ceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC-----ccccCCcceEEeeccccccCCCCHHHHHHHHHhCC
Q 011446 217 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-----VCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP 291 (485)
Q Consensus 217 ~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~-----~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~ 291 (485)
.+..+.+.. .. .++.|.++|..++...+... ......+++||+|||||- ....+..++..+.
T Consensus 244 -~~n~i~~~~-~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYFd 310 (875)
T COG4096 244 -KMNKIEDKK-GD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSILDYFD 310 (875)
T ss_pred -ceeeeeccc-CC-------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHHHHHH
Confidence 222222221 11 26799999999998866543 223445899999999984 4444556666654
Q ss_pred CCCcEEEEecccchHHHHHHHHhc-------------------CCCeEEeeccccccccce-------------------
Q 011446 292 ANRQILMFSATFPVTVKDFKDKYL-------------------QKPYVINLMDELTLKGIT------------------- 333 (485)
Q Consensus 292 ~~~~~i~~SATl~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~------------------- 333 (485)
.-. +++|||+...+..-...++ -.+..+.+.......++.
T Consensus 311 A~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd 388 (875)
T COG4096 311 AAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDD 388 (875)
T ss_pred HHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccc
Confidence 332 4559998653332222222 222222221111111110
Q ss_pred EEEEeeh----------hhhhHHHHHHHHHhc----CCCcEEEEecChhHHHHHHHHHHHc-----CCeEEEEcCCCCHH
Q 011446 334 QYYAFVE----------ERQKVHCLNTLFSKL----QINQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQD 394 (485)
Q Consensus 334 ~~~~~~~----------~~~~~~~l~~l~~~~----~~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~ 394 (485)
+.+...+ .......+..++... ..+++||||.+..+|+.+...|... +--+..+.++-.
T Consensus 389 ~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~-- 466 (875)
T COG4096 389 QNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE-- 466 (875)
T ss_pred ccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--
Confidence 0000000 111223344444442 1458999999999999999999875 234566666632
Q ss_pred HHHHHHHHHhcC--CccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcccc-Cccc
Q 011446 395 HRNRVFHDFRNG--ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLS-FSLS 455 (485)
Q Consensus 395 ~r~~i~~~f~~g--~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~-g~~~ 455 (485)
+-...++.|... --.|.|+.+++.+|||+|.|..++++..-.|..-|.|++||+-|. +.++
T Consensus 467 ~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~ 530 (875)
T COG4096 467 QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLG 530 (875)
T ss_pred hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCcccc
Confidence 233445556542 246888999999999999999999999999999999999999994 5555
No 120
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.3e-19 Score=186.68 Aligned_cols=298 Identities=18% Similarity=0.200 Sum_probs=200.6
Q ss_pred CCcHHHHHHHHHHhcC----CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 142 RPSPIQEESIPIALTG----SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.+++-|..++..+.+. ...++.|.||||||.+|+-.+-..+..+ ..+|+++|-++|..|+.+.++..+ +.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rF---g~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARF---GA 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHh---CC
Confidence 5788899999988766 5699999999999999988777777654 389999999999999888887766 46
Q ss_pred eEEEEECCCChHHHH----HHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeecccccc--CCC-CH--HHHHHHHH
Q 011446 218 QVMVTTGGTSLKDDI----MRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL--SPE-FQ--PSVEQLIR 288 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~----~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~--~~~-~~--~~~~~i~~ 288 (485)
++..++++-+..+.. +.......|+|+|-..+ ...++++++|||||-|.-. +.+ .+ ..-..++.
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 777788776654433 33346889999999876 4558899999999999532 221 11 11223344
Q ss_pred hCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccc---cccceEEEEeehhh-----hhHHHHHHHHHhc-CCCc
Q 011446 289 FLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELT---LKGITQYYAFVEER-----QKVHCLNTLFSKL-QINQ 359 (485)
Q Consensus 289 ~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~l~~l~~~~-~~~~ 359 (485)
....++++|+-|||+. ++.+....-.....+.+..... .+.+.......... -...++..+-+.. ...+
T Consensus 345 a~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ 422 (730)
T COG1198 345 AKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQ 422 (730)
T ss_pred HHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCe
Confidence 4456889999999976 4444443222222223322222 22221111111111 1123344443333 3347
Q ss_pred EEEEecChh------------------------------------------------------------HHHHHHHHHHH
Q 011446 360 SIIFCNSVN------------------------------------------------------------RVELLAKKITE 379 (485)
Q Consensus 360 ~lVf~~~~~------------------------------------------------------------~~~~l~~~L~~ 379 (485)
+|+|+|.+. .++.+.+.|.+
T Consensus 423 ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~ 502 (730)
T COG1198 423 VLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKR 502 (730)
T ss_pred EEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHH
Confidence 778776622 26777777776
Q ss_pred c--CCeEEEEcCCCCHH--HHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCC------------ChHHHHH
Q 011446 380 L--GYSCFYIHAKMLQD--HRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK------------NSETYLH 443 (485)
Q Consensus 380 ~--~~~~~~~h~~~~~~--~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~------------s~~~~~Q 443 (485)
. +..+..+.++.+.. .-+.+++.|.+|+.+|||.|.+++.|.|+|+++.|...+... ....+.|
T Consensus 503 ~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Q 582 (730)
T COG1198 503 LFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQ 582 (730)
T ss_pred HCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHH
Confidence 5 56788888876543 346789999999999999999999999999999976444321 2345688
Q ss_pred HhhhccccCcc
Q 011446 444 RVCWIQLSFSL 454 (485)
Q Consensus 444 r~GRagR~g~~ 454 (485)
-.|||||.+.-
T Consensus 583 vaGRAgR~~~~ 593 (730)
T COG1198 583 VAGRAGRAGKP 593 (730)
T ss_pred HHhhhccCCCC
Confidence 99999997433
No 121
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=4.9e-20 Score=166.11 Aligned_cols=185 Identities=37% Similarity=0.618 Sum_probs=150.3
Q ss_pred cCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011446 138 KGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (485)
.++..++++|.++++.+... +.+++.++||+|||+++..+++..+.... ..+++|++|+..++.|+...+........
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 45778999999999999998 99999999999999999998888877653 23899999999999999988888776554
Q ss_pred ceEEEEECCCChHHHHHHhcCCC-eEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCc
Q 011446 217 IQVMVTTGGTSLKDDIMRLYQPV-HLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ 295 (485)
Q Consensus 217 ~~v~~~~g~~~~~~~~~~~~~~~-~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~ 295 (485)
.......++.............. +++++|++.+.+..........+++++|+||||.+....+...+..++..++...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 162 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQ 162 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccce
Confidence 34444555555444444444555 99999999999988876666778999999999998766788888888888888899
Q ss_pred EEEEecccchHHHHHHHHhcCCCeEEee
Q 011446 296 ILMFSATFPVTVKDFKDKYLQKPYVINL 323 (485)
Q Consensus 296 ~i~~SATl~~~~~~~~~~~~~~~~~~~~ 323 (485)
++++|||++.........+......+..
T Consensus 163 ~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 163 LLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred EEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 9999999998888888888875544443
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=1.1e-19 Score=188.88 Aligned_cols=96 Identities=21% Similarity=0.356 Sum_probs=92.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcC--
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD-- 433 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~-- 433 (485)
...++||||++++.++.+++.|.+.++.+..+|+++++.+|.++++.|+.|...|||||+++++|+|+|++++||+++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 345899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ---CCCChHHHHHHhhhcccc
Q 011446 434 ---FPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 434 ---~p~s~~~~~Qr~GRagR~ 451 (485)
.|.+..+|+||+||+||.
T Consensus 521 ifG~p~~~~~~iqriGRagR~ 541 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN 541 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC
Confidence 799999999999999996
No 123
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=7.8e-21 Score=192.89 Aligned_cols=156 Identities=18% Similarity=0.131 Sum_probs=114.1
Q ss_pred CcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhc-cCCceEEE
Q 011446 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGK-HLNIQVMV 221 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~-~~~~~v~~ 221 (485)
|..+|.+.+..+-.+..++|+|||.+|||.+-...+-..+... ...-+|++.|+.+|+.|+......... ..-.....
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes-D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES-DSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc-CCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 6789999999999999999999999999988555544444444 444899999999999999765555442 22222222
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc---CccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEE
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK---GVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILM 298 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~---~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~ 298 (485)
+.|..+..- ....-.|+|+|+-|+-+..++.. .....+++.+||+||+|++.+..-...++.++...+ +.+++
T Consensus 591 l~g~ltqEY--sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--CP~L~ 666 (1330)
T KOG0949|consen 591 LLGDLTQEY--SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--CPFLV 666 (1330)
T ss_pred hHhhhhHHh--cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--CCeeE
Confidence 333322221 11123689999999988887766 344577899999999999988777777777777654 66899
Q ss_pred Eeccc
Q 011446 299 FSATF 303 (485)
Q Consensus 299 ~SATl 303 (485)
+|||+
T Consensus 667 LSATi 671 (1330)
T KOG0949|consen 667 LSATI 671 (1330)
T ss_pred Eeccc
Confidence 99997
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.2e-19 Score=188.10 Aligned_cols=306 Identities=15% Similarity=0.131 Sum_probs=204.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.++++|.-.--.+ .+.-|+.+.||+|||+++.+|++.....+ ..+-|++|+..||.+-++++..+...+|+++.+
T Consensus 82 ~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~G---~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 82 RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALSG---KGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 5677776554444 45578999999999999999998766543 378899999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcC------ccccCCcceEEeeccccccCC-------------C---
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLLSP-------------E--- 278 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~------~~~l~~~~~iViDEah~~~~~-------------~--- 278 (485)
+.++.+..+.... ..++|+|+|...| .+++... ......+.++||||+|.++=+ .
T Consensus 157 i~~~~~~~err~~--Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~ 234 (913)
T PRK13103 157 VTPFQPPEEKRAA--YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSK 234 (913)
T ss_pred ECCCCCHHHHHHH--hcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccchH
Confidence 9887765554433 3489999999876 1222211 223477899999999987600 0
Q ss_pred CHHHHHHHHHhCC-------------------------------------------------------------------
Q 011446 279 FQPSVEQLIRFLP------------------------------------------------------------------- 291 (485)
Q Consensus 279 ~~~~~~~i~~~~~------------------------------------------------------------------- 291 (485)
....+..++..+.
T Consensus 235 ~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL 314 (913)
T PRK13103 235 LYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGL 314 (913)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHH
Confidence 0000001100000
Q ss_pred -------CC-------------------------------------------------------------CcEEEEeccc
Q 011446 292 -------AN-------------------------------------------------------------RQILMFSATF 303 (485)
Q Consensus 292 -------~~-------------------------------------------------------------~~~i~~SATl 303 (485)
.+ .++-+||+|.
T Consensus 315 ~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa 394 (913)
T PRK13103 315 RAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTA 394 (913)
T ss_pred HHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCC
Confidence 00 1445666666
Q ss_pred chHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHH-HHHHhc-CCCcEEEEecChhHHHHHHHHHHHcC
Q 011446 304 PVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLN-TLFSKL-QINQSIIFCNSVNRVELLAKKITELG 381 (485)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~ 381 (485)
.....+|..-|--+-..+..............+ +.....|...+. .+...+ ...|+||-|.|++..+.|+..|.+.+
T Consensus 395 ~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~v-y~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g 473 (913)
T PRK13103 395 DTEAFEFRQIYGLDVVVIPPNKPLARKDFNDLV-YLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEG 473 (913)
T ss_pred HHHHHHHHHHhCCCEEECCCCCCcccccCCCeE-EcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 555555544443332222222222222222222 333444544444 444333 45599999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcC-CccEEEEccccccCCCCC------------------------------------
Q 011446 382 YSCFYIHAKMLQDHRNRVFHDFRNG-ACRNLVCTDLFTRGIDIQ------------------------------------ 424 (485)
Q Consensus 382 ~~~~~~h~~~~~~~r~~i~~~f~~g-~~~vlvaT~~~~~Gidi~------------------------------------ 424 (485)
+..-.+++.....+ ..|+. ..| .-.|.||||+|+||.||.
T Consensus 474 i~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e 550 (913)
T PRK13103 474 IEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIE 550 (913)
T ss_pred CcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 98888888744332 33433 345 345999999999999995
Q ss_pred -CCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 425 -AVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 425 -~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+=-|||-...+.|..-=.|-.|||||-|.-|...
T Consensus 551 ~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 551 AGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred cCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 2237998899999999999999999998877764
No 125
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1.6e-20 Score=178.40 Aligned_cols=291 Identities=18% Similarity=0.198 Sum_probs=191.9
Q ss_pred CCCcHHHHHHHHHHhcC---CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 141 ERPSPIQEESIPIALTG---SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~---~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
..++|||..++..+..+ +.-||+.|+|+|||++-+-++. .+ +.++||+|.+...++||...++.+..--+-
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti-----kK~clvLcts~VSVeQWkqQfk~wsti~d~ 374 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI-----KKSCLVLCTSAVSVEQWKQQFKQWSTIQDD 374 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee-----cccEEEEecCccCHHHHHHHHHhhcccCcc
Confidence 46899999999999865 5689999999999987433222 11 237899999999999999998888766566
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC--------ccccCCcceEEeeccccccCCCCHHHHHHHHHh
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--------VCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF 289 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~--------~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~ 289 (485)
.+..++.+... ....++.|+|+|+.++..--++. .+.-..+.++++||+|.+-..-|+..+. .
T Consensus 375 ~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls----i 445 (776)
T KOG1123|consen 375 QICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS----I 445 (776)
T ss_pred ceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH----H
Confidence 66666655432 22367899999998775421110 1113467899999999875555554444 3
Q ss_pred CCCCCcEEEEecccchHHHHHHH-HhcCCC--------------eEEee-------------ccccccccc-eEEEEeeh
Q 011446 290 LPANRQILMFSATFPVTVKDFKD-KYLQKP--------------YVINL-------------MDELTLKGI-TQYYAFVE 340 (485)
Q Consensus 290 ~~~~~~~i~~SATl~~~~~~~~~-~~~~~~--------------~~~~~-------------~~~~~~~~~-~~~~~~~~ 340 (485)
...+++ +++|||+-.+-..+.. .|+-.| .+..+ ..++-..+. .....++.
T Consensus 446 v~aHcK-LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvM 524 (776)
T KOG1123|consen 446 VQAHCK-LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVM 524 (776)
T ss_pred HHHHhh-ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeec
Confidence 444444 8999997321111110 011111 11110 000000000 00111122
Q ss_pred hhhhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcC-CccEEEEcccc
Q 011446 341 ERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG-ACRNLVCTDLF 417 (485)
Q Consensus 341 ~~~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g-~~~vlvaT~~~ 417 (485)
...|.....-+++.+ ...++|||..+.-....++-.| .-.+++|..++.+|.+|++.|+-+ .+.-++.+.+.
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl-----~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc-----CCceEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 233444444444332 5569999999987777777665 335789999999999999999854 56778889999
Q ss_pred ccCCCCCCCCEEEEcCCC-CChHHHHHHhhhccccC
Q 011446 418 TRGIDIQAVNVVINFDFP-KNSETYLHRVCWIQLSF 452 (485)
Q Consensus 418 ~~Gidi~~v~~VI~~~~p-~s~~~~~Qr~GRagR~g 452 (485)
.++||+|.++++|+...- .|..+-.||.||.-|+-
T Consensus 600 DtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred CccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 999999999999987664 57788899999999963
No 126
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.83 E-value=5.3e-19 Score=169.91 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=110.4
Q ss_pred HHHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCC
Q 011446 345 VHCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI 423 (485)
Q Consensus 345 ~~~l~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi 423 (485)
.+++..+.... ...++||-+-|++.++.|.++|.+.|+++.++|++...-+|.+|+...+.|.++|||.-|.+-+|+|+
T Consensus 433 dDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDi 512 (663)
T COG0556 433 DDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDL 512 (663)
T ss_pred HHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCC
Confidence 34444444433 34599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCC-----CCChHHHHHHhhhccc--cCcccccchHHHHHHHHHhhcc
Q 011446 424 QAVNVVINFDF-----PKNSETYLHRVCWIQL--SFSLSLPNLQFMCSMLMYICFT 472 (485)
Q Consensus 424 ~~v~~VI~~~~-----p~s~~~~~Qr~GRagR--~g~~~~~~~~~~~~~~~~~~~~ 472 (485)
|.|.+|..+|. ..|-.+.+|-+|||.| .|++..+...-..++.+.+..+
T Consensus 513 PEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~ET 568 (663)
T COG0556 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDET 568 (663)
T ss_pred cceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHHHH
Confidence 99999998875 5588999999999999 4888888766666666665554
No 127
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=2e-18 Score=177.29 Aligned_cols=306 Identities=15% Similarity=0.121 Sum_probs=202.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+++|.-.--.+..| -|..+.||-|||+++.+|++-....+. .|-|++..--||..-++++..+...+|+.|++
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gk---gVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~ 152 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGK---GVIVSTVNEYLAERDAEEMGKVFNFLGLSVGI 152 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCC---ceEEEecchhhhhhhHHHHHHHHHHhCCceee
Confidence 6788887776665544 579999999999999999876544432 56677788889988888999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHH-hhhcC------ccccCCcceEEeeccccccCC----------------C
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILD-LSKKG------VCILKDCSMLVMDEADKLLSP----------------E 278 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~-~~~~~------~~~l~~~~~iViDEah~~~~~----------------~ 278 (485)
...+....+... ...++|+|+|...|-- ++... ......+.+.||||||.++=+ .
T Consensus 153 i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~ 230 (925)
T PRK12903 153 NKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSN 230 (925)
T ss_pred eCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchH
Confidence 887665544333 3468999999987632 22211 223467789999999977510 0
Q ss_pred CHHHHHHHHHhCCC------------------------------------------------------------------
Q 011446 279 FQPSVEQLIRFLPA------------------------------------------------------------------ 292 (485)
Q Consensus 279 ~~~~~~~i~~~~~~------------------------------------------------------------------ 292 (485)
+......++..+..
T Consensus 231 ~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V 310 (925)
T PRK12903 231 LYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKI 310 (925)
T ss_pred HHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEE
Confidence 11111111221110
Q ss_pred --------------------------------------------------CCcEEEEecccchHHHHHHHHhcCCCeEEe
Q 011446 293 --------------------------------------------------NRQILMFSATFPVTVKDFKDKYLQKPYVIN 322 (485)
Q Consensus 293 --------------------------------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~~~~ 322 (485)
-.++-+||+|...+..+|..-|.-+-..+.
T Consensus 311 ~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IP 390 (925)
T PRK12903 311 ELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVP 390 (925)
T ss_pred EEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECC
Confidence 014556777766555555554433322221
Q ss_pred eccccccccceEEEEeehhhhhHHHHHH-HHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHH
Q 011446 323 LMDELTLKGITQYYAFVEERQKVHCLNT-LFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF 400 (485)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~ 400 (485)
............. .+.....|...+.. +...+ ...|+||.|.+++.++.|+..|.+.|+..-.+++.-...+ ..|+
T Consensus 391 TnkP~~R~D~~d~-iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~E-A~II 468 (925)
T PRK12903 391 TNKPVIRKDEPDS-IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNARE-AEII 468 (925)
T ss_pred CCCCeeeeeCCCc-EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhH-HHHH
Confidence 1111111111111 22334444444443 44333 4559999999999999999999999999999998743222 3333
Q ss_pred HHHhcC-CccEEEEccccccCCCCCCCC--------EEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 401 HDFRNG-ACRNLVCTDLFTRGIDIQAVN--------VVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 401 ~~f~~g-~~~vlvaT~~~~~Gidi~~v~--------~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
. ..| .-.|.|||++|+||.||.--. |||....|.|..--.|-.|||||-|.-|...
T Consensus 469 a--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 469 A--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESR 533 (925)
T ss_pred H--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcce
Confidence 3 345 346999999999999997432 8999999999999999999999998888653
No 128
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.82 E-value=1.4e-18 Score=177.95 Aligned_cols=316 Identities=13% Similarity=0.106 Sum_probs=195.4
Q ss_pred CCcHHHHHHHHHHhcC----------CCEEEEccCCCchhHHhHHHHHhhhhccCCc----eEEEEEcCcHHHHHHHHHH
Q 011446 142 RPSPIQEESIPIALTG----------SDILARAKNGTGKTAAFCIPALEKIDQDNNV----IQVVILVPTRELALQTSQV 207 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~----------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~----~~~lil~P~~~la~q~~~~ 207 (485)
.++|+|.+.+..+... ..+|+...+|+|||++.+..+..++...+.. .+.|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 4799999999987742 2389999999999999666666666554441 478999997 566777777
Q ss_pred HHHHhccCCceEEEEECCCCh--HHH-----HHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCH
Q 011446 208 CKELGKHLNIQVMVTTGGTSL--KDD-----IMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ 280 (485)
Q Consensus 208 ~~~~~~~~~~~v~~~~g~~~~--~~~-----~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~ 280 (485)
+.++.....+....+++..+. ... .....-..-+++.+++.+.+.... ..+..++++|+||.|++-+..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~~-- 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNSD-- 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccchh--
Confidence 777765445666667776653 000 001112346788888888765553 346688999999999976543
Q ss_pred HHHHHHHHhCCCCCcEEEEecccc----------------------------------------------------hHHH
Q 011446 281 PSVEQLIRFLPANRQILMFSATFP----------------------------------------------------VTVK 308 (485)
Q Consensus 281 ~~~~~i~~~~~~~~~~i~~SATl~----------------------------------------------------~~~~ 308 (485)
..+...+..+...+ -|++|+|+= .++.
T Consensus 393 s~~~kaL~~l~t~r-RVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~ 471 (776)
T KOG0390|consen 393 SLTLKALSSLKTPR-RVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELR 471 (776)
T ss_pred hHHHHHHHhcCCCc-eEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHH
Confidence 22344455554444 488899960 0011
Q ss_pred HHHHHhcC------------CCeEEeec-c--------------c--------------------cccccce--------
Q 011446 309 DFKDKYLQ------------KPYVINLM-D--------------E--------------------LTLKGIT-------- 333 (485)
Q Consensus 309 ~~~~~~~~------------~~~~~~~~-~--------------~--------------------~~~~~~~-------- 333 (485)
++...++. .-....+. . . ...+.+.
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~ 551 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEK 551 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccc
Confidence 12222110 00000000 0 0 0000000
Q ss_pred -----------------EEEEeehhhhhHHHHHHHHHhcCCCcEEE---EecChhHHHHHHHH-HHHcCCeEEEEcCCCC
Q 011446 334 -----------------QYYAFVEERQKVHCLNTLFSKLQINQSII---FCNSVNRVELLAKK-ITELGYSCFYIHAKML 392 (485)
Q Consensus 334 -----------------~~~~~~~~~~~~~~l~~l~~~~~~~~~lV---f~~~~~~~~~l~~~-L~~~~~~~~~~h~~~~ 392 (485)
..........++..|..++.... .++++ ++........+.+. +.-.|+.++.+||.|+
T Consensus 552 e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~-ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 552 EKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIR-EKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred cccccChHhhhcccccccccccchhhhHHHHHHHHHHHHh-hhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 00000001223333444432211 22333 33333333333333 3345999999999999
Q ss_pred HHHHHHHHHHHhcC--Ccc-EEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccchHHHHH
Q 011446 393 QDHRNRVFHDFRNG--ACR-NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPNLQFMCS 464 (485)
Q Consensus 393 ~~~r~~i~~~f~~g--~~~-vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~~~~~~~ 464 (485)
..+|..+++.|.+. ... .|.+|.+.+.||++-++..||.||+.|+++.-.|.++||.|.|+...-+.+++.+
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLla 705 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLA 705 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeec
Confidence 99999999999753 323 4667889999999999999999999999999999999999999987766554444
No 129
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=5e-19 Score=170.53 Aligned_cols=318 Identities=13% Similarity=0.059 Sum_probs=216.4
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH---hc
Q 011446 137 EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL---GK 213 (485)
Q Consensus 137 ~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~---~~ 213 (485)
++.-+..+.+|.+++..+-.|+++++.-.|.+||++|+.+.....+...... ..+++.|+.+++....+.+.-. .+
T Consensus 281 ~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~V~~~~I~ 359 (1034)
T KOG4150|consen 281 KNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT-NSLLPSEMVEHLRNGSKGQVVHVEVIK 359 (1034)
T ss_pred cccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc-ceecchhHHHHhhccCCceEEEEEehh
Confidence 3455678899999999999999999999999999999999887766554433 6788999999876543321111 11
Q ss_pred cCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhh----cCccccCCcceEEeeccccccCC---CCHHHHHHH
Q 011446 214 HLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSK----KGVCILKDCSMLVMDEADKLLSP---EFQPSVEQL 286 (485)
Q Consensus 214 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~----~~~~~l~~~~~iViDEah~~~~~---~~~~~~~~i 286 (485)
...-.++..+.+..........+.+.+++++.|..+..... .+...+-...++++||+|-++.. .....++.+
T Consensus 360 ~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L 439 (1034)
T KOG4150|consen 360 ARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRAL 439 (1034)
T ss_pred hhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHH
Confidence 11223444555555555556667788999999998765322 23333445578999999965431 122233333
Q ss_pred HHhC-----CCCCcEEEEecccchHHHHHHHHhcCC-CeEEeeccccccccceEEEEeeh---------hhhhHHHHHHH
Q 011446 287 IRFL-----PANRQILMFSATFPVTVKDFKDKYLQK-PYVINLMDELTLKGITQYYAFVE---------ERQKVHCLNTL 351 (485)
Q Consensus 287 ~~~~-----~~~~~~i~~SATl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~l 351 (485)
+..+ ..+.+++-.|||+...+......+.-+ -..+....+.. ...+++.+-+ ...+......+
T Consensus 440 ~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs--~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~ 517 (1034)
T KOG4150|consen 440 SDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS--SEKLFVLWNPSAPPTSKSEKSSKVVEVSHL 517 (1034)
T ss_pred HHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC--ccceEEEeCCCCCCcchhhhhhHHHHHHHH
Confidence 3322 346789999999876555444433222 22333333322 2333333321 11222222233
Q ss_pred HHhc--CCCcEEEEecChhHHHHHHHHHHHc----C----CeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCC
Q 011446 352 FSKL--QINQSIIFCNSVNRVELLAKKITEL----G----YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI 421 (485)
Q Consensus 352 ~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~----~----~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gi 421 (485)
+... ..-++|-||++++.|+.+....+.. + -.+..|.|+...++|.+|....-.|+..-+|||++++-||
T Consensus 518 ~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGI 597 (1034)
T KOG4150|consen 518 FAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGI 597 (1034)
T ss_pred HHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcc
Confidence 3322 2348999999999999876655432 1 1356788999999999999988899999999999999999
Q ss_pred CCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 422 DIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 422 di~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
||..++.|++.++|.|.+++.|..|||||..+-.+.
T Consensus 598 DIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 598 DIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLA 633 (1034)
T ss_pred ccccceeEEEccCchhHHHHHHHhccccccCCCceE
Confidence 999999999999999999999999999997655443
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.80 E-value=3.3e-17 Score=175.36 Aligned_cols=286 Identities=19% Similarity=0.213 Sum_probs=175.3
Q ss_pred cCCCCCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHH-HHHHHHh
Q 011446 138 KGFERPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS-QVCKELG 212 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~-~~~~~~~ 212 (485)
.|| ..++-|.+.+..+. ++..+++.|+||+|||++|++|++... .+.++||++||++|+.|+. +.+..+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 355 57999988554433 467799999999999999999988754 2358999999999999994 6777777
Q ss_pred ccCCceEEEEECCCChHH-----H--------------------------------------------------------
Q 011446 213 KHLNIQVMVTTGGTSLKD-----D-------------------------------------------------------- 231 (485)
Q Consensus 213 ~~~~~~v~~~~g~~~~~~-----~-------------------------------------------------------- 231 (485)
+.+++++..+.|+.+.-. +
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 767777766666543210 0
Q ss_pred ----------HHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC-----CCH-------HH-------
Q 011446 232 ----------IMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP-----EFQ-------PS------- 282 (485)
Q Consensus 232 ----------~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~-----~~~-------~~------- 282 (485)
.+.-...++|+|+....|...+.... .+..++++||||||.+.+. ... ..
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 00001157899999988777654433 3678999999999987420 000 00
Q ss_pred ------------------------------------HHH-------H--------HHhC---------------------
Q 011446 283 ------------------------------------VEQ-------L--------IRFL--------------------- 290 (485)
Q Consensus 283 ------------------------------------~~~-------i--------~~~~--------------------- 290 (485)
+.. + ...+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 000 0 0000
Q ss_pred ---------------CCCCcEEEEecccchH-HHHHHHHhcCCCeEEeeccccccccceEEEEe--eh------hhhh--
Q 011446 291 ---------------PANRQILMFSATFPVT-VKDFKDKYLQKPYVINLMDELTLKGITQYYAF--VE------ERQK-- 344 (485)
Q Consensus 291 ---------------~~~~~~i~~SATl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~-- 344 (485)
+....+|++|||++.. ...+...+.- +.............-...+.. .+ ...-
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl-~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~ 634 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGF-EEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAE 634 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCC-CccceecCCCChHHccEEEeCCCCCCCCCCChHHHHH
Confidence 0113578999998521 1123332221 111111111111111111110 01 1111
Q ss_pred --HHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCC
Q 011446 345 --VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID 422 (485)
Q Consensus 345 --~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gid 422 (485)
...+..+. ...+++||+++|.+..+.+++.|....+.+ ...|.-. .+..++++|+.++..||++|..+.+|||
T Consensus 635 ~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD 709 (820)
T PRK07246 635 EIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVD 709 (820)
T ss_pred HHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCC
Confidence 12222333 346899999999999999999997665444 4444221 2566899999998899999999999999
Q ss_pred CCC--CCEEEEcCCC
Q 011446 423 IQA--VNVVINFDFP 435 (485)
Q Consensus 423 i~~--v~~VI~~~~p 435 (485)
+|+ ...||...+|
T Consensus 710 ~p~~~~~~viI~kLP 724 (820)
T PRK07246 710 FVQADRMIEVITRLP 724 (820)
T ss_pred CCCCCeEEEEEecCC
Confidence 974 5556766765
No 131
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.79 E-value=1.7e-17 Score=173.85 Aligned_cols=96 Identities=21% Similarity=0.318 Sum_probs=91.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCC-
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF- 434 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~- 434 (485)
...++||||++.+.++.+++.|...++.+..+|+++++.+|..+++.|+.|...|+|||+++++|+|+|++++||+++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred ----CCChHHHHHHhhhcccc
Q 011446 435 ----PKNSETYLHRVCWIQLS 451 (485)
Q Consensus 435 ----p~s~~~~~Qr~GRagR~ 451 (485)
|.+..+|+||+||+||.
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred ccccCCCHHHHHHHhccccCC
Confidence 78999999999999996
No 132
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.79 E-value=2e-18 Score=172.56 Aligned_cols=309 Identities=16% Similarity=0.184 Sum_probs=204.2
Q ss_pred CcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 143 PSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 143 ~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
+.+||.-.++++. .+-+.|+..++|-|||.+ +++.|.++.+.+..+.=|||||+..| ..|.+++.+++. .++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCP--sl~ 475 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCP--SLK 475 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCC--ceE
Confidence 6789999998765 344689999999999988 44556666665555567999999887 333444444443 467
Q ss_pred EEEEECCCChHHHHHHhc----CCCeEEEEcchHHHHhhh-cCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCC
Q 011446 219 VMVTTGGTSLKDDIMRLY----QPVHLLVGTPGRILDLSK-KGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPAN 293 (485)
Q Consensus 219 v~~~~g~~~~~~~~~~~~----~~~~Ili~Tp~~l~~~~~-~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 293 (485)
|...+|....+.+++... .+.+|+++|+.....--. +..+.-.+++++|+||+|.+-+.. ...|..++. ++.+
T Consensus 476 Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~-I~An 553 (941)
T KOG0389|consen 476 VEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMS-INAN 553 (941)
T ss_pred EEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcc-cccc
Confidence 888888887666554432 368999999986542111 111223467899999999876644 333444443 2333
Q ss_pred CcEEEEeccc-chHHHH---------------------------------------------------------------
Q 011446 294 RQILMFSATF-PVTVKD--------------------------------------------------------------- 309 (485)
Q Consensus 294 ~~~i~~SATl-~~~~~~--------------------------------------------------------------- 309 (485)
. .|++|+|+ -.++.+
T Consensus 554 ~-RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qV 632 (941)
T KOG0389|consen 554 F-RLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQV 632 (941)
T ss_pred c-eEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3 47788884 000000
Q ss_pred --------------------------------------------------------------------------HHHHhc
Q 011446 310 --------------------------------------------------------------------------FKDKYL 315 (485)
Q Consensus 310 --------------------------------------------------------------------------~~~~~~ 315 (485)
+++..+
T Consensus 633 L~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il 712 (941)
T KOG0389|consen 633 LKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRIL 712 (941)
T ss_pred HHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHh
Confidence 000000
Q ss_pred CCCeEEeeccccc------------------cccceEEE---EeehhhhhHHHHHHHHHhcC--CCcEEEEecChhHHHH
Q 011446 316 QKPYVINLMDELT------------------LKGITQYY---AFVEERQKVHCLNTLFSKLQ--INQSIIFCNSVNRVEL 372 (485)
Q Consensus 316 ~~~~~~~~~~~~~------------------~~~~~~~~---~~~~~~~~~~~l~~l~~~~~--~~~~lVf~~~~~~~~~ 372 (485)
..|.+-....... .+.+..+. ...-...|...|..++.+.. ..+||||..-....+.
T Consensus 713 ~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDI 792 (941)
T KOG0389|consen 713 NEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDI 792 (941)
T ss_pred CchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHH
Confidence 0000000000000 00000000 00001234455666665542 3599999999999999
Q ss_pred HHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCC--ccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccc
Q 011446 373 LAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA--CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQL 450 (485)
Q Consensus 373 l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~--~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR 450 (485)
|...|..+++....+.|...-..|..+++.|..++ .-+|++|.+.+.|||+..+++||.+|+.-++-+=.|.--||.|
T Consensus 793 LE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHR 872 (941)
T KOG0389|consen 793 LEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHR 872 (941)
T ss_pred HHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHh
Confidence 99999999999999999999999999999998764 3468899999999999999999999999999888999999999
Q ss_pred cCcccccc
Q 011446 451 SFSLSLPN 458 (485)
Q Consensus 451 ~g~~~~~~ 458 (485)
.|+.....
T Consensus 873 vGQtkpVt 880 (941)
T KOG0389|consen 873 VGQTKPVT 880 (941)
T ss_pred hCCcceeE
Confidence 99877664
No 133
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.78 E-value=2.5e-18 Score=163.39 Aligned_cols=306 Identities=14% Similarity=0.163 Sum_probs=204.3
Q ss_pred CCCCcHHHHHHHHHHhc-CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 140 FERPSPIQEESIPIALT-GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
+..+.|+|++.+...++ |..+++..++|-|||++++.-+..+..+. ..||+||.. +-..|.+.+.++......
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw----plliVcPAs-vrftWa~al~r~lps~~p- 269 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW----PLLIVCPAS-VRFTWAKALNRFLPSIHP- 269 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC----cEEEEecHH-HhHHHHHHHHHhcccccc-
Confidence 34578999999987664 56799999999999999764443333332 689999985 456677788887766544
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEE
Q 011446 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILM 298 (485)
Q Consensus 219 v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~ 298 (485)
+.++.++.+.. ..+.....|.|.+++.+..+-. .+.-..+.+||+||.|.+-+. -....+.++..+..-..+|+
T Consensus 270 i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 270 IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred eEEEecccCCc---cccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhcc-chhhhhhhhhHHHHhhheEE
Confidence 44555544432 1122345789999998765433 222345899999999976443 23335555555555567899
Q ss_pred Eecccc-------------------hHHHHHHHHhcCCCe---EEeec--------------------------cccccc
Q 011446 299 FSATFP-------------------VTVKDFKDKYLQKPY---VINLM--------------------------DELTLK 330 (485)
Q Consensus 299 ~SATl~-------------------~~~~~~~~~~~~~~~---~~~~~--------------------------~~~~~~ 330 (485)
+|+|+. ++-.+|...|+.-.. ..... ...+..
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK 423 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK 423 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999961 112223333322110 00000 000000
Q ss_pred cceEEEEeeh--------------------------------------hhhhHHHHHHHHHh------cCCCcEEEEecC
Q 011446 331 GITQYYAFVE--------------------------------------ERQKVHCLNTLFSK------LQINQSIIFCNS 366 (485)
Q Consensus 331 ~~~~~~~~~~--------------------------------------~~~~~~~l~~l~~~------~~~~~~lVf~~~ 366 (485)
.+.+.+.. ...|...+.+.+.. .+..+.+|||..
T Consensus 424 --rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH 501 (689)
T KOG1000|consen 424 --RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHH 501 (689)
T ss_pred --ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehh
Confidence 11111110 01112222222222 234589999999
Q ss_pred hhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcC-CccE-EEEccccccCCCCCCCCEEEEcCCCCChHHHHHH
Q 011446 367 VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG-ACRN-LVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHR 444 (485)
Q Consensus 367 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g-~~~v-lvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr 444 (485)
....+.+...+.+.++..+.+.|..++.+|....+.|..+ +.+| +++-.++++|+|+...+.|++..+++++.-.+|.
