Query 011446
Match_columns 485
No_of_seqs 327 out of 2639
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.7E-59 9.3E-64 472.4 42.1 360 117-477 53-428 (434)
2 1s2m_A Putative ATP-dependent 100.0 7.2E-57 2.5E-61 451.2 40.8 365 113-477 14-385 (400)
3 2j0s_A ATP-dependent RNA helic 100.0 1.9E-56 6.5E-61 449.6 41.4 361 118-478 35-404 (410)
4 2i4i_A ATP-dependent RNA helic 100.0 8.6E-56 2.9E-60 445.9 38.9 341 117-457 12-376 (417)
5 1xti_A Probable ATP-dependent 100.0 2E-54 6.9E-59 432.0 39.1 338 120-457 8-350 (391)
6 3eiq_A Eukaryotic initiation f 100.0 6.9E-55 2.4E-59 438.8 35.8 360 119-478 39-408 (414)
7 3fht_A ATP-dependent RNA helic 100.0 2E-53 6.9E-58 427.7 40.3 364 117-483 22-406 (412)
8 1hv8_A Putative ATP-dependent 100.0 9.9E-53 3.4E-57 415.9 41.9 353 119-477 5-365 (367)
9 3pey_A ATP-dependent RNA helic 100.0 3.3E-53 1.1E-57 423.6 38.6 334 120-457 5-349 (395)
10 3i5x_A ATP-dependent RNA helic 100.0 7E-53 2.4E-57 440.7 34.9 330 127-456 79-441 (563)
11 1fuu_A Yeast initiation factor 100.0 2.2E-54 7.6E-59 432.1 22.3 338 119-457 20-359 (394)
12 3fmp_B ATP-dependent RNA helic 100.0 9.8E-54 3.3E-58 438.3 21.3 337 118-457 90-439 (479)
13 3sqw_A ATP-dependent RNA helic 100.0 4.3E-52 1.5E-56 435.1 33.6 331 127-457 28-391 (579)
14 2z0m_A 337AA long hypothetical 100.0 1.4E-50 4.8E-55 395.8 36.2 316 127-457 1-316 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1E-50 3.5E-55 421.4 35.3 324 122-456 23-366 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 2.9E-50 9.8E-55 414.1 32.9 321 121-456 3-335 (523)
17 3fho_A ATP-dependent RNA helic 100.0 1.2E-50 4E-55 417.0 19.6 357 121-481 120-495 (508)
18 3oiy_A Reverse gyrase helicase 100.0 1E-47 3.4E-52 386.5 25.7 303 131-453 10-350 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 2.5E-46 8.5E-51 401.2 32.8 322 120-452 8-394 (715)
20 3l9o_A ATP-dependent RNA helic 100.0 1.3E-46 4.3E-51 414.2 26.0 318 120-452 162-583 (1108)
21 2zj8_A DNA helicase, putative 100.0 3E-46 1E-50 400.4 28.0 319 121-452 2-373 (720)
22 2p6r_A Afuhel308 helicase; pro 100.0 1.4E-46 4.8E-51 401.8 23.3 321 121-452 2-374 (702)
23 2ykg_A Probable ATP-dependent 100.0 1.1E-45 3.8E-50 395.9 20.2 318 133-451 4-504 (696)
24 4a2p_A RIG-I, retinoic acid in 100.0 2.4E-44 8.3E-49 375.7 27.6 311 140-451 5-496 (556)
25 2xgj_A ATP-dependent RNA helic 100.0 3E-43 1E-47 384.3 33.8 300 138-453 83-486 (1010)
26 4ddu_A Reverse gyrase; topoiso 100.0 3.9E-44 1.3E-48 394.3 26.9 279 138-436 75-388 (1104)
27 3tbk_A RIG-I helicase domain; 100.0 7.9E-44 2.7E-48 371.7 24.8 308 142-451 4-495 (555)
28 4a2q_A RIG-I, retinoic acid in 100.0 4.7E-43 1.6E-47 379.2 28.2 313 138-451 244-737 (797)
29 4a4z_A Antiviral helicase SKI2 100.0 7.5E-43 2.6E-47 381.1 28.9 296 142-452 39-478 (997)
30 1wp9_A ATP-dependent RNA helic 100.0 9.3E-43 3.2E-47 357.3 27.7 308 142-453 9-465 (494)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 1.2E-43 4.2E-48 390.8 22.2 280 133-435 48-352 (1054)
32 4gl2_A Interferon-induced heli 100.0 7.9E-44 2.7E-48 381.7 17.8 313 142-455 7-512 (699)
33 1tf5_A Preprotein translocase 100.0 1.7E-42 5.8E-47 360.0 26.6 311 137-457 79-538 (844)
34 4a2w_A RIG-I, retinoic acid in 100.0 3.9E-42 1.3E-46 375.8 27.1 313 138-451 244-737 (936)
35 4f92_B U5 small nuclear ribonu 100.0 8.2E-42 2.8E-46 388.3 30.2 322 126-453 910-1295(1724)
36 2fsf_A Preprotein translocase 100.0 1.4E-40 4.8E-45 344.7 24.4 309 139-457 72-576 (853)
37 1gm5_A RECG; helicase, replica 100.0 5.7E-41 1.9E-45 355.5 21.1 309 130-456 356-689 (780)
38 4f92_B U5 small nuclear ribonu 100.0 2.6E-40 8.9E-45 376.0 27.5 309 139-452 76-459 (1724)
39 2eyq_A TRCF, transcription-rep 100.0 2.2E-39 7.4E-44 358.9 33.6 315 125-457 586-915 (1151)
40 2oca_A DAR protein, ATP-depend 100.0 7.4E-41 2.5E-45 345.5 19.2 301 142-455 113-446 (510)
41 2xau_A PRE-mRNA-splicing facto 100.0 3.6E-40 1.2E-44 351.6 24.1 321 117-451 69-431 (773)
42 1nkt_A Preprotein translocase 100.0 5.1E-39 1.8E-43 333.3 30.6 310 138-457 108-610 (922)
43 2jlq_A Serine protease subunit 100.0 5.1E-41 1.7E-45 339.8 15.3 277 139-453 1-299 (451)
44 2fwr_A DNA repair protein RAD2 100.0 3.9E-40 1.3E-44 336.8 17.2 281 142-454 93-441 (472)
45 2whx_A Serine protease/ntpase/ 100.0 5.3E-41 1.8E-45 349.6 8.8 291 125-453 155-466 (618)
46 3o8b_A HCV NS3 protease/helica 100.0 3.7E-39 1.3E-43 332.6 14.3 268 142-456 217-507 (666)
47 1yks_A Genome polyprotein [con 100.0 1E-39 3.4E-44 328.8 4.4 254 153-451 4-285 (440)
48 2wv9_A Flavivirin protease NS2 100.0 1.3E-39 4.4E-44 341.2 5.2 284 134-454 202-523 (673)
49 2z83_A Helicase/nucleoside tri 100.0 7.5E-39 2.6E-43 324.4 8.9 269 148-453 12-301 (459)
50 3fe2_A Probable ATP-dependent 100.0 3.1E-36 1.1E-40 279.9 23.1 208 117-324 26-238 (242)
51 2v6i_A RNA helicase; membrane, 100.0 6.1E-37 2.1E-41 307.9 19.0 260 157-453 2-279 (431)
52 1vec_A ATP-dependent RNA helic 100.0 1.3E-35 4.3E-40 269.0 25.5 202 120-321 3-205 (206)
53 3rc3_A ATP-dependent RNA helic 100.0 3.4E-36 1.2E-40 314.2 23.8 286 128-454 130-432 (677)
54 3h1t_A Type I site-specific re 100.0 2.4E-36 8E-41 317.0 20.0 297 142-453 178-545 (590)
55 3ber_A Probable ATP-dependent 100.0 3.7E-35 1.3E-39 273.4 24.0 205 119-323 42-247 (249)
56 2oxc_A Probable ATP-dependent 100.0 4.2E-35 1.4E-39 270.1 23.6 211 112-323 16-228 (230)
57 1q0u_A Bstdead; DEAD protein, 100.0 1.4E-35 4.9E-40 271.2 20.0 205 120-324 4-212 (219)
58 3bor_A Human initiation factor 100.0 3.2E-35 1.1E-39 272.2 21.4 205 119-323 29-234 (237)
59 3iuy_A Probable ATP-dependent 100.0 3.8E-35 1.3E-39 270.2 21.7 205 117-322 16-227 (228)
60 1qde_A EIF4A, translation init 100.0 1.8E-34 6E-39 265.0 23.3 205 119-324 13-217 (224)
61 3fmo_B ATP-dependent RNA helic 100.0 8.3E-35 2.8E-39 278.1 21.3 205 117-324 89-298 (300)
62 2pl3_A Probable ATP-dependent 100.0 3.9E-34 1.4E-38 264.8 23.5 205 119-324 24-233 (236)
63 2gxq_A Heat resistant RNA depe 100.0 5.5E-34 1.9E-38 258.4 23.1 201 121-323 2-205 (207)
64 3ly5_A ATP-dependent RNA helic 100.0 3.1E-34 1.1E-38 269.2 21.2 201 120-320 52-259 (262)
65 1wrb_A DJVLGB; RNA helicase, D 100.0 2.3E-34 7.8E-39 269.3 20.3 207 118-324 21-240 (253)
66 1t6n_A Probable ATP-dependent 100.0 4.3E-34 1.5E-38 261.7 21.2 205 118-322 12-219 (220)
67 3dmq_A RNA polymerase-associat 100.0 2.1E-34 7.3E-39 315.2 21.8 309 142-456 153-605 (968)
68 1z63_A Helicase of the SNF2/RA 100.0 5.2E-33 1.8E-37 286.1 27.2 300 142-457 37-444 (500)
69 3dkp_A Probable ATP-dependent 100.0 1E-32 3.5E-37 256.8 18.1 206 120-325 25-242 (245)
70 3jux_A Protein translocase sub 100.0 2.4E-31 8.1E-36 270.3 27.4 307 139-457 73-580 (822)
71 1z3i_X Similar to RAD54-like; 100.0 1.8E-30 6E-35 273.5 31.1 307 142-455 55-517 (644)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.2E-31 7.6E-36 289.1 24.1 299 142-453 271-694 (1038)
73 3mwy_W Chromo domain-containin 100.0 2.8E-31 9.5E-36 286.5 23.7 308 142-457 236-675 (800)
74 2ipc_A Preprotein translocase 100.0 4.7E-27 1.6E-31 243.1 27.9 130 138-275 76-215 (997)
75 1c4o_A DNA nucleotide excision 99.9 9.6E-26 3.3E-30 237.2 28.4 97 356-452 438-539 (664)
76 2rb4_A ATP-dependent RNA helic 99.9 2.6E-25 8.9E-30 195.3 17.5 158 328-485 4-175 (175)
77 2hjv_A ATP-dependent RNA helic 99.9 5.7E-25 2E-29 190.7 18.8 147 327-473 5-158 (163)
78 2d7d_A Uvrabc system protein B 99.9 1.1E-24 3.8E-29 229.0 23.9 106 346-451 433-544 (661)
79 1t5i_A C_terminal domain of A 99.9 1E-24 3.6E-29 190.6 17.9 149 329-477 3-159 (172)
80 1fuk_A Eukaryotic initiation f 99.9 2.9E-24 9.9E-29 186.7 17.2 148 330-477 2-157 (165)
81 2p6n_A ATP-dependent RNA helic 99.9 1.8E-24 6.1E-29 192.1 15.4 145 311-456 8-153 (191)
82 3eaq_A Heat resistant RNA depe 99.9 4.8E-24 1.7E-28 193.0 18.1 145 333-477 7-158 (212)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 1E-23 3.6E-28 186.4 16.4 130 328-457 16-146 (185)
84 3b6e_A Interferon-induced heli 99.9 1.7E-24 6E-29 196.9 10.4 163 139-302 30-216 (216)
85 3i32_A Heat resistant RNA depe 99.9 1.6E-23 5.5E-28 198.4 17.1 146 332-477 3-155 (300)
86 3llm_A ATP-dependent RNA helic 99.9 3.4E-23 1.2E-27 190.8 14.1 174 135-319 54-232 (235)
87 2yjt_D ATP-dependent RNA helic 99.8 1.4E-24 4.8E-29 189.7 0.0 127 331-457 3-130 (170)
88 2vl7_A XPD; helicase, unknown 99.9 2.6E-22 9E-27 206.9 11.9 271 139-436 5-463 (540)
89 1rif_A DAR protein, DNA helica 99.9 6E-22 2E-26 187.8 12.7 154 142-307 113-266 (282)
90 3crv_A XPD/RAD3 related DNA he 99.8 1.2E-18 4.1E-23 180.3 26.6 129 142-276 3-187 (551)
91 2fz4_A DNA repair protein RAD2 99.8 7.3E-19 2.5E-23 161.7 16.1 138 141-305 92-230 (237)
92 4a15_A XPD helicase, ATP-depen 99.7 5.1E-17 1.8E-21 169.4 19.7 82 142-225 3-88 (620)
93 1z5z_A Helicase of the SNF2/RA 99.7 7E-18 2.4E-22 157.8 11.8 118 339-456 92-214 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 6.1E-09 2.1E-13 108.4 12.6 146 144-302 151-298 (608)
95 3upu_A ATP-dependent DNA helic 98.6 5.4E-06 1.8E-10 83.4 20.8 136 136-300 19-162 (459)
96 4b3f_X DNA-binding protein smu 98.3 9.7E-07 3.3E-11 92.8 9.0 66 142-210 189-255 (646)
97 3e1s_A Exodeoxyribonuclease V, 98.3 3.4E-06 1.2E-10 86.9 12.5 122 142-301 189-314 (574)
98 2gk6_A Regulator of nonsense t 98.2 1.4E-05 4.8E-10 83.5 15.0 69 140-210 178-246 (624)
99 2xzl_A ATP-dependent helicase 98.2 1E-05 3.4E-10 86.6 12.5 69 141-211 359-427 (802)
100 3lfu_A DNA helicase II; SF1 he 98.1 0.00018 6.1E-09 75.7 20.2 70 141-212 8-78 (647)
101 2wjy_A Regulator of nonsense t 98.1 3.4E-05 1.2E-09 82.4 14.4 68 141-210 355-422 (800)
102 3hgt_A HDA1 complex subunit 3; 97.5 0.00043 1.5E-08 64.8 10.1 109 339-452 105-221 (328)
103 2o0j_A Terminase, DNA packagin 97.5 0.0011 3.9E-08 64.1 13.5 73 142-215 163-235 (385)
104 2orw_A Thymidine kinase; TMTK, 97.4 0.00044 1.5E-08 60.0 8.0 39 157-198 3-41 (184)
105 3vkw_A Replicase large subunit 97.3 0.0011 3.9E-08 65.0 10.1 107 159-302 163-269 (446)
106 3cpe_A Terminase, DNA packagin 97.2 0.0042 1.4E-07 64.3 14.3 74 142-216 163-236 (592)
107 1xx6_A Thymidine kinase; NESG, 97.2 0.00061 2.1E-08 59.3 6.7 39 157-198 8-46 (191)
108 3ec2_A DNA replication protein 97.2 0.001 3.5E-08 57.3 7.9 20 156-175 37-56 (180)
109 2b8t_A Thymidine kinase; deoxy 97.1 0.00076 2.6E-08 60.2 7.0 90 157-274 12-101 (223)
110 2j9r_A Thymidine kinase; TK1, 97.0 0.00092 3.2E-08 58.8 6.3 38 159-199 30-67 (214)
111 3te6_A Regulatory protein SIR3 96.9 0.0054 1.8E-07 57.8 10.9 24 158-182 46-69 (318)
112 2orv_A Thymidine kinase; TP4A 96.8 0.0061 2.1E-07 54.1 9.4 40 157-199 19-58 (234)
113 2kjq_A DNAA-related protein; s 96.7 0.00077 2.6E-08 56.2 2.9 20 156-175 35-54 (149)
114 3n70_A Transport activator; si 96.6 0.0057 2E-07 50.5 8.0 21 155-175 22-42 (145)
115 2chg_A Replication factor C sm 96.6 0.016 5.4E-07 51.1 11.5 41 261-302 101-141 (226)
116 3e2i_A Thymidine kinase; Zn-bi 96.6 0.0038 1.3E-07 54.8 6.7 40 157-199 28-67 (219)
117 1l8q_A Chromosomal replication 96.6 0.0074 2.5E-07 57.3 9.4 18 158-175 38-55 (324)
118 1a5t_A Delta prime, HOLB; zinc 96.5 0.0043 1.5E-07 59.3 6.9 35 143-177 3-44 (334)
119 1uaa_A REP helicase, protein ( 96.5 0.0034 1.2E-07 66.1 6.7 80 142-223 2-85 (673)
120 3bos_A Putative DNA replicatio 96.5 0.0045 1.5E-07 55.7 6.7 19 157-175 52-70 (242)
121 3kl4_A SRP54, signal recogniti 96.5 0.016 5.4E-07 57.0 10.9 131 159-315 99-235 (433)
122 2zpa_A Uncharacterized protein 96.4 0.0072 2.4E-07 62.4 8.5 112 142-303 175-288 (671)
123 3u61_B DNA polymerase accessor 96.3 0.016 5.6E-07 54.8 10.1 41 261-301 104-144 (324)
124 2v1u_A Cell division control p 96.3 0.009 3.1E-07 58.0 8.2 19 157-175 44-62 (387)
125 1w4r_A Thymidine kinase; type 96.3 0.0082 2.8E-07 51.9 6.9 38 157-197 20-57 (195)
126 3co5_A Putative two-component 96.2 0.005 1.7E-07 50.7 5.1 20 154-173 24-43 (143)
127 2w58_A DNAI, primosome compone 96.2 0.012 4.1E-07 51.5 7.9 18 158-175 55-72 (202)
128 3u4q_A ATP-dependent helicase/ 96.1 0.009 3.1E-07 67.3 8.0 67 142-210 10-79 (1232)
129 1pjr_A PCRA; DNA repair, DNA r 96.1 0.012 4.3E-07 62.3 8.6 70 141-212 10-80 (724)
130 2z4s_A Chromosomal replication 96.0 0.015 5.2E-07 57.7 8.4 18 158-175 131-148 (440)
131 1d2n_A N-ethylmaleimide-sensit 95.9 0.03 1E-06 51.5 9.5 18 158-175 65-82 (272)
132 2qby_B CDC6 homolog 3, cell di 95.8 0.012 4.1E-07 57.1 6.6 18 158-175 46-63 (384)
133 2p65_A Hypothetical protein PF 95.8 0.051 1.8E-06 46.2 10.1 19 157-175 43-61 (187)
134 3syl_A Protein CBBX; photosynt 95.8 0.0083 2.8E-07 56.4 5.0 18 158-175 68-85 (309)
135 1iqp_A RFCS; clamp loader, ext 95.7 0.064 2.2E-06 50.5 11.1 40 261-301 109-148 (327)
136 3dm5_A SRP54, signal recogniti 95.6 0.14 4.8E-06 50.3 13.1 131 159-315 102-236 (443)
137 1jbk_A CLPB protein; beta barr 95.6 0.21 7.1E-06 42.4 13.0 18 158-175 44-61 (195)
138 3pfi_A Holliday junction ATP-d 95.5 0.087 3E-06 50.0 11.3 18 158-175 56-73 (338)
139 1sxj_E Activator 1 40 kDa subu 95.5 0.029 1E-06 53.8 7.8 43 260-303 132-174 (354)
140 1fnn_A CDC6P, cell division co 95.5 0.014 4.7E-07 56.7 5.5 17 159-175 46-62 (389)
141 3h4m_A Proteasome-activating n 95.4 0.038 1.3E-06 51.1 8.2 56 118-175 12-69 (285)
142 1g5t_A COB(I)alamin adenosyltr 95.4 0.065 2.2E-06 46.3 8.9 136 158-312 29-172 (196)
143 2qby_A CDC6 homolog 1, cell di 95.4 0.021 7.3E-07 55.2 6.5 19 157-175 45-63 (386)
144 1sxj_D Activator 1 41 kDa subu 95.3 0.028 9.7E-07 53.7 7.0 40 261-301 132-171 (353)
145 2gno_A DNA polymerase III, gam 95.2 0.042 1.4E-06 51.5 7.6 40 260-300 80-119 (305)
146 2qgz_A Helicase loader, putati 95.2 0.094 3.2E-06 49.2 10.0 20 157-176 152-171 (308)
147 1jr3_A DNA polymerase III subu 95.2 0.074 2.5E-06 51.2 9.6 17 159-175 40-56 (373)
148 1sxj_C Activator 1 40 kDa subu 95.1 0.11 3.7E-06 49.5 10.4 39 261-300 109-147 (340)
149 1njg_A DNA polymerase III subu 95.0 0.13 4.5E-06 45.6 10.2 17 159-175 47-63 (250)
150 1sxj_A Activator 1 95 kDa subu 94.6 0.2 6.7E-06 50.8 11.3 41 261-303 147-189 (516)
151 3vfd_A Spastin; ATPase, microt 94.5 0.091 3.1E-06 51.1 8.3 19 157-175 148-166 (389)
152 1gm5_A RECG; helicase, replica 94.4 0.16 5.5E-06 53.9 10.3 74 357-430 417-495 (780)
153 2dr3_A UPF0273 protein PH0284; 94.3 0.17 5.9E-06 45.3 9.2 37 156-195 22-58 (247)
154 1sxj_B Activator 1 37 kDa subu 94.3 0.07 2.4E-06 50.1 6.7 39 262-301 107-145 (323)
155 3eie_A Vacuolar protein sortin 94.0 0.07 2.4E-06 50.4 6.1 51 119-175 14-69 (322)
156 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.23 7.8E-06 44.0 9.3 23 156-178 22-44 (235)
157 1xwi_A SKD1 protein; VPS4B, AA 94.0 0.074 2.5E-06 50.3 6.1 18 158-175 46-63 (322)
158 3k1j_A LON protease, ATP-depen 93.9 0.59 2E-05 48.3 13.3 23 153-175 56-78 (604)
159 2px0_A Flagellar biosynthesis 93.9 0.29 9.8E-06 45.5 9.9 116 157-304 105-225 (296)
160 1w5s_A Origin recognition comp 93.8 0.083 2.8E-06 51.6 6.4 18 158-175 51-70 (412)
161 2chq_A Replication factor C sm 93.7 0.042 1.4E-06 51.6 3.9 17 159-175 40-56 (319)
162 3pvs_A Replication-associated 93.4 0.095 3.2E-06 52.0 6.1 18 158-175 51-68 (447)
163 1hqc_A RUVB; extended AAA-ATPa 93.4 0.22 7.4E-06 46.8 8.4 18 158-175 39-56 (324)
164 2qp9_X Vacuolar protein sortin 93.4 0.13 4.5E-06 49.3 6.8 18 158-175 85-102 (355)
165 2zan_A Vacuolar protein sortin 93.2 0.15 5E-06 50.6 7.0 55 118-175 129-185 (444)
166 3oiy_A Reverse gyrase helicase 92.9 0.4 1.4E-05 46.8 9.7 76 356-431 63-145 (414)
167 1ls1_A Signal recognition part 92.8 0.37 1.3E-05 44.8 8.7 49 261-309 179-228 (295)
168 3hu3_A Transitional endoplasmi 92.7 0.29 9.8E-06 49.1 8.4 18 158-175 239-256 (489)
169 1vma_A Cell division protein F 92.6 0.9 3.1E-05 42.3 11.1 19 158-176 105-123 (306)
170 3e70_C DPA, signal recognition 91.9 0.96 3.3E-05 42.6 10.5 54 262-315 211-265 (328)
171 1n0w_A DNA repair protein RAD5 91.8 0.78 2.7E-05 40.8 9.5 25 156-180 23-47 (243)
172 2r6a_A DNAB helicase, replicat 91.6 0.4 1.4E-05 47.6 7.9 37 157-195 203-239 (454)
173 1nlf_A Regulatory protein REPA 91.5 0.38 1.3E-05 44.2 7.1 26 154-179 27-52 (279)
174 2fna_A Conserved hypothetical 91.3 3.4 0.00012 38.8 14.1 38 263-301 138-178 (357)
175 2ehv_A Hypothetical protein PH 91.0 0.29 9.9E-06 43.9 5.7 23 156-178 29-51 (251)
176 2eyq_A TRCF, transcription-rep 91.0 0.91 3.1E-05 50.6 10.6 75 356-430 651-730 (1151)
177 2v3c_C SRP54, signal recogniti 90.8 0.27 9.2E-06 48.4 5.6 35 158-195 100-134 (432)
178 3ber_A Probable ATP-dependent 90.4 2.2 7.6E-05 38.2 11.1 72 356-431 110-192 (249)
179 2q6t_A DNAB replication FORK h 90.4 0.58 2E-05 46.2 7.8 37 157-195 200-236 (444)
180 2hjv_A ATP-dependent RNA helic 90.2 1.1 3.6E-05 37.3 8.1 73 189-271 36-112 (163)
181 1t6n_A Probable ATP-dependent 89.8 1.6 5.5E-05 38.1 9.4 71 358-431 83-164 (220)
182 3jvv_A Twitching mobility prot 89.7 0.48 1.6E-05 45.2 6.2 18 157-174 123-140 (356)
183 1qvr_A CLPB protein; coiled co 89.7 1.1 3.8E-05 48.3 9.8 19 158-176 192-210 (854)
184 3cmu_A Protein RECA, recombina 89.3 0.57 1.9E-05 54.5 7.4 38 157-197 1427-1464(2050)
185 2ffh_A Protein (FFH); SRP54, s 89.3 2.2 7.4E-05 41.7 10.6 41 158-201 99-141 (425)
186 3pxi_A Negative regulator of g 89.3 1 3.4E-05 47.9 8.9 17 159-175 523-539 (758)
187 3lda_A DNA repair protein RAD5 89.0 1.5 5.3E-05 42.4 9.3 40 157-196 178-220 (400)
188 2v1x_A ATP-dependent DNA helic 88.7 1.3 4.6E-05 45.4 9.1 60 356-415 83-144 (591)
189 2rb4_A ATP-dependent RNA helic 88.5 2.7 9.3E-05 35.2 9.6 73 188-270 34-110 (175)
190 2l8b_A Protein TRAI, DNA helic 88.1 0.41 1.4E-05 40.5 3.9 55 145-201 37-93 (189)
191 1j8m_F SRP54, signal recogniti 88.1 2.5 8.6E-05 39.1 9.7 21 158-178 99-119 (297)
192 3b85_A Phosphate starvation-in 88.0 0.57 2E-05 40.9 5.1 36 140-175 5-40 (208)
193 3fe2_A Probable ATP-dependent 88.0 2.7 9.3E-05 37.3 9.8 71 357-431 102-182 (242)
194 4ddu_A Reverse gyrase; topoiso 88.0 1.5 5.1E-05 48.6 9.4 76 356-431 120-202 (1104)
195 2oxc_A Probable ATP-dependent 87.9 1.5 5.1E-05 38.7 7.9 69 357-430 92-171 (230)
196 1oyw_A RECQ helicase, ATP-depe 87.9 1.3 4.3E-05 44.9 8.2 59 357-415 65-123 (523)
197 1fuk_A Eukaryotic initiation f 87.4 3.7 0.00013 34.0 9.7 72 189-270 31-106 (165)
198 4a1f_A DNAB helicase, replicat 87.4 0.4 1.4E-05 45.4 3.8 36 157-195 46-81 (338)
199 1p9r_A General secretion pathw 87.4 0.94 3.2E-05 44.2 6.6 16 158-173 168-183 (418)
200 2p6n_A ATP-dependent RNA helic 87.1 4.8 0.00016 34.3 10.4 72 189-270 55-130 (191)
201 3eaq_A Heat resistant RNA depe 87.0 3.1 0.0001 36.2 9.2 70 189-268 32-105 (212)
202 1t5i_A C_terminal domain of A 86.9 3.2 0.00011 34.7 9.0 73 189-271 32-108 (172)
203 3cf2_A TER ATPase, transitiona 86.5 0.46 1.6E-05 50.4 4.1 99 158-302 239-347 (806)
204 2jgn_A DBX, DDX3, ATP-dependen 86.5 2.2 7.6E-05 36.3 7.8 88 167-268 29-120 (185)
205 1ypw_A Transitional endoplasmi 86.3 2.3 8E-05 45.4 9.5 18 157-174 238-255 (806)
206 2oap_1 GSPE-2, type II secreti 86.2 0.65 2.2E-05 46.7 4.8 30 144-173 246-276 (511)
207 2j37_W Signal recognition part 86.1 5.4 0.00019 39.8 11.5 41 159-202 103-145 (504)
208 4b4t_M 26S protease regulatory 86.0 0.4 1.4E-05 47.0 3.1 57 115-174 173-232 (434)
209 3bor_A Human initiation factor 85.0 2.2 7.5E-05 37.8 7.4 72 357-431 98-179 (237)
210 1kgd_A CASK, peripheral plasma 85.0 0.46 1.6E-05 40.3 2.7 20 156-175 4-23 (180)
211 1vec_A ATP-dependent RNA helic 84.8 4.1 0.00014 34.8 9.0 69 358-430 72-151 (206)
212 3hjh_A Transcription-repair-co 84.3 3.6 0.00012 40.9 9.2 74 346-432 372-445 (483)
213 2gza_A Type IV secretion syste 84.1 0.63 2.1E-05 44.6 3.5 21 154-174 172-192 (361)
214 1xti_A Probable ATP-dependent 84.1 3.8 0.00013 39.1 9.2 72 357-431 76-158 (391)
215 2gxq_A Heat resistant RNA depe 83.8 5 0.00017 34.3 9.1 71 357-431 72-150 (207)
216 1e9r_A Conjugal transfer prote 83.8 0.69 2.4E-05 45.6 3.7 43 156-201 52-94 (437)
217 2ewv_A Twitching motility prot 83.7 0.66 2.3E-05 44.6 3.5 19 156-174 135-153 (372)
218 2eyu_A Twitching motility prot 83.6 0.45 1.5E-05 43.3 2.1 20 155-174 23-42 (261)
219 2pl3_A Probable ATP-dependent 83.5 5.7 0.0002 34.9 9.5 70 357-431 97-177 (236)
220 3vaa_A Shikimate kinase, SK; s 83.5 0.61 2.1E-05 40.3 2.9 20 156-175 24-43 (199)
221 1ofh_A ATP-dependent HSL prote 83.5 2.3 7.9E-05 39.2 7.1 19 157-175 50-68 (310)
222 3iuy_A Probable ATP-dependent 83.5 3.8 0.00013 35.8 8.3 72 356-431 93-173 (228)
223 4f4c_A Multidrug resistance pr 83.4 0.7 2.4E-05 52.3 4.0 41 260-300 1233-1273(1321)
224 1lvg_A Guanylate kinase, GMP k 83.2 0.66 2.3E-05 40.1 3.0 20 156-175 3-22 (198)
225 3a8t_A Adenylate isopentenyltr 83.0 0.59 2E-05 44.0 2.7 17 159-175 42-58 (339)
226 3i5x_A ATP-dependent RNA helic 82.8 13 0.00043 37.6 13.0 87 178-271 329-419 (563)
227 4b4t_J 26S protease regulatory 82.7 1.1 3.7E-05 43.4 4.4 57 115-174 140-199 (405)
228 3tau_A Guanylate kinase, GMP k 82.5 0.69 2.4E-05 40.3 2.9 20 156-175 7-26 (208)
229 2xxa_A Signal recognition part 82.2 6 0.0002 38.7 9.7 43 159-203 102-146 (433)
230 2pt7_A CAG-ALFA; ATPase, prote 82.1 0.65 2.2E-05 43.9 2.7 20 154-173 168-187 (330)
231 4b4t_H 26S protease regulatory 82.1 0.9 3.1E-05 44.7 3.7 56 116-174 202-260 (467)
232 3trf_A Shikimate kinase, SK; a 82.0 0.75 2.6E-05 39.0 2.8 20 157-176 5-24 (185)
233 2zts_A Putative uncharacterize 81.9 1 3.5E-05 40.1 3.9 37 157-195 30-66 (251)
234 2qmh_A HPR kinase/phosphorylas 81.8 0.65 2.2E-05 40.1 2.3 17 157-173 34-50 (205)
235 3exa_A TRNA delta(2)-isopenten 81.7 0.72 2.4E-05 43.0 2.7 17 159-175 5-21 (322)
236 2bjv_A PSP operon transcriptio 81.6 2.2 7.6E-05 38.5 6.1 20 156-175 28-47 (265)
237 3lw7_A Adenylate kinase relate 81.5 0.6 2.1E-05 38.9 2.0 17 159-175 3-19 (179)
238 2ze6_A Isopentenyl transferase 81.5 0.73 2.5E-05 41.6 2.7 16 160-175 4-19 (253)
239 3foz_A TRNA delta(2)-isopenten 81.2 0.76 2.6E-05 42.7 2.7 17 159-175 12-28 (316)
240 4akg_A Glutathione S-transfera 81.2 3.1 0.00011 50.1 8.4 69 127-198 890-964 (2695)
241 1qde_A EIF4A, translation init 80.9 2.6 9E-05 36.7 6.2 69 357-430 82-160 (224)
242 1lv7_A FTSH; alpha/beta domain 80.9 2.5 8.5E-05 37.9 6.1 18 158-175 46-63 (257)
243 3cf0_A Transitional endoplasmi 80.8 0.68 2.3E-05 43.1 2.3 56 119-175 11-67 (301)
244 3tr0_A Guanylate kinase, GMP k 80.8 0.83 2.8E-05 39.4 2.7 20 156-175 6-25 (205)
245 3iij_A Coilin-interacting nucl 80.7 0.76 2.6E-05 38.8 2.4 20 156-175 10-29 (180)
246 2ius_A DNA translocase FTSK; n 80.7 1.7 5.7E-05 43.6 5.2 27 156-182 166-192 (512)
247 3hws_A ATP-dependent CLP prote 80.7 2.5 8.4E-05 40.3 6.3 20 156-175 50-69 (363)
248 2qor_A Guanylate kinase; phosp 80.7 0.82 2.8E-05 39.6 2.6 21 155-175 10-30 (204)
249 4b4t_L 26S protease subunit RP 80.6 0.92 3.2E-05 44.5 3.2 57 115-174 173-232 (437)
250 3sqw_A ATP-dependent RNA helic 80.6 19 0.00063 36.6 13.3 87 179-272 279-369 (579)
251 3ney_A 55 kDa erythrocyte memb 80.5 0.94 3.2E-05 39.1 2.9 20 156-175 18-37 (197)
252 3nbx_X ATPase RAVA; AAA+ ATPas 80.4 0.92 3.1E-05 45.4 3.2 27 148-174 32-58 (500)
253 3ly5_A ATP-dependent RNA helic 80.3 8.9 0.0003 34.4 9.6 71 357-431 126-207 (262)
254 1qhx_A CPT, protein (chloramph 80.3 0.74 2.5E-05 38.7 2.2 18 158-175 4-21 (178)
255 2j41_A Guanylate kinase; GMP, 80.2 0.88 3E-05 39.3 2.7 20 156-175 5-24 (207)
256 1zp6_A Hypothetical protein AT 80.2 0.65 2.2E-05 39.6 1.8 19 156-174 8-26 (191)
257 1wrb_A DJVLGB; RNA helicase, D 80.1 6.7 0.00023 34.9 8.8 69 358-430 101-179 (253)
258 3a00_A Guanylate kinase, GMP k 80.1 1.1 3.6E-05 38.3 3.1 17 158-174 2-18 (186)
259 1kag_A SKI, shikimate kinase I 80.0 1.1 3.7E-05 37.5 3.1 19 157-175 4-22 (173)
260 4ag6_A VIRB4 ATPase, type IV s 79.9 1.6 5.3E-05 42.3 4.6 42 156-200 34-75 (392)
261 2r44_A Uncharacterized protein 79.9 1 3.4E-05 42.4 3.2 24 152-175 41-64 (331)
262 2cvh_A DNA repair and recombin 79.5 0.86 3E-05 39.7 2.4 33 157-195 20-52 (220)
263 4b4t_I 26S protease regulatory 79.4 1.2 4E-05 43.4 3.5 58 114-174 173-233 (437)
264 1z6g_A Guanylate kinase; struc 79.3 1.2 3.9E-05 39.2 3.2 20 155-174 21-40 (218)
265 4gp7_A Metallophosphoesterase; 79.0 0.72 2.4E-05 38.8 1.6 20 156-175 8-27 (171)
266 4b4t_K 26S protease regulatory 79.0 1.1 3.8E-05 43.8 3.2 56 116-174 165-223 (428)
267 3vkg_A Dynein heavy chain, cyt 78.9 3.8 0.00013 50.1 8.1 76 127-205 873-954 (3245)
268 1znw_A Guanylate kinase, GMP k 78.7 0.89 3E-05 39.5 2.2 22 153-174 16-37 (207)
269 3crm_A TRNA delta(2)-isopenten 78.6 1 3.5E-05 42.2 2.7 17 159-175 7-23 (323)
270 3kb2_A SPBC2 prophage-derived 78.5 1.1 3.8E-05 37.2 2.7 17 159-175 3-19 (173)
271 1ex7_A Guanylate kinase; subst 78.3 1 3.5E-05 38.5 2.4 16 158-173 2-17 (186)
272 2db3_A ATP-dependent RNA helic 78.1 9.3 0.00032 37.3 9.7 69 358-430 130-208 (434)
273 1y63_A LMAJ004144AAA protein; 78.0 1.2 4.2E-05 37.8 2.8 19 157-175 10-28 (184)
274 3p32_A Probable GTPase RV1496/ 77.9 28 0.00097 32.7 12.8 18 159-176 81-98 (355)
275 3uk6_A RUVB-like 2; hexameric 77.8 2.3 8E-05 40.4 5.1 18 158-175 71-88 (368)
276 3bh0_A DNAB-like replicative h 77.8 1.8 6.2E-05 40.4 4.2 37 156-195 67-103 (315)
277 4f4c_A Multidrug resistance pr 77.8 0.73 2.5E-05 52.2 1.7 41 260-300 570-610 (1321)
278 2i1q_A DNA repair and recombin 77.7 2.9 9.8E-05 39.1 5.6 24 157-180 98-121 (322)
279 1ly1_A Polynucleotide kinase; 77.5 1.2 4.2E-05 37.3 2.7 16 160-175 5-20 (181)
280 3i32_A Heat resistant RNA depe 77.4 7 0.00024 36.1 8.1 74 188-271 28-105 (300)
281 1ojl_A Transcriptional regulat 77.3 2.5 8.4E-05 39.3 4.9 20 156-175 24-43 (304)
282 3b5x_A Lipid A export ATP-bind 77.1 3.3 0.00011 42.4 6.3 41 260-301 496-536 (582)
283 2qz4_A Paraplegin; AAA+, SPG7, 76.8 1.3 4.4E-05 39.8 2.8 18 158-175 40-57 (262)
284 1um8_A ATP-dependent CLP prote 76.8 4.6 0.00016 38.6 6.9 19 157-175 72-90 (376)
285 1nij_A Hypothetical protein YJ 76.8 1.7 5.8E-05 40.7 3.7 15 160-174 7-21 (318)
286 3d3q_A TRNA delta(2)-isopenten 76.7 1.3 4.3E-05 41.9 2.7 18 159-176 9-26 (340)
287 4eun_A Thermoresistant glucoki 76.7 1.4 4.8E-05 38.0 2.9 20 156-175 28-47 (200)
288 2z43_A DNA repair and recombin 76.5 3.3 0.00011 38.8 5.6 41 157-197 107-150 (324)
289 3b9p_A CG5977-PA, isoform A; A 76.4 1.3 4.4E-05 40.8 2.8 19 157-175 54-72 (297)
290 3nwn_A Kinesin-like protein KI 76.3 1.7 5.9E-05 41.3 3.6 25 149-173 95-121 (359)
291 3cm0_A Adenylate kinase; ATP-b 76.2 1 3.5E-05 38.1 1.9 19 157-175 4-22 (186)
292 1ixz_A ATP-dependent metallopr 76.2 1.1 3.6E-05 40.4 2.0 53 119-174 12-66 (254)
293 1kht_A Adenylate kinase; phosp 76.2 1.4 4.9E-05 37.2 2.8 19 157-175 3-21 (192)
294 3u4q_B ATP-dependent helicase/ 75.9 1.7 6E-05 48.6 4.1 40 160-199 4-43 (1166)
295 3sr0_A Adenylate kinase; phosp 75.7 1.5 5E-05 38.2 2.7 17 160-176 3-19 (206)
296 1zuh_A Shikimate kinase; alpha 75.6 1.5 5.1E-05 36.4 2.7 19 158-176 8-26 (168)
297 1s96_A Guanylate kinase, GMP k 75.5 1.6 5.3E-05 38.5 2.9 21 154-174 13-33 (219)
298 2i4i_A ATP-dependent RNA helic 75.4 12 0.00042 35.8 9.7 72 187-268 275-350 (417)
299 1bg2_A Kinesin; motor protein, 75.3 1.9 6.7E-05 40.4 3.6 25 149-173 68-94 (325)
300 3nwj_A ATSK2; P loop, shikimat 75.0 1.9 6.5E-05 38.8 3.3 20 156-175 47-66 (250)
301 1fuu_A Yeast initiation factor 74.8 9.4 0.00032 36.3 8.6 70 356-430 88-167 (394)
302 2iut_A DNA translocase FTSK; n 74.8 3.1 0.00011 42.1 5.2 41 157-197 214-255 (574)
303 2c95_A Adenylate kinase 1; tra 74.7 1.8 6.3E-05 36.8 3.1 20 156-175 8-27 (196)
304 1knq_A Gluconate kinase; ALFA/ 74.7 1.4 4.8E-05 36.8 2.3 19 157-175 8-26 (175)
305 3umf_A Adenylate kinase; rossm 74.6 1.6 5.5E-05 38.3 2.7 19 158-176 30-48 (217)
306 3eph_A TRNA isopentenyltransfe 74.6 1.5 5.2E-05 42.3 2.7 17 160-176 5-21 (409)
307 3t61_A Gluconokinase; PSI-biol 74.6 1.6 5.5E-05 37.6 2.7 18 158-175 19-36 (202)
308 1xjc_A MOBB protein homolog; s 74.5 3.1 0.00011 34.8 4.3 26 159-185 6-31 (169)
309 2zr9_A Protein RECA, recombina 74.4 2.5 8.5E-05 40.1 4.2 36 157-195 61-96 (349)
310 1iy2_A ATP-dependent metallopr 74.4 1.3 4.5E-05 40.4 2.2 52 120-174 37-90 (278)
311 3hr8_A Protein RECA; alpha and 74.4 3.1 0.00011 39.5 4.8 38 157-197 61-98 (356)
312 3dc4_A Kinesin-like protein NO 74.3 2 6.8E-05 40.6 3.4 25 149-173 85-111 (344)
313 4a2p_A RIG-I, retinoic acid in 74.3 9.7 0.00033 38.2 8.9 70 357-430 55-135 (556)
314 3uie_A Adenylyl-sulfate kinase 74.2 1.5 5.1E-05 37.8 2.4 20 156-175 24-43 (200)
315 1zd8_A GTP:AMP phosphotransfer 73.9 1.8 6E-05 38.2 2.8 18 158-175 8-25 (227)
316 1via_A Shikimate kinase; struc 73.8 1.9 6.6E-05 36.0 3.0 17 159-175 6-22 (175)
317 3t15_A Ribulose bisphosphate c 73.7 1.6 5.6E-05 40.2 2.7 18 158-175 37-54 (293)
318 2c9o_A RUVB-like 1; hexameric 73.7 3.4 0.00012 40.8 5.2 18 158-175 64-81 (456)
319 3b6u_A Kinesin-like protein KI 73.7 2.2 7.6E-05 40.7 3.6 25 149-173 92-118 (372)
320 3lnc_A Guanylate kinase, GMP k 73.5 1.4 4.8E-05 38.9 2.1 19 156-174 26-44 (231)
321 2vvg_A Kinesin-2; motor protei 73.5 2.3 7.8E-05 40.3 3.6 25 149-173 80-106 (350)
322 2y65_A Kinesin, kinesin heavy 73.3 2.3 7.9E-05 40.5 3.6 25 149-173 75-101 (365)
323 2rhm_A Putative kinase; P-loop 73.3 1.8 6.2E-05 36.7 2.7 18 158-175 6-23 (193)
324 4a14_A Kinesin, kinesin-like p 73.3 2.3 7.9E-05 40.2 3.6 25 149-173 74-100 (344)
325 1gku_B Reverse gyrase, TOP-RG; 73.2 7.5 0.00026 42.9 8.2 74 356-431 98-181 (1054)
326 1goj_A Kinesin, kinesin heavy 73.2 2.2 7.7E-05 40.5 3.5 25 149-173 71-97 (355)
327 3fb4_A Adenylate kinase; psych 73.1 1.8 6.2E-05 37.6 2.7 17 160-176 3-19 (216)
328 1t5c_A CENP-E protein, centrom 73.0 2.4 8.1E-05 40.2 3.6 25 149-173 68-94 (349)
329 1tev_A UMP-CMP kinase; ploop, 72.9 1.9 6.4E-05 36.6 2.7 17 159-175 5-21 (196)
330 2h58_A Kinesin-like protein KI 72.9 2.4 8.2E-05 39.8 3.6 25 149-173 71-97 (330)
331 2nr8_A Kinesin-like protein KI 72.9 2.4 8.1E-05 40.3 3.6 25 149-173 94-120 (358)
332 3lre_A Kinesin-like protein KI 72.9 2.3 7.9E-05 40.4 3.5 25 149-173 96-122 (355)
333 3gbj_A KIF13B protein; kinesin 72.9 2.4 8.1E-05 40.3 3.6 25 149-173 83-109 (354)
334 1wp9_A ATP-dependent RNA helic 72.9 15 0.0005 35.8 9.7 70 356-430 51-130 (494)
335 1nks_A Adenylate kinase; therm 72.8 1.9 6.4E-05 36.5 2.7 16 160-175 4-19 (194)
336 1v5w_A DMC1, meiotic recombina 72.7 2.5 8.5E-05 40.0 3.7 48 150-197 110-165 (343)
337 2bdt_A BH3686; alpha-beta prot 72.6 1.9 6.6E-05 36.5 2.7 17 159-175 4-20 (189)
338 3io5_A Recombination and repai 72.6 3.7 0.00013 38.2 4.7 41 159-200 30-70 (333)
339 1gvn_B Zeta; postsegregational 72.5 1.5 5.1E-05 40.4 2.0 17 159-175 35-51 (287)
340 3pey_A ATP-dependent RNA helic 72.4 20 0.00067 33.9 10.3 77 187-273 242-322 (395)
341 1u94_A RECA protein, recombina 72.3 3 0.0001 39.6 4.2 37 157-196 63-99 (356)
342 1np6_A Molybdopterin-guanine d 72.2 4.8 0.00016 33.8 5.0 15 159-173 8-22 (174)
343 1v8k_A Kinesin-like protein KI 72.2 2.5 8.4E-05 40.9 3.5 24 150-173 146-171 (410)
344 3dl0_A Adenylate kinase; phosp 72.1 2 6.8E-05 37.4 2.7 16 160-175 3-18 (216)
345 3kta_A Chromosome segregation 72.0 2.2 7.4E-05 35.9 2.8 17 159-175 28-44 (182)
346 3bgw_A DNAB-like replicative h 72.0 2.8 9.6E-05 41.2 4.0 36 157-195 197-232 (444)
347 2v54_A DTMP kinase, thymidylat 71.9 1.8 6.1E-05 37.2 2.4 19 157-175 4-22 (204)
348 2zfi_A Kinesin-like protein KI 71.8 2.6 8.9E-05 40.2 3.6 25 149-173 80-106 (366)
349 3c8u_A Fructokinase; YP_612366 71.8 1.8 6.2E-05 37.5 2.4 18 157-174 22-39 (208)
350 1qf9_A UMP/CMP kinase, protein 71.7 2.1 7.1E-05 36.3 2.7 17 159-175 8-24 (194)
351 1cke_A CK, MSSA, protein (cyti 71.7 2 7E-05 37.6 2.7 18 158-175 6-23 (227)
352 2qt1_A Nicotinamide riboside k 71.6 1 3.5E-05 39.0 0.7 20 156-175 20-39 (207)
353 2iyv_A Shikimate kinase, SK; t 71.6 2.5 8.4E-05 35.6 3.1 18 158-175 3-20 (184)
354 1x88_A Kinesin-like protein KI 71.6 2.4 8.2E-05 40.3 3.3 25 149-173 79-105 (359)
355 2yjt_D ATP-dependent RNA helic 74.1 0.81 2.8E-05 38.3 0.0 73 188-270 30-106 (170)
356 1zak_A Adenylate kinase; ATP:A 71.4 2.1 7.1E-05 37.5 2.7 18 158-175 6-23 (222)
357 1e6c_A Shikimate kinase; phosp 71.3 2.4 8.2E-05 35.2 3.0 17 159-175 4-20 (173)
358 1in4_A RUVB, holliday junction 71.2 2.2 7.5E-05 40.2 3.0 18 158-175 52-69 (334)
359 1w36_B RECB, exodeoxyribonucle 71.2 6 0.00021 44.2 6.9 53 159-211 18-79 (1180)
360 1rj9_A FTSY, signal recognitio 71.2 3.5 0.00012 38.3 4.3 19 157-175 102-120 (304)
361 1ye8_A Protein THEP1, hypothet 71.2 2.2 7.6E-05 36.0 2.7 16 159-174 2-17 (178)
362 2wbe_C Bipolar kinesin KRP-130 71.1 2.6 8.9E-05 40.3 3.4 25 149-173 91-117 (373)
363 1tue_A Replication protein E1; 71.1 1.8 6.2E-05 37.5 2.1 43 130-174 29-75 (212)
364 2bwj_A Adenylate kinase 5; pho 71.0 2.2 7.5E-05 36.4 2.7 19 157-175 12-30 (199)
365 1f9v_A Kinesin-like protein KA 70.9 2.8 9.5E-05 39.7 3.5 25 149-173 75-101 (347)
366 2jaq_A Deoxyguanosine kinase; 70.8 2.2 7.6E-05 36.5 2.7 16 160-175 3-18 (205)
367 4etp_A Kinesin-like protein KA 70.8 3 0.0001 40.4 3.8 25 149-173 131-157 (403)
368 1aky_A Adenylate kinase; ATP:A 70.7 2.4 8.1E-05 37.1 2.9 18 158-175 5-22 (220)
369 2heh_A KIF2C protein; kinesin, 70.6 2.6 9E-05 40.4 3.3 26 149-174 125-152 (387)
370 3tif_A Uncharacterized ABC tra 70.6 1.5 5.2E-05 39.0 1.6 18 156-173 30-47 (235)
371 3fht_A ATP-dependent RNA helic 70.3 15 0.0005 35.1 8.8 72 189-270 267-342 (412)
372 2cdn_A Adenylate kinase; phosp 70.3 2.3 7.9E-05 36.5 2.7 17 159-175 22-38 (201)
373 3t0q_A AGR253WP; kinesin, alph 70.3 2.5 8.7E-05 40.0 3.1 25 149-173 76-102 (349)
374 2l82_A Designed protein OR32; 70.3 23 0.0008 26.4 7.6 46 360-405 5-50 (162)
375 1m7g_A Adenylylsulfate kinase; 70.1 2.1 7.1E-05 37.2 2.4 20 156-175 24-43 (211)
376 2r62_A Cell division protease 70.1 1.4 4.9E-05 39.8 1.3 18 158-175 45-62 (268)
377 1s2m_A Putative ATP-dependent 70.0 16 0.00055 34.8 9.0 70 357-430 89-168 (400)
378 3u06_A Protein claret segregat 69.9 3 0.0001 40.4 3.6 25 149-173 129-155 (412)
379 1f2t_A RAD50 ABC-ATPase; DNA d 69.9 2.7 9.2E-05 34.3 2.9 15 160-174 26-40 (149)
380 3d8b_A Fidgetin-like protein 1 69.7 2.3 7.9E-05 40.5 2.8 19 157-175 117-135 (357)
381 1tf5_A Preprotein translocase 69.7 17 0.00058 38.5 9.4 72 353-430 120-208 (844)
382 1e4v_A Adenylate kinase; trans 69.5 2.4 8.4E-05 36.8 2.7 16 160-175 3-18 (214)
383 2i3b_A HCR-ntpase, human cance 69.5 2.9 9.9E-05 35.7 3.1 42 260-304 103-146 (189)
384 2fsf_A Preprotein translocase 69.4 15 0.00053 38.8 9.0 72 353-430 111-199 (853)
385 2r8r_A Sensor protein; KDPD, P 69.4 4 0.00014 35.9 4.0 24 159-182 8-31 (228)
386 3cob_A Kinesin heavy chain-lik 69.3 2.7 9.4E-05 40.1 3.1 24 150-173 71-96 (369)
387 3tqc_A Pantothenate kinase; bi 69.3 6.4 0.00022 36.7 5.7 16 160-175 95-110 (321)
388 2pt5_A Shikimate kinase, SK; a 69.3 2.6 8.8E-05 34.8 2.7 17 159-175 2-18 (168)
389 2v9p_A Replication protein E1; 69.2 2.2 7.6E-05 39.6 2.5 20 156-175 125-144 (305)
390 3gk5_A Uncharacterized rhodane 69.2 7.3 0.00025 29.5 5.1 36 357-392 55-90 (108)
391 1cr0_A DNA primase/helicase; R 69.2 3.8 0.00013 37.6 4.1 38 156-195 34-71 (296)
392 4a74_A DNA repair and recombin 69.2 2.2 7.4E-05 37.4 2.3 21 156-176 24-44 (231)
393 1yks_A Genome polyprotein [con 69.1 9.1 0.00031 37.5 7.0 67 189-267 178-245 (440)
394 3bfn_A Kinesin-like protein KI 69.1 2.5 8.5E-05 40.6 2.8 24 150-173 90-115 (388)
395 2r2a_A Uncharacterized protein 69.1 2.9 9.8E-05 36.1 3.0 21 160-180 8-28 (199)
396 4fcw_A Chaperone protein CLPB; 69.0 2.4 8.2E-05 39.2 2.7 17 159-175 49-65 (311)
397 1ukz_A Uridylate kinase; trans 69.0 2.6 8.8E-05 36.2 2.7 16 159-174 17-32 (203)
398 3b9q_A Chloroplast SRP recepto 69.0 3.5 0.00012 38.2 3.8 19 157-175 100-118 (302)
399 3asz_A Uridine kinase; cytidin 69.0 2.3 7.8E-05 36.8 2.4 17 158-174 7-23 (211)
400 1c9k_A COBU, adenosylcobinamid 68.9 4 0.00014 34.5 3.8 32 160-198 2-33 (180)
401 3cmw_A Protein RECA, recombina 68.7 6.5 0.00022 45.2 6.5 122 156-307 1430-1571(1706)
402 1hv8_A Putative ATP-dependent 68.7 24 0.00083 32.8 9.9 70 356-430 73-152 (367)
403 2owm_A Nckin3-434, related to 68.6 3.3 0.00011 40.6 3.6 25 149-173 127-153 (443)
404 1sgw_A Putative ABC transporte 68.6 1.9 6.7E-05 37.7 1.8 19 156-174 34-52 (214)
405 2cbz_A Multidrug resistance-as 68.5 1.8 6.1E-05 38.6 1.6 18 156-173 30-47 (237)
406 1ak2_A Adenylate kinase isoenz 68.5 2.6 9E-05 37.2 2.7 19 158-176 17-35 (233)
407 2pez_A Bifunctional 3'-phospho 68.4 2.4 8.3E-05 35.5 2.4 19 157-175 5-23 (179)
408 3fmo_B ATP-dependent RNA helic 68.3 4.7 0.00016 37.2 4.5 66 359-431 164-241 (300)
409 2if2_A Dephospho-COA kinase; a 68.1 2.7 9.3E-05 36.1 2.7 17 159-175 3-19 (204)
410 1u0j_A DNA replication protein 68.1 4.4 0.00015 36.7 4.1 43 130-175 74-122 (267)
411 3qf7_A RAD50; ABC-ATPase, ATPa 68.0 3.1 0.0001 39.8 3.2 17 159-175 25-41 (365)
412 2z0h_A DTMP kinase, thymidylat 68.0 2.8 9.5E-05 35.6 2.7 16 160-175 3-18 (197)
413 1xp8_A RECA protein, recombina 67.9 4.3 0.00015 38.8 4.2 37 157-196 74-110 (366)
414 2xb4_A Adenylate kinase; ATP-b 67.9 2.8 9.4E-05 36.8 2.7 16 160-175 3-18 (223)
415 1jjv_A Dephospho-COA kinase; P 67.8 2.8 9.6E-05 36.1 2.7 16 160-175 5-20 (206)
416 1sky_E F1-ATPase, F1-ATP synth 67.7 33 0.0011 33.7 10.5 24 153-176 147-170 (473)
417 2yvu_A Probable adenylyl-sulfa 67.7 2.6 8.7E-05 35.7 2.4 18 158-175 14-31 (186)
418 2rep_A Kinesin-like protein KI 67.5 3.5 0.00012 39.5 3.5 24 150-173 107-132 (376)
419 2x8a_A Nuclear valosin-contain 67.5 2.8 9.5E-05 38.3 2.7 52 120-174 7-61 (274)
420 2bbw_A Adenylate kinase 4, AK4 67.3 2.8 9.7E-05 37.3 2.7 18 158-175 28-45 (246)
421 2plr_A DTMP kinase, probable t 67.3 2.9 9.9E-05 36.0 2.7 18 158-175 5-22 (213)
422 3be4_A Adenylate kinase; malar 67.2 3.1 0.00011 36.2 2.9 18 158-175 6-23 (217)
423 2pbr_A DTMP kinase, thymidylat 67.2 3 0.0001 35.3 2.7 16 160-175 3-18 (195)
424 1uf9_A TT1252 protein; P-loop, 67.1 2.9 0.0001 35.7 2.7 17 159-175 10-26 (203)
425 2vli_A Antibiotic resistance p 67.0 2.4 8.1E-05 35.6 2.0 18 158-175 6-23 (183)
426 3tlx_A Adenylate kinase 2; str 66.9 2.9 0.0001 37.3 2.7 19 158-176 30-48 (243)
427 2wwf_A Thymidilate kinase, put 66.9 3.1 0.00011 35.8 2.8 19 157-175 10-28 (212)
428 3tbk_A RIG-I helicase domain; 66.8 8 0.00027 38.8 6.3 70 357-430 52-132 (555)
429 1zu4_A FTSY; GTPase, signal re 66.6 4.2 0.00014 38.0 3.8 19 158-176 106-124 (320)
430 1nkt_A Preprotein translocase 66.5 18 0.00063 38.5 8.8 73 352-430 147-236 (922)
431 1g8p_A Magnesium-chelatase 38 66.5 2.3 8E-05 40.0 2.0 19 157-175 45-63 (350)
432 3dkp_A Probable ATP-dependent 66.3 5.6 0.00019 35.2 4.5 71 358-431 99-181 (245)
433 3gfo_A Cobalt import ATP-bindi 66.2 2 6.9E-05 39.2 1.5 18 156-173 33-50 (275)
434 2j0s_A ATP-dependent RNA helic 66.1 19 0.00066 34.4 8.7 71 356-430 104-184 (410)
435 2f1r_A Molybdopterin-guanine d 66.0 1.8 6.1E-05 36.4 1.0 17 159-175 4-20 (171)
436 2pcj_A ABC transporter, lipopr 65.9 2.1 7.2E-05 37.7 1.5 18 156-173 29-46 (224)
437 1q0u_A Bstdead; DEAD protein, 65.9 4.9 0.00017 34.9 3.9 71 357-431 72-156 (219)
438 4a2q_A RIG-I, retinoic acid in 65.9 15 0.00052 39.0 8.5 70 357-430 296-376 (797)
439 1pzn_A RAD51, DNA repair and r 65.8 4.1 0.00014 38.6 3.6 22 158-179 132-153 (349)
440 1nn5_A Similar to deoxythymidy 65.7 3.4 0.00012 35.6 2.9 19 157-175 9-27 (215)
441 2ff7_A Alpha-hemolysin translo 65.7 2.1 7.3E-05 38.3 1.5 18 156-173 34-51 (247)
442 4e22_A Cytidylate kinase; P-lo 65.6 3.3 0.00011 37.1 2.8 19 157-175 27-45 (252)
443 3foj_A Uncharacterized protein 65.6 5.8 0.0002 29.5 3.8 35 357-391 56-90 (100)
444 4dzz_A Plasmid partitioning pr 65.4 11 0.00039 31.9 6.2 31 239-272 55-85 (206)
445 3pxg_A Negative regulator of g 65.1 4.3 0.00015 40.2 3.8 20 157-176 201-220 (468)
446 2ghi_A Transport protein; mult 65.1 2.3 7.8E-05 38.5 1.6 19 156-174 45-63 (260)
447 3g5u_A MCG1178, multidrug resi 65.1 4.3 0.00015 45.8 4.1 39 261-299 543-581 (1284)
448 3a4m_A L-seryl-tRNA(SEC) kinas 65.0 3.3 0.00011 37.3 2.7 17 159-175 6-22 (260)
449 4g1u_C Hemin import ATP-bindin 64.9 2.2 7.7E-05 38.7 1.5 18 156-173 36-53 (266)
450 2og2_A Putative signal recogni 64.7 4.7 0.00016 38.4 3.7 18 158-175 158-175 (359)
451 2pze_A Cystic fibrosis transme 64.7 2.9 9.9E-05 37.0 2.2 18 156-173 33-50 (229)
452 1wv9_A Rhodanese homolog TT165 64.7 8.3 0.00028 28.2 4.5 35 358-392 54-88 (94)
453 3iwh_A Rhodanese-like domain p 64.5 5.5 0.00019 30.0 3.5 35 357-391 56-90 (103)
454 3eiq_A Eukaryotic initiation f 64.4 22 0.00076 33.9 8.8 72 356-430 107-188 (414)
455 1b0u_A Histidine permease; ABC 64.2 2.4 8.3E-05 38.4 1.6 18 156-173 31-48 (262)
456 3eme_A Rhodanese-like domain p 64.2 5.6 0.00019 29.8 3.5 35 357-391 56-90 (103)
457 1g41_A Heat shock protein HSLU 64.1 14 0.00048 36.1 7.1 19 157-175 50-68 (444)
458 3ice_A Transcription terminati 64.0 7.7 0.00026 37.2 5.0 28 148-175 162-192 (422)
459 1g6h_A High-affinity branched- 63.8 3.1 0.0001 37.6 2.2 18 156-173 32-49 (257)
460 1ji0_A ABC transporter; ATP bi 63.6 3.1 0.00011 37.1 2.2 18 156-173 31-48 (240)
461 4akg_A Glutathione S-transfera 63.5 7.6 0.00026 46.9 5.9 21 154-174 1264-1284(2695)
462 1mv5_A LMRA, multidrug resista 63.4 2.1 7.3E-05 38.2 1.1 19 156-174 27-45 (243)
463 1htw_A HI0065; nucleotide-bind 63.3 3 0.0001 34.4 1.9 19 156-174 32-50 (158)
464 3f9v_A Minichromosome maintena 63.1 3.5 0.00012 42.3 2.7 15 159-173 329-343 (595)
465 1vpl_A ABC transporter, ATP-bi 63.0 2.6 9E-05 38.0 1.6 18 156-173 40-57 (256)
466 3auy_A DNA double-strand break 63.0 2.9 0.0001 40.0 2.0 36 382-417 306-346 (371)
467 2ipc_A Preprotein translocase 63.0 22 0.00074 38.1 8.5 59 352-416 115-177 (997)
468 1vht_A Dephospho-COA kinase; s 62.9 3.9 0.00013 35.5 2.7 17 159-175 6-22 (218)
469 2olj_A Amino acid ABC transpor 62.6 2.7 9.2E-05 38.1 1.6 18 156-173 49-66 (263)
470 2ixe_A Antigen peptide transpo 62.4 2.7 9.3E-05 38.3 1.6 18 156-173 44-61 (271)
471 2qi9_C Vitamin B12 import ATP- 62.4 2.7 9.2E-05 37.7 1.5 18 156-173 25-42 (249)
472 1gtv_A TMK, thymidylate kinase 62.3 2.4 8E-05 36.7 1.1 16 160-175 3-18 (214)
473 2p5t_B PEZT; postsegregational 62.3 3.1 0.00011 37.3 2.0 17 159-175 34-50 (253)
474 2yz2_A Putative ABC transporte 62.2 2.8 9.4E-05 38.1 1.6 18 156-173 32-49 (266)
475 2grj_A Dephospho-COA kinase; T 62.1 4.3 0.00015 34.7 2.7 16 160-175 15-30 (192)
476 1rz3_A Hypothetical protein rb 62.1 4.2 0.00014 34.9 2.7 17 159-175 24-40 (201)
477 2ihy_A ABC transporter, ATP-bi 61.8 2.8 9.5E-05 38.4 1.5 18 156-173 46-63 (279)
478 2zu0_C Probable ATP-dependent 61.8 3.6 0.00012 37.4 2.3 19 156-174 45-63 (267)
479 2vhj_A Ntpase P4, P4; non- hyd 61.7 3.9 0.00013 38.1 2.5 24 156-179 122-145 (331)
480 3nh6_A ATP-binding cassette SU 61.4 2.3 8E-05 39.5 1.0 19 156-174 79-97 (306)
481 2d7d_A Uvrabc system protein B 61.1 61 0.0021 33.5 11.7 77 188-274 445-525 (661)
482 2d2e_A SUFC protein; ABC-ATPas 61.0 3.7 0.00013 36.8 2.2 19 156-174 28-46 (250)
483 2nq2_C Hypothetical ABC transp 60.9 3.7 0.00013 36.9 2.2 18 156-173 30-47 (253)
484 3qks_A DNA double-strand break 60.8 4.9 0.00017 34.7 2.9 17 159-175 25-41 (203)
485 2ce7_A Cell division protein F 60.3 3.4 0.00012 41.0 2.0 17 158-174 50-66 (476)
486 1odf_A YGR205W, hypothetical 3 60.1 4.6 0.00016 37.1 2.7 16 160-175 34-49 (290)
487 3g5j_A Putative ATP/GTP bindin 59.9 11 0.00038 29.4 4.8 36 358-393 90-126 (134)
488 2xau_A PRE-mRNA-splicing facto 59.9 41 0.0014 35.5 10.3 75 188-268 303-393 (773)
489 2yhs_A FTSY, cell division pro 59.2 6.6 0.00023 39.0 3.8 17 159-175 295-311 (503)
490 2v6i_A RNA helicase; membrane, 58.9 11 0.00039 36.6 5.5 53 189-246 172-225 (431)
491 1ltq_A Polynucleotide kinase; 58.8 4.9 0.00017 36.9 2.7 16 160-175 5-20 (301)
492 1tf7_A KAIC; homohexamer, hexa 58.8 7.2 0.00025 39.2 4.1 28 156-183 38-65 (525)
493 2jtq_A Phage shock protein E; 58.8 19 0.00065 25.5 5.5 36 356-392 40-76 (85)
494 2bbs_A Cystic fibrosis transme 58.7 3.4 0.00012 38.0 1.6 19 156-174 63-81 (290)
495 3bs4_A Uncharacterized protein 58.6 9.6 0.00033 34.3 4.5 51 157-211 21-71 (260)
496 1ry6_A Internal kinesin; kines 58.6 6.2 0.00021 37.4 3.4 18 156-173 82-101 (360)
497 3m6a_A ATP-dependent protease 58.6 4.9 0.00017 40.7 2.8 20 156-175 107-126 (543)
498 3tqf_A HPR(Ser) kinase; transf 58.3 5 0.00017 33.7 2.3 20 156-175 15-34 (181)
499 1q57_A DNA primase/helicase; d 57.9 5.1 0.00017 40.1 2.8 37 157-195 242-278 (503)
500 3r20_A Cytidylate kinase; stru 57.9 5.5 0.00019 35.3 2.7 19 160-178 12-30 (233)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-59 Score=472.38 Aligned_cols=360 Identities=28% Similarity=0.460 Sum_probs=319.2
Q ss_pred CCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-----CceEE
Q 011446 117 TKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-----NVIQV 191 (485)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-----~~~~~ 191 (485)
