Citrus Sinensis ID: 011447


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-----
MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSGPLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHccccccEEEEEEEEEEccccccccccccccEEEEEccEEEEcccccccccccccccccccccccEEccEEEEEccccccEEEEEEcccccEEEEEEccEEEEcccccccccHHHHHHHHHcccccHHHHHHHHccccccccEEEEEEEEEEcccEEEEccccccccccccccEEcccccccEEEEEEccccccccccc
cccccccccccccEEEccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccEEEEEEEEEcccccccccccccccEEEEEEEEEEEcccccccccccccccEEcccHHHHHEEEEEEEccccccEEEEEcccccEEEEEEcccEEEEEccccccccHHHHHHHHHccccccccEEEEEccEEEcccEEEEEEEEEEcccEEEEEccccccccccHHHHEEccccEcEEEEEEcccccccEccc
mgsrfpshqlsnglyvsgrpeqpkertptmssvampytggdikksgelgkmfdipvdgsksrksgpinnapsrtgsfggaashsgpimpnaasrasystsgpvssgvtsgsaslkksnsgplnkhgeplkkssgpqsggvtpsgrqnsgplapalpttglitsgpissaplnssgaprkvsgpldsmgsmkipssvphnqaitvlsqdedfdfkrnfpkpiFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARypdaelrnakngqfvKISGVvtcgnvplessfqkvprciytstslyeyrgwgskaanpthrrftWGLRSLERRAVDFYISDFQSGLRALVKtgygarvtpyvddslaidvnpgkeelsPEFIRWLAERNLSSDDRIMRLKegyikegstVSVMGVVqrndnvlmivpppepittgcqwakcivpaSLDGIVLRCedaskndvipv
mgsrfpshqlsnglyvsgrpeqpkertptmssvampytggdikksgelGKMFDIPvdgsksrksgpinnAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKksnsgplnkhgeplkkssgpqSGGVTPSGRQNSGPLAPALPTTGLITSGPIssaplnssgapRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGnvplessfqkvprcIYTSTSLYEYRgwgskaanpthrrfTWGLRSLERRAVDFYISDFQSGLRALVKTGygarvtpyvddslaidvnpgkeelspefIRWLAernlssddrIMRLKegyikegstvsVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRcedaskndvipv
MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRasystsgpvssgvtsgsasLKKSNSGPLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV
*********************************************************************************************************************************************************************************************************ITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCE**********
***********************************************************************************************************************************************************************************************************************NFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPG*EELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDAS***VIPV
**********SNGLYVSG************SSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNA********************************************************SGPLAPALPTTGLITSGPISSAPLNSSGAPRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV
*************************************TGGDIKKSGELGKMFDIPVD***********************************************************************************************P*LPT*****************************************NQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDV***
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MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSGPLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKVSGPLDSMGSMKIPSSVPHNQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISGVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASKNDVIPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query485 2.2.26 [Sep-21-2011]
Q9FZ45474 Uncharacterized membrane yes no 0.973 0.995 0.718 0.0
>sp|Q9FZ45|Y1686_ARATH Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1 Back     alignment and function desciption
 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/487 (71%), Positives = 402/487 (82%), Gaps = 15/487 (3%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSR+PSHQLSNGL+VSGRPEQPKER PTMS+VAMPYTGGDIK+SGELGKMFDIP DG+K
Sbjct: 1   MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPI  APSR+GSF G A  SGP  P A  R S S +       ++GS S+KK+NSG
Sbjct: 61  SRKSGPIPGAPSRSGSFAGTA-QSGPGAPMATGRMSGSLA-------SAGSVSMKKTNSG 112

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PL+KHGEPLKKSSGPQSGGVT   RQNSG + P LP TGLITSGPI+S PLNSSGAPRKV
Sbjct: 113 PLSKHGEPLKKSSGPQSGGVT---RQNSGSI-PILPATGLITSGPITSGPLNSSGAPRKV 168

Query: 181 SGPLDSMGSMK--IPSSVPHNQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGF 238
           SGPLDS G MK  +P+ V HNQA+T L  ++DF   ++FPKP+ W ++L+F+MGF+AGGF
Sbjct: 169 SGPLDSSGLMKSHMPTVV-HNQAVTTLGPEDDFSCLKSFPKPVLWLVVLIFIMGFLAGGF 227