T Consensus 502 ~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQA 581 (689)
T KOG1000|consen 502 QIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQA 581 (689)
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEec
Confidence 9999999999999999999999999999999999999865 4454 6677889999999999999999999999999999
Q ss_pred hhhccccCcccccch
Q 011446 445 VCWIQLSFSLSLPNL 459 (485)
Q Consensus 445 ~GRagR~g~~~~~~~ 459 (485)
=-|+.|.|+......
T Consensus 582 EDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 582 EDRAHRIGQKSSVFV 596 (689)
T ss_pred hhhhhhccccceeeE
Confidence 999999988776643
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.78 E-value=6.3e-17 Score=167.40 Aligned_cols=273 Identities=17% Similarity=0.166 Sum_probs=176.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+++|.-+.-.+ .+.-|+.+.||.|||+++.+|++-.... +..|-|++++..||..-++++..+...+|+.+++
T Consensus 76 r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~ 150 (870)
T CHL00122 76 RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGL 150 (870)
T ss_pred CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 4777887665444 4568999999999999999998644433 3367889999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHH-----Hhhh--cCccccCCcceEEeeccccccCCC----------------
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRIL-----DLSK--KGVCILKDCSMLVMDEADKLLSPE---------------- 278 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~-----~~~~--~~~~~l~~~~~iViDEah~~~~~~---------------- 278 (485)
..++.+..+.... ..++|+|+|...|- +.+. ........+.++||||||.++=+.
T Consensus 151 i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~ 228 (870)
T CHL00122 151 IQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNID 228 (870)
T ss_pred eCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCccchH
Confidence 8887776544333 46899999997553 2221 112234668899999999775000
Q ss_pred CHHHHHHHHHhCCC------------------------------------------------------------------
Q 011446 279 FQPSVEQLIRFLPA------------------------------------------------------------------ 292 (485)
Q Consensus 279 ~~~~~~~i~~~~~~------------------------------------------------------------------ 292 (485)
.......+...+..
T Consensus 229 ~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV 308 (870)
T CHL00122 229 KYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEI 308 (870)
T ss_pred HHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEE
Confidence 00000011111100
Q ss_pred --------------------------------------------------CCcEEEEecccchHHHHHHHHhcCCCeEEe
Q 011446 293 --------------------------------------------------NRQILMFSATFPVTVKDFKDKYLQKPYVIN 322 (485)
Q Consensus 293 --------------------------------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~~~~ 322 (485)
-.++.+||+|......+|..-|.-+-..+.
T Consensus 309 ~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IP 388 (870)
T CHL00122 309 IIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIP 388 (870)
T ss_pred EEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECC
Confidence 015667888876655555554443322222
Q ss_pred eccccccccceEEEEeehhhhhHH-HHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCC-CHHHHHHH
Q 011446 323 LMDELTLKGITQYYAFVEERQKVH-CLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM-LQDHRNRV 399 (485)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~-~~~~r~~i 399 (485)
.............+ +.....|.. .+..+...+ ...|+||-|.|++..+.++..|.+.+++.-.+++.- ..+.=..|
T Consensus 389 tnkp~~R~d~~d~v-~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~I 467 (870)
T CHL00122 389 THRPMLRKDLPDLI-YKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEI 467 (870)
T ss_pred CCCCccceeCCCeE-EeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHH
Confidence 21222122222122 233333433 444455544 445999999999999999999999999999999873 22333344
Q ss_pred HHHHhcCC-ccEEEEccccccCCCCC
Q 011446 400 FHDFRNGA-CRNLVCTDLFTRGIDIQ 424 (485)
Q Consensus 400 ~~~f~~g~-~~vlvaT~~~~~Gidi~ 424 (485)
+.. .|. -.|.|||++|+||.||.
T Consensus 468 IA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 468 VAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred HHh--cCCCCcEEEeccccCCCcCee
Confidence 443 454 45999999999999985
No 135
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.77 E-value=3.2e-17 Score=170.36 Aligned_cols=313 Identities=16% Similarity=0.206 Sum_probs=209.6
Q ss_pred CcHHHHHHHHHHhc----CCCEEEEccCCCchhHHhHHHHHhhhhccC------CceEEEEEcCcHHHHHHHHHHHHHHh
Q 011446 143 PSPIQEESIPIALT----GSDILARAKNGTGKTAAFCIPALEKIDQDN------NVIQVVILVPTRELALQTSQVCKELG 212 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~------~~~~~lil~P~~~la~q~~~~~~~~~ 212 (485)
++.||++.++++.- +-+-|++..+|-|||++.+-.+....+.+. .....||+||+ .|+--|..++.+++
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 67899999997652 346899999999999986544433333321 22458999997 67777888888887
Q ss_pred ccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCC
Q 011446 213 KHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA 292 (485)
Q Consensus 213 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~ 292 (485)
.. +++....|....+...+.-.+..+|+|++++.+.+-... +.-..+.++|+||-|-+-+. ...+.+.++.+..
T Consensus 1055 pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a 1128 (1549)
T KOG0392|consen 1055 PF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRA 1128 (1549)
T ss_pred ch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHhh
Confidence 76 567777887776666555556789999999988653321 11235789999999976552 3334455555655
Q ss_pred CCcEEEEeccc---------------------------------------------------------------------
Q 011446 293 NRQILMFSATF--------------------------------------------------------------------- 303 (485)
Q Consensus 293 ~~~~i~~SATl--------------------------------------------------------------------- 303 (485)
+.+ +.+|+|+
T Consensus 1129 ~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRl 1207 (1549)
T KOG0392|consen 1129 NHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRL 1207 (1549)
T ss_pred cce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 555 7788885
Q ss_pred --------chH----------------HHHHHHH--------------------------------hcCCCeEEeecccc
Q 011446 304 --------PVT----------------VKDFKDK--------------------------------YLQKPYVINLMDEL 327 (485)
Q Consensus 304 --------~~~----------------~~~~~~~--------------------------------~~~~~~~~~~~~~~ 327 (485)
|+. .+++..+ .+++|..+......
T Consensus 1208 KedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp 1287 (1549)
T KOG0392|consen 1208 KEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHP 1287 (1549)
T ss_pred HHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcc
Confidence 000 0000000 01111110000000
Q ss_pred cc----ccceE---EEEeehhhhhHHHHHHHHHhc----------------CCCcEEEEecChhHHHHHHHHHHHc---C
Q 011446 328 TL----KGITQ---YYAFVEERQKVHCLNTLFSKL----------------QINQSIIFCNSVNRVELLAKKITEL---G 381 (485)
Q Consensus 328 ~~----~~~~~---~~~~~~~~~~~~~l~~l~~~~----------------~~~~~lVf~~~~~~~~~l~~~L~~~---~ 381 (485)
.. ..+.+ -.+.+....|+..|..++..- ...++||||.-+..++.+.+.|.+. .
T Consensus 1288 ~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mps 1367 (1549)
T KOG0392|consen 1288 DLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPS 1367 (1549)
T ss_pred hHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCc
Confidence 00 00000 000001233556666666542 1237999999999999999888765 3
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcC-CccEE-EEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccch
Q 011446 382 YSCFYIHAKMLQDHRNRVFHDFRNG-ACRNL-VCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPNL 459 (485)
Q Consensus 382 ~~~~~~h~~~~~~~r~~i~~~f~~g-~~~vl-vaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~~ 459 (485)
+....+.|..++.+|.++.++|.++ .++|| ++|-+.+-|+|+.+++.||+++=.|++-.-.|.+-||.|.|+..-.+.
T Consensus 1368 VtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNV 1447 (1549)
T KOG0392|consen 1368 VTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNV 1447 (1549)
T ss_pred eeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeee
Confidence 4556899999999999999999998 67764 578899999999999999999999999999999999999999877764
Q ss_pred HHHH
Q 011446 460 QFMC 463 (485)
Q Consensus 460 ~~~~ 463 (485)
.+++
T Consensus 1448 yRlI 1451 (1549)
T KOG0392|consen 1448 YRLI 1451 (1549)
T ss_pred eeeh
Confidence 4433
No 136
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.77 E-value=9.9e-18 Score=161.64 Aligned_cols=279 Identities=16% Similarity=0.103 Sum_probs=185.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcC
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 237 (485)
+.++-+|||.||||.- +++++.+.. ..++.-|.|.||..+++.+.+. |+.+..++|.......-. ..
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~ 258 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GN 258 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CC
Confidence 3467789999999988 788887765 4599999999998887777765 455666676554332211 23
Q ss_pred CCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhC-CCCCcEEEEecccchHHHHHHHHhcC
Q 011446 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDKYLQ 316 (485)
Q Consensus 238 ~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SATl~~~~~~~~~~~~~ 316 (485)
.+..+-||-++.. .-..+++.||||++.|.+...+-.+.+.+.-+ .....+.+ .+.+..++++.+.
T Consensus 259 ~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV~~i~k 325 (700)
T KOG0953|consen 259 PAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLVRKILK 325 (700)
T ss_pred cccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHHHHHHh
Confidence 4678888888541 13468999999999988766555555443322 22222111 1234444444432
Q ss_pred C---CeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCe-EEEEcCCCC
Q 011446 317 K---PYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYS-CFYIHAKML 392 (485)
Q Consensus 317 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~~h~~~~ 392 (485)
. ...+. .|.....-...+.+..-+....+|.+ |.|-+++.+-.+...+.+.+.. +.++||+++
T Consensus 326 ~TGd~vev~------------~YeRl~pL~v~~~~~~sl~nlk~GDC-vV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLP 392 (700)
T KOG0953|consen 326 MTGDDVEVR------------EYERLSPLVVEETALGSLSNLKPGDC-VVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLP 392 (700)
T ss_pred hcCCeeEEE------------eecccCcceehhhhhhhhccCCCCCe-EEEeehhhHHHHHHHHHHhcCcceEEEecCCC
Confidence 2 11111 11111111111223334455566776 4577888999999999988765 999999999
Q ss_pred HHHHHHHHHHHhc--CCccEEEEccccccCCCCCCCCEEEEcCCC---------CChHHHHHHhhhccccCccccc----
Q 011446 393 QDHRNRVFHDFRN--GACRNLVCTDLFTRGIDIQAVNVVINFDFP---------KNSETYLHRVCWIQLSFSLSLP---- 457 (485)
Q Consensus 393 ~~~r~~i~~~f~~--g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p---------~s~~~~~Qr~GRagR~g~~~~~---- 457 (485)
++.|..--..|.+ ++++||||||+.++|+|+ +++.||+++.- .+..+..|-+|||||.|.....
T Consensus 393 PeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vT 471 (700)
T KOG0953|consen 393 PETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVT 471 (700)
T ss_pred CchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEE
Confidence 9999999999987 899999999999999999 79999988864 4678899999999998654433
Q ss_pred --chHHHHHHHHHhhcccccc
Q 011446 458 --NLQFMCSMLMYICFTDRLV 476 (485)
Q Consensus 458 --~~~~~~~~~~~~~~~~~~~ 476 (485)
+.+.+....+-+..+.+.+
T Consensus 472 tl~~eDL~~L~~~l~~p~epi 492 (700)
T KOG0953|consen 472 TLHSEDLKLLKRILKRPVEPI 492 (700)
T ss_pred EeeHhhHHHHHHHHhCCchHH
Confidence 3444444444444444433
No 137
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.77 E-value=3e-18 Score=172.81 Aligned_cols=298 Identities=17% Similarity=0.214 Sum_probs=199.8
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCc--eEEEEEcCcHHHHHHHHH-HHHHHhccCCceEEEE
Q 011446 146 IQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNV--IQVVILVPTRELALQTSQ-VCKELGKHLNIQVMVT 222 (485)
Q Consensus 146 ~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~--~~~lil~P~~~la~q~~~-~~~~~~~~~~~~v~~~ 222 (485)
+-.+.+.++..+..++|.++||+|||+.+...+|+.+.+...+ ..+++..|++..++.+++ ++++.++..+-.|
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tv--- 458 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETC--- 458 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccc---
Confidence 4456666777778899999999999999999999998876544 355666799999888865 5566655544333
Q ss_pred ECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc-cccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 223 TGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD-KLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
+++.+.+......-..|++||-+-+++.+... +..++++|+||.| +..+.+|...+..-+.....+..+++|||
T Consensus 459 --gy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 459 --GYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred --cccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhc
Confidence 23333333333445679999999999988764 5578999999999 44455666555555555556777778888
Q ss_pred ccchH--------------------HHHHHHHhcCCCeEEeecccccccc--ceEEE------------Eee--------
Q 011446 302 TFPVT--------------------VKDFKDKYLQKPYVINLMDELTLKG--ITQYY------------AFV-------- 339 (485)
Q Consensus 302 Tl~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------~~~-------- 339 (485)
|+..+ +..|....+..+............. ..+.. ..+
T Consensus 534 tIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 534 TIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred ccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 76532 1222222222111111111000000 00000 000
Q ss_pred -------h-hhhhHHHHHHHH----HhcCCCcEEEEecChhHHHHHHHHHHHc-------CCeEEEEcCCCCHHHHHHHH
Q 011446 340 -------E-ERQKVHCLNTLF----SKLQINQSIIFCNSVNRVELLAKKITEL-------GYSCFYIHAKMLQDHRNRVF 400 (485)
Q Consensus 340 -------~-~~~~~~~l~~l~----~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~i~ 400 (485)
. ...-..++..++ .+.-.+.++||.+.+..+-.|+..|... .+.+++.|+.+...++.+++
T Consensus 614 ~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 614 RTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred hhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhcc
Confidence 0 001112222332 2334568999999999999999888653 46789999999999999999
Q ss_pred HHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCC------------------ChHHHHHHhhhcccc
Q 011446 401 HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK------------------NSETYLHRVCWIQLS 451 (485)
Q Consensus 401 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~------------------s~~~~~Qr~GRagR~ 451 (485)
+.-+.|..++|++|+++++.++|.++.+||+.+.-. |..+..||.||+||.
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv 762 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV 762 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee
Confidence 999999999999999999999999999998665422 456679999999995
No 138
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.76 E-value=2.2e-18 Score=130.32 Aligned_cols=78 Identities=29% Similarity=0.469 Sum_probs=75.4
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccC
Q 011446 375 KKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSF 452 (485)
Q Consensus 375 ~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g 452 (485)
+.|...++.+..+||+++..+|..+++.|.++...|||||+++++|+|+|++++||++++|+|...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999987
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.75 E-value=1.7e-17 Score=139.04 Aligned_cols=113 Identities=32% Similarity=0.501 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHhcC--CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccC
Q 011446 343 QKVHCLNTLFSKLQ--INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRG 420 (485)
Q Consensus 343 ~~~~~l~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~G 420 (485)
.+...+..++.... .+++||||++.+.++.+++.|.+.+..+.++|++++..+|..+++.|.++..++|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 56666777777654 6799999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCCChHHHHHHhhhccccCccc
Q 011446 421 IDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLS 455 (485)
Q Consensus 421 idi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~ 455 (485)
+|+|++++||+++.|++...+.|++||++|.|+.+
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~ 126 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKG 126 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCc
Confidence 99999999999999999999999999999999743
No 140
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.75 E-value=6.4e-17 Score=137.19 Aligned_cols=144 Identities=40% Similarity=0.510 Sum_probs=112.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcC
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 237 (485)
+++++.++||+|||++++.++....... ...+++|++|++.++.++.+.+...... +..+....+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 3589999999999999888887776652 3348999999999999998888877665 6777777777766655555567
Q ss_pred CCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEeccc
Q 011446 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (485)
Q Consensus 238 ~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl 303 (485)
..+|+++|++.+.............+++||+||+|.+....+...............+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 899999999999887776555566789999999999877665544333444556778899999995
No 141
>COG4889 Predicted helicase [General function prediction only]
Probab=99.74 E-value=7e-18 Score=169.77 Aligned_cols=324 Identities=18% Similarity=0.220 Sum_probs=188.3
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC----CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcC
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG----SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (485)
+|+.+.. .++..++.-+.-.+|+|+|+.|+++..++ ..-=+.+.+|+|||...+- +.+.+.. .++|+++|
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~LvP 214 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLVP 214 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeecc
Confidence 3444333 33444444444558999999999999876 2244556789999998543 3344433 48999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCCChH-------------------HHH------HHhcCCCeEEEEcchHHHH
Q 011446 197 TRELALQTSQVCKELGKHLNIQVMVTTGGTSLK-------------------DDI------MRLYQPVHLLVGTPGRILD 251 (485)
Q Consensus 197 ~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~-------------------~~~------~~~~~~~~Ili~Tp~~l~~ 251 (485)
+.+|..|..+.+..- +...+....++.+.... +.+ ..-..+.-|+++|+..+..
T Consensus 215 SIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~ 293 (1518)
T COG4889 215 SISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPR 293 (1518)
T ss_pred hHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHH
Confidence 999987776655432 22333333333332211 000 1112356799999999887
Q ss_pred hhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCC-----CCCcEEEEecccch---HHHHHHH-----------
Q 011446 252 LSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP-----ANRQILMFSATFPV---TVKDFKD----------- 312 (485)
Q Consensus 252 ~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SATl~~---~~~~~~~----------- 312 (485)
.-.-...-+..+++||+|||||.........-..-+..+- +..+.+.||||+.. ..+.-+.
T Consensus 294 i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDD 373 (1518)
T COG4889 294 IKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDD 373 (1518)
T ss_pred HHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccch
Confidence 6655556688999999999998643211100000010010 11235789999621 1111000
Q ss_pred -------------------HhcCCCeEEeec--cccccccceEEEEeehhhhhHH-------HHHHHHHhcC--------
Q 011446 313 -------------------KYLQKPYVINLM--DELTLKGITQYYAFVEERQKVH-------CLNTLFSKLQ-------- 356 (485)
Q Consensus 313 -------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~l~~l~~~~~-------- 356 (485)
.++.+..++.+. .......+.....-+......+ +-..+.++..
T Consensus 374 e~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~ 453 (1518)
T COG4889 374 ELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNI 453 (1518)
T ss_pred hhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCC
Confidence 011111111110 0000000000000000011111 1122222211
Q ss_pred ------CCcEEEEecChhHHHHHHHHHHH---------------cCCeEEEEcCCCCHHHHHHHHH---HHhcCCccEEE
Q 011446 357 ------INQSIIFCNSVNRVELLAKKITE---------------LGYSCFYIHAKMLQDHRNRVFH---DFRNGACRNLV 412 (485)
Q Consensus 357 ------~~~~lVf~~~~~~~~~l~~~L~~---------------~~~~~~~~h~~~~~~~r~~i~~---~f~~g~~~vlv 412 (485)
..+.|-||.+++....+++.+.. +.+.+..+.|.|...+|..... .|.+.+++||-
T Consensus 454 ~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlS 533 (1518)
T COG4889 454 KADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILS 533 (1518)
T ss_pred cCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeec
Confidence 12578999999887777766543 2345667788999999866554 35678899998
Q ss_pred EccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcccc
Q 011446 413 CTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 413 aT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~ 451 (485)
-...+++|+|+|.++.||++++-.|.-+.+|.+||++|-
T Consensus 534 NaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 534 NARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred cchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 888999999999999999999999999999999999993
No 142
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.73 E-value=1.9e-16 Score=165.06 Aligned_cols=299 Identities=18% Similarity=0.215 Sum_probs=204.7
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHH-HHHHHhccCCceE
Q 011446 142 RPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ-VCKELGKHLNIQV 219 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~-~~~~~~~~~~~~v 219 (485)
..+|+|.++++.+.+.++ +++.+|+|||||.|+.++++. .....+++++.|.-+.+.-++. +-+++....|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 458999999999887655 999999999999998887776 2344599999999999887766 4556666678888
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHH------HHHHHHhCCCC
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPS------VEQLIRFLPAN 293 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~------~~~i~~~~~~~ 293 (485)
+.+.|..... ..+....+|+|+||+++..+ + ....+++.|.||+|.+.+ ..++. +..+...+.++
T Consensus 1219 ~~l~ge~s~~---lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1219 VKLTGETSLD---LKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKK 1289 (1674)
T ss_pred EecCCccccc---hHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhh
Confidence 8888887766 33445679999999998765 2 467889999999998763 22221 45556666788
Q ss_pred CcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhh--------HHHHHHHHHh-cCCCcEEEEe
Q 011446 294 RQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQK--------VHCLNTLFSK-LQINQSIIFC 364 (485)
Q Consensus 294 ~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~l~~~-~~~~~~lVf~ 364 (485)
.+++.+|..+. ...++ .......+++.........+.-....+....- ......+.+. ...++.+||+
T Consensus 1290 ir~v~ls~~la-na~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~ 1366 (1674)
T KOG0951|consen 1290 IRVVALSSSLA-NARDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFL 1366 (1674)
T ss_pred eeEEEeehhhc-cchhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEe
Confidence 89999999875 34444 22233333443332222222222222211110 1112222222 2456899999
Q ss_pred cChhHHHHHHHHHHHc----------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCC
Q 011446 365 NSVNRVELLAKKITEL----------------------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID 422 (485)
Q Consensus 365 ~~~~~~~~l~~~L~~~----------------------~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gid 422 (485)
++++.|..++..|... ......-|-+++..+...+-.-|..|.+.|+|...- -.|+-
T Consensus 1367 p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~ 1445 (1674)
T KOG0951|consen 1367 PTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTK 1445 (1674)
T ss_pred ccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccc
Confidence 9999998887665431 122333388999999999999999999999887765 66666
Q ss_pred CCCCCEEEEcC-----------CCCChHHHHHHhhhccccCcccccc
Q 011446 423 IQAVNVVINFD-----------FPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 423 i~~v~~VI~~~-----------~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
... +.||-.| .+-+++...|++|+|.|+|+.+..-
T Consensus 1446 ~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~k~vi~~ 1491 (1674)
T KOG0951|consen 1446 LKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAGKCVIMC 1491 (1674)
T ss_pred ccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCCccEEEEe
Confidence 543 3344222 3456889999999999999887765
No 143
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.72 E-value=5.7e-15 Score=151.45 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=60.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhc----CCccEEEEccccccCCCC--------
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN----GACRNLVCTDLFTRGIDI-------- 423 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~----g~~~vlvaT~~~~~Gidi-------- 423 (485)
..|.+||.+.|...++.+++.|...--..+.+.|..+ .+..++++|+. |...||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4579999999999999999999653223344566532 35667888887 478999999999999999
Q ss_pred C--CCCEEEEcCCC
Q 011446 424 Q--AVNVVINFDFP 435 (485)
Q Consensus 424 ~--~v~~VI~~~~p 435 (485)
| .+..||...+|
T Consensus 547 ~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 547 KDNLLTDLIITCAP 560 (636)
T ss_pred CCCcccEEEEEeCC
Confidence 2 37889877776
No 144
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.69 E-value=3.3e-15 Score=156.74 Aligned_cols=319 Identities=19% Similarity=0.170 Sum_probs=185.3
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhc----C--CC--EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHH
Q 011446 132 LMGIFEKGFERPSPIQEESIPIALT----G--SD--ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQ 203 (485)
Q Consensus 132 ~~~l~~~~~~~~~~~Q~~~i~~i~~----~--~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (485)
.+.+.+..-..-+.+|..|+..+.. . +. +|-.|.||||||++ -.-++..+.....++|..|..-.|.|..|
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~~g~RfsiALGLRTLTLQ 476 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDKQGARFAIALGLRSLTLQ 476 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCCCCceEEEEccccceecc
Confidence 3334333333457899999998775 1 12 56689999999997 44455556666667788888888888777
Q ss_pred HHHHHHHHhccCCceEEEEECCCChHHHH-------------------------------------------HHhc----
Q 011446 204 TSQVCKELGKHLNIQVMVTTGGTSLKDDI-------------------------------------------MRLY---- 236 (485)
Q Consensus 204 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-------------------------------------------~~~~---- 236 (485)
.-+.+++...--.-...+++|+....+-. ..+.
T Consensus 477 TGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k 556 (1110)
T TIGR02562 477 TGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDK 556 (1110)
T ss_pred chHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChh
Confidence 76666665433333344444443221100 0000
Q ss_pred ----CCCeEEEEcchHHHHhhh--cCcc-ccC----CcceEEeeccccccCCCCHHHHHHHHHhC-CCCCcEEEEecccc
Q 011446 237 ----QPVHLLVGTPGRILDLSK--KGVC-ILK----DCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSATFP 304 (485)
Q Consensus 237 ----~~~~Ili~Tp~~l~~~~~--~~~~-~l~----~~~~iViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SATl~ 304 (485)
-...++|||++.++.... +... .+. .-+.|||||+|.+-. .....+..++... ..+.++++||||+|
T Consensus 557 ~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~-~~~~~L~rlL~w~~~lG~~VlLmSATLP 635 (1110)
T TIGR02562 557 EKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEP-EDLPALLRLVQLAGLLGSRVLLSSATLP 635 (1110)
T ss_pred hhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCH-HHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 035699999999987652 2111 111 126899999997522 2233344443321 24678999999999
Q ss_pred hHHHHHHHH-h----------cCCC---eEEee--cccccc----------------------------ccceE--EEEe
Q 011446 305 VTVKDFKDK-Y----------LQKP---YVINL--MDELTL----------------------------KGITQ--YYAF 338 (485)
Q Consensus 305 ~~~~~~~~~-~----------~~~~---~~~~~--~~~~~~----------------------------~~~~~--~~~~ 338 (485)
+.+...+.. | ...| ..+.. ..++.. ..... ....
T Consensus 636 ~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~ 715 (1110)
T TIGR02562 636 PALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLS 715 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEee
Confidence 876553322 2 1211 11100 000000 00000 0101
Q ss_pred ehhh-----hhH--------HHHHHHHHhc----C-CC-c---EEEEecChhHHHHHHHHHHHc------CCeEEEEcCC
Q 011446 339 VEER-----QKV--------HCLNTLFSKL----Q-IN-Q---SIIFCNSVNRVELLAKKITEL------GYSCFYIHAK 390 (485)
Q Consensus 339 ~~~~-----~~~--------~~l~~l~~~~----~-~~-~---~lVf~~~~~~~~~l~~~L~~~------~~~~~~~h~~ 390 (485)
++.. ... ..+..+.+.+ + .+ + .||-+.+++.+-.++..|... .+.+.+||+.
T Consensus 716 ~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr 795 (1110)
T TIGR02562 716 LSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQ 795 (1110)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEeccc
Confidence 1110 011 1111122211 1 12 2 488899999999998888764 3457889999
Q ss_pred CCHHHHHHHHHHH----------------------hc----CCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHH
Q 011446 391 MLQDHRNRVFHDF----------------------RN----GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHR 444 (485)
Q Consensus 391 ~~~~~r~~i~~~f----------------------~~----g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr 444 (485)
.+...|..+.+.. .+ +...|+|+|.+.+.|+|+ |.+++|- -|.++.+.+||
T Consensus 796 ~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~ 872 (1110)
T TIGR02562 796 DPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQL 872 (1110)
T ss_pred ChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHH
Confidence 9877777665442 11 466899999999999998 4555553 46778999999
Q ss_pred hhhccccCccc
Q 011446 445 VCWIQLSFSLS 455 (485)
Q Consensus 445 ~GRagR~g~~~ 455 (485)
+||+.|-|...
T Consensus 873 aGR~~R~~~~~ 883 (1110)
T TIGR02562 873 AGRVNRHRLEK 883 (1110)
T ss_pred hhcccccccCC
Confidence 99999976544
No 145
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.69 E-value=1.3e-14 Score=158.24 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=62.7
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCC--eEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCC--CEEEE
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGY--SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV--NVVIN 431 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v--~~VI~ 431 (485)
..+++|||++|.+..+.+++.|..... ....+--+++...|.++++.|+.++..||++|..+.+|||+|+- ..||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999976422 12222223333467889999999988999999999999999974 67887
Q ss_pred cCCC
Q 011446 432 FDFP 435 (485)
Q Consensus 432 ~~~p 435 (485)
..+|
T Consensus 831 ~kLP 834 (928)
T PRK08074 831 VRLP 834 (928)
T ss_pred ecCC
Confidence 7765
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=4.2e-15 Score=153.76 Aligned_cols=273 Identities=18% Similarity=0.176 Sum_probs=176.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.++++|.-.--.+ .+.-|+.+.||-|||+++.+|++-....+. .|-|++++.-||..-++++..+...+|+.|++
T Consensus 85 r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~Gk---gVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 85 RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALTGK---GVHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhcCC---CeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 4667776554444 455789999999999999999887655433 67889999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHH-----HHhhhc--CccccCCcceEEeecccccc-CC---------------C
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRI-----LDLSKK--GVCILKDCSMLVMDEADKLL-SP---------------E 278 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-----~~~~~~--~~~~l~~~~~iViDEah~~~-~~---------------~ 278 (485)
..++.+..+. .....++|+|+|...| .+.+.. .......+.++||||||.++ +. .
T Consensus 160 i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~ 237 (939)
T PRK12902 160 IQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQE 237 (939)
T ss_pred ECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCccchH
Confidence 8876655433 3346899999999877 333221 22345678999999999775 10 0
Q ss_pred CHHHHHHHHHhCCC--------------C---------------------------------------------------
Q 011446 279 FQPSVEQLIRFLPA--------------N--------------------------------------------------- 293 (485)
Q Consensus 279 ~~~~~~~i~~~~~~--------------~--------------------------------------------------- 293 (485)
.......+...+.. .
T Consensus 238 ~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYi 317 (939)
T PRK12902 238 KYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYI 317 (939)
T ss_pred HHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEE
Confidence 00011111111100 0
Q ss_pred ---------------------------------------------------------CcEEEEecccchHHHHHHHHhcC
Q 011446 294 ---------------------------------------------------------RQILMFSATFPVTVKDFKDKYLQ 316 (485)
Q Consensus 294 ---------------------------------------------------------~~~i~~SATl~~~~~~~~~~~~~ 316 (485)
.++-+||+|......+|..-|.-
T Consensus 318 V~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l 397 (939)
T PRK12902 318 VRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKL 397 (939)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCC
Confidence 14556777765555555444433
Q ss_pred CCeEEeeccccccccceEEEEeehhhhhHHHH-HHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCC-CCH
Q 011446 317 KPYVINLMDELTLKGITQYYAFVEERQKVHCL-NTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAK-MLQ 393 (485)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~-~~~ 393 (485)
+-..+.........+....+ +.....|...+ ..+...+ ...|+||-|.|++..+.++..|.+.|+..-.+++. ...
T Consensus 398 ~Vv~IPTnkP~~R~d~~d~v-y~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~ 476 (939)
T PRK12902 398 EVTVIPTNRPRRRQDWPDQV-YKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENV 476 (939)
T ss_pred cEEEcCCCCCeeeecCCCeE-EcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcch
Confidence 32222221122122222222 22334444444 4444444 45599999999999999999999999999999987 333
Q ss_pred HHHHHHHHHHhcCC-ccEEEEccccccCCCCC
Q 011446 394 DHRNRVFHDFRNGA-CRNLVCTDLFTRGIDIQ 424 (485)
Q Consensus 394 ~~r~~i~~~f~~g~-~~vlvaT~~~~~Gidi~ 424 (485)
+.-..|+.. .|. -.|-||||+|+||.||.
T Consensus 477 ~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 477 EREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred HhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 333445443 454 35999999999999986
No 147
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=2.1e-15 Score=134.29 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHhc-------CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhcc
Q 011446 142 RPSPIQEESIPIALT-------GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKH 214 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~-------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~ 214 (485)
+|+++|.+++..+.. .+.+++.+|||||||.+++..+..... +++++||+..|+.|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 578999999998884 578999999999999997755554443 8999999999999999888666543
Q ss_pred CCceEEE-----------EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC-----------ccccCCcceEEeeccc
Q 011446 215 LNIQVMV-----------TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-----------VCILKDCSMLVMDEAD 272 (485)
Q Consensus 215 ~~~~v~~-----------~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~-----------~~~l~~~~~iViDEah 272 (485)
....... ..................+++++|...|....... ......+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2111110 11111111222333457789999999998765431 1224467899999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCcEEEEecccc
Q 011446 273 KLLSPEFQPSVEQLIRFLPANRQILMFSATFP 304 (485)
Q Consensus 273 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~ 304 (485)
++.... .+..++. .....+|+||||+.
T Consensus 157 ~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 864322 1455555 45677899999974
No 148
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.65 E-value=1.3e-15 Score=156.05 Aligned_cols=303 Identities=16% Similarity=0.174 Sum_probs=196.5
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCC-
Q 011446 142 RPSPIQEESIPIALT----GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN- 216 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~- 216 (485)
.+.+||...+.++.+ +-+-|+..+||-|||.+.+..+...+...+..+.-+|+||+..|. .|-.++..+..
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~----NW~~Ef~kWaPS 469 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLV----NWSSEFPKWAPS 469 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccC----Cchhhccccccc
Confidence 689999999998774 245899999999999985444333333333334679999999985 34344433333
Q ss_pred ceEEEEECCCChHHH--HHHhcCCCeEEEEcchHHHHhhhcCccccC--CcceEEeeccccccCCCCHHHHHHHHHhCCC
Q 011446 217 IQVMVTTGGTSLKDD--IMRLYQPVHLLVGTPGRILDLSKKGVCILK--DCSMLVMDEADKLLSPEFQPSVEQLIRFLPA 292 (485)
Q Consensus 217 ~~v~~~~g~~~~~~~--~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~--~~~~iViDEah~~~~~~~~~~~~~i~~~~~~ 292 (485)
+..+...|....+.. ........+|+++|++.+.. +...|+ ++.++||||-|+|.+..-. +...+.....
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa~~K--Lt~~L~t~y~ 543 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNAICK--LTDTLNTHYR 543 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccchhhH--HHHHhhcccc
Confidence 333444443332221 12223678999999998865 222233 4578999999998753311 2222221111
Q ss_pred CCcEEEEeccc---------------------------------------------------------------------
Q 011446 293 NRQILMFSATF--------------------------------------------------------------------- 303 (485)
Q Consensus 293 ~~~~i~~SATl--------------------------------------------------------------------- 303 (485)
...-+++|+|+
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 12224445552
Q ss_pred ------chHHH------------------------------------------HHHHHhcCCCeEEeeccccccccceEE
Q 011446 304 ------PVTVK------------------------------------------DFKDKYLQKPYVINLMDELTLKGITQY 335 (485)
Q Consensus 304 ------~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (485)
|..++ -..++.++.|+.+.-.+. ....+
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~----~~~~~ 699 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN----SYTLH 699 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc----ccccc
Confidence 10000 011112222222110000 00000
Q ss_pred ---EEeehhhhhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCC---
Q 011446 336 ---YAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA--- 407 (485)
Q Consensus 336 ---~~~~~~~~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~--- 407 (485)
...+....|..++..++.++ ..+++|.||........+.++|.-.++....+.|....++|...++.|..-.
T Consensus 700 ~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~y 779 (1157)
T KOG0386|consen 700 YDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPY 779 (1157)
T ss_pred cChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCce
Confidence 01123345677777777665 3459999999999999999999988999999999999999999999997543
Q ss_pred ccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 408 CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 408 ~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+..|++|.+.+.|+|+..++.||.||.-+++....|+.-||.|.|+.-...
T Consensus 780 f~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evR 830 (1157)
T KOG0386|consen 780 FIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVR 830 (1157)
T ss_pred eeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhhee
Confidence 456889999999999999999999999999999999999999988765543
No 149
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.2e-15 Score=116.49 Aligned_cols=81 Identities=31% Similarity=0.550 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcccc
Q 011446 372 LLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 372 ~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~ 451 (485)
.+++.|...++.+..+||++++.+|..+++.|..+...|||+|+++++|+|++++++||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 011446 452 F 452 (485)
Q Consensus 452 g 452 (485)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=5.3e-14 Score=147.14 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=86.9
Q ss_pred hhhHHHH-HHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCC-ccEEEEccccc
Q 011446 342 RQKVHCL-NTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA-CRNLVCTDLFT 418 (485)
Q Consensus 342 ~~~~~~l-~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~-~~vlvaT~~~~ 418 (485)
..|...+ ..+...+ ...|+||-|.|++..+.|+..|...++..-.+++.....+- .|+.. .|. -.|-|||++|+
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EA-eIVA~--AG~~GaVTIATNMAG 687 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEA-EIVAE--AGQPGTVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHH-HHHHh--cCCCCcEEEeccCcC
Confidence 3444443 3444433 44599999999999999999999999998888887543333 33332 343 35899999999
Q ss_pred cCCCCC--------CCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 419 RGIDIQ--------AVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 419 ~Gidi~--------~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
||.||. +=-|||-...+.|..--.|-.|||||-|.-|..