.+...|+++++++.+++++.+.||..|+|+|.++|+.+++++|+++++|||||||++|++|++..+.... .++++
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 3456799999999999999999999999999999999999999999999999999999999999886533 35689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeecc
Q 011446 192 VILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEA 271 (485)
Q Consensus 192 lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEa 271 (485)
||++||++|+.|+++.+++++...++++..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||+|||
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEa 212 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEA 212 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETH
T ss_pred EEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccH
Confidence 99999999999999999999988889999999999988888888889999999999999999888778999999999999
Q ss_pred ccccCCCCHHHHHHHHHhC--CCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-ccccccceEEEEeehhhhhHHHH
Q 011446 272 DKLLSPEFQPSVEQLIRFL--PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEERQKVHCL 348 (485)
Q Consensus 272 h~~~~~~~~~~~~~i~~~~--~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 348 (485)
|++++.+|...+..++..+ +++.|++++|||+|..+..+...++.++..+.+.. .....++.+.+..+....+...+
T Consensus 213 h~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 292 (434)
T 2db3_A 213 DRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKL 292 (434)
T ss_dssp HHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHH
T ss_pred hhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHH
Confidence 9999999999999999875 67899999999999999999999999887766543 23345667777777788888888
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCE
Q 011446 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (485)
Q Consensus 349 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (485)
..++.....+ +||||++++.|+.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 293 ~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~ 371 (434)
T 2db3_A 293 IEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKH 371 (434)
T ss_dssp HHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCE
T ss_pred HHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCE
Confidence 8888876644 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChHHHHHHhhhccccCcccccc--------hHHHHHHHHHhhccccccC
Q 011446 429 VINFDFPKNSETYLHRVCWIQLSFSLSLPN--------LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~--------~~~~~~~~~~~~~~~~~~~ 477 (485)
||+||+|.+.++|+||+||+||.|+.|... ......+.+.+......++
T Consensus 372 VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 372 VINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp EEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred EEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999998866532 2234445555555444444
No 2
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.2e-57 Score=451.24 Aligned_cols=365 Identities=67% Similarity=1.035 Sum_probs=325.3
Q ss_pred ccccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEE
Q 011446 113 DVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVV 192 (485)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~l 192 (485)
+........|+++++++.+.+.+.+.||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.....+.++|
T Consensus 14 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~l 93 (400)
T 1s2m_A 14 DVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQAL 93 (400)
T ss_dssp -------CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred cccccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEE
Confidence 33444567899999999999999999999999999999999999999999999999999999999999887665666899
Q ss_pred EEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccc
Q 011446 193 ILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD 272 (485)
Q Consensus 193 il~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah 272 (485)
|++|+++|+.|+.+.+.++....++.+...+|+.....+...+...++|+|+||++|.+++......+.++++||+||||
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 94 IMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred EEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 99999999999999999999888999999999998888777777889999999999999888777778999999999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHH
Q 011446 273 KLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLF 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 352 (485)
++.+.+|...+..++..++...+++++|||++..+..+...++..|..+.........++.+++.......+...+..++
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 253 (400)
T 1s2m_A 174 KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLF 253 (400)
T ss_dssp HHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHH
Confidence 99888888889999998888999999999999999999999999888777766666777888888888888889999999
Q ss_pred HhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEc
Q 011446 353 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINF 432 (485)
Q Consensus 353 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~ 432 (485)
.....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 254 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~ 333 (400)
T 1s2m_A 254 SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINF 333 (400)
T ss_dssp HHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEES
T ss_pred hhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEe
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccccccC
Q 011446 433 DFPKNSETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 433 ~~p~s~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~~~~~ 477 (485)
++|.|..+|+||+|||||.|+-+... ...+..++.+...+++.++
T Consensus 334 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 385 (400)
T 1s2m_A 334 DFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIP 385 (400)
T ss_dssp SCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECC
T ss_pred CCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccc
Confidence 99999999999999999998655432 3345556666666666555
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.9e-56 Score=449.63 Aligned_cols=361 Identities=34% Similarity=0.612 Sum_probs=320.2
Q ss_pred CCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
....|+++++++.+.+.+.+.||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.....+.++||++|+
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPT 114 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSS
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCc
Confidence 34579999999999999999999999999999999999999999999999999999999999988765556799999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC
Q 011446 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (485)
++|+.|+.+.+.+++...++.+...+|+.....+...+..+++|+|+||++|.+++.+....+.++++||+||||++.+.
T Consensus 115 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~ 194 (410)
T 2j0s_A 115 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK 194 (410)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhh
Confidence 99999999999999988899999999999988887777778899999999999999887777889999999999999999
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-ccccccceEEEEeehhh-hhHHHHHHHHHhc
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEER-QKVHCLNTLFSKL 355 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~ 355 (485)
+|...+..++..++.+.|++++|||++..+.++...++.+|..+.... .....++.+++...... .+...+..++...
T Consensus 195 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~ 274 (410)
T 2j0s_A 195 GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 274 (410)
T ss_dssp TTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhc
Confidence 999999999999999999999999999988888888888887665543 33445666666655543 4788888888888
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP 435 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p 435 (485)
..+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p 354 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP 354 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccccccCC
Q 011446 436 KNSETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTDRLVDL 478 (485)
Q Consensus 436 ~s~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 478 (485)
.+...|+||+||+||.|+.+... ...+..+..+........+.
T Consensus 355 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 355 NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred CCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 99999999999999998766442 33455566666666655543
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.6e-56 Score=445.86 Aligned_cols=341 Identities=33% Similarity=0.530 Sum_probs=302.7
Q ss_pred CCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC----------
Q 011446 117 TKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---------- 186 (485)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---------- 186 (485)
.+..+|+++++++.+.+.+...||..|+|+|.++++.++.++++++.+|||||||++|++|++..+...+
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 3445799999999999999999999999999999999999999999999999999999999998875432
Q ss_pred --------CceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCcc
Q 011446 187 --------NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC 258 (485)
Q Consensus 187 --------~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~ 258 (485)
.++++||++|+++|+.|+++.++++....++.+..++|+.....+...+..+++|+|+||++|.+++.....
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 125799999999999999999999998888999999999998888888888899999999999999888777
Q ss_pred ccCCcceEEeeccccccCCCCHHHHHHHHHhC--CC--CCcEEEEecccchHHHHHHHHhcCCCeEEeecc-ccccccce
Q 011446 259 ILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL--PA--NRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGIT 333 (485)
Q Consensus 259 ~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~--~~--~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 333 (485)
.+.++++||+||||++++.+|...+..++... +. ..+++++|||++..+..+...++.++..+.... .....++.
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT 251 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEE
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCce
Confidence 78999999999999999999999999998743 32 678999999999999999999998887665543 23345667
Q ss_pred EEEEeehhhhhHHHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEE
Q 011446 334 QYYAFVEERQKVHCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV 412 (485)
Q Consensus 334 ~~~~~~~~~~~~~~l~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlv 412 (485)
+.+.......+...+..++... ..+++||||++++.++.+++.|.+.++.+..+||++++++|..+++.|++|+.+|||
T Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 331 (417)
T 2i4i_A 252 QKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILV 331 (417)
T ss_dssp EEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEE
T ss_pred EEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 7777777788888888888876 456899999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 413 CTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 413 aT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
||+++++|+|+|++++||++++|.|..+|+||+||+||.|+-+..
T Consensus 332 aT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 376 (417)
T 2i4i_A 332 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 376 (417)
T ss_dssp ECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEE
T ss_pred ECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceE
Confidence 999999999999999999999999999999999999999875443
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2e-54 Score=432.04 Aligned_cols=338 Identities=38% Similarity=0.628 Sum_probs=303.7
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
..|+++++++.+.+.+.+.||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999998876656669999999999
Q ss_pred HHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-
Q 011446 200 LALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS- 276 (485)
Q Consensus 200 la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~- 276 (485)
|+.|+.+.+.++.... ++.+..++|+.........+. ..++|+|+||++|..++......+.++++||+||||++.+
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999998766 788999999988776655543 3479999999999998888777789999999999999887
Q ss_pred CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc--cccccceEEEEeehhhhhHHHHHHHHHh
Q 011446 277 PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE--LTLKGITQYYAFVEERQKVHCLNTLFSK 354 (485)
Q Consensus 277 ~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 354 (485)
.++...+..++...+...+++++|||++.....+...++..|..+..... .....+.+++.......+...+..++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDV 247 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHh
Confidence 47888888899988889999999999999999999999988877665432 3345666777777778888888999988
Q ss_pred cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCC
Q 011446 355 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 434 (485)
Q Consensus 355 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~ 434 (485)
...+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~ 327 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 327 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSC
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhhhccccCccccc
Q 011446 435 PKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 435 p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
|.|...|+||+||+||.|+-+..
T Consensus 328 p~s~~~~~Qr~GR~~R~g~~g~~ 350 (391)
T 1xti_A 328 PEDSDTYLHRVARAGRFGTKGLA 350 (391)
T ss_dssp CSSHHHHHHHHCBCSSSCCCCEE
T ss_pred CCCHHHHHHhcccccCCCCceEE
Confidence 99999999999999999865544
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6.9e-55 Score=438.78 Aligned_cols=360 Identities=35% Similarity=0.592 Sum_probs=305.4
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
...|+++++++.+.+.+.+.||..|+++|.++++.++.++++++.+|||||||++|++|++..+.....+.++||++|++
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 35789999999999999999999999999999999999999999999999999999999999887665667899999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (485)
+|+.|+.+.+.+++...+..+...+|+.........+. ..++|+|+||++|.+++......+.++++||+||||++.+.
T Consensus 119 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~ 198 (414)
T 3eiq_A 119 ELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR 198 (414)
T ss_dssp HHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhcc
Confidence 99999999999999988999999999988877766665 67899999999999998887777888999999999999999
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-ccccccceEEEEeeh-hhhhHHHHHHHHHhc
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVE-ERQKVHCLNTLFSKL 355 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~ 355 (485)
+|...+..++..++++.+++++|||++..+..+...++.++..+.... ......+.+.+.... ...+...+..++...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 278 (414)
T 3eiq_A 199 GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 278 (414)
T ss_dssp TTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSS
T ss_pred CcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999998887765543 334455555555544 445888899999988
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP 435 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p 435 (485)
..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||++++|
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p 358 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 358 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccccccCC
Q 011446 436 KNSETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTDRLVDL 478 (485)
Q Consensus 436 ~s~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 478 (485)
.|..+|+||+|||||.|+-+... ...+..++.+....+..++.
T Consensus 359 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (414)
T 3eiq_A 359 TNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPL 408 (414)
T ss_dssp SSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC
T ss_pred CCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccCh
Confidence 99999999999999997654432 34555666666666665553
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2e-53 Score=427.73 Aligned_cols=364 Identities=34% Similarity=0.560 Sum_probs=306.5
Q ss_pred CCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEE
Q 011446 117 TKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL 194 (485)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 194 (485)
.....|+++++++.+++.+.+.||..|+++|.++++.++.+ +++++++|||+|||++|++|++..+.....++++||+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 34467999999999999999999999999999999999987 8999999999999999999999998877667799999
Q ss_pred cCcHHHHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc-CccccCCcceEEeeccc
Q 011446 195 VPTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEAD 272 (485)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~-~~~~l~~~~~iViDEah 272 (485)
+|+++|+.|+.+.+.++.... +..+....++...... ....++|+|+||++|.+++.+ ....+.++++||+||||
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 999999999999999988764 5777777777654422 134679999999999998865 45567899999999999
Q ss_pred cccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc-cccccceEEEEeeh-hhhhHHHHH
Q 011446 273 KLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVE-ERQKVHCLN 349 (485)
Q Consensus 273 ~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~ 349 (485)
++.+ .++...+..+...++.+.|++++|||++..+..+...++.++..+..... .....+.+.+.... ...+...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 258 (412)
T ss_dssp HHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHH
T ss_pred HHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHH
Confidence 8876 68888899999999999999999999999999999999999887766543 33344555544443 456778888
Q ss_pred HHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEE
Q 011446 350 TLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVV 429 (485)
Q Consensus 350 ~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~V 429 (485)
.++.....+++||||++++.++.+++.|.+.++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 259 ~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V 338 (412)
T 3fht_A 259 NLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVV 338 (412)
T ss_dssp HHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEE
T ss_pred HHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEE
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC------CChHHHHHHhhhccccCcccccc--------hHHHHHHHHHhhccccccCCCCCCC
Q 011446 430 INFDFP------KNSETYLHRVCWIQLSFSLSLPN--------LQFMCSMLMYICFTDRLVDLEGLDT 483 (485)
Q Consensus 430 I~~~~p------~s~~~~~Qr~GRagR~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~ 483 (485)
|++++| .+..+|+||+||+||.|+-+... ...+..+.++....+..++.+++..
T Consensus 339 i~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 406 (412)
T 3fht_A 339 INFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDE 406 (412)
T ss_dssp EESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-------
T ss_pred EEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHH
Confidence 999999 57799999999999988754332 3345556677777777766555443
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.9e-53 Score=415.94 Aligned_cols=353 Identities=31% Similarity=0.518 Sum_probs=307.1
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
..+|+++++++.+.+.+.+.||..|+|+|.++++.++.+ +++++.+|||+|||++|++|++..+... .+.++||++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 357999999999999999999999999999999999988 6899999999999999999999887653 34589999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC
Q 011446 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (485)
++|+.|+.+.+.++....++.+...+|+.....+...+. .++|+|+||++|.+.+......+.++++||+||||++.+.
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh
Confidence 999999999999998888889999999988776655554 6899999999999988887777889999999999999999
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCC
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQI 357 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 357 (485)
++...+..++..++.+.+++++|||++.........++.++..+.... ..++.+.+.......+...+..++. ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~l~-~~~ 238 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI---NANIEQSYVEVNENERFEALCRLLK-NKE 238 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS---SSSSEEEEEECCGGGHHHHHHHHHC-STT
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC---CCCceEEEEEeChHHHHHHHHHHHh-cCC
Confidence 999999999999999999999999999998888888887765554332 2355566666677777777777776 455
Q ss_pred CcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCC
Q 011446 358 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKN 437 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s 437 (485)
.++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|
T Consensus 239 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s 318 (367)
T 1hv8_A 239 FYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQN 318 (367)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSC
T ss_pred CcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccccccC
Q 011446 438 SETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 438 ~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~~~~~ 477 (485)
..+|+||+|||||.|+-+... ...+..++++.+..+++++
T Consensus 319 ~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 319 PESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp HHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred HHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999998654332 3455556666666655443
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.3e-53 Score=423.62 Aligned_cols=334 Identities=32% Similarity=0.574 Sum_probs=296.0
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
.+|+++++++.+++.+.+.||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.....+.++||++|+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 57999999999999999999999999999999999998 8999999999999999999999988776667799999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-
Q 011446 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS- 276 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~- 276 (485)
++|+.|+.+.+.++....++.+...+++...... ...++|+|+||++|...+......+.++++||+||||++.+
T Consensus 85 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 85 RELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCc
Confidence 9999999999999998888888888877543321 23689999999999998888777789999999999998876
Q ss_pred CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc-cccccceEEEEee-hhhhhHHHHHHHHHh
Q 011446 277 PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFV-EERQKVHCLNTLFSK 354 (485)
Q Consensus 277 ~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~l~~~ 354 (485)
.++...+..+...++.+.+++++|||++..+..+...++..+..+..... .....+.+.+... ....+...+..++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGL 240 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHh
Confidence 67888899999999999999999999999999999999888877655433 3334455444444 455677788888888
Q ss_pred cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCC
Q 011446 355 LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 434 (485)
Q Consensus 355 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~ 434 (485)
...+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++
T Consensus 241 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~ 320 (395)
T 3pey_A 241 MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDL 320 (395)
T ss_dssp TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------ChHHHHHHhhhccccCccccc
Q 011446 435 PK------NSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 435 p~------s~~~~~Qr~GRagR~g~~~~~ 457 (485)
|. |..+|+||+|||||.|+.+..
T Consensus 321 p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~ 349 (395)
T 3pey_A 321 PTLANGQADPATYIHRIGRTGRFGRKGVA 349 (395)
T ss_dssp CBCTTSSBCHHHHHHHHTTSSCTTCCEEE
T ss_pred CCCCcCCCCHHHhhHhccccccCCCCceE
Confidence 99 999999999999999875443
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7e-53 Score=440.66 Aligned_cols=330 Identities=27% Similarity=0.412 Sum_probs=274.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEccCCCchhHHhHHHHHhhhhccC----CceEEEEEcCcHHH
Q 011446 127 LKRELLMGIFEKGFERPSPIQEESIPIAL--TGSDILARAKNGTGKTAAFCIPALEKIDQDN----NVIQVVILVPTREL 200 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~P~~~l 200 (485)
+++.+++.+.+.||..|+|+|.++|+.++ .++++++++|||||||++|++|++..+.... .++++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999999 6789999999999999999999999886543 23589999999999
Q ss_pred HHHHHHHHHHHhcc----CCceEEEEECCCChHHHHHHh-cCCCeEEEEcchHHHHhhhcC-ccccCCcceEEeeccccc
Q 011446 201 ALQTSQVCKELGKH----LNIQVMVTTGGTSLKDDIMRL-YQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADKL 274 (485)
Q Consensus 201 a~q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~~~~~-~~~l~~~~~iViDEah~~ 274 (485)
+.|+++.++++... ....+..++|+.....+...+ ...++|+|+||++|.+++.+. ...++.+++|||||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987543 245678888888877666555 347899999999999887764 335788999999999999
Q ss_pred cCCCCHHHHHHHHHhC-------CCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-----ccccccceEEEEeehhh
Q 011446 275 LSPEFQPSVEQLIRFL-------PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-----ELTLKGITQYYAFVEER 342 (485)
Q Consensus 275 ~~~~~~~~~~~i~~~~-------~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 342 (485)
++.+|...+..++..+ ..++|++++|||++..+..+...++..+..+.+.. ......+.+.+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 9999999999887665 33789999999999999999998888876665432 11223344444433321
Q ss_pred --hhH---HHHHHHHHh-cCCCcEEEEecChhHHHHHHHHHHHc---CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEE
Q 011446 343 --QKV---HCLNTLFSK-LQINQSIIFCNSVNRVELLAKKITEL---GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 413 (485)
Q Consensus 343 --~~~---~~l~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlva 413 (485)
... ..+...+.. ....++||||++++.|+.+++.|... ++.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 112 222222322 45669999999999999999999987 899999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccc
Q 011446 414 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 414 T~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~ 456 (485)
|+++++|||+|++++||++++|.+..+|+||+|||||.|+-+.
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 441 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS 441 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCce
Confidence 9999999999999999999999999999999999999986554
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.2e-54 Score=432.13 Aligned_cols=338 Identities=38% Similarity=0.655 Sum_probs=186.5
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
...|+++++++.+.+.+.+.||..|+++|.++++.++.++++++.+|||+|||++|++|++..+.....++++||++|++
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 99 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 99 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCH
Confidence 35699999999999999999999999999999999999999999999999999999999999887766677999999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (485)
+|+.|+.+.+.++....++.+..++|+.........+. .++|+|+||++|...+......+.++++||+||||++.+.+
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~ 178 (394)
T 1fuu_A 100 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG 178 (394)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCC
Confidence 99999999999999888999999999988776655443 67999999999999888777778899999999999998889
Q ss_pred CHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-ccccccceEEEEeehh-hhhHHHHHHHHHhcC
Q 011446 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFVEE-RQKVHCLNTLFSKLQ 356 (485)
Q Consensus 279 ~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~ 356 (485)
+...+..++..+++..+++++|||++....++...++..|..+.... ......+.+++..... ..+...+..++....
T Consensus 179 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (394)
T 1fuu_A 179 FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 258 (394)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------
T ss_pred cHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCC
Confidence 99999999999999999999999999998898988988887665543 2233344444433333 336667777777777
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (485)
.+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~ 338 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 338 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhhccccCccccc
Q 011446 437 NSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 437 s~~~~~Qr~GRagR~g~~~~~ 457 (485)
|..+|+||+||+||.|+-+..
T Consensus 339 s~~~~~Qr~GR~~R~g~~g~~ 359 (394)
T 1fuu_A 339 NKENYIHRIGRGGRFGRKGVA 359 (394)
T ss_dssp ---------------------
T ss_pred CHHHHHHHcCcccCCCCCceE
Confidence 999999999999998765544
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=9.8e-54 Score=438.27 Aligned_cols=337 Identities=36% Similarity=0.599 Sum_probs=177.5
Q ss_pred CCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
....|++++|++.+++.+.++||..|+++|.++++.++.+ +++++++|||||||++|++|++..+.....++++||++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 169 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEEC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 4568999999999999999999999999999999999987 89999999999999999999999988777677999999
Q ss_pred CcHHHHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc-CccccCCcceEEeecccc
Q 011446 196 PTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEADK 273 (485)
Q Consensus 196 P~~~la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~-~~~~l~~~~~iViDEah~ 273 (485)
|+++|+.|+.+.+.++.... +..+....++...... .....+|+|+||++|.+++.+ ....+.++++|||||||+
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 99999999999999987754 5667777776654321 134578999999999998865 345578999999999999
Q ss_pred ccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccc-cccccceEEEEeeh-hhhhHHHHHH
Q 011446 274 LLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDE-LTLKGITQYYAFVE-ERQKVHCLNT 350 (485)
Q Consensus 274 ~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~~ 350 (485)
+++ .++...+..++..++.++|++++|||++..+..+...++.++..+.+... .....+.+.+..+. ...+...+..
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHH
Confidence 886 57888888888889999999999999999999999999998887766543 23344444444443 3456677777
Q ss_pred HHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEE
Q 011446 351 LFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 430 (485)
Q Consensus 351 l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI 430 (485)
++.....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 327 ~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI 406 (479)
T 3fmp_B 327 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 406 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE
Confidence 77777778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC------ChHHHHHHhhhccccCccccc
Q 011446 431 NFDFPK------NSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 431 ~~~~p~------s~~~~~Qr~GRagR~g~~~~~ 457 (485)
++|+|. +..+|+||+|||||.|+-|..
T Consensus 407 ~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 407 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp ---------------------------------
T ss_pred EecCCCCCccCCCHHHHHHHhcccccCCCCceE
Confidence 999994 678999999999998775544
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.3e-52 Score=435.12 Aligned_cols=331 Identities=27% Similarity=0.411 Sum_probs=276.4
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEccCCCchhHHhHHHHHhhhhccC----CceEEEEEcCcHHH
Q 011446 127 LKRELLMGIFEKGFERPSPIQEESIPIAL--TGSDILARAKNGTGKTAAFCIPALEKIDQDN----NVIQVVILVPTREL 200 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~P~~~l 200 (485)
|++.+++++.+.||..|+|+|.++|+.++ .++++++.+|||+|||++|++|++..+.... .++++||++|+++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 99999999999999999999999999999 6789999999999999999999999886542 34689999999999
Q ss_pred HHHHHHHHHHHhcc----CCceEEEEECCCChHHHHHHhc-CCCeEEEEcchHHHHhhhcC-ccccCCcceEEeeccccc
Q 011446 201 ALQTSQVCKELGKH----LNIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADKL 274 (485)
Q Consensus 201 a~q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~~~~~-~~~l~~~~~iViDEah~~ 274 (485)
+.|+.+.+.++... ....+..++|+.....+...+. ..++|+|+||++|.+++.+. ...+..+++|||||||++
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 99999999988632 3466788889888777666553 47899999999999887764 345788999999999999
Q ss_pred cCCCCHHHHHHHHHhCC-------CCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-----ccccccceEEEEeehhh
Q 011446 275 LSPEFQPSVEQLIRFLP-------ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-----ELTLKGITQYYAFVEER 342 (485)
Q Consensus 275 ~~~~~~~~~~~i~~~~~-------~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 342 (485)
++.+|...+..++..++ .++|++++|||++..+..+...++..+..+.+.. ......+.+.+......
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 267 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecch
Confidence 99999999998876653 3779999999999999999999988876665432 11223344444433321
Q ss_pred --hhHHH---HHHHHHh-cCCCcEEEEecChhHHHHHHHHHHHc---CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEE
Q 011446 343 --QKVHC---LNTLFSK-LQINQSIIFCNSVNRVELLAKKITEL---GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC 413 (485)
Q Consensus 343 --~~~~~---l~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlva 413 (485)
..... +...+.. ....++||||++++.|+.+++.|... ++.+..+||+|++.+|..+++.|+.|+.+||||
T Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVa 347 (579)
T 3sqw_A 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 347 (579)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEE
Confidence 22222 2333333 45679999999999999999999987 899999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 414 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 414 T~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
|+++++|||+|++++||++++|.+...|+||+|||||.|+-+..
T Consensus 348 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 391 (579)
T 3sqw_A 348 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS 391 (579)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE
T ss_pred cchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceE
Confidence 99999999999999999999999999999999999999865443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-50 Score=395.82 Aligned_cols=316 Identities=29% Similarity=0.483 Sum_probs=275.5
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHH
Q 011446 127 LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQ 206 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~ 206 (485)
|++.+.+.+.+.||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. +.++||++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999998864 3479999999999999999
Q ss_pred HHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHH
Q 011446 207 VCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQL 286 (485)
Q Consensus 207 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i 286 (485)
.++++....+..+..++|+.....+...+. .++|+|+||++|.+.+......+.++++||+||||++.+.++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999999888899999999988776665554 4899999999999988877777889999999999999999999999999
Q ss_pred HHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecC
Q 011446 287 IRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 366 (485)
Q Consensus 287 ~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~ 366 (485)
+...+...+++++|||++.........++.++..+... ....++.+.+.......+. ....+.....+++||||++
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvf~~~ 229 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC--IGLANVEHKFVHVKDDWRS--KVQALRENKDKGVIVFVRT 229 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS--GGGGGEEEEEEECSSSSHH--HHHHHHTCCCSSEEEECSC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc--cccCCceEEEEEeChHHHH--HHHHHHhCCCCcEEEEEcC
Confidence 99999999999999999999999999888877655332 3334444444444333322 2355566677899999999
Q ss_pred hhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhh
Q 011446 367 VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVC 446 (485)
Q Consensus 367 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~G 446 (485)
++.++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|..+|+||+|
T Consensus 230 ~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~G 305 (337)
T 2z0m_A 230 RNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIG 305 (337)
T ss_dssp HHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHT
T ss_pred HHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcC
Confidence 999999998885 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCccccc
Q 011446 447 WIQLSFSLSLP 457 (485)
Q Consensus 447 RagR~g~~~~~ 457 (485)
||||.|+-+..
T Consensus 306 R~gR~g~~g~~ 316 (337)
T 2z0m_A 306 RTGRMGRKGEA 316 (337)
T ss_dssp TBCGGGCCEEE
T ss_pred ccccCCCCceE
Confidence 99999876544
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1e-50 Score=421.45 Aligned_cols=324 Identities=18% Similarity=0.204 Sum_probs=267.4
Q ss_pred ccccCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 122 FEDYFLKRELLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 122 ~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
+.++++++.+.+.|++ .||..|+|+|.++|+.+++++|+++.+|||+|||+||++|++.. .+.+||++|+++|
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~L 96 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLISL 96 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHHH
Confidence 3457788999999998 59999999999999999999999999999999999999999863 2389999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCCChHHHHHH------hcCCCeEEEEcchHHH------HhhhcCccccCCcceEEe
Q 011446 201 ALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR------LYQPVHLLVGTPGRIL------DLSKKGVCILKDCSMLVM 268 (485)
Q Consensus 201 a~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~------~~~~~~Ili~Tp~~l~------~~~~~~~~~l~~~~~iVi 268 (485)
+.|+.+.+.++ ++.+..+.|+....+.... .....+|+|+||++|. +.+.+ ...+.++++|||
T Consensus 97 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iVi 171 (591)
T 2v1x_A 97 MEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAV 171 (591)
T ss_dssp HHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEE
T ss_pred HHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEE
Confidence 99999998887 6778888888776544322 2457899999999874 22222 334678999999
Q ss_pred eccccccCCC--CHHHHHH--HHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeeh--hh
Q 011446 269 DEADKLLSPE--FQPSVEQ--LIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVE--ER 342 (485)
Q Consensus 269 DEah~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 342 (485)
||||++++++ |++.+.. .+....++.+++++|||++..+...+..++..+....+......+++...+.... ..
T Consensus 172 DEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~ 251 (591)
T 2v1x_A 172 DEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTE 251 (591)
T ss_dssp ETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHH
T ss_pred ECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHH
Confidence 9999999866 8887765 3445556899999999999998888888887665555555555555543332221 12
Q ss_pred hhHHHHHHHHHh-cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCC
Q 011446 343 QKVHCLNTLFSK-LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGI 421 (485)
Q Consensus 343 ~~~~~l~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gi 421 (485)
.+...+..++.. ...+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|..|+.+|||||+++++||
T Consensus 252 ~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GI 331 (591)
T 2v1x_A 252 DFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 331 (591)
T ss_dssp HHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTC
T ss_pred HHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCC
Confidence 344555555543 3567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChHHHHHHhhhccccCcccc
Q 011446 422 DIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 422 di~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~ 456 (485)
|+|+|++|||+++|.|.++|+||+|||||.|.-+.
T Consensus 332 D~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~ 366 (591)
T 2v1x_A 332 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKAD 366 (591)
T ss_dssp CCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEE
T ss_pred CcccccEEEEeCCCCCHHHHHHHhccCCcCCCCce
Confidence 99999999999999999999999999999986543
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.9e-50 Score=414.08 Aligned_cols=321 Identities=22% Similarity=0.253 Sum_probs=263.0
Q ss_pred cccccCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 121 EFEDYFLKRELLMGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
+|+++++++.+.+.+.+ .||..|+|+|.++|+.+++++|+++.+|||+|||++|++|++.. .+.+||++|+++
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~a 76 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLIS 76 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHH
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHH
Confidence 68899999999999998 79999999999999999999999999999999999999999854 137899999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEECCCChHHHHH----HhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeecccccc
Q 011446 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIM----RLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL 275 (485)
Q Consensus 200 la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~----~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~ 275 (485)
|+.|+.+.+.++ ++.+..+.++....+... ......+|+|+||++|............++++|||||||+++
T Consensus 77 L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 77 LMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (523)
T ss_dssp HHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred HHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC
Confidence 999998888765 677888888776544322 223568999999999854222112234688999999999998
Q ss_pred CCC--CHHHHHHH---HHhCCCCCcEEEEecccchHHHHHHHHhc--CCCeEEeeccccccccceEEEEeehhhhhHHHH
Q 011446 276 SPE--FQPSVEQL---IRFLPANRQILMFSATFPVTVKDFKDKYL--QKPYVINLMDELTLKGITQYYAFVEERQKVHCL 348 (485)
Q Consensus 276 ~~~--~~~~~~~i---~~~~~~~~~~i~~SATl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (485)
+++ |++.+..+ ...+ ++.+++++|||++..+...+...+ .++..+ ......+++. +.......+...+
T Consensus 153 ~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~--~~~~~r~~l~--~~v~~~~~~~~~l 227 (523)
T 1oyw_A 153 QWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ--ISSFDRPNIR--YMLMEKFKPLDQL 227 (523)
T ss_dssp TTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE--ECCCCCTTEE--EEEEECSSHHHHH
T ss_pred cCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE--eCCCCCCceE--EEEEeCCCHHHHH
Confidence 755 77777655 3333 568999999999987766555444 344333 2333344443 3344445666777
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCE
Q 011446 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (485)
Q Consensus 349 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (485)
..++.....+++||||++++.++.+++.|...++.+..+||+|++++|..+++.|.+|+.+|||||+++++|||+|++++
T Consensus 228 ~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~ 307 (523)
T 1oyw_A 228 MRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRF 307 (523)
T ss_dssp HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCE
T ss_pred HHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccE
Confidence 77887777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChHHHHHHhhhccccCcccc
Q 011446 429 VINFDFPKNSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~~~ 456 (485)
|||+++|.|.++|+||+|||||.|.-+.