T Consensus 688 RGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS 734 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSS 734 (1112)
T ss_pred CCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcc
Confidence 999998 335899999999999999999999999887765
No 151
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.60 E-value=2.4e-14 Score=148.11 Aligned_cols=122 Identities=15% Similarity=0.171 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCC--ccEEEEccccc
Q 011446 343 QKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA--CRNLVCTDLFT 418 (485)
Q Consensus 343 ~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~--~~vlvaT~~~~ 418 (485)
.|+..|.-|++.+ ...++|||+...+..+.|...|.-+|+-.+.+.|...-++|..++++|..+. +..|++|-..+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 3556666666654 4459999999999999999999999999999999999999999999998775 45688999999
Q ss_pred cCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccchHHHHH
Q 011446 419 RGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPNLQFMCS 464 (485)
Q Consensus 419 ~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~~~~~~~ 464 (485)
.|||+.+++.||+||-.|+..--.|..-||.|.|+-...+++++++
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLIS 1385 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS 1385 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeec
Confidence 9999999999999999999888888888888888877777666655
No 152
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.57 E-value=2e-13 Score=130.25 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=88.7
Q ss_pred CcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCC-ccE-EEEccccccCCCCCCCCEEEEcCCC
Q 011446 358 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGA-CRN-LVCTDLFTRGIDIQAVNVVINFDFP 435 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~-~~v-lvaT~~~~~Gidi~~v~~VI~~~~p 435 (485)
-+.|||..-....+.+.-.|.+.|+.++-+.|+|++..|+..++.|.++- +.| |++-.+.+.-+++..+.+|+..|+-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 37899998888888888899999999999999999999999999999763 444 6677788889999999999999999
Q ss_pred CChHHHHHHhhhccccCcccccc
Q 011446 436 KNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 436 ~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
++++--.|..-|..|.|+...-.
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvk 741 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVK 741 (791)
T ss_pred ccHHHHhhhhhhHHhhcCcccee
Confidence 99999999999999988876554
No 153
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.55 E-value=1.1e-13 Score=137.10 Aligned_cols=117 Identities=17% Similarity=0.212 Sum_probs=102.7
Q ss_pred hhhHHHHHHHHHhcC--CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCc-cEEEEccccc
Q 011446 342 RQKVHCLNTLFSKLQ--INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC-RNLVCTDLFT 418 (485)
Q Consensus 342 ~~~~~~l~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~-~vlvaT~~~~ 418 (485)
..|+..|..++.+.. ..++|+|+...+.+..+.++|.-.++..+.+.|.....+|..++..|....+ -.|++|.+.+
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 445666777776653 3499999999999999999999999999999999999999999999987554 4588999999
Q ss_pred cCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 419 RGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 419 ~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
-||++..++.||+||..+++..-.|..-||.|-|+-....
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvt 1146 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVT 1146 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCcccee
Confidence 9999999999999999999999999999999998876643
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.55 E-value=3.6e-13 Score=138.27 Aligned_cols=275 Identities=14% Similarity=0.223 Sum_probs=178.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcC
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 237 (485)
...+|.+|+|||||++..-++-..+. ....++|+++-+++|+.++...++...-. +.. ......... .-..
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv--~Y~d~~~~~----i~~~ 120 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV--NYLDSDDYI----IDGR 120 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce--eeecccccc----cccc
Confidence 34789999999999985444333332 23348999999999998887777654211 111 111111100 0012
Q ss_pred CCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHH-------HHHHhCCCCCcEEEEecccchHHHHH
Q 011446 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVE-------QLIRFLPANRQILMFSATFPVTVKDF 310 (485)
Q Consensus 238 ~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~-------~i~~~~~~~~~~i~~SATl~~~~~~~ 310 (485)
..+-+++..+.|.++.. ..+.++++|||||+-.+++.-|.+.++ .+...+.....+|++-||+.....+|
T Consensus 121 ~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdF 197 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDF 197 (824)
T ss_pred ccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHH
Confidence 34667777777766542 246789999999998766543333322 23344556678999999999999999
Q ss_pred HHHhcCCCeEEeeccccccccceEEEEeehh-------------------------------------hhhHHHHHHHHH
Q 011446 311 KDKYLQKPYVINLMDELTLKGITQYYAFVEE-------------------------------------RQKVHCLNTLFS 353 (485)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~l~~l~~ 353 (485)
+..+.....+..+..++...+.......+-. .....+...++.
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~ 277 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA 277 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH
Confidence 9998777766665554433332222221100 112234445555
Q ss_pred hcCC-CcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCE--EE
Q 011446 354 KLQI-NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV--VI 430 (485)
Q Consensus 354 ~~~~-~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~--VI 430 (485)
.... ..+-||+.|...++.+++........+..++|.-+..+ + +.| ++++|+|-|.+...|+++....+ |.
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f 351 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEEKHFDSMF 351 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccchhhceEEE
Confidence 5544 47889999999999999999888889999988766653 2 223 67899999999999999986543 33
Q ss_pred EcCCC----CChHHHHHHhhhccc
Q 011446 431 NFDFP----KNSETYLHRVCWIQL 450 (485)
Q Consensus 431 ~~~~p----~s~~~~~Qr~GRagR 450 (485)
-|=-| .+..+..|.+||+-.
T Consensus 352 ~yvk~~~~gpd~~s~~Q~lgRvR~ 375 (824)
T PF02399_consen 352 AYVKPMSYGPDMVSVYQMLGRVRS 375 (824)
T ss_pred EEecCCCCCCcHHHHHHHHHHHHh
Confidence 22112 345678999999866
No 155
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.54 E-value=4e-12 Score=134.71 Aligned_cols=76 Identities=17% Similarity=0.324 Sum_probs=59.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc-CCeEEEEcCCCCHHHHHHHHHHHh----cCCccEEEEccccccCCCCCC--CCE
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFR----NGACRNLVCTDLFTRGIDIQA--VNV 428 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~i~~~f~----~g~~~vlvaT~~~~~Gidi~~--v~~ 428 (485)
..+.+|||++|.+..+.+++.|... +.. +..++.. .+..+++.|+ .++..||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3456999999999999999998743 333 3445542 4667787776 467789999999999999997 678
Q ss_pred EEEcCCC
Q 011446 429 VINFDFP 435 (485)
Q Consensus 429 VI~~~~p 435 (485)
||...+|
T Consensus 609 vII~kLP 615 (697)
T PRK11747 609 VIITKIP 615 (697)
T ss_pred EEEEcCC
Confidence 9988876
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.53 E-value=2.2e-12 Score=137.48 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=74.9
Q ss_pred HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCe-EEEEcCCCCHHHHHHHHHHHhcCCc-cEEEEccccccCCCCCC
Q 011446 348 LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYS-CFYIHAKMLQDHRNRVFHDFRNGAC-RNLVCTDLFTRGIDIQA 425 (485)
Q Consensus 348 l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~~h~~~~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gidi~~ 425 (485)
+..++.. .++.+|||++|.+.++.+++.+...... ....++..+ +..+++.|..+.- .++|+|..+.+|||+++
T Consensus 471 i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 3333433 3458999999999999999999876542 445555544 3477888877655 89999999999999997
Q ss_pred C--CEEEEcCCCC------------------------------ChHHHHHHhhhcccc
Q 011446 426 V--NVVINFDFPK------------------------------NSETYLHRVCWIQLS 451 (485)
Q Consensus 426 v--~~VI~~~~p~------------------------------s~~~~~Qr~GRagR~ 451 (485)
- ..||..++|- -.....|.+||+-|.
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~ 604 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRS 604 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhcccccc
Confidence 5 6788777763 234558999999993
No 157
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=8.7e-12 Score=133.14 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=60.7
Q ss_pred CCCCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 140 FERPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|++.+....+...+++|.+.|..-..|+.+.+++.
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 6667999998877655 56889999999999999999999998776555568999999998888888888874
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.50 E-value=6.1e-12 Score=131.01 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=93.7
Q ss_pred EccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHH----HHhcCC
Q 011446 163 RAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI----MRLYQP 238 (485)
Q Consensus 163 ~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~----~~~~~~ 238 (485)
.+.+|||||..|+-.+-..+..+ ..+||++|...|+.|+.+.+++.+. +..+..++++.+..+.. ......
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~ 240 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQ 240 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCC
Confidence 33469999999887776666543 3799999999999999998887763 24577788877655433 233456
Q ss_pred CeEEEEcchHHHHhhhcCccccCCcceEEeecccccc--CC-CCHHHHH--HHHHhCCCCCcEEEEecccchHHH
Q 011446 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL--SP-EFQPSVE--QLIRFLPANRQILMFSATFPVTVK 308 (485)
Q Consensus 239 ~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~--~~-~~~~~~~--~i~~~~~~~~~~i~~SATl~~~~~ 308 (485)
.+|+|+|-..+ ...+.++++|||||-|.-+ +. ..+.... .++.....+..+|+.|||++.+..
T Consensus 241 ~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 241 ARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred CcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 89999999876 4457899999999999432 21 1121122 223444568899999999874443
No 159
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.43 E-value=3.5e-12 Score=126.82 Aligned_cols=101 Identities=17% Similarity=0.137 Sum_probs=83.5
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhc--C-CccEEEEccccccCCCCCCCCEEEEcC
Q 011446 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN--G-ACRNLVCTDLFTRGIDIQAVNVVINFD 433 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~--g-~~~vlvaT~~~~~Gidi~~v~~VI~~~ 433 (485)
..+++|...=......+...|.+.|.....+||.....+|..+++.|.. | ..-.|++-.+.+.|+|+-+.+|+|.+|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 3455555555555677788999999999999999999999999999963 4 344466677778999999999999999
Q ss_pred CCCChHHHHHHhhhccccCccccc
Q 011446 434 FPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
+-|+++--.|..-|..|+|+.-..
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V 849 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDV 849 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCce
Confidence 999999999999999999886554
No 160
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.42 E-value=6.1e-12 Score=139.25 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=99.8
Q ss_pred hhHHHHHHHH-H--hcCCC--cEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcC--CccEEEEcc
Q 011446 343 QKVHCLNTLF-S--KLQIN--QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG--ACRNLVCTD 415 (485)
Q Consensus 343 ~~~~~l~~l~-~--~~~~~--~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g--~~~vlvaT~ 415 (485)
.|...+..++ . ..... ++|||++.......+...|...++....++|.++...|..+++.|.++ ...++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4555555566 2 22333 899999999999999999999998899999999999999999999986 445677788
Q ss_pred ccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 416 LFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 416 ~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
+.+.|+|+...++||++|..++++...|...||.|.|+.....
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~ 814 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVK 814 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeE
Confidence 9999999999999999999999999999999999998877664
No 161
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.41 E-value=1.2e-11 Score=126.42 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=100.0
Q ss_pred HHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHH----------------------cCCeEEEEcCCCCHHHHHHHHH
Q 011446 346 HCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITE----------------------LGYSCFYIHAKMLQDHRNRVFH 401 (485)
Q Consensus 346 ~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~----------------------~~~~~~~~h~~~~~~~r~~i~~ 401 (485)
-+|..|++.. -..+.|||..+......+..+|.- .|.....+.|......|....+
T Consensus 1129 iLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~ 1208 (1567)
T KOG1015|consen 1129 ILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAE 1208 (1567)
T ss_pred ehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHH
Confidence 3455555432 345899999999888888777754 2566788999999999999999
Q ss_pred HHhcC----CccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccchHHHHH
Q 011446 402 DFRNG----ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPNLQFMCS 464 (485)
Q Consensus 402 ~f~~g----~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~~~~~~~ 464 (485)
.|.+- ..-.||+|.+.+-|||+-+++.||.||..|++.--.|.+=|+.|+|+.-..+.++|+|
T Consensus 1209 ~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1209 EFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred HhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 99753 2346999999999999999999999999999999999999999999999998888887
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.38 E-value=3.3e-11 Score=124.83 Aligned_cols=317 Identities=17% Similarity=0.159 Sum_probs=189.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEE
Q 011446 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVT 222 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~ 222 (485)
++|+=.+.+-.+.-...-+.-+-||-|||+++.+|+.-....+. .+.+++..--||.--.++...+...+|+.+++.
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gk---gVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~ 155 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGK---GVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVI 155 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCC---CcEEeeehHHhhhhCHHHHHHHHHHcCCceeec
Confidence 34444445555555666889999999999999999876655432 567777777888877889999999999999999
Q ss_pred ECCCChHHHHHHhcCCCeEEEEcchHHH-----H-hhh-cCccccCCcceEEeeccccccC----------------CCC
Q 011446 223 TGGTSLKDDIMRLYQPVHLLVGTPGRIL-----D-LSK-KGVCILKDCSMLVMDEADKLLS----------------PEF 279 (485)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~Ili~Tp~~l~-----~-~~~-~~~~~l~~~~~iViDEah~~~~----------------~~~ 279 (485)
..+.+..+.... ..++|.|+|-..|- + +.. ........+.+.|+||+|.++= ...
T Consensus 156 ~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~ 233 (822)
T COG0653 156 LAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSEL 233 (822)
T ss_pred cCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCchH
Confidence 888866554444 46899999987652 1 111 1122244678899999997641 011
Q ss_pred HHHHHHHHHhCCCC--------C---------------------------------------------------------
Q 011446 280 QPSVEQLIRFLPAN--------R--------------------------------------------------------- 294 (485)
Q Consensus 280 ~~~~~~i~~~~~~~--------~--------------------------------------------------------- 294 (485)
...+..+...+... .
T Consensus 234 Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev 313 (822)
T COG0653 234 YKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEV 313 (822)
T ss_pred HHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeE
Confidence 22222232222111 0
Q ss_pred ----------------------------------------------------cEEEEecccchHHHHHHHHhcCCCeEEe
Q 011446 295 ----------------------------------------------------QILMFSATFPVTVKDFKDKYLQKPYVIN 322 (485)
Q Consensus 295 ----------------------------------------------------~~i~~SATl~~~~~~~~~~~~~~~~~~~ 322 (485)
++.+||+|...+..+|..-|...-..+.
T Consensus 314 ~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iP 393 (822)
T COG0653 314 VIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIP 393 (822)
T ss_pred EEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeecc
Confidence 2233333333333333333332222222
Q ss_pred eccccccccceEEEEeehhhhhH-HHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHH
Q 011446 323 LMDELTLKGITQYYAFVEERQKV-HCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF 400 (485)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~ 400 (485)
........+..... +.....|. ..+..+...+ ..+|+||-+.+++..+.++..|.+.+++...+++.-...+=..+
T Consensus 394 Tnrp~~R~D~~D~v-y~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Ii- 471 (822)
T COG0653 394 TNRPIIRLDEPDLV-YKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEII- 471 (822)
T ss_pred CCCcccCCCCcccc-ccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHH-
Confidence 11111111111111 22233343 3444444444 45699999999999999999999999999888887553332222
Q ss_pred HHHhcCCc-cEEEEccccccCCCCCCCC-----------EEEEcCCCCChHHHHHHhhhccccCcccccchHHHHHHHHH
Q 011446 401 HDFRNGAC-RNLVCTDLFTRGIDIQAVN-----------VVINFDFPKNSETYLHRVCWIQLSFSLSLPNLQFMCSMLMY 468 (485)
Q Consensus 401 ~~f~~g~~-~vlvaT~~~~~Gidi~~v~-----------~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~~~~~~~~~~~ 468 (485)
.+ .|.. .|-|||++|++|-||.--. +||-..--.|..-=.|--||+||-|--|. ..++.+++..
T Consensus 472 -a~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~--S~F~lSleD~ 547 (822)
T COG0653 472 -AQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGS--SRFYLSLEDD 547 (822)
T ss_pred -hh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcch--hhhhhhhHHH
Confidence 22 3433 4889999999999987333 34443334444444688899999884333 4444444444
Q ss_pred hh
Q 011446 469 IC 470 (485)
Q Consensus 469 ~~ 470 (485)
+.
T Consensus 548 L~ 549 (822)
T COG0653 548 LM 549 (822)
T ss_pred HH
Confidence 43
No 163
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.36 E-value=2.3e-10 Score=112.13 Aligned_cols=213 Identities=18% Similarity=0.228 Sum_probs=154.7
Q ss_pred CCeEEEEcchHHHHhhhc------CccccCCcceEEeecccccc--CCCCHHHHHHHHHhCCCC----------------
Q 011446 238 PVHLLVGTPGRILDLSKK------GVCILKDCSMLVMDEADKLL--SPEFQPSVEQLIRFLPAN---------------- 293 (485)
Q Consensus 238 ~~~Ili~Tp~~l~~~~~~------~~~~l~~~~~iViDEah~~~--~~~~~~~~~~i~~~~~~~---------------- 293 (485)
.+|||||+|=-|...+.. +...|+++.++|+|.||-++ ++++...+...+...|.+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 689999999888776663 45669999999999999665 333444444444444421
Q ss_pred -----CcEEEEecccchHHHHHHHHhcCCCe-EEeeccc--------cccccceEEEEeehhh-------hhHH-----H
Q 011446 294 -----RQILMFSATFPVTVKDFKDKYLQKPY-VINLMDE--------LTLKGITQYYAFVEER-------QKVH-----C 347 (485)
Q Consensus 294 -----~~~i~~SATl~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~-------~~~~-----~ 347 (485)
+|+|++|+...+++..+....+.+.. .+.+... .....+.+.+...+.. .... .
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 59999999999999998888654432 1221111 1223455555544321 1221 2
Q ss_pred HHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccc--cCCCCCC
Q 011446 348 LNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT--RGIDIQA 425 (485)
Q Consensus 348 l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~--~Gidi~~ 425 (485)
+-.+......+.+|||+++.-+--.+...|++.++....+|--.+..+-.++-..|..|+.+||+.|.-+- +=..|.+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irG 370 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRG 370 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecC
Confidence 22222233456899999999999999999999999999999999999999999999999999999999754 6778999
Q ss_pred CCEEEEcCCCCChHHHHHHhhhccc
Q 011446 426 VNVVINFDFPKNSETYLHRVCWIQL 450 (485)
Q Consensus 426 v~~VI~~~~p~s~~~~~Qr~GRagR 450 (485)
+++||.|++|..+.-|...+.-.+.
T Consensus 371 i~~viFY~~P~~p~fY~El~n~~~~ 395 (442)
T PF06862_consen 371 IRHVIFYGPPENPQFYSELLNMLDE 395 (442)
T ss_pred CcEEEEECCCCChhHHHHHHhhhcc
Confidence 9999999999999888766644333
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.31 E-value=6e-12 Score=102.90 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=76.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 236 (485)
++-.++-..+|+|||.-.+--++..... .+.++|||.|||.++..+.+.++ ..+..+.. .... . ...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~rvLvL~PTRvva~em~~aL~----~~~~~~~t--~~~~-~----~~~ 70 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--RRLRVLVLAPTRVVAEEMYEALK----GLPVRFHT--NARM-R----THF 70 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--TT--EEEEESSHHHHHHHHHHTT----TSSEEEES--TTSS---------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--ccCeEEEecccHHHHHHHHHHHh----cCCcccCc--eeee-c----ccc
Confidence 3447889999999999744444433322 23499999999999866665554 22333221 1111 1 112
Q ss_pred CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC--CHHHHHHHHHhCCCCCcEEEEecccchHHH
Q 011446 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE--FQPSVEQLIRFLPANRQILMFSATFPVTVK 308 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~i~~SATl~~~~~ 308 (485)
.+.-|-++|...+.+.+.+ ...+.++++||+||||..-... +.-.+... .. .....+|+||||+|-...
T Consensus 71 g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSED 141 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT---
T ss_pred CCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCCC
Confidence 4556889999998887776 4557899999999999741111 11112111 22 234689999999986553
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.28 E-value=1.5e-11 Score=118.54 Aligned_cols=151 Identities=17% Similarity=0.121 Sum_probs=91.8
Q ss_pred HHHHHHHHHhc-------------CCCEEEEccCCCchhHHhHHHHHhhhhccCCc---eEEEEEcCcHHHHHHHHHHHH
Q 011446 146 IQEESIPIALT-------------GSDILARAKNGTGKTAAFCIPALEKIDQDNNV---IQVVILVPTRELALQTSQVCK 209 (485)
Q Consensus 146 ~Q~~~i~~i~~-------------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~---~~~lil~P~~~la~q~~~~~~ 209 (485)
+|.+++..++. .+.+|++.++|+|||.+.+..+. .+...... ..+||+||. .+..+|...+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 57777776643 24599999999999998665444 33322221 259999999 77788999999
Q ss_pred HHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHH-----HhhhcCccccCCcceEEeeccccccCCCCHHHHH
Q 011446 210 ELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL-----DLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVE 284 (485)
Q Consensus 210 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~-----~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (485)
++......++....|...............+++|+|++.+. .... ...--++++||+||+|.+-+.. ....
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~--~l~~~~~~~vIvDEaH~~k~~~--s~~~ 154 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKE--DLKQIKWDRVIVDEAHRLKNKD--SKRY 154 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTH--HHHTSEEEEEEETTGGGGTTTT--SHHH
T ss_pred cccccccccccccccccccccccccccccceeeecccccccccccccccc--ccccccceeEEEeccccccccc--cccc
Confidence 98865456776666655222222333456889999999998 2111 1111248899999999984322 2233
Q ss_pred HHHHhCCCCCcEEEEeccc
Q 011446 285 QLIRFLPANRQILMFSATF 303 (485)
Q Consensus 285 ~i~~~~~~~~~~i~~SATl 303 (485)
..+..+. ....+++|||+
T Consensus 155 ~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-
T ss_pred ccccccc-cceEEeecccc
Confidence 4444455 56678999996
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.20 E-value=1.8e-09 Score=117.67 Aligned_cols=283 Identities=15% Similarity=0.175 Sum_probs=157.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcC
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 237 (485)
+.-+|+.-||||||+.....+ ..+......+.+++|+-++.|-.|+.+.+..+........ ...+...-...+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 358999999999999844433 3344445667999999999999999999998876543322 23344444444443
Q ss_pred -CCeEEEEcchHHHHhhhcCc--cccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHH-HHH
Q 011446 238 -PVHLLVGTPGRILDLSKKGV--CILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDF-KDK 313 (485)
Q Consensus 238 -~~~Ili~Tp~~l~~~~~~~~--~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~-~~~ 313 (485)
...|+|||-.+|-....... ..-.+=-+||+|||||. + ++..-..+...+ ++...+++|+|+-..-... ...
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q--~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d~~tt~~ 424 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-Q--YGELAKLLKKAL-KKAIFIGFTGTPIFKEDKDTTKD 424 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc-c--ccHHHHHHHHHh-ccceEEEeeCCccccccccchhh
Confidence 35899999999988765531 11122246899999984 2 222222233333 4477899999963111111 011
Q ss_pred hcCCCeEEeecccccccc--ceEEEEee------hh--------------------------------------hhhHHH
Q 011446 314 YLQKPYVINLMDELTLKG--ITQYYAFV------EE--------------------------------------RQKVHC 347 (485)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~--------------------------------------~~~~~~ 347 (485)
.+................ +..+|... .. ......
T Consensus 425 ~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~ 504 (962)
T COG0610 425 VFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRA 504 (962)
T ss_pred hhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHH
Confidence 111111111110000000 00000000 00 000011
Q ss_pred HHHHH----H-hcCCCcEEEEecChhHHHHHHHHHHHcC-------------------Ce----EEEEcCCCCHHHHHHH
Q 011446 348 LNTLF----S-KLQINQSIIFCNSVNRVELLAKKITELG-------------------YS----CFYIHAKMLQDHRNRV 399 (485)
Q Consensus 348 l~~l~----~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~-------------------~~----~~~~h~~~~~~~r~~i 399 (485)
...++ . .....++.+.|.++..+..+++...... +. ....|... ...+...
T Consensus 505 a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 583 (962)
T COG0610 505 AKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKKDL 583 (962)
T ss_pred HHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHhhh
Confidence 11111 1 1233477778888775555555443310 00 00001111 2223334
Q ss_pred HHH--HhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhcccc
Q 011446 400 FHD--FRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 400 ~~~--f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~ 451 (485)
..+ .+....++||.++++-+|+|-|.+.. +-+|-|.---..+|.+-|+.|.
T Consensus 584 ~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 584 IKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred hhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccC
Confidence 444 34567899999999999999998755 4477777777899999999995
No 167
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=1.6e-09 Score=105.05 Aligned_cols=314 Identities=19% Similarity=0.238 Sum_probs=195.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEE-ccCCCch--hHHhHHHHHhhhhc----------------------------cCC
Q 011446 139 GFERPSPIQEESIPIALTGSDILAR-AKNGTGK--TAAFCIPALEKIDQ----------------------------DNN 187 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~-~~TGsGK--T~~~~~~~l~~l~~----------------------------~~~ 187 (485)
.-..+++.|.+.+..+.+.+|++.. ...+.|+ +-.|++-++.++.. +-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3457899999999999999997653 3345555 56778888877622 112
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCc-eE---------E---------------------EEECCCChH-------
Q 011446 188 VIQVVILVPTRELALQTSQVCKELGKHLNI-QV---------M---------------------VTTGGTSLK------- 229 (485)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~-~v---------~---------------------~~~g~~~~~------- 229 (485)
.++|||+||+|+.|..+.+.+..+.....- +. . .+.|.++..
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 478999999999998888888777433221 00 0 011111100
Q ss_pred --HHH--HHhcCCCeEEEEcchHHHHhhh------cCccccCCcceEEeeccccccCCCCHHHHHHH---HHhCCCC---
Q 011446 230 --DDI--MRLYQPVHLLVGTPGRILDLSK------KGVCILKDCSMLVMDEADKLLSPEFQPSVEQL---IRFLPAN--- 293 (485)
Q Consensus 230 --~~~--~~~~~~~~Ili~Tp~~l~~~~~------~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i---~~~~~~~--- 293 (485)
..+ .......+|+||+|=-|.-++. ++...++++.++|||.||-++...|.. +..+ +..+|..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh-l~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH-LLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH-HHHHHHHhhcCcccccC
Confidence 000 0112368999999988776665 224458889999999999877555433 2233 3333322
Q ss_pred ------------------CcEEEEecccchHHHHHHHHhcCCCeE-Ee---eccccccc----cceEEEEeeh-------
Q 011446 294 ------------------RQILMFSATFPVTVKDFKDKYLQKPYV-IN---LMDELTLK----GITQYYAFVE------- 340 (485)
Q Consensus 294 ------------------~~~i~~SATl~~~~~~~~~~~~~~~~~-~~---~~~~~~~~----~~~~~~~~~~------- 340 (485)
+|++++|+--.+....+...++.+-.- +. +...-... .+.+.+..+.
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 377888877666666666655543211 11 11110000 1111111111
Q ss_pred hhhhH-HHHHHHHHhcC---CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 011446 341 ERQKV-HCLNTLFSKLQ---INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 416 (485)
Q Consensus 341 ~~~~~-~~l~~l~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~ 416 (485)
.+... -++..++.... ..-+|||.|+.-+--++..++++..+....+|.-.+...-.+.-+.|-.|..+||+-|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 11111 12333333222 235799999999999999999998877776665555555666677899999999999997
Q ss_pred cc--cCCCCCCCCEEEEcCCCCChHHH---HHHhhhccccCc
Q 011446 417 FT--RGIDIQAVNVVINFDFPKNSETY---LHRVCWIQLSFS 453 (485)
Q Consensus 417 ~~--~Gidi~~v~~VI~~~~p~s~~~~---~Qr~GRagR~g~ 453 (485)
+- +-.+|.+|+.||+|.+|..+.-| +-+.+|+---|+
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn 653 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGN 653 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCC
Confidence 64 67899999999999999998766 445555544443
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.7e-09 Score=102.71 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=55.8
Q ss_pred CCcHHHHHHHH----HHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCC---ceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 142 RPSPIQEESIP----IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN---VIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 142 ~~~~~Q~~~i~----~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~---~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
.++|.|.+.+. .+..+.++++.+|||+|||++++.|++.++...+. +.+++|.++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 36999999555 44567889999999999999999999987665333 238999999999988877766654
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.7e-09 Score=102.71 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=55.8
Q ss_pred CCcHHHHHHHH----HHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCC---ceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 142 RPSPIQEESIP----IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN---VIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 142 ~~~~~Q~~~i~----~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~---~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
.++|.|.+.+. .+..+.++++.+|||+|||++++.|++.++...+. +.+++|.++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 36999999555 44567889999999999999999999987665333 238999999999988877766654
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.92 E-value=1.7e-08 Score=93.32 Aligned_cols=127 Identities=21% Similarity=0.241 Sum_probs=93.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|++.|.-++-.+..|+ |+...||-|||++..+|+.-....+ ..|-|++.+..||..-++++..+...+|+.+..
T Consensus 77 ~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G---~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~ 151 (266)
T PF07517_consen 77 RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG---KGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGI 151 (266)
T ss_dssp ---HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS---S-EEEEESSHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc---CCcEEEeccHHHhhccHHHHHHHHHHhhhcccc
Confidence 78999998887776655 9999999999999988877665543 378888999999999999999999999999999
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHH-hhhc----C--ccccCCcceEEeecccccc
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILD-LSKK----G--VCILKDCSMLVMDEADKLL 275 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~-~~~~----~--~~~l~~~~~iViDEah~~~ 275 (485)
...+......... ..++|+|+|...+.- ++.. . ......+.++||||||.++
T Consensus 152 ~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 152 ITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred CccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9998875443333 356899999998753 2221 1 2225678999999999765
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.89 E-value=3.4e-10 Score=117.69 Aligned_cols=259 Identities=17% Similarity=0.219 Sum_probs=156.5
Q ss_pred CCcHHHHHHHHHHhc-CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEE
Q 011446 142 RPSPIQEESIPIALT-GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~ 220 (485)
.+.|.|...+..+.+ ..++++.+|||+|||.+|.+.++..+...+. .+++|++|..+|+..-.+.+.......|+++.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 566788777766554 3568999999999999999998887776554 59999999999998877777666666688899
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC--ccccCCcceEEeeccccccCCCCHHHHHHHHHh-------CC
Q 011446 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF-------LP 291 (485)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~-------~~ 291 (485)
...|..... ..-...++++|+||+++..+..+| ...+.+++.+|+||.|++. .+..+.++.+... ..
T Consensus 1006 e~tgd~~pd---~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg-~~rgPVle~ivsr~n~~s~~t~ 1081 (1230)
T KOG0952|consen 1006 ELTGDVTPD---VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG-EDRGPVLEVIVSRMNYISSQTE 1081 (1230)
T ss_pred eccCccCCC---hhheecCceEEcccccccCccccccchhhhccccceeeccccccc-CCCcceEEEEeeccccCccccC
Confidence 888877655 122346799999999998877754 4457889999999999864 4545544444322 23
Q ss_pred CCCcEEEEecccchHHHHHHHHhcCCCeEEeec-------cccccccceE-EEEeehhhhhHHHHHHHHHhcCCCcEEEE
Q 011446 292 ANRQILMFSATFPVTVKDFKDKYLQKPYVINLM-------DELTLKGITQ-YYAFVEERQKVHCLNTLFSKLQINQSIIF 363 (485)
Q Consensus 292 ~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~lVf 363 (485)
+..+.+++|.-+ ....++.+.....+. .... .+....+..- +++.-...........+....+..++|||
T Consensus 1082 ~~vr~~glsta~-~na~dla~wl~~~~~-~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lif 1159 (1230)
T KOG0952|consen 1082 EPVRYLGLSTAL-ANANDLADWLNIKDM-YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIF 1159 (1230)
T ss_pred cchhhhhHhhhh-hccHHHHHHhCCCCc-CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEE
Confidence 345666665443 233444443332222 1111 1111111111 11111111112334445555566799999
Q ss_pred ecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCcc
Q 011446 364 CNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACR 409 (485)
Q Consensus 364 ~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~ 409 (485)
+.++.....-+..|... .-+...++.+ ..+-+.++..-++...+
T Consensus 1160 v~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1160 VSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred eecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 99987655444333221 1122333333 44445555554444433
No 172
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.88 E-value=1.7e-07 Score=94.83 Aligned_cols=101 Identities=16% Similarity=0.190 Sum_probs=84.2
Q ss_pred CcEEEEecChhHHHHHHHHHHHcC------------------CeEEEEcCCCCHHHHHHHHHHHhcC--C-ccEEEEccc
Q 011446 358 NQSIIFCNSVNRVELLAKKITELG------------------YSCFYIHAKMLQDHRNRVFHDFRNG--A-CRNLVCTDL 416 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~~------------------~~~~~~h~~~~~~~r~~i~~~f~~g--~-~~vlvaT~~ 416 (485)
.++|||..+......+.+.|.+.. ...+.+.|..+..+|++++++|... - .-++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 378999999999999998887741 2345678888999999999999753 2 247889999
Q ss_pred cccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc
Q 011446 417 FTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 417 ~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
..-||++-....+|.|+.-++..--.|.+.|+.|+|+...-.
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpcf 841 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCF 841 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCcee
Confidence 999999999999999999999999999999999998765444
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.68 E-value=2.6e-07 Score=98.59 Aligned_cols=142 Identities=20% Similarity=0.309 Sum_probs=85.2
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHH-----HHhcc----CCceEEEEECCC---
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK-----ELGKH----LNIQVMVTTGGT--- 226 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~-----~~~~~----~~~~v~~~~g~~--- 226 (485)
++.+.++||+|||.+|+-.++.....-+. .+.||+||+.++...+...+. ..+.. ..+....+.++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~-~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGL-FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 68899999999999998888776555444 489999999998877765543 22221 123333332221
Q ss_pred ----ChHHHHHHhc-------CCCeEEEEcchHHHHhhh-cCc----------cccCCc----ceEEeeccccccCCCCH
Q 011446 227 ----SLKDDIMRLY-------QPVHLLVGTPGRILDLSK-KGV----------CILKDC----SMLVMDEADKLLSPEFQ 280 (485)
Q Consensus 227 ----~~~~~~~~~~-------~~~~Ili~Tp~~l~~~~~-~~~----------~~l~~~----~~iViDEah~~~~~~~~ 280 (485)
+......... +...|+++|.+.|..-.. ... ..+..+ -+||+||.|++-.. .
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~ 217 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--N 217 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--h
Confidence 1122222221 147899999998865211 000 111111 37999999998442 2
Q ss_pred HHHHHHHHhCCCCCcEEEEecccch
Q 011446 281 PSVEQLIRFLPANRQILMFSATFPV 305 (485)
Q Consensus 281 ~~~~~i~~~~~~~~~~i~~SATl~~ 305 (485)
..+..+ ..+.+.. ++.+|||.+.
T Consensus 218 k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HHHHHH-HhcCccc-EEEEeeecCC
Confidence 345555 4444433 5779999975
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.65 E-value=8.4e-07 Score=91.32 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=42.4
Q ss_pred CCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccc
Q 011446 406 GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQL 450 (485)
Q Consensus 406 g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR 450 (485)
..++.|++-.++.+|.|-|+|-.++-.....|..+-.|.+||.-|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 457899999999999999999999999999999999999999999
No 175
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.60 E-value=2.7e-07 Score=98.21 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=55.2
Q ss_pred cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEeccc
Q 011446 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (485)
Q Consensus 236 ~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl 303 (485)
.....|+++||..|..-+..+...++.++.||+||||++.+..-...+..+.....+..-+.+|||.+
T Consensus 5 y~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred hhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 45678999999999887777788899999999999999877666666667776666666788888885
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.58 E-value=2e-07 Score=86.18 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHhhh------hccCCceEEEEEcCcHHHHHHHHHHHHH
Q 011446 142 RPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKI------DQDNNVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l------~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
++++.|.+|+..++.... .+|.||+|+|||..... ++..+ .....+.++|+++|+...+..+.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 99999999999976443 33333 1133455899999999998888777666
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.57 E-value=4.5e-07 Score=81.14 Aligned_cols=123 Identities=21% Similarity=0.236 Sum_probs=72.7
Q ss_pred CCcHHHHHHHHHHhcCC--CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceE
Q 011446 142 RPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v 219 (485)
++++-|.+++..++... -++|.|+.|+|||++ +..+...+... +.++++++||...+..+.+. . ++.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~----~---~~~- 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA--GKRVIGLAPTNKAAKELREK----T---GIE- 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT--T--EEEEESSHHHHHHHHHH----H---TS--
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC--CCeEEEECCcHHHHHHHHHh----h---Ccc-
Confidence 36789999999998654 378889999999986 34455555443 35899999998876554333 1 111
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCc----cccCCcceEEeeccccccCCCCHHHHHHHHHhCCC-CC
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV----CILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA-NR 294 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~----~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~-~~ 294 (485)
..|-..++....... ..+.+.++||||||-.+. ...+..++...+. +.
T Consensus 70 -----------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 70 -----------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGA 122 (196)
T ss_dssp -----------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-
T ss_pred -----------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCC
Confidence 122222222111111 115567899999999763 4557777777766 67
Q ss_pred cEEEEecc
Q 011446 295 QILMFSAT 302 (485)
Q Consensus 295 ~~i~~SAT 302 (485)
++|++.=+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 77666554
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.54 E-value=1e-07 Score=84.59 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=75.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHH---HHHHHHhccCCc
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS---QVCKELGKHLNI 217 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~---~~~~~~~~~~~~ 217 (485)
...+..|..++.++....-+++.||.|||||+.++..+++.+..+. -.+++|+-|..+....+- ..+.+.....-.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-YDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT----SS---------TTTH
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 3467899999999997788999999999999999999998887743 337888878765321110 001110000000
Q ss_pred eE----EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCC
Q 011446 218 QV----MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPAN 293 (485)
Q Consensus 218 ~v----~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 293 (485)
.+ ..+.+... ...+.....|-+.++..+ ++. .+++ .+||+|||+.+ -...++.++.++..+
T Consensus 82 p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~i-----RGr-t~~~-~~iIvDEaQN~----t~~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 82 PIYDALEELFGKEK----LEELIQNGKIEIEPLAFI-----RGR-TFDN-AFIIVDEAQNL----TPEELKMILTRIGEG 146 (205)
T ss_dssp HHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGG-----TT---B-S-EEEEE-SGGG------HHHHHHHHTTB-TT
T ss_pred HHHHHHHHHhChHh----HHHHhhcCeEEEEehhhh-----cCc-cccc-eEEEEecccCC----CHHHHHHHHcccCCC
Confidence 00 00001111 111222445555555432 111 1332 79999999975 456788889999989
Q ss_pred CcEEEEecc
Q 011446 294 RQILMFSAT 302 (485)
Q Consensus 294 ~~~i~~SAT 302 (485)
.+++++.=.
T Consensus 147 skii~~GD~ 155 (205)
T PF02562_consen 147 SKIIITGDP 155 (205)
T ss_dssp -EEEEEE--
T ss_pred cEEEEecCc
Confidence 998877654
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.39 E-value=4.5e-06 Score=77.52 Aligned_cols=159 Identities=21% Similarity=0.174 Sum_probs=102.6
Q ss_pred CCcHHHHHHHHHHhc----------CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 142 RPSPIQEESIPIALT----------GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~----------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
.+...|.+++-.+.. ..-.++-..||.||--+..--+++.+..+. .+.|.++.+..|..+..+.++.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--~r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--KRAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--CceEEEECChhhhhHHHHHHHHh
Confidence 467788888776552 234889999999999887777777776543 26899999999998888888887
Q ss_pred hccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC---cccc--------CC-cceEEeeccccccCCCC
Q 011446 212 GKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG---VCIL--------KD-CSMLVMDEADKLLSPEF 279 (485)
Q Consensus 212 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~---~~~l--------~~-~~~iViDEah~~~~~~~ 279 (485)
+.. .+.+..+..-... ....-.-.|+++|+..|....... ...+ .+ =.+||+||||.+.+..-
T Consensus 115 G~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 115 GAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 654 2333222211100 001124569999999987754321 1111 11 15899999998866432
Q ss_pred --------HHHHHHHHHhCCCCCcEEEEecccchHHH
Q 011446 280 --------QPSVEQLIRFLPANRQILMFSATFPVTVK 308 (485)
Q Consensus 280 --------~~~~~~i~~~~~~~~~~i~~SATl~~~~~ 308 (485)
...+..+...+| +.+++.+|||--.+.+
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPR 225 (303)
T ss_pred cCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCc
Confidence 234455556664 5669999999754443
No 180
>PRK10536 hypothetical protein; Provisional
Probab=98.35 E-value=8.1e-06 Score=74.59 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=83.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHH-----------HHHHH
Q 011446 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELAL-----------QTSQV 207 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~-----------q~~~~ 207 (485)
++...+..|...+.++.++..+++.||+|||||+.+...+++.+.... -.+++|.-|...... .+..+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 455677889999999988778999999999999998877776664432 235555556654221 11111
Q ss_pred HHHHhccCCceEEEEECCCChHHHHHHh-cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHH
Q 011446 208 CKELGKHLNIQVMVTTGGTSLKDDIMRL-YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQL 286 (485)
Q Consensus 208 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i 286 (485)
+.-+...+.. +.+..... ..+ .....|-|.....+ + + ..+. -++||+|||+.+. ...+..+
T Consensus 135 ~~pi~D~L~~----~~~~~~~~---~~~~~~~~~Iei~~l~ym-R----G-rtl~-~~~vIvDEaqn~~----~~~~k~~ 196 (262)
T PRK10536 135 FRPVYDVLVR----RLGASFMQ---YCLRPEIGKVEIAPFAYM-R----G-RTFE-NAVVILDEAQNVT----AAQMKMF 196 (262)
T ss_pred HHHHHHHHHH----HhChHHHH---HHHHhccCcEEEecHHHh-c----C-Cccc-CCEEEEechhcCC----HHHHHHH
Confidence 1111111100 11111111 111 12234445444322 1 1 1132 3899999999752 4678888
Q ss_pred HHhCCCCCcEEEEec
Q 011446 287 IRFLPANRQILMFSA 301 (485)
Q Consensus 287 ~~~~~~~~~~i~~SA 301 (485)
+.++..+.++|++.=
T Consensus 197 ltR~g~~sk~v~~GD 211 (262)
T PRK10536 197 LTRLGENVTVIVNGD 211 (262)
T ss_pred HhhcCCCCEEEEeCC
Confidence 999998888766543
No 181
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.32 E-value=1.4e-06 Score=90.79 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=89.8
Q ss_pred cEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCc-c-EEEEccccccCCCCCCCCEEEEcCCCC
Q 011446 359 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC-R-NLVCTDLFTRGIDIQAVNVVINFDFPK 436 (485)
Q Consensus 359 ~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~-~-vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (485)
+++||+.-...+..++..|...++....+.|.|+...|.+.+..|..+.. + .+++..+...|+++..+.+|+..|+-+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 89999999999999999998889999999999999999999999985532 2 366788999999999999999999999
Q ss_pred ChHHHHHHhhhccccCcccccc
Q 011446 437 NSETYLHRVCWIQLSFSLSLPN 458 (485)
Q Consensus 437 s~~~~~Qr~GRagR~g~~~~~~ 458 (485)
|+...-|.+-||.|.|+--...
T Consensus 621 np~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred ChHHHHHHHHHHHHhcccceee
Confidence 9999999999999998876655
No 182
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.24 E-value=1.4e-05 Score=83.10 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=85.6
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhc---cCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEE
Q 011446 144 SPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ---DNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (485)
Q Consensus 144 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~ 220 (485)
.++|+.++..++.++-++|.|++|+|||++.. .++..+.. .....++++++||--.|..+.+.........+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 37999999999999999999999999998743 23332221 1112478999999887766655544432222110
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc------CccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCC
Q 011446 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK------GVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANR 294 (485)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~------~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~ 294 (485)
.... ....+-..|-.+++..... .......+++||||||-++ -...+..++..++.+.
T Consensus 224 --------~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv----d~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------EALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV----DLPLMAKLLKALPPNT 287 (586)
T ss_pred --------hhhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC----CHHHHHHHHHhcCCCC
Confidence 0000 0011123444444432211 1122336799999999865 3456777888888899
Q ss_pred cEEEEecc
Q 011446 295 QILMFSAT 302 (485)
Q Consensus 295 ~~i~~SAT 302 (485)
++|++.=.
T Consensus 288 rlIlvGD~ 295 (586)
T TIGR01447 288 KLILLGDK 295 (586)
T ss_pred EEEEECCh
Confidence 98876544
No 183
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.19 E-value=2.7e-05 Score=81.07 Aligned_cols=140 Identities=21% Similarity=0.249 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhc--cCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 144 SPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ--DNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 144 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~--~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.++|+.|+...+.++-++|.|++|+|||++... ++..+.. .....+++++.||...|..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 589999999999999999999999999987432 2332322 1223578888999988777666554433322210
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc------CccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCc
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK------GVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ 295 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~------~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~ 295 (485)
.... .....-..|-.+|+..... .....-.+++||||||-++ -...+..++..++++.+
T Consensus 230 --------~~~~---~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 --------DEQK---KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALPPHAR 294 (615)
T ss_pred --------hhhh---hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcccCCE
Confidence 0000 0001112344444332111 1112335689999999865 35667788888999999
Q ss_pred EEEEecc
Q 011446 296 ILMFSAT 302 (485)
Q Consensus 296 ~i~~SAT 302 (485)
+|++.=.
T Consensus 295 lIlvGD~ 301 (615)
T PRK10875 295 VIFLGDR 301 (615)
T ss_pred EEEecch
Confidence 8887654
No 184
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.17 E-value=3e-05 Score=82.92 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=79.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEE
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~ 220 (485)
..+++.|++++..+..++.++|.|++|+|||++. -.++..+...+....+++++||-..|..+.+ . .+...
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e----~---~g~~a- 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGE----V---TGLTA- 392 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHH----h---cCCcc-
Confidence 4789999999999998888999999999999873 3344444433222468888999877643322 1 12111
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc-----CccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCc
Q 011446 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-----GVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ 295 (485)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~-----~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~ 295 (485)
.|-.+++.+... ........++||||||+.+. ...+..++..++.+.+
T Consensus 393 -----------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 393 -----------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHAR 445 (720)
T ss_pred -----------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCE
Confidence 111111111000 00112357899999999763 3456777788888888
Q ss_pred EEEEecc
Q 011446 296 ILMFSAT 302 (485)
Q Consensus 296 ~i~~SAT 302 (485)
+|++.=+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8876554
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.16 E-value=5.3e-06 Score=82.73 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=51.8
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHH
Q 011446 142 RPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQV 207 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~ 207 (485)
.+.+-|..|+....+.++ .+|.||+|+|||......+.+.+... .++||..||.+.+..+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHH
Confidence 567889999999998876 78899999999998766666666654 3899999999988777664
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.16 E-value=9.2e-06 Score=79.88 Aligned_cols=108 Identities=16% Similarity=0.138 Sum_probs=64.0
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCC
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP 238 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 238 (485)
.++|.|.+|||||+.++-.+. .+.....+..++++|+...|...+...+..... . ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~--~--------------------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN--P--------------------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-HhhccccCCceEEEEecchHHHHHHHHHhhhcc--c--------------------ch
Confidence 478999999999998544333 332223344789999999997666655544320 0 00
Q ss_pred CeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC-------CHHHHHHHHHh
Q 011446 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-------FQPSVEQLIRF 289 (485)
Q Consensus 239 ~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-------~~~~~~~i~~~ 289 (485)
....+..+..+.............+++|||||||++.... ....+..++..
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1122333344433222112345689999999999987621 23555566555
No 187
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.07 E-value=1.6e-05 Score=79.84 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=63.1
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhc
Q 011446 134 GIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGK 213 (485)
Q Consensus 134 ~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~ 213 (485)
.+...++.+++.-|..|+.+++...-.||.||+|+|||....--++..... . ..++||++|+...+.|+++.+.+-
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~-~~~VLvcApSNiAVDqLaeKIh~t-- 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-H-AGPVLVCAPSNIAVDQLAEKIHKT-- 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-c-CCceEEEcccchhHHHHHHHHHhc--
Confidence 444557778899999999999999999999999999998755444444333 3 348999999999888887776654
Q ss_pred cCCceEEEE
Q 011446 214 HLNIQVMVT 222 (485)
Q Consensus 214 ~~~~~v~~~ 222 (485)
+++|..+
T Consensus 478 --gLKVvRl 484 (935)
T KOG1802|consen 478 --GLKVVRL 484 (935)
T ss_pred --CceEeee
Confidence 3554443
No 188
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.05 E-value=5.7e-06 Score=72.01 Aligned_cols=84 Identities=21% Similarity=0.331 Sum_probs=60.3
Q ss_pred HHHHhcCCCcEEEEecChhHHHHHHHHHHHcCC--eEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc--ccccCCCCCC
Q 011446 350 TLFSKLQINQSIIFCNSVNRVELLAKKITELGY--SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD--LFTRGIDIQA 425 (485)
Q Consensus 350 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~--~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~--~~~~Gidi~~ 425 (485)
.+++.. ++.+|||++|....+.+.+.+..... ....+.. .......+++.|..+...||+++. .+.+|||+++
T Consensus 3 ~l~~~~-~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAV-PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCC-SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcC-CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 344443 48899999999999999999876531 1122222 255778899999999999999999 9999999997
Q ss_pred --CCEEEEcCCCC
Q 011446 426 --VNVVINFDFPK 436 (485)
Q Consensus 426 --v~~VI~~~~p~ 436 (485)
++.||..++|-
T Consensus 80 ~~~r~vii~glPf 92 (167)
T PF13307_consen 80 DLLRAVIIVGLPF 92 (167)
T ss_dssp ESEEEEEEES---
T ss_pred chhheeeecCCCC
Confidence 66799899873
No 189
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.05 E-value=0.00011 Score=65.93 Aligned_cols=144 Identities=26% Similarity=0.317 Sum_probs=89.8
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhc---CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHH
Q 011446 128 KRELLMGIFEKGFERPSPIQEESIPIALT---GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT 204 (485)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~---~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (485)
++.++-.+.. ++ .+++.|.+....+.+ +.+.+...-+|.|||.+ ++|++..+...+.. -+.+++|. +|..|.
T Consensus 11 P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~-LvrviVpk-~Ll~q~ 85 (229)
T PF12340_consen 11 PDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR-LVRVIVPK-ALLEQM 85 (229)
T ss_pred hHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc-EEEEEcCH-HHHHHH
Confidence 3444444432 33 689999999998886 46899999999999998 88888887765543 56666775 677888
Q ss_pred HHHHHHHhc-cCCceEEEE--ECCCChH--------HHHHHhcCCCeEEEEcchHHHHhhhcC-----------------
Q 011446 205 SQVCKELGK-HLNIQVMVT--TGGTSLK--------DDIMRLYQPVHLLVGTPGRILDLSKKG----------------- 256 (485)
Q Consensus 205 ~~~~~~~~~-~~~~~v~~~--~g~~~~~--------~~~~~~~~~~~Ili~Tp~~l~~~~~~~----------------- 256 (485)
.+.+..... -++-.+..+ ....... ...........|+++||+.++.+...+
T Consensus 86 ~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~ 165 (229)
T PF12340_consen 86 RQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLK 165 (229)
T ss_pred HHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 877665443 333333332 2222211 111122346679999999887632211
Q ss_pred -ccccCCcceEEeeccccccC
Q 011446 257 -VCILKDCSMLVMDEADKLLS 276 (485)
Q Consensus 257 -~~~l~~~~~iViDEah~~~~ 276 (485)
...+.+...=|+||+|.++.
T Consensus 166 ~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 166 IQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHhcCCeEeECchhccC
Confidence 01133445578999997664
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.99 E-value=2.6e-05 Score=57.74 Aligned_cols=59 Identities=25% Similarity=0.337 Sum_probs=39.1
Q ss_pred HHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhc-cCCceEEEEEcCcHHHHHHHHHHH
Q 011446 150 SIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVC 208 (485)
Q Consensus 150 ~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~ 208 (485)
++...+.+ +-++|.||+|||||...+-.+...+.. ...+.++++++|++..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34433343 446679999999997755544444421 112558999999999987766655
No 191
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.96 E-value=8.8e-07 Score=91.30 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhc---CCccEEEEcccc
Q 011446 343 QKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN---GACRNLVCTDLF 417 (485)
Q Consensus 343 ~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~---g~~~vlvaT~~~ 417 (485)
.|..+|...+.+. ...+++||..-....+.+.+.+...+ ....+.|......|...+++|.. .....|++|.+.
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 3455555666554 33499999999999999999998777 78889999999999999999973 346678999987
Q ss_pred ccC
Q 011446 418 TRG 420 (485)
Q Consensus 418 ~~G 420 (485)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 765
No 192
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.91 E-value=0.0001 Score=77.64 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=51.5
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHH
Q 011446 141 ERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
..+++.|.+++..++.. ..++|.||+|+|||....-.+.+.+.. +.++++++||...+..+.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35789999999999887 458899999999998754444443332 23899999999988777776654
No 193
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.90 E-value=4.2e-05 Score=72.08 Aligned_cols=147 Identities=16% Similarity=0.259 Sum_probs=89.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCC--EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHH----HHHHHH
Q 011446 138 KGFERPSPIQEESIPIALTGSD--ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS----QVCKEL 211 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~----~~~~~~ 211 (485)
.|+...+..|.-|+.+++.... |.+.|+.|||||+.++.+.+......+.-.++||.=|+...-.++- ..-.++
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm 303 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKM 303 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhc
Confidence 4777778899999999998754 7889999999999988888877766555557777778765532210 000111
Q ss_pred hccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCc----------ceEEeeccccccCCCCHH
Q 011446 212 GKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDC----------SMLVMDEADKLLSPEFQP 281 (485)
Q Consensus 212 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~----------~~iViDEah~~~~~~~~~ 281 (485)
..++ + .+.+....+.... =|+.+.+...+.+....+..+ .+||||||+.+ -..
T Consensus 304 ~PWm--------q--~i~DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL----Tph 366 (436)
T COG1875 304 GPWM--------Q--AIFDNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL----TPH 366 (436)
T ss_pred cchH--------H--HHHhHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----CHH
Confidence 1111 0 1111111111111 122344444444332222222 58999999976 456
Q ss_pred HHHHHHHhCCCCCcEEEEec
Q 011446 282 SVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 282 ~~~~i~~~~~~~~~~i~~SA 301 (485)
.++.++.+.-++.+++++.-
T Consensus 367 eikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 367 ELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred HHHHHHHhccCCCEEEEcCC
Confidence 68899999999998777643
No 194
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=0.00016 Score=71.11 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=71.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhcc-CCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 234 (485)
+.++++||||+|||++..-.+....... ..+.++.+++ +.|.-+. ..++.++...++.+....
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~~~----------- 240 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKAIE----------- 240 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEeeC-----------
Confidence 4588999999999998654443322211 1223444444 5555553 235555555555443211
Q ss_pred hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC-CHHHHHHHHHhCCCC-CcEEEEecccchH-HHHHH
Q 011446 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-FQPSVEQLIRFLPAN-RQILMFSATFPVT-VKDFK 311 (485)
Q Consensus 235 ~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-~~~~~~~i~~~~~~~-~~~i~~SATl~~~-~~~~~ 311 (485)
++..+...+.. +.++++|+||++.+..... ....+..++....++ ..++.+|||.... +.+..
T Consensus 241 ----------~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 241 ----------SFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred ----------cHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 23334333332 4578999999999865321 223444555555433 4678999997533 34444
Q ss_pred HHh
Q 011446 312 DKY 314 (485)
Q Consensus 312 ~~~ 314 (485)
..+
T Consensus 307 ~~~ 309 (388)
T PRK12723 307 HQF 309 (388)
T ss_pred HHh
Confidence 444
No 195
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.72 E-value=0.00062 Score=74.49 Aligned_cols=123 Identities=20% Similarity=0.134 Sum_probs=76.3
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEE
Q 011446 142 RPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~ 220 (485)
.+++-|.+++..++.+++ ++|.|..|+|||+. +-.+...+... +.+++.++||-..+..+ . ...++..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L----~---e~tGi~a- 414 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENL----E---GGSGIAS- 414 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHH----h---hccCcch-
Confidence 689999999999998665 78999999999987 44444444432 44788899997654322 2 1222211
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhC-CCCCcEEEE
Q 011446 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMF 299 (485)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~ 299 (485)
.|-..|+.-+..+...+...++||||||-.+.. ..+..++... +.+.++|++
T Consensus 415 -----------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 415 -----------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred -----------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCCCEEEEE
Confidence 011222211122233356778999999997643 3345555533 456777776
Q ss_pred ecc
Q 011446 300 SAT 302 (485)
Q Consensus 300 SAT 302 (485)
.=+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 655
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.70 E-value=0.0008 Score=72.48 Aligned_cols=121 Identities=20% Similarity=0.173 Sum_probs=73.3
Q ss_pred CCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEE
Q 011446 142 RPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~ 220 (485)
.+++-|.+++..++.+ +-++|.|++|+|||+.. -.+...+... +.++++++||-..+..+. + ..++...
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~--g~~V~~~ApTg~Aa~~L~----~---~~g~~a~ 421 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA--GYRVIGAALSGKAAEGLQ----A---ESGIESR 421 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC--CCeEEEEeCcHHHHHHHH----h---ccCCcee
Confidence 5899999999999875 55899999999999873 3344444332 347888999976543322 1 2222211
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHh-CCCCCcEEEE
Q 011446 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF-LPANRQILMF 299 (485)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~-~~~~~~~i~~ 299 (485)
|-.+++.-+......+...++||||||-.+... .+..++.. ...+.++|++
T Consensus 422 ------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 422 ------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGAKVVLV 473 (744)
T ss_pred ------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEE
Confidence 112221111222333567899999999876432 23445542 3356777766
Q ss_pred e
Q 011446 300 S 300 (485)
Q Consensus 300 S 300 (485)
.
T Consensus 474 G 474 (744)
T TIGR02768 474 G 474 (744)
T ss_pred C
Confidence 5
No 197
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.69 E-value=0.00021 Score=74.49 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=46.7
Q ss_pred CcEEEEecChhHHHHHHHHHHHc-------CCeEEEEcCCCCHHHHHHHHHHHhc--------CCccEEEEccccccCCC
Q 011446 358 NQSIIFCNSVNRVELLAKKITEL-------GYSCFYIHAKMLQDHRNRVFHDFRN--------GACRNLVCTDLFTRGID 422 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~i~~~f~~--------g~~~vlvaT~~~~~Gid 422 (485)
.-+|||+++....+.+.+..... +..-+.+--. +...-.+++..|.+ |..-..||-.-.++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 34899999998777775444331 1111111111 22333444445532 34445677778899999
Q ss_pred CCC--CCEEEEcCCCC
Q 011446 423 IQA--VNVVINFDFPK 436 (485)
Q Consensus 423 i~~--v~~VI~~~~p~ 436 (485)
+.| .+.||..|+|-
T Consensus 641 FsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPY 656 (945)
T ss_pred ccccCCceeEEecCCC
Confidence 987 55799888864
No 198
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.69 E-value=0.00035 Score=62.29 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=72.8
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 236 (485)
.++++||||+|||++..-.+...... +. ++.+++ ..|.-+ .+.++.+++.+++.+.......+..+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~--~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~------ 70 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GK--KVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAE------ 70 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T----EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHH------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cc--cceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHH------
Confidence 37889999999999865555444444 33 343333 455555 34455555555665544222111111
Q ss_pred CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHh
Q 011446 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (485)
.+.+.+.. ...+++++|+||-+-+... ......+..++....+..-.+.+|||...+....+..+
T Consensus 71 -----------~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 71 -----------IAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp -----------HHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred -----------HHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 11111221 1134578999999986432 22445666677777677778999999876655444443
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.60 E-value=0.00017 Score=59.86 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHHhHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~ 178 (485)
++.++|.|++|+|||.+....+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHH
Confidence 3558999999999998754433
No 200
>PRK04296 thymidine kinase; Provisional
Probab=97.56 E-value=0.00022 Score=63.54 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=24.4
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcC
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (485)
-.++.||+|+|||+.++-.+...... +.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 47889999999998865555444332 337777766
No 201
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.50 E-value=0.00092 Score=56.26 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
++.+++.||+|+|||..+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997633
No 202
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.50 E-value=0.00027 Score=68.34 Aligned_cols=122 Identities=16% Similarity=0.074 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc-CCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
+++-|.+++.. ....++|.|..|||||++.+.-+...+... ....++|++++|+..+..+.+.+...........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~-- 76 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQES-- 76 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccc--
Confidence 46789999888 678899999999999998665555555444 3445899999999999888887777654332100
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCcccc--CCcceEEeeccc
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCIL--KDCSMLVMDEAD 272 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l--~~~~~iViDEah 272 (485)
...............+.|+|.+.+...+.+..... -.-.+-++|+..
T Consensus 77 ----~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 77 ----SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ----TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ----cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00001111111234577889887766333211111 122456667666
No 203
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.50 E-value=0.0019 Score=71.19 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHH
Q 011446 127 LKRELLMGIFEKGFERPSPIQEESIPIALT-GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTS 205 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~ 205 (485)
+++..+......+ ..+++-|.+++..+.. ++-++|.|+.|+|||+. +-.+...+... +.+++.++||-..+..+
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~--G~~V~g~ApTgkAA~~L- 441 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA--GYRVVGGALAGKAAEGL- 441 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEEcCcHHHHHHH-
Confidence 4444555444433 3689999999998864 45589999999999987 33444444432 34788889996655332
Q ss_pred HHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHH
Q 011446 206 QVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQ 285 (485)
Q Consensus 206 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~ 285 (485)
. +..|+.... -..|+.....+...+..-++||||||..+. ...+..
T Consensus 442 ---~---e~~Gi~a~T------------------------Ias~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~ 487 (1102)
T PRK13826 442 ---E---KEAGIQSRT------------------------LSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMAL 487 (1102)
T ss_pred ---H---HhhCCCeee------------------------HHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHH
Confidence 2 222332211 111111111122335667899999999763 334555
Q ss_pred HHHhCC-CCCcEEEEecc
Q 011446 286 LIRFLP-ANRQILMFSAT 302 (485)
Q Consensus 286 i~~~~~-~~~~~i~~SAT 302 (485)
++.... .+.++|++.=+
T Consensus 488 Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 488 FVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHhcCCEEEEECCH
Confidence 665554 56777776655
No 204
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.43 E-value=0.0012 Score=69.76 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=77.8
Q ss_pred CCCCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 140 FERPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
+..++..|++|+-.++..+| .+|.|=+|+|||+.... ++..+... +.+||..+=|...+..+.-.++.+ ++.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~~--gkkVLLtsyThsAVDNILiKL~~~----~i~ 739 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVAL--GKKVLLTSYTHSAVDNILIKLKGF----GIY 739 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHHc--CCeEEEEehhhHHHHHHHHHHhcc----Ccc
Confidence 33688899999999998887 88899999999987433 33333322 237888887766654443333332 333
Q ss_pred EEEEECCCChHH-----------------HHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC
Q 011446 219 VMVTTGGTSLKD-----------------DIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS 276 (485)
Q Consensus 219 v~~~~g~~~~~~-----------------~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~ 276 (485)
+..+-....+.. ......+.+.|+.||---+.+.+. ..+.++++|||||-.++.
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEcccccccc
Confidence 322222222222 223444677888888755443332 245689999999987653
No 205
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0016 Score=63.54 Aligned_cols=130 Identities=17% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc-Cc-HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV-PT-RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~-P~-~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 234 (485)
+..++++||||+|||+.....+.......+.. ++.+++ .+ +.-+ .+.++.+++..++.+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~-~V~lit~D~~R~ga---~EqL~~~a~~~gv~~~~~------------ 200 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGAS-KVALLTTDSYRIGG---HEQLRIFGKILGVPVHAV------------ 200 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEecccccccH---HHHHHHHHHHcCCceEec------------
Confidence 45689999999999998655444433332222 343333 22 2223 334444444445444332
Q ss_pred hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC-HHHHHHHHHhCCCCCcEEEEecccchHH-HHHHH
Q 011446 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF-QPSVEQLIRFLPANRQILMFSATFPVTV-KDFKD 312 (485)
Q Consensus 235 ~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~-~~~~~~i~~~~~~~~~~i~~SATl~~~~-~~~~~ 312 (485)
.+++.+...+.+ +.+.++|+||++-+.....+ ...+..+.....+...++.+|||...+. .+.+.
T Consensus 201 ---------~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 201 ---------KDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred ---------CCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 223333332322 45678999999975432222 2222222222223345888999975443 33445
Q ss_pred Hhc
Q 011446 313 KYL 315 (485)
Q Consensus 313 ~~~ 315 (485)
.|.
T Consensus 268 ~f~ 270 (374)
T PRK14722 268 AYR 270 (374)
T ss_pred HHH
Confidence 443
No 206
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.0036 Score=62.83 Aligned_cols=128 Identities=23% Similarity=0.309 Sum_probs=66.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhh-hccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKI-DQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM 233 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l-~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 233 (485)
++.++++||||+|||+.....+.... ...+ .++.++. |.+.-+. +.+..++...++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g--~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~------------ 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGK--KKVALITLDTYRIGAV---EQLKTYAKIMGIPVEV------------ 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEECCccHHHHH---HHHHHHHHHhCCceEc------------
Confidence 45688999999999987654444333 2222 2444443 4444332 3333333333333322
Q ss_pred HhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC-CCHHHHHHHHHh-CCCCCcEEEEecccchH-HHHH
Q 011446 234 RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRF-LPANRQILMFSATFPVT-VKDF 310 (485)
Q Consensus 234 ~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~i~~~-~~~~~~~i~~SATl~~~-~~~~ 310 (485)
+.++..+...+.. +.++++|+||.+-+.... .....+..++.. ..+....+++|||.... +...
T Consensus 284 ---------~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 284 ---------VYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred ---------cCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 1233334443432 346899999998753221 122345555552 22334578899997643 3444
Q ss_pred HHHh
Q 011446 311 KDKY 314 (485)
Q Consensus 311 ~~~~ 314 (485)
...|
T Consensus 351 ~~~f 354 (424)
T PRK05703 351 YKHF 354 (424)
T ss_pred HHHh
Confidence 4444
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.36 E-value=0.0014 Score=63.22 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=73.6
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcC--cHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP--TRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P--~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 236 (485)
-+++.|++|+|||+...-.+. .+... +.+++++.. .|.-+. +.++.++...++.+.....+.+...
T Consensus 142 vi~~~G~~GvGKTTtiakLA~-~l~~~--g~~V~li~~Dt~R~~a~---eqL~~~a~~lgv~v~~~~~g~dp~~------ 209 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAY-YLKKN--GFSVVIAAGDTFRAGAI---EQLEEHAERLGVKVIKHKYGADPAA------ 209 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HHHHc--CCeEEEecCCcCcHHHH---HHHHHHHHHcCCceecccCCCCHHH------
Confidence 478899999999997543332 33332 235555542 233332 2333344444554432111111110
Q ss_pred CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhc
Q 011446 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYL 315 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~ 315 (485)
.+.+.+.. .....+++|++|.+.++.. ..+...+..+.....++..++.++||...+....+..|.
T Consensus 210 -----------v~~~ai~~--~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 210 -----------VAYDAIEH--AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred -----------HHHHHHHH--HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 01111111 0123578999999998753 345666777777777888899999998766666565554
No 208
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.34 E-value=0.0031 Score=61.27 Aligned_cols=133 Identities=20% Similarity=0.227 Sum_probs=77.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc-HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT-RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~-~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 235 (485)
++.+.++||||-|||+...-.+..+....+...-++|.+-| |.=| .+.++.++.-+++.+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA---~EQLk~Ya~im~vp~~vv------------- 266 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA---VEQLKTYADIMGVPLEVV------------- 266 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH---HHHHHHHHHHhCCceEEe-------------
Confidence 56789999999999998655554444333333345665544 3333 455556665556655443
Q ss_pred cCCCeEEEEcchHHHHhhhcCccccCCcceEEeecccccc-CCCCHHHHHHHHHhCCCCCcEEEEecccc-hHHHHHHHH
Q 011446 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL-SPEFQPSVEQLIRFLPANRQILMFSATFP-VTVKDFKDK 313 (485)
Q Consensus 236 ~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SATl~-~~~~~~~~~ 313 (485)
-+|.-|...+.. +.++++|.+|=+-+-. +......+..++....+..-.+.+|||.. .++.+....
T Consensus 267 --------~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~ 334 (407)
T COG1419 267 --------YSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQ 334 (407)
T ss_pred --------cCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHH
Confidence 344444433332 6677888888776532 12233445555555544445688999974 345555555
Q ss_pred hcCC
Q 011446 314 YLQK 317 (485)
Q Consensus 314 ~~~~ 317 (485)
|...
T Consensus 335 f~~~ 338 (407)
T COG1419 335 FSLF 338 (407)
T ss_pred hccC
Confidence 5443
No 209
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0034 Score=61.20 Aligned_cols=130 Identities=14% Similarity=0.103 Sum_probs=69.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEE-c-CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL-V-PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil-~-P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 235 (485)
+.+.++||||+|||+.....+.... ..+ .++.++ + |.|.-+ .+.++.++...++.+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~G--kkVglI~aDt~RiaA---vEQLk~yae~lgipv~v-------------- 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GKK--KTVGFITTDHSRIGT---VQQLQDYVKTIGFEVIA-------------- 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-HcC--CcEEEEecCCcchHH---HHHHHHHhhhcCCcEEe--------------
Confidence 4588999999999998665544332 222 244444 4 444333 23333444334443322
Q ss_pred cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC-CHHHHHHHHHhCCCCCcEEEEecccch-HHHHHHHH
Q 011446 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-FQPSVEQLIRFLPANRQILMFSATFPV-TVKDFKDK 313 (485)
Q Consensus 236 ~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SATl~~-~~~~~~~~ 313 (485)
..+|..+.+.+..... -.++++|+||-+=+..... ....+..++....++.-++.+|||... ++.+.+..
T Consensus 302 -------~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 302 -------VRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred -------cCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHH
Confidence 2244445444432110 1257999999987654321 233344555554555556779998653 44666655
Q ss_pred hc
Q 011446 314 YL 315 (485)
Q Consensus 314 ~~ 315 (485)
|-
T Consensus 374 F~ 375 (436)
T PRK11889 374 FK 375 (436)
T ss_pred hc
Confidence 54
No 210
>PRK06526 transposase; Provisional
Probab=97.30 E-value=0.0017 Score=60.35 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=21.6
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHhh
Q 011446 153 IALTGSDILARAKNGTGKTAAFCIPALEK 181 (485)
Q Consensus 153 ~i~~~~~~ii~~~TGsGKT~~~~~~~l~~ 181 (485)
.+..+.+++++||+|+|||..+...+...
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 44467889999999999998765444433
No 211
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.26 E-value=0.00065 Score=56.73 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=24.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
+..+++.||+|+|||+.....+. .+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~-~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR-ELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh-ccCCCC--CCEEEECCEEcc
Confidence 35689999999999997443222 222211 246667665543
No 212
>PRK08181 transposase; Validated
Probab=97.21 E-value=0.0079 Score=56.33 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=56.4
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHH
Q 011446 154 ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM 233 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 233 (485)
+..++++++.||+|+|||-.+...+..... . +..++++ +...|..++... .. ..
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~-~--g~~v~f~-~~~~L~~~l~~a----~~-----------~~------- 156 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIE-N--GWRVLFT-RTTDLVQKLQVA----RR-----------EL------- 156 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHH-c--CCceeee-eHHHHHHHHHHH----Hh-----------CC-------
Confidence 446678999999999999765433333322 2 2244444 444454333211 00 00
Q ss_pred HhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC-HHHHHHHHHhCCCCCcEEEEecccc
Q 011446 234 RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF-QPSVEQLIRFLPANRQILMFSATFP 304 (485)
Q Consensus 234 ~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~-~~~~~~i~~~~~~~~~~i~~SATl~ 304 (485)
+...++. .+.+++++||||++....... ...+..++........+|+.|-..+
T Consensus 157 -----------~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~ 210 (269)
T PRK08181 157 -----------QLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPF 210 (269)
T ss_pred -----------cHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 1111111 145678999999997644332 2345555555444455555555544
No 213
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.19 E-value=0.026 Score=67.05 Aligned_cols=236 Identities=14% Similarity=0.138 Sum_probs=121.8
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceE
Q 011446 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v 219 (485)
.+++-|.+++..++.. +-.+|.|+.|+|||+. +-.+...+... +.++++++|+-..+..+.+.. +...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~--G~~V~~lAPTgrAA~~L~e~~-------g~~A 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ--GYEIQIITAGSLSAQELRQKI-------PRLA 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHh-------cchh
Confidence 4788999999999876 4589999999999987 33444444432 448899999987654443321 1110
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhC-CCCCcEEE
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILM 298 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~ 298 (485)
.........+..+ .-..|...|+ . ....+...++||||||-.+. ...+..++... +.+.++|+
T Consensus 499 ------~Ti~~~l~~l~~~--~~~~tv~~fl---~-~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ------STFITWVKNLFND--DQDHTVQGLL---D-KSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred ------hhHHHHHHhhccc--ccchhHHHhh---c-ccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEE
Confidence 0111111111111 0111222222 1 22335677999999999763 33455666544 46788888
Q ss_pred Eecc--cc----hHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHH-HHHHHHHhcCCC-cEEEEecChhHH
Q 011446 299 FSAT--FP----VTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVH-CLNTLFSKLQIN-QSIIFCNSVNRV 370 (485)
Q Consensus 299 ~SAT--l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~-~~lVf~~~~~~~ 370 (485)
+.=+ ++ -.+...+.... -+.. .+......... ..+...+...... +...++...... .++|+.++.++.
T Consensus 563 vGD~~QL~sV~aG~~f~~L~~~g-v~t~-~l~~i~rq~~~-v~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~dr 639 (1960)
T TIGR02760 563 LNDSAQRQGMSAGSAIDLLKEGG-VTTY-AWVDTKQQKAS-VEISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTHREQ 639 (1960)
T ss_pred EcChhhcCccccchHHHHHHHCC-CcEE-EeecccccCcc-eeeeccCchHHHHHHHHHHHhcccccCceEEEcCCcHHH
Confidence 7665 21 13333333321 1211 11110001111 0111111222222 233333333223 589999999988
Q ss_pred HHHHHHHHHc----C------CeEEEEcC-CCCHHHHHHHHHHHhcCC
Q 011446 371 ELLAKKITEL----G------YSCFYIHA-KMLQDHRNRVFHDFRNGA 407 (485)
Q Consensus 371 ~~l~~~L~~~----~------~~~~~~h~-~~~~~~r~~i~~~f~~g~ 407 (485)
..|...++.. | +....+.. .|+..++.. -..|+.|.