T Consensus 308 VI~~~~p~s~~~y~Qr~GRaGR~g~~~~ 335 (523)
T 1oyw_A 308 VVHFDIPRNIESYYQETGRAGRDGLPAE 335 (523)
T ss_dssp EEESSCCSSHHHHHHHHTTSCTTSSCEE
T ss_pred EEEECCCCCHHHHHHHhccccCCCCCce
Confidence 9999999999999999999999986443
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-50 Score=417.02 Aligned_cols=357 Identities=29% Similarity=0.480 Sum_probs=255.9
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
++...++++.+.+.+.+.|+..|+++|.++++.++++ +++++++|||||||++|+++++..+.....++++||++|++
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 4556678889999999999999999999999999998 89999999999999999999999988776677999999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-C
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-P 277 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-~ 277 (485)
+|+.|+.+.+.+++...+..+....++..... ....++|+|+||++|...+......+.++++||+||||++.+ .
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccC
Confidence 99999999999998777766666555443321 234789999999999998887777789999999999999887 6
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc-ccccccceEEEEee-hhhhhHHHHHHHHHhc
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD-ELTLKGITQYYAFV-EERQKVHCLNTLFSKL 355 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~ 355 (485)
++...+..+...++.+.|++++|||++..+..+...+..++..+.... ......+...+... ....+...+..++...
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~ 355 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL 355 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc
Confidence 789999999999999999999999999989999999988887665543 23333444444433 4556777788888877
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFP 435 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p 435 (485)
..+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------CChHHHHHHhhhccccCcccccc--------hHHHHHHHHHhhccccccCCCCC
Q 011446 436 ------KNSETYLHRVCWIQLSFSLSLPN--------LQFMCSMLMYICFTDRLVDLEGL 481 (485)
Q Consensus 436 ------~s~~~~~Qr~GRagR~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l 481 (485)
.|...|+||+|||||.|+-+... ...+..+.++...++..++..++
T Consensus 436 ~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~ 495 (508)
T 3fho_A 436 LDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDY 495 (508)
T ss_dssp CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-------
T ss_pred CcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccH
Confidence 78999999999999987644331 34566677777777777765544
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1e-47 Score=386.48 Aligned_cols=303 Identities=17% Similarity=0.153 Sum_probs=242.9
Q ss_pred HHHHHHHc-CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHH
Q 011446 131 LLMGIFEK-GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCK 209 (485)
Q Consensus 131 l~~~l~~~-~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~ 209 (485)
+.+.+++. +| .|+|+|.++++.+++++++++++|||||||++|++|++..+. .++++||++|+++|+.|+.+.++
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHHH
Confidence 44445443 55 799999999999999999999999999999999999887663 34589999999999999999999
Q ss_pred HHhccCCceEEEEECCCCh---HHHHHHhcCC-CeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC---------
Q 011446 210 ELGKHLNIQVMVTTGGTSL---KDDIMRLYQP-VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS--------- 276 (485)
Q Consensus 210 ~~~~~~~~~v~~~~g~~~~---~~~~~~~~~~-~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~--------- 276 (485)
+++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++||+||||++..
T Consensus 86 ~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 86 KLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHH
Confidence 9887 88899999999987 4444555444 89999999999887764 4567899999999997643
Q ss_pred --CCCHHH-HHHHHHhCC-----------CCCcEEEEecc-cchHHH-HHHHHhcCCCeEEeeccccccccceEEEEeeh
Q 011446 277 --PEFQPS-VEQLIRFLP-----------ANRQILMFSAT-FPVTVK-DFKDKYLQKPYVINLMDELTLKGITQYYAFVE 340 (485)
Q Consensus 277 --~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT-l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (485)
.+|... +..++..++ .+.|++++||| .|..+. .+...++... .........++.+.+...
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~- 238 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT---VGRLVSVARNITHVRISS- 238 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCC---SSCCCCCCCSEEEEEESS-
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccC---cCccccccccchheeecc-
Confidence 678777 778887776 78999999999 554443 2333332210 011122234455554433
Q ss_pred hhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEE-EEcCCCCHHHHHHHHHHHhcCCccEEEE----cc
Q 011446 341 ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCF-YIHAKMLQDHRNRVFHDFRNGACRNLVC----TD 415 (485)
Q Consensus 341 ~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~r~~i~~~f~~g~~~vlva----T~ 415 (485)
.+...+..++... .+++||||++++.++.+++.|...++.+. .+||. +|. ++.|++|+.+|||| |+
T Consensus 239 --~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~ 309 (414)
T 3oiy_A 239 --RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYG 309 (414)
T ss_dssp --CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTC
T ss_pred --CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCc
Confidence 3455566666663 47999999999999999999999999998 88985 444 99999999999999 99
Q ss_pred ccccCCCCCC-CCEEEEcCCC--CChHHHHHHhhhccccCc
Q 011446 416 LFTRGIDIQA-VNVVINFDFP--KNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 416 ~~~~Gidi~~-v~~VI~~~~p--~s~~~~~Qr~GRagR~g~ 453 (485)
++++|+|+|+ +++||++|+| .|..+|+||+|||||.|.
T Consensus 310 ~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~ 350 (414)
T 3oiy_A 310 KLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILN 350 (414)
T ss_dssp CCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEET
T ss_pred hhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCC
Confidence 9999999999 9999999999 999999999999999874
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.5e-46 Score=401.17 Aligned_cols=322 Identities=21% Similarity=0.248 Sum_probs=254.5
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
..|+++++++.+.+.+.+.||..|+++|.++++. +.+++++++++|||||||+++.++++..+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 5799999999999999999999999999999999 77889999999999999999999999887643 34899999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (485)
+|+.|+++.++.+ ...++.+..++|+....... ...++|+||||++|..++.+....++++++||+||||++.+..
T Consensus 86 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 9999999988544 45688999999987665431 2378999999999999888876668999999999999988878
Q ss_pred CHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccc---------cceEEEEeeh--------h
Q 011446 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLK---------GITQYYAFVE--------E 341 (485)
Q Consensus 279 ~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--------~ 341 (485)
+...+..++..++ +.++|+||||++. ..++.. ++..+.+.......+.. .......+.. .
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGD 238 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccc
Confidence 8988888887776 8999999999974 344444 33332211111111100 0000011111 1
Q ss_pred hhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcC------------------------------------CeEE
Q 011446 342 RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELG------------------------------------YSCF 385 (485)
Q Consensus 342 ~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------------------~~~~ 385 (485)
......+..++. ..+++||||+++++++.++..|.+.. ..+.
T Consensus 239 ~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~ 316 (715)
T 2va8_A 239 DAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVA 316 (715)
T ss_dssp SHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEE
T ss_pred hHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEE
Confidence 233444444443 45799999999999999999998642 2489
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE----cC-------CCCChHHHHHHhhhccccC
Q 011446 386 YIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FD-------FPKNSETYLHRVCWIQLSF 452 (485)
Q Consensus 386 ~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~-------~p~s~~~~~Qr~GRagR~g 452 (485)
++||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |+ .|.|..+|.||+|||||.|
T Consensus 317 ~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g 394 (715)
T 2va8_A 317 YHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPG 394 (715)
T ss_dssp EECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTT
T ss_pred EECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999 88 8999999999999999987
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-46 Score=414.23 Aligned_cols=318 Identities=19% Similarity=0.198 Sum_probs=253.4
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
..|..+++++.+...+...++..|+++|.++++.+..++++|++||||||||++|.+|++..+.. +.+++|++|+++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~Ptra 238 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKA 238 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHH
Confidence 35666777777766666666778999999999999999999999999999999999999988854 348999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC
Q 011446 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (485)
Q Consensus 200 la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (485)
|+.|+++.+.+++. .++.++|+.... ..++|+|+||++|.+++.++...+.++++|||||||++.+.++
T Consensus 239 La~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~r 307 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKER 307 (1108)
T ss_dssp HHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHH
T ss_pred HHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccch
Confidence 99999999998765 567788887643 5689999999999999988777788999999999999998899
Q ss_pred HHHHHHHHHhCCCCCcEEEEecccchH--HHHHHHHhcCCCeEEeeccccccccceEEEEe---------ehh-------
Q 011446 280 QPSVEQLIRFLPANRQILMFSATFPVT--VKDFKDKYLQKPYVINLMDELTLKGITQYYAF---------VEE------- 341 (485)
Q Consensus 280 ~~~~~~i~~~~~~~~~~i~~SATl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------- 341 (485)
...+..++..++.+.|+|+||||+|.. ...++......+..+......+ ..+.+++.. +..
T Consensus 308 g~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp-~pl~~~~~~~~~~~~~~~vd~~~~~~~~ 386 (1108)
T 3l9o_A 308 GVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP-TPLQHYLFPAHGDGIYLVVDEKSTFREE 386 (1108)
T ss_dssp HHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS-SCEEEEEEETTSSCCEEEEETTTEECHH
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc-ccceEEEeecCCcceeeeeccccchhhh
Confidence 999999999999999999999998754 3355555555554433222111 112221110 000
Q ss_pred ---------------------------------------hhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCC
Q 011446 342 ---------------------------------------RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGY 382 (485)
Q Consensus 342 ---------------------------------------~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~ 382 (485)
..+...+...+.....+++||||++++.|+.++..|...++
T Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~ 466 (1108)
T 3l9o_A 387 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 466 (1108)
T ss_dssp HHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHH
T ss_pred hHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccC
Confidence 11222233344445667999999999999999998865322
Q ss_pred e---------------------------------------EEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCC
Q 011446 383 S---------------------------------------CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDI 423 (485)
Q Consensus 383 ~---------------------------------------~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi 423 (485)
. +.++||+|++.+|..+++.|++|.++|||||+++++|||+
T Consensus 467 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDi 546 (1108)
T 3l9o_A 467 NSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM 546 (1108)
T ss_dssp HCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC
T ss_pred CCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCC
Confidence 2 7899999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCC--------CCChHHHHHHhhhccccC
Q 011446 424 QAVNVVINFDF--------PKNSETYLHRVCWIQLSF 452 (485)
Q Consensus 424 ~~v~~VI~~~~--------p~s~~~~~Qr~GRagR~g 452 (485)
|++++||+++. |.|..+|+||+|||||.|
T Consensus 547 P~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 547 PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp --CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred CCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 99999997776 447788999999999998
No 21
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3e-46 Score=400.35 Aligned_cols=319 Identities=19% Similarity=0.264 Sum_probs=258.5
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
.|.++++++.+.+.+.+.||..|+++|.++++. +.+++++++++|||||||++|.+|++..+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 588999999999999999999999999999998 88899999999999999999999999887643 348999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCC
Q 011446 200 LALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEF 279 (485)
Q Consensus 200 la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~ 279 (485)
|+.|+++.++++. ..++++..++|+...... ....++|+||||++|..++.+....++++++||+||||++.+..+
T Consensus 80 La~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 9999999886543 458899999997765432 124689999999999998887766688999999999999988889
Q ss_pred HHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEE------EEeeh-----hhhhHHHH
Q 011446 280 QPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQY------YAFVE-----ERQKVHCL 348 (485)
Q Consensus 280 ~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~~l 348 (485)
...+..++..++.+.++|+||||++. ..++.. ++..+.+....... .+... ..... ...+...+
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~rp~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAELIVSDWRPV---KLRRGVFYQGFVTWEDGSIDRFSSWEELV 230 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEEEEECCCCSS---EEEEEEEETTEEEETTSCEEECSSTTHHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCcccCCCCCCC---cceEEEEeCCeeeccccchhhhhHHHHHH
Confidence 99999999888778999999999974 444444 44322111110111 11111 11111 22334445
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHHc---------------------------------CCeEEEEcCCCCHHH
Q 011446 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITEL---------------------------------GYSCFYIHAKMLQDH 395 (485)
Q Consensus 349 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------------------------------~~~~~~~h~~~~~~~ 395 (485)
..++. ..+++||||++++.|+.++..|.+. ...+.++||+|++++
T Consensus 231 ~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 308 (720)
T 2zj8_A 231 YDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDE 308 (720)
T ss_dssp HHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred HHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHH
Confidence 54443 4579999999999999999998753 124899999999999
Q ss_pred HHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE----cC----CCCChHHHHHHhhhccccC
Q 011446 396 RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FD----FPKNSETYLHRVCWIQLSF 452 (485)
Q Consensus 396 r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~----~p~s~~~~~Qr~GRagR~g 452 (485)
|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.|
T Consensus 309 R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g 373 (720)
T 2zj8_A 309 RVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPK 373 (720)
T ss_dssp HHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTT
T ss_pred HHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999998 66 5899999999999999977
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.4e-46 Score=401.81 Aligned_cols=321 Identities=19% Similarity=0.258 Sum_probs=253.8
Q ss_pred cccccC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 121 EFEDYF--LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 121 ~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
+|++++ +++.+.+.+.+.||..|+++|.++++.+.+++++++++|||||||++|.++++..+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 477777 8999999999999999999999999999999999999999999999999999988764 34899999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (485)
+|+.|+++.++++ ...++++..++|+...... ....++|+||||++|..++.+....++++++||+||||++.+.+
T Consensus 79 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 9999999988543 4568899999998765532 12478999999999999888876668899999999999998888
Q ss_pred CHHHHHHHHHhC---CCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccc---eEEEEeehhh-------hhH
Q 011446 279 FQPSVEQLIRFL---PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGI---TQYYAFVEER-------QKV 345 (485)
Q Consensus 279 ~~~~~~~i~~~~---~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------~~~ 345 (485)
+...+..++..+ .++.|+|+||||++. ..++.. ++..+.+.......+.... .......... ...
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFE 232 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHH
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHH
Confidence 888888776655 578999999999984 455544 4443322111111111000 0000111111 144
Q ss_pred HHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHc------------------------------CCeEEEEcCCCCHHH
Q 011446 346 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITEL------------------------------GYSCFYIHAKMLQDH 395 (485)
Q Consensus 346 ~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~------------------------------~~~~~~~h~~~~~~~ 395 (485)
..+...+. ..+++||||+++++++.++..|.+. +..+.++||+|++++
T Consensus 233 ~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 310 (702)
T 2p6r_A 233 ELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQ 310 (702)
T ss_dssp HHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHH
T ss_pred HHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHH
Confidence 45555443 4679999999999999999998753 235889999999999
Q ss_pred HHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE----cC---CCCChHHHHHHhhhccccC
Q 011446 396 RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FD---FPKNSETYLHRVCWIQLSF 452 (485)
Q Consensus 396 r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~---~p~s~~~~~Qr~GRagR~g 452 (485)
|..+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|.||+|||||.|
T Consensus 311 R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g 374 (702)
T 2p6r_A 311 RRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPG 374 (702)
T ss_dssp HHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTT
T ss_pred HHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCC
Confidence 999999999999999999999999999999999998 55 7899999999999999987
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.1e-45 Score=395.89 Aligned_cols=318 Identities=17% Similarity=0.163 Sum_probs=208.7
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCC--ceEEEEEcCcHHHHHHHHHHHHH
Q 011446 133 MGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 133 ~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~ 210 (485)
..+...|+..|+++|.++++.++.++++|+++|||+|||++|++|++..+..... +.++||++|+++|+.|+.+.+++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4566779999999999999999999999999999999999999999988765432 25899999999999999999999
Q ss_pred HhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCcc-ccCCcceEEeeccccccCCC-CHHHHHHHHH
Q 011446 211 LGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-ILKDCSMLVMDEADKLLSPE-FQPSVEQLIR 288 (485)
Q Consensus 211 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~-~l~~~~~iViDEah~~~~~~-~~~~~~~i~~ 288 (485)
++...++.+..++|+.........+...++|+|+||++|.+.+..... .+.++++|||||||++.+.. +...+...+.
T Consensus 84 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~ 163 (696)
T 2ykg_A 84 YFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLD 163 (696)
T ss_dssp HTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHH
Confidence 998888999999998866555555556789999999999998887655 68899999999999987654 2222222222
Q ss_pred h-----CCCCCcEEEEecccc-------hHHHHHHHH----------------------hcCCCeEEeecccc-------
Q 011446 289 F-----LPANRQILMFSATFP-------VTVKDFKDK----------------------YLQKPYVINLMDEL------- 327 (485)
Q Consensus 289 ~-----~~~~~~~i~~SATl~-------~~~~~~~~~----------------------~~~~~~~~~~~~~~------- 327 (485)
. ..+..++|+||||+. ....+.+.. +...|.........
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 2 246789999999986 111111111 11112111000000
Q ss_pred ---c----------------------------------------------------------------------------
Q 011446 328 ---T---------------------------------------------------------------------------- 328 (485)
Q Consensus 328 ---~---------------------------------------------------------------------------- 328 (485)
.
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence 0
Q ss_pred --------------------------cccceEEEEe----------------ehhhhhHHHHHHHHHhc----CCCcEEE
Q 011446 329 --------------------------LKGITQYYAF----------------VEERQKVHCLNTLFSKL----QINQSII 362 (485)
Q Consensus 329 --------------------------~~~~~~~~~~----------------~~~~~~~~~l~~l~~~~----~~~~~lV 362 (485)
...+.+.+.. .....+...+..++... ..+++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 0000000000 01234556666666654 5679999
Q ss_pred EecChhHHHHHHHHHHHcC----CeEEEE--------cCCCCHHHHHHHHHHHhc-CCccEEEEccccccCCCCCCCCEE
Q 011446 363 FCNSVNRVELLAKKITELG----YSCFYI--------HAKMLQDHRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVV 429 (485)
Q Consensus 363 f~~~~~~~~~l~~~L~~~~----~~~~~~--------h~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~V 429 (485)
||++++.++.+++.|...+ +.+..+ |++|++.+|..+++.|++ |+.+|||||+++++|||+|++++|
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~V 483 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLV 483 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEE
T ss_pred EeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEE
Confidence 9999999999999999987 788888 569999999999999998 999999999999999999999999
Q ss_pred EEcCCCCChHHHHHHhhhcccc
Q 011446 430 INFDFPKNSETYLHRVCWIQLS 451 (485)
Q Consensus 430 I~~~~p~s~~~~~Qr~GRagR~ 451 (485)
|+||+|.|..+|+||+|| ||.
T Consensus 484 I~~d~p~s~~~~~Qr~GR-GR~ 504 (696)
T 2ykg_A 484 ILYEYVGNVIKMIQTRGR-GRA 504 (696)
T ss_dssp EEESCC--CCCC----------
T ss_pred EEeCCCCCHHHHHHhhcc-CcC
Confidence 999999999999999999 996
No 24
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.4e-44 Score=375.71 Aligned_cols=311 Identities=17% Similarity=0.210 Sum_probs=190.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCC--ceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
...|+|+|.++++.++.++++++++|||+|||++|++|++..+..... +.++||++|+++|+.|+.+.+.+++...++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 457999999999999999999999999999999999999988876432 568999999999999999999999988899
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCcc-ccCCcceEEeeccccccCCCCHHHHH-HHHHh----CC
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-ILKDCSMLVMDEADKLLSPEFQPSVE-QLIRF----LP 291 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~-~l~~~~~iViDEah~~~~~~~~~~~~-~i~~~----~~ 291 (485)
.+..++|+.........+..+++|+|+||++|.+++..... .+.++++||+||||++.+.+....+. .++.. ..
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 164 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSAS 164 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC--
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccC
Confidence 99999999876665555556789999999999998887666 68899999999999998766433322 22221 14
Q ss_pred CCCcEEEEecccch-----------HHHHHHHH------------------hcCCCeEEeecccccccc-----------
Q 011446 292 ANRQILMFSATFPV-----------TVKDFKDK------------------YLQKPYVINLMDELTLKG----------- 331 (485)
Q Consensus 292 ~~~~~i~~SATl~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~~~----------- 331 (485)
+..++++||||++. .+..+... +...|.............
T Consensus 165 ~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (556)
T 4a2p_A 165 QLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMS 244 (556)
T ss_dssp -CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHH
Confidence 56889999999842 11111111 111111111100000000
Q ss_pred -----------ceEEEE-------------ee------------------------------------------------
Q 011446 332 -----------ITQYYA-------------FV------------------------------------------------ 339 (485)
Q Consensus 332 -----------~~~~~~-------------~~------------------------------------------------ 339 (485)
...... .+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (556)
T 4a2p_A 245 ETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARII 324 (556)
T ss_dssp HHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 000000 00
Q ss_pred --------------------------------------------hhhhhHHHHHHHHHh----cCCCcEEEEecChhHHH
Q 011446 340 --------------------------------------------EERQKVHCLNTLFSK----LQINQSIIFCNSVNRVE 371 (485)
Q Consensus 340 --------------------------------------------~~~~~~~~l~~l~~~----~~~~~~lVf~~~~~~~~ 371 (485)
....|...+..++.. ....++||||++++.++
T Consensus 325 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~ 404 (556)
T 4a2p_A 325 DALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVS 404 (556)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHH
Confidence 012244444445443 45679999999999999
Q ss_pred HHHHHHHHc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCccEEEEccccccCCCCCCCCEEEEcCCCCCh
Q 011446 372 LLAKKITEL------------GYSCFYIHAKMLQDHRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVVINFDFPKNS 438 (485)
Q Consensus 372 ~l~~~L~~~------------~~~~~~~h~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~ 438 (485)
.+++.|... |.....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+||+|+|.
T Consensus 405 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~ 484 (556)
T 4a2p_A 405 ALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNV 484 (556)
T ss_dssp HHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSCH
T ss_pred HHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCH
Confidence 999999775 4556677888999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccc
Q 011446 439 ETYLHRVCWIQLS 451 (485)
Q Consensus 439 ~~~~Qr~GRagR~ 451 (485)
..|+||+|| ||.
T Consensus 485 ~~~~Qr~GR-gR~ 496 (556)
T 4a2p_A 485 TKMIQVRGR-GRA 496 (556)
T ss_dssp HHHHHC-------
T ss_pred HHHHHhcCC-CCC
Confidence 999999999 997
No 25
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-43 Score=384.29 Aligned_cols=300 Identities=20% Similarity=0.243 Sum_probs=241.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.+| .|+++|.++++.+..++++++++|||||||++|.++++..+.. +.++||++|+++|+.|+++.+.+++.
T Consensus 83 ~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~---- 154 (1010)
T 2xgj_A 83 YPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG---- 154 (1010)
T ss_dssp CSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS----
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC----
Confidence 356 4999999999999999999999999999999999999887753 34999999999999999999988765
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEE
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 297 (485)
.++.++|+.... ...+|+|+||++|..++.++...+.++++|||||||++.+.++...+..++..++.+.++|
T Consensus 155 ~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il 227 (1010)
T 2xgj_A 155 DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV 227 (1010)
T ss_dssp CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEE
T ss_pred CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEE
Confidence 577788887654 4679999999999998888777789999999999999999999999999999999999999
Q ss_pred EEecccchHHH--HHHHHhcCCCeEEeeccccccccceEEEEe---------ehh-------------------------
Q 011446 298 MFSATFPVTVK--DFKDKYLQKPYVINLMDELTLKGITQYYAF---------VEE------------------------- 341 (485)
Q Consensus 298 ~~SATl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~------------------------- 341 (485)
+||||++.... .++......+..+...... ...+.+++.. .+.
T Consensus 228 ~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r-p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 306 (1010)
T 2xgj_A 228 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFR-PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPN 306 (1010)
T ss_dssp EEECCCTTHHHHHHHHHHHHTSCEEEEEECCC-SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--------
T ss_pred EEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC-cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccc
Confidence 99999975422 2333233334333222211 1122222211 000
Q ss_pred ---------------------hhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCC------------------
Q 011446 342 ---------------------RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGY------------------ 382 (485)
Q Consensus 342 ---------------------~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~------------------ 382 (485)
......+...+......++||||+++..|+.++..|...++
T Consensus 307 ~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 386 (1010)
T 2xgj_A 307 STDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA 386 (1010)
T ss_dssp ----------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 11122233334444556999999999999999999876433
Q ss_pred ---------------------eEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE----cCC---
Q 011446 383 ---------------------SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FDF--- 434 (485)
Q Consensus 383 ---------------------~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~~--- 434 (485)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.
T Consensus 387 ~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~ 466 (1010)
T 2xgj_A 387 LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQF 466 (1010)
T ss_dssp TSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCE
T ss_pred hcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCC
Confidence 2788999999999999999999999999999999999999999999999 998
Q ss_pred -CCChHHHHHHhhhccccCc
Q 011446 435 -PKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 435 -p~s~~~~~Qr~GRagR~g~ 453 (485)
|.|..+|+||+|||||.|.
T Consensus 467 rp~s~~~y~Qr~GRAGR~G~ 486 (1010)
T 2xgj_A 467 RWVSGGEYIQMSGRAGRRGL 486 (1010)
T ss_dssp EECCHHHHHHHHTTBCCTTT
T ss_pred ccCCHHHHhHhhhhcccCCC
Confidence 8999999999999999985
No 26
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.9e-44 Score=394.34 Aligned_cols=279 Identities=17% Similarity=0.159 Sum_probs=227.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.|| .|+++|.++++.++.++|++++||||||||++|+++++..+. .++++||++|+++|+.|+++.+.+++ ..++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i 149 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLA-DEKV 149 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTS-CTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhh-CCCC
Confidence 477 699999999999999999999999999999998888887763 34589999999999999999999977 7788
Q ss_pred eEEEEECCCCh---HHHHHHhcCC-CeEEEEcchHHHHhhhcCccccCCcceEEeeccccccC-----------CCCHHH
Q 011446 218 QVMVTTGGTSL---KDDIMRLYQP-VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLS-----------PEFQPS 282 (485)
Q Consensus 218 ~v~~~~g~~~~---~~~~~~~~~~-~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~-----------~~~~~~ 282 (485)
.+..++|+.+. ..+...+..+ ++|+|+||++|.+++.. ..+.++++|||||||++.. .+|...
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 99999999987 5566666655 99999999999887764 5577899999999987654 678877
Q ss_pred -HHHHHHhCC-----------CCCcEEEEecc-cchHHHH-HHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHH
Q 011446 283 -VEQLIRFLP-----------ANRQILMFSAT-FPVTVKD-FKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCL 348 (485)
Q Consensus 283 -~~~i~~~~~-----------~~~~~i~~SAT-l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 348 (485)
+..++..++ .+.|++++||| .|..+.. +....+.. ..........++.+.+... .+...+
T Consensus 228 ~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i---~v~~~~~~~~~i~~~~~~~---~k~~~L 301 (1104)
T 4ddu_A 228 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF---TVGRLVSVARNITHVRISS---RSKEKL 301 (1104)
T ss_dssp HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCC---CCCBCCCCCCCEEEEEESC---CCHHHH
T ss_pred HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeE---EeccCCCCcCCceeEEEec---CHHHHH
Confidence 888888776 78999999999 5544432 23333321 1111223344555555544 355556
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEE-EEcCCCCHHHHHHHHHHHhcCCccEEEE----ccccccCCCC
Q 011446 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCF-YIHAKMLQDHRNRVFHDFRNGACRNLVC----TDLFTRGIDI 423 (485)
Q Consensus 349 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~-~~h~~~~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gidi 423 (485)
..++... .+++||||++++.++.+++.|...++.+. .+||. |.+ ++.|++|+.+|||| |+++++|||+
T Consensus 302 ~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDi 374 (1104)
T 4ddu_A 302 VELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDL 374 (1104)
T ss_dssp HHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCC
T ss_pred HHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcC
Confidence 6666663 48999999999999999999999999998 99983 555 99999999999999 9999999999
Q ss_pred CC-CCEEEEcCCCC
Q 011446 424 QA-VNVVINFDFPK 436 (485)
Q Consensus 424 ~~-v~~VI~~~~p~ 436 (485)
|+ |++|||||+|.
T Consensus 375 p~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 375 PERIKYVIFWGTPS 388 (1104)
T ss_dssp TTTCCEEEEESCCE
T ss_pred CCCCCEEEEECCCC
Confidence 99 99999999998
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=7.9e-44 Score=371.67 Aligned_cols=308 Identities=18% Similarity=0.180 Sum_probs=213.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCC--ceEEEEEcCcHHHHHHHHHHHHHHhccCCceE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v 219 (485)
.|+|+|.++++.++.++++++++|||+|||++|++|++..+..... +.++||++|+++|+.|+.+.+.+++...++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 6999999999999999999999999999999999999998876432 55899999999999999999999998889999
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCcc-ccCCcceEEeeccccccCCCC-HHHHHHHHHhC-----CC
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-ILKDCSMLVMDEADKLLSPEF-QPSVEQLIRFL-----PA 292 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~-~l~~~~~iViDEah~~~~~~~-~~~~~~i~~~~-----~~ 292 (485)
..++|+.........+..+++|+|+||++|..++..... .+.++++||+||||++.+.+. ...+...+... .+
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999876665555556789999999999998887655 688999999999999987642 22222333321 25
Q ss_pred CCcEEEEecccchH-----------HHHHHHHhcCCCeEEeeccc-------cccccceEEEEe----------------
Q 011446 293 NRQILMFSATFPVT-----------VKDFKDKYLQKPYVINLMDE-------LTLKGITQYYAF---------------- 338 (485)
Q Consensus 293 ~~~~i~~SATl~~~-----------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---------------- 338 (485)
..+++++|||++.. +..+.. .+..+.+...... ...+........
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMK 242 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHH
Confidence 67899999998431 111111 1221111111000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011446 339 -------------------------------------------------------------------------------- 338 (485)
Q Consensus 339 -------------------------------------------------------------------------------- 338 (485)
T Consensus 243 ~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 322 (555)
T 3tbk_A 243 ETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQM 322 (555)
T ss_dssp HHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence
Q ss_pred --------------------------------------------ehhhhhHHHHHHHHHh----cCCCcEEEEecChhHH
Q 011446 339 --------------------------------------------VEERQKVHCLNTLFSK----LQINQSIIFCNSVNRV 370 (485)
Q Consensus 339 --------------------------------------------~~~~~~~~~l~~l~~~----~~~~~~lVf~~~~~~~ 370 (485)
.....|...+..++.. ....++||||++++.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~ 402 (555)
T 3tbk_A 323 TDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALV 402 (555)
T ss_dssp HHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHH
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHH
Confidence 0012244444444443 3567999999999999
Q ss_pred HHHHHHHHHcC------------CeEEEEcCCCCHHHHHHHHHHHhc-CCccEEEEccccccCCCCCCCCEEEEcCCCCC
Q 011446 371 ELLAKKITELG------------YSCFYIHAKMLQDHRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVVINFDFPKN 437 (485)
Q Consensus 371 ~~l~~~L~~~~------------~~~~~~h~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s 437 (485)
+.+++.|...+ .....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+||+|+|
T Consensus 403 ~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s 482 (555)
T 3tbk_A 403 DALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGN 482 (555)
T ss_dssp HHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSS
T ss_pred HHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCC
Confidence 99999998863 344556679999999999999999 99999999999999999999999999999999
Q ss_pred hHHHHHHhhhcccc
Q 011446 438 SETYLHRVCWIQLS 451 (485)
Q Consensus 438 ~~~~~Qr~GRagR~ 451 (485)
+..|+||+|| ||.
T Consensus 483 ~~~~~Qr~GR-gR~ 495 (555)
T 3tbk_A 483 VIKMIQTRGR-GRA 495 (555)
T ss_dssp CCCEECSSCC-CTT
T ss_pred HHHHHHhcCc-CcC
Confidence 9999999999 886
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.7e-43 Score=379.23 Aligned_cols=313 Identities=18% Similarity=0.222 Sum_probs=197.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCC--ceEEEEEcCcHHHHHHHHHHHHHHhccC
Q 011446 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKELGKHL 215 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~~~~~ 215 (485)
.|+..|+|+|.++++.++.++++++++|||+|||++|++|++..+..... +.++||++|+++|+.|+.+.+++++...
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccC
Confidence 46889999999999999999999999999999999999999998876432 5689999999999999999999999888
Q ss_pred CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCcc-ccCCcceEEeeccccccCCCCHHHH-HHHHHh----
Q 011446 216 NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-ILKDCSMLVMDEADKLLSPEFQPSV-EQLIRF---- 289 (485)
Q Consensus 216 ~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~-~l~~~~~iViDEah~~~~~~~~~~~-~~i~~~---- 289 (485)
++.+..++|+.........+..+++|+|+||++|.+.+..... .+.++++|||||||++.+......+ ..++..
T Consensus 324 ~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (797)
T 4a2q_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (797)
T ss_dssp TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTT
T ss_pred CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 9999999999877766666667899999999999998887665 6889999999999998875433222 222222
Q ss_pred CCCCCcEEEEecccch-----------HHHHHHH------------------HhcCCCeEEeecccccc-cc--------
Q 011446 290 LPANRQILMFSATFPV-----------TVKDFKD------------------KYLQKPYVINLMDELTL-KG-------- 331 (485)
Q Consensus 290 ~~~~~~~i~~SATl~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~-~~-------- 331 (485)
..+..+++++|||+.. .+..+.. .++..|........... ..
T Consensus 404 ~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 483 (797)
T 4a2q_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483 (797)
T ss_dssp CCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHH
T ss_pred CCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHH
Confidence 1556889999999842 2222111 11122211110000000 00
Q ss_pred ----------------ceEE----EE------ee----------------------------------------------
Q 011446 332 ----------------ITQY----YA------FV---------------------------------------------- 339 (485)
Q Consensus 332 ----------------~~~~----~~------~~---------------------------------------------- 339 (485)
+... +. .+
T Consensus 484 ~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 563 (797)
T 4a2q_A 484 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 563 (797)
T ss_dssp HHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 0000 00 00
Q ss_pred ----------------------------------------------hhhhhHHHHHHHHHh----cCCCcEEEEecChhH
Q 011446 340 ----------------------------------------------EERQKVHCLNTLFSK----LQINQSIIFCNSVNR 369 (485)
Q Consensus 340 ----------------------------------------------~~~~~~~~l~~l~~~----~~~~~~lVf~~~~~~ 369 (485)
....|...+..++.. ....++||||+++..
T Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~ 643 (797)
T 4a2q_A 564 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 643 (797)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHH
Confidence 002234444445543 456799999999999
Q ss_pred HHHHHHHHHHc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCccEEEEccccccCCCCCCCCEEEEcCCCC
Q 011446 370 VELLAKKITEL------------GYSCFYIHAKMLQDHRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (485)
Q Consensus 370 ~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (485)
++.+++.|... |.....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+||+|+
T Consensus 644 ~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~ 723 (797)
T 4a2q_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 723 (797)
T ss_dssp HHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCS
T ss_pred HHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCC
Confidence 99999999873 5566778999999999999999999 9999999999999999999999999999999
Q ss_pred ChHHHHHHhhhcccc
Q 011446 437 NSETYLHRVCWIQLS 451 (485)
Q Consensus 437 s~~~~~Qr~GRagR~ 451 (485)
|...|+||+|| ||.
T Consensus 724 s~~~~iQr~GR-GR~ 737 (797)
T 4a2q_A 724 NVTKMIQVRGR-GRA 737 (797)
T ss_dssp CHHHHHTC-------
T ss_pred CHHHHHHhcCC-CCC
Confidence 99999999999 997
No 29
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=7.5e-43 Score=381.15 Aligned_cols=296 Identities=16% Similarity=0.195 Sum_probs=237.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+++|.++|+.+++++++++++|||||||++|++++...+.. +.++||++|+++|+.|+++.+.+++. +..+..
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~ 113 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--DVNIGL 113 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----CCEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEE
Confidence 5899999999999999999999999999999999998877653 34899999999999999998887653 577888
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
++|+.... ...+|+|+||++|.+++......+.++++|||||||++.+.++...+..++..++++.++|++||
T Consensus 114 l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSA 186 (997)
T 4a4z_A 114 ITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSA 186 (997)
T ss_dssp ECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEEC
T ss_pred EeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcC
Confidence 88887643 56899999999999988877777889999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhcC---CCeEEeeccccccccceEEEE-----------------------------------------
Q 011446 302 TFPVTVKDFKDKYLQ---KPYVINLMDELTLKGITQYYA----------------------------------------- 337 (485)
Q Consensus 302 Tl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 337 (485)
|++... ++...+.. .+..+ +........+.+++.
T Consensus 187 T~~n~~-ef~~~l~~~~~~~~~v-i~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 264 (997)
T 4a4z_A 187 TVPNTY-EFANWIGRTKQKNIYV-ISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDN 264 (997)
T ss_dssp CCTTHH-HHHHHHHHHHTCCEEE-EECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------
T ss_pred CCCChH-HHHHHHhcccCCceEE-EecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccc
Confidence 987433 44443321 11111 111111111111110
Q ss_pred ----------------------------------------------------eehhhhhHHHHHHHHHhcCCCcEEEEec
Q 011446 338 ----------------------------------------------------FVEERQKVHCLNTLFSKLQINQSIIFCN 365 (485)
Q Consensus 338 ----------------------------------------------------~~~~~~~~~~l~~l~~~~~~~~~lVf~~ 365 (485)
......+...+...+......++||||+
T Consensus 265 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~ 344 (997)
T 4a4z_A 265 GRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVF 344 (997)
T ss_dssp ----------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEEC
Confidence 0011223445566666667789999999
Q ss_pred ChhHHHHHHHHHHHcCC---------------------------------------eEEEEcCCCCHHHHHHHHHHHhcC
Q 011446 366 SVNRVELLAKKITELGY---------------------------------------SCFYIHAKMLQDHRNRVFHDFRNG 406 (485)
Q Consensus 366 ~~~~~~~l~~~L~~~~~---------------------------------------~~~~~h~~~~~~~r~~i~~~f~~g 406 (485)
+++.|+.++..|...++ .+.++||+|++.+|..+++.|..|
T Consensus 345 sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G 424 (997)
T 4a4z_A 345 SKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKG 424 (997)
T ss_dssp CHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCC
Confidence 99999999999976554 578999999999999999999999
Q ss_pred CccEEEEccccccCCCCCCCCEEEEcCCCC---------ChHHHHHHhhhccccC
Q 011446 407 ACRNLVCTDLFTRGIDIQAVNVVINFDFPK---------NSETYLHRVCWIQLSF 452 (485)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~---------s~~~~~Qr~GRagR~g 452 (485)
.++|||||+++++|||+|+ ..||+++.|+ |..+|+||+|||||.|
T Consensus 425 ~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G 478 (997)
T 4a4z_A 425 FIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG 478 (997)
T ss_dssp CCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTT
T ss_pred CCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCC
Confidence 9999999999999999999 6777777766 9999999999999987
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.3e-43 Score=357.30 Aligned_cols=308 Identities=17% Similarity=0.194 Sum_probs=237.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+|+|.++++.++.+ ++++.+|||+|||++++.+++..+. ..+.++||+||+++|+.|+.+.+.++....+..+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 6899999999999999 9999999999999999999888776 234489999999999999999999887544558888
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
++|+....... .....++|+|+||+.|...+......+.++++||+||||++.+......+...+....+..++++|||
T Consensus 86 ~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 88887766433 33346799999999999988877777889999999999998876555555555555667889999999
Q ss_pred ccchH---HHHHHHHhcCCCeEEeeccc-----cccccceEEEEe-----------------------------------
Q 011446 302 TFPVT---VKDFKDKYLQKPYVINLMDE-----LTLKGITQYYAF----------------------------------- 338 (485)
Q Consensus 302 Tl~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----------------------------------- 338 (485)
|+... +..+...+............ ........+...
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 98633 33333322211110000000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 011446 339 -------------------------------------------------------------------------------- 338 (485)
Q Consensus 339 -------------------------------------------------------------------------------- 338 (485)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence
Q ss_pred --------------ehhhhhHHHHHHHHHh----cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcC--------CCC
Q 011446 339 --------------VEERQKVHCLNTLFSK----LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHA--------KML 392 (485)
Q Consensus 339 --------------~~~~~~~~~l~~l~~~----~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~--------~~~ 392 (485)
.....|...+..++.. ....++||||++++.++.+++.|...++.+..+|| +|+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC
Confidence 0112244555556655 46779999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCc
Q 011446 393 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 393 ~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~ 453 (485)
..+|..+++.|++|..+|||||+++++|+|+|++++||++++|+|...|.||+|||||.|.
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~ 465 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP 465 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.2e-43 Score=390.76 Aligned_cols=280 Identities=15% Similarity=0.255 Sum_probs=221.6
Q ss_pred HHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 133 MGIFE-KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 133 ~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
+.+.+ .||. | ++|.++++.++.++|+++++|||||||+ |.+|++..+.. .++++||++||++|+.|+.+.++++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 44444 6998 9 9999999999999999999999999998 88898887764 3458999999999999999999999
Q ss_pred hccCCc----eEEEEECCCChHHH---HHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHH
Q 011446 212 GKHLNI----QVMVTTGGTSLKDD---IMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVE 284 (485)
Q Consensus 212 ~~~~~~----~v~~~~g~~~~~~~---~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (485)
+...++ .+..++|+.+...+ ...+.. ++|+|+||++|.+++.+ +.++++||+||||++++ +...+.
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHH
Confidence 988888 89999999887663 334444 89999999999997765 67899999999999987 677888
Q ss_pred HHHHhC-----------CCCCcEEEEecccchHHHHHHHHhcCCCeEEeec-cccccccceEEEEeehhhhhHHHHHHHH
Q 011446 285 QLIRFL-----------PANRQILMFSATFPVTVKDFKDKYLQKPYVINLM-DELTLKGITQYYAFVEERQKVHCLNTLF 352 (485)
Q Consensus 285 ~i~~~~-----------~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 352 (485)
.++..+ +...|++++|||++.. ..+...++..+..+.+. ......++.+.+. ...+...+..++
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll 271 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSIL 271 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHHH
Confidence 887776 3567899999999876 43333333322222222 1223344544443 344555666677
Q ss_pred HhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEE----ccccccCCCCCCC-C
Q 011446 353 SKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVC----TDLFTRGIDIQAV-N 427 (485)
Q Consensus 353 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlva----T~~~~~Gidi~~v-~ 427 (485)
... .+++||||++++.|+.+++.|... +.+..+||++ ..+++.|++|+.+|||| |+++++|||+|+| +
T Consensus 272 ~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~ 344 (1054)
T 1gku_B 272 EKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIR 344 (1054)
T ss_dssp TTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCC
T ss_pred hhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCccc
Confidence 665 478999999999999999999888 9999999998 37889999999999999 9999999999996 9
Q ss_pred EEEEcCCC
Q 011446 428 VVINFDFP 435 (485)
Q Consensus 428 ~VI~~~~p 435 (485)
+||++|+|
T Consensus 345 ~VI~~~~P 352 (1054)
T 1gku_B 345 FAVFVGCP 352 (1054)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 99999999
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.9e-44 Score=381.70 Aligned_cols=313 Identities=21% Similarity=0.274 Sum_probs=221.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC---CceEEEEEcCcHHHHHHH-HHHHHHHhccCCc
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---NVIQVVILVPTRELALQT-SQVCKELGKHLNI 217 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~P~~~la~q~-~~~~~~~~~~~~~ 217 (485)
.|+++|.++++.++.++++++.+|||+|||++|++|++..+.... .+.++||++|+++|+.|+ .+.+++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 799999999999999999999999999999999999998876532 225899999999999999 9999998765 47
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhh------hcCccccCCcceEEeeccccccCCC-CHHHHHHHHHhC
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLS------KKGVCILKDCSMLVMDEADKLLSPE-FQPSVEQLIRFL 290 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~------~~~~~~l~~~~~iViDEah~~~~~~-~~~~~~~i~~~~ 290 (485)
.+..++|+.........+....+|+|+||++|.+.+ ......+.++++|||||||++.... +...+..++...
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 888999987766555555578899999999999877 3444567899999999999886544 333333232221
Q ss_pred -------------CCCCcEEEEecccchH-----------HHHHHHHh------------------cCCCeEEeeccccc
Q 011446 291 -------------PANRQILMFSATFPVT-----------VKDFKDKY------------------LQKPYVINLMDELT 328 (485)
Q Consensus 291 -------------~~~~~~i~~SATl~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~ 328 (485)
.+..++|+||||+... +..+...+ ...|..........
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 1567899999998751 12121111 11111111000000
Q ss_pred cc---------------------cceEE----------------------------------------------------
Q 011446 329 LK---------------------GITQY---------------------------------------------------- 335 (485)
Q Consensus 329 ~~---------------------~~~~~---------------------------------------------------- 335 (485)
.. ....+
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000
Q ss_pred -----------------------EEeeh-------------------------hhhhH----HHHHHHHHhcC-CCcEEE
Q 011446 336 -----------------------YAFVE-------------------------ERQKV----HCLNTLFSKLQ-INQSII 362 (485)
Q Consensus 336 -----------------------~~~~~-------------------------~~~~~----~~l~~l~~~~~-~~~~lV 362 (485)
..... ...|. ..+...+...+ .+++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 00000 00111 11222222223 679999
Q ss_pred EecChhHHHHHHHHHHHc------CCeEEEEcCC--------CCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCE
Q 011446 363 FCNSVNRVELLAKKITEL------GYSCFYIHAK--------MLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV 428 (485)
Q Consensus 363 f~~~~~~~~~l~~~L~~~------~~~~~~~h~~--------~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~ 428 (485)
||++++.++.+++.|... |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|||+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999999999999999999999999999
Q ss_pred EEEcCCCCChHHHHHHhhhccccCccc
Q 011446 429 VINFDFPKNSETYLHRVCWIQLSFSLS 455 (485)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~~ 455 (485)
||+||+|+|..+|+||+|||||.|...
T Consensus 486 VI~~d~p~s~~~~~Qr~GRArr~g~~~ 512 (699)
T 4gl2_A 486 VIRYGLVTNEIAMVQARGRARADESTY 512 (699)
T ss_dssp CEEESCCCCHHHHHHHHTTSCSSSCEE
T ss_pred EEEeCCCCCHHHHHHHcCCCCCCCceE
Confidence 999999999999999999999976443
No 33
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.7e-42 Score=360.04 Aligned_cols=311 Identities=15% Similarity=0.155 Sum_probs=240.1
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011446 137 EKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (485)
Q Consensus 137 ~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (485)
..|| .|+++|..++|.++.|+ |+.++||+|||++|.+|++..... +..++|++||++||.|.++++..++..++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4699 99999999999999998 999999999999999999854332 34799999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcC------ccccCCcceEEeecccccc-CCC----------
Q 011446 217 IQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLL-SPE---------- 278 (485)
Q Consensus 217 ~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~------~~~l~~~~~iViDEah~~~-~~~---------- 278 (485)
+++.+++||.+...... ..+++|+|+||++| .+++... ...++.+.++||||||+|+ +..
T Consensus 153 l~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 99999999987654333 34689999999999 4444332 3557889999999999987 543
Q ss_pred -----CHHHHHHHHHhCC---------CCCcEE-----------------EEecccchH---HHHHH--HHhcC-CC-eE
Q 011446 279 -----FQPSVEQLIRFLP---------ANRQIL-----------------MFSATFPVT---VKDFK--DKYLQ-KP-YV 320 (485)
Q Consensus 279 -----~~~~~~~i~~~~~---------~~~~~i-----------------~~SATl~~~---~~~~~--~~~~~-~~-~~ 320 (485)
|...+..++..++ +..|++ ++|||.+.. +...+ ..++. +. ++
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 6678888888886 367777 899997642 22221 11221 11 11
Q ss_pred E------eecc------------------------------ccc------------------------------------
Q 011446 321 I------NLMD------------------------------ELT------------------------------------ 328 (485)
Q Consensus 321 ~------~~~~------------------------------~~~------------------------------------ 328 (485)
+ .+.. ...
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 1 0000 000
Q ss_pred --------cccce---EEEEeehhhhhHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHH
Q 011446 329 --------LKGIT---QYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDH 395 (485)
Q Consensus 329 --------~~~~~---~~~~~~~~~~~~~~l~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 395 (485)
.+... ..+.+.....|...+...+.. ....++||||+|++.++.|+..|...|+.+..+||++.+.+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 00000 012233456677777766654 24568999999999999999999999999999999998888
Q ss_pred HHHHHHHHhcCCccEEEEccccccCCCCC--------CCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 396 RNRVFHDFRNGACRNLVCTDLFTRGIDIQ--------AVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 396 r~~i~~~f~~g~~~vlvaT~~~~~Gidi~--------~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
+..+...|+.| .|+||||+|+||+||+ ++.+||+++.|.|...|+||+||+||.|.-|..