T Consensus 640 ~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~-~~~Yr~Gd 686 (1960)
T TIGR02760 640 QDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRN-AAHYKQGM 686 (1960)
T ss_pred HHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhh-HhhcCCCC
Confidence 8887776542 2 23333332 466666653 36666664
No 214
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.18 E-value=0.0019 Score=63.70 Aligned_cols=71 Identities=15% Similarity=0.058 Sum_probs=42.6
Q ss_pred CCCCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHhhhhccCCc-eEEEEEcCcHHHHHHHHHHHHH
Q 011446 140 FERPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNV-IQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~-~~~lil~P~~~la~q~~~~~~~ 210 (485)
|...+|-|-+-+..+. .+.++++.+|+|+|||.+.+..++.+....+.. .+.++.+-|..-++.....++.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 4556777766554433 346799999999999998766666655444422 2455554444333333444443
No 215
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.16 E-value=0.0014 Score=64.76 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHH------hcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHH
Q 011446 142 RPSPIQEESIPIA------LTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT 204 (485)
Q Consensus 142 ~~~~~Q~~~i~~i------~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (485)
++++-|+.++..+ ..+..++|.|+-|+|||..+- .+...+.. .+..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~--~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS--RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc--ccceEEEecchHHHHHhc
Confidence 3677899998888 566789999999999998632 22333332 234788899997766444
No 216
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.015 Score=58.96 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=64.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHH
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM 233 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 233 (485)
.++.+.++||||+|||+.....+...... +.+.++.++. +.+..+ .+.++.+....++.+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~a----------- 413 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHEA----------- 413 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccH---HHHHHHhhcccCceeEec-----------
Confidence 34668889999999998865444332222 1122444443 334333 233444444444333221
Q ss_pred HhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC-CHHHHHHHHHhCCCCCcEEEEecccc-hHHHHHH
Q 011446 234 RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-FQPSVEQLIRFLPANRQILMFSATFP-VTVKDFK 311 (485)
Q Consensus 234 ~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SATl~-~~~~~~~ 311 (485)
.+++.+...+.. +.++++|+||.+-+..... ....+..+.. ......+++++++.. .+..+.+
T Consensus 414 ----------~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss~~Dl~eii 478 (559)
T PRK12727 414 ----------DSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAHFSDLDEVV 478 (559)
T ss_pred ----------CcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCChhHHHHHH
Confidence 122334444432 4568999999997642211 1112222222 223455788888864 2344444
Q ss_pred HHh
Q 011446 312 DKY 314 (485)
Q Consensus 312 ~~~ 314 (485)
..|
T Consensus 479 ~~f 481 (559)
T PRK12727 479 RRF 481 (559)
T ss_pred HHH
Confidence 443
No 217
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.0047 Score=66.81 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=26.5
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
..+++++||||+|+|.. .-.+.+.+++...+.++.+|+++
T Consensus 118 ~~~~KV~IIDEad~lt~-~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTP-QGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCH-HHHHHHHHHHhCCCCCeEEEEEe
Confidence 35789999999998854 23334555555555666666655
No 218
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.08 E-value=0.0006 Score=59.07 Aligned_cols=123 Identities=22% Similarity=0.282 Sum_probs=52.8
Q ss_pred EEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCe
Q 011446 161 LARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVH 240 (485)
Q Consensus 161 ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~ 240 (485)
|+.|+-|-|||.+.-+.+ ..+...+. .+++|.+|+.+-+..+++.+..-....+.+....... ............
T Consensus 1 VltA~RGRGKSa~lGl~~-a~l~~~~~-~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAA-AALIQKGK-IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCC-CCSSS------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHH-HHHHHhcC-ceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccccce
Confidence 578999999998744433 33333222 4799999999988777776655544444332000000 000011113557
Q ss_pred EEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEeccc
Q 011446 241 LLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (485)
Q Consensus 241 Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl 303 (485)
|-+..|+.+... ....+++|||||=.+ -.+.+..++... . .++||.|+
T Consensus 76 i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~---~-~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRF---P-RVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS---S-EEEEEEEB
T ss_pred EEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhC---C-EEEEEeec
Confidence 778888766332 224589999999764 345555554333 2 46777776
No 219
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.0028 Score=63.69 Aligned_cols=19 Identities=32% Similarity=0.266 Sum_probs=16.0
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
++++||.|+|||+++-+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999866543
No 220
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.03 E-value=0.0015 Score=59.89 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=65.1
Q ss_pred CCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECC-CChHHHHHHhc-CCCeEEEEcchHHHHhhhcCccccCCc
Q 011446 186 NNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGG-TSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDC 263 (485)
Q Consensus 186 ~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~ 263 (485)
...+.+||||.+-.-|.++.+.++.+... ++.|.-+..- ....++...+. ...+|.|+||+++..++..+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 34578999999888887888777776311 2334333333 25666666665 478999999999999999999999999
Q ss_pred ceEEeecccc
Q 011446 264 SMLVMDEADK 273 (485)
Q Consensus 264 ~~iViDEah~ 273 (485)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998664
No 221
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.0063 Score=64.06 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=23.9
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
.+++++||||+|+|.... .+.+.+++..-+.+..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 467899999999885433 233444455444555555544
No 222
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.98 E-value=0.0013 Score=60.98 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=30.4
Q ss_pred cccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEeccc
Q 011446 258 CILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (485)
Q Consensus 258 ~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl 303 (485)
.....+++||+||||.|.. +-...+.+.+........+++.+.-+
T Consensus 125 ~~~~~fKiiIlDEcdsmts-daq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTS-DAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhH-HHHHHHHHHHhccccceEEEEEcCCh
Confidence 3456789999999998743 34455666666666666677766554
No 223
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.008 Score=62.37 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=24.5
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecc
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 302 (485)
..+++++||||+|+|....+ +.+.+.+..-+.++.+|+.|--
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCC
Confidence 34688999999998854332 2233333333445665665543
No 224
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.93 E-value=0.012 Score=58.96 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=69.3
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 235 (485)
..++++|++|+|||+...-.+. ++...+ .++++++ +.+..+ .+.++.++...++.+.......+..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~~g--~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d~~------ 163 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKKKG--LKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKDAV------ 163 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHHcC--CeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccCHH------
Confidence 3488899999999988654443 333332 2444444 334433 3334444444444432211111100
Q ss_pred cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHh
Q 011446 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (485)
Q Consensus 236 ~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (485)
..+...+.. +...++||||.+-+... ......+..+.....++.-++.++||...+..+.+..+
T Consensus 164 -----------~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 164 -----------EIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred -----------HHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 111122222 22348899999965432 22334455566666677778888988876655555554
Q ss_pred c
Q 011446 315 L 315 (485)
Q Consensus 315 ~ 315 (485)
.
T Consensus 229 ~ 229 (437)
T PRK00771 229 H 229 (437)
T ss_pred H
Confidence 3
No 225
>PRK08116 hypothetical protein; Validated
Probab=96.81 E-value=0.044 Score=51.57 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=27.1
Q ss_pred cCCcceEEeeccccccCCC-CHHHHHHHHHhC-CCCCcEEEEecccchHHH
Q 011446 260 LKDCSMLVMDEADKLLSPE-FQPSVEQLIRFL-PANRQILMFSATFPVTVK 308 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SATl~~~~~ 308 (485)
+.++++|||||++.-...+ ....+..++... .....+|+.|-..+.++.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 4567899999997432222 223344454433 344566666665554443
No 226
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.79 E-value=0.0084 Score=60.78 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=26.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (485)
+.+++.|++|+|||... ..+...+.....+.+++++.+ ..+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~ 183 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFA 183 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHH
Confidence 35999999999999653 334444443334447776655 3444
No 227
>PRK05642 DNA replication initiation factor; Validated
Probab=96.78 E-value=0.0038 Score=57.54 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=29.5
Q ss_pred cCCcceEEeeccccccCC-CCHHHHHHHHHhCCCCCcEEEEecccch
Q 011446 260 LKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFPV 305 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SATl~~ 305 (485)
+.+++++|+|++|.+... .+...+..++..+....+.+++|+|.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 345689999999976543 3445566666665554445667776543
No 228
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.78 E-value=0.0025 Score=59.33 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=52.3
Q ss_pred HHHHHHhcCCccEEEEccccccCCCCCCC--------CEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 398 RVFHDFRNGACRNLVCTDLFTRGIDIQAV--------NVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 398 ~i~~~f~~g~~~vlvaT~~~~~Gidi~~v--------~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
...+.|.+|+..|+|.|+++++||.+.+- ++-|...+|+|....+|..||+.|+|+...|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P 119 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAP 119 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCC
Confidence 45678999999999999999999988642 3566888999999999999999999998776
No 229
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.77 E-value=0.008 Score=50.43 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCC------eEEEEcCCCCHHHHHHHHHHHhcCCc-cEEEEccccccCCCCCC--CCEEEEcCCCC
Q 011446 370 VELLAKKITELGY------SCFYIHAKMLQDHRNRVFHDFRNGAC-RNLVCTDLFTRGIDIQA--VNVVINFDFPK 436 (485)
Q Consensus 370 ~~~l~~~L~~~~~------~~~~~h~~~~~~~r~~i~~~f~~g~~-~vlvaT~~~~~Gidi~~--v~~VI~~~~p~ 436 (485)
.+.+++.+...+. ....+.-+....+...+++.|....- .||++|.-+.+|||+++ ++.||..++|-
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 4455555544432 22333434455567889999987653 79999988999999998 46788888773
No 230
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.012 Score=61.23 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=24.4
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
.+++++||||||++.... ...+.+++...+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 467899999999875433 334445555555555555544
No 231
>PRK06893 DNA replication initiation factor; Validated
Probab=96.75 E-value=0.0035 Score=57.57 Aligned_cols=47 Identities=15% Similarity=0.361 Sum_probs=29.4
Q ss_pred cCCcceEEeeccccccC-CCCHHHHHHHHHhCCC-CCcEEEEecccchH
Q 011446 260 LKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPA-NRQILMFSATFPVT 306 (485)
Q Consensus 260 l~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~-~~~~i~~SATl~~~ 306 (485)
+.+++++||||+|.+.. ..+...+..++..... +.+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 34678999999998753 2334445555554433 34567777776433
No 232
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.75 E-value=0.0019 Score=72.85 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=77.6
Q ss_pred cEEEEecChhHHHHHHHHHHHcC-CeEEEEcCCCC-----------HHHHHHHHHHHhcCCccEEEEccccccCCCCCCC
Q 011446 359 QSIIFCNSVNRVELLAKKITELG-YSCFYIHAKML-----------QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV 426 (485)
Q Consensus 359 ~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~-----------~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v 426 (485)
..++|++....+..+++.+.... ..+..+.|.+. ...+++++..|....+.+|++|.++..|+|++-+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 57999999999998888887752 23333444321 2236788999999999999999999999999999
Q ss_pred CEEEEcCCCCChHHHHHHhhhccccC
Q 011446 427 NVVINFDFPKNSETYLHRVCWIQLSF 452 (485)
Q Consensus 427 ~~VI~~~~p~s~~~~~Qr~GRagR~g 452 (485)
+.|+.++.|.....|+|+.||+-+.+
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999998853
No 233
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.017 Score=56.19 Aligned_cols=129 Identities=14% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 234 (485)
++.++++||+|+|||+...-.+... ...+ .++.+++ |.+.-+ .+.++.++...++.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l-~~~g--~~V~lItaDtyR~gA---veQLk~yae~lgvpv~~------------- 266 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQL-LKQN--RTVGFITTDTFRSGA---VEQFQGYADKLDVELIV------------- 266 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHcC--CeEEEEeCCccCccH---HHHHHHHhhcCCCCEEe-------------
Confidence 4558899999999998865544433 2222 2444443 555433 33445555544543322
Q ss_pred hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-CCCHHHHHHHHHhCCCCCcEEEEecccch-HHHHHHH
Q 011446 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPV-TVKDFKD 312 (485)
Q Consensus 235 ~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~-~~~~~~~ 312 (485)
..+|..+...+... ....++++|+||=+=+.-. ......+..+.....++.-++.+|||... ++.+...
T Consensus 267 --------~~dp~dL~~al~~l-~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~ 337 (407)
T PRK12726 267 --------ATSPAELEEAVQYM-TYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred --------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHH
Confidence 12333343333221 1124578888888765421 12333444445555555546677876543 3444443
Q ss_pred H
Q 011446 313 K 313 (485)
Q Consensus 313 ~ 313 (485)
.
T Consensus 338 ~ 338 (407)
T PRK12726 338 K 338 (407)
T ss_pred h
Confidence 3
No 234
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.70 E-value=0.01 Score=59.03 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhH
Q 011446 144 SPIQEESIPIALTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 144 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~ 175 (485)
.......+..+..++++++.|++|+|||+.+.
T Consensus 181 e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 181 ETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 34455666677788999999999999998754
No 235
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.013 Score=62.89 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=15.6
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
.|++||.|+|||+++-+.+
T Consensus 41 yLFtGPpGtGKTTLARiLA 59 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFA 59 (944)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999865443
No 236
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.028 Score=59.80 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=67.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc-C-cHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV-P-TRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~-P-~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 234 (485)
++.+.++||||+|||++....+-......+.. ++.++. - .+.-+ .+.++.+++..++.+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~k-kV~lit~Dt~RigA---~eQL~~~a~~~gvpv~~------------- 247 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGAD-QLALLTTDSFRIGA---LEQLRIYGRILGVPVHA------------- 247 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCC-eEEEecCcccchHH---HHHHHHHHHhCCCCccc-------------
Confidence 34578999999999988654443332222222 444433 2 23222 34444555444443321
Q ss_pred hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC-CCHHHHHHHHHhCCCCCcEEEEecccchH-HHHHHH
Q 011446 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFPVT-VKDFKD 312 (485)
Q Consensus 235 ~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SATl~~~-~~~~~~ 312 (485)
+.+|..+.+.+.. +.++++|+||=+=+.... .....+..+.....+...++.+|||...+ +.+.+.
T Consensus 248 --------~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~ 315 (767)
T PRK14723 248 --------VKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH 315 (767)
T ss_pred --------cCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH
Confidence 2244444444442 456688999888765322 22233333333444556688889986433 344445
Q ss_pred Hh
Q 011446 313 KY 314 (485)
Q Consensus 313 ~~ 314 (485)
.|
T Consensus 316 ~f 317 (767)
T PRK14723 316 AY 317 (767)
T ss_pred HH
Confidence 55
No 237
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.70 E-value=0.023 Score=59.92 Aligned_cols=140 Identities=19% Similarity=0.246 Sum_probs=88.2
Q ss_pred CCcHHHHHHHHHHhcCC--CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceE
Q 011446 142 RPSPIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v 219 (485)
....-|.+.+..++..+ -+++.|.-|=|||.+.-+.+........ ..+++|+.|+.+-+..+++.+.+-....|.+-
T Consensus 214 ~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~ 292 (758)
T COG1444 214 EDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAGKGLEFLGYKR 292 (758)
T ss_pred hhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHHhHHHhCCcc
Confidence 33444445566666553 4889999999999887666533322222 45899999999999888888777776666442
Q ss_pred EEEECC-CChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEE
Q 011446 220 MVTTGG-TSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILM 298 (485)
Q Consensus 220 ~~~~g~-~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~ 298 (485)
.+.... .... ..-.+...|=|.+|.... ..-++||||||=-+ -.+.+..++...+ .++
T Consensus 293 ~v~~d~~g~~~---~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~~l~~~~~----rv~ 351 (758)
T COG1444 293 KVAPDALGEIR---EVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLHKLLRRFP----RVL 351 (758)
T ss_pred cccccccccee---eecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHHHHHhhcC----ceE
Confidence 221111 0000 000123346677776432 12589999999754 5677777777654 489
Q ss_pred Eeccc
Q 011446 299 FSATF 303 (485)
Q Consensus 299 ~SATl 303 (485)
||.|+
T Consensus 352 ~sTTI 356 (758)
T COG1444 352 FSTTI 356 (758)
T ss_pred EEeee
Confidence 99997
No 238
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.013 Score=61.40 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=15.9
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
++++||.|+|||+++.+.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999866543
No 239
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.68 E-value=0.013 Score=61.37 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=22.7
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEE
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 299 (485)
..++++||||||+|.... ...+.+.+..-+.+..+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 468899999999875433 23333344443444555554
No 240
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.021 Score=57.98 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=56.4
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCCh-HHHHHHhcC
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSL-KDDIMRLYQ 237 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~-~~~~~~~~~ 237 (485)
..+++||.|+|||+++.+.+-......+... -|- .....|..+.......+..+-+..+. .++++.
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~-----~pC-----g~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~--- 103 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTS-----DPC-----GTCHNCISIKNSNHPDVIEIDAASNTSVDDIKV--- 103 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCC-----CCc-----cccHHHHHHhccCCCCEEEEecccCCCHHHHHH---
Confidence 4899999999999986654432222111110 010 01234444444445555555443221 112221
Q ss_pred CCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 238 ~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
+...... .....+++++||||+|.+.... ...+.+.+..-++...+|+.+
T Consensus 104 -----------Iie~~~~-~P~~~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 104 -----------ILENSCY-LPISSKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred -----------HHHHHHh-ccccCCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 1111111 1224678999999999875432 223333344434445555444
No 241
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.66 E-value=0.0061 Score=66.38 Aligned_cols=145 Identities=15% Similarity=0.062 Sum_probs=86.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhc-----------cC----CceEEEEEcCcHHHHHHHHHHHHHHhccCCceEE
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQ-----------DN----NVIQVVILVPTRELALQTSQVCKELGKHLNIQVM 220 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~-----------~~----~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~ 220 (485)
.|+++++.-..|.|||.+-+...+..... .+ ..+..|||||.. +..||.+.+....... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhcccc-ceEE
Confidence 35678999999999998855444332210 11 224679999985 4567777777665544 6777
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCc--------------cc----cCCc--ceEEeeccccccCCCCH
Q 011446 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV--------------CI----LKDC--SMLVMDEADKLLSPEFQ 280 (485)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~--------------~~----l~~~--~~iViDEah~~~~~~~~ 280 (485)
...|-.+..-......-++|||++|+..|...+.... .. |-.+ =.|++|||+.+-. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 7666443322222223578999999999976443220 00 1011 1389999996533 33
Q ss_pred HHHHHHHHhCCCCCcEEEEecccch
Q 011446 281 PSVEQLIRFLPANRQILMFSATFPV 305 (485)
Q Consensus 281 ~~~~~i~~~~~~~~~~i~~SATl~~ 305 (485)
....+.+..++. .-.-++|+|+-.
T Consensus 529 S~~a~M~~rL~~-in~W~VTGTPiq 552 (1394)
T KOG0298|consen 529 SAAAEMVRRLHA-INRWCVTGTPIQ 552 (1394)
T ss_pred HHHHHHHHHhhh-hceeeecCCchh
Confidence 334444444432 335789999533
No 242
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.65 E-value=0.018 Score=58.10 Aligned_cols=151 Identities=18% Similarity=0.208 Sum_probs=71.9
Q ss_pred EEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHH-HHHhccCCceEEEEECCCChHH----HHHHhc
Q 011446 162 ARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVC-KELGKHLNIQVMVTTGGTSLKD----DIMRLY 236 (485)
Q Consensus 162 i~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~-~~~~~~~~~~v~~~~g~~~~~~----~~~~~~ 236 (485)
..+.||||||++....+|..... +.. ..|..|...........-+ ..+....-..-...+++..+.- ......
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-gyr-~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-GYR-NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-chh-hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 35789999999866656555443 333 4566665544432221111 1110000000001111111100 000122
Q ss_pred CCCeEEEEcchHHHHhhhcC---cc---ccCCcc-eEEeeccccccCC------C---CHHHHHHHH---HhCCCCCcEE
Q 011446 237 QPVHLLVGTPGRILDLSKKG---VC---ILKDCS-MLVMDEADKLLSP------E---FQPSVEQLI---RFLPANRQIL 297 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~~~~~~~---~~---~l~~~~-~iViDEah~~~~~------~---~~~~~~~i~---~~~~~~~~~i 297 (485)
....|+++|...|...+.+. .. .+.+.. +.+-||||++-.. + -...++..+ ....++--++
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~l 159 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLL 159 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceee
Confidence 46789999999887654432 11 133334 4567999987321 1 111222221 2223455678
Q ss_pred EEecccchHHHHHHHHhc
Q 011446 298 MFSATFPVTVKDFKDKYL 315 (485)
Q Consensus 298 ~~SATl~~~~~~~~~~~~ 315 (485)
.+|||.| .......+|-
T Consensus 160 ef~at~~-k~k~v~~ky~ 176 (812)
T COG3421 160 EFSATIP-KEKSVEDKYE 176 (812)
T ss_pred hhhhcCC-ccccHHHHhc
Confidence 8999998 4444555554
No 243
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.65 E-value=0.017 Score=59.44 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=25.5
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
.+++++||||||++.... ...+.+.+..-+.+..+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 467999999999875433 233445555555666666654
No 244
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.64 E-value=0.008 Score=55.07 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=16.5
Q ss_pred CCCEEEEccCCCchhHHhHH
Q 011446 157 GSDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~ 176 (485)
...+++.||+|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45699999999999987543
No 245
>PRK08727 hypothetical protein; Validated
Probab=96.64 E-value=0.0049 Score=56.79 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=26.0
Q ss_pred cCCcceEEeeccccccCCC-CHHHHHHHHHhCCC-CCcEEEEecccchH
Q 011446 260 LKDCSMLVMDEADKLLSPE-FQPSVEQLIRFLPA-NRQILMFSATFPVT 306 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SATl~~~ 306 (485)
+.++++|||||+|.+.... ....+..++..... ..++|+.|-..|..
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDG 139 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhh
Confidence 3456899999999876432 23334444444332 34455555544443
No 246
>PRK12377 putative replication protein; Provisional
Probab=96.61 E-value=0.023 Score=52.55 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=24.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQ 203 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (485)
..+++.|++|+|||..+.. +...+...+ ..+++ ++...+...
T Consensus 102 ~~l~l~G~~GtGKThLa~A-Ia~~l~~~g--~~v~~-i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAA-IGNRLLAKG--RSVIV-VTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHcC--CCeEE-EEHHHHHHH
Confidence 5699999999999976443 333333322 23333 344455433
No 247
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.60 E-value=0.026 Score=48.37 Aligned_cols=36 Identities=28% Similarity=0.175 Sum_probs=23.0
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
++|.|++|+|||+.....+..... .+..++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCc
Confidence 689999999999875544333322 233666666443
No 248
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.60 E-value=0.048 Score=50.33 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=27.0
Q ss_pred cCCcceEEeeccccccCCCCHH-HHHHHHHhC-CCCCcEEEEecccc
Q 011446 260 LKDCSMLVMDEADKLLSPEFQP-SVEQLIRFL-PANRQILMFSATFP 304 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~-~~~~i~~~~-~~~~~~i~~SATl~ 304 (485)
+.++++|||||++......+.. .+..++... .....+|+.|---+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~ 206 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNM 206 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCH
Confidence 4578999999999765555544 344455443 23455565555433
No 249
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.59 E-value=0.023 Score=65.17 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=43.7
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhH--HHHHhhhhccCCceEEEEEcCcHHHHHH
Q 011446 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAFC--IPALEKIDQDNNVIQVVILVPTRELALQ 203 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~--~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (485)
.+++-|.+++..++.. +-++|.|..|+|||+..- +-++..+.+ ..+..++.++||-..+..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-~~g~~V~glAPTgkAa~~ 899 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-SERPRVVGLGPTHRAVGE 899 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-ccCceEEEEechHHHHHH
Confidence 6899999999999966 559999999999998732 222222222 233478889999766533
No 250
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.58 E-value=0.0079 Score=50.56 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCC---eEEEEcCCCCHHHHHHHHHHHhcCCc---cEEEEccc--cccCCCCCC--CCEEEEcCCCC
Q 011446 369 RVELLAKKITELGY---SCFYIHAKMLQDHRNRVFHDFRNGAC---RNLVCTDL--FTRGIDIQA--VNVVINFDFPK 436 (485)
Q Consensus 369 ~~~~l~~~L~~~~~---~~~~~h~~~~~~~r~~i~~~f~~g~~---~vlvaT~~--~~~Gidi~~--v~~VI~~~~p~ 436 (485)
..+.+++.+.+.+. ....+.-.....+...+++.|..... .||+++.- +.+|||+++ ++.||..++|-
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34556666655432 12222222223344678888887543 68888887 999999998 56798888873
No 251
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.57 E-value=0.0089 Score=60.96 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=23.2
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
+.+++.||+|+|||..+.. +...+.....+.+++++.
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEEE
Confidence 4589999999999987443 333333332234666664
No 252
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.57 E-value=0.0065 Score=56.07 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||....
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999997644
No 253
>PHA02533 17 large terminase protein; Provisional
Probab=96.56 E-value=0.024 Score=58.54 Aligned_cols=148 Identities=14% Similarity=0.063 Sum_probs=85.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc--eE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI--QV 219 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~--~v 219 (485)
.|.|+|.+.+..+..++-.++..+=..|||++....++...... .+..+++++|+..-|..+++.++.+.+..+. ..
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 57899999998876666678888889999998765554433322 2348999999999988888877766554321 11
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCC--CCcEE
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA--NRQIL 297 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~--~~~~i 297 (485)
.... . ......+.+++.|.+.|... +...-.+..++|+||+|.+.+ +...+..+...+.. ..+++
T Consensus 138 ~i~~-~---~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r~i 204 (534)
T PHA02533 138 GIVE-W---NKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSKII 204 (534)
T ss_pred ceee-c---CccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCceEE
Confidence 1000 0 00111123455554544331 011122467899999997543 33334444333332 23455
Q ss_pred EEeccc
Q 011446 298 MFSATF 303 (485)
Q Consensus 298 ~~SATl 303 (485)
.+|++-
T Consensus 205 iiSTp~ 210 (534)
T PHA02533 205 ITSTPN 210 (534)
T ss_pred EEECCC
Confidence 555553
No 254
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.54 E-value=0.03 Score=54.28 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=27.4
Q ss_pred CcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
..++|||||+|.+........+..++...+.+..+|+.|.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4679999999987443445556666776666776666443
No 255
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.53 E-value=0.005 Score=57.04 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=40.0
Q ss_pred cCCCCcccccCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEE
Q 011446 116 ATKGNEFEDYFLKRELLMGIFEK-GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL 194 (485)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 194 (485)
+.+..+|+++++++-+.+.+... |. ++|.||||||||+. +..++.++.+.... .+|-+
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~~~GL-------------------ILVTGpTGSGKSTT-lAamId~iN~~~~~-HIlTI 160 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAESPRGL-------------------ILVTGPTGSGKSTT-LAAMIDYINKHKAK-HILTI 160 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhCCCce-------------------EEEeCCCCCcHHHH-HHHHHHHHhccCCc-ceEEe
Confidence 35566789999988776633321 33 89999999999998 66677777765433 44433
No 256
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.52 E-value=0.029 Score=65.12 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhc--cCCceEEEEEcCcHHHHH
Q 011446 141 ERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQ--DNNVIQVVILVPTRELAL 202 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~--~~~~~~~lil~P~~~la~ 202 (485)
..+++.|.+++..++.. +-++|.|..|+|||+.. -.++..+.. ...+..++.++||-..+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk 1030 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVG 1030 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHH
Confidence 36899999999999986 45899999999999873 233333321 123347888899976653
No 257
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.015 Score=60.57 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=24.4
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
..+++++||||+|.+.... ...+.+.+...+.+..+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 4578999999999885432 233334444444455555555
No 258
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.45 E-value=0.015 Score=58.25 Aligned_cols=145 Identities=14% Similarity=0.217 Sum_probs=82.5
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH-HHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcC
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE-LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~-la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 237 (485)
-.++.|..|||||.+..+-++..+.....+.+++|+-|+.. +...+...+.......++....-...... .+ ....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i-~~~~ 79 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI-KILN 79 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-EecC
Confidence 36889999999999888777776666423458888888876 66666777776666555432211111100 00 1112
Q ss_pred -CCeEEEEcc-hHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCC--CCcEEEEecccchHHHHHHHH
Q 011446 238 -PVHLLVGTP-GRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA--NRQILMFSATFPVTVKDFKDK 313 (485)
Q Consensus 238 -~~~Ili~Tp-~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~--~~~~i~~SATl~~~~~~~~~~ 313 (485)
+..|++..- +...+ + .....+.++.+|||..+... .+..++..++. ....+++|.|++....-+...
T Consensus 80 ~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w~~~~ 150 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHWVKKR 150 (396)
T ss_pred CCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccHHHHH
Confidence 345555444 22211 1 11234689999999987433 45555555542 222488888876433333344
Q ss_pred hc
Q 011446 314 YL 315 (485)
Q Consensus 314 ~~ 315 (485)
+.
T Consensus 151 f~ 152 (396)
T TIGR01547 151 FI 152 (396)
T ss_pred HH
Confidence 43
No 259
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.45 E-value=0.036 Score=55.23 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=67.5
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 236 (485)
.++++|++|+|||+...-.+.. +... +.++++++ |.|..|. .+++.++...++.+.....+.+...-..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~~--G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i~~--- 172 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQRK--GFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKIAS--- 172 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHC--CCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHHHH---
Confidence 4788999999999875544432 3222 22555554 5565553 3444444445555543333222110000
Q ss_pred CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC-CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHh
Q 011446 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (485)
+.+.. +. -..+++||||=+-++-.. .....+..+.....++.-++.++||...+....+..|
T Consensus 173 ----------~~l~~-~~-----~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 173 ----------EGVEK-FK-----KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred ----------HHHHH-HH-----hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 00111 11 135677888877654321 2334444455555566667888888765555555554
No 260
>PRK06921 hypothetical protein; Provisional
Probab=96.45 E-value=0.031 Score=52.51 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=22.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
+..+++.|++|+|||..+.. +...+... .+..++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~a-ia~~l~~~-~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA-AANELMRK-KGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHhhh-cCceEEEEE
Confidence 46699999999999976432 33333332 133555554
No 261
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.44 E-value=0.012 Score=60.33 Aligned_cols=150 Identities=14% Similarity=0.076 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhc-----C----CCEEEEccCCCchhHHhHHHHHhhh-hccCCceEEEEEcCcHHHHHHHHHHHHHHhcc
Q 011446 145 PIQEESIPIALT-----G----SDILARAKNGTGKTAAFCIPALEKI-DQDNNVIQVVILVPTRELALQTSQVCKELGKH 214 (485)
Q Consensus 145 ~~Q~~~i~~i~~-----~----~~~ii~~~TGsGKT~~~~~~~l~~l-~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~ 214 (485)
|+|...+..++. + +.+++.-+=|.|||+.....++..+ .....+..++++++++.-|..+++.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 577777776662 2 3488888999999987655544444 33344568999999999999999988888765
Q ss_pred CCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC--ccccCCcceEEeeccccccCCCCHHHHHHHHHhCCC
Q 011446 215 LNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA 292 (485)
Q Consensus 215 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~ 292 (485)
....... ... . ... .....|..-..+.+...+... ...-.+..++|+||+|..-+.+....+..-.... +
T Consensus 81 ~~~l~~~-~~~-~----~~~-~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r-~ 152 (477)
T PF03354_consen 81 SPELRKR-KKP-K----IIK-SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR-P 152 (477)
T ss_pred Chhhccc-hhh-h----hhh-hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC-C
Confidence 3211100 000 0 000 011223322222222222211 1112256899999999875543344444334443 3
Q ss_pred CCcE-EEEecc
Q 011446 293 NRQI-LMFSAT 302 (485)
Q Consensus 293 ~~~~-i~~SAT 302 (485)
+.++ ++.||.
T Consensus 153 ~pl~~~ISTag 163 (477)
T PF03354_consen 153 NPLIIIISTAG 163 (477)
T ss_pred CceEEEEeCCC
Confidence 4444 444444
No 262
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.43 E-value=0.021 Score=50.56 Aligned_cols=48 Identities=17% Similarity=0.047 Sum_probs=31.7
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
++|.|++|+|||+..+..+...+.. +.+++|++.. +...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999999866666655533 3367777643 4455555555544
No 263
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.42 E-value=0.015 Score=58.30 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEE
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL 194 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 194 (485)
.+++|.||+|+|||++.- .++..+........++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhcCCcEEEEE
Confidence 469999999999998733 344444333223355555
No 264
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.42 E-value=0.047 Score=57.17 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=57.8
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCc--eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCC-hHHHHHHh
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNV--IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTS-LKDDIMRL 235 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~--~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~-~~~~~~~~ 235 (485)
.+|+.||.|+|||+.+.+.+-......... ...+-.|- ....|+.+....+..+..+..... ..++++
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg-------~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IR-- 118 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG-------VGEHCQAIMEGRHVDVLEMDAASHTGVDDIR-- 118 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc-------ccHHHHHHhcCCCCceEEecccccCCHHHHH--
Confidence 489999999999998665443322221110 01111111 123444554444444433322111 111111
Q ss_pred cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 236 ~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
.+...+.. ...+..+++|||||+|.+.... ...+.+.+..-+.+..+|+.+
T Consensus 119 ------------eIie~~~~-~P~~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 119 ------------EIIESVRY-RPVSARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred ------------HHHHHHHh-chhcCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 12222222 2235678999999999875322 233444445555566666655
No 265
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.018 Score=60.34 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=25.1
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
+.+++++||||+|.+.... ...+.+.+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 4567899999999864322 233444555555566666655
No 266
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.014 Score=56.62 Aligned_cols=39 Identities=21% Similarity=0.055 Sum_probs=29.5
Q ss_pred CCcHHHHHHHHHHhcCC----CEEEEccCCCchhHHhHHHHHh
Q 011446 142 RPSPIQEESIPIALTGS----DILARAKNGTGKTAAFCIPALE 180 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~----~~ii~~~TGsGKT~~~~~~~l~ 180 (485)
.++|+|...+..+.... -.++.||.|.|||+.+...+-.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ 45 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAA 45 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHH
Confidence 35789999988887653 3889999999999876554433
No 267
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.035 Score=58.19 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=24.4
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
..+++++||||+|++.... ...+.+.+..-+.+..+|+.|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 4578999999999875322 333444444444555555544
No 268
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.059 Score=50.49 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=69.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEE-c-CcH-HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL-V-PTR-ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM 233 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil-~-P~~-~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 233 (485)
+..+.+.|++|+|||+.+...+... ... +.++.++ + +.+ ..+. .++.++...++.+...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l-~~~--~~~v~~i~~D~~ri~~~~----ql~~~~~~~~~~~~~~----------- 136 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF-HGK--KKTVGFITTDHSRIGTVQ----QLQDYVKTIGFEVIAV----------- 136 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HHc--CCeEEEEecCCCCHHHHH----HHHHHhhhcCceEEec-----------
Confidence 3568999999999999765444332 221 2234333 3 333 2333 3334444334333221
Q ss_pred HhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-CCCHHHHHHHHHhCCCCCcEEEEecccc-hHHHHHH
Q 011446 234 RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFP-VTVKDFK 311 (485)
Q Consensus 234 ~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~-~~~~~~~ 311 (485)
.++..+...+..- ....++++|++|-+=+... ......+..++....++..++.+|||.. .+..+.+
T Consensus 137 ----------~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 137 ----------RDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ----------CCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 1233333332210 1123689999999976532 2233344455555555555778999864 4566666
Q ss_pred HHhc
Q 011446 312 DKYL 315 (485)
Q Consensus 312 ~~~~ 315 (485)
..|-
T Consensus 206 ~~f~ 209 (270)
T PRK06731 206 TNFK 209 (270)
T ss_pred HHhC
Confidence 6654
No 269
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.37 E-value=0.015 Score=52.94 Aligned_cols=107 Identities=18% Similarity=0.254 Sum_probs=57.5
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCC
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP 238 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 238 (485)
.++|.|++|+|||-. +..+...+.....+.+++|+... +........+.. .
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------~------------ 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------G------------ 86 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT---------------T------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc---------------c------------
Confidence 389999999999974 44444444443344477776532 222221221111 0
Q ss_pred CeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC-CHHHHHHHHHhC-CCCCcEEEEecccchHH
Q 011446 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE-FQPSVEQLIRFL-PANRQILMFSATFPVTV 307 (485)
Q Consensus 239 ~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SATl~~~~ 307 (485)
....+.+ .+..+++++||++|.+.+.. ....+..++..+ ..+.++|+.|...|..+
T Consensus 87 ------~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 87 ------EIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ------SHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ------cchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 0011211 14578999999999876532 334444444443 34567777776766543
No 270
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.36 E-value=0.011 Score=55.66 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=15.9
Q ss_pred CCEEEEccCCCchhHHhHH
Q 011446 158 SDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (485)
.++++.||+|+|||+.+-.
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4589999999999987543
No 271
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.35 E-value=0.014 Score=50.38 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=28.2
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEeccc
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl 303 (485)
..++++||||||.|. ..-...+.+.+..-+.+..+|++|..+
T Consensus 101 ~~~KviiI~~ad~l~-~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT-EEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS--HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhh-HHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 568999999999873 334555666666666677766666654
No 272
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.34 E-value=0.066 Score=51.83 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=24.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (485)
+.++++.|+||+|||..+...+ ..+... +..|+++ +...+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa-~~l~~~--g~~V~y~-t~~~l~ 223 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIA-KELLDR--GKSVIYR-TADELI 223 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHH-HHHHHC--CCeEEEE-EHHHHH
Confidence 4679999999999998644333 333332 2245554 334443
No 273
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.02 Score=58.61 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=17.1
Q ss_pred CEEEEccCCCchhHHhHHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l 179 (485)
.+++.||.|+|||+++-+.+-
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999998665443
No 274
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.32 E-value=0.016 Score=58.24 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=23.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
..+++.|++|+|||.... .+...+.....+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEE
Confidence 348999999999998743 3334443333344667764
No 275
>PTZ00293 thymidine kinase; Provisional
Probab=96.30 E-value=0.017 Score=51.58 Aligned_cols=39 Identities=13% Similarity=0.024 Sum_probs=25.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
|+-.++.||++||||+-.+-.+..+... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc---CCceEEEEecc
Confidence 4447889999999998744444333332 23678888864
No 276
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.028 Score=55.97 Aligned_cols=132 Identities=14% Similarity=0.151 Sum_probs=62.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 235 (485)
.+..+.++||||+|||+.....+-......+.....++.+.+-... ..+.+..++...++.+....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~------------ 255 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIK------------ 255 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCC------------
Confidence 3456889999999999986533332222222122345555442221 12334444444454443211
Q ss_pred cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC-CCHHHHHHHHHhCCCCCcEEEEecccchH-HHHHHHH
Q 011446 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFPVT-VKDFKDK 313 (485)
Q Consensus 236 ~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SATl~~~-~~~~~~~ 313 (485)
++..+...+. .+.+.+++++|.+=+.-.. .....+..+.....+...++.+|||.... +.+....
T Consensus 256 ---------~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~ 322 (420)
T PRK14721 256 ---------DIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISA 322 (420)
T ss_pred ---------CHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 1112222222 1556788999986432111 11222222222222344578899997544 4444444
Q ss_pred h
Q 011446 314 Y 314 (485)
Q Consensus 314 ~ 314 (485)
|
T Consensus 323 f 323 (420)
T PRK14721 323 Y 323 (420)
T ss_pred h
Confidence 4
No 277
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.28 E-value=0.061 Score=50.69 Aligned_cols=133 Identities=19% Similarity=0.268 Sum_probs=68.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 235 (485)
+.++++|++|+|||+...-.+... ... +.+++++. +.|.-+. +.+..++...++.+.....+.+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~~--g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~dp~------ 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KKQ--GKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGADPA------ 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hhc--CCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCCHH------
Confidence 447788999999998765544333 222 23555554 4454442 233333333344332211111110
Q ss_pred cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-CCCHHHHHHHHHhCC------CCCcEEEEecccchHHH
Q 011446 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLP------ANRQILMFSATFPVTVK 308 (485)
Q Consensus 236 ~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~------~~~~~i~~SATl~~~~~ 308 (485)
......+.. ....++++|++|=+-++.. ......+..+....+ ++..++.++||...+..
T Consensus 141 -----------~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~ 207 (272)
T TIGR00064 141 -----------AVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL 207 (272)
T ss_pred -----------HHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH
Confidence 011111111 1134688999998876532 223344555555544 56678999999765554
Q ss_pred HHHHHhc
Q 011446 309 DFKDKYL 315 (485)
Q Consensus 309 ~~~~~~~ 315 (485)
..+..+.
T Consensus 208 ~~~~~f~ 214 (272)
T TIGR00064 208 EQAKVFN 214 (272)
T ss_pred HHHHHHH
Confidence 5444444
No 278
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.27 E-value=0.033 Score=56.38 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=17.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l 179 (485)
++.+.++||||+|||++....+-
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45588999999999998654443
No 279
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.25 E-value=0.0091 Score=63.89 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCcHHHHHHHHHHHHHHh
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELG 212 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~ 212 (485)
.+++-|.+++... ...++|.|..|||||.+.+.-+...+...+ ...++|+++-|+..|..+.+.+....
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4788999998753 466889999999999985554444443322 34489999999999988877776654
No 280
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.011 Score=57.19 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
.+.|++||+|+|||+.+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 359999999999998754
No 281
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.21 E-value=0.021 Score=60.94 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=50.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCcHHHHHHHHHHHHHHhc
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELGK 213 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~~ 213 (485)
..+++-|++++... ..+++|.|..|||||.+.+--+...+.... .+.++++++.++..|..+.+.+.+...
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 46899999998643 356899999999999985443332232222 334899999999999888777666543
No 282
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.049 Score=53.82 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.2
Q ss_pred EEEEccCCCchhHHhHHH
Q 011446 160 ILARAKNGTGKTAAFCIP 177 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~ 177 (485)
+++.||.|+|||+.+...
T Consensus 41 ~L~~Gp~G~GKTtla~~l 58 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLL 58 (363)
T ss_pred EEEecCCCCCHHHHHHHH
Confidence 689999999999986543
No 283
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.18 E-value=0.025 Score=51.94 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=25.1
Q ss_pred CcceEEeeccccccCCCCHHHHHHHHHhCCCCCc-EEEEecccc
Q 011446 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ-ILMFSATFP 304 (485)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~-~i~~SATl~ 304 (485)
..++|||||+|.+.. .....+..++........ +++++++.+
T Consensus 90 ~~~~liiDdi~~l~~-~~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDD-AQQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCc-hHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 467899999998643 333444455544333333 467777754
No 284
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.03 Score=58.37 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=17.0
Q ss_pred CEEEEccCCCchhHHhHHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l 179 (485)
.+|+.||.|+|||+++.+.+-
T Consensus 40 a~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 378899999999998765443
No 285
>PF13173 AAA_14: AAA domain
Probab=96.17 E-value=0.042 Score=45.34 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=26.0
Q ss_pred CcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecc
Q 011446 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 302 (485)
.-.+|+|||+|.+- ++...++.+.... ++.++++++-.
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccc
Confidence 45789999999874 5777777777754 45665554443
No 286
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.15 E-value=0.013 Score=61.83 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=37.7
Q ss_pred cceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecccc
Q 011446 263 CSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFP 304 (485)
Q Consensus 263 ~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~ 304 (485)
.-++|+|+.|++.+......+..+++..|++..+++.|-+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 358999999999998888999999999999999999998854
No 287
>PLN03025 replication factor C subunit; Provisional
Probab=96.14 E-value=0.057 Score=52.34 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=23.9
Q ss_pred CcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecc
Q 011446 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 302 (485)
..++|||||||.+... -...+...+...+....+++ +++
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il-~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFAL-ACN 137 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEE-EeC
Confidence 5789999999987532 24445555555444555444 444
No 288
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.053 Score=56.19 Aligned_cols=40 Identities=10% Similarity=0.172 Sum_probs=24.3
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
..+++++||||+|.+.... ...+.+.+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 4567899999999875422 223334444444556666655
No 289
>PRK10867 signal recognition particle protein; Provisional
Probab=96.08 E-value=0.077 Score=53.22 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=32.3
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEE
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVM 220 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~ 220 (485)
.++++|++|+|||+...-.+.......+ .++++++ +.|..+. +.++.++...++.+.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRPAAI---EQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccchHHH---HHHHHHHhhcCCeEE
Confidence 3788999999999986554443332212 2444444 5665553 333444444555544
No 290
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.034 Score=58.06 Aligned_cols=19 Identities=47% Similarity=0.412 Sum_probs=16.0
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
.|++||.|+|||.++-..+
T Consensus 41 yLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999876554
No 291
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.99 E-value=0.047 Score=53.38 Aligned_cols=41 Identities=12% Similarity=0.296 Sum_probs=25.6
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
.....+|||||+|.+.. .....+..++...+....+|+++.
T Consensus 123 ~~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 123 SADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEeC
Confidence 34567999999997642 234445556665556666555443
No 292
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.084 Score=52.30 Aligned_cols=125 Identities=13% Similarity=0.131 Sum_probs=65.2
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 236 (485)
.++++||+|+|||+.....+.......+ .++.++. +.+..+.. .++.++...++.+...
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~~-------------- 285 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYPV-------------- 285 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHHH---HHHHHHHhcCCCeeeh--------------
Confidence 3788999999999987665544332222 2444443 54555433 3444444444432110
Q ss_pred CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-CCCHHHHHHHHHhCC---CCCcEEEEecccch-HHHHHH
Q 011446 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLP---ANRQILMFSATFPV-TVKDFK 311 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~---~~~~~i~~SATl~~-~~~~~~ 311 (485)
..+..+...+. -..+++|+||=+-+... ..-...+..++.... +...++.+|||... ++....
T Consensus 286 -------~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 286 -------KDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred -------HHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 00122333232 14678999997765422 223333444444432 23457889999876 444444
Q ss_pred HHh
Q 011446 312 DKY 314 (485)
Q Consensus 312 ~~~ 314 (485)
..|
T Consensus 354 ~~f 356 (432)
T PRK12724 354 KAY 356 (432)
T ss_pred HHh
Confidence 444
No 293
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.98 E-value=0.066 Score=57.32 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=16.1
Q ss_pred EEEEccCCCchhHHhHHHHHhhh
Q 011446 160 ILARAKNGTGKTAAFCIPALEKI 182 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l 182 (485)
++|.|+||+|||++.-. ++..+
T Consensus 784 LYIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 46999999999998433 44444
No 294
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.96 E-value=0.038 Score=52.64 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+|++||+|+|||+.+-
T Consensus 164 SmIlWGppG~GKTtlAr 180 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLAR 180 (554)
T ss_pred ceEEecCCCCchHHHHH
Confidence 59999999999997643
No 295
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.95 E-value=0.057 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=17.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l 179 (485)
++.++++||||+|||+.....+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999988654443
No 296
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.036 Score=56.45 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.4
Q ss_pred EEEEccCCCchhHHhHHH
Q 011446 160 ILARAKNGTGKTAAFCIP 177 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~ 177 (485)
++++||+|+|||+.+-+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 799999999999986544
No 297
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.056 Score=53.17 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=25.2
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecc
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 302 (485)
.....+|||||+|.|- ..-...+.+.+..-+.+.-+|++|..
T Consensus 139 ~~~~kVviIDead~m~-~~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMN-ANAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcC-HHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 4567899999999873 23333444445544445555555544
No 298
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.93 E-value=0.26 Score=42.96 Aligned_cols=129 Identities=18% Similarity=0.278 Sum_probs=61.4
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEE-c-CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcC
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL-V-PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil-~-P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 237 (485)
+++.|++|+|||+.....+.. +... +.+++++ + +.+.-. .+.+..+....++.+.......+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~-~~~~--g~~v~~i~~D~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~---------- 66 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY-LKKK--GKKVLLVAADTYRPAA---IEQLRVLGEQVGVPVFEEGEGKD---------- 66 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC--CCcEEEEEcCCCChHH---HHHHHHhcccCCeEEEecCCCCC----------
Confidence 678999999999985544332 3222 2245444 3 333222 23333444444444332111111
Q ss_pred CCeEEEEcchHHH-HhhhcCccccCCcceEEeecccccc-CCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHh
Q 011446 238 PVHLLVGTPGRIL-DLSKKGVCILKDCSMLVMDEADKLL-SPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (485)
Q Consensus 238 ~~~Ili~Tp~~l~-~~~~~~~~~l~~~~~iViDEah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (485)
+..+. ..+.. .....+++||+|...... +......+..+......+.-++.++|+-..+..+....+
T Consensus 67 --------~~~~~~~~~~~--~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 67 --------PVSIAKRAIEH--AREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred --------HHHHHHHHHHH--HHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 11111 11111 112357889999988642 122333343444434455556777776555544544444
No 299
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.92 E-value=0.1 Score=54.38 Aligned_cols=147 Identities=12% Similarity=0.115 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHh---cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCC----
Q 011446 144 SPIQEESIPIAL---TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN---- 216 (485)
Q Consensus 144 ~~~Q~~~i~~i~---~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~---- 216 (485)
.|.=.+-|+.++ ..+-.++.+|=|.|||.+..+.+...+.. .+.+++|++|...-+.++++.+....+..+
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 444444444443 44568899999999998865444433321 245899999999999888887777766332
Q ss_pred ----ceEEEEECCCCh-H--HHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHh
Q 011446 217 ----IQVMVTTGGTSL-K--DDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF 289 (485)
Q Consensus 217 ----~~v~~~~g~~~~-~--~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~ 289 (485)
-.+....|+... . ..-........|.+++.. .+...-..++++|+|||+.+-. ..+..++-.
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~ 317 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GALLSVLPL 317 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HHHHHHHHH
Confidence 011212222110 0 000000001233333322 1111123578999999997633 344445444
Q ss_pred CC-CCCcEEEEeccc
Q 011446 290 LP-ANRQILMFSATF 303 (485)
Q Consensus 290 ~~-~~~~~i~~SATl 303 (485)
+. .+.+++++|.+-
T Consensus 318 l~~~~~k~IiISS~~ 332 (752)
T PHA03333 318 MAVKGTKQIHISSPV 332 (752)
T ss_pred HccCCCceEEEeCCC
Confidence 43 356677777764
No 300
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.91 E-value=0.018 Score=59.98 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=74.7
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHH-HHHHHhccCCce
Q 011446 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ-VCKELGKHLNIQ 218 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~-~~~~~~~~~~~~ 218 (485)
..+|+|.+.++++... +.+++..++-+|||.+.+..+...+... ...++++.||..+|..... .+..+......-
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~--P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD--PGPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC--CCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 5689999999988876 4699999999999997544443333333 2478999999999988763 555555444211
Q ss_pred EEEEEC-----CCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeecccccc
Q 011446 219 VMVTTG-----GTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL 275 (485)
Q Consensus 219 v~~~~g-----~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~ 275 (485)
-..+.. +.+.. ....+ .+..+.++....-. .+.-..+.++++||++.+-
T Consensus 94 ~~~~~~~~~~~~~~t~-~~k~f-~gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTI-LYKRF-PGGFLYLVGANSPS------NLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCchhhcccCCch-hheec-CCCEEEEEeCCCCc------ccccCCcCEEEEechhhcc
Confidence 111111 11111 11111 24445444333211 1123457899999999874
No 301
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.90 E-value=0.069 Score=54.12 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=24.5
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcC
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (485)
+.+++.||+|+|||..+. .+...+.....+.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 359999999999998743 33333433333446777753
No 302
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.87 E-value=0.037 Score=53.18 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHHHHhc----CC---CEEEEccCCCchhHHhHHHHH
Q 011446 141 ERPSPIQEESIPIALT----GS---DILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~----~~---~~ii~~~TGsGKT~~~~~~~l 179 (485)
..++|+|..++..+.. ++ -.++.||.|.||++.+...+-
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~ 48 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAE 48 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH
Confidence 4678999988887663 33 388999999999987654443
No 303
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.85 E-value=0.032 Score=53.65 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=40.8
Q ss_pred HHHcCCCCCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 135 IFEKGFERPSPIQEESIPIAL-TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 135 l~~~~~~~~~~~Q~~~i~~i~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
+.+.|. +++.|.+.+..+. .+.+++|+|+||||||+.. -.++..+.......+++++=.+.+|
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 444443 5677777776555 4567999999999999873 4455554332333477776666665
No 304
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.84 E-value=0.023 Score=58.89 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=28.5
Q ss_pred cCCcceEEeeccccccCCC-CHHHHHHHHHhCCC-CCcEEEEecccchHH
Q 011446 260 LKDCSMLVMDEADKLLSPE-FQPSVEQLIRFLPA-NRQILMFSATFPVTV 307 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SATl~~~~ 307 (485)
+.++++|||||+|.+.... ....+..++..+.. +.++|+.|-..|.++
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 4467999999999876543 23444455544433 456665555444443
No 305
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.094 Score=52.50 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=16.0
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
+|++||.|+|||+++...+
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999866543
No 306
>PRK04195 replication factor C large subunit; Provisional
Probab=95.80 E-value=0.11 Score=53.43 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
.+.+++.||+|+|||+.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999998744
No 307
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.79 E-value=0.035 Score=63.59 Aligned_cols=123 Identities=19% Similarity=0.118 Sum_probs=73.3
Q ss_pred CcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEE
Q 011446 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVT 222 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~ 222 (485)
+++-|.++|. ..+++++|.|..|||||.+.+--++..+..+....+++++|=|+..|..+.+.+.+.....-..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~---- 75 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ---- 75 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc----
Confidence 5788999998 3578899999999999999766666655543333479999999998877766555443221000
Q ss_pred ECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccC--CcceEEeecccc
Q 011446 223 TGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILK--DCSMLVMDEADK 273 (485)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~--~~~~iViDEah~ 273 (485)
......-...+..-...-|+|.+.|...+-+.....- +..+=|.||...
T Consensus 76 --~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 --EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred --CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0000111112222235668999888653332211111 124556887764
No 308
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.77 E-value=0.02 Score=62.00 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCcHHHHHHHHHHHHHHhc
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELGK 213 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~~ 213 (485)
..+++-|.+++... ...++|.|..|||||.+...-+...+...+ ...++|+++-|+..|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35889999998753 467999999999999985544443333322 345899999999999888887777654
No 309
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.077 Score=54.83 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=24.8
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
..+..++||||||++... -...+.+.+..-+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 456789999999987432 2334444555444555555555
No 310
>PRK09183 transposase/IS protein; Provisional
Probab=95.75 E-value=0.06 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=19.8
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHH
Q 011446 154 ALTGSDILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~~~~~~ 178 (485)
+..+.++++.||+|+|||..+...+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~ 123 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALG 123 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 4567889999999999998755443
No 311
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.74 E-value=0.024 Score=60.99 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=50.4
Q ss_pred CcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCcHHHHHHHHHHHHHHh
Q 011446 143 PSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELG 212 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~ 212 (485)
+++-|.+++.. ...+++|.|..|||||.+.+.-+...+...+ ...++++++.|+..+..+.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998875 3467999999999999985555544443322 34578999999999988877776554
No 312
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.73 E-value=0.033 Score=50.01 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
+++++||+|+|||+.+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 59999999999998643
No 313
>CHL00181 cbbX CbbX; Provisional
Probab=95.73 E-value=0.04 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=16.8
Q ss_pred CCCEEEEccCCCchhHHhHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIP 177 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~ 177 (485)
+.++++.||+|+|||+.+-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 345899999999999986543
No 314
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.062 Score=55.78 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=16.5
Q ss_pred CEEEEccCCCchhHHhHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~ 178 (485)
.+|+.||.|+|||+.+...+
T Consensus 40 A~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999999866544
No 315
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.70 E-value=0.041 Score=55.85 Aligned_cols=84 Identities=21% Similarity=0.150 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCCCCcH----HHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhcc---CCceEEEEEcCcHHH
Q 011446 130 ELLMGIFEKGFERPSP----IQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILVPTREL 200 (485)
Q Consensus 130 ~l~~~l~~~~~~~~~~----~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P~~~l 200 (485)
-|...|.++--.+++. +|.+-=+.|... ..+||.|..|||||++++--+--.+... -.+..+||+.|.+.+
T Consensus 193 vL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vF 272 (747)
T COG3973 193 VLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVF 272 (747)
T ss_pred HHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHH
Confidence 4455666654445543 355544445543 4589999999999998643322222221 123359999999999
Q ss_pred HHHHHHHHHHHhc
Q 011446 201 ALQTSQVCKELGK 213 (485)
Q Consensus 201 a~q~~~~~~~~~~ 213 (485)
..-+.+++-+++.
T Consensus 273 leYis~VLPeLGe 285 (747)
T COG3973 273 LEYISRVLPELGE 285 (747)
T ss_pred HHHHHHhchhhcc
Confidence 8888888877764
No 316
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.69 E-value=0.18 Score=43.05 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=75.1
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH---HHHHHHHHHHHHhccCCceEEEEECC-----CChHHH
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE---LALQTSQVCKELGKHLNIQVMVTTGG-----TSLKDD 231 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~---la~q~~~~~~~~~~~~~~~v~~~~g~-----~~~~~~ 231 (485)
+.|..++|.|||.+++.-++.....+ .+++++.=.+. -.+ ...++++ .++.+...-.+ .+..+.
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g---~~v~~vQFlKg~~~~gE--~~~l~~l---~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHG---YRVGVVQFLKGGWKYGE--LKALERL---PNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEEeCCCCccCH--HHHHHhC---CCcEEEECCCCCccCCCChHHH
Confidence 56778889999999887777776643 36666431111 110 1223333 13333221111 111111
Q ss_pred HHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC--HHHHHHHHHhCCCCCcEEEEecccchHHHH
Q 011446 232 IMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF--QPSVEQLIRFLPANRQILMFSATFPVTVKD 309 (485)
Q Consensus 232 ~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SATl~~~~~~ 309 (485)
.... ...+..... ......+++||+||+=..++.++ ...+..+++..+...-+|+++-.+|+.+.+
T Consensus 77 ~~~a-----------~~~~~~a~~-~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e 144 (159)
T cd00561 77 IAAA-----------AEGWAFAKE-AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIE 144 (159)
T ss_pred HHHH-----------HHHHHHHHH-HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 1000 111221221 22245789999999987765543 456777888888888889998888888777
Q ss_pred HHHH
Q 011446 310 FKDK 313 (485)
Q Consensus 310 ~~~~ 313 (485)
.++.
T Consensus 145 ~AD~ 148 (159)
T cd00561 145 AADL 148 (159)
T ss_pred hCce
Confidence 6553
No 317
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.032 Score=57.95 Aligned_cols=141 Identities=18% Similarity=0.232 Sum_probs=75.8
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEE-EcCcHHHHHHHHHHHHHHhccCCceEEEE---------E
Q 011446 154 ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVI-LVPTRELALQTSQVCKELGKHLNIQVMVT---------T 223 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~li-l~P~~~la~q~~~~~~~~~~~~~~~v~~~---------~ 223 (485)
+..|+.+-++||.|+|||+++. ++.++++-..| ++++ -+|.+.+- ..++++.....+-.-..+ +
T Consensus 491 i~pGe~vALVGPSGsGKSTias--LL~rfY~PtsG-~IllDG~~i~~~~---~~~lr~~Ig~V~QEPvLFs~sI~eNI~Y 564 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIAS--LLLRFYDPTSG-RILLDGVPISDIN---HKYLRRKIGLVGQEPVLFSGSIRENIAY 564 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHH--HHHHhcCCCCC-eEEECCeehhhcC---HHHHHHHeeeeeccceeecccHHHHHhc
Confidence 3457889999999999999855 56666654333 4333 34665553 334443332222222221 1
Q ss_pred CCCCh--------------HHHHHHhcCCCeEEEEcchHHHHhhhc-----CccccCCcceEEeeccccccCCCCHHHHH
Q 011446 224 GGTSL--------------KDDIMRLYQPVHLLVGTPGRILDLSKK-----GVCILKDCSMLVMDEADKLLSPEFQPSVE 284 (485)
Q Consensus 224 g~~~~--------------~~~~~~~~~~~~Ili~Tp~~l~~~~~~-----~~~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (485)
|-.+. .+.+..+.++.+-.|+.-|..+.==++ ....+++-.++|+|||-..++..-...++
T Consensus 565 G~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq 644 (716)
T KOG0058|consen 565 GLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQ 644 (716)
T ss_pred CCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHH
Confidence 11111 111222233444444444432210000 01225677899999999888877777788
Q ss_pred HHHHhCCCCCcEEEEec
Q 011446 285 QLIRFLPANRQILMFSA 301 (485)
Q Consensus 285 ~i~~~~~~~~~~i~~SA 301 (485)
..+..+..++ ++++=|
T Consensus 645 ~aL~~~~~~r-TVlvIA 660 (716)
T KOG0058|consen 645 EALDRLMQGR-TVLVIA 660 (716)
T ss_pred HHHHHhhcCC-eEEEEe
Confidence 8887776664 444433
No 318
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.66 E-value=0.026 Score=55.39 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=33.7
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEE
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL 194 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 194 (485)
++.++++++.+++.+.. .+..++|+||||||||+. +..++.++.......+++.+
T Consensus 131 ~l~~lgl~~~~~~~l~~------------------~~GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 131 DLKQMGIEPDLFNSLLP------------------AAGLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred CHHHcCCCHHHHHHHHh------------------cCCEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEE
Confidence 56667777665444321 233489999999999987 34456665443223355544
No 319
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.66 E-value=0.15 Score=51.12 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=32.1
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.++++|++|+|||+...-.+.......+ .+++++. +.|..+. +.+..++...++.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEeccccchHHH---HHHHHHHHhcCCceEe
Confidence 4888999999999986554444222222 2444444 4555443 2333444444555443
No 320
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.66 E-value=0.077 Score=54.57 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=25.8
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
...+.++||||||++.. +-...+.+.+..-++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~-~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK-EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCH-HHHHHHHHHHhhcCCceEEEEEE
Confidence 45789999999998743 22334445555555666666655
No 321
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.66 E-value=0.13 Score=61.43 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=43.7
Q ss_pred CCCcHHHHHHHHHHhcCC--CEEEEccCCCchhHHhH---HHHHhhhhccCCceEEEEEcCcHHHHHH
Q 011446 141 ERPSPIQEESIPIALTGS--DILARAKNGTGKTAAFC---IPALEKIDQDNNVIQVVILVPTRELALQ 203 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~--~~ii~~~TGsGKT~~~~---~~~l~~l~~~~~~~~~lil~P~~~la~q 203 (485)
..+++.|.+++..++.+. -++|.|..|+|||+... -++.+.+.. .+..++.++||-..+..
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~ 1083 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGE 1083 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHH
Confidence 368999999999998764 47889999999998751 223333332 23478888999766533
No 322
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.66 E-value=0.023 Score=61.57 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCcHHHHHHHHHHHHHHhc
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELGK 213 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~~ 213 (485)
.+++-|.+++... ...++|.|..|||||.+...-+...+...+ ...++|+++-|+..|..+.+.+.++..
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999998753 457999999999999985444433333222 334899999999999888887777653
No 323
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.64 E-value=0.017 Score=51.57 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=22.6
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEE
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 297 (485)
.+.+.||+||||.|-. +-...+++.........++.
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFa 147 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFA 147 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhh
Confidence 4568999999998743 44555555555544444433
No 324
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.63 E-value=0.09 Score=46.59 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=15.9
Q ss_pred CEEEEccCCCchhHHhHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~ 178 (485)
.+++.||.|+|||..+...+
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~ 35 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALA 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38899999999998755443
No 325
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.63 E-value=0.05 Score=58.49 Aligned_cols=73 Identities=12% Similarity=0.246 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcC-----CeEEE-EcCCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 011446 345 VHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG-----YSCFY-IHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 417 (485)
Q Consensus 345 ~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-----~~~~~-~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~ 417 (485)
...+..++-....+++++.+||...+.+.++.|.+.. ..+.. ||+.|+..+++.++++|.+|..+|||+|+.+
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 4455566666666899999999999999999998752 33333 9999999999999999999999999999975
No 326
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.63 E-value=0.048 Score=44.87 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=13.2
Q ss_pred EEEEccCCCchhHHh
Q 011446 160 ILARAKNGTGKTAAF 174 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (485)
+++.||+|+|||+.+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999873
No 327
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.03 Score=57.57 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.2
Q ss_pred EEEEccCCCchhHHhHHH
Q 011446 160 ILARAKNGTGKTAAFCIP 177 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~ 177 (485)
+++.||.|+|||+++...
T Consensus 39 ~Lf~GppGtGKTTlA~~l 56 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLI 56 (504)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 599999999999986543
No 328
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.62 E-value=0.083 Score=49.22 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=31.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHH
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ 206 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~ 206 (485)
.+.++++.|++|+|||..+...+...+ .. + .-++.+++.+++.++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g-~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA--G-ISVLFITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc--C-CeEEEEEHHHHHHHHHH
Confidence 567899999999999987554444444 32 3 33556666677654444
No 329
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.61 E-value=0.11 Score=52.57 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCcceEEeeccccccCCC-CHHHHHHHHHhC-CCCCcEEEEecccchHHHHH
Q 011446 261 KDCSMLVMDEADKLLSPE-FQPSVEQLIRFL-PANRQILMFSATFPVTVKDF 310 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SATl~~~~~~~ 310 (485)
.++++++|||+|.+.... ....+..++..+ ..+.++|+.|-+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999876532 233444444433 23456555555555554433
No 330
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.59 E-value=0.03 Score=52.61 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=16.3
Q ss_pred CCEEEEccCCCchhHHhHHH
Q 011446 158 SDILARAKNGTGKTAAFCIP 177 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~ 177 (485)
.+++|+|+|+.|||...--+
T Consensus 62 p~lLivG~snnGKT~Ii~rF 81 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERF 81 (302)
T ss_pred CceEEecCCCCcHHHHHHHH
Confidence 46999999999999974433
No 331
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.09 Score=45.89 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=48.7
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCC
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP 238 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 238 (485)
-.++.||+.||||.-.+.-+..+.. .+.++++..|...-- .+...+...-|.. .
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~---~g~~v~vfkp~iD~R-------------~~~~~V~Sr~G~~----------~ 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKE---AGMKVLVFKPAIDTR-------------YGVGKVSSRIGLS----------S 59 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHH---cCCeEEEEecccccc-------------cccceeeeccCCc----------c
Confidence 3689999999999984443333322 233788888763221 0111111111221 1
Q ss_pred CeEEEEcchHHHHhhhcCccccCCcceEEeeccccc
Q 011446 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (485)
Q Consensus 239 ~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (485)
.-++|-.+..+...+..... ...+++|.||||+-+
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~-~~~~~~v~IDEaQF~ 94 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHE-KPPVDCVLIDEAQFF 94 (201)
T ss_pred cceecCChHHHHHHHHhccc-CCCcCEEEEehhHhC
Confidence 23445555556665554322 123789999999964
No 332
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.086 Score=51.02 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=68.4
Q ss_pred CcHHHHHHHHHHhcC--C---CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 143 PSPIQEESIPIALTG--S---DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~~--~---~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
++|++...+..+... + -.++.||.|+|||+.+...+-..+...+.... .-| .....++.+.....-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~--~~C-------g~C~~C~~~~~~~Hp 72 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGH--KPC-------GECMSCHLFGQGSHP 72 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC--CCC-------CcCHHHHHHhcCCCC
Confidence 367888887777643 2 38899999999998865544333221111000 001 012333333333333
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEE
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 297 (485)
.+..+.......+. . .....|-|-....+.+.+.. .......+++|+|++|.+ +......+.+.+...+.+..+|
T Consensus 73 D~~~~~p~~~~~~~-g--~~~~~I~id~iR~l~~~~~~-~p~~~~~kV~iiEp~~~L-d~~a~naLLk~LEep~~~~~~I 147 (325)
T PRK08699 73 DFYEITPLSDEPEN-G--RKLLQIKIDAVREIIDNVYL-TSVRGGLRVILIHPAESM-NLQAANSLLKVLEEPPPQVVFL 147 (325)
T ss_pred CEEEEecccccccc-c--ccCCCcCHHHHHHHHHHHhh-CcccCCceEEEEechhhC-CHHHHHHHHHHHHhCcCCCEEE
Confidence 33333221100000 0 00001111111122222222 122356789999999986 4445555666666665555555
Q ss_pred EEecc
Q 011446 298 MFSAT 302 (485)
Q Consensus 298 ~~SAT 302 (485)
++|-.
T Consensus 148 lvth~ 152 (325)
T PRK08699 148 LVSHA 152 (325)
T ss_pred EEeCC
Confidence 54443
No 333
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.1 Score=54.93 Aligned_cols=19 Identities=32% Similarity=0.307 Sum_probs=16.1
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
.|++||.|+|||+++.+.+
T Consensus 41 ~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999876544
No 334
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.034 Score=53.98 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
....+|||||||.|.. +-...+.+.+..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 5789999999998743 33444444444444455544444
No 335
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.53 E-value=0.028 Score=56.28 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHhcCCC--EEEEccCCCchhHHhHHHHHhhhhccC
Q 011446 143 PSPIQEESIPIALTGSD--ILARAKNGTGKTAAFCIPALEKIDQDN 186 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~~~~ 186 (485)
+.+.|.+.+..++.... +++.||||||||+. +..++..+....
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 36788888888877655 88899999999998 555666665443
No 336
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.45 E-value=0.1 Score=56.16 Aligned_cols=75 Identities=12% Similarity=0.229 Sum_probs=65.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-cccCCCCCCCCEEE
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-FTRGIDIQAVNVVI 430 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~~~Gidi~~v~~VI 430 (485)
...+++|.+||..-|.+.++.+.+. ++.+..+||+++..+|..+++...+|...|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 3458999999999999888877664 689999999999999999999999999999999985 45567788898877
No 337
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.45 E-value=0.1 Score=54.22 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=78.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccC-C-ceEEEEECCCChHHHHH
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHL-N-IQVMVTTGGTSLKDDIM 233 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~-~-~~v~~~~g~~~~~~~~~ 233 (485)
..+-.++..|=-.|||.... +++..+...-.+.++++++|.+..+..+++.+..+.+.. . ..+....| ..+ ..
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i 327 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SF 327 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EE
Confidence 44668889999999999755 565555544345699999999999999888877765532 1 11212222 111 00
Q ss_pred HhcCC--CeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhC-CCCCcEEEEecc
Q 011446 234 RLYQP--VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSAT 302 (485)
Q Consensus 234 ~~~~~--~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 302 (485)
...++ ..|.+.|.. ......-..++++|+|||+.+-. ..+..++-.+ ..+.++|++|.|
T Consensus 328 ~f~nG~kstI~FaSar------ntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 328 SFPDGSRSTIVFASSH------NTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred EecCCCccEEEEEecc------CCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecC
Confidence 11112 245555321 11112234789999999997643 2333333222 247889999987
No 338
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.44 E-value=0.079 Score=56.82 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=23.7
Q ss_pred CcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecccch
Q 011446 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPV 305 (485)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~ 305 (485)
...++||||+|++.. .....++..+. +.++++++||-+.
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCC
Confidence 456899999998632 12233344343 4567788877543
No 339
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.44 E-value=0.055 Score=47.54 Aligned_cols=146 Identities=14% Similarity=0.119 Sum_probs=78.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHH-HHHHHHHHHhccCCceEEEEECCCChHHHHHH
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELAL-QTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~-q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 234 (485)
....+++..++|.|||.+++--++..+..+ .+|+++.=.+--.. .=...+.++ .++.... .+....-.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G---~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~--~g~~~~~~--- 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG---KKVGVVQFIKGAWSTGERNLLEFG---GGVEFHV--MGTGFTWE--- 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC---CeEEEEEEecCCCccCHHHHHhcC---CCcEEEE--CCCCCccc---
Confidence 345699999999999999887777776643 36777652211100 001122221 1222221 11110000
Q ss_pred hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC--HHHHHHHHHhCCCCCcEEEEecccchHHHHHHH
Q 011446 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF--QPSVEQLIRFLPANRQILMFSATFPVTVKDFKD 312 (485)
Q Consensus 235 ~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~ 312 (485)
.....--.......+..... ...-..+++||+||+=..++.++ ...+..++...|...-+|++.-.+|+++.+.++
T Consensus 90 -~~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 90 -TQDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred -CCCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 00000000001111221121 22235789999999987776654 455777788888888888888888887777665
Q ss_pred Hh
Q 011446 313 KY 314 (485)
Q Consensus 313 ~~ 314 (485)
..
T Consensus 168 lV 169 (191)
T PRK05986 168 LV 169 (191)
T ss_pred hh
Confidence 43
No 340
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.43 E-value=0.069 Score=52.87 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=17.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhh
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKI 182 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l 182 (485)
..++|.||+|+|||.+.. .++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 469999999999998743 334333
No 341
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.41 E-value=0.065 Score=51.26 Aligned_cols=65 Identities=29% Similarity=0.377 Sum_probs=40.0
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 133 MGIFEKGFERPSPIQEESIPIAL-TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 133 ~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
..+.+.|. +.+.|.+.+..+. .+.+++|+|+||||||+.. -.++..+.......+++++=...++
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 33444443 4455555555444 5568999999999999873 4445554432223477777777666
No 342
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.41 E-value=0.051 Score=52.38 Aligned_cols=66 Identities=26% Similarity=0.320 Sum_probs=41.8
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHH-hcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 132 LMGIFEKGFERPSPIQEESIPIA-LTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 132 ~~~l~~~~~~~~~~~Q~~~i~~i-~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
+..+.+.|+ +.+.|.+.+..+ ..+.+++|+|+||||||+. +..++..+.......+++++-.+.++
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 344444454 456777777654 4567899999999999976 33344443222233477777777665
No 343
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.38 E-value=0.052 Score=51.56 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+.++++.||+|+|||+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3469999999999998864
No 344
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.37 E-value=0.054 Score=51.16 Aligned_cols=39 Identities=31% Similarity=0.307 Sum_probs=26.6
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 155 LTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
..+.-+++.|++|+|||+.....+....... +..+++++
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS 66 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTIS 66 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEE
Confidence 3456689999999999987665555544331 33677776
No 345
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.37 E-value=0.031 Score=54.79 Aligned_cols=26 Identities=12% Similarity=0.346 Sum_probs=19.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhh
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKID 183 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (485)
+.-++|+||||||||+.. ..++..+.
T Consensus 134 ~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 345999999999999873 44555554
No 346
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.34 E-value=0.61 Score=44.99 Aligned_cols=55 Identities=15% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCcceEEeeccccccCC-CCHHHHHHHHHhC------CCCCcEEEEecccchHHHHHHHHhc
Q 011446 261 KDCSMLVMDEADKLLSP-EFQPSVEQLIRFL------PANRQILMFSATFPVTVKDFKDKYL 315 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~-~~~~~~~~i~~~~------~~~~~~i~~SATl~~~~~~~~~~~~ 315 (485)
.++++||||=+-++... .....+..+...+ .++..++.++||...+....+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 56899999998875432 2233444444322 3445689999997654444444443
No 347
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.31 E-value=0.023 Score=52.25 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=12.6
Q ss_pred EEEEccCCCchhHH
Q 011446 160 ILARAKNGTGKTAA 173 (485)
Q Consensus 160 ~ii~~~TGsGKT~~ 173 (485)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999996
No 348
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.24 E-value=0.046 Score=52.05 Aligned_cols=58 Identities=26% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCCCcHHHHHHHHHHhcCC-CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHH
Q 011446 140 FERPSPIQEESIPIALTGS-DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~~~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (485)
|..+++-|...+-.+...+ +++++|.||||||+. +-.+...+... -+++++=-+.+|.