T Consensus 471 r~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 471 AQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp HHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred HHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 87666666655 6999999999999999 788999999999999999999999999887764
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.9e-42 Score=375.83 Aligned_cols=313 Identities=17% Similarity=0.206 Sum_probs=197.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCC--ceEEEEEcCcHHHHHHHHHHHHHHhccC
Q 011446 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKELGKHL 215 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~~~~~ 215 (485)
.++..|+++|.++++.++.++++++++|||+|||++|++|++..+..... +.++||++|+++|+.|+.+.+++++...
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 35778999999999999999999999999999999999999988876431 4589999999999999999999999888
Q ss_pred CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCcc-ccCCcceEEeeccccccCCCCHHH-HHHHHHh----
Q 011446 216 NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVC-ILKDCSMLVMDEADKLLSPEFQPS-VEQLIRF---- 289 (485)
Q Consensus 216 ~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~-~l~~~~~iViDEah~~~~~~~~~~-~~~i~~~---- 289 (485)
++.+..++|+.....+...+...++|+|+||++|.+.+..... .+.++++||+||||++.+.+.... +..++..
T Consensus 324 ~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 324 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNS 403 (936)
T ss_dssp TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTT
T ss_pred CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhcc
Confidence 9999999999876655455556789999999999998887655 688899999999999887643222 2222222
Q ss_pred CCCCCcEEEEecccch-----------HHHHHH------------------HHhcCCCeEEeeccccccc----------
Q 011446 290 LPANRQILMFSATFPV-----------TVKDFK------------------DKYLQKPYVINLMDELTLK---------- 330 (485)
Q Consensus 290 ~~~~~~~i~~SATl~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~~~---------- 330 (485)
..+..+++++|||+.. .+..+. ..+...|............
T Consensus 404 ~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l 483 (936)
T 4a2w_A 404 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483 (936)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHH
Confidence 1456889999999841 111111 1122222211110000000
Q ss_pred ---------c---------ceEEE-E------ee----------------------------------------------
Q 011446 331 ---------G---------ITQYY-A------FV---------------------------------------------- 339 (485)
Q Consensus 331 ---------~---------~~~~~-~------~~---------------------------------------------- 339 (485)
. ..... . .+
T Consensus 484 ~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~ 563 (936)
T 4a2w_A 484 MSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 563 (936)
T ss_dssp HHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 0 00000 0 00
Q ss_pred ----------------------------------------------hhhhhHHHHHHHHHh----cCCCcEEEEecChhH
Q 011446 340 ----------------------------------------------EERQKVHCLNTLFSK----LQINQSIIFCNSVNR 369 (485)
Q Consensus 340 ----------------------------------------------~~~~~~~~l~~l~~~----~~~~~~lVf~~~~~~ 369 (485)
....|...+..++.. ....++||||++++.
T Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ 643 (936)
T 4a2w_A 564 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 643 (936)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHH
Confidence 012233444455554 245699999999999
Q ss_pred HHHHHHHHHHc------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCccEEEEccccccCCCCCCCCEEEEcCCCC
Q 011446 370 VELLAKKITEL------------GYSCFYIHAKMLQDHRNRVFHDFRN-GACRNLVCTDLFTRGIDIQAVNVVINFDFPK 436 (485)
Q Consensus 370 ~~~l~~~L~~~------------~~~~~~~h~~~~~~~r~~i~~~f~~-g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~ 436 (485)
++.+++.|... |.....+||+|++.+|..+++.|++ |..+|||||+++++|||+|++++||+||+|+
T Consensus 644 ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~ 723 (936)
T 4a2w_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSG 723 (936)
T ss_dssp HHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCCS
T ss_pred HHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCC
Confidence 99999999986 5566677999999999999999999 9999999999999999999999999999999
Q ss_pred ChHHHHHHhhhcccc
Q 011446 437 NSETYLHRVCWIQLS 451 (485)
Q Consensus 437 s~~~~~Qr~GRagR~ 451 (485)
|...|+||+|| ||.
T Consensus 724 s~~~~iQr~GR-GR~ 737 (936)
T 4a2w_A 724 NVTKMIQVRGR-GRA 737 (936)
T ss_dssp CSHHHHCC-------
T ss_pred CHHHHHHhcCC-CCC
Confidence 99999999999 997
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.2e-42 Score=388.30 Aligned_cols=322 Identities=19% Similarity=0.200 Sum_probs=247.7
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHH
Q 011446 126 FLKRELLMGIFEKGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT 204 (485)
Q Consensus 126 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (485)
.|.+...++++..+|..|+|+|.++++.++.+ .+++++||||||||++|.+|++..+.+.+. .++||++|+++|+.|+
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~-~kavyi~P~raLa~q~ 988 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-GRCVYITPMEALAEQV 988 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT-CCEEEECSCHHHHHHH
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC-CEEEEEcChHHHHHHH
Confidence 46677889999889999999999999999865 679999999999999999999999876543 4899999999999999
Q ss_pred HHHHHH-HhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC--ccccCCcceEEeeccccccCCCCHH
Q 011446 205 SQVCKE-LGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEADKLLSPEFQP 281 (485)
Q Consensus 205 ~~~~~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~--~~~l~~~~~iViDEah~~~~~~~~~ 281 (485)
++.+.+ +....+++|..++|+...... ....++|+|||||++..++.++ ...++++++||+||+|++.+ ..+.
T Consensus 989 ~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~ 1064 (1724)
T 4f92_B 989 YMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGP 1064 (1724)
T ss_dssp HHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHH
T ss_pred HHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCc
Confidence 988765 556688999999998664432 2245799999999998877664 33478999999999998865 4666
Q ss_pred HHHHHHH-------hCCCCCcEEEEecccchHHHHHHHHhcCCC-eEEeeccccccccceEEEEeehhhhh-------HH
Q 011446 282 SVEQLIR-------FLPANRQILMFSATFPVTVKDFKDKYLQKP-YVINLMDELTLKGITQYYAFVEERQK-------VH 346 (485)
Q Consensus 282 ~~~~i~~-------~~~~~~~~i~~SATl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 346 (485)
.+..++. ..+.+.|+|+||||++ +..++...+...+ ....+.....+..+..++........ ..
T Consensus 1065 ~le~il~rl~~i~~~~~~~~riI~lSATl~-N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~ 1143 (1724)
T 4f92_B 1065 VLEVICSRMRYISSQIERPIRIVALSSSLS-NAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAK 1143 (1724)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEEESCBT-THHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHH
T ss_pred cHHHHHHHHHHHHhhcCCCceEEEEeCCCC-CHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcc
Confidence 6665544 3467899999999997 4566665543332 23333333333333333332222111 11
Q ss_pred HH-HHHHHhcCCCcEEEEecChhHHHHHHHHHHHc----------------------------------CCeEEEEcCCC
Q 011446 347 CL-NTLFSKLQINQSIIFCNSVNRVELLAKKITEL----------------------------------GYSCFYIHAKM 391 (485)
Q Consensus 347 ~l-~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------------------------------~~~~~~~h~~~ 391 (485)
.+ ..+......+++||||++++.|+.++..|... ...+.++|++|
T Consensus 1144 ~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL 1223 (1724)
T 4f92_B 1144 PVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGL 1223 (1724)
T ss_dssp HHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTS
T ss_pred hHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCC
Confidence 12 22333446679999999999999988777431 24588999999
Q ss_pred CHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE----------cCCCCChHHHHHHhhhccccCc
Q 011446 392 LQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----------FDFPKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 392 ~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----------~~~p~s~~~~~Qr~GRagR~g~ 453 (485)
++.+|..+++.|++|.++|||||+.+++|||+|++.+||. ...|.+..+|.||+|||||.|.
T Consensus 1224 ~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~ 1295 (1724)
T 4f92_B 1224 SPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQ 1295 (1724)
T ss_dssp CHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTT
T ss_pred CHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCC
Confidence 9999999999999999999999999999999999999883 2346789999999999999875
No 36
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.4e-40 Score=344.68 Aligned_cols=309 Identities=17% Similarity=0.177 Sum_probs=217.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
|. .|+++|..+++.++.|+ |+.++||+|||++|.+|++..... +..++|++||++||.|+++++..++..++++
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~ 145 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGLT 145 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCe
Confidence 54 89999999999999998 999999999999999999865443 3478999999999999999999999999999
Q ss_pred EEEEECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcC------ccccCCcceEEeecccccc-CC-------------
Q 011446 219 VMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLL-SP------------- 277 (485)
Q Consensus 219 v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~------~~~l~~~~~iViDEah~~~-~~------------- 277 (485)
+.+++||.+... .....+++|+|+||++| .+++... ...++++.++|+||||+|+ +.
T Consensus 146 v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~ 223 (853)
T 2fsf_A 146 VGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAED 223 (853)
T ss_dssp EEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC---
T ss_pred EEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCcc
Confidence 999999987643 33334689999999999 6666543 2557899999999999988 43
Q ss_pred --CCHHHHHHHHHhCCC--------------------CCcEE------------------------EEecccchHHHHH-
Q 011446 278 --EFQPSVEQLIRFLPA--------------------NRQIL------------------------MFSATFPVTVKDF- 310 (485)
Q Consensus 278 --~~~~~~~~i~~~~~~--------------------~~~~i------------------------~~SATl~~~~~~~- 310 (485)
+|...+..++..++. ..|++ ++|||.+.....+
T Consensus 224 ~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~ 303 (853)
T 2fsf_A 224 SSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVT 303 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHH
Confidence 355667777777754 34543 8899865321111
Q ss_pred --H--HHhc--------CCCeE-----------------------------Eeecc-ccccccce---------------
Q 011446 311 --K--DKYL--------QKPYV-----------------------------INLMD-ELTLKGIT--------------- 333 (485)
Q Consensus 311 --~--~~~~--------~~~~~-----------------------------~~~~~-~~~~~~~~--------------- 333 (485)
+ ..++ .++.+ +.+.. ..+...+.
T Consensus 304 ~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmT 383 (853)
T 2fsf_A 304 AALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMT 383 (853)
T ss_dssp -----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCC
Confidence 0 0000 00000 00000 00000010
Q ss_pred --------------------------------EEEEeehhhhhHHHHHHHHHh--cCCCcEEEEecChhHHHHHHHHHHH
Q 011446 334 --------------------------------QYYAFVEERQKVHCLNTLFSK--LQINQSIIFCNSVNRVELLAKKITE 379 (485)
Q Consensus 334 --------------------------------~~~~~~~~~~~~~~l~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~ 379 (485)
..+.+.....|...+...+.. ....++||||+|++.++.|+..|.+
T Consensus 384 GTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~ 463 (853)
T 2fsf_A 384 GTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTK 463 (853)
T ss_dssp CTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHH
Confidence 012334566777777777654 2456899999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCC---------------------------------
Q 011446 380 LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAV--------------------------------- 426 (485)
Q Consensus 380 ~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v--------------------------------- 426 (485)
.|+.+..+||++...++..+.+.|+.| .|+||||+|+||+||+..
T Consensus 464 ~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 541 (853)
T 2fsf_A 464 AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVL 541 (853)
T ss_dssp TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHH
Confidence 999999999999888888888888888 699999999999999974
Q ss_pred ----CEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 427 ----NVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 427 ----~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
.|||+++.|.|...|.||+||+||.|.-|..
T Consensus 542 ~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 542 EAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp HTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred hcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 5999999999999999999999999988775
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.7e-41 Score=355.46 Aligned_cols=309 Identities=17% Similarity=0.192 Sum_probs=228.5
Q ss_pred HHHHH-HHHcCCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHH
Q 011446 130 ELLMG-IFEKGFERPSPIQEESIPIALTG------SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELAL 202 (485)
Q Consensus 130 ~l~~~-l~~~~~~~~~~~Q~~~i~~i~~~------~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~ 202 (485)
.+.+. +...+| .|+++|.++++.++.+ .+++++|+||||||++|++|++..+..+ .+++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHH
Confidence 34444 466789 8999999999999875 5899999999999999999999887643 48999999999999
Q ss_pred HHHHHHHHHhccCCceEEEEECCCChHHHH---HHhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC
Q 011446 203 QTSQVCKELGKHLNIQVMVTTGGTSLKDDI---MRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (485)
Q Consensus 203 q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (485)
|+++.+.+++...++++..++|+....+.. ..+. ..++|+|+||+.+.+ ...+.++++||+||+|++....
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 999999999988899999999998766532 2222 358999999998754 3457899999999999863211
Q ss_pred CHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeecccc-ccccceEEEEeehhhhhHHHHHHHHHhc-C
Q 011446 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDEL-TLKGITQYYAFVEERQKVHCLNTLFSKL-Q 356 (485)
Q Consensus 279 ~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~ 356 (485)
...+.....+.++++||||+.+...... +..+.....+.... ....+. ............+..+.... .
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~--~~~~~~~~~~~l~~~i~~~l~~ 577 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQ--TMLVPMDRVNEVYEFVRQEVMR 577 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCE--ECCCCSSTHHHHHHHHHHHTTT
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceE--EEEeccchHHHHHHHHHHHHhc
Confidence 1122223356899999999865544333 22222222221111 111221 11222222233333333333 3
Q ss_pred CCcEEEEecChh--------HHHHHHHHHHH---cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 011446 357 INQSIIFCNSVN--------RVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA 425 (485)
Q Consensus 357 ~~~~lVf~~~~~--------~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~ 425 (485)
.++++|||++.+ .++.+++.|.+ .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 578 g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~ 657 (780)
T 1gm5_A 578 GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPR 657 (780)
T ss_dssp SCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTT
T ss_pred CCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCC
Confidence 458999999764 47788888877 3678999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCC-ChHHHHHHhhhccccCcccc
Q 011446 426 VNVVINFDFPK-NSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 426 v~~VI~~~~p~-s~~~~~Qr~GRagR~g~~~~ 456 (485)
+++||+++.|. +.+.|.||+||+||.|+-+.
T Consensus 658 v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~ 689 (780)
T 1gm5_A 658 ANVMVIENPERFGLAQLHQLRGRVGRGGQEAY 689 (780)
T ss_dssp CCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCE
T ss_pred CCEEEEeCCCCCCHHHHHHHhcccCcCCCCCE
Confidence 99999999996 78899999999999876543
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.6e-40 Score=376.04 Aligned_cols=309 Identities=20% Similarity=0.273 Sum_probs=236.8
Q ss_pred CCCCCcHHHHHHHHHHhc-CCCEEEEccCCCchhHHhHHHHHhhhhcc--------CCceEEEEEcCcHHHHHHHHHHHH
Q 011446 139 GFERPSPIQEESIPIALT-GSDILARAKNGTGKTAAFCIPALEKIDQD--------NNVIQVVILVPTRELALQTSQVCK 209 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~-~~~~ii~~~TGsGKT~~~~~~~l~~l~~~--------~~~~~~lil~P~~~la~q~~~~~~ 209 (485)
||..|+++|++++|.++. +++++++||||||||++|.++++..+.+. ..+.++||++|+++|+.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999998875 67899999999999999999999988642 235689999999999999999999
Q ss_pred HHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCc--cccCCcceEEeeccccccCCCCHHHHHHHH
Q 011446 210 ELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV--CILKDCSMLVMDEADKLLSPEFQPSVEQLI 287 (485)
Q Consensus 210 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~--~~l~~~~~iViDEah~~~~~~~~~~~~~i~ 287 (485)
+.+...|++|..++|+...... ....++|+|||||++..++.++. ..++++++||+||+|.+.+ +.+..++.++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9999999999999998875432 12468999999999877766542 3478899999999997654 6777776655
Q ss_pred H-------hCCCCCcEEEEecccchHHHHHHHHhcCCC--eEEeeccccccccceEEEEeehhhh---hHHHH----HHH
Q 011446 288 R-------FLPANRQILMFSATFPVTVKDFKDKYLQKP--YVINLMDELTLKGITQYYAFVEERQ---KVHCL----NTL 351 (485)
Q Consensus 288 ~-------~~~~~~~~i~~SATl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l----~~l 351 (485)
. ..+.+.|+|+||||+|+ ..+++..+...+ ....+.....+..+.+.+....... ....+ ...
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 4 34678999999999984 555555433222 1222233332223333333222211 11122 222
Q ss_pred H-HhcCCCcEEEEecChhHHHHHHHHHHHc-------------------------------------CCeEEEEcCCCCH
Q 011446 352 F-SKLQINQSIIFCNSVNRVELLAKKITEL-------------------------------------GYSCFYIHAKMLQ 393 (485)
Q Consensus 352 ~-~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~ 393 (485)
+ .....+++||||++++.|+.++..|.+. ...+.++||+|++
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 2 2234568999999999999998888641 2458899999999
Q ss_pred HHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE----cC------CCCChHHHHHHhhhccccC
Q 011446 394 DHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----FD------FPKNSETYLHRVCWIQLSF 452 (485)
Q Consensus 394 ~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----~~------~p~s~~~~~Qr~GRagR~g 452 (485)
++|..+++.|++|.++|||||+.++.|||+|++++||. |+ .|.+..+|.||+|||||.|
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g 459 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQ 459 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTT
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCC
Confidence 99999999999999999999999999999999999985 33 3568999999999999965
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.2e-39 Score=358.94 Aligned_cols=315 Identities=21% Similarity=0.243 Sum_probs=245.1
Q ss_pred cCCCHHHHHHHHHc-CCCCCcHHHHHHHHHHhc----CC--CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 125 YFLKRELLMGIFEK-GFERPSPIQEESIPIALT----GS--DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 125 ~~l~~~l~~~l~~~-~~~~~~~~Q~~~i~~i~~----~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
+.++..+.+.+.+. +| .++|+|.++++.++. ++ +++++++||+|||++|+.+++..+.. +.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEech
Confidence 34666677776544 66 479999999999987 55 89999999999999999888876653 3499999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHH---HHhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeecccc
Q 011446 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI---MRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK 273 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~ 273 (485)
++|+.|+++.+.+++...++++..+++.....+.. ..+. ..++|+|+||+.+.. ...+.++++||+||||+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~-----~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS-----DVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS-----CCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC-----CccccccceEEEechHh
Confidence 99999999999998888888898888876655432 2232 358999999986632 34578999999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHH
Q 011446 274 LLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFS 353 (485)
Q Consensus 274 ~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 353 (485)
|.......+..++.+.++++||||+.+....+....+.++..+... ......+..++..... ......++.
T Consensus 737 -----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~-~~~r~~i~~~~~~~~~---~~i~~~il~ 807 (1151)
T 2eyq_A 737 -----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP-PARRLAVKTFVREYDS---MVVREAILR 807 (1151)
T ss_dssp -----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC-CCBCBCEEEEEEECCH---HHHHHHHHH
T ss_pred -----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC-CCCccccEEEEecCCH---HHHHHHHHH
Confidence 4445666777777889999999998777666655555443322211 1111223333322222 222333333
Q ss_pred hc-CCCcEEEEecChhHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEE
Q 011446 354 KL-QINQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 430 (485)
Q Consensus 354 ~~-~~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI 430 (485)
.. ..++++|||++++.++.+++.|.+. +..+..+||+|++.+|+.+++.|.+|+.+|||||+++++|+|+|++++||
T Consensus 808 ~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VI 887 (1151)
T 2eyq_A 808 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 887 (1151)
T ss_dssp HHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE
T ss_pred HHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEE
Confidence 33 4579999999999999999999988 78999999999999999999999999999999999999999999999999
Q ss_pred EcCC-CCChHHHHHHhhhccccCccccc
Q 011446 431 NFDF-PKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 431 ~~~~-p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
.++. +.+..+|.||+||+||.|+.+..
T Consensus 888 i~~~~~~~l~~l~Qr~GRvgR~g~~g~~ 915 (1151)
T 2eyq_A 888 IERADHFGLAQLHQLRGRVGRSHHQAYA 915 (1151)
T ss_dssp ETTTTSSCHHHHHHHHTTCCBTTBCEEE
T ss_pred EeCCCCCCHHHHHHHHhccCcCCCceEE
Confidence 9988 46899999999999998865543
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=7.4e-41 Score=345.47 Aligned_cols=301 Identities=15% Similarity=0.148 Sum_probs=229.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+++|.++++.++.++++++++|||+|||++|+.+++..+... +.++||++|+++|+.|+.+.+.++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 79999999999999999999999999999999999888877532 2389999999999999999998886666678888
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
++|+.....+ .....+|+|+||+.+.. .....+.++++||+||||++.. ..+..++..+....++++|||
T Consensus 191 ~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 191 IGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp CGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEES
T ss_pred EecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEe
Confidence 8888766543 45678999999997644 2334577899999999999754 567778888888889999999
Q ss_pred ccchHHHHHHH-HhcCCCeEEeeccc-------cccccceEEEEee---------------------hhhhhHHHHHHHH
Q 011446 302 TFPVTVKDFKD-KYLQKPYVINLMDE-------LTLKGITQYYAFV---------------------EERQKVHCLNTLF 352 (485)
Q Consensus 302 Tl~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------------------~~~~~~~~l~~l~ 352 (485)
|++........ ..+..+........ ............. ....+...+..++
T Consensus 261 Tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 340 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLA 340 (510)
T ss_dssp CGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHH
Confidence 99755322211 11112222111110 0000000000000 0112233344444
Q ss_pred Hhc---CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEc-cccccCCCCCCCCE
Q 011446 353 SKL---QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT-DLFTRGIDIQAVNV 428 (485)
Q Consensus 353 ~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT-~~~~~Gidi~~v~~ 428 (485)
... ...++||||+ .+.++.+++.|.+.+..+..+||+++..+|..+++.|.+|+.+||||| +++++|+|+|++++
T Consensus 341 ~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~ 419 (510)
T 2oca_A 341 IKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHH 419 (510)
T ss_dssp HHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEE
T ss_pred HHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcE
Confidence 443 3345666666 899999999999988899999999999999999999999999999999 99999999999999
Q ss_pred EEEcCCCCChHHHHHHhhhccccCccc
Q 011446 429 VINFDFPKNSETYLHRVCWIQLSFSLS 455 (485)
Q Consensus 429 VI~~~~p~s~~~~~Qr~GRagR~g~~~ 455 (485)
||+++.|.|...|+||+||+||.|.-+
T Consensus 420 vi~~~~~~s~~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 420 VVLAHGVKSKIIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp EEESSCCCSCCHHHHHHHHHHTTTCCC
T ss_pred EEEeCCCCCHHHHHHHHhcccccCCCC
Confidence 999999999999999999999987754
No 41
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.6e-40 Score=351.63 Aligned_cols=321 Identities=17% Similarity=0.193 Sum_probs=234.2
Q ss_pred CCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 117 TKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG-SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
.+...|.++++++.+.+.+...+ ..|.+.|+++|+.++.+ ++++++||||||||++..+.++......+.+.+++|++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 34457999999999999999888 68889999999877754 67999999999999943322222222222245799999
Q ss_pred CcHHHHHHHHHHHHHH-hccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeecccc-
Q 011446 196 PTRELALQTSQVCKEL-GKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADK- 273 (485)
Q Consensus 196 P~~~la~q~~~~~~~~-~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~- 273 (485)
|+++|+.|+++.+.+. ....+..++....... ......+|+|+|||++.+.+... ..+.++++|||||+|.
T Consensus 148 P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R 220 (773)
T 2xau_A 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHER 220 (773)
T ss_dssp SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGC
T ss_pred chHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcccc
Confidence 9999999988755433 2233333332221111 11246789999999999877664 4488999999999994
Q ss_pred ccCCCCH-HHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhh----HHHH
Q 011446 274 LLSPEFQ-PSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQK----VHCL 348 (485)
Q Consensus 274 ~~~~~~~-~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l 348 (485)
.++.++. ..+..+. ...++.++|+||||++. ..+. .++..+.++.+.... ..+..++........ ...+
T Consensus 221 ~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr~--~pv~~~~~~~~~~~~~~~~l~~l 294 (773)
T 2xau_A 221 TLATDILMGLLKQVV-KRRPDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGRT--YPVELYYTPEFQRDYLDSAIRTV 294 (773)
T ss_dssp CHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCCC--CCEEEECCSSCCSCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHH-HhCCCceEEEEeccccH--HHHH-HHhcCCCcccccCcc--cceEEEEecCCchhHHHHHHHHH
Confidence 5553333 2333333 33468899999999964 3444 445544444333221 123333333222222 2334
Q ss_pred HHHHHhcCCCcEEEEecChhHHHHHHHHHHH-----------cCCeEEEEcCCCCHHHHHHHHHHHh-----cCCccEEE
Q 011446 349 NTLFSKLQINQSIIFCNSVNRVELLAKKITE-----------LGYSCFYIHAKMLQDHRNRVFHDFR-----NGACRNLV 412 (485)
Q Consensus 349 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-----------~~~~~~~~h~~~~~~~r~~i~~~f~-----~g~~~vlv 412 (485)
..++.....+++||||+++++++.+++.|.+ .++.+.++||+|++++|..+++.|+ +|.++|||
T Consensus 295 ~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlV 374 (773)
T 2xau_A 295 LQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVI 374 (773)
T ss_dssp HHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEE
T ss_pred HHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEE
Confidence 4444455678999999999999999999985 4778999999999999999999999 99999999
Q ss_pred EccccccCCCCCCCCEEEEcCC------------------CCChHHHHHHhhhcccc
Q 011446 413 CTDLFTRGIDIQAVNVVINFDF------------------PKNSETYLHRVCWIQLS 451 (485)
Q Consensus 413 aT~~~~~Gidi~~v~~VI~~~~------------------p~s~~~~~Qr~GRagR~ 451 (485)
||+++++|||||++++||++|+ |.|.++|+||+|||||.
T Consensus 375 AT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 375 STNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp ECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred eCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 9999999999999999999988 88999999999999997
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=5.1e-39 Score=333.28 Aligned_cols=310 Identities=18% Similarity=0.166 Sum_probs=241.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.|+ .|+++|..+++.++.|+ |+.++||+|||++|.+|++..... +..++|++||++||.|.++++..+...+++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~lGL 181 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFLGL 181 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 588 99999999999999988 999999999999999999754443 237999999999999999999999999999
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcC------ccccCCcceEEeeccccccCC-------------
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKG------VCILKDCSMLVMDEADKLLSP------------- 277 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~------~~~l~~~~~iViDEah~~~~~------------- 277 (485)
++.+++|+.+.... .....++|+|+||++| .+++... ...++.+.++||||||+|+.+
T Consensus 182 sv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 182 QVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp CEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred eEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 99999999875433 3334689999999999 5655543 355788999999999998832
Q ss_pred ---CCHHHHHHHHHhCC---------CCCcEE-----------------EEecccch---HHHHHHH--HhcC-C-----
Q 011446 278 ---EFQPSVEQLIRFLP---------ANRQIL-----------------MFSATFPV---TVKDFKD--KYLQ-K----- 317 (485)
Q Consensus 278 ---~~~~~~~~i~~~~~---------~~~~~i-----------------~~SATl~~---~~~~~~~--~~~~-~----- 317 (485)
+|...+..++..++ +..|++ ++|||.+. .+...+. .++. +
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 47788999999997 678888 88999764 2222211 1111 1
Q ss_pred --CeEEeecc------------------------------ccccccce--------------------------------
Q 011446 318 --PYVINLMD------------------------------ELTLKGIT-------------------------------- 333 (485)
Q Consensus 318 --~~~~~~~~------------------------------~~~~~~~~-------------------------------- 333 (485)
+.++.+.. ..+...+.
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 419 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG 419 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC
Confidence 11111110 00000000
Q ss_pred ---------------EEEEeehhhhhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHH
Q 011446 334 ---------------QYYAFVEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHR 396 (485)
Q Consensus 334 ---------------~~~~~~~~~~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r 396 (485)
..+.+.....|...+...+... ...++||||+|++.++.|+..|.+.|+.+..+||++...++
T Consensus 420 vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa 499 (922)
T 1nkt_A 420 VVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEA 499 (922)
T ss_dssp EEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHH
T ss_pred eEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHH
Confidence 0123345566777777666442 45689999999999999999999999999999999887777
Q ss_pred HHHHHHHhcCCccEEEEccccccCCCCCCC--------------------------------------------------
Q 011446 397 NRVFHDFRNGACRNLVCTDLFTRGIDIQAV-------------------------------------------------- 426 (485)
Q Consensus 397 ~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v-------------------------------------------------- 426 (485)
..+...|+.| .|+||||+|+||+||+.+
T Consensus 500 ~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 577 (922)
T 1nkt_A 500 TIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEA 577 (922)
T ss_dssp HHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 7777888877 699999999999999975
Q ss_pred --CEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 427 --NVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 427 --~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
.|||+++.|.|...|.||+||+||.|.-|..
T Consensus 578 GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s 610 (922)
T 1nkt_A 578 GGLYVLGTERHESRRIDNQLRGRSGRQGDPGES 610 (922)
T ss_dssp TSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEE
T ss_pred CCcEEEeccCCCCHHHHHHHhcccccCCCCeeE
Confidence 4999999999999999999999999887765
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5.1e-41 Score=339.75 Aligned_cols=277 Identities=15% Similarity=0.148 Sum_probs=206.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCCE-EEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 139 GFERPSPIQEESIPIALTGSDI-LARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~-ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
|+.+++|+|+ ++|.+++++++ ++++|||||||++|++|++..+... ++++||++|+++|+.|+.+.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 6788999985 79999999886 9999999999999999998876653 3589999999999999988764 33
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHH-HhCCCCCcE
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLI-RFLPANRQI 296 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~-~~~~~~~~~ 296 (485)
.+......... ....+..|.++|++.+.+.+.+. ..+.++++||+||||++ +..+...+..+. ....++.|+
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 33322221111 11234578999999998877664 44889999999999976 322232222222 223567999
Q ss_pred EEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHH
Q 011446 297 LMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKK 376 (485)
Q Consensus 297 i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~ 376 (485)
++||||++.....+ +...+..+......+... + ... ...+.. ..+++||||++++.++.+++.
T Consensus 145 i~~SAT~~~~~~~~---~~~~~~~~~~~~~~p~~~---~------~~~----~~~l~~-~~~~~lVF~~s~~~a~~l~~~ 207 (451)
T 2jlq_A 145 IFMTATPPGSTDPF---PQSNSPIEDIEREIPERS---W------NTG----FDWITD-YQGKTVWFVPSIKAGNDIANC 207 (451)
T ss_dssp EEECSSCTTCCCSS---CCCSSCEEEEECCCCSSC---C------SSS----CHHHHH-CCSCEEEECSSHHHHHHHHHH
T ss_pred EEEccCCCccchhh---hcCCCceEecCccCCchh---h------HHH----HHHHHh-CCCCEEEEcCCHHHHHHHHHH
Confidence 99999998644322 223333333221111110 0 001 112222 356999999999999999999
Q ss_pred HHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcC--------------------CCC
Q 011446 377 ITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFD--------------------FPK 436 (485)
Q Consensus 377 L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~--------------------~p~ 436 (485)
|...++.+..+|+++. ..+++.|++|+.+|||||+++++|+|+|+ ++||++| .|.
T Consensus 208 L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~ 282 (451)
T 2jlq_A 208 LRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPV 282 (451)
T ss_dssp HHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred HHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccC
Confidence 9999999999999854 57899999999999999999999999999 9999999 999
Q ss_pred ChHHHHHHhhhccccCc
Q 011446 437 NSETYLHRVCWIQLSFS 453 (485)
Q Consensus 437 s~~~~~Qr~GRagR~g~ 453 (485)
|.++|+||+|||||.|.
T Consensus 283 s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 283 TPASAAQRRGRIGRNPA 299 (451)
T ss_dssp CHHHHHHHHTTSSCCTT
T ss_pred CHHHHHHhccccCCCCC
Confidence 99999999999999986
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.9e-40 Score=336.80 Aligned_cols=281 Identities=20% Similarity=0.210 Sum_probs=218.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce-EE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ-VM 220 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~-v~ 220 (485)
.|+++|.++++.++.++++++++|||+|||++|+.++... +.++||+||+++|+.|+.+.+.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 6999999999999999999999999999999999888764 348999999999999998887773 677 88
Q ss_pred EEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 221 VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
.++|+.. ...+|+|+||+.+...... ...++++||+||||++.+..+.. ++..+ ...+++++|
T Consensus 163 ~~~g~~~---------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLT 225 (472)
T ss_dssp EBSSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEE
T ss_pred EECCCcC---------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEe
Confidence 8877764 2478999999998776542 12468999999999998877653 44444 467899999
Q ss_pred cccch-------------------HHHHHHHHhcCCCeEEeecccccc---------------------------ccceE
Q 011446 301 ATFPV-------------------TVKDFKDKYLQKPYVINLMDELTL---------------------------KGITQ 334 (485)
Q Consensus 301 ATl~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~ 334 (485)
||+.. ...++...++..+....+...... ..+..
T Consensus 226 ATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 305 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNK 305 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTT
T ss_pred cCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHH
Confidence 99862 223332223333222111100000 00000
Q ss_pred EEE---------------------eehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCH
Q 011446 335 YYA---------------------FVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQ 393 (485)
Q Consensus 335 ~~~---------------------~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~ 393 (485)
++. ......|...+..++......++||||++.+.++.+++.| .+..+||+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l-----~~~~~~g~~~~ 380 (472)
T 2fwr_A 306 IVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSR 380 (472)
T ss_dssp TTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCS
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh-----CcceeeCCCCH
Confidence 000 0112345677788888877789999999999999999987 36679999999
Q ss_pred HHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcc
Q 011446 394 DHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSL 454 (485)
Q Consensus 394 ~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~ 454 (485)
.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+|...|.||+||+||.|..
T Consensus 381 ~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 441 (472)
T ss_dssp HHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred HHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999854
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.3e-41 Score=349.55 Aligned_cols=291 Identities=13% Similarity=0.117 Sum_probs=213.8
Q ss_pred cCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHH
Q 011446 125 YFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQT 204 (485)
Q Consensus 125 ~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~ 204 (485)
+++++.+.+.+... ...++|+|+.+++.+++++++++++|||||||++|++|++..+.. .+.++||++||++||.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHH
Confidence 33555544444432 467889988889999999999999999999999999999988765 345899999999999999
Q ss_pred HHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHH
Q 011446 205 SQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVE 284 (485)
Q Consensus 205 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (485)
.+.+. +..+.. .+... . .....+..+.++|.+.+...+... ..+.++++|||||||++ +.+|...+.
T Consensus 232 ~~~l~------~~~v~~-~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALR------GLPIRY-QTPAV-K---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTT------TSCEEE-CCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhc------CCceeE-ecccc-e---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 87765 233332 22110 0 011234467788888887766554 34889999999999997 556777777
Q ss_pred HHHHhCC-CCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEE
Q 011446 285 QLIRFLP-ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIF 363 (485)
Q Consensus 285 ~i~~~~~-~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf 363 (485)
.++..++ .+.|+++||||++..+..+.. .++..+.+....+.... ...+. .+.. ..+++|||
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~~~~~------------~~ll~-~l~~-~~~~~LVF 361 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIPERSW------------NTGFD-WITD-YQGKTVWF 361 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCCSSCC------------SSSCH-HHHH-CCSCEEEE
T ss_pred HHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCCHHHH------------HHHHH-HHHh-CCCCEEEE
Confidence 7776664 689999999999866443222 23333333222111100 01122 2222 35799999
Q ss_pred ecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEE--------------
Q 011446 364 CNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVV-------------- 429 (485)
Q Consensus 364 ~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~V-------------- 429 (485)
|++++.|+.+++.|...++.+..+||. +|.++++.|++|+.+|||||+++++|||+| +++|
T Consensus 362 ~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~ 436 (618)
T 2whx_A 362 VPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTD 436 (618)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECS
T ss_pred ECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceeccc
Confidence 999999999999999999999999985 688899999999999999999999999997 9998
Q ss_pred ------EEcCCCCChHHHHHHhhhccccCc
Q 011446 430 ------INFDFPKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 430 ------I~~~~p~s~~~~~Qr~GRagR~g~ 453 (485)
|+++.|.|.++|+||+||+||.|.
T Consensus 437 ~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~ 466 (618)
T 2whx_A 437 GPERVILAGPIPVTPASAAQRRGRIGRNPA 466 (618)
T ss_dssp SSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCCceEEcccccCCHHHHHHhccccCCCCC
Confidence 667779999999999999999963
No 46
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.7e-39 Score=332.60 Aligned_cols=268 Identities=16% Similarity=0.188 Sum_probs=204.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.++++|.++++.+..+++++++||||||||++|.+|+++. +.+++|++|+++||.|+++.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 4566777777788888999999999999999999988863 3489999999999999988665543 455666
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCc--EEEE
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQ--ILMF 299 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~--~i~~ 299 (485)
.+|+.. .....+|+|+||++|+ ......++++++|||||||+ ++.+|...+..++..++...+ +++|
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 777654 3467899999999983 44566688899999999975 466788888889988887666 7888
Q ss_pred ecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHH
Q 011446 300 SATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE 379 (485)
Q Consensus 300 SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~ 379 (485)
|||++..+. ...+....+.... .... ........ +.....+++||||++++.++.+++.|.+
T Consensus 357 SAT~~~~i~------~~~p~i~~v~~~~--~~~i---~~~~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~ 418 (666)
T 3o8b_A 357 TATPPGSVT------VPHPNIEEVALSN--TGEI---PFYGKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSG 418 (666)
T ss_dssp ESSCTTCCC------CCCTTEEEEECBS--CSSE---EETTEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCCcccc------cCCcceEEEeecc--cchh---HHHHhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHh
Confidence 999986321 1222222211111 0110 01111100 1233567999999999999999999999
Q ss_pred cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEE----------EcC-----------CCCCh
Q 011446 380 LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI----------NFD-----------FPKNS 438 (485)
Q Consensus 380 ~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI----------~~~-----------~p~s~ 438 (485)
.++.+..+||+|++++ |.++..+|||||+++++|||++ +++|| ||| .|.|.
T Consensus 419 ~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~ 490 (666)
T 3o8b_A 419 LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDA 490 (666)
T ss_dssp TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBH
T ss_pred CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCH
Confidence 9999999999999874 4567779999999999999997 99999 566 89999
Q ss_pred HHHHHHhhhccccCcccc
Q 011446 439 ETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 439 ~~~~Qr~GRagR~g~~~~ 456 (485)
++|+||+||+|| |+-|.
T Consensus 491 ~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 491 VSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp HHHHHHHTTBCS-SSCEE
T ss_pred HHHHHHhccCCC-CCCCE
Confidence 999999999999 66543
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1e-39 Score=328.77 Aligned_cols=254 Identities=16% Similarity=0.204 Sum_probs=174.3
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHH
Q 011446 153 IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI 232 (485)
Q Consensus 153 ~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 232 (485)
++++++++++++|||||||++|++|++..+... +.+++|++||++||.|+++.+..+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~----- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS----- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce-----
Confidence 456789999999999999999999999877653 358999999999999999877633 2322111110
Q ss_pred HHhcCCCeEEEEcchHHHHhhhc--------CccccCCcceEEeeccccccCCCCHHHHHHHHHhC-CCCCcEEEEeccc
Q 011446 233 MRLYQPVHLLVGTPGRILDLSKK--------GVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFL-PANRQILMFSATF 303 (485)
Q Consensus 233 ~~~~~~~~Ili~Tp~~l~~~~~~--------~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~-~~~~~~i~~SATl 303 (485)
.++||+++..++.. ....+.++++||+||||++ +.++...+..+.... +.+.|+++||||+
T Consensus 71 ---------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 140 (440)
T 1yks_A 71 ---------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATP 140 (440)
T ss_dssp ---------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred ---------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCC
Confidence 25566544332221 1234789999999999997 333333333332222 3679999999999
Q ss_pred chHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCe
Q 011446 304 PVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYS 383 (485)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~ 383 (485)
++.+..+... ......+.. .+........+..+.+ ..+++||||++++.++.+++.|...++.
T Consensus 141 ~~~~~~~~~~---~~~~~~~~~------------~~~~~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~ 203 (440)
T 1yks_A 141 PGTSDEFPHS---NGEIEDVQT------------DIPSEPWNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKS 203 (440)
T ss_dssp TTCCCSSCCC---SSCEEEEEC------------CCCSSCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred Cchhhhhhhc---CCCeeEeee------------ccChHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 7654322211 111111110 1111111111222222 2579999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE-------------------cCCCCChHHHHHH
Q 011446 384 CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN-------------------FDFPKNSETYLHR 444 (485)
Q Consensus 384 ~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~-------------------~~~p~s~~~~~Qr 444 (485)
+..+|| ++|..+++.|++|+.+|||||+++++|||+| +++||+ ++.|.+.++|+||
T Consensus 204 v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr 278 (440)
T 1yks_A 204 VVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQR 278 (440)
T ss_dssp EEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHH
T ss_pred EEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHh
Confidence 999999 3688999999999999999999999999999 999997 8889999999999
Q ss_pred hhhcccc
Q 011446 445 VCWIQLS 451 (485)
Q Consensus 445 ~GRagR~ 451 (485)
+||+||.
T Consensus 279 ~GR~GR~ 285 (440)
T 1yks_A 279 RGRIGRN 285 (440)
T ss_dssp HTTSSCC
T ss_pred ccccCCC
Confidence 9999997
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.3e-39 Score=341.19 Aligned_cols=284 Identities=18% Similarity=0.213 Sum_probs=198.6
Q ss_pred HHHHcCCC-----CCcHHHH-----HHHHHHh------cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 134 GIFEKGFE-----RPSPIQE-----ESIPIAL------TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 134 ~l~~~~~~-----~~~~~Q~-----~~i~~i~------~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
.+..+||. .|+++|+ ++|+.++ .++++++++|||||||++|++|++..+... +.++||++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 44555666 8999999 9999888 899999999999999999999999886653 3589999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC
Q 011446 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (485)
++||.|+++.+..+ ++. ...+.. . .....+.-+-+++.+.+.+.+... ..+.++++|||||||++ +.
T Consensus 280 r~La~Q~~~~l~~~----~i~--~~~~~l--~---~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~ 346 (673)
T 2wv9_A 280 RVVAAEMAEALRGL----PVR--YLTPAV--Q---REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DP 346 (673)
T ss_dssp HHHHHHHHHHTTTS----CCE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CH
T ss_pred HHHHHHHHHHHhcC----Cee--eecccc--c---ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-Cc
Confidence 99999998877643 221 111100 0 000112234455555555444432 45889999999999997 22
Q ss_pred CCHHHHHHHHHhC-CCCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcC
Q 011446 278 EFQPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQ 356 (485)
Q Consensus 278 ~~~~~~~~i~~~~-~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 356 (485)
.+...+..+...+ +.+.++++||||++..+..+... ...+..+.... ........+..+.. .
T Consensus 347 ~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~~~------------~~~~~~~~l~~l~~--~ 409 (673)
T 2wv9_A 347 ASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSSEI------------PDRAWSSGFEWITD--Y 409 (673)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEECCC------------CSSCCSSCCHHHHS--C
T ss_pred cHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEeeec------------CHHHHHHHHHHHHh--C
Confidence 2222233333333 36789999999998654322111 11111111111 11111111222222 4
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE-----
Q 011446 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN----- 431 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~----- 431 (485)
.+++||||++++.++.+++.|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++||+
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~ 484 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSV 484 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcc
Confidence 6799999999999999999999999999999994 789999999999999999999999999999 999998
Q ss_pred ---------------cCCCCChHHHHHHhhhcccc-Ccc
Q 011446 432 ---------------FDFPKNSETYLHRVCWIQLS-FSL 454 (485)
Q Consensus 432 ---------------~~~p~s~~~~~Qr~GRagR~-g~~ 454 (485)
+++|.|.++|+||+||+||. |+-
T Consensus 485 ~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~ 523 (673)
T 2wv9_A 485 KPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI 523 (673)
T ss_dssp CEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCC
T ss_pred cceeeecccccceecccCCCCHHHHHHHhhccCCCCCCC
Confidence 56899999999999999998 444
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=7.5e-39 Score=324.35 Aligned_cols=269 Identities=17% Similarity=0.178 Sum_probs=185.7
Q ss_pred HHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCC
Q 011446 148 EESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTS 227 (485)
Q Consensus 148 ~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~ 227 (485)
......+.+++++++++|||||||++|++|++..+... ++++||++|+++|+.|+.+.+. +..+....+...
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~ 83 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQ 83 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT------TSCEEECC----
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc------CceEeEEecccc
Confidence 33344566788999999999999999999999887643 3589999999999999988776 333332221111
Q ss_pred hHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHH-HhCCCCCcEEEEecccchH
Q 011446 228 LKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLI-RFLPANRQILMFSATFPVT 306 (485)
Q Consensus 228 ~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~-~~~~~~~~~i~~SATl~~~ 306 (485)
.. ...+..+.++|.+.+...+... ..+.++++|||||||++. ..+...+..+. ....++.|+++||||++..
T Consensus 84 ~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 84 RE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPGT 156 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred cC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCcc
Confidence 10 1234567789999887766654 458899999999999741 00011111111 1123688999999999865
Q ss_pred HHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEE
Q 011446 307 VKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFY 386 (485)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ 386 (485)
+..+... ..|... +....+.... .... .++.. ..+++||||++++.++.+++.|...++.+..
T Consensus 157 ~~~~~~~--~~pi~~-~~~~~~~~~~---------~~~~----~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~ 219 (459)
T 2z83_A 157 TDPFPDS--NAPIHD-LQDEIPDRAW---------SSGY----EWITE-YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQ 219 (459)
T ss_dssp CCSSCCC--SSCEEE-EECCCCSSCC---------SSCC----HHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhhccC--CCCeEE-ecccCCcchh---------HHHH----HHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCcEEe
Confidence 4322111 122211 1111110000 0111 12222 2579999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEE--------------------cCCCCChHHHHHHhh
Q 011446 387 IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN--------------------FDFPKNSETYLHRVC 446 (485)
Q Consensus 387 ~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~--------------------~~~p~s~~~~~Qr~G 446 (485)
+|+. +|..+++.|++|+.+|||||+++++|||+|+ ++||+ ++.|.|.++|+||+|
T Consensus 220 lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~G 294 (459)
T 2z83_A 220 LNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRG 294 (459)
T ss_dssp ESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHT
T ss_pred cCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhcc
Confidence 9995 6788999999999999999999999999999 99999 669999999999999
Q ss_pred hccccCc
Q 011446 447 WIQLSFS 453 (485)
Q Consensus 447 RagR~g~ 453 (485)
||||.|.
T Consensus 295 RaGR~g~ 301 (459)
T 2z83_A 295 RVGRNPN 301 (459)
T ss_dssp TSSCCTT
T ss_pred ccCCCCC
Confidence 9999985
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.1e-36 Score=279.92 Aligned_cols=208 Identities=30% Similarity=0.524 Sum_probs=192.6
Q ss_pred CCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc-----CCceEE
Q 011446 117 TKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-----NNVIQV 191 (485)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-----~~~~~~ 191 (485)
.+...|.++++++.+.+.+.+.||..|+++|.++++.++.++++++++|||||||++|++|++..+... ..++++
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 445679999999999999999999999999999999999999999999999999999999999887642 345689
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeecc
Q 011446 192 VILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEA 271 (485)
Q Consensus 192 lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEa 271 (485)
||++|+++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+|||
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 185 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 185 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTH
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCH
Confidence 99999999999999999999999999999999999988888887788999999999999999887778999999999999
Q ss_pred ccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeec
Q 011446 272 DKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (485)
Q Consensus 272 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (485)
|++++.+|...+..++..++++.|++++|||+|..+.+++..++.+|..+.+.
T Consensus 186 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 186 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp HHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999877664
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=6.1e-37 Score=307.87 Aligned_cols=260 Identities=13% Similarity=0.124 Sum_probs=185.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 236 (485)
++++++++|||||||++|++|++..+... +.+++|++||++|+.|+.+.+. +..+....|+... ...
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~ 68 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ERT 68 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cCC
Confidence 67899999999999999999999666543 3489999999999999887664 4455544443221 111
Q ss_pred CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHh-CCCCCcEEEEecccchHHHHHHHHhc
Q 011446 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRF-LPANRQILMFSATFPVTVKDFKDKYL 315 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~-~~~~~~~i~~SATl~~~~~~~~~~~~ 315 (485)
....+.++|.+.+.+.+.. ...+.++++||+||||++ +..+......+... .+.+.++++||||+++.+..+..
T Consensus 69 ~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~--- 143 (431)
T 2v6i_A 69 GNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP--- 143 (431)
T ss_dssp CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC---
T ss_pred CCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC---
Confidence 3456778899988776655 445889999999999986 32223333333332 25689999999999864321111
Q ss_pred CCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHH
Q 011446 316 QKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDH 395 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~ 395 (485)
..+.+....... ... +...+..++.. ..+++||||++++.++.+++.|.+.++.+..+||+ +
T Consensus 144 ~~~~i~~~~~~~------------~~~-~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~ 205 (431)
T 2v6i_A 144 SNSPIIDEETRI------------PDK-AWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----T 205 (431)
T ss_dssp CSSCCEEEECCC------------CSS-CCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----T
T ss_pred CCCceeeccccC------------CHH-HHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----c
Confidence 011111111110 000 00111222333 35689999999999999999999999999999997 5
Q ss_pred HHHHHHHHhcCCccEEEEccccccCCCCCCCCE-----------------EEEcCCCCChHHHHHHhhhccccCc
Q 011446 396 RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNV-----------------VINFDFPKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 396 r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~-----------------VI~~~~p~s~~~~~Qr~GRagR~g~ 453 (485)
|..+++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+.++|+||+||+||.|.
T Consensus 206 r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 206 FESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp HHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred HHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCC
Confidence 78899999999999999999999999999 655 5778899999999999999999874
No 52
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-35 Score=268.96 Aligned_cols=202 Identities=63% Similarity=1.011 Sum_probs=187.8
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
.+|+++++++.+++.+.+.||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.....++++||++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 56999999999999999999999999999999999999999999999999999999999998876666678999999999
Q ss_pred HHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC
Q 011446 200 LALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (485)
Q Consensus 200 la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (485)
|+.|+.+.+.++.... +..+...+|+.....+...+...++|+|+||+++.+.+.+....+.++++||+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999998877 788999999999888877777889999999999999888877778899999999999999999
Q ss_pred CHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEE
Q 011446 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVI 321 (485)
Q Consensus 279 ~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~ 321 (485)
|...+..++..++.+.|++++|||+|..+.+++..++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999899999999999999999999999988654
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.4e-36 Score=314.25 Aligned_cols=286 Identities=16% Similarity=0.136 Sum_probs=209.6
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHH
Q 011446 128 KRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQV 207 (485)
Q Consensus 128 ~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~ 207 (485)
..+.++.+.+. .. |.+.......+.+++++++||||||||+. ++..+...+ .++|++|+++||.|+++.
T Consensus 130 ~~d~l~~i~dl--~~--p~~~~p~ar~l~rk~vlv~apTGSGKT~~----al~~l~~~~---~gl~l~PtR~LA~Qi~~~ 198 (677)
T 3rc3_A 130 CKDDLRKISDL--RI--PPNWYPDARAMQRKIIFHSGPTNSGKTYH----AIQKYFSAK---SGVYCGPLKLLAHEIFEK 198 (677)
T ss_dssp CHHHHHHHTBC--CC--GGGGCHHHHTSCCEEEEEECCTTSSHHHH----HHHHHHHSS---SEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHhhc--cC--hhhhCHHHHhcCCCEEEEEcCCCCCHHHH----HHHHHHhcC---CeEEEeCHHHHHHHHHHH
Confidence 33444555432 22 33434444566889999999999999984 444444433 348999999999999998
Q ss_pred HHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHH
Q 011446 208 CKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLI 287 (485)
Q Consensus 208 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~ 287 (485)
+.+. ++.+..++|+..... .......+++++|++.+. ....+++|||||||++++.++...+..++
T Consensus 199 l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l 264 (677)
T 3rc3_A 199 SNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRAL 264 (677)
T ss_dssp HHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHH
T ss_pred HHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHH
Confidence 8775 677888888866510 000123678888886542 24678999999999999999999999998
Q ss_pred HhCC-CCCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecC
Q 011446 288 RFLP-ANRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNS 366 (485)
Q Consensus 288 ~~~~-~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~ 366 (485)
..++ ...+++++|||.+ .+..+.... ..+..+...... .... + . .. . + ..+.... ...+|||++
T Consensus 265 ~~l~~~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~--~~l~--~-~-~~--~---l-~~l~~~~-~g~iIf~~s 329 (677)
T 3rc3_A 265 LGLCAEEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKRL--TPIS--V-L-DH--A---L-ESLDNLR-PGDCIVCFS 329 (677)
T ss_dssp HHCCEEEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCCS--SCEE--E-C-SS--C---C-CSGGGCC-TTEEEECSS
T ss_pred HccCccceEEEeccchHH-HHHHHHHhc-CCceEEEEeeec--chHH--H-H-HH--H---H-HHHHhcC-CCCEEEEcC
Confidence 8887 7789999999964 344444433 222222111100 0010 0 0 00 0 0 0111222 345889999
Q ss_pred hhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhc--CCccEEEEccccccCCCCCCCCEEEEcCC----------
Q 011446 367 VNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN--GACRNLVCTDLFTRGIDIQAVNVVINFDF---------- 434 (485)
Q Consensus 367 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~--g~~~vlvaT~~~~~Gidi~~v~~VI~~~~---------- 434 (485)
+++++.+++.|.+.++.+.++||+|++++|..+++.|++ |.++|||||+++++|||+ ++++||++++
T Consensus 330 ~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~ 408 (677)
T 3rc3_A 330 KNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGE 408 (677)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--------
T ss_pred HHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCc
Confidence 999999999999999999999999999999999999999 889999999999999999 9999999999
Q ss_pred ----CCChHHHHHHhhhccccCcc
Q 011446 435 ----PKNSETYLHRVCWIQLSFSL 454 (485)
Q Consensus 435 ----p~s~~~~~Qr~GRagR~g~~ 454 (485)
|.|.++|+||+|||||.|.-
T Consensus 409 ~~~~p~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 409 RELEPITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp ---CBCCHHHHHHHHTTBTCTTSS
T ss_pred cccccCCHHHHHHHhcCCCCCCCC
Confidence 77999999999999999854
No 54
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.4e-36 Score=316.96 Aligned_cols=297 Identities=13% Similarity=0.172 Sum_probs=185.7
Q ss_pred CCcHHHHHHHHHHhc----C-CCEEEEccCCCchhHHhHHHHHhhhhcc------CCceEEEEEcCcHHHHHHHH-HHHH
Q 011446 142 RPSPIQEESIPIALT----G-SDILARAKNGTGKTAAFCIPALEKIDQD------NNVIQVVILVPTRELALQTS-QVCK 209 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~----~-~~~ii~~~TGsGKT~~~~~~~l~~l~~~------~~~~~~lil~P~~~la~q~~-~~~~ 209 (485)
.|+++|.++++.++. + ++++++++||||||++++..+...+... ..+.++||++|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999886 4 5699999999999999665544433322 14569999999999999988 6665
Q ss_pred HHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc----CccccCCcceEEeeccccccCCCCHHHHHH
Q 011446 210 ELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK----GVCILKDCSMLVMDEADKLLSPEFQPSVEQ 285 (485)
Q Consensus 210 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~----~~~~l~~~~~iViDEah~~~~~~~~~~~~~ 285 (485)
.+. ..+..+.++ ......+|+|+||++|...... .......+++||+||||++.... ...+..
T Consensus 258 ~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 543 333333332 1235679999999999876531 12335678999999999986532 244566
Q ss_pred HHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEE------------------eeccccccccceE-------------
Q 011446 286 LIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVI------------------NLMDELTLKGITQ------------- 334 (485)
Q Consensus 286 i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~------------- 334 (485)
++..++ ..++++||||+..........++..+... .+...........
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 777765 46789999997633222222333322211 1111100000000
Q ss_pred --EEEeeh------hhhhH----HHHHHHHHh-cCCCcEEEEecChhHHHHHHHHHHHcCCe--------EEEEcCCCCH
Q 011446 335 --YYAFVE------ERQKV----HCLNTLFSK-LQINQSIIFCNSVNRVELLAKKITELGYS--------CFYIHAKMLQ 393 (485)
Q Consensus 335 --~~~~~~------~~~~~----~~l~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~--------~~~~h~~~~~ 393 (485)
.+.... ...+. ..+..++.. ...+++||||+++++|+.+++.|.+.+.. +..+||.++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~- 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG- 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-
Confidence 000000 00111 123233333 24479999999999999999999876432 778899875
Q ss_pred HHHHHHHHHHhcCCcc---EEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCc
Q 011446 394 DHRNRVFHDFRNGACR---NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 394 ~~r~~i~~~f~~g~~~---vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~ 453 (485)
++|..+++.|++|+.+ |||||+++++|+|+|++++||+++.|.|...|+||+||+||.|.
T Consensus 483 ~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4799999999998766 88899999999999999999999999999999999999999764
No 55
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=273.42 Aligned_cols=205 Identities=32% Similarity=0.568 Sum_probs=189.2
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
...|+++++++.+.+.+.+.||..|+++|.++++.++.++++++.+|||||||++|++|++..+.....+.++||++|++
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr 121 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR 121 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSH
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCH
Confidence 35699999999999999999999999999999999999999999999999999999999999888766667899999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc-CccccCCcceEEeeccccccCC
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEADKLLSP 277 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~-~~~~l~~~~~iViDEah~~~~~ 277 (485)
+|+.|+.+.+++++...++.+..++|+.....+...+..+++|+|+||++|.+++.. ....+.++++||+||||++.+.
T Consensus 122 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 201 (249)
T 3ber_A 122 ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNM 201 (249)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhcc
Confidence 999999999999998889999999999988877777778899999999999998875 3456889999999999999999
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEee
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINL 323 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~ 323 (485)
+|...+..++..++.+.|+++||||++..+.+++..++.+|..+.+
T Consensus 202 ~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 202 DFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp TCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999977654
No 56
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.2e-35 Score=270.09 Aligned_cols=211 Identities=38% Similarity=0.625 Sum_probs=184.7
Q ss_pred cccccCCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEE
Q 011446 112 EDVTATKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQV 191 (485)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~ 191 (485)
.+....+...|+++++++.+.+.+.+.||..|+++|.++++.++.++++++++|||+|||++|++|++..+.....+.++
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 95 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQI 95 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceE
Confidence 34445556789999999999999999999999999999999999999999999999999999999999988766666799
Q ss_pred EEEcCcHHHHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeec
Q 011446 192 VILVPTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDE 270 (485)
Q Consensus 192 lil~P~~~la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDE 270 (485)
||++|+++|+.|+.+.++++.... ++.+..++|+.....+...+ ..++|+|+||++|.+++......+.++++||+||
T Consensus 96 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 96 LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 999999999999999999998765 78899999998877665554 5789999999999998887777788999999999
Q ss_pred cccccCCC-CHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEee
Q 011446 271 ADKLLSPE-FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINL 323 (485)
Q Consensus 271 ah~~~~~~-~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~ 323 (485)
||++++.+ |...+..++..++.+.|++++|||++..+.++...++.+|..+.+
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99998886 999999999999989999999999999999999999998876643
No 57
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.4e-35 Score=271.22 Aligned_cols=205 Identities=34% Similarity=0.553 Sum_probs=186.6
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
..|+++++++.+.+.+.+.||..|+++|.++++.+++++++++++|||+|||++|++|++..+.....+.++||++|+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999999877666679999999999
Q ss_pred HHHHHHHHHHHHhccC----CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeecccccc
Q 011446 200 LALQTSQVCKELGKHL----NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL 275 (485)
Q Consensus 200 la~q~~~~~~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~ 275 (485)
|+.|+.+.++++.... +..+..++|+.........+..+++|+|+||+++.+++......+.++++||+||||++.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 9999999999998776 678888899887666555555678999999999999888877778899999999999999
Q ss_pred CCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeec
Q 011446 276 SPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (485)
Q Consensus 276 ~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (485)
+.+|...+..++..++.+.|++++|||++.++.+++..++.+|..+.+.
T Consensus 164 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 164 DMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred hhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 9999999999999999999999999999999999999999999777554
No 58
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.2e-35 Score=272.16 Aligned_cols=205 Identities=36% Similarity=0.614 Sum_probs=177.9
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
...|+++++++.+.+.+.+.||..|+++|.++++.++.++++++.+|||||||++|++|++..+.....+.++||++|++
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 45799999999999999999999999999999999999999999999999999999999999887655667999999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCC-CeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP-VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~-~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (485)
+|+.|+.+.+++++...+..+...+|+.....+...+..+ ++|+|+||++|.+++.+....+.++++||+||||++.+.
T Consensus 109 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~ 188 (237)
T 3bor_A 109 ELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR 188 (237)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhcc
Confidence 9999999999999988888899999988777666555544 899999999999988887777889999999999999988
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEee
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINL 323 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~ 323 (485)
+|...+..++..++.+.|++++|||++..+.+++..++.+|..+.+
T Consensus 189 ~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 189 GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp TCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999999999999999999999999999877654
No 59
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=270.16 Aligned_cols=205 Identities=33% Similarity=0.587 Sum_probs=179.5
Q ss_pred CCCCcccc-cCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc------CCce
Q 011446 117 TKGNEFED-YFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD------NNVI 189 (485)
Q Consensus 117 ~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~------~~~~ 189 (485)
.+...|++ +++++.+++++.+.||..|+++|.++++.+++++++++.+|||||||++|++|++..+... ..++
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 34456888 7999999999999999999999999999999999999999999999999999999877542 2456
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEee
Q 011446 190 QVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMD 269 (485)
Q Consensus 190 ~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViD 269 (485)
++||++|+++|+.|+.+.+.++. ..+..+..++|+.....+...+..+++|+|+||+++.+++......+.++++||+|
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 174 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVID 174 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEEC
T ss_pred cEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEE
Confidence 89999999999999999999986 45788889999988887777777889999999999999888877778999999999
Q ss_pred ccccccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEe
Q 011446 270 EADKLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVIN 322 (485)
Q Consensus 270 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~ 322 (485)
|||++++.+|...+..++..++++.|++++|||+|..+.+++..++.+|..+.
T Consensus 175 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 175 EADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred CHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999987664
No 60
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.8e-34 Score=265.01 Aligned_cols=205 Identities=39% Similarity=0.637 Sum_probs=179.8
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
...|+++++++.+.+.+.+.||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.....+.++||++|++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 45799999999999999999999999999999999999999999999999999999999999987766677999999999
Q ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC
Q 011446 199 ELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE 278 (485)
Q Consensus 199 ~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~ 278 (485)
+|+.|+.+.+.++....++.+..++|+.....+...+. .++|+|+||++|.+.+.+....+.++++||+||||++.+.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 171 (224)
T 1qde_A 93 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG 171 (224)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhh
Confidence 99999999999999888899999999887766655543 48999999999999888877778899999999999999999
Q ss_pred CHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeec
Q 011446 279 FQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (485)
Q Consensus 279 ~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (485)
|...+..++..++.+.|++++|||++..+.++...++.+|..+.+.
T Consensus 172 ~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 172 FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999777554
No 61
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.3e-35 Score=278.13 Aligned_cols=205 Identities=37% Similarity=0.599 Sum_probs=183.5
Q ss_pred CCCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEE
Q 011446 117 TKGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVIL 194 (485)
Q Consensus 117 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil 194 (485)
....+|+++++++.+++.+.++||..|+++|.++|+.++.+ +++++++|||||||++|++|++..+.....++++||+
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 34578999999999999999999999999999999999997 8999999999999999999999999877777799999
Q ss_pred cCcHHHHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhc-CccccCCcceEEeeccc
Q 011446 195 VPTRELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEAD 272 (485)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~-~~~~l~~~~~iViDEah 272 (485)
+||++||.|+++.+..+.... ++.+...+|+...... ....++|+|+||++|++++.+ ....+.++++|||||||
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 999999999999999998765 6788888887765422 145679999999999998865 45668899999999999
Q ss_pred cccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeec
Q 011446 273 KLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (485)
Q Consensus 273 ~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (485)
++++ .+|...+..++..++.++|++++|||++..+..++..++.+|..+.+.
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 9987 689999999999999999999999999999999999999999887654
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=264.80 Aligned_cols=205 Identities=37% Similarity=0.569 Sum_probs=182.7
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc----CCceEEEEE
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD----NNVIQVVIL 194 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~----~~~~~~lil 194 (485)
...|+++++++.+.+.+.+.||..|+++|.++++.++.++++++++|||+|||++|++|++..+... ..+.++||+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 4579999999999999999999999999999999999999999999999999999999999887542 234589999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC-ccccCCcceEEeecccc
Q 011446 195 VPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEADK 273 (485)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~-~~~l~~~~~iViDEah~ 273 (485)
+|+++|+.|+.+.++++....++.+..++|+.....+...+ .+++|+|+||+++.+.+... ...+.++++||+||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999988889999999998877665555 57899999999999887764 45578899999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEeec
Q 011446 274 LLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (485)
Q Consensus 274 ~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (485)
+.+.+|...+..++..++.+.|++++|||++..+.++...++.+|..+.+.
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999877654
No 63
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=5.5e-34 Score=258.38 Aligned_cols=201 Identities=38% Similarity=0.670 Sum_probs=182.2
Q ss_pred cccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc---CCceEEEEEcCc
Q 011446 121 EFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILVPT 197 (485)
Q Consensus 121 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P~ 197 (485)
+|+++++++.+.+.+.+.|+..|+++|.++++.+++++++++.+|||+|||++|++|++..+... ..++++||++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999987642 345689999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCC
Q 011446 198 RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSP 277 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~ 277 (485)
++|+.|+.+.+.++... ..+..++|+.....+...+..+++|+|+||+++.+++......+.++++||+||||++.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998764 6778888988877776666678999999999999988887777899999999999999888
Q ss_pred CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEee
Q 011446 278 EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVINL 323 (485)
Q Consensus 278 ~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~ 323 (485)
+|...+..++..++.+.|++++|||++..+.++...++.+|..+.+
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999999999999999999999999999999977653
No 64
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=269.21 Aligned_cols=201 Identities=39% Similarity=0.539 Sum_probs=179.1
Q ss_pred CcccccC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC----CceEEEE
Q 011446 120 NEFEDYF--LKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN----NVIQVVI 193 (485)
Q Consensus 120 ~~~~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----~~~~~li 193 (485)
..|++++ +++.+++.+.+.||..|+++|.++++.++.++++++++|||||||++|++|++..+.... .+.++||
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 4566666 999999999999999999999999999999999999999999999999999998876522 3458999
Q ss_pred EcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcC-ccccCCcceEEeeccc
Q 011446 194 LVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKG-VCILKDCSMLVMDEAD 272 (485)
Q Consensus 194 l~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~-~~~l~~~~~iViDEah 272 (485)
++|+++|+.|+.+.+++++...+..+..++|+.....+...+..+++|+|+||+++..++... ...+.++++||+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 999999999999999999998899999999999988887777778999999999999887764 3568899999999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeE
Q 011446 273 KLLSPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYV 320 (485)
Q Consensus 273 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~ 320 (485)
++++.+|...+..++..++..+|+++||||++..+.++...++.++..
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 999999999999999999999999999999999999999998876644
No 65
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.3e-34 Score=269.25 Aligned_cols=207 Identities=34% Similarity=0.580 Sum_probs=187.1
Q ss_pred CCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC---------Cc
Q 011446 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---------NV 188 (485)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---------~~ 188 (485)
....|+++++++.+.+.+.+.||..|+++|.++++.+++++++++++|||||||++|++|++..+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 345799999999999999999999999999999999999999999999999999999999998876432 23
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEe
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVM 268 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iVi 268 (485)
+++||++|+++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||++|.+++......+.++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 58999999999999999999999988889999999999988888888888999999999999998887777899999999
Q ss_pred eccccccCCCCHHHHHHHHHhC--CC--CCcEEEEecccchHHHHHHHHhcCCCeEEeec
Q 011446 269 DEADKLLSPEFQPSVEQLIRFL--PA--NRQILMFSATFPVTVKDFKDKYLQKPYVINLM 324 (485)
Q Consensus 269 DEah~~~~~~~~~~~~~i~~~~--~~--~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~ 324 (485)
||||++++.+|...+..++..+ +. +.|++++|||++..+.++...++.+|..+.+.
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999999853 33 67999999999999999999999998777654
No 66
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.3e-34 Score=261.65 Aligned_cols=205 Identities=38% Similarity=0.644 Sum_probs=182.5
Q ss_pred CCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
....|+++++++.+.+.+.+.||..|+++|.++++.+++++++++.+|||+|||++|++|++..+.....+.++||++|+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 34569999999999999999999999999999999999999999999999999999999999988765556689999999
Q ss_pred HHHHHHHHHHHHHHhccC-CceEEEEECCCChHHHHHHhc-CCCeEEEEcchHHHHhhhcCccccCCcceEEeecccccc
Q 011446 198 RELALQTSQVCKELGKHL-NIQVMVTTGGTSLKDDIMRLY-QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLL 275 (485)
Q Consensus 198 ~~la~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~-~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~ 275 (485)
++|+.|+.+.++++.... ++.+..++|+.....+...+. ..++|+|+||+++..++......+.++++||+||||+++
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 171 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 171 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHh
Confidence 999999999999998776 788999999988776655554 357999999999999888877778999999999999988
Q ss_pred C-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhcCCCeEEe
Q 011446 276 S-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYLQKPYVIN 322 (485)
Q Consensus 276 ~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~ 322 (485)
+ .+|...+..++..++.+.|++++|||++..+.++...++.+|..+.
T Consensus 172 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 172 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 6 4788889999999988999999999999999999999999987654
No 67
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.1e-34 Score=315.18 Aligned_cols=309 Identities=15% Similarity=0.136 Sum_probs=218.4
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceE
Q 011446 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v 219 (485)
.|+|+|.+++..++.. ..+|++++||+|||.+++..+...+..+ ...++|||||+ .|+.||...+.+.+ +..+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 6899999999988875 4699999999999999877776665543 33489999999 99999888876654 5555
Q ss_pred EEEECCCChHHHHH---HhcCCCeEEEEcchHHHHhhhc-CccccCCcceEEeeccccccCCCCH--HHHHHHHHhCCCC
Q 011446 220 MVTTGGTSLKDDIM---RLYQPVHLLVGTPGRILDLSKK-GVCILKDCSMLVMDEADKLLSPEFQ--PSVEQLIRFLPAN 293 (485)
Q Consensus 220 ~~~~g~~~~~~~~~---~~~~~~~Ili~Tp~~l~~~~~~-~~~~l~~~~~iViDEah~~~~~~~~--~~~~~i~~~~~~~ 293 (485)
..+.++.... ... ......+|+|+|++.+...... ......++++||+||||++.+.... ..+..+.......
T Consensus 228 ~v~~~~~~~~-~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 228 ALFDDERYAE-AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp EECCHHHHHH-HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEccchhhh-hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 5554432211 111 1123578999999988653211 1123457899999999998764422 2233333333345
Q ss_pred CcEEEEecccch----HHHHHHH----------------------------HhcCC------------------------
Q 011446 294 RQILMFSATFPV----TVKDFKD----------------------------KYLQK------------------------ 317 (485)
Q Consensus 294 ~~~i~~SATl~~----~~~~~~~----------------------------~~~~~------------------------ 317 (485)
..++++|||+-. ++..+.. .+...
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 568999999731 0000000 00000
Q ss_pred ----------------------------CeEEeec----cccccccceEEE-----------------------------
Q 011446 318 ----------------------------PYVINLM----DELTLKGITQYY----------------------------- 336 (485)
Q Consensus 318 ----------------------------~~~~~~~----~~~~~~~~~~~~----------------------------- 336 (485)
...+... ..++........
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARD 466 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHH
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhh
Confidence 0000000 000000000000
Q ss_pred ----------------EeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHH-cCCeEEEEcCCCCHHHHHHH
Q 011446 337 ----------------AFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITE-LGYSCFYIHAKMLQDHRNRV 399 (485)
Q Consensus 337 ----------------~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~r~~i 399 (485)
.......|...+..++.....+++||||+++..++.+++.|.. .|+.+..+||+|++.+|..+
T Consensus 467 ~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~ 546 (968)
T 3dmq_A 467 MLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRA 546 (968)
T ss_dssp HHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHH
T ss_pred hcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHH
Confidence 1122335678888888887788999999999999999999995 59999999999999999999
Q ss_pred HHHHhcCC--ccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccc
Q 011446 400 FHDFRNGA--CRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 400 ~~~f~~g~--~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~ 456 (485)
++.|++|+ ++|||||+++++|+|+|++++||++++|++...|.||+||+||.|+.+.
T Consensus 547 l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~ 605 (968)
T 3dmq_A 547 AAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHD 605 (968)
T ss_dssp HHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSC
T ss_pred HHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCce
Confidence 99999998 9999999999999999999999999999999999999999999988763
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=5.2e-33 Score=286.07 Aligned_cols=300 Identities=14% Similarity=0.165 Sum_probs=208.3
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.|+|+|.++++.+. .++++|++++||+|||++++..+. .+...+...++|||||+ .|+.||.+.+.++.. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~--~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKENELTPSLVICPL-SVLKNWEEELSKFAP--HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCT--TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCC--Cc
Confidence 69999999998874 467899999999999999655444 44433344589999995 688999999998875 34
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEE
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 297 (485)
.+..++|+... ......+|+|+|++.+..... .....+++||+||||++.+... .....+..++ ....+
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~-~~~~l 181 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELK-SKYRI 181 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSC-EEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhc-cCcEE
Confidence 56666665422 112457899999999865433 2234679999999999876542 2344455554 35679
Q ss_pred EEecccchH-HHHHH------------------------------------HHhcCCCeEEeecc-c----cccccceEE
Q 011446 298 MFSATFPVT-VKDFK------------------------------------DKYLQKPYVINLMD-E----LTLKGITQY 335 (485)
Q Consensus 298 ~~SATl~~~-~~~~~------------------------------------~~~~~~~~~~~~~~-~----~~~~~~~~~ 335 (485)
++|||+... ..++. ...+ .|..+.... . ...+.....
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~ 260 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDKIET 260 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCCeEE
Confidence 999997321 11111 1111 122221100 0 001111111
Q ss_pred EEeeh---------------------------------------------------------hhhhHHHHHHHHHhc--C
Q 011446 336 YAFVE---------------------------------------------------------ERQKVHCLNTLFSKL--Q 356 (485)
Q Consensus 336 ~~~~~---------------------------------------------------------~~~~~~~l~~l~~~~--~ 356 (485)
...++ ...|...+..++... .
T Consensus 261 ~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~ 340 (500)
T 1z63_A 261 NVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDE 340 (500)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHcc
Confidence 11110 112334444555443 4
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-CCeEEEEcCCCCHHHHHHHHHHHhcC-Ccc-EEEEccccccCCCCCCCCEEEEcC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFRNG-ACR-NLVCTDLFTRGIDIQAVNVVINFD 433 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~i~~~f~~g-~~~-vlvaT~~~~~Gidi~~v~~VI~~~ 433 (485)
..++||||++...++.+++.|... ++.+..+||+++..+|..+++.|++| ..+ +|++|+++++|+|++++++||++|
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d 420 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD 420 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESS
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeC
Confidence 569999999999999999999885 99999999999999999999999998 454 799999999999999999999999
Q ss_pred CCCChHHHHHHhhhccccCccccc
Q 011446 434 FPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 434 ~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
+|+|+..|.||+||++|.|+....
T Consensus 421 ~~~~~~~~~Q~~gR~~R~Gq~~~v 444 (500)
T 1z63_A 421 RWWNPAVEDQATDRVYRIGQTRNV 444 (500)
T ss_dssp CCSCC---CHHHHTTTTTTTTSCE
T ss_pred CCCCcchHHHHHHHHHHcCCCCee
Confidence 999999999999999999886543
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=256.83 Aligned_cols=206 Identities=29% Similarity=0.462 Sum_probs=174.3
Q ss_pred Cccccc----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc-CCceEEEEE
Q 011446 120 NEFEDY----FLKRELLMGIFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD-NNVIQVVIL 194 (485)
Q Consensus 120 ~~~~~~----~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~-~~~~~~lil 194 (485)
.+|+++ ++++.+++.+.+.||..|+++|.++++.+++++++++.+|||||||++|++|++..+... ..+.++||+
T Consensus 25 ~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil 104 (245)
T 3dkp_A 25 ATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALII 104 (245)
T ss_dssp SSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEE
T ss_pred cCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEE
Confidence 456655 899999999999999999999999999999999999999999999999999999988643 345689999
Q ss_pred cCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHH-HHhcCCCeEEEEcchHHHHhhhcC--ccccCCcceEEeecc
Q 011446 195 VPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI-MRLYQPVHLLVGTPGRILDLSKKG--VCILKDCSMLVMDEA 271 (485)
Q Consensus 195 ~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~~Ili~Tp~~l~~~~~~~--~~~l~~~~~iViDEa 271 (485)
+|+++|+.|+.+.+.++....+..+..++|+....... .....+++|+|+||++|..++... ...+.++++||+|||
T Consensus 105 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEa 184 (245)
T 3dkp_A 105 SPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDES 184 (245)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSH
T ss_pred eCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeCh
Confidence 99999999999999999988888887776654332221 122356899999999999988775 456889999999999
Q ss_pred ccccC---CCCHHHHHHHHHhC-CCCCcEEEEecccchHHHHHHHHhcCCCeEEeecc
Q 011446 272 DKLLS---PEFQPSVEQLIRFL-PANRQILMFSATFPVTVKDFKDKYLQKPYVINLMD 325 (485)
Q Consensus 272 h~~~~---~~~~~~~~~i~~~~-~~~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~ 325 (485)
|++++ .+|...+..++..+ +.+.|+++||||+|.++.++...++.+|..+.+..
T Consensus 185 h~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 185 DKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp HHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 99987 57888888888776 45789999999999999999999999998877643
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=2.4e-31 Score=270.25 Aligned_cols=307 Identities=16% Similarity=0.109 Sum_probs=223.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce
Q 011446 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ 218 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~ 218 (485)
|+ .++++|.-+.-.+..|+ |..+.||+|||+++.+|++-.... +..+.|++|+..||.+-++++..+...+|++
T Consensus 73 g~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~~~Lgls 146 (822)
T 3jux_A 73 GM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVYLFLGLR 146 (822)
T ss_dssp SC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHHHHhCCE
Confidence 44 68999999888887776 999999999999999999855443 2368999999999999999999999999999
Q ss_pred EEEEECCC--------------------------------------------------ChHHHHHHhcCCCeEEEEcchH
Q 011446 219 VMVTTGGT--------------------------------------------------SLKDDIMRLYQPVHLLVGTPGR 248 (485)
Q Consensus 219 v~~~~g~~--------------------------------------------------~~~~~~~~~~~~~~Ili~Tp~~ 248 (485)
+++++... +..+ +.....++|.|+|..-
T Consensus 147 vg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e--rr~aY~~DItYgTn~E 224 (822)
T 3jux_A 147 VGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT--RKEAYLCDVTYGTNNE 224 (822)
T ss_dssp EEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC--HHHHHHSSEEEEEHHH
T ss_pred EEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH--HHHHhcCCCEEccCcc
Confidence 99988721 1111 1112357999999987
Q ss_pred HHH-hhhc------CccccCCcceEEeeccccccCC-------------CCHHHHHH---HHHh----------------
Q 011446 249 ILD-LSKK------GVCILKDCSMLVMDEADKLLSP-------------EFQPSVEQ---LIRF---------------- 289 (485)
Q Consensus 249 l~~-~~~~------~~~~l~~~~~iViDEah~~~~~-------------~~~~~~~~---i~~~---------------- 289 (485)
|-- ++.. .......+.+.||||+|.++=+ .-...+.. +...
T Consensus 225 fgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v 304 (822)
T 3jux_A 225 FGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTI 304 (822)
T ss_dssp HHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCE
T ss_pred hhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeE
Confidence 632 2221 1233567899999999976500 00000000 0000
Q ss_pred ----------------------------------------CCC-------------------------------------
Q 011446 290 ----------------------------------------LPA------------------------------------- 292 (485)
Q Consensus 290 ----------------------------------------~~~------------------------------------- 292 (485)
+..
T Consensus 305 ~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEa 384 (822)
T 3jux_A 305 ILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEA 384 (822)
T ss_dssp EECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHH
T ss_pred EECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHH
Confidence 000
Q ss_pred ------------------------CCcEEEEecccchHHHHHHHHhcCCCeEEeeccccccccceE-EEEeehhhhhHHH
Q 011446 293 ------------------------NRQILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQ-YYAFVEERQKVHC 347 (485)
Q Consensus 293 ------------------------~~~~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 347 (485)
-.++.+||+|+.....++...|..+ ++.++...+.....+ ...+.....|...
T Consensus 385 KEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnkp~~R~d~~d~vy~t~~eK~~a 462 (822)
T 3jux_A 385 KEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTHKPMIRKDHDDLVFRTQKEKYEK 462 (822)
T ss_dssp HHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCSSCCCCEECCCEEESSHHHHHHH
T ss_pred HcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCCCCcceeecCcEEEecHHHHHHH
Confidence 0168999999998887777666432 333333222222222 2334566677777
Q ss_pred HHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC-
Q 011446 348 LNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ- 424 (485)
Q Consensus 348 l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~- 424 (485)
+...+... ...++||||+|++.++.++..|.+.|+.+..+||+....++..+...++.| .|+|||++|+||+||+
T Consensus 463 l~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~l 540 (822)
T 3jux_A 463 IVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKL 540 (822)
T ss_dssp HHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCC
T ss_pred HHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccC
Confidence 77766543 456999999999999999999999999999999996666665566666655 6999999999999998
Q ss_pred -------CCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 425 -------AVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 425 -------~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
+..+||+++.|.|...|+||+||+||.|.-|..
T Consensus 541 g~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 541 GPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp CTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred CcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 667999999999999999999999999988774
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=1.8e-30 Score=273.45 Aligned_cols=307 Identities=14% Similarity=0.179 Sum_probs=210.8
Q ss_pred CCcHHHHHHHHHHh---------cCCCEEEEccCCCchhHHhHHHHHhhhhccC----CceEEEEEcCcHHHHHHHHHHH
Q 011446 142 RPSPIQEESIPIAL---------TGSDILARAKNGTGKTAAFCIPALEKIDQDN----NVIQVVILVPTRELALQTSQVC 208 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~---------~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~P~~~la~q~~~~~ 208 (485)
.++|||.+++..+. .+..+|+..+||+|||++++..+...+...+ ...++|||||+ +|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999875 3456999999999999998777666554432 22368999997 7888999999
Q ss_pred HHHhccCCceEEEEECCCChHHH--HHHh-c-----CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCH
Q 011446 209 KELGKHLNIQVMVTTGGTSLKDD--IMRL-Y-----QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQ 280 (485)
Q Consensus 209 ~~~~~~~~~~v~~~~g~~~~~~~--~~~~-~-----~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~ 280 (485)
.++... .+.+..++++...... .... . ...+|+|+|++.+..... .+....+++||+||||++.+.. .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~-~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-N 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-h
Confidence 888754 4556666665433211 1111 1 247899999999876443 2223468999999999987644 2
Q ss_pred HHHHHHHHhCCCCCcEEEEecccchH-------------------HHHHHHHhc--------------------------
Q 011446 281 PSVEQLIRFLPANRQILMFSATFPVT-------------------VKDFKDKYL-------------------------- 315 (485)
Q Consensus 281 ~~~~~i~~~~~~~~~~i~~SATl~~~-------------------~~~~~~~~~-------------------------- 315 (485)
... ..+..+. ....+++|||+-.+ ...|...|.
T Consensus 210 ~~~-~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 210 QTY-LALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp HHH-HHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred HHH-HHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 223 3333343 34679999996211 001111000
Q ss_pred ---CCCeEEeecccc---ccccceEEEEe---------------------------------------------------
Q 011446 316 ---QKPYVINLMDEL---TLKGITQYYAF--------------------------------------------------- 338 (485)
Q Consensus 316 ---~~~~~~~~~~~~---~~~~~~~~~~~--------------------------------------------------- 338 (485)
-.|.++.-.... ..+........
T Consensus 288 ~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 288 ISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp HHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHH
Confidence 000000000000 00000000000
Q ss_pred ---------------------------ehhhhhHHHHHHHHHh---cCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEc
Q 011446 339 ---------------------------VEERQKVHCLNTLFSK---LQINQSIIFCNSVNRVELLAKKITELGYSCFYIH 388 (485)
Q Consensus 339 ---------------------------~~~~~~~~~l~~l~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h 388 (485)
.....|...+..++.. ....++||||+....++.+.+.|...++.+..+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~ 447 (644)
T 1z3i_X 368 EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 447 (644)
T ss_dssp HHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEe
Confidence 0012233444444443 2467999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCcc---EEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccc
Q 011446 389 AKMLQDHRNRVFHDFRNGACR---NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLS 455 (485)
Q Consensus 389 ~~~~~~~r~~i~~~f~~g~~~---vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~ 455 (485)
|+++..+|..+++.|.+|... +||+|.++++|+|++++++||++|+|+|+..+.|++||++|.|+..
T Consensus 448 G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~ 517 (644)
T 1z3i_X 448 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 517 (644)
T ss_dssp SSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCS
T ss_pred CCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCC
Confidence 999999999999999998653 8999999999999999999999999999999999999999999764
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=2.2e-31 Score=289.11 Aligned_cols=299 Identities=13% Similarity=0.142 Sum_probs=203.6
Q ss_pred CCcHHHHHHHHHHhc--------------CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHH
Q 011446 142 RPSPIQEESIPIALT--------------GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQV 207 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~--------------~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~ 207 (485)
.|+|+|.++++.++. +++.+++++||||||+++ ++++..+...+...++|||||+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999999875 367999999999999997 66665555434446999999999999999998
Q ss_pred HHHHhccCCceEEEEECCCChHHHHHHh-cCCCeEEEEcchHHHHhhhcCc--cccCCcceEEeeccccccCCCCHHHHH
Q 011446 208 CKELGKHLNIQVMVTTGGTSLKDDIMRL-YQPVHLLVGTPGRILDLSKKGV--CILKDCSMLVMDEADKLLSPEFQPSVE 284 (485)
Q Consensus 208 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~~~~~~--~~l~~~~~iViDEah~~~~~~~~~~~~ 284 (485)
+..+.... +.++.+.......+ ....+|+|+||++|...+.... ..+..+.+||+||||++. +...+.
T Consensus 350 f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~---~~~~~~ 420 (1038)
T 2w00_A 350 YQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ---FGEAQK 420 (1038)
T ss_dssp HHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH---HHHHHH
T ss_pred HHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc---chHHHH
Confidence 88876421 23444444444444 3568999999999998765432 235678999999999964 234456
Q ss_pred HHHHhCCCCCcEEEEecccchHHH----HHHHHhcCC-----------------CeEEeecc---cccc----------c
Q 011446 285 QLIRFLPANRQILMFSATFPVTVK----DFKDKYLQK-----------------PYVINLMD---ELTL----------K 330 (485)
Q Consensus 285 ~i~~~~~~~~~~i~~SATl~~~~~----~~~~~~~~~-----------------~~~~~~~~---~~~~----------~ 330 (485)
.+...++ +.++++||||+..... .....++.. |..+.... .... .
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred HHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHH
Confidence 6666665 5789999999863210 011111121 21111100 0000 0
Q ss_pred cceEEEEeehhhhhHHH-HHHHHHhc-----------CCCcEEEEecChhHHHHHHHHHHHcC------------CeEE-
Q 011446 331 GITQYYAFVEERQKVHC-LNTLFSKL-----------QINQSIIFCNSVNRVELLAKKITELG------------YSCF- 385 (485)
Q Consensus 331 ~~~~~~~~~~~~~~~~~-l~~l~~~~-----------~~~~~lVf~~~~~~~~~l~~~L~~~~------------~~~~- 385 (485)
.+....... ...+... +..++.+. ...++||||+++..|..+++.|.+.+ +.+.
T Consensus 500 ~i~~~~~l~-~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 500 AAENQQAFL-HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HTCSTTTTT-CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 000000000 1111112 22233321 23479999999999999999998764 4554
Q ss_pred EEcCC----------C----------CHH-----------------------------HHHHHHHHHhcCCccEEEEccc
Q 011446 386 YIHAK----------M----------LQD-----------------------------HRNRVFHDFRNGACRNLVCTDL 416 (485)
Q Consensus 386 ~~h~~----------~----------~~~-----------------------------~r~~i~~~f~~g~~~vlvaT~~ 416 (485)
.+|+. + ++. .|..++++|++|.++|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 45542 2 221 3788999999999999999999
Q ss_pred cccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCc
Q 011446 417 FTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFS 453 (485)
Q Consensus 417 ~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~ 453 (485)
+.+|+|+|.+ +|+.+|.|.+...|+|++||++|.+.
T Consensus 659 lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred HHhCcCcccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 9999999999 78899999999999999999999764
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.8e-31 Score=286.46 Aligned_cols=308 Identities=16% Similarity=0.163 Sum_probs=217.9
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 142 RPSPIQEESIPIAL----TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~----~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.++|||.+++..++ .++++|++.+||+|||++++..+...+........+||||| ..++.||.+.+.+++. +.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 79999999999776 67889999999999999977666555444344457899999 5678889988888864 46
Q ss_pred eEEEEECCCChHHHHHH------------hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHH
Q 011446 218 QVMVTTGGTSLKDDIMR------------LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQ 285 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~------------~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~ 285 (485)
.+...+|+......... .....+|+|+|++.+...... +....+++||+||||++.+..- ....
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~s--~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAES--SLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSSS--HHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCchh--HHHH
Confidence 67777776655543332 123578999999999764332 1123578999999999865432 3444
Q ss_pred HHHhCCCCCcEEEEecccc----hHHHHHHHHhc-----------------------------CCCeEEeecc-cc--cc
Q 011446 286 LIRFLPANRQILMFSATFP----VTVKDFKDKYL-----------------------------QKPYVINLMD-EL--TL 329 (485)
Q Consensus 286 i~~~~~~~~~~i~~SATl~----~~~~~~~~~~~-----------------------------~~~~~~~~~~-~~--~~ 329 (485)
.+..+.. ...+++|||+- .++..++.... ..|.+..... .. ..
T Consensus 389 ~l~~l~~-~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 389 SLNSFKV-ANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp HHTTSEE-EEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred HHHHhhh-ccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 4455533 34689999971 11111111110 0111111000 00 00
Q ss_pred ccceEEEEee----------------------------------------------------------------------
Q 011446 330 KGITQYYAFV---------------------------------------------------------------------- 339 (485)
Q Consensus 330 ~~~~~~~~~~---------------------------------------------------------------------- 339 (485)
+........+
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 0000000000
Q ss_pred -----hhhhhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCc---c
Q 011446 340 -----EERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC---R 409 (485)
Q Consensus 340 -----~~~~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~---~ 409 (485)
....|...+..++... ...++||||.....++.|.+.|...++.+..+||+++..+|..+++.|.++.. .
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v 627 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFV 627 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCC
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceE
Confidence 0123555666666654 34599999999999999999999999999999999999999999999998554 4
Q ss_pred EEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 410 NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 410 vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
+|++|.++++|||++.+++||++|+|+|+..+.||+||++|.|+....
T Consensus 628 ~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 675 (800)
T 3mwy_W 628 FLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHV 675 (800)
T ss_dssp EEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCE
T ss_pred EEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceE
Confidence 899999999999999999999999999999999999999999886443
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=4.7e-27 Score=243.09 Aligned_cols=130 Identities=18% Similarity=0.197 Sum_probs=111.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 138 KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 138 ~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.|+ .|+++|..+++.++.|+ |+.+.||+|||++|.+|++..... +..++|++||++||.|.++++..++..+++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 588 99999999999999998 999999999999999999654443 237899999999999999999999999999
Q ss_pred eEEEEECCCChHHHHHHhcCCCeEEEEcchHH-HHhhhcCc------cccC---CcceEEeecccccc
Q 011446 218 QVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRI-LDLSKKGV------CILK---DCSMLVMDEADKLL 275 (485)
Q Consensus 218 ~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l-~~~~~~~~------~~l~---~~~~iViDEah~~~ 275 (485)
++.+++|+.+.... .....++|+|+||+.| .+++.... ..++ .+.++||||||+++
T Consensus 150 sv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999875433 3334689999999999 67766542 4567 89999999999876
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=9.6e-26 Score=237.16 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=93.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCC-
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF- 434 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~- 434 (485)
...++||||+++..++.+++.|.+.++.+..+||++++.+|..+++.|+.|+.+|||||+++++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChHHHHHHhhhccccC
Q 011446 435 ----PKNSETYLHRVCWIQLSF 452 (485)
Q Consensus 435 ----p~s~~~~~Qr~GRagR~g 452 (485)
|.|..+|+||+|||||.|
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST
T ss_pred ccCCCCCHHHHHHHHCccCcCC
Confidence 999999999999999974
No 76
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=195.35 Aligned_cols=158 Identities=28% Similarity=0.510 Sum_probs=134.4
Q ss_pred ccccceEEEEeehhhh-hHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 011446 328 TLKGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 406 (485)
Q Consensus 328 ~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g 406 (485)
...++.+++..++... |...+..++.....+++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567888888887655 999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEccccccCCCCCCCCEEEEcCCC------CChHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccc
Q 011446 407 ACRNLVCTDLFTRGIDIQAVNVVINFDFP------KNSETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTD 473 (485)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI~~~~p------~s~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~ 473 (485)
..+|||||+++++|+|+|++++||++|+| .+..+|+||+||+||.|+.+... ...+..+.+.....+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 99999999999999988655431 345666777777788
Q ss_pred cccCCCCCCCCC
Q 011446 474 RLVDLEGLDTLD 485 (485)
Q Consensus 474 ~~~~~~~l~~~~ 485 (485)
..++..++..|+
T Consensus 164 ~~~~~~~~~~~e 175 (175)
T 2rb4_A 164 KQLNAEDMDEIE 175 (175)
T ss_dssp EEECSSCCC---
T ss_pred cccCCchhcccC
Confidence 888877776654
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=5.7e-25 Score=190.72 Aligned_cols=147 Identities=33% Similarity=0.557 Sum_probs=129.8
Q ss_pred cccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 011446 327 LTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 406 (485)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g 406 (485)
...+++.+++..+....|...|..++.....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 44567888999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccc
Q 011446 407 ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTD 473 (485)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~ 473 (485)
..+|||||+++++|+|+|++++||++++|++..+|+||+||+||.|+-+... ...+..++++...++
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 158 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEI 158 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCc
Confidence 9999999999999999999999999999999999999999999998654432 234444555554443
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=1.1e-24 Score=229.00 Aligned_cols=106 Identities=18% Similarity=0.322 Sum_probs=97.0
Q ss_pred HHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCC
Q 011446 346 HCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ 424 (485)
Q Consensus 346 ~~l~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~ 424 (485)
.++..+.... ...++||||+++..++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 433 ~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip 512 (661)
T 2d7d_A 433 DLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIP 512 (661)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCT
T ss_pred HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccC
Confidence 3344444433 456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCC-----CCChHHHHHHhhhcccc
Q 011446 425 AVNVVINFDF-----PKNSETYLHRVCWIQLS 451 (485)
Q Consensus 425 ~v~~VI~~~~-----p~s~~~~~Qr~GRagR~ 451 (485)
++++||+++. |.|..+|+||+|||||.
T Consensus 513 ~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 513 EVSLVAILDADKEGFLRSERSLIQTIGRAARN 544 (661)
T ss_dssp TEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS
T ss_pred CCCEEEEeCcccccCCCCHHHHHHHhCcccCC
Confidence 9999999997 99999999999999997
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=1e-24 Score=190.62 Aligned_cols=149 Identities=32% Similarity=0.485 Sum_probs=129.7
Q ss_pred cccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCc
Q 011446 329 LKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC 408 (485)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~ 408 (485)
..++.+++..+....|...+..++.....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 35678888888899999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc--------hHHHHHHHHHhhccccccC
Q 011446 409 RNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN--------LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 409 ~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~--------~~~~~~~~~~~~~~~~~~~ 477 (485)
+|||||+++++|+|+|++++||++|+|+|...|+||+||+||.|+-+... ...+..++++...++..++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELP 159 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCC
Confidence 99999999999999999999999999999999999999999998755432 1234445555555544443
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=2.9e-24 Score=186.74 Aligned_cols=148 Identities=32% Similarity=0.574 Sum_probs=124.7
Q ss_pred ccceEEEEeehhhh-hHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCc
Q 011446 330 KGITQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGAC 408 (485)
Q Consensus 330 ~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~ 408 (485)
.++.+++..++... |...+..++.....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 35677777777666 99999999999888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccccc-------hHHHHHHHHHhhccccccC
Q 011446 409 RNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLPN-------LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 409 ~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~~-------~~~~~~~~~~~~~~~~~~~ 477 (485)
+|||||+++++|+|+|++++||++|+|++..+|+||+||+||.|+-+... ...+..++++.......++
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 157 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccC
Confidence 99999999999999999999999999999999999999999987654332 3345556666666555554
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=192.13 Aligned_cols=145 Identities=23% Similarity=0.332 Sum_probs=116.1
Q ss_pred HHHhcCCCeEEeecc-ccccccceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcC
Q 011446 311 KDKYLQKPYVINLMD-ELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHA 389 (485)
Q Consensus 311 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~ 389 (485)
...++.+|..+.+.. .....++.+++..+....|...|..++.... +++||||++++.++.+++.|...++.+..+||
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 345677777666543 3455788889888888999999999887753 58999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccc
Q 011446 390 KMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 390 ~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~ 456 (485)
+|++.+|..+++.|++|..+|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+-+.
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~ 153 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI 153 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCE
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999987553
No 82
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.92 E-value=4.8e-24 Score=192.95 Aligned_cols=145 Identities=23% Similarity=0.327 Sum_probs=124.4
Q ss_pred eEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEE
Q 011446 333 TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV 412 (485)
Q Consensus 333 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlv 412 (485)
.+.........|...+..++.....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..+|||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 34555667788999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc------c-hHHHHHHHHHhhccccccC
Q 011446 413 CTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP------N-LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 413 aT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~------~-~~~~~~~~~~~~~~~~~~~ 477 (485)
||+++++|+|+|++++||++|+|.|..+|+||+||+||.|+-|.. . ...+..++++....+...+
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 158 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecC
Confidence 999999999999999999999999999999999999999855433 2 2344445555555554443
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=186.41 Aligned_cols=130 Identities=33% Similarity=0.503 Sum_probs=107.4
Q ss_pred ccccceEEEEeehhhhhHHHHHHHHHhc-CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcC
Q 011446 328 TLKGITQYYAFVEERQKVHCLNTLFSKL-QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 406 (485)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g 406 (485)
..+++.+++..++...|...|..++... ...++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567889999998899999999999887 467999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 407 ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 407 ~~~vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
..+|||||+++++|+|+|++++||++|+|+|..+|+||+||+||.|+-+..