T Consensus 155 ~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~---eRvItiEDtaELq 213 (355)
T COG4962 155 FGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSD---ERVITIEDTAELQ 213 (355)
T ss_pred cCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCc---ccEEEEeehhhhc
Confidence 6788999999998888776 899999999999986 22233333322 2788887777663
No 349
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.24 E-value=0.16 Score=46.63 Aligned_cols=52 Identities=19% Similarity=0.089 Sum_probs=31.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
.+..+++.|++|+|||+.....+...+.. +.++++++.. +-..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 35669999999999998855555543332 2367777733 2233444444433
No 350
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.28 Score=51.79 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=15.6
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
+|+.||.|+|||+++...+
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999865443
No 351
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.23 E-value=0.11 Score=52.23 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.9
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.||+|+|||+.+.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999998754
No 352
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.20 E-value=0.031 Score=51.21 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=32.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhc-cCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
+..++|.|++|+|||+..+..+...+.. +. ++++++-. +-..++.+.+..+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge---~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGE---KVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS-S-HHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC---cEEEEEec-CCHHHHHHHHHHc
Confidence 4569999999999999877777776665 33 66777732 2233344444433
No 353
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.20 E-value=0.25 Score=47.82 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=23.8
Q ss_pred CcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
...+|+|||+|.+... ....+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999987432 2334555555555566666544
No 354
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.15 E-value=0.095 Score=51.70 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=31.3
Q ss_pred CcceEEeeccccccCC-CCHHHHHHHHHhCCC-CCcEEEEecccchHHH
Q 011446 262 DCSMLVMDEADKLLSP-EFQPSVEQLIRFLPA-NRQILMFSATFPVTVK 308 (485)
Q Consensus 262 ~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~-~~~~i~~SATl~~~~~ 308 (485)
++++++||.++.+... .....+-.++..+.. +.|+++.|-.+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6789999999987664 345555555555544 3477777766665544
No 355
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.14 E-value=0.21 Score=43.27 Aligned_cols=140 Identities=15% Similarity=0.161 Sum_probs=75.7
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHH-HHHHHHHh---ccCCceEEEEECCCChHHHHHHh
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT-SQVCKELG---KHLNIQVMVTTGGTSLKDDIMRL 235 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~-~~~~~~~~---~~~~~~v~~~~g~~~~~~~~~~~ 235 (485)
++|.-..|-|||++++--++..+..+ .++.|+.=.+--...= ...+..+. ...++.........+...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG---~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~----- 102 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHG---LRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDREA----- 102 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCC---CEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcHH-----
Confidence 77788889999999888888777653 3677665111110000 11222221 111111111111111111
Q ss_pred cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCH--HHHHHHHHhCCCCCcEEEEecccchHHHHHHHH
Q 011446 236 YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ--PSVEQLIRFLPANRQILMFSATFPVTVKDFKDK 313 (485)
Q Consensus 236 ~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~--~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~ 313 (485)
++ ......+..... ...-..+++||+||.-..+..++. ..+..++...|.+.-+|++.-..|+.+.+.+..
T Consensus 103 ----d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 103 ----DI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred ----HH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 11 111122221111 122236899999999877766543 456677787788888888887788888777664
Q ss_pred h
Q 011446 314 Y 314 (485)
Q Consensus 314 ~ 314 (485)
.
T Consensus 176 V 176 (198)
T COG2109 176 V 176 (198)
T ss_pred H
Confidence 3
No 356
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.09 E-value=0.12 Score=57.77 Aligned_cols=43 Identities=23% Similarity=0.478 Sum_probs=34.5
Q ss_pred CcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecccc
Q 011446 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATFP 304 (485)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~ 304 (485)
.--+||||++|.+.+......+..++...+.+..+|+.|-+.|
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3458999999988666666778888888999999988887754
No 357
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.09 E-value=0.11 Score=52.65 Aligned_cols=51 Identities=24% Similarity=0.176 Sum_probs=32.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
+.-+++.|++|+|||+..+..+..... .+.+++|++-- +...|+...+.++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 355899999999999976555544332 23478888743 3444555555444
No 358
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.06 E-value=0.13 Score=50.39 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=25.0
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
.....+|||||||.|. ..-...+.+.+..-+.+.-+|++|.
T Consensus 139 ~g~~rVviIDeAd~l~-~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMN-RNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcC-HHHHHHHHHHHhcCCCCceEEEEEC
Confidence 3467899999999873 2233445555555444555556553
No 359
>PF05729 NACHT: NACHT domain
Probab=95.02 E-value=0.15 Score=43.69 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.0
Q ss_pred CEEEEccCCCchhHHhHH
Q 011446 159 DILARAKNGTGKTAAFCI 176 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~ 176 (485)
-++|.|++|+|||+...-
T Consensus 2 ~l~I~G~~G~GKStll~~ 19 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK 19 (166)
T ss_pred EEEEECCCCCChHHHHHH
Confidence 478999999999987543
No 360
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.98 E-value=0.076 Score=45.94 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=41.2
Q ss_pred cCCcceEEeeccccccCCCC--HHHHHHHHHhCCCCCcEEEEecccchHHHHHHHH
Q 011446 260 LKDCSMLVMDEADKLLSPEF--QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDK 313 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~ 313 (485)
-..+++||+||+=..++.++ ...+..++...|++.-+|++.-.+|+.+.+.++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 35789999999987666553 3456677888888888888888888877776554
No 361
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.92 E-value=0.2 Score=53.86 Aligned_cols=75 Identities=8% Similarity=0.154 Sum_probs=63.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEc
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF 432 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~ 432 (485)
..++||.+|+++.+.++++.|.+. +..+..+||+++..+|...+.....|..+|+|+|..+. -+.+.++.+||.-
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvD 265 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVD 265 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEE
Confidence 458999999999999999999874 77899999999999999999999999999999998443 2567788887743
No 362
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.91 E-value=0.5 Score=44.41 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHh----cCC-CEEEEccCCCchhHHhH
Q 011446 143 PSPIQEESIPIAL----TGS-DILARAKNGTGKTAAFC 175 (485)
Q Consensus 143 ~~~~Q~~~i~~i~----~~~-~~ii~~~TGsGKT~~~~ 175 (485)
+++.+.+++..+. .+. .+++.||+|+|||+...
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3444455555433 223 48899999999998744
No 363
>PHA00729 NTP-binding motif containing protein
Probab=94.88 E-value=0.25 Score=44.78 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
+++|.|++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998643
No 364
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.84 E-value=0.17 Score=51.23 Aligned_cols=149 Identities=12% Similarity=0.063 Sum_probs=83.7
Q ss_pred CCcHHHHHHHHHHhc------C----CCEEEEccCCCchhHHhH-HHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHH
Q 011446 142 RPSPIQEESIPIALT------G----SDILARAKNGTGKTAAFC-IPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~------~----~~~ii~~~TGsGKT~~~~-~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
.+-|+|.-++..++. + +..+|..|-+-|||+.+. +.+...+.....+-.+.|++|+.+-+...+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 567999999998882 1 248999999999997655 33333344444555788899999988888887777
Q ss_pred HhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC--ccccCCcceEEeeccccccCCCCHHHHHHHHH
Q 011446 211 LGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQPSVEQLIR 288 (485)
Q Consensus 211 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~ 288 (485)
...... ........-.....|.+.-....+..+... ...-.+..+.|+||.|...... ..+..+..
T Consensus 141 mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~ 208 (546)
T COG4626 141 MVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKG 208 (546)
T ss_pred HHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHh
Confidence 665433 000000000011112222112222222221 2223356799999999865432 34444443
Q ss_pred hC--CCCCcEEEEecc
Q 011446 289 FL--PANRQILMFSAT 302 (485)
Q Consensus 289 ~~--~~~~~~i~~SAT 302 (485)
-+ +++.+++..|..
T Consensus 209 g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 209 GLGARPEGLVVYITTS 224 (546)
T ss_pred hhccCcCceEEEEecC
Confidence 33 345566666653
No 365
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.83 E-value=0.15 Score=53.76 Aligned_cols=20 Identities=40% Similarity=0.399 Sum_probs=16.3
Q ss_pred CEEEEccCCCchhHHhHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~ 178 (485)
.+|+.||.|+|||+.+...+
T Consensus 40 a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred eEEEECCCCCChHHHHHHHH
Confidence 47999999999999865443
No 366
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.4 Score=47.17 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=19.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhcc
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQD 185 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~ 185 (485)
.+++|.|+||+|||.+ ...++..+...
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHhh
Confidence 3599999999999987 44455555543
No 367
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.72 E-value=0.29 Score=51.09 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=15.7
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
.++.||.|+|||+++-..+
T Consensus 41 yLf~Gp~G~GKTt~Ar~lA 59 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFA 59 (563)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999865433
No 368
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.72 E-value=0.13 Score=51.06 Aligned_cols=80 Identities=20% Similarity=0.125 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHH
Q 011446 130 ELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK 209 (485)
Q Consensus 130 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~ 209 (485)
.+++.+++ .+..+-..|.++.-..-.|.- .|.|-.|||||...+.-+- .+...+..-++++.+=|+.|+.++.....
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~knPd~~I~~Tfftk~L~s~~r~lv~ 227 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHSKNPDSRIAFTFFTKILASTMRTLVP 227 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhcCCCCceEEEEeehHHHHHHHHHHHH
Confidence 34444443 233455567776555555544 7888999999987443332 33333444599999999999988877666
Q ss_pred HHh
Q 011446 210 ELG 212 (485)
Q Consensus 210 ~~~ 212 (485)
+++
T Consensus 228 ~F~ 230 (660)
T COG3972 228 EFF 230 (660)
T ss_pred HHH
Confidence 665
No 369
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.71 E-value=0.21 Score=53.24 Aligned_cols=75 Identities=13% Similarity=0.208 Sum_probs=64.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccc-ccCCCCCCCCEEE
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF-TRGIDIQAVNVVI 430 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~-~~Gidi~~v~~VI 430 (485)
...+++|.+|+..-|.+.++.+.+. ++.+..+||+++..+|..+++...+|+..|+|+|..+ ...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 3458999999999999988877664 6899999999999999999999999999999999854 4567788888877
No 370
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.71 E-value=0.045 Score=56.98 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=51.3
Q ss_pred HHHhcCCccEEEEccccccCCCCCCCCEE--------EEcCCCCChHHHHHHhhhccccCcccccch
Q 011446 401 HDFRNGACRNLVCTDLFTRGIDIQAVNVV--------INFDFPKNSETYLHRVCWIQLSFSLSLPNL 459 (485)
Q Consensus 401 ~~f~~g~~~vlvaT~~~~~Gidi~~v~~V--------I~~~~p~s~~~~~Qr~GRagR~g~~~~~~~ 459 (485)
++|..|+..|-|.+.+++.||.+..-+.| |.+.+|||....+|..||+.|..++.-|+.
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEY 917 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEY 917 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeE
Confidence 57899999999999999999998865544 467799999999999999999999888863
No 371
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.70 E-value=0.31 Score=48.49 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=16.2
Q ss_pred CEEEEccCCCchhHHhHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~ 178 (485)
.+++.||.|+|||+.+...+
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA 57 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFA 57 (394)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 38899999999998765443
No 372
>PRK06620 hypothetical protein; Validated
Probab=94.63 E-value=0.076 Score=48.12 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 448999999999998643
No 373
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.62 E-value=0.059 Score=49.91 Aligned_cols=38 Identities=24% Similarity=0.159 Sum_probs=27.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
.|.-++|.|++|+|||...+..++...... +..+++++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEe
Confidence 345689999999999987666566555442 33677777
No 374
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.59 E-value=0.2 Score=45.87 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=24.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
+..+++.|++|+|||+.+...+...+.. +..+++++
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is 55 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVT 55 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEE
Confidence 4669999999999998766555544432 22566666
No 375
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.53 E-value=0.59 Score=44.50 Aligned_cols=131 Identities=19% Similarity=0.273 Sum_probs=74.0
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcC
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 237 (485)
++++|-.|+|||+...-.+..+ ... +.++++.+ -.|+-|..+.+. +++..++.+..-..|.+..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l-~~~--g~~VllaA~DTFRAaAiEQL~~---w~er~gv~vI~~~~G~DpA-------- 207 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYL-KQQ--GKSVLLAAGDTFRAAAIEQLEV---WGERLGVPVISGKEGADPA-------- 207 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHH-HHC--CCeEEEEecchHHHHHHHHHHH---HHHHhCCeEEccCCCCCcH--------
Confidence 7889999999999844333322 222 22555554 456666544443 3334566665422222211
Q ss_pred CCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC-CCHHHHHHHHHhCCCCC------cEEEEecccchHHHHH
Q 011446 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANR------QILMFSATFPVTVKDF 310 (485)
Q Consensus 238 ~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~------~~i~~SATl~~~~~~~ 310 (485)
.|+| +-++. ..-+++++|++|=|-|+-+. +....+.++.+-+.+.. -++.+-||...+....
T Consensus 208 --aVaf-------DAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 208 --AVAF-------DAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred --HHHH-------HHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 1111 11111 12457899999999988663 45666777766665544 3455589987766665
Q ss_pred HHHhc
Q 011446 311 KDKYL 315 (485)
Q Consensus 311 ~~~~~ 315 (485)
++.|-
T Consensus 277 Ak~F~ 281 (340)
T COG0552 277 AKIFN 281 (340)
T ss_pred HHHHH
Confidence 55553
No 376
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.53 E-value=0.26 Score=50.83 Aligned_cols=74 Identities=8% Similarity=0.180 Sum_probs=62.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN 431 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~ 431 (485)
.+++||.+|++..+.++++.|.+. +..+..+||+++..+|..+......|..+|+|+|..+-. ..+.++.+||.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 458999999999999999999764 678899999999999999998888999999999975432 45777887773
No 377
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.45 Score=50.32 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=24.1
Q ss_pred ccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecc
Q 011446 259 ILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 259 ~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 302 (485)
.+...+++||||||.+... -...+.+.+...+...-+| +.+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~tifI-L~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAIFI-LATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeEEE-EEeC
Confidence 3567899999999987432 2233444444434444444 4444
No 378
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.52 E-value=0.39 Score=48.86 Aligned_cols=21 Identities=38% Similarity=0.256 Sum_probs=16.6
Q ss_pred CEEEEccCCCchhHHhHHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l 179 (485)
..++.||.|+|||+.+...+-
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999998654443
No 379
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.48 E-value=0.24 Score=48.88 Aligned_cols=51 Identities=24% Similarity=0.176 Sum_probs=31.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
+.-+++.|++|+|||+..+..+...... +.+++|+.-- +...|+...+.++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC-cCHHHHHHHHHHc
Confidence 4558999999999999765544433322 2378887643 3334444444443
No 380
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.46 E-value=0.42 Score=46.15 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEccCCCchhHHhHHHHH
Q 011446 143 PSPIQEESIPIAL----TGS---DILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 143 ~~~~Q~~~i~~i~----~~~---~~ii~~~TGsGKT~~~~~~~l 179 (485)
.+|++...+..+. .++ -.++.||.|.||++.+...+-
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~ 46 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQ 46 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHH
Confidence 3566666665544 333 378999999999987654443
No 381
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.40 E-value=0.14 Score=49.71 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHhcC-----CCEEEEccCCCchhHHhHHHH
Q 011446 143 PSPIQEESIPIALTG-----SDILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 143 ~~~~Q~~~i~~i~~~-----~~~ii~~~TGsGKT~~~~~~~ 178 (485)
++|+|...+..+... +-.++.||.|+||+..+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 367777777766642 238899999999998865444
No 382
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.40 E-value=0.12 Score=56.27 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCcHHHHHHHHHHHHHHhc
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELGK 213 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~~ 213 (485)
..+++-|.+++... ...++|.|..|||||.+.+.-+...+...+ ...++|+++-|+..|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35889999998753 467999999999999985554444443322 234799999999888888777766543
No 383
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.35 E-value=0.12 Score=54.44 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=26.6
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEE
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 299 (485)
+++-.++|+|||..-++..-...+...+..+..++.++..
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiI 520 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEE
Confidence 4556889999999877776666666666654445433333
No 384
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.28 E-value=0.58 Score=44.91 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCchhHHhHH
Q 011446 157 GSDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~ 176 (485)
++.+++.|++|+|||..+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35699999999999987543
No 385
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.16 E-value=0.14 Score=52.55 Aligned_cols=19 Identities=37% Similarity=0.356 Sum_probs=15.3
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
.++.||.|+|||+++.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999998865443
No 386
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.12 E-value=0.09 Score=51.82 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=14.4
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.||.|+|||..+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998754
No 387
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.043 Score=46.21 Aligned_cols=116 Identities=19% Similarity=0.281 Sum_probs=57.8
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCC
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP 238 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 238 (485)
.++|.|++|+|||+. ++-+.+.+.+.+.+... ++||- .++=....|.++..+..+....- .....
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~g~kvgG-f~t~E----------VR~gGkR~GF~Ivdl~tg~~~~l---a~~~~ 71 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREKGYKVGG-FITPE----------VREGGKRIGFKIVDLATGEEGIL---ARVGF 71 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhcCceeee-EEeee----------eecCCeEeeeEEEEccCCceEEE---EEcCC
Confidence 489999999999987 44455666665544333 33332 22334445666555542221000 00000
Q ss_pred CeEEEEcchHHHHhhhc-----CccccCCcceEEeeccccc--cCCCCHHHHHHHHHh
Q 011446 239 VHLLVGTPGRILDLSKK-----GVCILKDCSMLVMDEADKL--LSPEFQPSVEQLIRF 289 (485)
Q Consensus 239 ~~Ili~Tp~~l~~~~~~-----~~~~l~~~~~iViDEah~~--~~~~~~~~~~~i~~~ 289 (485)
...-++-++...+.+.+ -...+..-++||+||+--| ....|...+..++..
T Consensus 72 ~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 72 SRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred CCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 11122222222221110 0111334689999999855 334577777777653
No 388
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.10 E-value=0.14 Score=54.38 Aligned_cols=19 Identities=42% Similarity=0.371 Sum_probs=15.7
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
.|++||.|+|||+++-..+
T Consensus 43 YLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999865443
No 389
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.07 E-value=0.085 Score=51.32 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=29.7
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 153 IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 153 ~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
++..+.+++|+|+||||||+. +-.++..+.. ..+++.+=.+.++
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~---~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPP---QERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCC---CCCEEEECCCccc
Confidence 444678899999999999987 3334444432 2366666676665
No 390
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.99 E-value=0.023 Score=49.34 Aligned_cols=28 Identities=36% Similarity=0.682 Sum_probs=17.2
Q ss_pred CCcceEEeeccccc--cCCCCHHHHHHHHH
Q 011446 261 KDCSMLVMDEADKL--LSPEFQPSVEQLIR 288 (485)
Q Consensus 261 ~~~~~iViDEah~~--~~~~~~~~~~~i~~ 288 (485)
...+++|+||+=.| ...+|...+..++.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 46789999999865 34557777777766
No 391
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.97 E-value=0.081 Score=51.97 Aligned_cols=28 Identities=25% Similarity=0.137 Sum_probs=20.4
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHhhhh
Q 011446 155 LTGSDILARAKNGTGKTAAFCIPALEKID 183 (485)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (485)
-.|+.+.|+||+|+|||+.... +...+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~-i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQK-IAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHH-HHHhhc
Confidence 3678899999999999986433 444443
No 392
>PHA00350 putative assembly protein
Probab=93.93 E-value=0.73 Score=45.58 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=17.7
Q ss_pred EEEEccCCCchhHHhHHH-HHhhhh
Q 011446 160 ILARAKNGTGKTAAFCIP-ALEKID 183 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~-~l~~l~ 183 (485)
.++.|..|||||+.++.. ++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 578999999999987653 444443
No 393
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.92 E-value=0.19 Score=48.78 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=28.7
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 153 IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 153 ~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
++..+.+++|+|+||||||+. +-.++..+.. ..+++++=-+.++
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~ip~---~~ri~tiEd~~El 199 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREIPA---IERLITVEDAREI 199 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhCCC---CCeEEEecCCCcc
Confidence 344678899999999999987 3444554433 2366655444444
No 394
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=93.92 E-value=0.084 Score=46.11 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=23.1
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
.++.||++||||+..+--+- .+.. .+.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~-~~~~--~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIH-RYEI--AGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHHH--TT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHHHHH-HHHh--CCCeEEEEEecc
Confidence 57899999999998433322 2222 234788888864
No 395
>PRK10436 hypothetical protein; Provisional
Probab=93.91 E-value=0.11 Score=52.77 Aligned_cols=40 Identities=30% Similarity=0.440 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhc
Q 011446 144 SPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQ 184 (485)
Q Consensus 144 ~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~ 184 (485)
.+.|.+.+..++.. .-++++||||||||+.. ..++..+..
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 34455555544433 34899999999999973 445555543
No 396
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.90 E-value=0.21 Score=48.00 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHh----cCC---CEEEEccCCCchhHHhHHHHHh
Q 011446 142 RPSPIQEESIPIAL----TGS---DILARAKNGTGKTAAFCIPALE 180 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~----~~~---~~ii~~~TGsGKT~~~~~~~l~ 180 (485)
.++|+|...+..+. .++ -.++.||.|.||+..+...+-.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ 48 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRA 48 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHH
Confidence 45677777766555 333 3899999999999876544433
No 397
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.86 E-value=0.91 Score=44.62 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=29.9
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhC-CCCCcEEEEecccchHH
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSATFPVTV 307 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SATl~~~~ 307 (485)
.+...+|++||.|-- +-.-...+..++..+ ..+.-+|++|-+.|.++
T Consensus 125 ~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 125 AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 345679999999942 322333444554433 45677888888887553
No 398
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.85 E-value=0.49 Score=40.94 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=64.9
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCC
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPV 239 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 239 (485)
+.|....|=|||++++--++..+.. +.+|+++.=.+.-. .......+....++.....-.+......... .
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~---G~rV~ivQFlKg~~--~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~----~ 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH---GMRVLIVQFLKGGR--YSGELKALKKLPNVEIERFGKGFVWRMNEEE----E 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT---T--EEEEESS--SS----HHHHHHGGGT--EEEE--TT----GGGHH----H
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC---CCEEEEEEEecCCC--CcCHHHHHHhCCeEEEEEcCCcccccCCCcH----H
Confidence 5667778999999988777776654 44888886433300 0122222221112222211111000000000 0
Q ss_pred eEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCH--HHHHHHHHhCCCCCcEEEEecccchHHHHHHH
Q 011446 240 HLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ--PSVEQLIRFLPANRQILMFSATFPVTVKDFKD 312 (485)
Q Consensus 240 ~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~--~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~ 312 (485)
+ .......++.... ...-..+++||+||+=..++.++. ..+..++...+...-+|++.-.+|+.+.+.++
T Consensus 77 ~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 77 D--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp H--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred H--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 0 0000111222222 222357899999999877665543 45777788778888888888888877776654
No 399
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.84 E-value=0.39 Score=53.12 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=64.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-cccCCCCCCCCEEE
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-FTRGIDIQAVNVVI 430 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~~~Gidi~~v~~VI 430 (485)
...+++|.+||...|.+.++.+.+. ++.+..+++..+..++..+++.+..|...|||+|.. +...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3458999999999999999888764 677888999999999999999999999999999984 44567888888877
No 400
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.81 E-value=0.099 Score=47.73 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=28.6
Q ss_pred CCCcccccCCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhh
Q 011446 118 KGNEFEDYFLKRELLMGIF-EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 181 (485)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~ 181 (485)
....|++++|++-+.+... +.|. +|++|+|||||++. +..++.+
T Consensus 106 ~IPt~eeL~LPevlk~la~~kRGL-------------------viiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 106 KIPTFEELKLPEVLKDLALAKRGL-------------------VIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred cCCcHHhcCCcHHHHHhhcccCce-------------------EEEECCCCCCchhh-HHHHhcc
Confidence 3446888888876544322 2233 89999999999987 3334433
No 401
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=0.14 Score=49.38 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHH
Q 011446 158 SDILARAKNGTGKTAA 173 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (485)
+.++.+||+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5699999999999975
No 402
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.69 E-value=0.42 Score=51.96 Aligned_cols=21 Identities=33% Similarity=0.207 Sum_probs=16.9
Q ss_pred CCEEEEccCCCchhHHhHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~ 178 (485)
.++++.||+|+|||..+-..+
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la 224 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLA 224 (731)
T ss_pred CceEEECCCCCCHHHHHHHHH
Confidence 579999999999998754433
No 403
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.69 E-value=0.16 Score=49.72 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=25.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
+..++++||||||||+.. ..++..+... ...+++.+--..+.
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~-~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN-AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC-CCCEEEEEcCChhh
Confidence 345899999999999874 3344444332 22356655544443
No 404
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.67 E-value=0.12 Score=49.70 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
.++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999997643
No 405
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.65 E-value=0.13 Score=53.78 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=24.2
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEE
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 299 (485)
+++-+++|+||+-.-++..-...+...+....++.-+|..
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4566788888887666655555555555555444444443
No 406
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.64 E-value=1.4 Score=40.44 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=31.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
+.-+++.|++|+|||+.....+...+.. +.+++++.=.. -..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCC-CHHHHHHHHHHC
Confidence 4558999999999998876666655443 33677776332 223334444443
No 407
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.18 Score=48.88 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHH
Q 011446 158 SDILARAKNGTGKTAA 173 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (485)
++++..||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6799999999999975
No 408
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.46 E-value=0.3 Score=47.49 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEccCCCchhHHhHHHHH
Q 011446 143 PSPIQEESIPIAL----TGS---DILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 143 ~~~~Q~~~i~~i~----~~~---~~ii~~~TGsGKT~~~~~~~l 179 (485)
++|+|...+..+. .++ -.++.||.|.||++.+...+-
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~ 46 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHH
Confidence 5677777776655 333 378999999999988654443
No 409
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.48 Score=45.39 Aligned_cols=57 Identities=26% Similarity=0.230 Sum_probs=30.5
Q ss_pred cccCCCCcccccCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHH
Q 011446 114 VTATKGNEFEDYFLKRELLMGIFEK---GFERPSPIQEESIPIALTGSDILARAKNGTGKTAA 173 (485)
Q Consensus 114 ~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~ 173 (485)
+...+..++++.+=.++.++.+++. -...|--++.-.| -.-+-+++.||+|+|||++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI---~PPKGVLLYGPPGTGKTLL 201 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI---DPPKGVLLYGPPGTGKTLL 201 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC---CCCCceEeeCCCCCcHHHH
Confidence 3444555666665444445555432 1111111221111 1235699999999999986
No 410
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.38 E-value=0.45 Score=50.63 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHc-C-CeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 011446 343 QKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITEL-G-YSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT 418 (485)
Q Consensus 343 ~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~-~-~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~ 418 (485)
.|......++... ..+.+||.+|.+..+..+.+.|... + ..+..+|+++++.+|.+.+.....|+.+|+|.|-.+-
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 4555555555433 3458999999999999999999875 3 5789999999999999999999999999999998643
Q ss_pred cCCCCCCCCEEEEc
Q 011446 419 RGIDIQAVNVVINF 432 (485)
Q Consensus 419 ~Gidi~~v~~VI~~ 432 (485)
=.-+++...||..
T Consensus 252 -FaP~~~LgLIIvd 264 (665)
T PRK14873 252 -FAPVEDLGLVAIW 264 (665)
T ss_pred -EeccCCCCEEEEE
Confidence 3456677777733
No 411
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.28 E-value=0.51 Score=51.06 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=16.9
Q ss_pred CCCEEEEccCCCchhHHhHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIP 177 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~ 177 (485)
..++++.||+|+|||..+...
T Consensus 207 ~~n~LLvGppGvGKT~lae~l 227 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHH
Confidence 357999999999999875443
No 412
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.28 E-value=0.2 Score=47.01 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhc-C-CCEEEEccCCCchhHHhHHHHHhhhh
Q 011446 145 PIQEESIPIALT-G-SDILARAKNGTGKTAAFCIPALEKID 183 (485)
Q Consensus 145 ~~Q~~~i~~i~~-~-~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (485)
+.|.+.+..++. . ..+++.|+||||||+.. ..++..+.
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 345555544443 2 34899999999999873 33444443
No 413
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.063 Score=50.33 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
...++++.||||||||+.+.
T Consensus 96 ~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeccEEEECCCCCcHHHHHH
Confidence 34579999999999998765
No 414
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.15 E-value=0.73 Score=47.83 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=52.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCC-------eEEEEcCCCCHHHHHHHHHHHh----cCCccEEEE--ccccccCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGY-------SCFYIHAKMLQDHRNRVFHDFR----NGACRNLVC--TDLFTRGID 422 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~i~~~f~----~g~~~vlva--T~~~~~Gid 422 (485)
.++-+++|+|+.+-...+.+.....|+ +.+++-..-+ -+.+++.|. .|.-.+|+| -.-+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 347799999999999999998876542 2333333333 344666664 344456665 446789999
Q ss_pred CCC--CCEEEEcCCCC
Q 011446 423 IQA--VNVVINFDFPK 436 (485)
Q Consensus 423 i~~--v~~VI~~~~p~ 436 (485)
+.| .+.||.+|+|-
T Consensus 705 F~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPY 720 (821)
T ss_pred cccccccEEEEeecCC
Confidence 997 66788888764
No 415
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.15 E-value=0.24 Score=45.93 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.5
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
++++.||+|.|||+.+.
T Consensus 54 HvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 54 HVLLFGPPGLGKTTLAH 70 (332)
T ss_pred eEEeeCCCCCcHHHHHH
Confidence 49999999999998643
No 416
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.10 E-value=0.56 Score=42.25 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcC
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (485)
++-+.|.|++|+|||...+..+...... +.+++++.-
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~ 48 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDT 48 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEC
Confidence 4558999999999998866655554433 236777764
No 417
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.06 E-value=0.15 Score=47.13 Aligned_cols=51 Identities=14% Similarity=0.068 Sum_probs=34.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
+..++|.|++|+|||+.++..+...+.. +.+++|++ +.+-..++.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEE-eeCCHHHHHHHHHHh
Confidence 4569999999999999877666666543 33677776 234444555555544
No 418
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.01 E-value=0.14 Score=45.92 Aligned_cols=35 Identities=14% Similarity=0.443 Sum_probs=22.1
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcC
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (485)
++++||||||||+.. ..++..+.... +.+++.+--
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~-~~~i~t~e~ 38 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNK-THHILTIED 38 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcC-CcEEEEEcC
Confidence 789999999999974 33444444322 235555543
No 419
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.01 E-value=0.19 Score=51.44 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHhcCCC--EEEEccCCCchhHHhHHHHHhhhh
Q 011446 144 SPIQEESIPIALTGSD--ILARAKNGTGKTAAFCIPALEKID 183 (485)
Q Consensus 144 ~~~Q~~~i~~i~~~~~--~ii~~~TGsGKT~~~~~~~l~~l~ 183 (485)
.+-|.+.+..+..... ++++||||||||+.. ..++..+.
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 4566666666665433 789999999999873 33455554
No 420
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.97 E-value=1.6 Score=42.95 Aligned_cols=144 Identities=16% Similarity=0.072 Sum_probs=62.8
Q ss_pred EEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHH-HH---HHHHHHhccCCceEEEE--ECCCChHHHHHH
Q 011446 161 LARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQ-TS---QVCKELGKHLNIQVMVT--TGGTSLKDDIMR 234 (485)
Q Consensus 161 ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q-~~---~~~~~~~~~~~~~v~~~--~g~~~~~~~~~~ 234 (485)
++.++.|+|||.+....++..+...+....++++ |+..-+.. +. ..+..+... -...... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------ 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII------ 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE------
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE------
Confidence 5788999999999887777776665544355555 55544443 22 233333333 1222111 111100
Q ss_pred hcCCCeEEEEcchHH--HHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEeccc--chHHHHH
Q 011446 235 LYQPVHLLVGTPGRI--LDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF--PVTVKDF 310 (485)
Q Consensus 235 ~~~~~~Ili~Tp~~l--~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl--~~~~~~~ 310 (485)
+.++..|.+.+.+.- ..-+. -..+++|++||+-.+.+..+...+........... .++.|.|. ......+
T Consensus 73 ~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~~~~~ 146 (384)
T PF03237_consen 73 LPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGWFYEI 146 (384)
T ss_dssp ETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHH
T ss_pred ecCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCceeee
Confidence 124555666654321 11111 14678999999887655444444433333332222 22444443 2334444
Q ss_pred HHHhcCCC
Q 011446 311 KDKYLQKP 318 (485)
Q Consensus 311 ~~~~~~~~ 318 (485)
........
T Consensus 147 ~~~~~~~~ 154 (384)
T PF03237_consen 147 FQRNLDDD 154 (384)
T ss_dssp HHHHHCTS
T ss_pred eehhhcCC
Confidence 45444443
No 421
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.92 E-value=0.65 Score=52.69 Aligned_cols=75 Identities=7% Similarity=0.082 Sum_probs=63.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-cccCCCCCCCCEEE
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-FTRGIDIQAVNVVI 430 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~~~Gidi~~v~~VI 430 (485)
...+++|.+||...|.++++.+.+. ++.+..+++..+..++..+++....|..+|||+|.. +...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3568999999999999999888763 467888999999999999999999999999999974 44556777888877
No 422
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=92.92 E-value=0.37 Score=41.79 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=74.4
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHH-HHHHHHHhccCCceEEEEECC-----CChH-HHH
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT-SQVCKELGKHLNIQVMVTTGG-----TSLK-DDI 232 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~-~~~~~~~~~~~~~~v~~~~g~-----~~~~-~~~ 232 (485)
+.|.-..|=|||++++--++..+.. +.+|+|+.=.+--...= ...+..+ . ++.+...-.+ .+.. ...
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAaG~---G~rV~iiQFlKg~~~~GE~~~l~~~-~--~v~~~~~g~~~~~~~~~~~~~~~ 97 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIAGQ---GTPVLIVQFLKGGIQQGPDRPIQLG-Q--NLDWVRCDLPRCLDTPHLDESEK 97 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhcC---CCEEEEEEEecCCCcchHHHHHHhC-C--CcEEEECCCCCeeeCCCcCHHHH
Confidence 6677788999999988877777654 44788776222110000 1112221 1 2322221100 0100 010
Q ss_pred HHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC--HHHHHHHHHhCCCCCcEEEEecccchHHHHH
Q 011446 233 MRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF--QPSVEQLIRFLPANRQILMFSATFPVTVKDF 310 (485)
Q Consensus 233 ~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~--~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~ 310 (485)
. .....+..... ...-..+++||+||+=..++.++ ...+..++...|.+.-+|++.-.+|+.+.+.
T Consensus 98 ~-----------~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~ 165 (178)
T PRK07414 98 K-----------ALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAI 165 (178)
T ss_pred H-----------HHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 0 00112222211 12235789999999987776654 3557777888888888888888888777765
Q ss_pred HH
Q 011446 311 KD 312 (485)
Q Consensus 311 ~~ 312 (485)
++
T Consensus 166 AD 167 (178)
T PRK07414 166 AD 167 (178)
T ss_pred CC
Confidence 54
No 423
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.88 E-value=0.15 Score=48.19 Aligned_cols=43 Identities=28% Similarity=0.367 Sum_probs=29.4
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 155 LTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
..+..++++|+||||||+.. ..++..+... ..+++++-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 44677999999999999984 4445555543 2377777766665
No 424
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.86 E-value=0.14 Score=52.85 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHhhhh
Q 011446 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKID 183 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (485)
+|+.+|.+.+..+. .|+.-|...|||+|||+..+=.++.++.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 68899998887655 5788999999999999987777776663
No 425
>PRK07413 hypothetical protein; Validated
Probab=92.82 E-value=1.2 Score=43.74 Aligned_cols=185 Identities=17% Similarity=0.159 Sum_probs=100.7
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccC---CceEEEEEcCcHH----HHHHHHHHHHHHhccC--CceEEEEECC-----
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDN---NVIQVVILVPTRE----LALQTSQVCKELGKHL--NIQVMVTTGG----- 225 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~P~~~----la~q~~~~~~~~~~~~--~~~v~~~~g~----- 225 (485)
+.|.-..|=|||++++--++..+..+. ...+|+|+.=.+- --+ ...+..+.... ++.+...-.+
T Consensus 22 i~VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~ivQFlKg~~~~~GE--~~~l~~l~~~~~~~i~~~~~g~~~~~~~ 99 (382)
T PRK07413 22 LHVYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRFLKGPGRAYDE--DAAIEALQRGFPHLIDQVRTGRAEFFGA 99 (382)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEEEEEcCCCCCCcH--HHHHHhccccCCCceEEEECCCCCeeeC
Confidence 677788899999999888888776542 1237777651111 111 11222221111 2222211100
Q ss_pred -CChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCH--HHHHHHHHhCCCCCcEEEEecc
Q 011446 226 -TSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ--PSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 226 -~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT 302 (485)
.....+... ....+..... ...-..+++||+||+-..++.++. ..+..++...|...-+|++.-.