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~ 146 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 146 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE
Confidence 999999999999999999999999999999999999999999999865443
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=1.7e-24 Score=196.95 Aligned_cols=163 Identities=21% Similarity=0.203 Sum_probs=119.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhcc---CCceEEEEEcCcHHHHHH-HHHHHHHHhcc
Q 011446 139 GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILVPTRELALQ-TSQVCKELGKH 214 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P~~~la~q-~~~~~~~~~~~ 214 (485)
....|+++|.++++.++.++++++.+|||+|||++++++++..+... ..+.++||++|+++|+.| +.+.+.++...
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 45589999999999999999999999999999999999998776542 234589999999999999 67778877654
Q ss_pred CCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCc------cccCCcceEEeeccccccCCCCHHHHHH-HH
Q 011446 215 LNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGV------CILKDCSMLVMDEADKLLSPEFQPSVEQ-LI 287 (485)
Q Consensus 215 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~------~~l~~~~~iViDEah~~~~~~~~~~~~~-i~ 287 (485)
++.+..++|+.............++|+|+||+.|...+.... ..+.++++||+||||++...++...+.. ++
T Consensus 110 -~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 188 (216)
T 3b6e_A 110 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 188 (216)
T ss_dssp -TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHH
T ss_pred -CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHH
Confidence 677888888765544333334468999999999998877642 4578899999999999987665555432 22
Q ss_pred HhC-------------CCCCcEEEEecc
Q 011446 288 RFL-------------PANRQILMFSAT 302 (485)
Q Consensus 288 ~~~-------------~~~~~~i~~SAT 302 (485)
... .+..++|+||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHhcccccccccccCCCCcceEEEeecC
Confidence 211 157899999998
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=1.6e-23 Score=198.36 Aligned_cols=146 Identities=23% Similarity=0.325 Sum_probs=124.8
Q ss_pred ceEEEEeehhhhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEE
Q 011446 332 ITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNL 411 (485)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vl 411 (485)
+.+++..+....|...+..++.....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..+||
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vL 82 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVL 82 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEE
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEE
Confidence 46677778888999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc------c-hHHHHHHHHHhhccccccC
Q 011446 412 VCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP------N-LQFMCSMLMYICFTDRLVD 477 (485)
Q Consensus 412 vaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~------~-~~~~~~~~~~~~~~~~~~~ 477 (485)
|||+++++|+|+|++++||++|+|.+..+|+||+||+||.|+-|.. . ...+..++++....+...+
T Consensus 83 VaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~ 155 (300)
T 3i32_A 83 VATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVN 155 (300)
T ss_dssp EECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECC
T ss_pred EEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeC
Confidence 9999999999999999999999999999999999999998855433 2 3345556666665555443
No 86
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.4e-23 Score=190.85 Aligned_cols=174 Identities=16% Similarity=0.215 Sum_probs=127.8
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCC--ceEEEEEcCcHHHHHHHHHHHHHHh
Q 011446 135 IFEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNN--VIQVVILVPTRELALQTSQVCKELG 212 (485)
Q Consensus 135 l~~~~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~P~~~la~q~~~~~~~~~ 212 (485)
+.......++++|.++++.+..++++++.||||||||+++.++++......+. .+++++++|+++++.|+.+.+....
T Consensus 54 ~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 54 LQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp HHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHh
Confidence 33334446799999999999999999999999999999999998887655443 4589999999999999987665443
Q ss_pred -ccCCceEEEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccc-cCCCCH-HHHHHHHHh
Q 011446 213 -KHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL-LSPEFQ-PSVEQLIRF 289 (485)
Q Consensus 213 -~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~-~~~~~~-~~~~~i~~~ 289 (485)
...+..++....... ......++|+||||+++++++.. .++++++||+||||++ ++.+|. ..+..++..
T Consensus 134 ~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 134 GEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp TCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred ccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 333444443222111 11124578999999999998876 3789999999999975 555666 345555555
Q ss_pred CCCCCcEEEEecccchHHHHHHHHhcCCCe
Q 011446 290 LPANRQILMFSATFPVTVKDFKDKYLQKPY 319 (485)
Q Consensus 290 ~~~~~~~i~~SATl~~~~~~~~~~~~~~~~ 319 (485)
. ++.|+++||||++... +...+...|.
T Consensus 206 ~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 206 Y-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp C-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred C-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 4 5799999999998665 5555555443
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.81 E-value=1.4e-24 Score=189.67 Aligned_cols=127 Identities=32% Similarity=0.511 Sum_probs=116.3
Q ss_pred cceEEEEeehh-hhhHHHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCcc
Q 011446 331 GITQYYAFVEE-RQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACR 409 (485)
Q Consensus 331 ~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~ 409 (485)
++.+++..++. ..|...+..++.....+++||||++++.++.+++.|...++.+..+||+|++.+|..+++.|++|..+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 45566666666 77888888888887778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCccccc
Q 011446 410 NLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSLP 457 (485)
Q Consensus 410 vlvaT~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~~ 457 (485)
|||||+++++|+|+|++++||++++|+|..+|+||+||+||.|+.+..
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~ 130 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTA 130 (170)
Confidence 999999999999999999999999999999999999999999865543
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.87 E-value=2.6e-22 Score=206.89 Aligned_cols=271 Identities=17% Similarity=0.256 Sum_probs=150.0
Q ss_pred CCCCCcHHHHHHHHH----HhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhcc
Q 011446 139 GFERPSPIQEESIPI----ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKH 214 (485)
Q Consensus 139 ~~~~~~~~Q~~~i~~----i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~ 214 (485)
|| .++|+|.+++.. +..++++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l--- 74 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL--- 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG---
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc---
Confidence 56 799999998654 4578999999999999999999998764 348999999999999998877663
Q ss_pred CCceEEEEECCCCh--------H-H--------------------------------------HHHHhcCCCeEEEEcch
Q 011446 215 LNIQVMVTTGGTSL--------K-D--------------------------------------DIMRLYQPVHLLVGTPG 247 (485)
Q Consensus 215 ~~~~v~~~~g~~~~--------~-~--------------------------------------~~~~~~~~~~Ili~Tp~ 247 (485)
+.++..+.|.... . . ..+.....++|+|||+.
T Consensus 75 -~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~ 153 (540)
T 2vl7_A 75 -GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYP 153 (540)
T ss_dssp -TCCEEEC---------------------------------------------------------CTTGGGCSEEEEETH
T ss_pred -CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChH
Confidence 3444433332110 0 0 00111235799999999
Q ss_pred HHHHhhhcCcc-------ccCCcceEEeeccccccCC-C----------CHH----------------------------
Q 011446 248 RILDLSKKGVC-------ILKDCSMLVMDEADKLLSP-E----------FQP---------------------------- 281 (485)
Q Consensus 248 ~l~~~~~~~~~-------~l~~~~~iViDEah~~~~~-~----------~~~---------------------------- 281 (485)
.|.+....... .+.+.+++||||||.+.+. + +..
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~ 233 (540)
T 2vl7_A 154 YLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLID 233 (540)
T ss_dssp HHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 99764332111 2457789999999987320 0 000
Q ss_pred --------------------------HHHHHHH--------------------h---------------C-CCC------
Q 011446 282 --------------------------SVEQLIR--------------------F---------------L-PAN------ 293 (485)
Q Consensus 282 --------------------------~~~~i~~--------------------~---------------~-~~~------ 293 (485)
.+..++. . + |..
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l~ 313 (540)
T 2vl7_A 234 YMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLIE 313 (540)
T ss_dssp HHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHHH
T ss_pred HHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHHH
Confidence 0000000 0 0 000
Q ss_pred --Cc----EEEEecccchHHHHHHHHhcCCCeEEeeccccccccceEEEEe--e----hh-----hhhHHHHHHHHHhcC
Q 011446 294 --RQ----ILMFSATFPVTVKDFKDKYLQKPYVINLMDELTLKGITQYYAF--V----EE-----RQKVHCLNTLFSKLQ 356 (485)
Q Consensus 294 --~~----~i~~SATl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~-----~~~~~~l~~l~~~~~ 356 (485)
.. +|++|||+++.. . +...+........ .....+.. + +. ......+..++.. .
T Consensus 314 ~~~~~~~~~IltSATL~p~~-~-----~~~~f~~~~~~~~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~-~ 383 (540)
T 2vl7_A 314 DALNVKTFKVLMSGTLPESL-T-----LTNSYKIVVNESY---GRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYEN-S 383 (540)
T ss_dssp HHTCCSSCEEEEESSCCTTC-C-----CTTEEEEECCCC----CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHT-C
T ss_pred HhcCccCCeEEEcccCCCCc-c-----cchhcCCchhhee---cCCcceeccccCCCcccccCHHHHHHHHHHHHHHh-C
Confidence 11 377788876510 0 0000001110000 00000000 0 00 1122233333333 5
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEE--EccccccCCCCCC----CCEEE
Q 011446 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLV--CTDLFTRGIDIQA----VNVVI 430 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlv--aT~~~~~Gidi~~----v~~VI 430 (485)
++.+|||++|...++.+++.|.. .. ..+++.. ..+..+++.|+.+. .||+ +|..+.+|||+|+ +++||
T Consensus 384 ~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 384 SKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp SSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 67899999999999999988854 22 4556553 46888999999864 6777 8899999999998 78899
Q ss_pred EcCCCC
Q 011446 431 NFDFPK 436 (485)
Q Consensus 431 ~~~~p~ 436 (485)
.+++|-
T Consensus 458 i~~lPf 463 (540)
T 2vl7_A 458 LAGLPY 463 (540)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999983
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=6e-22 Score=187.83 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=125.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.|+++|.++++.++.+.+.++++|||+|||++++.++...+... ..++||++|+++|+.|+.+.+.++.......+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 79999999999999888899999999999999988877766532 2389999999999999999999987766677777
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
+.++..... ......+|+|+||+.+... ....+.++++||+||||++. ...+..++..+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCeEEEEeC
Confidence 777765432 2235689999999987543 22346788999999999986 3477788888877899999999
Q ss_pred ccchHH
Q 011446 302 TFPVTV 307 (485)
Q Consensus 302 Tl~~~~ 307 (485)
|++...
T Consensus 261 Tp~~~~ 266 (282)
T 1rif_A 261 SLRDGK 266 (282)
T ss_dssp SCCTTS
T ss_pred CCCCcc
Confidence 997543
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.83 E-value=1.2e-18 Score=180.30 Aligned_cols=129 Identities=18% Similarity=0.064 Sum_probs=98.9
Q ss_pred CCcHHHHHHHHH----HhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 142 RPSPIQEESIPI----ALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 142 ~~~~~Q~~~i~~----i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.++|+|.+.+.. +..++++++.+|||+|||++|++|++. .+.+++|++||++|+.|+.+.+..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 689999997764 447899999999999999999999997 2348999999999999999999888777777
Q ss_pred eEEEEECCCCh---------------------------------HHHH------------------HHhcCCCeEEEEcc
Q 011446 218 QVMVTTGGTSL---------------------------------KDDI------------------MRLYQPVHLLVGTP 246 (485)
Q Consensus 218 ~v~~~~g~~~~---------------------------------~~~~------------------~~~~~~~~Ili~Tp 246 (485)
++..+.|..+. .... +.....++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 88777663221 1111 22235789999999
Q ss_pred hHHHHhhhcCccc-cCCcceEEeeccccccC
Q 011446 247 GRILDLSKKGVCI-LKDCSMLVMDEADKLLS 276 (485)
Q Consensus 247 ~~l~~~~~~~~~~-l~~~~~iViDEah~~~~ 276 (485)
..|.+...+.... .....+|||||||.+.+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9998764443222 24678999999998753
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=7.3e-19 Score=161.66 Aligned_cols=138 Identities=22% Similarity=0.144 Sum_probs=109.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCce-E
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQ-V 219 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~-v 219 (485)
..++++|.++++.++.++++++++|||+|||++++.++... +.+++|++|+++|+.|+.+.+.++ +.. +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v 161 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYV 161 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGE
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeE
Confidence 37899999999999999899999999999999988777653 237999999999999988877763 566 7
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEE
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 299 (485)
..+.|+.. ...+|+|+|++.+...... ...++++|||||||++.+..+ ..++..++ ..+++++
T Consensus 162 ~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~~~~l~L 224 (237)
T 2fz4_A 162 GEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMSI-APFRLGL 224 (237)
T ss_dssp EEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTCC-CSEEEEE
T ss_pred EEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhcc-CCEEEEE
Confidence 77777654 3568999999998775542 134689999999999876553 44555554 6778999
Q ss_pred ecccch
Q 011446 300 SATFPV 305 (485)
Q Consensus 300 SATl~~ 305 (485)
|||++.
T Consensus 225 SATp~r 230 (237)
T 2fz4_A 225 TATFER 230 (237)
T ss_dssp EESCC-
T ss_pred ecCCCC
Confidence 999863
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.74 E-value=5.1e-17 Score=169.35 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=67.1
Q ss_pred CCcHHHHHHHH----HHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCc
Q 011446 142 RPSPIQEESIP----IALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNI 217 (485)
Q Consensus 142 ~~~~~Q~~~i~----~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~ 217 (485)
.|++.|.+.+. ++.+++++++.+|||+|||++|++|++..+... +.+++|++||++++.|+.+.+..+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 57999998876 455789999999999999999999999987653 348999999999999999999888776666
Q ss_pred eEEEEECC
Q 011446 218 QVMVTTGG 225 (485)
Q Consensus 218 ~v~~~~g~ 225 (485)
++..+.|.
T Consensus 81 ~~~~l~gr 88 (620)
T 4a15_A 81 RAIPMQGR 88 (620)
T ss_dssp CEEECCCH
T ss_pred EEEEEECC
Confidence 66655553
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.74 E-value=7e-18 Score=157.78 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=94.7
Q ss_pred ehhhhhHHHHHHHHHhc--CCCcEEEEecChhHHHHHHHHHHHc-CCeEEEEcCCCCHHHHHHHHHHHhcC-Ccc-EEEE
Q 011446 339 VEERQKVHCLNTLFSKL--QINQSIIFCNSVNRVELLAKKITEL-GYSCFYIHAKMLQDHRNRVFHDFRNG-ACR-NLVC 413 (485)
Q Consensus 339 ~~~~~~~~~l~~l~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~-~~~~~~~h~~~~~~~r~~i~~~f~~g-~~~-vlva 413 (485)
.....|...+..++... ...++||||++...++.+.+.|... ++.+..+||+++..+|..+++.|.+| ..+ +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888888888776 6679999999999999999999885 99999999999999999999999998 666 7889
Q ss_pred ccccccCCCCCCCCEEEEcCCCCChHHHHHHhhhccccCcccc
Q 011446 414 TDLFTRGIDIQAVNVVINFDFPKNSETYLHRVCWIQLSFSLSL 456 (485)
Q Consensus 414 T~~~~~Gidi~~v~~VI~~~~p~s~~~~~Qr~GRagR~g~~~~ 456 (485)
|+++++|+|++++++||+||+|+++..|.||+||++|.|+...
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~ 214 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRN 214 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------C
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCc
Confidence 9999999999999999999999999999999999999988654
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.91 E-value=6.1e-09 Score=108.43 Aligned_cols=146 Identities=21% Similarity=0.254 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchh--HHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 144 SPIQEESIPIALTGSDILARAKNGTGKT--AAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 144 ~~~Q~~~i~~i~~~~~~ii~~~TGsGKT--~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.+.|.++++.++.++.+++.|++|+||| +.++++.+..+.. ..+.++++++||..+|.++.+.+.......++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 6899999999999999999999999999 4556666654422 234589999999999998888776655444322100
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
. .... ..... -..++-.+|+.. . +.........+++||||||+.+ + ...+..++..++.+.|+|++.=
T Consensus 230 ~-~~~~--~~~~T---ih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 230 K-KRIP--EDAST---LHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp C-CSCS--CCCBT---TTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEEC
T ss_pred H-hccc--hhhhh---hHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcc
Confidence 0 0000 00000 001112222211 0 1111112237899999999944 3 5567888999998999888764
Q ss_pred c
Q 011446 302 T 302 (485)
Q Consensus 302 T 302 (485)
.
T Consensus 298 ~ 298 (608)
T 1w36_D 298 R 298 (608)
T ss_dssp T
T ss_pred h
Confidence 4
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.55 E-value=5.4e-06 Score=83.41 Aligned_cols=136 Identities=17% Similarity=0.203 Sum_probs=78.8
Q ss_pred HHcCCCCCcHHHHHHHHHHhcC----C-CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHH
Q 011446 136 FEKGFERPSPIQEESIPIALTG----S-DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 136 ~~~~~~~~~~~Q~~~i~~i~~~----~-~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
.-..|..+++-|.+++..++.. . .++|.|+.|||||+.. ..++..+...+. ..+++++||...+..+.+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~-- 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-TGIILAAPTHAAKKILSKLS-- 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-CCEEEEESSHHHHHHHHHHH--
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-ceEEEecCcHHHHHHHHhhh--
Confidence 3445788999999999977543 3 7999999999999864 344455544332 36899999988764443322
Q ss_pred HhccCCceEEEEECCCChHHHHHHh---cCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHH
Q 011446 211 LGKHLNIQVMVTTGGTSLKDDIMRL---YQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLI 287 (485)
Q Consensus 211 ~~~~~~~~v~~~~g~~~~~~~~~~~---~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~ 287 (485)
+..+..++ ...... ...... +. ......+..+++||+||++.+. ...+..++
T Consensus 95 -----~~~~~T~h------~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~ 149 (459)
T 3upu_A 95 -----GKEASTIH------SILKINPVTYEENVL-FE---------QKEVPDLAKCRVLICDEVSMYD----RKLFKILL 149 (459)
T ss_dssp -----SSCEEEHH------HHHTEEEEECSSCEE-EE---------ECSCCCCSSCSEEEESCGGGCC----HHHHHHHH
T ss_pred -----ccchhhHH------HHhccCcccccccch-hc---------ccccccccCCCEEEEECchhCC----HHHHHHHH
Confidence 11111111 000000 000000 00 0112335678999999999652 34556666
Q ss_pred HhCCCCCcEEEEe
Q 011446 288 RFLPANRQILMFS 300 (485)
Q Consensus 288 ~~~~~~~~~i~~S 300 (485)
..++...+++++.
T Consensus 150 ~~~~~~~~~~~vG 162 (459)
T 3upu_A 150 STIPPWCTIIGIG 162 (459)
T ss_dssp HHSCTTCEEEEEE
T ss_pred HhccCCCEEEEEC
Confidence 6666666665554
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.33 E-value=9.7e-07 Score=92.83 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHH
Q 011446 142 RPSPIQEESIPIALTGSD-ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~-~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
.+++-|.+|+..++..++ .||.||+|||||.+..-.+...+.. +.++|+++||...+..+.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHh
Confidence 478999999999988775 7899999999998855444444433 34899999999998877776654
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.32 E-value=3.4e-06 Score=86.88 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=79.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEE
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMV 221 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~ 221 (485)
.+++.|.+++..++.++.++|.|++|+|||+... .++..+... +.++++++||...+..+.+.. +....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~-------~~~a~- 257 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL--GLEVGLCAPTGKAARRLGEVT-------GRTAS- 257 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT--TCCEEEEESSHHHHHHHHHHH-------TSCEE-
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc--CCeEEEecCcHHHHHHhHhhh-------cccHH-
Confidence 5789999999999998899999999999998733 334444332 347899999998875544322 11111
Q ss_pred EECCCChHHHHHHhcCCCeEEEEcchHHHHh----hhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEE
Q 011446 222 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDL----SKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQIL 297 (485)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~----~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i 297 (485)
|..+++.. +.........+++||||||+.+. ...+..++..++...++|
T Consensus 258 -----------------------Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 258 -----------------------TVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVL 310 (574)
T ss_dssp -----------------------EHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEE
T ss_pred -----------------------HHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEE
Confidence 11111100 11112223467999999999752 446677778888777777
Q ss_pred EEec
Q 011446 298 MFSA 301 (485)
Q Consensus 298 ~~SA 301 (485)
++.=
T Consensus 311 lvGD 314 (574)
T 3e1s_A 311 LVGD 314 (574)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6543
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.23 E-value=1.4e-05 Score=83.52 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=52.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHH
Q 011446 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
+..+++.|.+++..++.+..++|.||+|+|||.+..- ++..+... .+.++++++||...+.++.+.+.+
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 4468899999999998877799999999999987443 33333321 334899999999998777776654
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1e-05 Score=86.58 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
..+++.|.+|+..++.+..++|.||+|+|||.+..-.+ ..+... .+.++++++||...+..+.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999887779999999999998754333 333221 2248999999999988887776654
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.09 E-value=0.00018 Score=75.71 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCcHHHHHHHHHHHHHHh
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELG 212 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~ 212 (485)
..+++-|.+++.. ....++|.|+.|||||.+.+--+...+...+ ...+++++++|+..+..+.+.+.++.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999983 3567999999999999985544444443322 33489999999999998888777764
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.08 E-value=3.4e-05 Score=82.41 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=51.9
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHH
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
..+++.|.+++..++.+...+|.||+|+|||++..- ++..+... .+.++++++||...+.++.+.+.+
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 357899999999998877799999999999987443 33344332 234899999999988777766554
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.51 E-value=0.00043 Score=64.81 Aligned_cols=109 Identities=11% Similarity=0.106 Sum_probs=81.7
Q ss_pred ehhhhhHHHHHHHHHhcC--CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 011446 339 VEERQKVHCLNTLFSKLQ--INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 416 (485)
Q Consensus 339 ~~~~~~~~~l~~l~~~~~--~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~ 416 (485)
+....|+.+|..++.... ..++|||++.....+.+.++|...++....+.|.....+ .+. .++...|.+.|..
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsa 179 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSE 179 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECC
Confidence 456778888888887764 349999999999999999999999999999999855432 221 2455666666776
Q ss_pred cccCCC-----CCCCCEEEEcCCCCChHHH-HHHhhhccccC
Q 011446 417 FTRGID-----IQAVNVVINFDFPKNSETY-LHRVCWIQLSF 452 (485)
Q Consensus 417 ~~~Gid-----i~~v~~VI~~~~p~s~~~~-~Qr~GRagR~g 452 (485)
.+-|++ ....+.||.||.-+++.+= +|.+-|+.|.|
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~ 221 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRER 221 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhc
Confidence 666775 6789999999999998875 99998888874
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.51 E-value=0.0011 Score=64.11 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=56.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccC
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHL 215 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~ 215 (485)
.++|+|...+..+...+-+++..+-+.|||......++..+... .+..++++.|+..-|..+.+.+..+....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 68999999998876556689999999999998766655443332 34489999999999888887777766543
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.38 E-value=0.00044 Score=59.99 Aligned_cols=39 Identities=15% Similarity=0.013 Sum_probs=26.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
++-.++.|++|+|||+.++-.+...... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc
Confidence 4557899999999999854444433322 23788888873
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.25 E-value=0.0011 Score=64.95 Aligned_cols=107 Identities=21% Similarity=0.176 Sum_probs=62.1
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcCC
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQP 238 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 238 (485)
-.++.|+.|||||.. +...+.. ...+|++||++++..+.+.+.+. +. . ..
T Consensus 163 v~~I~G~aGsGKTt~----I~~~~~~----~~~lVlTpT~~aa~~l~~kl~~~----~~--------~----------~~ 212 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKE----ILSRVNF----EEDLILVPGRQAAEMIRRRANAS----GI--------I----------VA 212 (446)
T ss_dssp EEEEEECTTSCHHHH----HHHHCCT----TTCEEEESCHHHHHHHHHHHTTT----SC--------C----------CC
T ss_pred EEEEEcCCCCCHHHH----HHHHhcc----CCeEEEeCCHHHHHHHHHHhhhc----Cc--------c----------cc
Confidence 378999999999997 3333321 25699999999986665544321 10 0 01
Q ss_pred CeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecc
Q 011446 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 239 ~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 302 (485)
...-+.|.+.++.... ....-.+++||||||-.+ . ...+..++...+. .++|++.=+
T Consensus 213 ~~~~V~T~dsfL~~~~--~~~~~~~d~liiDE~sm~-~---~~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 213 TKDNVRTVDSFLMNYG--KGARCQFKRLFIDEGLML-H---TGCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CTTTEEEHHHHHHTTT--SSCCCCCSEEEEETGGGS-C---HHHHHHHHHHTTC-SEEEEEECT
T ss_pred ccceEEEeHHhhcCCC--CCCCCcCCEEEEeCcccC-C---HHHHHHHHHhCCC-CEEEEecCc
Confidence 1122777777643211 111124799999999854 2 2334444555544 566666544
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.20 E-value=0.0042 Score=64.31 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCC
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLN 216 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~ 216 (485)
.++|+|...+..+-..+.+++..+-|+|||.+....++..+...+ +..++++.|+...|..+.+.++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 479999999988755677999999999999987655554444333 44899999999999888888887776553
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.19 E-value=0.00061 Score=59.34 Aligned_cols=39 Identities=10% Similarity=-0.001 Sum_probs=27.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
++-.++.|++|+|||+.++-.+..... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc
Confidence 344788999999999986554444432 234788888873
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.15 E-value=0.001 Score=57.30 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.++.+++.||+|+|||+.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35779999999999998754
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.15 E-value=0.00076 Score=60.20 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=50.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 236 (485)
+.-+++.|++|+|||+.++..+...... +.+++++.|...- +....+....++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~-----r~~~~i~srlG~~~----------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDT-----RSIRNIQSRTGTSL----------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCG-----GGCSSCCCCCCCSS-----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCc-----hHHHHHHHhcCCCc-----------------
Confidence 3448889999999999865555444332 3377888776421 00001122222110
Q ss_pred CCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccc
Q 011446 237 QPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKL 274 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~ 274 (485)
..+.+.+...++..+.... .-.++++|||||++.+
T Consensus 67 --~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFF 101 (223)
T ss_dssp --CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGS
T ss_pred --cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccC
Confidence 1223455556666555422 1345899999999974
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.03 E-value=0.00092 Score=58.81 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=26.9
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
-.++.|++|+|||+.++-.+..+... +.+++++.|...
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d 67 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCID 67 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccC
Confidence 36789999999999866655555443 337899998754
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0054 Score=57.79 Aligned_cols=24 Identities=4% Similarity=0.028 Sum_probs=18.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhh
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKI 182 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l 182 (485)
.++++.||+|+|||++.-. ++..+
T Consensus 46 ~~lli~GpPGTGKT~~v~~-v~~~L 69 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVND-VMDEL 69 (318)
T ss_dssp CEEEEECCCSHHHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 5699999999999987433 44444
No 112
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.78 E-value=0.0061 Score=54.12 Aligned_cols=40 Identities=8% Similarity=0.009 Sum_probs=28.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
++-.++.|++|+|||+.++--+..+.. .+.+++++.|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEeecCC
Confidence 445788999999999986665555543 3347888888753
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.70 E-value=0.00077 Score=56.21 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=16.8
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.++.+++.||+|+|||+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56779999999999998643
No 114
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.65 E-value=0.0057 Score=50.52 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=17.4
Q ss_pred hcCCCEEEEccCCCchhHHhH
Q 011446 155 LTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~~ 175 (485)
..+.++++.||+|+|||+.+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 355679999999999998754
No 115
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.64 E-value=0.016 Score=51.11 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=25.1
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEecc
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 302 (485)
....+|||||+|.+.. .....+..++.....+..+|++|..
T Consensus 101 ~~~~vliiDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTA-DAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCH-HHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCH-HHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3567999999998643 2234455555555555655555443
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.59 E-value=0.0038 Score=54.76 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=26.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
|.-.++.|++|+|||+.++--+..+... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEeccC
Confidence 3457899999999998755444333322 347888988754
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.58 E-value=0.0074 Score=57.31 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.6
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||+.+-
T Consensus 38 ~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SSEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999998744
No 118
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.48 E-value=0.0043 Score=59.31 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=25.1
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEccCCCchhHHhHHH
Q 011446 143 PSPIQEESIPIAL----TGS---DILARAKNGTGKTAAFCIP 177 (485)
Q Consensus 143 ~~~~Q~~~i~~i~----~~~---~~ii~~~TGsGKT~~~~~~ 177 (485)
++|+|.+++..+. .++ .+++.||.|+|||..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~l 44 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL 44 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHH
Confidence 4677777766544 333 3899999999999875543
No 119
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.46 E-value=0.0034 Score=66.15 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=56.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCcHHHHHHHHHHHHHHhccC---Cc
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELGKHL---NI 217 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~~~~---~~ 217 (485)
.+++-|.+++... +..++|.|+.|||||.+.+--+...+...+ ...++++++.|+..+..+.+.+.+..... ++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 4789999999853 567999999999999985544444443322 34589999999999988888777664422 34
Q ss_pred eEEEEE
Q 011446 218 QVMVTT 223 (485)
Q Consensus 218 ~v~~~~ 223 (485)
.+..++
T Consensus 80 ~v~Tfh 85 (673)
T 1uaa_A 80 MISTFH 85 (673)
T ss_dssp EEEEHH
T ss_pred EEEeHH
Confidence 454433
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.46 E-value=0.0045 Score=55.67 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
++.+++.||+|+|||+.+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998743
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.45 E-value=0.016 Score=57.02 Aligned_cols=131 Identities=17% Similarity=0.217 Sum_probs=71.9
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 236 (485)
.++++|++|+|||+.....+.. +... +.+++++. +.+.-+ .+.+..++...++.+.....+..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~-l~~~--G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~d--------- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYF-YKKR--GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQN--------- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH-HHHT--TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSC---------
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHc--CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCC---------
Confidence 4788999999999976543332 2222 22555544 444443 23344444444544332211111
Q ss_pred CCCeEEEEcchHHH-HhhhcCccccCCcceEEeecccccc---CCCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHH
Q 011446 237 QPVHLLVGTPGRIL-DLSKKGVCILKDCSMLVMDEADKLL---SPEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKD 312 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~-~~~~~~~~~l~~~~~iViDEah~~~---~~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~ 312 (485)
|..+. ..+.. .....+++||||++-++. +..+...+..+.....++.-++.++|+...+....+.
T Consensus 164 ---------p~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~ 232 (433)
T 3kl4_A 164 ---------PIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS 232 (433)
T ss_dssp ---------HHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH
T ss_pred ---------HHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH
Confidence 11111 11111 112478999999998653 2335556666666667777788899987655555554
Q ss_pred Hhc
Q 011446 313 KYL 315 (485)
Q Consensus 313 ~~~ 315 (485)
.|.
T Consensus 233 ~f~ 235 (433)
T 3kl4_A 233 RFH 235 (433)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 122
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.42 E-value=0.0072 Score=62.41 Aligned_cols=112 Identities=21% Similarity=0.295 Sum_probs=73.9
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceE
Q 011446 142 RPSPIQEESIPIALTG--SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQV 219 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~--~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v 219 (485)
.++.-|.+++..+..- ...++.|+-|.|||.+.-+.+ ..+.. .++|++|+.+-+..+.+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~~-----~~~vtAP~~~a~~~l~~----~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIAG-----RAIVTAPAKASTDVLAQ----FAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSSS-----CEEEECSSCCSCHHHHH----HHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHHh-----CcEEECCCHHHHHHHHH----HhhC-----
Confidence 5788999999988863 348999999999997644433 33321 45889999887543333 3211
Q ss_pred EEEECCCChHHHHHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEE
Q 011446 220 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (485)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 299 (485)
.|-+..|+.+.. .....+++|||||=.+ -.+.+..++...+ .++|
T Consensus 240 --------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~~~----~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSRFP----RTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTTSS----EEEE
T ss_pred --------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhhCC----eEEE
Confidence 133556665432 1345899999999764 4666667766332 4778
Q ss_pred eccc
Q 011446 300 SATF 303 (485)
Q Consensus 300 SATl 303 (485)
|.|+
T Consensus 285 ~tTv 288 (671)
T 2zpa_A 285 TTTV 288 (671)
T ss_dssp EEEB
T ss_pred EecC
Confidence 8885
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.33 E-value=0.016 Score=54.84 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=25.2
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
....+|+|||+|.+........+..++...+.+..+|+.|-
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999987522334444555555445666665443
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.28 E-value=0.009 Score=57.96 Aligned_cols=19 Identities=42% Similarity=0.375 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
...+++.||+|+|||+.+.
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3569999999999998743
No 125
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.28 E-value=0.0082 Score=51.88 Aligned_cols=38 Identities=8% Similarity=-0.037 Sum_probs=26.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
++-.++.|++|||||+-.+-.+-.+... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 3458899999999998755444444333 2478888877
No 126
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.23 E-value=0.005 Score=50.73 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=16.8
Q ss_pred HhcCCCEEEEccCCCchhHH
Q 011446 154 ALTGSDILARAKNGTGKTAA 173 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~ 173 (485)
.....++++.||+|+|||+.
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34567799999999999975
No 127
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.21 E-value=0.012 Score=51.46 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.7
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999998744
No 128
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.11 E-value=0.009 Score=67.27 Aligned_cols=67 Identities=27% Similarity=0.304 Sum_probs=52.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC---CceEEEEEcCcHHHHHHHHHHHHH
Q 011446 142 RPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN---NVIQVVILVPTRELALQTSQVCKE 210 (485)
Q Consensus 142 ~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~---~~~~~lil~P~~~la~q~~~~~~~ 210 (485)
.+++-|.++|..- +++++|.|..|||||.+.+--+...+.... ...+++++++|+..+..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 6799999998864 778999999999999996655555555432 335899999999998888776655
No 129
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.10 E-value=0.012 Score=62.33 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHhhhhccC-CceEEEEEcCcHHHHHHHHHHHHHHh
Q 011446 141 ERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDN-NVIQVVILVPTRELALQTSQVCKELG 212 (485)
Q Consensus 141 ~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~-~~~~~lil~P~~~la~q~~~~~~~~~ 212 (485)
..+++-|.+++.. ....++|.|..|||||.+..--+...+...+ ...++|+++.|+..|..+.+.+.++.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999986 3567999999999999985544444443322 33489999999999988877776654
No 130
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.04 E-value=0.015 Score=57.72 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.6
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999998754
No 131
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.94 E-value=0.03 Score=51.50 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||+.+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 359999999999998754
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.84 E-value=0.012 Score=57.12 Aligned_cols=18 Identities=33% Similarity=0.130 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+.
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 459999999999998743
No 133
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.84 E-value=0.051 Score=46.24 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
...+++.||+|+|||+.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3569999999999998744
No 134
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.78 E-value=0.0083 Score=56.41 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
.++++.||+|+|||+.+-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 459999999999998753
No 135
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.064 Score=50.49 Aligned_cols=40 Identities=18% Similarity=0.391 Sum_probs=24.8
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
....+||+||+|.+.. .....+..++...+.+..+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~-~~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ-DAQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCH-HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCH-HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4568999999998742 223445555555555666555543
No 136
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.62 E-value=0.14 Score=50.33 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=69.7
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhc
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLY 236 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 236 (485)
.++++|++|+|||+...-.+. ++... +.+++++. |.+.-+ .+.+..++...++.+.....+.+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~~--G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~d--------- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQKR--GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKD--------- 166 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHTT--TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCC---------
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHHC--CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCC---------
Confidence 478899999999998554332 23332 23555554 555544 34444555555655433211111
Q ss_pred CCCeEEEEcchHHH-HhhhcCccccCCcceEEeeccccccCC-CCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHh
Q 011446 237 QPVHLLVGTPGRIL-DLSKKGVCILKDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKY 314 (485)
Q Consensus 237 ~~~~Ili~Tp~~l~-~~~~~~~~~l~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~ 314 (485)
|..+. ..+.. ..-..+++||||.+=+.... .....+..+.....++.-++.+.||...+....+..|
T Consensus 167 ---------p~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f 235 (443)
T 3dm5_A 167 ---------AIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAF 235 (443)
T ss_dssp ---------HHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred ---------HHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHH
Confidence 11111 11111 00124789999988654321 2333445555555666678888888765555555444
Q ss_pred c
Q 011446 315 L 315 (485)
Q Consensus 315 ~ 315 (485)
.
T Consensus 236 ~ 236 (443)
T 3dm5_A 236 K 236 (443)
T ss_dssp H
T ss_pred H
Confidence 3
No 137
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.58 E-value=0.21 Score=42.45 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||+.+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 569999999999998743
No 138
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.54 E-value=0.087 Score=50.05 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||+.+.
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 469999999999998743
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.48 E-value=0.029 Score=53.75 Aligned_cols=43 Identities=14% Similarity=0.334 Sum_probs=28.4
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEeccc
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSATF 303 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SATl 303 (485)
..+..++|+||+|. ++......+..++...+.+..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999998 45444556666677666666666666543
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.46 E-value=0.014 Score=56.73 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.9
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.||+|+|||+.+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998743
No 141
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.45 E-value=0.038 Score=51.10 Aligned_cols=56 Identities=23% Similarity=0.068 Sum_probs=31.4
Q ss_pred CCCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHH--hcCCCEEEEccCCCchhHHhH
Q 011446 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIA--LTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i--~~~~~~ii~~~TGsGKT~~~~ 175 (485)
+...|+++.-.+...+.+.+.-. .+ -...+.+... ...+.+++.||+|+|||+.+-
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE-LP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH-HH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH-HH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34457777766777776654210 00 0011111111 234569999999999998743
No 142
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.42 E-value=0.065 Score=46.29 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=73.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH-HHHHHHHHHHHHhccCCceEEEEECCCC----hHH-H
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE-LALQTSQVCKELGKHLNIQVMVTTGGTS----LKD-D 231 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~-la~q~~~~~~~~~~~~~~~v~~~~g~~~----~~~-~ 231 (485)
..+++..++|.|||++++--++..+..+ .+|+++.=.+. ....=...+..+ ++.+...--+.. ..+ +
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G---~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG---KNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT---CCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHHH
Confidence 3589999999999999888888777653 37777742221 000001122222 222222111111 000 0
Q ss_pred HHHhcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC--CHHHHHHHHHhCCCCCcEEEEecccchHHHH
Q 011446 232 IMRLYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE--FQPSVEQLIRFLPANRQILMFSATFPVTVKD 309 (485)
Q Consensus 232 ~~~~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~ 309 (485)
.... ...+....+ ...-..+++||+||+-..+..+ -...+..++...+...-+|+++--.|+.+.+
T Consensus 102 ~~~a-----------~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 102 TAAC-----------MAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHH-----------HHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHH-----------HHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 0000 111111111 1112579999999996543322 3455677788777788888887777877766
Q ss_pred HHH
Q 011446 310 FKD 312 (485)
Q Consensus 310 ~~~ 312 (485)
.++
T Consensus 170 ~AD 172 (196)
T 1g5t_A 170 LAD 172 (196)
T ss_dssp HCS
T ss_pred hCc
Confidence 544
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.37 E-value=0.021 Score=55.20 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
++.+++.||+|+|||+.+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999998743
No 144
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.29 E-value=0.028 Score=53.72 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=25.0
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
....+|++||+|.+.. .....+..++...+....+|+.+.
T Consensus 132 ~~~~vliiDE~~~l~~-~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTA-DAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCH-HHHHHHHHHHHhcCCCceEEEEeC
Confidence 3567999999998743 223445555665555566665543
No 145
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.19 E-value=0.042 Score=51.51 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=22.8
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
....+++||||||.|... -...+.+.+..-+++..+|+++
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEE
Confidence 456899999999987422 2233334444433444444444
No 146
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.17 E-value=0.094 Score=49.20 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=16.8
Q ss_pred CCCEEEEccCCCchhHHhHH
Q 011446 157 GSDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~ 176 (485)
++.+++.||+|+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46799999999999987543
No 147
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.16 E-value=0.074 Score=51.21 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.5
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.||+|+|||+.+.
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999998754
No 148
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.10 E-value=0.11 Score=49.51 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=25.2
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
....++|+||+|.+.. .....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEEe
Confidence 4578999999998743 23444555666655566655544
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.99 E-value=0.13 Score=45.62 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.||+|+|||+.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998743
No 150
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.62 E-value=0.2 Score=50.77 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=25.9
Q ss_pred CCcceEEeeccccccCCC--CHHHHHHHHHhCCCCCcEEEEeccc
Q 011446 261 KDCSMLVMDEADKLLSPE--FQPSVEQLIRFLPANRQILMFSATF 303 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~i~~SATl 303 (485)
....+|+|||+|.+.... ....+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345789999999886533 22344444444 345577777764
No 151
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.51 E-value=0.091 Score=51.10 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
.+.+++.||+|+|||+.+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999998743
No 152
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.37 E-value=0.16 Score=53.93 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=64.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-cccCCCCCCCCEEE
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-FTRGIDIQAVNVVI 430 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~~~Gidi~~v~~VI 430 (485)
..+++|.+|++.-+.+.++.+.+. ++.+..+||+++..++..+++...+|..+|+|+|.. +...+.+.++.+||
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 468999999999999988888764 789999999999999999999999999999999984 34567888888887
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.34 E-value=0.17 Score=45.31 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=24.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
.|.-+++.|++|+|||+.+...+...... +..++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEE
Confidence 34668999999999998855444444332 22566665
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.26 E-value=0.07 Score=50.13 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=23.7
Q ss_pred CcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 262 DCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 262 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
+..+|||||+|.+... ....+..++...+.+..+|+.|.
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEeC
Confidence 3689999999987432 22334445555555566666553
No 155
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.03 E-value=0.07 Score=50.45 Aligned_cols=51 Identities=24% Similarity=0.196 Sum_probs=30.0
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCCEEEEccCCCchhHHhH
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIAL-----TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-----~~~~~ii~~~TGsGKT~~~~ 175 (485)
...|.++.-.....+.+.+.-. .|. ..+.+. ..+.+++.||+|+|||+.+-
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 3457777767777777664210 000 001111 12459999999999998743
No 156
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.99 E-value=0.23 Score=43.95 Aligned_cols=23 Identities=30% Similarity=0.128 Sum_probs=17.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q 011446 156 TGSDILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~ 178 (485)
.|..+++.||+|+|||+.+...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 35668999999999998754433
No 157
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.95 E-value=0.074 Score=50.27 Aligned_cols=18 Identities=33% Similarity=0.268 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 569999999999998743
No 158
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.91 E-value=0.59 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.1
Q ss_pred HHhcCCCEEEEccCCCchhHHhH
Q 011446 153 IALTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 153 ~i~~~~~~ii~~~TGsGKT~~~~ 175 (485)
.+..+..+++.||+|+|||+.+-
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHH
Confidence 45567889999999999998754
No 159
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.91 E-value=0.29 Score=45.54 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=57.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR 234 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 234 (485)
++.++++|++|+|||+.....+.......+ .+++++. +.+..+. +.+..++...++.+.. .
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~---eqL~~~~~~~gl~~~~---~--------- 167 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAV---EQLKTYAELLQAPLEV---C--------- 167 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHH---HHHHHHHTTTTCCCCB---C---------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHH---HHHHHHHHhcCCCeEe---c---------
Confidence 456889999999999875543332221122 2444443 4343332 2333333333332210 0
Q ss_pred hcCCCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCCCHHHHHHHHHhCC---CCCcEEEEecccc
Q 011446 235 LYQPVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLP---ANRQILMFSATFP 304 (485)
Q Consensus 235 ~~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~---~~~~~i~~SATl~ 304 (485)
.++..+...+.. +.++++||+|.+-+. ..-...+..+...+. ++..++++.||..
T Consensus 168 ---------~~~~~l~~al~~----~~~~dlvIiDT~G~~--~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 168 ---------YTKEEFQQAKEL----FSEYDHVFVDTAGRN--FKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp ---------SSHHHHHHHHHH----GGGSSEEEEECCCCC--TTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred ---------CCHHHHHHHHHH----hcCCCEEEEeCCCCC--hhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 012233333332 357899999966543 122334444444443 2333677767754
No 160
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.78 E-value=0.083 Score=51.60 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.6
Q ss_pred CCEEE--EccCCCchhHHhH
Q 011446 158 SDILA--RAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii--~~~TGsGKT~~~~ 175 (485)
..++| .|+.|+|||+.+.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 34788 8999999998743
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.69 E-value=0.042 Score=51.57 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
++++.||+|+|||+.+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999998743
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.45 E-value=0.095 Score=51.96 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||+.+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 359999999999998744
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.42 E-value=0.22 Score=46.82 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||+.+.
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999998743
No 164
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.37 E-value=0.13 Score=49.26 Aligned_cols=18 Identities=39% Similarity=0.338 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999998743
No 165
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.16 E-value=0.15 Score=50.60 Aligned_cols=55 Identities=18% Similarity=0.036 Sum_probs=30.1
Q ss_pred CCCcccccCCCHHHHHHHHHcCCCCCcHHHH-HHHH-HHhcCCCEEEEccCCCchhHHhH
Q 011446 118 KGNEFEDYFLKRELLMGIFEKGFERPSPIQE-ESIP-IALTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 118 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~-~~i~-~i~~~~~~ii~~~TGsGKT~~~~ 175 (485)
+...|.++.-.....+.+.+.-. .|... +.+. .....+.+++.||+|+|||+.+-
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHHH
Confidence 34567777666666666654210 00000 0000 01123569999999999998743
No 166
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.92 E-value=0.4 Score=46.81 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=63.7
Q ss_pred CCCcEEEEecChhHHHHHHHHHHH---cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccc----cCCCCCCCCE
Q 011446 356 QINQSIIFCNSVNRVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT----RGIDIQAVNV 428 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~----~Gidi~~v~~ 428 (485)
...++||.+|++..+.++++.+.. .++.+..+||+.+..++...++.+..|...|+|+|.-.- .-++..++.+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 456899999999999999999998 478999999999998888888899999899999998321 1255667888
Q ss_pred EEE
Q 011446 429 VIN 431 (485)
Q Consensus 429 VI~ 431 (485)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 167
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.78 E-value=0.37 Score=44.77 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=26.0
Q ss_pred CCcceEEeeccccccCC-CCHHHHHHHHHhCCCCCcEEEEecccchHHHH
Q 011446 261 KDCSMLVMDEADKLLSP-EFQPSVEQLIRFLPANRQILMFSATFPVTVKD 309 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~ 309 (485)
.++++||+||.-.+... .....+..+...+.++.-++.+.++...+...
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~ 228 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS 228 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHH
Confidence 46899999999544221 12233334444444444455566664433333
No 168
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.72 E-value=0.29 Score=49.05 Aligned_cols=18 Identities=39% Similarity=0.349 Sum_probs=15.5
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+-
T Consensus 239 ~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CcEEEECcCCCCHHHHHH
Confidence 569999999999998743
No 169
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.62 E-value=0.9 Score=42.34 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhHH
Q 011446 158 SDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (485)
+.+++.|++|+|||+....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 3478899999999987543
No 170
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.94 E-value=0.96 Score=42.59 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=34.8
Q ss_pred CcceEEeeccccccC-CCCHHHHHHHHHhCCCCCcEEEEecccchHHHHHHHHhc
Q 011446 262 DCSMLVMDEADKLLS-PEFQPSVEQLIRFLPANRQILMFSATFPVTVKDFKDKYL 315 (485)
Q Consensus 262 ~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SATl~~~~~~~~~~~~ 315 (485)
.++++++|.+-+... ......+..+...+.++..++.+.+|...++.+.+..+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 457888998876432 334455555556666777788888887666666555543
No 171
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.78 E-value=0.78 Score=40.76 Aligned_cols=25 Identities=32% Similarity=0.145 Sum_probs=19.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHh
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALE 180 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~ 180 (485)
.+.-+++.||+|+|||+.+...+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3456899999999999886554443
No 172
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.61 E-value=0.4 Score=47.62 Aligned_cols=37 Identities=24% Similarity=0.146 Sum_probs=24.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
|.-++|.|++|+|||+.++..+....... +..++++.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 45589999999999987655554443322 22567765
No 173
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.47 E-value=0.38 Score=44.21 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=19.9
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHH
Q 011446 154 ALTGSDILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~~~~~~l 179 (485)
+..|.-++|.|++|+|||+.+...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34567799999999999987655443
No 174
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.34 E-value=3.4 Score=38.76 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=24.0
Q ss_pred cceEEeeccccccC---CCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 263 CSMLVMDEADKLLS---PEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 263 ~~~iViDEah~~~~---~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
--+|||||+|.+.. ..+...+..+.... .+..+|+.+.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g~ 178 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGS 178 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEES
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEcC
Confidence 34899999998753 45666666666554 3455444443
No 175
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.96 E-value=0.29 Score=43.88 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHH
Q 011446 156 TGSDILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~ 178 (485)
.|.-+.+.||+|||||+.+...+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45669999999999998754433
No 176
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.96 E-value=0.91 Score=50.61 Aligned_cols=75 Identities=9% Similarity=0.138 Sum_probs=64.5
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc-ccccCCCCCCCCEEE
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-LFTRGIDIQAVNVVI 430 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~-~~~~Gidi~~v~~VI 430 (485)
...+++|.||+...+.+.++.+.+. ++.+..+++..+..++..+++....|..+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4458999999999999999888754 57889999999999999999999999999999996 455668888888877
No 177
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.79 E-value=0.27 Score=48.36 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=22.2
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
..++++|++|+|||+.+.-.+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 358899999999998765444333222 23556554
No 178
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=90.44 E-value=2.2 Score=38.17 Aligned_cols=72 Identities=10% Similarity=0.142 Sum_probs=54.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----cc--cCCCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FT--RGIDIQ 424 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~--~Gidi~ 424 (485)
...++||.+|+++.+.++++.+... ++.+..++|+.+...+...+ .+...|+|+|.- +. ..+++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3457999999999999999888765 78899999998766544332 246789999962 21 457788
Q ss_pred CCCEEEE
Q 011446 425 AVNVVIN 431 (485)
Q Consensus 425 ~v~~VI~ 431 (485)
++++||.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 8888773
No 179
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.43 E-value=0.58 Score=46.24 Aligned_cols=37 Identities=27% Similarity=0.142 Sum_probs=24.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
|.-++|.|++|+|||+.++..+....... +.+++++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~s 236 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYS 236 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEE
Confidence 34589999999999987665555444322 23567765
No 180
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.17 E-value=1.1 Score=37.29 Aligned_cols=73 Identities=16% Similarity=0.153 Sum_probs=50.6
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCCcc
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~ 264 (485)
.++||.|+++..+..+.+.+.+. ++.+..++|+.+..+....+ .....|+|+|.- +.. ..++..++
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~-Gld~~~~~ 105 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV-----AAR-GIDIENIS 105 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GTT-TCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----hhc-CCchhcCC
Confidence 37999999999987777776654 67888999987655433222 246789999942 222 44577788
Q ss_pred eEEeecc
Q 011446 265 MLVMDEA 271 (485)
Q Consensus 265 ~iViDEa 271 (485)
+||.-+.