T Consensus 100 ~~~~~~~~~~-----------a~~~~~~a~~-~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ 167 (382)
T PRK07413 100 DEITKFDRQE-----------AQRGWDIAKG-AIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRA 167 (382)
T ss_pred CCCcHHHHHH-----------HHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCC
Confidence 011111100 0122222222 222357899999999877766543 4566778888888888888888
Q ss_pred cchHHHHHHHHh-----cCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCC
Q 011446 303 FPVTVKDFKDKY-----LQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQIN 358 (485)
Q Consensus 303 l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 358 (485)
+|+.+.+.++.. ..+|+...+...+..+...+.|.-.-.......+-..++....+
T Consensus 168 ap~~Lie~ADlVTEm~~iKHp~~~~~~~~~~~~g~i~VYTG~GKGKTTAAlGlAlRA~G~G 228 (382)
T PRK07413 168 APQSLLDIADLHSEMRPHRRPTASELGVPFNSSGGIEIYTGEGKGKSTSALGKALQAIGRG 228 (382)
T ss_pred CCHHHHHhCCeeEEeceecCCCcCCCCcccCCCCeEEEEeCCCCCchHHHHHHHHHHhcCC
Confidence 888888877653 33444444444555555555554444444455566666666555
No 426
>PRK09087 hypothetical protein; Validated
Probab=92.80 E-value=0.32 Score=44.50 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=22.3
Q ss_pred ceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEeccc
Q 011446 264 SMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (485)
Q Consensus 264 ~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl 303 (485)
++|++|++|.+. .-...+..++..+......+++|++.
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCC
Confidence 479999999763 22445556665554433345555553
No 427
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.77 E-value=0.19 Score=48.91 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||+.+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999998744
No 428
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=1.9 Score=40.31 Aligned_cols=49 Identities=27% Similarity=0.253 Sum_probs=28.9
Q ss_pred HHHHhcCC-----CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHH
Q 011446 151 IPIALTGS-----DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ 206 (485)
Q Consensus 151 i~~i~~~~-----~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~ 206 (485)
+|.+..|+ -+++.||+|+||+..+-..+.+ .+ ...+-+.+..|+..|..
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE------An-STFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE------AN-STFFSVSSSDLVSKWMG 208 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh------cC-CceEEeehHHHHHHHhc
Confidence 35566663 3899999999999653322221 11 34555666666544443
No 429
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.72 E-value=0.2 Score=52.53 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhh
Q 011446 144 SPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKID 183 (485)
Q Consensus 144 ~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (485)
.+.|.+.+..++.. .-++++||||||||+.. ..++..+.
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 45566666655543 34889999999999883 44566554
No 430
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.72 E-value=0.46 Score=48.91 Aligned_cols=59 Identities=20% Similarity=0.108 Sum_probs=39.8
Q ss_pred HHHHHHhcC-----CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 149 ESIPIALTG-----SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 149 ~~i~~i~~~-----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
..++.++.| ..++|.||+|+|||+..+..+...+.+ +.+++|++ .-+...|+...+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN---KERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEE-eeCCHHHHHHHHHHc
Confidence 445666644 459999999999999877666655543 33778876 445555666666655
No 431
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=92.64 E-value=1.9 Score=47.29 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||..+-
T Consensus 348 ~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGK 365 (775)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998643
No 432
>PRK05973 replicative DNA helicase; Provisional
Probab=92.62 E-value=0.24 Score=45.42 Aligned_cols=55 Identities=20% Similarity=0.102 Sum_probs=34.3
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 153 IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 153 ~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
-+..|.-++|.|++|+|||+..+..+...... +.+++|++-- +-..++.+.+..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEe-CCHHHHHHHHHHc
Confidence 33445669999999999999877666655543 3367777522 2234445555544
No 433
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.61 E-value=0.21 Score=46.30 Aligned_cols=20 Identities=30% Similarity=0.172 Sum_probs=17.2
Q ss_pred HhcCCCEEEEccCCCchhHH
Q 011446 154 ALTGSDILARAKNGTGKTAA 173 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~ 173 (485)
+-.|+.++|.|+.|+|||+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34678899999999999975
No 434
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.60 E-value=0.11 Score=51.90 Aligned_cols=47 Identities=32% Similarity=0.326 Sum_probs=35.0
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
++++.|+||||||.++++|.+.... ..+||+=|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~-----~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP-----GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC-----CCEEEEccchhHHHHHHHHHHH
Confidence 4789999999999999888765432 3678888998887655544443
No 435
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.55 E-value=0.67 Score=45.92 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.||.|+|||+.+.
T Consensus 41 ~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 41 ALLFCGPRGVGKTTCAR 57 (367)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999998754
No 436
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.50 E-value=0.29 Score=48.05 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=19.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhh
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKID 183 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (485)
.|+..+|.||.|+|||+.+.. +...+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~-Ian~I~ 194 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQN-IANSIT 194 (416)
T ss_pred cCceEEEeCCCCCChhHHHHH-HHHHHH
Confidence 578899999999999976332 444443
No 437
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=1.1 Score=45.22 Aligned_cols=72 Identities=21% Similarity=0.203 Sum_probs=43.2
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHH----HHh---c-C----CCEEEEccCCCchhHHhHHHHHhhhhccCCc
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIP----IAL---T-G----SDILARAKNGTGKTAAFCIPALEKIDQDNNV 188 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~----~i~---~-~----~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~ 188 (485)
--+.++.+++.++.....|+-...+.=.+.+. .+. . . ..+++.||.|||||..+.-.++. ..-
T Consensus 490 VkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~F 564 (744)
T KOG0741|consen 490 VKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS-----SDF 564 (744)
T ss_pred cCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh-----cCC
Confidence 34567788888888888776654443333332 111 1 1 24899999999999764433332 233
Q ss_pred eEEEEEcCc
Q 011446 189 IQVVILVPT 197 (485)
Q Consensus 189 ~~~lil~P~ 197 (485)
+.+=++.|.
T Consensus 565 PFvKiiSpe 573 (744)
T KOG0741|consen 565 PFVKIISPE 573 (744)
T ss_pred CeEEEeChH
Confidence 456666664
No 438
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.41 E-value=1.5 Score=43.31 Aligned_cols=131 Identities=16% Similarity=0.246 Sum_probs=77.8
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcC
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 237 (485)
++.+|=-|||||+...-.+. ++... +.++++++ ..|.-| .+.++.+++..++.+.....+.+.- ++..
T Consensus 103 ImmvGLQGsGKTTt~~KLA~-~lkk~--~~kvllVaaD~~RpAA---~eQL~~La~q~~v~~f~~~~~~~Pv-~Iak--- 172 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAK-YLKKK--GKKVLLVAADTYRPAA---IEQLKQLAEQVGVPFFGSGTEKDPV-EIAK--- 172 (451)
T ss_pred EEEEeccCCChHhHHHHHHH-HHHHc--CCceEEEecccCChHH---HHHHHHHHHHcCCceecCCCCCCHH-HHHH---
Confidence 77899999999998554333 23332 22445444 445555 4555566666666554431111111 1100
Q ss_pred CCeEEEEcchHHHHhhhcCccccCCcceEEeecccccc-CCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhc
Q 011446 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL-SPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYL 315 (485)
Q Consensus 238 ~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~-~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~ 315 (485)
.-+...+ ...+++||+|=|-|+. +...-..+..+-..+.++--++.+-|+...+....+..|-
T Consensus 173 ----------~al~~ak-----~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 173 ----------AALEKAK-----EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred ----------HHHHHHH-----HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 0111111 3357899999998763 3345666777778888888888899998777766666553
No 439
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.36 E-value=0.7 Score=47.95 Aligned_cols=67 Identities=18% Similarity=0.353 Sum_probs=54.7
Q ss_pred EEEEecChhHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc-----ccccC-CCCCCCCE
Q 011446 360 SIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LFTRG-IDIQAVNV 428 (485)
Q Consensus 360 ~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~~~G-idi~~v~~ 428 (485)
+||++||++.|.++++.+... ++.+..++|+++...+...++ .| ..|||||+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999988764 467889999998877765544 46 89999998 34555 88889998
Q ss_pred EE
Q 011446 429 VI 430 (485)
Q Consensus 429 VI 430 (485)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 88
No 440
>PRK13764 ATPase; Provisional
Probab=92.30 E-value=0.27 Score=51.32 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhh
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKID 183 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (485)
..+++++++++.+++.+. .....++++|+||||||+.. ..++..+.
T Consensus 237 ~~~Le~l~l~~~l~~~l~------------------~~~~~ILIsG~TGSGKTTll-~AL~~~i~ 282 (602)
T PRK13764 237 KLSLEDYNLSEKLKERLE------------------ERAEGILIAGAPGAGKSTFA-QALAEFYA 282 (602)
T ss_pred CCCHHHhCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 345677776665544332 23466999999999999864 44555554
No 441
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.29 E-value=0.25 Score=43.32 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=24.9
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHH
Q 011446 154 ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (485)
+..++++++.|++|+|||..+...+-..+. . +..++++ +...|.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~--g~~v~f~-~~~~L~ 87 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR-K--GYSVLFI-TASDLL 87 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH-T--T--EEEE-EHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-C--CcceeEe-ecCcee
Confidence 345678999999999999875544433333 2 2244544 444453
No 442
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.10 E-value=1.8 Score=41.80 Aligned_cols=52 Identities=8% Similarity=0.165 Sum_probs=28.7
Q ss_pred HHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecc
Q 011446 248 RILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 248 ~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 302 (485)
.+.+.+.... .....+++|||+||.|.. .-...+.+++..-+ +..+|++|..
T Consensus 111 ~i~~~l~~~p-~~~~~kVvII~~ae~m~~-~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 111 EIKRFLSRPP-LEAPRKVVVIEDAETMNE-AAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHccCc-ccCCceEEEEEchhhcCH-HHHHHHHHHHhCCC-CCeEEEEECC
Confidence 3444343322 245789999999998732 23334444444444 5545555443
No 443
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.03 E-value=1.4 Score=48.76 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=16.1
Q ss_pred CCEEEEccCCCchhHHhHH
Q 011446 158 SDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (485)
.+.++.||+|+|||..+..
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 5699999999999987553
No 444
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.00 E-value=0.81 Score=44.52 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=23.7
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
....+++||||||++.. .-...+.+.+..-+.+..+|++|.
T Consensus 108 ~~~~kvviI~~a~~~~~-~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA-SAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCH-HHHHHHHHHhcCCCCCceEEEEeC
Confidence 45679999999998732 223333344444344555555443
No 445
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.99 E-value=0.18 Score=51.86 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=36.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
.++++.||||||||..+++|.+-... ..+||+=|--++........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~-----~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYP-----GSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhcc-----CCEEEEECCCcHHHHHHHHHHHC
Confidence 46999999999999999999774321 15677779888876555544443
No 446
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.74 E-value=0.17 Score=44.32 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=27.8
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCC-CCcEEEEecc
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPA-NRQILMFSAT 302 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT 302 (485)
.+.+++++||....++......+...+..+.. +.++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 46789999999987776656656555554433 3566666543
No 447
>PRK09354 recA recombinase A; Provisional
Probab=91.74 E-value=0.72 Score=44.82 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=28.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
++-+.|.||+|||||+..+..+...... +..++++..--.+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~---G~~~~yId~E~s~ 100 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHAL 100 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccch
Confidence 4568899999999999866665555433 3367777654444
No 448
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.66 E-value=0.76 Score=38.68 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=23.1
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhC
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFL 290 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~ 290 (485)
+.+.+++++||.-.-++......+..++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 4467899999998777766666676676665
No 449
>PHA00012 I assembly protein
Probab=91.64 E-value=2.2 Score=40.73 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.5
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhcc
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQD 185 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~ 185 (485)
-+|.|..|+|||+.++.-+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 57899999999999777666666543
No 450
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.57 E-value=0.42 Score=42.24 Aligned_cols=33 Identities=30% Similarity=0.454 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHh
Q 011446 142 RPSPIQEESIPIAL-TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~-~~~~~ii~~~TGsGKT~~~ 174 (485)
.+.+-|.+.+.... .+..++++||||||||+.+
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 35566777776555 4567999999999999863
No 451
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=91.54 E-value=0.34 Score=47.72 Aligned_cols=64 Identities=25% Similarity=0.289 Sum_probs=42.1
Q ss_pred CCCCCCCccccccccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhh
Q 011446 102 IPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEK 181 (485)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~ 181 (485)
.|+-+..+..-.+.+--...+++++|++.+.+.|.+. .+-++|.|++|+|||+-++ ++-..
T Consensus 226 rPPfSd~~EITavRPvvk~~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaq-AlAef 286 (604)
T COG1855 226 RPPFSDRWEITAVRPVVKLSLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQ-ALAEF 286 (604)
T ss_pred cCCCCCceEEEEEeeeEEechhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHH-HHHHH
Confidence 3343334433344444556799999999999998763 2349999999999997533 33333
Q ss_pred hhc
Q 011446 182 IDQ 184 (485)
Q Consensus 182 l~~ 184 (485)
+..
T Consensus 287 y~~ 289 (604)
T COG1855 287 YAS 289 (604)
T ss_pred HHh
Confidence 433
No 452
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.53 E-value=1.6 Score=48.24 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.4
Q ss_pred CCEEEEccCCCchhHHhHHH
Q 011446 158 SDILARAKNGTGKTAAFCIP 177 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~ 177 (485)
.++++.||+|+|||..+...
T Consensus 200 ~n~lL~G~pGvGKT~l~~~l 219 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGL 219 (857)
T ss_pred CceEEECCCCCCHHHHHHHH
Confidence 46999999999999875433
No 453
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.51 E-value=0.77 Score=46.72 Aligned_cols=51 Identities=24% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
+.-+++.|++|+|||+..+..+...... +.+++|+..- +...|+...+.++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECc-CCHHHHHHHHHHc
Confidence 4558999999999999866554443322 2368888753 3344554444443
No 454
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.46 E-value=0.4 Score=44.90 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=26.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
+.-++|.|++|+|||+..+..+...+.. +.+++|++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis 71 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVT 71 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 4568999999999999866666654443 33677776
No 455
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.44 E-value=0.25 Score=51.88 Aligned_cols=56 Identities=29% Similarity=0.190 Sum_probs=41.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEE
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVT 222 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~ 222 (485)
+++++.||||||||..+++|.+..+. ..+||+=|--++........++. |..|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~-----~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE-----DSVVVHDIKLENYELTSGWREKQ----GQKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC-----CCEEEEeCcHHHHHHHHHHHHHC----CCeEEEE
Confidence 46999999999999999999887642 25777889999976655555443 4445443
No 456
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.43 E-value=1.5 Score=41.16 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHHh
Q 011446 158 SDILARAKNGTGKTAAF 174 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (485)
+++++.||+|||||+.+
T Consensus 112 ~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLL 128 (270)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 46899999999999863
No 457
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.42 E-value=1.2 Score=45.94 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=77.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHH-HHhccCCce-EEEEECCCChHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK-ELGKHLNIQ-VMVTTGGTSLKDDIMR 234 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~-~~~~~~~~~-v~~~~g~~~~~~~~~~ 234 (485)
.+-.+..-|--.|||.. +.|++..+...-.+.++.|++.-+--++-+..++. ++..+++-+ +...
T Consensus 202 QkaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~------------ 268 (668)
T PHA03372 202 QKATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN------------ 268 (668)
T ss_pred ccceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee------------
Confidence 35567778999999985 78888888776677899999988877766655432 222223221 1111
Q ss_pred hcCCCeEEEEcchHH-----HHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhC-CCCCcEEEEecc
Q 011446 235 LYQPVHLLVGTPGRI-----LDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSAT 302 (485)
Q Consensus 235 ~~~~~~Ili~Tp~~l-----~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 302 (485)
.+..|.+.-|+.= ..........-.+++++++||||-+ -...+..++..+ ..++++|..|.|
T Consensus 269 --k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 269 --KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred --cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhhhhhcccCceEEEEeCC
Confidence 1123334333311 1112222333457899999999965 234455665554 367889999877
No 458
>PF12846 AAA_10: AAA-like domain
Probab=91.39 E-value=0.23 Score=47.48 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=27.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
+++++|.|+||||||+.... ++..+...+ ..++++=|..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~-l~~~~~~~g--~~~~i~D~~g~~ 41 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN-LLEQLIRRG--PRVVIFDPKGDY 41 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHcC--CCEEEEcCCchH
Confidence 35799999999999988664 443333322 356666566444
No 459
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.33 E-value=0.98 Score=49.21 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 011446 157 GSDILARAKNGTGKTAAF 174 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (485)
++.+++.||+|+|||+.+
T Consensus 212 ~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CceEEEECCCCCChHHHH
Confidence 467999999999999763
No 460
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.12 E-value=1.3 Score=46.79 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=27.3
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHH---hcCCCEEEEccCCCchhHHhH
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIA---LTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i---~~~~~~ii~~~TGsGKT~~~~ 175 (485)
..++++..++..++.+... .-+.. ..++-+++.||+|+|||+.+-
T Consensus 81 ~~ldel~~~~~ki~~l~~~-----------l~~~~~~~~~~~illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETW-----------LKAQVLENAPKRILLITGPSGCGKSTTIK 128 (637)
T ss_pred CCHHHhcCcHHHHHHHHHH-----------HHhcccccCCCcEEEEECCCCCCHHHHHH
Confidence 3566666777666655431 11111 122348999999999998643
No 461
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.10 E-value=0.93 Score=39.66 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=27.4
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
+.+.+++++||.-.-++......+..++..+..+.-+|+.|
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~s 154 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 55678999999987777666666666666654444344444
No 462
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.05 E-value=1.1 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.149 Sum_probs=17.7
Q ss_pred CCEEEEccCCCchhHHhHHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l 179 (485)
+++++.||+|+|||..+...+.
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 5799999999999988654443
No 463
>PRK13695 putative NTPase; Provisional
Probab=91.04 E-value=2.1 Score=37.21 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.9
Q ss_pred CEEEEccCCCchhHHhHH
Q 011446 159 DILARAKNGTGKTAAFCI 176 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~ 176 (485)
.+++.|+.|+|||+.+..
T Consensus 2 ~i~ltG~~G~GKTTll~~ 19 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK 19 (174)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999997553
No 464
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.95 E-value=0.86 Score=41.56 Aligned_cols=41 Identities=22% Similarity=0.053 Sum_probs=26.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhcc---CCceEEEEEcCc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILVPT 197 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P~ 197 (485)
+.-+.|.|++|+|||...+..+....... +....++++..-
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 45689999999999987665544433321 112467777653
No 465
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=90.92 E-value=0.2 Score=50.99 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=20.4
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCC
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP 291 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~ 291 (485)
-.++++.||||+|.+.... +..+++.+.
T Consensus 117 ~~ryKVyiIDEvHMLS~~a----fNALLKTLE 144 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQA----FNALLKTLE 144 (515)
T ss_pred cccceEEEEecHHhhhHHH----HHHHhcccc
Confidence 5688999999999875444 445666554
No 466
>PRK14701 reverse gyrase; Provisional
Probab=90.90 E-value=1 Score=52.92 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=53.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc------CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 416 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~------~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~ 416 (485)
...++||.+|+++.+.++++.|... ++.+..+||+++..++..+++.+.+|..+|||+|.-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 3458999999999999999998873 467789999999999999999999999999999984
No 467
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=90.87 E-value=1 Score=44.77 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.0
Q ss_pred HHHhcCCCEEEEccCCCchhHHhHH
Q 011446 152 PIALTGSDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 152 ~~i~~~~~~ii~~~TGsGKT~~~~~ 176 (485)
+.+..+.+++..||+|+|||-.|.-
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHH
Confidence 6667788999999999999976553
No 468
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=90.87 E-value=8.7 Score=37.22 Aligned_cols=57 Identities=11% Similarity=0.215 Sum_probs=40.4
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCeEEEE-----cCCCCHHHHHHHHHHHhcCCccEEEEcc
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYI-----HAKMLQDHRNRVFHDFRNGACRNLVCTD 415 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~-----h~~~~~~~r~~i~~~f~~g~~~vlvaT~ 415 (485)
...+++.|| +...-+.+.+.|.+.|+.+.-. |-..+..+-+.+........ .||+|.
T Consensus 226 ~~~~v~a~s-GIg~P~~F~~~L~~~G~~~~~~~~f~DHh~yt~~dl~~l~~~a~~~~--~iltTe 287 (326)
T PF02606_consen 226 KGKPVLAFS-GIGNPERFFDTLESLGIEVVGTLAFPDHHRYTEQDLEKLEAEAKAAG--IILTTE 287 (326)
T ss_pred cCCeeEEEE-EcCChHHHHHHHHHcCCeEEEeeECCCCCCCCHHHHHHHHHhhcccc--eEEecH
Confidence 334565555 5677788888899988766522 66788888888877765544 888887
No 469
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.85 E-value=2.1 Score=38.13 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=63.8
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc---CcHHHHHHHHHHHHHHhccC---CceEEEEE-CCCChHHH
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV---PTRELALQTSQVCKELGKHL---NIQVMVTT-GGTSLKDD 231 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~---P~~~la~q~~~~~~~~~~~~---~~~v~~~~-g~~~~~~~ 231 (485)
=++|.|+.|+|||...+..++-.+.++. ++.+++ ++++...|....-..+.+.+ .+.+..+. .+......
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~~g~---~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~ 106 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLMNGY---RVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRR 106 (235)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhCCc---eEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChH
Confidence 3899999999999887777766665433 556665 55555444332111110000 01111110 01111100
Q ss_pred HHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHH---HHhCCCCCcEEEEeccc
Q 011446 232 IMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQL---IRFLPANRQILMFSATF 303 (485)
Q Consensus 232 ~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i---~~~~~~~~~~i~~SATl 303 (485)
+-..+++.+.+.. ...+-+++|+|=...+.-.+-...+..+ ++.+...-++|++|+-+
T Consensus 107 -------------~~~~~L~~l~~~~-k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 107 -------------SARKLLDLLLEFI-KRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred -------------HHHHHHHHHHhhH-HhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 0112333332211 1556789999988855433322223333 34444566899999875
No 470
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.81 E-value=1.3 Score=44.72 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=24.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
.|.-++|.|++|+|||...+-.+....... +..+++++
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~--g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALRE--GKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 345589999999999987655544433222 23566665
No 471
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=0.9 Score=43.75 Aligned_cols=54 Identities=22% Similarity=0.074 Sum_probs=29.8
Q ss_pred cccccCCCHHHHHHHHHcCCCC-CcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 011446 121 EFEDYFLKRELLMGIFEKGFER-PSPIQEESIPIALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~-~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~ 174 (485)
+|.|.+=-+.+.+.+.+.=.-. -+|-.-.--..+...+.+++.||.|+|||+++
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 4666665666666666532111 11111111112223467999999999999874
No 472
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=90.78 E-value=1.7 Score=38.79 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=28.0
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhC-CC--CCcEEEEecc
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PA--NRQILMFSAT 302 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~-~~--~~~~i~~SAT 302 (485)
.+.+++++||...-++......+..++... .. ..+++++|.-
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th 174 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQ 174 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 577899999999877766666566655443 22 3456666654
No 473
>PRK04328 hypothetical protein; Provisional
Probab=90.78 E-value=0.38 Score=44.78 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=32.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
+..++|.|++|+|||+..+..+...+.++ .+++|++ +.+-..++.+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~g---e~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMG---EPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEE-eeCCHHHHHHHHHHc
Confidence 45689999999999988666666655442 2566665 223333444555544
No 474
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.60 E-value=1.2 Score=41.78 Aligned_cols=37 Identities=24% Similarity=0.151 Sum_probs=27.2
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcC
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (485)
.-++|.|.||.|||+.++-.+...+...+ ..++|++.
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~Sl 56 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSL 56 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEES
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcC
Confidence 34889999999999987776666665432 47888873
No 475
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.51 E-value=0.31 Score=45.75 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCEEEEccCCCchhHHhH
Q 011446 148 EESIPIALTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 148 ~~~i~~i~~~~~~ii~~~TGsGKT~~~~ 175 (485)
+.++..+..+.++++.||+|+|||.++.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3455666778999999999999999854
No 476
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=90.50 E-value=0.21 Score=45.62 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHH
Q 011446 158 SDILARAKNGTGKTAA 173 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (485)
+.++|.||.|+|||..
T Consensus 21 ~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSL 36 (234)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred cEEEEEcCCcCCHHHH
Confidence 5689999999999985
No 477
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.45 E-value=0.38 Score=51.17 Aligned_cols=47 Identities=30% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK 209 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~ 209 (485)
+++++.||||||||..+++|-+..+. ..+||+=|--++........+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~-----gS~VV~DpKGE~~~~Ta~~R~ 186 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK-----GSVIALDVKGELFELTSRARK 186 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC-----CCEEEEeCCchHHHHHHHHHH
Confidence 57999999999999999999876542 267777788888655444433
No 478
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.36 E-value=1.5 Score=46.62 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=52.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc-----ccc-cCCCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LFT-RGIDIQA 425 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~~-~Gidi~~ 425 (485)
..++||.||+++.|.++++.+... ++.+..+||+.+...+...+ . ....|||+|. .+. ..+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 347999999999999998887664 67889999998766554433 2 3568999995 222 3467888
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+.+||
T Consensus 150 l~~lV 154 (629)
T PRK11634 150 LSGLV 154 (629)
T ss_pred ceEEE
Confidence 88877
No 479
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.32 E-value=0.8 Score=39.77 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=28.2
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
..+.+++++||--.-++......+..++..+... ..++++
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~ 151 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVI 151 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 4567899999998777766777777777766554 344444
No 480
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=90.29 E-value=0.19 Score=48.67 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 011446 158 SDILARAKNGTGKTAAF 174 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (485)
+-+++.||.|||||+.+
T Consensus 149 lgllL~GPPGcGKTllA 165 (413)
T PLN00020 149 LILGIWGGKGQGKSFQC 165 (413)
T ss_pred eEEEeeCCCCCCHHHHH
Confidence 34889999999999873
No 481
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=90.23 E-value=0.57 Score=43.72 Aligned_cols=49 Identities=22% Similarity=0.075 Sum_probs=29.6
Q ss_pred HHHHHhcC-----CCEEEEccCCCchhHHhHHHHHhhhhc---cCCceEEEEEcCcH
Q 011446 150 SIPIALTG-----SDILARAKNGTGKTAAFCIPALEKIDQ---DNNVIQVVILVPTR 198 (485)
Q Consensus 150 ~i~~i~~~-----~~~ii~~~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~P~~ 198 (485)
.++.++.| .-+=|+|+.|||||-..+..++..... .+.+.+++|+.-..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG 82 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC
Confidence 55566654 335689999999996544444433221 23345889987433
No 482
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=3.1 Score=40.41 Aligned_cols=130 Identities=12% Similarity=0.135 Sum_probs=75.3
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 236 (485)
.++++|--|+|||+.-.-.++ ++...+. ++..+| -.|+-| ++.++..+...++.+...+...+..
T Consensus 103 VimfVGLqG~GKTTtc~KlA~-y~kkkG~--K~~LvcaDTFRagA---fDQLkqnA~k~~iP~ygsyte~dpv------- 169 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAY-YYKKKGY--KVALVCADTFRAGA---FDQLKQNATKARVPFYGSYTEADPV------- 169 (483)
T ss_pred EEEEEeccCCCcceeHHHHHH-HHHhcCC--ceeEEeecccccch---HHHHHHHhHhhCCeeEecccccchH-------
Confidence 377899999999987433222 2333333 444444 455555 3444455544555543322211111
Q ss_pred CCCeEEEEcchHHHH-hhhcCccccCCcceEEeeccccccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHh
Q 011446 237 QPVHLLVGTPGRILD-LSKKGVCILKDCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~~-~~~~~~~~l~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (485)
.+.. -.. ...-.++++||+|=.-|.-. .+....+..+.+.+.++.-++.|-|++....+..+..|
T Consensus 170 -----------~ia~egv~--~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 170 -----------KIASEGVD--RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred -----------HHHHHHHH--HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 1111 011 12235789999998876533 34556677777888888888999999887777666655
No 483
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.16 E-value=1.5 Score=41.49 Aligned_cols=67 Identities=24% Similarity=0.240 Sum_probs=37.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhc--c-CCceEEEEEcCcHH-----------HHHHHHHHHHHHhccCCceEEEEE
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQ--D-NNVIQVVILVPTRE-----------LALQTSQVCKELGKHLNIQVMVTT 223 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~--~-~~~~~~lil~P~~~-----------la~q~~~~~~~~~~~~~~~v~~~~ 223 (485)
+-+++.||+|+|||.. .-++.+++.- . ....-.+|=...-. |+.++++.+.++.+.-+.-|.++.
T Consensus 178 RliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4488999999999964 4444444421 1 11112333333323 455555666666666666666655
Q ss_pred CC
Q 011446 224 GG 225 (485)
Q Consensus 224 g~ 225 (485)
..
T Consensus 257 DE 258 (423)
T KOG0744|consen 257 DE 258 (423)
T ss_pred HH
Confidence 43
No 484
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.11 E-value=0.23 Score=34.85 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHh
Q 011446 158 SDILARAKNGTGKTAAF 174 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (485)
...++.|++|+|||+.+
T Consensus 24 ~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLL 40 (62)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45999999999999863
No 485
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=89.95 E-value=1.5 Score=40.48 Aligned_cols=37 Identities=27% Similarity=0.175 Sum_probs=25.2
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhh---------ccCCceEEEEEc
Q 011446 159 DILARAKNGTGKTAAFCIPALEKID---------QDNNVIQVVILV 195 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~---------~~~~~~~~lil~ 195 (485)
-.++.||.|+|||+..+..++.... ....+.+|+|++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 3689999999999887666554321 111345788888
No 486
>CHL00176 ftsH cell division protein; Validated
Probab=89.92 E-value=1 Score=47.84 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998743
No 487
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.89 E-value=0.55 Score=45.22 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.5
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q 011446 154 ALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~~ 174 (485)
+..+.+++++|+||||||+..
T Consensus 141 v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH
Confidence 335678999999999999863
No 488
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.84 E-value=0.99 Score=44.89 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc-HHHHHHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT-RELALQTSQ 206 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~-~~la~q~~~ 206 (485)
..+.|+|.+|+|||.+. --++..+......+.++++-.+ ...+..++.
T Consensus 176 gSlYVsG~PGtgkt~~l-~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 176 GSLYVSGQPGTGKTALL-SRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred cceEeeCCCCcchHHHH-HHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 56999999999999883 3345555544445454555444 244544443
No 489
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=89.79 E-value=0.56 Score=40.98 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=27.4
Q ss_pred cCC--cceEEeeccccccCCCCHHHHHHHHHhCC-CCCcEEEEecc
Q 011446 260 LKD--CSMLVMDEADKLLSPEFQPSVEQLIRFLP-ANRQILMFSAT 302 (485)
Q Consensus 260 l~~--~~~iViDEah~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT 302 (485)
+.+ .+++++||.-.-++......+..++..+. .+.-+|+.|--
T Consensus 103 ~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 103 FSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred hhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 345 78999999987666666666666665543 24445554443
No 490
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.73 E-value=0.17 Score=44.24 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=28.1
Q ss_pred HHhcCCCeEEEEcchHHHHhhhcCcc--ccCCcceEEeeccccccC
Q 011446 233 MRLYQPVHLLVGTPGRILDLSKKGVC--ILKDCSMLVMDEADKLLS 276 (485)
Q Consensus 233 ~~~~~~~~Ili~Tp~~l~~~~~~~~~--~l~~~~~iViDEah~~~~ 276 (485)
+.....++|+|+++..|++-...... ...+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 44456789999999988763322111 123457899999998743
No 491
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=89.72 E-value=2.4 Score=44.31 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=64.4
Q ss_pred cCCCcEEEEecChhHHHHH----HHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccc-ccCCCCCCCCEE
Q 011446 355 LQINQSIIFCNSVNRVELL----AKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF-TRGIDIQAVNVV 429 (485)
Q Consensus 355 ~~~~~~lVf~~~~~~~~~l----~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~-~~Gidi~~v~~V 429 (485)
....++.+..||---|++- .+.|...++.+..+.|.+....|.++++...+|...++|.|-++ ...+++.++-+|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 3445899999996665554 45555568999999999999999999999999999999999975 779999999988
Q ss_pred E
Q 011446 430 I 430 (485)
Q Consensus 430 I 430 (485)
|
T Consensus 389 I 389 (677)
T COG1200 389 I 389 (677)
T ss_pred E
Confidence 8
No 492
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.64 E-value=0.15 Score=53.31 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=90.8
Q ss_pred CCcHHHHHHHHHHhcC--------C--CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 142 RPSPIQEESIPIALTG--------S--DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~--------~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
.+...|.+++-.+... . ..+|-...|-||-....-.+++...++ ..++|.+.-+..|--+..+.+..+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG--RKrAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG--RKRALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc--cceeEEEEeccccccchhhchhhc
Confidence 5667888888766632 2 267766677777544333345544432 238899998888876666666665
Q ss_pred hccCCceEEEEECCC--ChHHHHHHhcCCCeEEEEcchHHHHhhhcCcc--------ccC----Cc-ceEEeeccccccC
Q 011446 212 GKHLNIQVMVTTGGT--SLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC--------ILK----DC-SMLVMDEADKLLS 276 (485)
Q Consensus 212 ~~~~~~~v~~~~g~~--~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~--------~l~----~~-~~iViDEah~~~~ 276 (485)
.. .++.|..+..-. .+..+. .-.-.-.+++||+..|+-....... .+. ++ .+||+||||..-+
T Consensus 342 gA-~~I~V~alnK~KYakIss~e-n~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKN 419 (1300)
T KOG1513|consen 342 GA-TGIAVHALNKFKYAKISSKE-NTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKN 419 (1300)
T ss_pred CC-CCccceehhhcccccccccc-cCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcc
Confidence 43 335554432111 000000 0001236999999877653331100 011 11 6899999997644
Q ss_pred ---------CCCHHHHHHHHHhCCCCCcEEEEeccc
Q 011446 277 ---------PEFQPSVEQLIRFLPANRQILMFSATF 303 (485)
Q Consensus 277 ---------~~~~~~~~~i~~~~~~~~~~i~~SATl 303 (485)
...+..+..+.+.+| +.+++..|||=
T Consensus 420 L~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 420 LVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred cccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 225566777777774 67799999993
No 493
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=89.61 E-value=0.99 Score=48.23 Aligned_cols=89 Identities=17% Similarity=0.237 Sum_probs=68.8
Q ss_pred hhhhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHc-CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 011446 341 ERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF 417 (485)
Q Consensus 341 ~~~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~ 417 (485)
-..|......++... ..+.+||.+|.+.....+.+.|..+ +.++..+|+++++.+|.....+...|+.+|+|.|-.+
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA 306 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA 306 (730)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh
Confidence 334444444444432 3358999999999999998888776 7899999999999999999999999999999998853
Q ss_pred ccCCCCCCCCEEE
Q 011446 418 TRGIDIQAVNVVI 430 (485)
Q Consensus 418 ~~Gidi~~v~~VI 430 (485)
- -.-++++-.||
T Consensus 307 l-F~Pf~~LGLII 318 (730)
T COG1198 307 L-FLPFKNLGLII 318 (730)
T ss_pred h-cCchhhccEEE
Confidence 2 24566677766
No 494
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.59 E-value=0.51 Score=45.43 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=35.0
Q ss_pred CCcHHHHHHH-HHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 142 RPSPIQEESI-PIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 142 ~~~~~Q~~~i-~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
.+.+.|..-+ -++..+++++++|+||||||+. +.+++..+... .+++.+=-+.++
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~---~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPE---ERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCch---hcEEEEeccccc
Confidence 4566665444 4555678999999999999987 44444444322 256665555444
No 495
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.56 E-value=0.41 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.5
Q ss_pred HHHHHh-cCCCEEEEccCCCchhHH
Q 011446 150 SIPIAL-TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 150 ~i~~i~-~~~~~ii~~~TGsGKT~~ 173 (485)
.+..++ .++.++++||+|+|||..
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCchhHH
Confidence 344333 557799999999999987
No 496
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.53 E-value=3.2 Score=36.95 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=51.3
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----c-ccCCCCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F-TRGIDIQA 425 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gidi~~ 425 (485)
...++||.+|+...+.+.+..+... ++.+..++|+.+........ . +...|+|+|.- + ..-.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---K-RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---c-CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 3457999999999999888777665 67788899988765544332 2 56789999952 2 22366778
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+.++|
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 88877
No 497
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=1.8 Score=43.79 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=26.8
Q ss_pred CcceEEeeccccccCCC-------CHHHHHHHHHhC---CCCCcEEEEecc
Q 011446 262 DCSMLVMDEADKLLSPE-------FQPSVEQLIRFL---PANRQILMFSAT 302 (485)
Q Consensus 262 ~~~~iViDEah~~~~~~-------~~~~~~~i~~~~---~~~~~~i~~SAT 302 (485)
...+|.|||+|.+...- ....+..++..+ ..+--+|.+.||
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigAT 446 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGAT 446 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEecc
Confidence 34688999999876421 223445555444 345568999999
No 498
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=89.45 E-value=4.8 Score=44.00 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHHh
Q 011446 157 GSDILARAKNGTGKTAAF 174 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (485)
+..+++.||+|+|||+.+
T Consensus 349 g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLG 366 (784)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345899999999999763
No 499
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.31 E-value=1.1 Score=43.77 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=39.0
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhc-CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 132 LMGIFEKGFERPSPIQEESIPIALT-GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 132 ~~~l~~~~~~~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
+..+.+.|+ +.+.+.+.+..+.. +.+++++|+||||||+.. ..++..+.. ..+++++-.+.++
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~---~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAP---DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCC---CCcEEEECCccee
Confidence 444555454 45667777665554 568999999999999863 223333332 2356666666565
No 500
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=89.31 E-value=0.63 Score=49.16 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=29.4
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecc
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 302 (485)
+.+-+++++||+-.-++......+...+....++.-+|..|=.
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~ 527 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 4566889999998777777677676666666555555555444
Done!