T Consensus 106 ~Vi~~~~ 112 (163)
T 2hjv_A 106 LVINYDL 112 (163)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8876443
No 181
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.79 E-value=1.6 Score=38.08 Aligned_cols=71 Identities=7% Similarity=0.137 Sum_probs=54.6
Q ss_pred CcEEEEecChhHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----c-ccCCCCCCC
Q 011446 358 NQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F-TRGIDIQAV 426 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gidi~~v 426 (485)
.++||.||+++.+.++++.+.+. ++.+..++|+.+...+.. .+..+...|+|+|.- + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 38999999999999999988775 678999999988765543 344567799999962 1 234677888
Q ss_pred CEEEE
Q 011446 427 NVVIN 431 (485)
Q Consensus 427 ~~VI~ 431 (485)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88773
No 182
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.70 E-value=0.48 Score=45.25 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHHh
Q 011446 157 GSDILARAKNGTGKTAAF 174 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (485)
+..++|.||||||||+..
T Consensus 123 ~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345899999999999873
No 183
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.68 E-value=1.1 Score=48.31 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHhHH
Q 011446 158 SDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (485)
++++++||+|+|||+.+-.
T Consensus 192 ~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CCCEEEECTTSCHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 4699999999999987543
No 184
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.34 E-value=0.57 Score=54.50 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=27.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
++.+++.||+|+|||+.+...+.+.... +.+++++..-
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 1464 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcc
Confidence 5789999999999999876555544432 3467777754
No 185
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.31 E-value=2.2 Score=41.71 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=23.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELA 201 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la 201 (485)
+.+.++++.|+|||+.....+... ... +.+++++. +.+..+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l-~~~--g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYY-KGK--GRRPLLVAADTQRPAA 141 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-HTT--TCCEEEEECCSSCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEeeccccCchh
Confidence 447778999999998755433322 222 23555544 444444
No 186
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.26 E-value=1 Score=47.92 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.8
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998754
No 187
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.95 E-value=1.5 Score=42.42 Aligned_cols=40 Identities=15% Similarity=-0.041 Sum_probs=25.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhc---cCCceEEEEEcC
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQ---DNNVIQVVILVP 196 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~P 196 (485)
+.-+.|.||+|+|||+.....++..... .+.+..++++.-
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 3558999999999998765444333321 112346777753
No 188
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=88.72 E-value=1.3 Score=45.39 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=54.7
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHH--hcCCccEEEEcc
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDF--RNGACRNLVCTD 415 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f--~~g~~~vlvaT~ 415 (485)
..+.+||.+|++..+....+.|.+.++.+..++|+++..++..+...+ ..+..+||++|.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 357899999999999999999999999999999999999998888887 568899999998
No 189
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.48 E-value=2.7 Score=35.18 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=50.4
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCCc
Q 011446 188 VIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDC 263 (485)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~~ 263 (485)
..++||.|+++..+..+...+.+ .+..+..++|+.+..+....+ ....+|+|+|.- +.. ..++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~~-Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CAR-GIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CCT-TTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----hhc-CCCcccC
Confidence 34899999999998777766654 467888999987765443222 246789999952 222 4457778
Q ss_pred ceEEeec
Q 011446 264 SMLVMDE 270 (485)
Q Consensus 264 ~~iViDE 270 (485)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888533
No 190
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=88.08 E-value=0.41 Score=40.50 Aligned_cols=55 Identities=7% Similarity=0.065 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCC--CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHH
Q 011446 145 PIQEESIPIALTGS--DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (485)
Q Consensus 145 ~~Q~~~i~~i~~~~--~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (485)
+-|..++..++... -.+|.+.-|++|+...+.-++....+ .|.++.+++|+....
T Consensus 37 ~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr~V~vLAp~~~s~ 93 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGREVQIIAADRRSQ 93 (189)
T ss_dssp HHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTCCEEEECSTTHHH
T ss_pred ccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCeEEEEEcCchHHH
Confidence 56888888887554 47889999999998854444333333 344899999997654
No 191
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=88.05 E-value=2.5 Score=39.08 Aligned_cols=21 Identities=33% Similarity=0.233 Sum_probs=15.8
Q ss_pred CCEEEEccCCCchhHHhHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~ 178 (485)
..+++.|++|+|||+.....+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347788999999998755433
No 192
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.04 E-value=0.57 Score=40.93 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=28.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhH
Q 011446 140 FERPSPIQEESIPIALTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 140 ~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~~ 175 (485)
+...+.-|..++..+..|..+.+.||.|||||+.+-
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 333344577788888888889999999999998753
No 193
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=88.03 E-value=2.7 Score=37.29 Aligned_cols=71 Identities=6% Similarity=0.055 Sum_probs=53.6
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc-----cc-ccCCCCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LF-TRGIDIQAV 426 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v 426 (485)
..++||.+|+++.+.++++.+... ++.+..++|+.+...+...+.. ...|+|+|. .+ ...+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 447999999999999988877664 7889999999887766554432 468999996 22 234678888
Q ss_pred CEEEE
Q 011446 427 NVVIN 431 (485)
Q Consensus 427 ~~VI~ 431 (485)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88873
No 194
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.99 E-value=1.5 Score=48.62 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=63.1
Q ss_pred CCCcEEEEecChhHHHHHHHHHHH---cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccc----cCCCCCCCCE
Q 011446 356 QINQSIIFCNSVNRVELLAKKITE---LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT----RGIDIQAVNV 428 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~---~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~----~Gidi~~v~~ 428 (485)
...++||.+|+++.+.++++.|.+ .++.+..+||+++..++...++.+..|...|||+|.-.- .-++..++.+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999998 467899999999988888888999999999999997321 1155678888
Q ss_pred EEE
Q 011446 429 VIN 431 (485)
Q Consensus 429 VI~ 431 (485)
||.
T Consensus 200 lVi 202 (1104)
T 4ddu_A 200 VFV 202 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 195
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=87.93 E-value=1.5 Score=38.67 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=52.4
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccc------ccCCCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF------TRGIDIQA 425 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~------~~Gidi~~ 425 (485)
..++||.+|+++.+.++++.+... ++.+..++|+.+...+...+ ....|+|+|.-- ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 458999999999999999998875 57788999998876654433 257899999831 23456777
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+++||
T Consensus 167 ~~~lV 171 (230)
T 2oxc_A 167 IRLFI 171 (230)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 87777
No 196
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.93 E-value=1.3 Score=44.86 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=55.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc
Q 011446 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD 415 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~ 415 (485)
.+.+||.+|++..+....+.|...++.+..+|+..+..++..++.....|..+|+++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999999999999999999999986
No 197
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.45 E-value=3.7 Score=33.95 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=49.8
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCCcc
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~ 264 (485)
.++||.|+++..+..+...+.+. +..+..++|+.+..+....+ .....|+|||.- +.. ..++..++
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~-G~d~~~~~ 100 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LAR-GIDVQQVS 100 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----GTT-TCCCCSCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----hhc-CCCcccCC
Confidence 48999999999987777776653 67788899987755443222 346789999942 222 44567788
Q ss_pred eEEeec
Q 011446 265 MLVMDE 270 (485)
Q Consensus 265 ~iViDE 270 (485)
+||.-+
T Consensus 101 ~Vi~~~ 106 (165)
T 1fuk_A 101 LVINYD 106 (165)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 877644
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.41 E-value=0.4 Score=45.39 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
|.-++|.|++|+|||+.++-.+..... .+..++|++
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fS 81 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFS 81 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEe
Confidence 345899999999999876655554443 233677776
No 199
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.37 E-value=0.94 Score=44.25 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHH
Q 011446 158 SDILARAKNGTGKTAA 173 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (485)
.-++|.||||||||+.
T Consensus 168 gii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTT 183 (418)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3488999999999986
No 200
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=87.13 E-value=4.8 Score=34.34 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=50.4
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCCcc
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~ 264 (485)
.++||.|+++..+..+.+.+... ++.+..++|+.+..+....+ .....|+|+|. . ... ..++..++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-~----~~~-Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-V----ASK-GLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-H----HHT-TCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-c----hhc-CCCcccCC
Confidence 37999999999988887777665 67888899987755433222 24678999993 2 222 44577788
Q ss_pred eEEeec
Q 011446 265 MLVMDE 270 (485)
Q Consensus 265 ~iViDE 270 (485)
+||.-+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887633
No 201
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.97 E-value=3.1 Score=36.24 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=50.1
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCCcc
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~ 264 (485)
.++||.|+++.-+..+.+.+.+. ++.+..++|+.+..+....+ ....+|+|||.- ... ..++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~~-Gidi~~v~ 101 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----AAR-GLDIPQVD 101 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----TTC-SSSCCCBS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----hhc-CCCCccCc
Confidence 38999999999988777777664 67888899988765543322 346789999952 232 45577888
Q ss_pred eEEe
Q 011446 265 MLVM 268 (485)
Q Consensus 265 ~iVi 268 (485)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 202
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.85 E-value=3.2 Score=34.72 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=50.7
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCCcc
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~ 264 (485)
.++||.|+++..+..+.+.+... ++.+..++|+....+....+ .....|+|||.- +.. ..++..++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~-Gldi~~~~ 101 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FGR-GMDIERVN 101 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CST-TCCGGGCS
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hhc-CcchhhCC
Confidence 48999999999987777776654 67888899987755433222 346789999952 222 44567788
Q ss_pred eEEeecc
Q 011446 265 MLVMDEA 271 (485)
Q Consensus 265 ~iViDEa 271 (485)
+||.-+.
T Consensus 102 ~Vi~~d~ 108 (172)
T 1t5i_A 102 IAFNYDM 108 (172)
T ss_dssp EEEESSC
T ss_pred EEEEECC
Confidence 8876443
No 203
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.53 E-value=0.46 Score=50.42 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHhcC
Q 011446 158 SDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQ 237 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 237 (485)
+.+++.||+|+|||+.+ +.++..++.....+.+..-....
T Consensus 239 ~GILL~GPPGTGKT~LA----------------------------------raiA~elg~~~~~v~~~~l~sk~------ 278 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA----------------------------------RAVANETGAFFFLINGPEIMSKL------ 278 (806)
T ss_dssp CEEEEECCTTSCHHHHH----------------------------------HHHHTTTTCEEEEEEHHHHHSSC------
T ss_pred CeEEEECCCCCCHHHHH----------------------------------HHHHHHhCCeEEEEEhHHhhccc------
Q ss_pred CCeEEEEcchHHHHhhhcCccccCCcceEEeeccccccCCC----------CHHHHHHHHHhCCCCCcEEEEecc
Q 011446 238 PVHLLVGTPGRILDLSKKGVCILKDCSMLVMDEADKLLSPE----------FQPSVEQLIRFLPANRQILMFSAT 302 (485)
Q Consensus 238 ~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~----------~~~~~~~i~~~~~~~~~~i~~SAT 302 (485)
++..+..++.+.. ...-..-.+|+|||+|.+.... ....+...+..+.....++++-||
T Consensus 279 -----~gese~~lr~lF~-~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 279 -----AGESESNLRKAFE-EAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp -----TTHHHHHHHHHHH-HHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred -----chHHHHHHHHHHH-HHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
No 204
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=86.47 E-value=2.2 Score=36.25 Aligned_cols=88 Identities=13% Similarity=0.085 Sum_probs=48.1
Q ss_pred CCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHH---HHh-cCCCeEE
Q 011446 167 GTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDI---MRL-YQPVHLL 242 (485)
Q Consensus 167 GsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~-~~~~~Il 242 (485)
.+.|-.. +.-++.. ...+.++||.|+++..+..+...+... ++.+..++|+.+..+.. ..+ .....|+
T Consensus 29 ~~~K~~~-L~~ll~~---~~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNA---TGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHHH-HHHHHHH---C-CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHHH-HHHHHHh---cCCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 3566544 3333332 223448999999999987777766653 67888888876543321 111 2467899
Q ss_pred EEcchHHHHhhhcCccccCCcceEEe
Q 011446 243 VGTPGRILDLSKKGVCILKDCSMLVM 268 (485)
Q Consensus 243 i~Tp~~l~~~~~~~~~~l~~~~~iVi 268 (485)
|+|. .+ .. ..++..+++||.
T Consensus 101 vaT~-~~----~~-Gldi~~~~~VI~ 120 (185)
T 2jgn_A 101 VATA-VA----AR-GLDISNVKHVIN 120 (185)
T ss_dssp EEEC------------CCCSBSEEEE
T ss_pred EEcC-hh----hc-CCCcccCCEEEE
Confidence 9994 22 22 344677787776
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.25 E-value=2.3 Score=45.35 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 011446 157 GSDILARAKNGTGKTAAF 174 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (485)
++.+++.||+|||||+.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEECSCTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456999999999999864
No 206
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.19 E-value=0.65 Score=46.73 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=21.7
Q ss_pred cHHHHHHHHH-HhcCCCEEEEccCCCchhHH
Q 011446 144 SPIQEESIPI-ALTGSDILARAKNGTGKTAA 173 (485)
Q Consensus 144 ~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~ 173 (485)
.+.....+.. +..+..+++.||||||||+.
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4444444443 34667899999999999986
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=86.10 E-value=5.4 Score=39.83 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=24.2
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELAL 202 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~ 202 (485)
.++++|++|+|||+.+.-.+.. +...+ .+++++. |.+..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~-l~~~G--~kVllVd~D~~r~aa~ 145 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYY-YQRKG--WKTCLICADTFRAGAF 145 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-HHHTT--CCEEEEEECCSSSHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHhCC--CeEEEEeccccchhHH
Confidence 4778899999999886544332 22222 2455554 4455443
No 208
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.97 E-value=0.4 Score=47.02 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=35.3
Q ss_pred ccCCCCcccccCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 011446 115 TATKGNEFEDYFLKRELLMGIFEKG---FERPSPIQEESIPIALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 115 ~~~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~ 174 (485)
...+...|.+.+-.++..+.+.+.= +..|--++...++ ..+.+++.||+|||||+.+
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 3456667999988888887776521 1111112211111 2356999999999999863
No 209
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.00 E-value=2.2 Score=37.80 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=45.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc-----ccc-cCCCCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LFT-RGIDIQAV 426 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~~-~Gidi~~v 426 (485)
..++||.+|+++.+.++++.+... +..+..++|+..... ....+..+...|+|+|. .+. ..+++.++
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999999998875 467777888754332 23344567789999994 333 34667778
Q ss_pred CEEEE
Q 011446 427 NVVIN 431 (485)
Q Consensus 427 ~~VI~ 431 (485)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88773
No 210
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=84.96 E-value=0.46 Score=40.32 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.++-++++||+|||||+..-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45668999999999998643
No 211
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.77 E-value=4.1 Score=34.83 Aligned_cols=69 Identities=6% Similarity=0.073 Sum_probs=50.5
Q ss_pred CcEEEEecChhHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----cc-cCCCCCCC
Q 011446 358 NQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FT-RGIDIQAV 426 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~-~Gidi~~v 426 (485)
.++||.+|++..+.++++.+... +..+..++|+.+...... .+ .+...|+|+|.- +. ..+++.++
T Consensus 72 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 147 (206)
T 1vec_A 72 IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDHV 147 (206)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred eeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCcccC
Confidence 47999999999999999988764 567888999887654322 22 356789999972 22 23467788
Q ss_pred CEEE
Q 011446 427 NVVI 430 (485)
Q Consensus 427 ~~VI 430 (485)
++||
T Consensus 148 ~~lV 151 (206)
T 1vec_A 148 QMIV 151 (206)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 8877
No 212
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=84.33 E-value=3.6 Score=40.91 Aligned_cols=74 Identities=11% Similarity=0.049 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccccccCCCCCC
Q 011446 346 HCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQA 425 (485)
Q Consensus 346 ~~l~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~~~Gidi~~ 425 (485)
..+...++. ...+++|.|.+...++.+.+.|.+.++.+...... . .+..| .|.|+..-++.|+.+|+
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~~g--~v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EASDR--GRYLMIGAAEHGFVDTV 438 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCCTT--CEEEEESCCCSCEEETT
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcCCC--cEEEEEcccccCcccCC
Confidence 344444433 24689999999999999999999888765543221 1 11233 56677778899999998
Q ss_pred CCEEEEc
Q 011446 426 VNVVINF 432 (485)
Q Consensus 426 v~~VI~~ 432 (485)
..++|..
T Consensus 439 ~klaVIT 445 (483)
T 3hjh_A 439 RNLALIC 445 (483)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 8887753
No 213
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.14 E-value=0.63 Score=44.58 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.7
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q 011446 154 ALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~~ 174 (485)
+..|..++|+||||||||+.+
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 446788999999999999863
No 214
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=84.07 E-value=3.8 Score=39.08 Aligned_cols=72 Identities=8% Similarity=0.151 Sum_probs=55.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccc------ccCCCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF------TRGIDIQA 425 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~------~~Gidi~~ 425 (485)
..++||.||++..+.++++.+.+. ++.+..++|+.+....... +..+...|+|+|.-. ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 348999999999999999988875 6889999999887665443 345677899999621 23466778
Q ss_pred CCEEEE
Q 011446 426 VNVVIN 431 (485)
Q Consensus 426 v~~VI~ 431 (485)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888773
No 215
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=83.78 E-value=5 Score=34.27 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc-----cc-ccCCCCCCCCE
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL--GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LF-TRGIDIQAVNV 428 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~--~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v~~ 428 (485)
..++||.+|++..+..+++.+... .+.+..++|+.........+. ....|+|+|. .+ ...+++.++++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999999886 467888898876554433322 2468999996 12 23567778888
Q ss_pred EEE
Q 011446 429 VIN 431 (485)
Q Consensus 429 VI~ 431 (485)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 773
No 216
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.76 E-value=0.69 Score=45.55 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=29.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHH
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELA 201 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la 201 (485)
...+++|.|+||||||... ..++..+... +..++|+=|.-++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~--g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR--GDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT--TCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC--CCcEEEEeCCCchh
Confidence 3467999999999999974 3333333332 23677777887774
No 217
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.70 E-value=0.66 Score=44.63 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.+..++++||||||||+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556899999999999874
No 218
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=83.63 E-value=0.45 Score=43.29 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.5
Q ss_pred hcCCCEEEEccCCCchhHHh
Q 011446 155 LTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~ 174 (485)
..+..+++.||||||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35566899999999999864
No 219
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=83.54 E-value=5.7 Score=34.87 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=49.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----ccc--CCCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FTR--GIDIQA 425 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~~--Gidi~~ 425 (485)
..++||.+|+++.+..+++.+... ++.+..++|+.+.......+ +...|+|+|.- +.. .++..+
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 457999999999999999998876 37888899987654433322 45789999962 122 367778
Q ss_pred CCEEEE
Q 011446 426 VNVVIN 431 (485)
Q Consensus 426 v~~VI~ 431 (485)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888773
No 220
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.49 E-value=0.61 Score=40.27 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.++.+++.|++|||||+..-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 45679999999999999754
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.49 E-value=2.3 Score=39.19 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
...+++.||+|+|||+.+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998743
No 222
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.46 E-value=3.8 Score=35.85 Aligned_cols=72 Identities=4% Similarity=0.088 Sum_probs=49.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc---CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc------cccCCCCCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL---GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL------FTRGIDIQAV 426 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~------~~~Gidi~~v 426 (485)
...++||.+|+++.+.++++.+... ++.+..++|+.+...+... +. ....|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3457999999999999999999885 6788888888765543332 22 34789999961 2345678888
Q ss_pred CEEEE
Q 011446 427 NVVIN 431 (485)
Q Consensus 427 ~~VI~ 431 (485)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88773
No 223
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.43 E-value=0.7 Score=52.33 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=26.0
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
+++-+++|+|||=.-++..-...+...+.....++-+|..+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 44567889999876666555555666666665565555544
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=83.15 E-value=0.66 Score=40.08 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.++-+.++||+|+|||+..-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998743
No 225
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.03 E-value=0.59 Score=44.02 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.8
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.++|+||||+|||....
T Consensus 42 lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999998754
No 226
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=82.80 E-value=13 Score=37.62 Aligned_cols=87 Identities=11% Similarity=0.110 Sum_probs=59.2
Q ss_pred HHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhh
Q 011446 178 ALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLS 253 (485)
Q Consensus 178 ~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~ 253 (485)
+...+.....+.++||.|+++.-+..+++.+.+... .+..+..++|+....+....+ ....+|+|||.- +
T Consensus 329 l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~ 402 (563)
T 3i5x_A 329 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----G 402 (563)
T ss_dssp HHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----G
T ss_pred HHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-----h
Confidence 334444334455899999999999888888877643 257788899987765443222 257899999972 3
Q ss_pred hcCccccCCcceEEeecc
Q 011446 254 KKGVCILKDCSMLVMDEA 271 (485)
Q Consensus 254 ~~~~~~l~~~~~iViDEa 271 (485)
.. ..++.++++||.-..
T Consensus 403 ~~-GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 403 AR-GMDFPNVHEVLQIGV 419 (563)
T ss_dssp TS-SCCCTTCCEEEEESC
T ss_pred hc-CCCcccCCEEEEECC
Confidence 33 556778888876543
No 227
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.69 E-value=1.1 Score=43.39 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=33.5
Q ss_pred ccCCCCcccccCCCHHHHHHHHHcCCCCCcHHH-HHHHHH--HhcCCCEEEEccCCCchhHHh
Q 011446 115 TATKGNEFEDYFLKRELLMGIFEKGFERPSPIQ-EESIPI--ALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 115 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~--i~~~~~~ii~~~TGsGKT~~~ 174 (485)
...+.-.|.|.+=-++..+.+++.= ..|.. -+.+.. +...+.+++.||+|||||+.+
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v---~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVI---ELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHH---HHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 3445567888876677777776531 01111 111111 112367999999999999863
No 228
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=82.55 E-value=0.69 Score=40.29 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.++-+++.||+|+|||+..-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 34568899999999998743
No 229
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=82.24 E-value=6 Score=38.72 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=25.5
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc--CcHHHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV--PTRELALQ 203 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~--P~~~la~q 203 (485)
.++++|+.|+|||+...-.+.......+ .+++++. |.+..+..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G--~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHK--KKVLVVSADVYRPAAIK 146 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSC--CCEEEEECCCSSTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEEecCCCCccHHH
Confidence 4777899999999986544433322212 2555554 55555443
No 230
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.11 E-value=0.65 Score=43.87 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.2
Q ss_pred HhcCCCEEEEccCCCchhHH
Q 011446 154 ALTGSDILARAKNGTGKTAA 173 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~ 173 (485)
+..+..+.+.||||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34678899999999999985
No 231
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.08 E-value=0.9 Score=44.67 Aligned_cols=56 Identities=20% Similarity=0.108 Sum_probs=34.0
Q ss_pred cCCCCcccccCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hcCCCEEEEccCCCchhHHh
Q 011446 116 ATKGNEFEDYFLKRELLMGIFEKGFERPSPIQ-EESIPIA--LTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~i--~~~~~~ii~~~TGsGKT~~~ 174 (485)
..+.-.|.|.+--++..+.|++.=. .|.. .+.+..+ ...+.+|+.||+|+|||+.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 4455678888877777777765310 1111 1112111 12356999999999999863
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=81.98 E-value=0.75 Score=38.98 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCchhHHhHH
Q 011446 157 GSDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~ 176 (485)
.+.+++.|++|||||+..-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35689999999999997543
No 233
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=81.89 E-value=1 Score=40.10 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=24.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
|.-+++.|++|+|||..++..+.......+ ..++|++
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~--~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCceeec
Confidence 355899999999999876555554433322 2456665
No 234
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=81.79 E-value=0.65 Score=40.09 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHH
Q 011446 157 GSDILARAKNGTGKTAA 173 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~ 173 (485)
++-+++.||||+|||..
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45589999999999976
No 235
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.72 E-value=0.72 Score=42.96 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.4
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
-++|+||||||||..+.
T Consensus 5 ~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCcCCHHHHHH
Confidence 47889999999998744
No 236
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=81.64 E-value=2.2 Score=38.48 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.+..+++.||+|+|||+.+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 45679999999999998643
No 237
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.53 E-value=0.6 Score=38.94 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.4
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.|++|||||+..-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999754
No 238
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=81.53 E-value=0.73 Score=41.61 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=14.0
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
++|+|+||||||+.+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 7899999999998754
No 239
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.23 E-value=0.76 Score=42.68 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
-++|+||||||||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999998744
No 240
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=81.22 E-value=3.1 Score=50.15 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHH-HHH---HHHHhcCCCEEEEccCCCchhHHhHHHH--HhhhhccCCceEEEEEcCcH
Q 011446 127 LKRELLMGIFEKGFERPSPIQ-EES---IPIALTGSDILARAKNGTGKTAAFCIPA--LEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q-~~~---i~~i~~~~~~ii~~~TGsGKT~~~~~~~--l~~l~~~~~~~~~lil~P~~ 198 (485)
+...+.+.+.+.++. +.+.+ .++ ...+...+.++++||||||||+++-..+ +..+ .+....+.++-|..
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l--~~~~~~~~~inpk~ 964 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIF--DGHANVVYVIDTKV 964 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEEEECTTT
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHh--cCCCceEEEeCCCC
Confidence 334566666677764 45544 222 2344456779999999999999875433 2222 12233555566653
No 241
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.90 E-value=2.6 Score=36.73 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=45.5
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc------cccCCCCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL------FTRGIDIQAV 426 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~------~~~Gidi~~v 426 (485)
..++||.+|++..+.++++.+... ++.+..++|+.+...+... +. ..+|+|+|.- ....+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 458999999999999999988764 6778889988765443322 22 3789999962 1345667778
Q ss_pred CEEE
Q 011446 427 NVVI 430 (485)
Q Consensus 427 ~~VI 430 (485)
.+||
T Consensus 157 ~~iV 160 (224)
T 1qde_A 157 KMFI 160 (224)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 8877
No 242
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.85 E-value=2.5 Score=37.93 Aligned_cols=18 Identities=33% Similarity=0.326 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+-
T Consensus 46 ~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 459999999999998743
No 243
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.77 E-value=0.68 Score=43.05 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=29.7
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhH
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPI-ALTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~-i~~~~~~ii~~~TGsGKT~~~~ 175 (485)
...|.++.-.....+.+.+.- ..+..+....... +..++.+++.||+|+|||+.+-
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH-HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 345777766666666665420 0000000000010 1234569999999999998743
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=80.76 E-value=0.83 Score=39.40 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.|.-+.+.||+|||||+..-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45668899999999998743
No 245
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.75 E-value=0.76 Score=38.81 Aligned_cols=20 Identities=30% Similarity=0.227 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
..+.+++.|++|||||++.-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 45679999999999999754
No 246
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=80.73 E-value=1.7 Score=43.56 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=20.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhh
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKI 182 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l 182 (485)
.+.+++|.|+||||||++.-..++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999998544444333
No 247
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=80.68 E-value=2.5 Score=40.32 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
....+++.||+|+|||+.+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999998754
No 248
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=80.68 E-value=0.82 Score=39.62 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=17.1
Q ss_pred hcCCCEEEEccCCCchhHHhH
Q 011446 155 LTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~~ 175 (485)
..++-++++||+|||||+..-
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 355679999999999998743
No 249
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.60 E-value=0.92 Score=44.47 Aligned_cols=57 Identities=21% Similarity=0.114 Sum_probs=32.6
Q ss_pred ccCCCCcccccCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hcCCCEEEEccCCCchhHHh
Q 011446 115 TATKGNEFEDYFLKRELLMGIFEKGFERPSPIQ-EESIPIA--LTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 115 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~i--~~~~~~ii~~~TGsGKT~~~ 174 (485)
...+...|.+.+--++..+.+.+.= . .|.. .+.+..+ ...+.+++.||+|||||+.+
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v-~--~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVI-E--LPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred ccCCCCChhHhCChHHHHHHHHHHH-H--HHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 3355567888876666766665420 0 0000 0111111 12356999999999999863
No 250
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=80.58 E-value=19 Score=36.62 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=59.2
Q ss_pred HhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhh
Q 011446 179 LEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSK 254 (485)
Q Consensus 179 l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~ 254 (485)
...+.....+.++||.|+++..+..+++.+.+... .+..+..++|+....+....+ ....+|+|||.- +.
T Consensus 279 ~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~~ 352 (579)
T 3sqw_A 279 KKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----GA 352 (579)
T ss_dssp HHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----GT
T ss_pred HHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----hh
Confidence 33333334455899999999999888888877643 257788899987755433222 257889999972 33
Q ss_pred cCccccCCcceEEeeccc
Q 011446 255 KGVCILKDCSMLVMDEAD 272 (485)
Q Consensus 255 ~~~~~l~~~~~iViDEah 272 (485)
. ..++.++++||.-..-
T Consensus 353 ~-GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 353 R-GMDFPNVHEVLQIGVP 369 (579)
T ss_dssp S-SCCCTTCCEEEEESCC
T ss_pred c-CCCcccCCEEEEcCCC
Confidence 3 4557788988865543
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=80.45 E-value=0.94 Score=39.12 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.++-++++||+|+|||+..-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 45668999999999998643
No 252
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=80.42 E-value=0.92 Score=45.44 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCEEEEccCCCchhHHh
Q 011446 148 EESIPIALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 148 ~~~i~~i~~~~~~ii~~~TGsGKT~~~ 174 (485)
..++..+..+.++++.||+|+|||+.+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344556667889999999999999864
No 253
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=80.28 E-value=8.9 Score=34.42 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=52.1
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc------cc-ccCCCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD------LF-TRGIDIQA 425 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~------~~-~~Gidi~~ 425 (485)
..++||.+|+++.+.++++.+.+. +..+..++|+......... ...+ ..|+|+|. +. ..++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 457999999999999999998875 5677888888776554433 2334 78999994 22 23577888
Q ss_pred CCEEEE
Q 011446 426 VNVVIN 431 (485)
Q Consensus 426 v~~VI~ 431 (485)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888773
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=80.25 E-value=0.74 Score=38.70 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.|++|||||+..-
T Consensus 4 ~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999999743
No 255
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=80.25 E-value=0.88 Score=39.26 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.+.-+++.|++|||||+..-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45668999999999998743
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=80.17 E-value=0.65 Score=39.60 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.+..+++.|++|||||+.+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556899999999999864
No 257
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=80.13 E-value=6.7 Score=34.86 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=50.3
Q ss_pred CcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----c-ccCCCCCCCC
Q 011446 358 NQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F-TRGIDIQAVN 427 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gidi~~v~ 427 (485)
.++||.+|+++.+.++++.+... ++.+..++|+.+.......+ .....|+|+|.- + ...+++.++.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 48999999999999999888765 46778889887655443222 345789999972 1 2245777888
Q ss_pred EEE
Q 011446 428 VVI 430 (485)
Q Consensus 428 ~VI 430 (485)
+||
T Consensus 177 ~lV 179 (253)
T 1wrb_A 177 YIV 179 (253)
T ss_dssp EEE
T ss_pred EEE
Confidence 877
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.13 E-value=1.1 Score=38.26 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 011446 158 SDILARAKNGTGKTAAF 174 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (485)
+-+.+.||+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999864
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=80.04 E-value=1.1 Score=37.46 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+++.|+.|||||+..-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3568999999999998743
No 260
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=79.94 E-value=1.6 Score=42.25 Aligned_cols=42 Identities=31% Similarity=0.333 Sum_probs=28.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
.+.+++|.|+||+|||+..-..+..... .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCCcCH
Confidence 4567999999999999875544433332 23467777777654
No 261
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=79.87 E-value=1 Score=42.39 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=19.3
Q ss_pred HHHhcCCCEEEEccCCCchhHHhH
Q 011446 152 PIALTGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 152 ~~i~~~~~~ii~~~TGsGKT~~~~ 175 (485)
..+..+.++++.||+|+|||+.+-
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 345567899999999999998643
No 262
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=79.48 E-value=0.86 Score=39.74 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=22.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
|.-+++.|++|+|||+.+...+. . .+..++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEE
Confidence 45689999999999987554443 1 122566665
No 263
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.42 E-value=1.2 Score=43.41 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=33.5
Q ss_pred cccCCCCcccccCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 011446 114 VTATKGNEFEDYFLKRELLMGIFEK---GFERPSPIQEESIPIALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 114 ~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~ 174 (485)
....+...|.+.+=-++..+.+.+. -+..|--++...++ ..+.+++.||+|+|||+.+
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHH
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHH
Confidence 3445566788887666666666542 01111111111111 1356999999999999863
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=79.32 E-value=1.2 Score=39.22 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.4
Q ss_pred hcCCCEEEEccCCCchhHHh
Q 011446 155 LTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 155 ~~~~~~ii~~~TGsGKT~~~ 174 (485)
..|+-+.++||+|||||+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999864
No 265
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=78.99 E-value=0.72 Score=38.77 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.|.-+.+.||+|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34558899999999998744
No 266
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.97 E-value=1.1 Score=43.77 Aligned_cols=56 Identities=16% Similarity=0.026 Sum_probs=31.7
Q ss_pred cCCCCcccccCCCHHHHHHHHHcC---CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 011446 116 ATKGNEFEDYFLKRELLMGIFEKG---FERPSPIQEESIPIALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 116 ~~~~~~~~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i~~~~~~ii~~~TGsGKT~~~ 174 (485)
..+...|.|.+=-....+.+.+.= +..|--++... +...+.+++.||+|||||+.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 345567888876666666665420 00111111111 112355999999999999863
No 267
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.92 E-value=3.8 Score=50.10 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHH-HHHH---HHhcCCCEEEEccCCCchhHHhHHHH--HhhhhccCCceEEEEEcCcHHH
Q 011446 127 LKRELLMGIFEKGFERPSPIQE-ESIP---IALTGSDILARAKNGTGKTAAFCIPA--LEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 127 l~~~l~~~l~~~~~~~~~~~Q~-~~i~---~i~~~~~~ii~~~TGsGKT~~~~~~~--l~~l~~~~~~~~~lil~P~~~l 200 (485)
+...+.+.+.+.|+. +.+.+. +++. .+.-.+.++++||||||||+++-..+ +..+. +......++-|-..-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~--~~~~~~~~iNPKait 949 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVD--NIKSEAHVMDPKAIT 949 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTT--TCEEEEEEECTTTSC
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhh--CCCceEEEECCCCCc
Confidence 445566777777774 455443 3332 33344559999999999999975322 22221 223355566676544
Q ss_pred HHHHH
Q 011446 201 ALQTS 205 (485)
Q Consensus 201 a~q~~ 205 (485)
..+++
T Consensus 950 ~~eLy 954 (3245)
T 3vkg_A 950 KDQLF 954 (3245)
T ss_dssp HHHHH
T ss_pred hhhhc
Confidence 44433
No 268
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=78.72 E-value=0.89 Score=39.52 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=16.6
Q ss_pred HHhcCCCEEEEccCCCchhHHh
Q 011446 153 IALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 153 ~i~~~~~~ii~~~TGsGKT~~~ 174 (485)
.+..|.-+.+.||+|||||+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4556777999999999999864
No 269
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.62 E-value=1 Score=42.17 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.++|+||||||||+.+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998754
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=78.52 E-value=1.1 Score=37.24 Aligned_cols=17 Identities=12% Similarity=0.003 Sum_probs=14.5
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.|+.|||||++.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999999754
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=78.31 E-value=1 Score=38.53 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHH
Q 011446 158 SDILARAKNGTGKTAA 173 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~ 173 (485)
+-+||+||.|+|||+.
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999985
No 272
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=78.14 E-value=9.3 Score=37.27 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=52.1
Q ss_pred CcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----cc-cCCCCCCCC
Q 011446 358 NQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FT-RGIDIQAVN 427 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~-~Gidi~~v~ 427 (485)
.++||.+|+++.+.++++.+.+. ++.+..++|+.+...+...+ .....|+|+|.- +. ..+++.+++
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~ 205 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDTR 205 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTCC
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccCC
Confidence 48999999999999999988875 46788899998876554332 245789999962 22 245678888
Q ss_pred EEE
Q 011446 428 VVI 430 (485)
Q Consensus 428 ~VI 430 (485)
+||
T Consensus 206 ~lV 208 (434)
T 2db3_A 206 FVV 208 (434)
T ss_dssp EEE
T ss_pred eEE
Confidence 877
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=78.00 E-value=1.2 Score=37.78 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+++.|++|||||++.-
T Consensus 10 ~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4569999999999999754
No 274
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=77.93 E-value=28 Score=32.74 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.0
Q ss_pred CEEEEccCCCchhHHhHH
Q 011446 159 DILARAKNGTGKTAAFCI 176 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~ 176 (485)
.++++|++|+|||+.+.-
T Consensus 81 ~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488899999999987543
No 275
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.84 E-value=2.3 Score=40.40 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=15.6
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+.
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 569999999999998754
No 276
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=77.82 E-value=1.8 Score=40.43 Aligned_cols=37 Identities=27% Similarity=0.138 Sum_probs=25.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
.|.-++|.|++|+|||+.++..+....... ..+++++
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~s 103 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHS 103 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEE
Confidence 345599999999999987665555444322 3677776
No 277
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=77.78 E-value=0.73 Score=52.21 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=28.0
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEe
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFS 300 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 300 (485)
+++-+++|+||+=.-++..-...+...+..+..++-+|+.|
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 45678999999988777766666666666554454444443
No 278
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=77.71 E-value=2.9 Score=39.10 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=18.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHh
Q 011446 157 GSDILARAKNGTGKTAAFCIPALE 180 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~ 180 (485)
+.-++|.|++|+|||..++..+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999876655544
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=77.52 E-value=1.2 Score=37.28 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.0
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+++.|++|||||+.+-
T Consensus 5 I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEecCCCCCHHHHHH
Confidence 7899999999999743
No 280
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=77.44 E-value=7 Score=36.07 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=50.9
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCCc
Q 011446 188 VIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDC 263 (485)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~~ 263 (485)
+.++||.|+++.-+..+...+.+ .++.+..++|+....+....+ ....+|+|||.- ... ..++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a~~-Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----AAR-GLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----TTC-STTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----hhc-Cccccce
Confidence 34899999999987666665544 478889999987765543332 346789999952 233 4557788
Q ss_pred ceEEeecc
Q 011446 264 SMLVMDEA 271 (485)
Q Consensus 264 ~~iViDEa 271 (485)
++||.=+.
T Consensus 98 ~~VI~~d~ 105 (300)
T 3i32_A 98 DLVVHYRM 105 (300)
T ss_dssp SEEEESSC
T ss_pred eEEEEcCC
Confidence 88875333
No 281
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=77.26 E-value=2.5 Score=39.27 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
....+++.||+|+|||+.+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 34679999999999998743
No 282
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=77.11 E-value=3.3 Score=42.37 Aligned_cols=41 Identities=27% Similarity=0.467 Sum_probs=27.3
Q ss_pred cCCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEEec
Q 011446 260 LKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMFSA 301 (485)
Q Consensus 260 l~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 301 (485)
+.+-+++++||.-.-++......+...+..+..+. ++++.+
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~it 536 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVIA 536 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 45668999999987777666666777666665444 344433
No 283
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=76.82 E-value=1.3 Score=39.84 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+-
T Consensus 40 ~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998743
No 284
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.78 E-value=4.6 Score=38.59 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
...+++.||+|+|||+.+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999998754
No 285
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=76.75 E-value=1.7 Score=40.70 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHh
Q 011446 160 ILARAKNGTGKTAAF 174 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (485)
++|.|+.|||||+..
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 789999999999874
No 286
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.69 E-value=1.3 Score=41.87 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=15.0
Q ss_pred CEEEEccCCCchhHHhHH
Q 011446 159 DILARAKNGTGKTAAFCI 176 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~ 176 (485)
.++|+||||||||+.+..
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 488999999999987543
No 287
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=76.69 E-value=1.4 Score=37.96 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.+..+++.|+.|||||+.+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34568999999999998744
No 288
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=76.53 E-value=3.3 Score=38.80 Aligned_cols=41 Identities=12% Similarity=-0.061 Sum_probs=26.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhc---cCCceEEEEEcCc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQ---DNNVIQVVILVPT 197 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~P~ 197 (485)
+.-++|.|++|+|||+.+...+...... .+.+.+++++.--
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 3568999999999998765555443222 1113477777643
No 289
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.40 E-value=1.3 Score=40.81 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
.+.+++.||+|+|||+.+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999998743
No 290
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=76.33 E-value=1.7 Score=41.29 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.5
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..+++|-+ ++..|.||||||..
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 45667778876 78899999999987
No 291
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=76.23 E-value=1 Score=38.12 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+++.|+.|||||++.-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999999754
No 292
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.22 E-value=1.1 Score=40.37 Aligned_cols=53 Identities=17% Similarity=-0.033 Sum_probs=28.3
Q ss_pred CCcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEccCCCchhHHh
Q 011446 119 GNEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIAL--TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 119 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~ii~~~TGsGKT~~~ 174 (485)
...|+++.-.+.....+.+.-. ... ...++..+- -.+.+++.||+|+|||+.+
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3456776666666555544211 000 012222211 1234999999999999864
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=76.17 E-value=1.4 Score=37.23 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+++.|++|||||++.-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458999999999999754
No 294
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=75.90 E-value=1.7 Score=48.56 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=28.9
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHH
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRE 199 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~ 199 (485)
-+|.|..|||||.+.+--+...+.....+.+++++||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 4788999999999855544444444444468999999864
No 295
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.69 E-value=1.5 Score=38.23 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.6
Q ss_pred EEEEccCCCchhHHhHH
Q 011446 160 ILARAKNGTGKTAAFCI 176 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~ 176 (485)
+++.||+||||++++..
T Consensus 3 Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78899999999998654
No 296
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=75.55 E-value=1.5 Score=36.43 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.1
Q ss_pred CCEEEEccCCCchhHHhHH
Q 011446 158 SDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (485)
+++++.|+.|||||++.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5689999999999997553
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=75.50 E-value=1.6 Score=38.45 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=16.3
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q 011446 154 ALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~~ 174 (485)
+-.|.-++|.||.|+|||+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 345667899999999999864
No 298
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=75.41 E-value=12 Score=35.78 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=50.8
Q ss_pred CceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCC
Q 011446 187 NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKD 262 (485)
Q Consensus 187 ~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~ 262 (485)
.+.++||.|+++..+..+++.+.+. +..+..++|+....+....+ ....+|+|||. .+.. ..++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT-TSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc-CCCccc
Confidence 4458999999999987777776653 67888899988755443222 24678999996 2333 455777
Q ss_pred cceEEe
Q 011446 263 CSMLVM 268 (485)
Q Consensus 263 ~~~iVi 268 (485)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888775
No 299
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=75.33 E-value=1.9 Score=40.35 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=19.9
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceE
Confidence 34556677876 78899999999987
No 300
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=74.99 E-value=1.9 Score=38.79 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.5
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.+..+++.|++|||||+..-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 47889999999999999754
No 301
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=74.85 E-value=9.4 Score=36.27 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=51.7
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc------cccCCCCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL------FTRGIDIQA 425 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~------~~~Gidi~~ 425 (485)
...++||.||++..+.++++.+.+. ++.+..++|+.+.......+. ...|+|+|.- ....+...+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 3458999999999999999888764 678889999988766554443 3579999952 123455667
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+++||
T Consensus 163 ~~~vI 167 (394)
T 1fuu_A 163 IKMFI 167 (394)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77777
No 302
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.78 E-value=3.1 Score=42.08 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=27.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhc-cCCceEEEEEcCc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQ-DNNVIQVVILVPT 197 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~-~~~~~~~lil~P~ 197 (485)
..+++|.|.||||||.+.-..++..+.. .....+++++=|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4679999999999999865555554433 2233455555555
No 303
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=74.67 E-value=1.8 Score=36.78 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.+..+++.|+.|||||++.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 34568999999999999754
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=74.66 E-value=1.4 Score=36.84 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+++.|+.|||||+.+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 3458899999999998754
No 305
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=74.60 E-value=1.6 Score=38.32 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=15.7
Q ss_pred CCEEEEccCCCchhHHhHH
Q 011446 158 SDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (485)
+.+++.||+||||++++..
T Consensus 30 kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp EEEEEECCTTCCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4578899999999998654
No 306
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=74.59 E-value=1.5 Score=42.32 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.3
Q ss_pred EEEEccCCCchhHHhHH
Q 011446 160 ILARAKNGTGKTAAFCI 176 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~ 176 (485)
++|.||||+|||..+..
T Consensus 5 i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEECcchhhHHHHHHH
Confidence 78999999999987543
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=74.56 E-value=1.6 Score=37.55 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.|+.|||||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999999754
No 308
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=74.47 E-value=3.1 Score=34.81 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=17.4
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhcc
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQD 185 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~ 185 (485)
-+.+.|+.|||||+... -++..+...
T Consensus 6 ~i~i~G~sGsGKTTl~~-~L~~~l~~~ 31 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLME-KWVAAAVRE 31 (169)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHH-HHHHhhHhc
Confidence 37789999999998632 334444433
No 309
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=74.44 E-value=2.5 Score=40.13 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=24.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
++-++|.|++|+|||+.++..+...... +..++++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~ 96 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFID 96 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEE
Confidence 4568999999999998765544443332 23567765
No 310
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=74.43 E-value=1.3 Score=40.42 Aligned_cols=52 Identities=17% Similarity=-0.027 Sum_probs=28.3
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEccCCCchhHHh
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQEESIPIAL--TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~--~~~~~ii~~~TGsGKT~~~ 174 (485)
..|+++.-.++....+.+.-. ... ...++..+- -.+.+++.||+|+|||+.+
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~--~~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVE--FLK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHH--HHH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHH--HHH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456777666666666554211 000 011222111 1234999999999999864
No 311
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=74.38 E-value=3.1 Score=39.53 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=24.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT 197 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~ 197 (485)
+.-++|.||+|+|||+.+...+..... .+..++++..-
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecc
Confidence 456899999999999875443333222 22367777644
No 312
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=74.33 E-value=2 Score=40.62 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=19.7
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeE
Confidence 34556667776 78899999999987
No 313
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=74.29 E-value=9.7 Score=38.23 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----cccC-C-CCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FTRG-I-DIQA 425 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~~G-i-di~~ 425 (485)
..++||.+|++..+...++.+... ++.+..+||+.+...+...+. ....|+|+|.- +..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999999998888775 889999999986554432221 13679999873 2222 4 6778
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+++||
T Consensus 131 ~~~vV 135 (556)
T 4a2p_A 131 FTLMI 135 (556)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 88877
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=74.24 E-value=1.5 Score=37.79 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.+..+++.|+.|||||+.+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34558899999999998754
No 315
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=73.86 E-value=1.8 Score=38.17 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.|++|||||++.-
T Consensus 8 ~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458999999999999754
No 316
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=73.79 E-value=1.9 Score=36.02 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.8
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.|+.|||||+.+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58999999999998754
No 317
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=73.72 E-value=1.6 Score=40.22 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999998743
No 318
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=73.72 E-value=3.4 Score=40.81 Aligned_cols=18 Identities=39% Similarity=0.420 Sum_probs=15.6
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+-
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999998744
No 319
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=73.69 E-value=2.2 Score=40.73 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=19.9
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34556677876 78899999999987
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=73.55 E-value=1.4 Score=38.93 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=12.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.|.-+.+.||+|||||+..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999874
No 321
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=73.48 E-value=2.3 Score=40.30 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=19.6
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEE
Confidence 34455667776 78899999999987
No 322
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=73.33 E-value=2.3 Score=40.54 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=19.7
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceE
Confidence 34556667776 78899999999987
No 323
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=73.31 E-value=1.8 Score=36.72 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
.-+++.|+.|||||+..-
T Consensus 6 ~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 348899999999999754
No 324
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=73.29 E-value=2.3 Score=40.22 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=19.8
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 74 plv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 74 PLLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHhhcCeeEEEecccCCCceEe
Confidence 34556677876 78899999999987
No 325
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=73.23 E-value=7.5 Score=42.88 Aligned_cols=74 Identities=12% Similarity=0.246 Sum_probs=56.7
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CC----eEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-cccCC-CCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GY----SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-FTRGI-DIQA 425 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~----~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~~~Gi-di~~ 425 (485)
...++||.+|++..+.++++.+... ++ .+..+||+.+...+....+.+.. ..|+|+|.- +..-+ .+.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3458999999999999999988764 45 78999999998888777777766 899999972 11111 1557
Q ss_pred CCEEEE
Q 011446 426 VNVVIN 431 (485)
Q Consensus 426 v~~VI~ 431 (485)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888773
No 326
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=73.22 E-value=2.2 Score=40.46 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=19.6
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 71 plv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 71 PTVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCCcceEEEECCCCCCcceE
Confidence 34556667776 78899999999987
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.13 E-value=1.8 Score=37.62 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.5
Q ss_pred EEEEccCCCchhHHhHH
Q 011446 160 ILARAKNGTGKTAAFCI 176 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~ 176 (485)
+++.|+.|||||+++-.
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999997543
No 328
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=72.97 E-value=2.4 Score=40.18 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeE
Confidence 34556677876 78899999999987
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=72.95 E-value=1.9 Score=36.62 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.|++|||||+.+-
T Consensus 5 ~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999999754
No 330
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=72.94 E-value=2.4 Score=39.82 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=20.7
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 46667778877 78899999999987
No 331
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=72.93 E-value=2.4 Score=40.32 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.2
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
.++..++.|.+ ++..|.||||||..
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceE
Confidence 45666778877 77889999999987
No 332
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=72.92 E-value=2.3 Score=40.40 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=19.8
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 96 plv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 96 PILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHHhCCCceEEEEeCCCCCCceee
Confidence 34556667876 78899999999987
No 333
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=72.88 E-value=2.4 Score=40.28 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=20.2
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceE
Confidence 45566778877 78899999999987
No 334
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.85 E-value=15 Score=35.83 Aligned_cols=70 Identities=11% Similarity=0.213 Sum_probs=53.9
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc-CC---eEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-c-----ccCCCCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL-GY---SCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-F-----TRGIDIQA 425 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~-~~---~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~-----~~Gidi~~ 425 (485)
...++||.||++..+...++.+.+. +. .+..+||+.....+..... ...|+|+|.- + ...+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999999999999999876 55 8899999998877655443 3579999862 1 12456777
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+++||
T Consensus 126 ~~~vI 130 (494)
T 1wp9_A 126 VSLIV 130 (494)
T ss_dssp CSEEE
T ss_pred ceEEE
Confidence 88877
No 335
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=72.78 E-value=1.9 Score=36.52 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=14.1
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+++.|+.|||||+..-
T Consensus 4 I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999754
No 336
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=72.68 E-value=2.5 Score=40.01 Aligned_cols=48 Identities=13% Similarity=-0.080 Sum_probs=29.7
Q ss_pred HHHHHhc-----CCCEEEEccCCCchhHHhHHHHHhhhhcc---CCceEEEEEcCc
Q 011446 150 SIPIALT-----GSDILARAKNGTGKTAAFCIPALEKIDQD---NNVIQVVILVPT 197 (485)
Q Consensus 150 ~i~~i~~-----~~~~ii~~~TGsGKT~~~~~~~l~~l~~~---~~~~~~lil~P~ 197 (485)
.++.++. +.-++|.|++|+|||+.+...+....... +.+..++++.--
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 3555664 34589999999999987655554432211 123477777643
No 337
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=72.62 E-value=1.9 Score=36.53 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
-+++.||+|||||+.+-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 37889999999998643
No 338
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=72.59 E-value=3.7 Score=38.22 Aligned_cols=41 Identities=5% Similarity=-0.154 Sum_probs=27.6
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHH
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTREL 200 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~l 200 (485)
.++|.||+|+|||+..+..+...... +.+.+++++..-..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchh
Confidence 48899999999998866555544432 223478888754444
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=72.47 E-value=1.5 Score=40.43 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.4
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
-++++|++|||||+.+-
T Consensus 35 livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 38899999999998743
No 340
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=72.43 E-value=20 Score=33.87 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=53.6
Q ss_pred CceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCC
Q 011446 187 NVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKD 262 (485)
Q Consensus 187 ~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~ 262 (485)
...++||.|+++.-+..+++.+++. +..+..++|+.+..+....+ ....+|+|||.- +.. ..++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~-Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-----LAR-GIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-----GSS-SCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-----hhc-CCCccc
Confidence 3458999999999987777776654 67788899987755433222 246789999962 233 556778
Q ss_pred cceEEeecccc
Q 011446 263 CSMLVMDEADK 273 (485)
Q Consensus 263 ~~~iViDEah~ 273 (485)
+++||.-+...
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 89888755543
No 341
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=72.30 E-value=3 Score=39.64 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=25.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcC
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (485)
++.++|.|++|+|||+.++..+...... +.+++++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeC
Confidence 4568999999999998866555444332 225677764
No 342
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=72.24 E-value=4.8 Score=33.84 Aligned_cols=15 Identities=40% Similarity=0.342 Sum_probs=13.2
Q ss_pred CEEEEccCCCchhHH
Q 011446 159 DILARAKNGTGKTAA 173 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~ 173 (485)
-+++.|+.|||||+.
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478899999999986
No 343
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=72.21 E-value=2.5 Score=40.95 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.2
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHH
Q 011446 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 150 ~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
.+..++.|-+ ++..|.||||||..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 4555667766 78899999999987
No 344
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=72.06 E-value=2 Score=37.38 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=14.2
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+++.|+.|||||+++-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999754
No 345
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=72.02 E-value=2.2 Score=35.94 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
-.+|+||+|||||+.+-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 47899999999998743
No 346
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=71.95 E-value=2.8 Score=41.24 Aligned_cols=36 Identities=25% Similarity=0.074 Sum_probs=26.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
|.-++|.|++|+|||+.++..+...... +.++++++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEE
Confidence 3458999999999998866666555443 33778776
No 347
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=71.94 E-value=1.8 Score=37.17 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+++.|+.|||||++.-
T Consensus 4 ~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4558999999999999754
No 348
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=71.84 E-value=2.6 Score=40.21 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=19.8
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 34556677876 78899999999977
No 349
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=71.77 E-value=1.8 Score=37.51 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHHh
Q 011446 157 GSDILARAKNGTGKTAAF 174 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~ 174 (485)
+.-+.|.||+|||||+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 344789999999999864
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=71.72 E-value=2.1 Score=36.26 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.5
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.|+.|||||++.-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999754
No 351
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=71.67 E-value=2 Score=37.57 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+.+.|++|||||+.+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 348899999999999754
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=71.65 E-value=1 Score=39.05 Aligned_cols=20 Identities=20% Similarity=-0.017 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.+.-+.|.|++|||||+.+-
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34458899999999998643
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=71.64 E-value=2.5 Score=35.64 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.|++|||||+.+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348899999999999754
No 354
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=71.60 E-value=2.4 Score=40.33 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=20.1
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceE
Confidence 45556677876 78899999999987
No 355
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=74.12 E-value=0.81 Score=38.34 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=45.3
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCCc
Q 011446 188 VIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDC 263 (485)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~~ 263 (485)
+.++||.|+++..+..+.+.+.+. ++.+..++|+....+....+ .....|+|+|. .+ .. ..++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~----~~-Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA----AR-GIDIPDV 99 (170)
Confidence 348899999998887776666554 56777788876543332222 23567888884 22 22 3345667
Q ss_pred ceEEeec
Q 011446 264 SMLVMDE 270 (485)
Q Consensus 264 ~~iViDE 270 (485)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (170)
T 2yjt_D 100 SHVFNFD 106 (170)
Confidence 7766533
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=71.40 E-value=2.1 Score=37.49 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.|++|||||++.-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999999754
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=71.33 E-value=2.4 Score=35.19 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=14.8
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.|+.|||||++.-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CEEEESCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999999754
No 358
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=71.24 E-value=2.2 Score=40.20 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.4
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.||+|+|||+.+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 569999999999998743
No 359
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=71.24 E-value=6 Score=44.24 Aligned_cols=53 Identities=19% Similarity=0.148 Sum_probs=38.9
Q ss_pred CEEEEccCCCchhHHhHHHHHhhhhccC---------CceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 159 DILARAKNGTGKTAAFCIPALEKIDQDN---------NVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l~~~~---------~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
..+|.|..|||||.+...-++..+...+ ...++|+|+=|+..|..+.+.+.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4599999999999987666666665321 2347999999998888776655543
No 360
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=71.20 E-value=3.5 Score=38.26 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+.+.||+|||||+..-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3458889999999998644
No 361
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=71.18 E-value=2.2 Score=36.03 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 011446 159 DILARAKNGTGKTAAF 174 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (485)
.+.+.||.|||||+.+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999864
No 362
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=71.14 E-value=2.6 Score=40.33 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=19.9
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCccee
Confidence 44556677876 78899999999987
No 363
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=71.12 E-value=1.8 Score=37.52 Aligned_cols=43 Identities=12% Similarity=0.005 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC----CCEEEEccCCCchhHHh
Q 011446 130 ELLMGIFEKGFERPSPIQEESIPIALTG----SDILARAKNGTGKTAAF 174 (485)
Q Consensus 130 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~~----~~~ii~~~TGsGKT~~~ 174 (485)
.+.+-|+-.++ .+-.. ...+..++.+ +.+++.||+|+|||+.+
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 45555553333 22222 3344444444 24899999999999864
No 364
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=71.00 E-value=2.2 Score=36.39 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+++.|++|||||++.-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4558999999999999754
No 365
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=70.89 E-value=2.8 Score=39.71 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=20.7
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEe
Confidence 36667778877 78899999999987
No 366
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=70.84 E-value=2.2 Score=36.49 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=14.0
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+++.|++|||||+..-
T Consensus 3 I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 7899999999999744
No 367
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=70.78 E-value=3 Score=40.36 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=20.9
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 131 ~lv~~~l~G~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 131 QLVQSSLDGYNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp HHHHHHHTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHHHhCCcceEEEEECCCCCCCceE
Confidence 36677788877 78899999999987
No 368
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=70.73 E-value=2.4 Score=37.07 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.|++|||||++.-
T Consensus 5 ~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458999999999999754
No 369
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=70.61 E-value=2.6 Score=40.42 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=20.2
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHHh
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAAF 174 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~~ 174 (485)
..+..++.|.+ ++..|.||||||...
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 34556677776 788999999999873
No 370
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=70.60 E-value=1.5 Score=39.01 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.|.||.|||||+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999985
No 371
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=70.32 E-value=15 Score=35.14 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=51.0
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh----cCCCeEEEEcchHHHHhhhcCccccCCcc
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL----YQPVHLLVGTPGRILDLSKKGVCILKDCS 264 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~----~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~ 264 (485)
.++||.|+++.-+..+++.+.+. +..+..++|+....+....+ ....+|+|||.- +.. ..++.+++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~~-Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----CAR-GIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-----GTS-SCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-----ccc-CCCccCCC
Confidence 48999999999988777777654 67788899987755443322 346789999962 333 45577888
Q ss_pred eEEeec
Q 011446 265 MLVMDE 270 (485)
Q Consensus 265 ~iViDE 270 (485)
+||.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 887533
No 372
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.31 E-value=2.3 Score=36.47 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.7
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.|+.|||||+++-
T Consensus 22 ~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999999754
No 373
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=70.28 E-value=2.5 Score=40.02 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=20.9
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..+++|.+ ++..|.||||||..
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyT 102 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYT 102 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceE
Confidence 36777788877 77899999999987
No 374
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=70.27 E-value=23 Score=26.43 Aligned_cols=46 Identities=11% Similarity=0.296 Sum_probs=34.8
Q ss_pred EEEEecChhHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHhc
Q 011446 360 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRN 405 (485)
Q Consensus 360 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~i~~~f~~ 405 (485)
.+||....+....+...++..|..+..++++.....|.+-++.|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 3567777777777888888888888888888887777777777653
No 375
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=70.14 E-value=2.1 Score=37.20 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.+..+++.|++|||||+.+-
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45568899999999998754
No 376
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=70.06 E-value=1.4 Score=39.80 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
+.+++.||+|+|||+.+-
T Consensus 45 ~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp SCCCCBCSSCSSHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 459999999999998743
No 377
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=70.02 E-value=16 Score=34.77 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----c-ccCCCCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F-TRGIDIQAV 426 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gidi~~v 426 (485)
..++||.+|++..+..+++.+... ++.+..++|+......... ..+...|+|+|.- + ....++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCcccccC
Confidence 448999999999999999888765 6788889998775443221 2356789999952 2 234667788
Q ss_pred CEEE
Q 011446 427 NVVI 430 (485)
Q Consensus 427 ~~VI 430 (485)
.+||
T Consensus 165 ~~vI 168 (400)
T 1s2m_A 165 SLFI 168 (400)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 8877
No 378
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=69.92 E-value=3 Score=40.45 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=21.0
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|.+ ++..|.||||||..
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 46777888877 78899999999987
No 379
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=69.91 E-value=2.7 Score=34.30 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=13.4
Q ss_pred EEEEccCCCchhHHh
Q 011446 160 ILARAKNGTGKTAAF 174 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~ 174 (485)
.+|.||+|+|||..+
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999864
No 380
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=69.72 E-value=2.3 Score=40.48 Aligned_cols=19 Identities=37% Similarity=0.223 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
.+.+++.||+|+|||+.+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999998744
No 381
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=69.67 E-value=17 Score=38.53 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=53.6
Q ss_pred HhcCCCcEEEEecChhHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-c----------
Q 011446 353 SKLQINQSIIFCNSVNRVELLAKKITE----LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-F---------- 417 (485)
Q Consensus 353 ~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~---------- 417 (485)
.......++|.|+|+..|.+.++.+.. .|+.+.++.|+++...|.... ...|+++|+- +
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 444556899999999999988887765 489999999999987665432 2689999971 1
Q ss_pred --ccCCCCCCCCEEE
Q 011446 418 --TRGIDIQAVNVVI 430 (485)
Q Consensus 418 --~~Gidi~~v~~VI 430 (485)
...++...+.++|
T Consensus 194 ~~~~~l~lr~~~~lV 208 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAV 208 (844)
T ss_dssp SSGGGCCCCCCCEEE
T ss_pred cchhhhcccCCCEEE
Confidence 1235667788766
No 382
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=69.49 E-value=2.4 Score=36.80 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=14.2
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+++.|+.|||||++.-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999754
No 383
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=69.46 E-value=2.9 Score=35.73 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=26.4
Q ss_pred cCCcceEEeecccccc--CCCCHHHHHHHHHhCCCCCcEEEEecccc
Q 011446 260 LKDCSMLVMDEADKLL--SPEFQPSVEQLIRFLPANRQILMFSATFP 304 (485)
Q Consensus 260 l~~~~~iViDEah~~~--~~~~~~~~~~i~~~~~~~~~~i~~SATl~ 304 (485)
..+.+++|+||+..+- +..|...+..++.. ...+|+-|+|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 5678899999987663 33355566666553 233555567753
No 384
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=69.42 E-value=15 Score=38.79 Aligned_cols=72 Identities=10% Similarity=-0.046 Sum_probs=52.3
Q ss_pred HhcCCCcEEEEecChhHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccc------ccC--
Q 011446 353 SKLQINQSIIFCNSVNRVELLAKKITE----LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF------TRG-- 420 (485)
Q Consensus 353 ~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~------~~G-- 420 (485)
.......++|.++|+..|.+.++.+.. .++.+..+.|+++...|.... ...|+|+|+.- ..+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~ 184 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMA 184 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhh
Confidence 334456899999999999888887765 489999999999976554432 26899999731 122
Q ss_pred -----CCCCCCCEEE
Q 011446 421 -----IDIQAVNVVI 430 (485)
Q Consensus 421 -----idi~~v~~VI 430 (485)
+...++.++|
T Consensus 185 ~~~~~~~~~~l~~lV 199 (853)
T 2fsf_A 185 FSPEERVQRKLHYAL 199 (853)
T ss_dssp SSGGGCCCCSCCEEE
T ss_pred ccHhHhcccCCcEEE
Confidence 4556777766
No 385
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=69.37 E-value=4 Score=35.93 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=18.1
Q ss_pred CEEEEccCCCchhHHhHHHHHhhh
Q 011446 159 DILARAKNGTGKTAAFCIPALEKI 182 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~~~~l~~l 182 (485)
.+++.++.|+|||+.++-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 489999999999998655444433
No 386
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=69.32 E-value=2.7 Score=40.07 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.0
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHH
Q 011446 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 150 ~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
.+..++.|.+ ++..|.||||||..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 5667778876 77899999999987
No 387
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=69.31 E-value=6.4 Score=36.73 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.6
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+-|.||+|||||+.+-
T Consensus 95 igI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSR 110 (321)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998743
No 388
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=69.25 E-value=2.6 Score=34.82 Aligned_cols=17 Identities=18% Similarity=0.032 Sum_probs=14.4
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.|+.|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37899999999999754
No 389
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=69.24 E-value=2.2 Score=39.56 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.|..+.|+||+|||||+.+-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHH
Confidence 46678999999999998643
No 390
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=69.18 E-value=7.3 Score=29.52 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=31.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKML 392 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~ 392 (485)
..+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 458999999999999999999999998889999853
No 391
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=69.18 E-value=3.8 Score=37.63 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=23.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
.|.-++|.|++|+|||+.+...+....... +..++++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 456689999999999987554333322221 22455554
No 392
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=69.17 E-value=2.2 Score=37.38 Aligned_cols=21 Identities=24% Similarity=0.093 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCchhHHhHH
Q 011446 156 TGSDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~ 176 (485)
.|.-+.+.||+|||||+.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345689999999999987543
No 393
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=69.13 E-value=9.1 Score=37.47 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=44.0
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh-cCCCeEEEEcchHHHHhhhcCccccCCcceEE
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL-YQPVHLLVGTPGRILDLSKKGVCILKDCSMLV 267 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~~Ili~Tp~~l~~~~~~~~~~l~~~~~iV 267 (485)
.+++|.||++.-+..+++.+++. +..+..++|..... ....+ ....+|+|||.- +.. ..++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~-~~~~F~~g~~~vLVaT~v-----~e~-GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFER-EYPTIKQKKPDFILATDI-----AEM-GANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESSS-----TTC-CTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHH-HHhhhcCCCceEEEECCh-----hhe-eeccC-ceEEE
Confidence 48999999999988888777664 67888888843222 22222 346789999972 333 34466 77776
No 394
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=69.08 E-value=2.5 Score=40.61 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=18.9
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHH
Q 011446 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 150 ~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
.+..++.|.+ ++..|.||||||..
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeE
Confidence 3445667776 77899999999987
No 395
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=69.07 E-value=2.9 Score=36.10 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=16.4
Q ss_pred EEEEccCCCchhHHhHHHHHh
Q 011446 160 ILARAKNGTGKTAAFCIPALE 180 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~ 180 (485)
.++.|+.|||||+.+...++.
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 689999999999976544444
No 396
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.05 E-value=2.4 Score=39.19 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.9
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.||+|+|||+.+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 58999999999998754
No 397
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=69.02 E-value=2.6 Score=36.20 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=14.0
Q ss_pred CEEEEccCCCchhHHh
Q 011446 159 DILARAKNGTGKTAAF 174 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~ 174 (485)
.+++.|+.|||||++.
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3889999999999974
No 398
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=68.99 E-value=3.5 Score=38.16 Aligned_cols=19 Identities=32% Similarity=0.400 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+.+.||+|+|||+..-
T Consensus 100 g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4458899999999998643
No 399
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=68.96 E-value=2.3 Score=36.81 Aligned_cols=17 Identities=24% Similarity=0.077 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHHh
Q 011446 158 SDILARAKNGTGKTAAF 174 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (485)
.-+.|.|++|||||+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34778999999999864
No 400
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=68.95 E-value=4 Score=34.54 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=21.3
Q ss_pred EEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcH
Q 011446 160 ILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTR 198 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~ 198 (485)
++|.|++|||||.-+...+ .. +..++|+....
T Consensus 2 ilV~Gg~~SGKS~~A~~la----~~---~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI----GD---APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH----CS---CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHH----hc---CCCeEEEecCC
Confidence 6899999999998644322 22 23567877644
No 401
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=68.72 E-value=6.5 Score=45.22 Aligned_cols=122 Identities=15% Similarity=0.252 Sum_probs=0.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHHh
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRL 235 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 235 (485)
.|+.+.|.+|.|||||+.++-.+-+.-..++ .++++.+--+|.... ++.++-.+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~---~~~~i~~e~~~~~~~---~~~~Gv~~~------------------- 1484 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHALDPIY---ARKLGVDID------------------- 1484 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTSCCCHHH---HHHTTCCGG-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCC---eEEEEecCCCCCHHH---HHHcCCCHH-------------------
Q ss_pred cCCCeEEEEcc---hHHHHhhhcCccccCCcceEEeeccccccCCC-----------------CHHHHHHHHHhCCCCCc
Q 011446 236 YQPVHLLVGTP---GRILDLSKKGVCILKDCSMLVMDEADKLLSPE-----------------FQPSVEQLIRFLPANRQ 295 (485)
Q Consensus 236 ~~~~~Ili~Tp---~~l~~~~~~~~~~l~~~~~iViDEah~~~~~~-----------------~~~~~~~i~~~~~~~~~ 295 (485)
++++.-| +..+..... ...-..+++||||.+--+.... +...+.++...+....-
T Consensus 1485 ----~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~ 1559 (1706)
T 3cmw_A 1485 ----NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT 1559 (1706)
T ss_dssp ----GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ----HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCc
Q ss_pred EEEEecccchHH
Q 011446 296 ILMFSATFPVTV 307 (485)
Q Consensus 296 ~i~~SATl~~~~ 307 (485)
+++|...+...+
T Consensus 1560 ~~i~~~~~~~~~ 1571 (1706)
T 3cmw_A 1560 LLIFINQIRMKI 1571 (1706)
T ss_dssp EEEEEECBC---
T ss_pred EEEEeecccccc
No 402
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=68.66 E-value=24 Score=32.79 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=50.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----c-ccCCCCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----F-TRGIDIQA 425 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~-~~Gidi~~ 425 (485)
...++||.+|++..+.++++.+.+. ++.+..++|+.........+. ..+|+|+|.- + ...+++.+
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 3458999999999999999998874 567888898877655433332 4689999962 1 22356777
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+++||
T Consensus 148 ~~~iI 152 (367)
T 1hv8_A 148 VKYFI 152 (367)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 88777
No 403
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=68.59 E-value=3.3 Score=40.59 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=19.7
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHH
Q 011446 149 ESIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 149 ~~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
..+..++.|-+ ++..|.||||||..
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 34555677876 78899999999987
No 404
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=68.56 E-value=1.9 Score=37.67 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.|.-+.+.||.|||||+.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999863
No 405
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=68.51 E-value=1.8 Score=38.60 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.|.||.|||||+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999986
No 406
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=68.51 E-value=2.6 Score=37.21 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.9
Q ss_pred CCEEEEccCCCchhHHhHH
Q 011446 158 SDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (485)
..+++.|++|||||++.-.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4589999999999997543
No 407
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=68.43 E-value=2.4 Score=35.55 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+++.|+.|||||++.-
T Consensus 5 g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3458899999999998744
No 408
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=68.33 E-value=4.7 Score=37.20 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=47.4
Q ss_pred cEEEEecChhHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcccc------c-cCCCCCCC
Q 011446 359 QSIIFCNSVNRVELLAKKITEL-----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLF------T-RGIDIQAV 426 (485)
Q Consensus 359 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~~------~-~Gidi~~v 426 (485)
++||.+|+++.|.++++.+... ++.+..++++...... ......|||+|.-- . ..+++.++
T Consensus 164 ~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l 236 (300)
T 3fmo_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKI 236 (300)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGGC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhhc
Confidence 7999999999999998888775 4567777776543221 13456899999732 1 35778889
Q ss_pred CEEEE
Q 011446 427 NVVIN 431 (485)
Q Consensus 427 ~~VI~ 431 (485)
.+||.
T Consensus 237 ~~lVl 241 (300)
T 3fmo_B 237 KVFVL 241 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 98874
No 409
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=68.11 E-value=2.7 Score=36.05 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+.|.|+.|||||+..-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 37899999999998743
No 410
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=68.10 E-value=4.4 Score=36.67 Aligned_cols=43 Identities=19% Similarity=0.068 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCCCcHHHH-HHHHHHhcCC-----CEEEEccCCCchhHHhH
Q 011446 130 ELLMGIFEKGFERPSPIQE-ESIPIALTGS-----DILARAKNGTGKTAAFC 175 (485)
Q Consensus 130 ~l~~~l~~~~~~~~~~~Q~-~~i~~i~~~~-----~~ii~~~TGsGKT~~~~ 175 (485)
.+.+-|+-.|++ +.+- .++...++++ .+++.||+|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 477777766764 4442 3345555543 39999999999998754
No 411
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=68.01 E-value=3.1 Score=39.79 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.5
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
-.+|.||+|+|||+.+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37899999999998764
No 412
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=68.00 E-value=2.8 Score=35.63 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=14.0
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+++.|+.|||||++.-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999999854
No 413
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=67.88 E-value=4.3 Score=38.76 Aligned_cols=37 Identities=11% Similarity=-0.058 Sum_probs=24.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcC
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVP 196 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 196 (485)
+.-++|.|++|+|||+.++..+...... +..++++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEEC
Confidence 4558999999999998765544443332 225677663
No 414
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=67.86 E-value=2.8 Score=36.81 Aligned_cols=16 Identities=38% Similarity=0.374 Sum_probs=14.1
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+++.|+.|||||++.-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999754
No 415
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=67.79 E-value=2.8 Score=36.07 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.8
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+.+.|+.|||||+..-
T Consensus 5 i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999999754
No 416
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=67.68 E-value=33 Score=33.70 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=19.2
Q ss_pred HHhcCCCEEEEccCCCchhHHhHH
Q 011446 153 IALTGSDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 153 ~i~~~~~~ii~~~TGsGKT~~~~~ 176 (485)
.+..|+.+++.|+.|+|||+....
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHH
Confidence 344678899999999999987543
No 417
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=67.68 E-value=2.6 Score=35.67 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.|+.|||||+..-
T Consensus 14 ~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 458899999999999754
No 418
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=67.53 E-value=3.5 Score=39.46 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=20.0
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHH
Q 011446 150 SIPIALTGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 150 ~i~~i~~~~~--~ii~~~TGsGKT~~ 173 (485)
.+..++.|.+ ++..|.||||||..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5667778876 78899999999987
No 419
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=67.49 E-value=2.8 Score=38.26 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=25.1
Q ss_pred CcccccCCCHHHHHHHHHcCCCCCcHHH-HHHHHHHh--cCCCEEEEccCCCchhHHh
Q 011446 120 NEFEDYFLKRELLMGIFEKGFERPSPIQ-EESIPIAL--TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 120 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q-~~~i~~i~--~~~~~ii~~~TGsGKT~~~ 174 (485)
..|.+.+-.+++.+.+.+.- ..|+. .+++..+- -.+.+++.||+|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 35666665555666555421 11111 12222211 1234999999999999863
No 420
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=67.33 E-value=2.8 Score=37.33 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.|+.|||||+.+-
T Consensus 28 ~~i~l~G~~GsGKSTl~k 45 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQ 45 (246)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458999999999998743
No 421
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=67.31 E-value=2.9 Score=35.98 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
.-+++.|+.|||||+..-
T Consensus 5 ~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 458899999999999754
No 422
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=67.21 E-value=3.1 Score=36.24 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.|++|||||++.-
T Consensus 6 ~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 348899999999999754
No 423
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=67.15 E-value=3 Score=35.31 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=13.9
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+++.|+.|||||++.-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999999754
No 424
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=67.08 E-value=2.9 Score=35.68 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+.|.|++|||||+..-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999999744
No 425
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=66.99 E-value=2.4 Score=35.62 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=11.3
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+++.|+.|||||+++-
T Consensus 6 ~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CEEEEECCC----CHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999999754
No 426
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=66.93 E-value=2.9 Score=37.25 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=15.7
Q ss_pred CCEEEEccCCCchhHHhHH
Q 011446 158 SDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (485)
..+++.|+.|||||+++-.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3589999999999998543
No 427
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=66.89 E-value=3.1 Score=35.85 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+.-+++.|+.|||||++.-
T Consensus 10 ~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp SCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4558999999999999754
No 428
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=66.79 E-value=8 Score=38.76 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=50.1
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----cccC-C-CCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FTRG-I-DIQA 425 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~~G-i-di~~ 425 (485)
..++||.||++..+...++.+.+. ++.+..++|+.+...+...+. +...|+|+|.- +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999999999988888775 889999999986544322221 13679999872 2222 3 5667
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+++||
T Consensus 128 ~~~vV 132 (555)
T 3tbk_A 128 FTLMI 132 (555)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78877
No 429
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=66.55 E-value=4.2 Score=38.00 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.2
Q ss_pred CCEEEEccCCCchhHHhHH
Q 011446 158 SDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~ 176 (485)
+.+.+.+++|+|||+....
T Consensus 106 ~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578889999999987543
No 430
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=66.50 E-value=18 Score=38.47 Aligned_cols=73 Identities=18% Similarity=0.099 Sum_probs=54.0
Q ss_pred HHhcCCCcEEEEecChhHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-c-----c---
Q 011446 352 FSKLQINQSIIFCNSVNRVELLAKKITE----LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-F-----T--- 418 (485)
Q Consensus 352 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-~-----~--- 418 (485)
+.......++|.++|...|.+.++.+.. +|+.+.++.|+++...|.... ...|+++|+- + .
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhh
Confidence 3445556899999999999888887765 489999999999987665443 2689999972 1 1
Q ss_pred ----cCCCCCCCCEEE
Q 011446 419 ----RGIDIQAVNVVI 430 (485)
Q Consensus 419 ----~Gidi~~v~~VI 430 (485)
..+....+.++|
T Consensus 221 ~~~~~~l~lr~l~~lI 236 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAI 236 (922)
T ss_dssp CSSGGGCCCCCCCEEE
T ss_pred hccHhhhccCCCCEEE
Confidence 135666777776
No 431
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=66.46 E-value=2.3 Score=40.03 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
...+++.||+|+|||+.+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3569999999999998743
No 432
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=66.30 E-value=5.6 Score=35.18 Aligned_cols=71 Identities=17% Similarity=0.301 Sum_probs=48.3
Q ss_pred CcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----ccc---CCCCCC
Q 011446 358 NQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FTR---GIDIQA 425 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~~---Gidi~~ 425 (485)
.++||.+|+++.+.++++.+.+. ++.+..++++..... .......+...|+|+|.- +.. .+++.+
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 37999999999999999999876 566666665532111 111223456789999952 212 478888
Q ss_pred CCEEEE
Q 011446 426 VNVVIN 431 (485)
Q Consensus 426 v~~VI~ 431 (485)
+.+||.
T Consensus 176 ~~~lVi 181 (245)
T 3dkp_A 176 VEWLVV 181 (245)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 988874
No 433
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=66.22 E-value=2 Score=39.23 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.|.||.|||||+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999986
No 434
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=66.09 E-value=19 Score=34.37 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=51.8
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc-----ccc-cCCCCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LFT-RGIDIQA 425 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~~-~Gidi~~ 425 (485)
...++||.+|++..+.++++.+... ++.+..++|+.........+. ....|+|+|. .+. ..++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 3468999999999999999988775 467888899887665444332 2357999995 232 3466777
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+++||
T Consensus 180 ~~~vV 184 (410)
T 2j0s_A 180 IKMLV 184 (410)
T ss_dssp CCEEE
T ss_pred eeEEE
Confidence 88877
No 435
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=65.99 E-value=1.8 Score=36.40 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=14.0
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+.|+|++|||||+...
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998743
No 436
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=65.92 E-value=2.1 Score=37.73 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.+.||.|||||+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999985
No 437
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=65.88 E-value=4.9 Score=34.88 Aligned_cols=71 Identities=7% Similarity=0.081 Sum_probs=48.8
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc--------CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc-----cccc-CCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL--------GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LFTR-GID 422 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~--------~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~~~-Gid 422 (485)
..++||.+|+++.+.++++.+.+. ++.+..++|+.+...... .+ .....|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 358999999999999999888764 577888888865433211 11 23567999995 2222 456
Q ss_pred CCCCCEEEE
Q 011446 423 IQAVNVVIN 431 (485)
Q Consensus 423 i~~v~~VI~ 431 (485)
+..+.+||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 677887773
No 438
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=65.88 E-value=15 Score=39.01 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=47.9
Q ss_pred CCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc-----ccc-CC-CCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL-----FTR-GI-DIQA 425 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~-----~~~-Gi-di~~ 425 (485)
.+++||.||++..+...++.+.+. ++.+..+||+.+...+...+. +...|+|+|.- +.. .+ .+.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999988888775 899999999986554432221 24689999962 222 23 5667
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+++||
T Consensus 372 ~~~iV 376 (797)
T 4a2q_A 372 FTLMI 376 (797)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78877
No 439
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=65.79 E-value=4.1 Score=38.59 Aligned_cols=22 Identities=23% Similarity=0.095 Sum_probs=17.0
Q ss_pred CCEEEEccCCCchhHHhHHHHH
Q 011446 158 SDILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~~~~l 179 (485)
.-+.|.||+|||||+.....+.
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999987554443
No 440
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=65.74 E-value=3.4 Score=35.63 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+.-+++.|+.|||||++.-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4558999999999999854
No 441
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=65.70 E-value=2.1 Score=38.34 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.|.||.|||||+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999986
No 442
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=65.60 E-value=3.3 Score=37.11 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
+..+.|.||+|||||+.+-
T Consensus 27 g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4558899999999998743
No 443
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=65.57 E-value=5.8 Score=29.55 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM 391 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~ 391 (485)
..+++|||.+-..+...+..|...|+++..+.|++
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 45899999999999999999999999888888884
No 444
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=65.35 E-value=11 Score=31.87 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=19.0
Q ss_pred CeEEEEcchHHHHhhhcCccccCCcceEEeeccc
Q 011446 239 VHLLVGTPGRILDLSKKGVCILKDCSMLVMDEAD 272 (485)
Q Consensus 239 ~~Ili~Tp~~l~~~~~~~~~~l~~~~~iViDEah 272 (485)
.+++-+.++.+...+... ...+++||+|=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l---~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD---LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH---TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh---cCCCCEEEEECCC
Confidence 455555556666655542 2358999999543
No 445
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=65.13 E-value=4.3 Score=40.23 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=16.4
Q ss_pred CCCEEEEccCCCchhHHhHH
Q 011446 157 GSDILARAKNGTGKTAAFCI 176 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~ 176 (485)
..++++.||+|+|||+.+-.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 35699999999999987543
No 446
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=65.08 E-value=2.3 Score=38.51 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.|.-+.|.||.|||||+.+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566899999999999863
No 447
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=65.07 E-value=4.3 Score=45.79 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=23.5
Q ss_pred CCcceEEeeccccccCCCCHHHHHHHHHhCCCCCcEEEE
Q 011446 261 KDCSMLVMDEADKLLSPEFQPSVEQLIRFLPANRQILMF 299 (485)
Q Consensus 261 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~ 299 (485)
.+-+++|+||+-..++..-...+...+.....++-+|+.
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i 581 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVI 581 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456899999998766654444555555444344433333
No 448
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=64.95 E-value=3.3 Score=37.29 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
-++++|++|||||+.+-
T Consensus 6 lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 48899999999999754
No 449
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=64.93 E-value=2.2 Score=38.70 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.+.||.|||||+.
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999986
No 450
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=64.74 E-value=4.7 Score=38.36 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHHhH
Q 011446 158 SDILARAKNGTGKTAAFC 175 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~~ 175 (485)
..+.++||+|+|||+..-
T Consensus 158 ~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 447899999999998743
No 451
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=64.73 E-value=2.9 Score=36.96 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.+.||.|||||+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999986
No 452
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=64.71 E-value=8.3 Score=28.24 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=30.7
Q ss_pred CcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCCC
Q 011446 358 NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKML 392 (485)
Q Consensus 358 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~ 392 (485)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 68999999998999999999999999777888764
No 453
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=64.50 E-value=5.5 Score=30.05 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=30.7
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM 391 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~ 391 (485)
..+++|||.+-..+...+..|.+.|+.+..+.|++
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 45899999998889999999999999988888874
No 454
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.39 E-value=22 Score=33.86 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=52.0
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEcc-----cc-ccCCCCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITEL----GYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD-----LF-TRGIDIQA 425 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~-----~~-~~Gidi~~ 425 (485)
...++||.+|++..+.++++.+... +..+..++++...... ......+...|+|+|. .+ ...++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4458999999999999999988775 5677777777654433 4455567789999995 22 23456667
Q ss_pred CCEEE
Q 011446 426 VNVVI 430 (485)
Q Consensus 426 v~~VI 430 (485)
+.+||
T Consensus 184 ~~~vV 188 (414)
T 3eiq_A 184 IKMFV 188 (414)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 78777
No 455
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=64.18 E-value=2.4 Score=38.38 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.|.||.|||||+.
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999985
No 456
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=64.16 E-value=5.6 Score=29.80 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=31.0
Q ss_pred CCcEEEEecChhHHHHHHHHHHHcCCeEEEEcCCC
Q 011446 357 INQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM 391 (485)
Q Consensus 357 ~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~ 391 (485)
..+++|||.+-..+...+..|...|+++..+.|++
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 45799999999899999999999999888888884
No 457
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.10 E-value=14 Score=36.14 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.1
Q ss_pred CCCEEEEccCCCchhHHhH
Q 011446 157 GSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~ 175 (485)
.+++++.||+|+|||+.+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3679999999999998753
No 458
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=63.99 E-value=7.7 Score=37.22 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=21.3
Q ss_pred HHHHHHHh---cCCCEEEEccCCCchhHHhH
Q 011446 148 EESIPIAL---TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 148 ~~~i~~i~---~~~~~ii~~~TGsGKT~~~~ 175 (485)
..+|+.++ .|+.+.|.|++|+|||+...
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 34555444 57889999999999998754
No 459
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=63.78 E-value=3.1 Score=37.56 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|..+.+.||.|||||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999985
No 460
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.57 E-value=3.1 Score=37.05 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.+.||.|||||+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999986
No 461
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.45 E-value=7.6 Score=46.93 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.6
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q 011446 154 ALTGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 154 i~~~~~~ii~~~TGsGKT~~~ 174 (485)
+..++.++++||||+|||+.+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 345688999999999999863
No 462
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=63.44 E-value=2.1 Score=38.22 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.|.-+.|.||.|||||+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4556889999999999863
No 463
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=63.28 E-value=3 Score=34.44 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.|..+.+.||.|+|||+..
T Consensus 32 ~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4455889999999999863
No 464
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=63.09 E-value=3.5 Score=42.27 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=14.0
Q ss_pred CEEEEccCCCchhHH
Q 011446 159 DILARAKNGTGKTAA 173 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~ 173 (485)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 799999999999975
No 465
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=62.98 E-value=2.6 Score=37.99 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.+.||.|||||+.
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456688999999999986
No 466
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=62.98 E-value=2.9 Score=39.99 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=21.9
Q ss_pred CeEEEE---cCCCCHHHHHHHHHHHhc--CCccEEEEcccc
Q 011446 382 YSCFYI---HAKMLQDHRNRVFHDFRN--GACRNLVCTDLF 417 (485)
Q Consensus 382 ~~~~~~---h~~~~~~~r~~i~~~f~~--g~~~vlvaT~~~ 417 (485)
.++..+ .++++...+..+.+.... ....|+++|--.
T Consensus 306 ~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~ 346 (371)
T 3auy_A 306 VECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHR 346 (371)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCG
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChH
Confidence 455555 567888888877776653 223566665543
No 467
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=62.95 E-value=22 Score=38.07 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=46.6
Q ss_pred HHhcCCCcEEEEecChhHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 011446 352 FSKLQINQSIIFCNSVNRVELLAKKITE----LGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 416 (485)
Q Consensus 352 ~~~~~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~i~~~f~~g~~~vlvaT~~ 416 (485)
+.......++|.++|...|.+.++.+.. +|+.+..+.|+++...|.... ...|+++|+.
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 4455556899999999999888887765 489999999999977666543 3689999973
No 468
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=62.94 E-value=3.9 Score=35.52 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=14.4
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+.|.|+.|||||++.-
T Consensus 6 ~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 6 IVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999754
No 469
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.65 E-value=2.7 Score=38.10 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.+.||.|||||+.
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 456688999999999986
No 470
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=62.45 E-value=2.7 Score=38.26 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.|.||.|||||+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999985
No 471
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=62.37 E-value=2.7 Score=37.74 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|..+.+.||.|||||+.
T Consensus 25 ~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999986
No 472
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=62.28 E-value=2.4 Score=36.71 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.8
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+++.|+.|||||+..-
T Consensus 3 I~i~G~~GsGKsTl~~ 18 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVE 18 (214)
T ss_dssp EEEEEEEEEEHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6889999999999753
No 473
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=62.26 E-value=3.1 Score=37.29 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.5
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+++.|++|||||+.+-
T Consensus 34 ~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEESCGGGTTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998744
No 474
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=62.22 E-value=2.8 Score=38.09 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.+.||.|||||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999986
No 475
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=62.14 E-value=4.3 Score=34.74 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=13.9
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+.+.|+.|||||++.-
T Consensus 15 IgltG~~GSGKSTva~ 30 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7789999999999754
No 476
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=62.10 E-value=4.2 Score=34.91 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
-+.|.|+.|||||+.+-
T Consensus 24 ~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998743
No 477
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=61.81 E-value=2.8 Score=38.39 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|.-+.|.||.|||||+.
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456688999999999986
No 478
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=61.76 E-value=3.6 Score=37.36 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.|.-+.|.||.|||||+.+
T Consensus 45 ~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999863
No 479
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=61.66 E-value=3.9 Score=38.13 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHH
Q 011446 156 TGSDILARAKNGTGKTAAFCIPAL 179 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l 179 (485)
.++.+++.||+|+|||+.+...+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345589999999999987555444
No 480
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=61.41 E-value=2.3 Score=39.47 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.|.-+.|+||+|||||+.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 4566899999999999863
No 481
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=61.06 E-value=61 Score=33.50 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=54.9
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHH---h-cCCCeEEEEcchHHHHhhhcCccccCCc
Q 011446 188 VIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR---L-YQPVHLLVGTPGRILDLSKKGVCILKDC 263 (485)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~-~~~~~Ili~Tp~~l~~~~~~~~~~l~~~ 263 (485)
+.++||.|+++..+..+.+.+.+. ++.+..++|+....+.... + ....+|+|||.- +.. ...+.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~-----l~~-GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL-----LRE-GLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC-----CST-TCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch-----hhC-CcccCCC
Confidence 348999999999987777776654 6778888887664433322 2 246789999972 333 4557789
Q ss_pred ceEEeeccccc
Q 011446 264 SMLVMDEADKL 274 (485)
Q Consensus 264 ~~iViDEah~~ 274 (485)
++||+-+++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999888754
No 482
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=61.04 E-value=3.7 Score=36.82 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.|..+.+.||.|||||+.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566889999999999864
No 483
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=60.89 E-value=3.7 Score=36.91 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 011446 156 TGSDILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~ 173 (485)
.|..+.+.||.|||||+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999986
No 484
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=60.78 E-value=4.9 Score=34.67 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
-.+|.||+|+|||+.+-
T Consensus 25 ~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 37899999999998743
No 485
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=60.30 E-value=3.4 Score=40.99 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHh
Q 011446 158 SDILARAKNGTGKTAAF 174 (485)
Q Consensus 158 ~~~ii~~~TGsGKT~~~ 174 (485)
+.+++.||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999874
No 486
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=60.15 E-value=4.6 Score=37.14 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.7
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+.|+|++|||||+.+-
T Consensus 34 i~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7789999999998753
No 487
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=59.95 E-value=11 Score=29.44 Aligned_cols=36 Identities=14% Similarity=0.379 Sum_probs=31.0
Q ss_pred CcEEEEe-cChhHHHHHHHHHHHcCCeEEEEcCCCCH
Q 011446 358 NQSIIFC-NSVNRVELLAKKITELGYSCFYIHAKMLQ 393 (485)
Q Consensus 358 ~~~lVf~-~~~~~~~~l~~~L~~~~~~~~~~h~~~~~ 393 (485)
.+++||| .+-..+..++..|...|+++..+.|++..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57778889999999999998999998653
No 488
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=59.87 E-value=41 Score=35.54 Aligned_cols=75 Identities=7% Similarity=-0.003 Sum_probs=51.7
Q ss_pred ceEEEEEcCcHHHHHHHHHHHHHHh-------ccCCceEEEEECCCChHHHHHHhc---------CCCeEEEEcchHHHH
Q 011446 188 VIQVVILVPTRELALQTSQVCKELG-------KHLNIQVMVTTGGTSLKDDIMRLY---------QPVHLLVGTPGRILD 251 (485)
Q Consensus 188 ~~~~lil~P~~~la~q~~~~~~~~~-------~~~~~~v~~~~g~~~~~~~~~~~~---------~~~~Ili~Tp~~l~~ 251 (485)
...+||.||++.-+..+++.+.+.. ...++.+..++|+....++...+. ....|+|||.- +
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i-a-- 379 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI-A-- 379 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH-H--
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH-H--
Confidence 4489999999999988888777532 224678899999987766544332 24579999962 2
Q ss_pred hhhcCccccCCcceEEe
Q 011446 252 LSKKGVCILKDCSMLVM 268 (485)
Q Consensus 252 ~~~~~~~~l~~~~~iVi 268 (485)
.. ..++..+.+||-
T Consensus 380 --e~-GidIp~v~~VId 393 (773)
T 2xau_A 380 --ET-SLTIDGIVYVVD 393 (773)
T ss_dssp --HH-TCCCTTEEEEEE
T ss_pred --Hh-CcCcCCeEEEEe
Confidence 22 344667776663
No 489
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=59.23 E-value=6.6 Score=38.99 Aligned_cols=17 Identities=41% Similarity=0.474 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHhH
Q 011446 159 DILARAKNGTGKTAAFC 175 (485)
Q Consensus 159 ~~ii~~~TGsGKT~~~~ 175 (485)
.+.++|++|||||+..-
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 47889999999998743
No 490
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=58.89 E-value=11 Score=36.64 Aligned_cols=53 Identities=9% Similarity=0.069 Sum_probs=38.2
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHhccCCceEEEEECCCChHHHHHH-hcCCCeEEEEcc
Q 011446 189 IQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMR-LYQPVHLLVGTP 246 (485)
Q Consensus 189 ~~~lil~P~~~la~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-~~~~~~Ili~Tp 246 (485)
.+++|+||++.-+..+++.+.+. +..+..++|... ...... .....+|+|||.
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc
Confidence 37999999999988888777765 678888888632 222222 235689999997
No 491
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=58.81 E-value=4.9 Score=36.91 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=14.1
Q ss_pred EEEEccCCCchhHHhH
Q 011446 160 ILARAKNGTGKTAAFC 175 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~ 175 (485)
+++.|++|||||+.+-
T Consensus 5 I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999754
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=58.77 E-value=7.2 Score=39.25 Aligned_cols=28 Identities=29% Similarity=0.219 Sum_probs=20.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHhhhh
Q 011446 156 TGSDILARAKNGTGKTAAFCIPALEKID 183 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~~~~l~~l~ 183 (485)
.|..+.|.||+|||||+.....++.-+.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999986654344443
No 493
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=58.76 E-value=19 Score=25.54 Aligned_cols=36 Identities=14% Similarity=0.331 Sum_probs=28.6
Q ss_pred CCCcEEEEecChhHHHHHHHHHHHcCCe-EEEEcCCCC
Q 011446 356 QINQSIIFCNSVNRVELLAKKITELGYS-CFYIHAKML 392 (485)
Q Consensus 356 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~-~~~~h~~~~ 392 (485)
...+++|||.+-..+...+..|.+.|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4458999999988999999999999985 4444 6643
No 494
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=58.75 E-value=3.4 Score=38.01 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q 011446 156 TGSDILARAKNGTGKTAAF 174 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~ 174 (485)
.|.-+.+.||.|||||+.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4566889999999999863
No 495
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=58.58 E-value=9.6 Score=34.32 Aligned_cols=51 Identities=6% Similarity=-0.017 Sum_probs=28.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEcCcHHHHHHHHHHHHHH
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKEL 211 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~P~~~la~q~~~~~~~~ 211 (485)
+..+++.+.+|+|||+..+..+...+..+ -++++++=. +-..++.+.++.+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~G---e~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSD---NLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTT---CEEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCC---CcEEEEEEe-CCHHHHHHHHHHc
Confidence 34578887888888865555555555442 266766622 2223334444444
No 496
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=58.57 E-value=6.2 Score=37.45 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.2
Q ss_pred cCCC--EEEEccCCCchhHH
Q 011446 156 TGSD--ILARAKNGTGKTAA 173 (485)
Q Consensus 156 ~~~~--~ii~~~TGsGKT~~ 173 (485)
.|.+ ++..|.||||||..
T Consensus 82 ~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHH
T ss_pred CCceeEEEeeCCCCCCCCEE
Confidence 3665 68899999999987
No 497
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=58.55 E-value=4.9 Score=40.69 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.6
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.+..+++.||+|+|||+.+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35679999999999998743
No 498
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=58.29 E-value=5 Score=33.70 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHhH
Q 011446 156 TGSDILARAKNGTGKTAAFC 175 (485)
Q Consensus 156 ~~~~~ii~~~TGsGKT~~~~ 175 (485)
.++-+++.|+.|+|||+.++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 34569999999999998743
No 499
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=57.91 E-value=5.1 Score=40.09 Aligned_cols=37 Identities=16% Similarity=0.045 Sum_probs=25.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHhhhhccCCceEEEEEc
Q 011446 157 GSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILV 195 (485)
Q Consensus 157 ~~~~ii~~~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 195 (485)
+.-++|.|++|+|||+.++..+....... +.++++++
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s 278 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAM 278 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEE
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEe
Confidence 45589999999999988665555544331 23567765
No 500
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=57.91 E-value=5.5 Score=35.27 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHhHHHH
Q 011446 160 ILARAKNGTGKTAAFCIPA 178 (485)
Q Consensus 160 ~ii~~~TGsGKT~~~~~~~ 178 (485)
+.|.||+|||||+.+-..+
T Consensus 12 i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Done!