Query: 239 ILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKIS 298
           ILGAVHN ILL+VV +LF+ VAALF WN  WGR+ I  +IARYPDA+LR AKNGQ VK++
Sbjct: 228 ILGAVHNPILLVVVAILFTVVAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVT 287

Query: 299 GVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFY 358
           GVVTCGNVPLESSF +VPRC+YTST LYEYRGWGSK AN +HR FTWGLRS ER  VDFY
Sbjct: 288 GVVTCGNVPLESSFHRVPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFY 347

Query: 359 ISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMR 418
           ISDFQSGLRALVKTG GA+VTP VDDS+ ID   G E++SP+F+RWL ++NL+SDDRIMR
Sbjct: 348 ISDFQSGLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMR 407

Query: 419 LKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDAS 478
           LKEGYIKEGSTVSV+GVVQRNDNVLMIVP  EP+  G QW +C  P SL+GIVLRCED+S
Sbjct: 408 LKEGYIKEGSTVSVIGVVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSS 467

Query: 479 KNDVIPV 485
             D IPV
Sbjct: 468 NVDAIPV 474





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
224097428485 predicted protein [Populus trichocarpa] 0.997 0.997 0.888 0.0
224113259485 predicted protein [Populus trichocarpa] 0.997 0.997 0.882 0.0
255544532486 conserved hypothetical protein [Ricinus 1.0 0.997 0.893 0.0
356526298485 PREDICTED: uncharacterized membrane prot 0.997 0.997 0.841 0.0
356523113484 PREDICTED: uncharacterized membrane prot 0.995 0.997 0.835 0.0
356521668483 PREDICTED: uncharacterized membrane prot 0.983 0.987 0.827 0.0
356526336487 PREDICTED: uncharacterized membrane prot 0.983 0.979 0.827 0.0
449512773485 PREDICTED: uncharacterized membrane prot 1.0 1.0 0.808 0.0
225445951481 PREDICTED: uncharacterized membrane prot 0.989 0.997 0.812 0.0
449453357485 PREDICTED: uncharacterized membrane prot 1.0 1.0 0.806 0.0
>gi|224097428|ref|XP_002310930.1| predicted protein [Populus trichocarpa] gi|222850750|gb|EEE88297.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/486 (88%), Positives = 457/486 (94%), Gaps = 2/486 (0%)

Query: 1   MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
           MGSRFPSHQLSNGLYVSGRPEQPKER PTMSSVAMPYTGGDIK+SGELGKMFDIPVDGSK
Sbjct: 1   MGSRFPSHQLSNGLYVSGRPEQPKERAPTMSSVAMPYTGGDIKRSGELGKMFDIPVDGSK 60

Query: 61  SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRASYSTSGPVSSGVTSGSASLKKSNSG 120
           SRKSGPI  APSRTGSFGGAASHSGPIMPNAA+RA+Y+TSG VSSG T GS SLKKSNSG
Sbjct: 61  SRKSGPITGAPSRTGSFGGAASHSGPIMPNAAARAAYTTSGAVSSGGT-GSVSLKKSNSG 119

Query: 121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
           PLNKHGEP+KKSSGPQSGGVTPSGRQNSGP+ P LPTTGLITSGPISS PLNSSGAPRKV
Sbjct: 120 PLNKHGEPVKKSSGPQSGGVTPSGRQNSGPIPPVLPTTGLITSGPISSGPLNSSGAPRKV 179

Query: 181 SGPLDSMGSMKIPS-SVPHNQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGFI 239
           SGPL+SMGSMK P  +V HNQA+TVLSQD+DF F++NFPK I WSLILLFVMGFIAGGFI
Sbjct: 180 SGPLESMGSMKNPGYAVIHNQAVTVLSQDDDFSFRKNFPKLILWSLILLFVMGFIAGGFI 239

Query: 240 LGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKISG 299
           LGAVHNAILLIVVVVLF  VA+ F WNT +GR+AI++YIARYPDAELRNAKNGQFVKISG
Sbjct: 240 LGAVHNAILLIVVVVLFGAVASFFIWNTCFGRRAIMAYIARYPDAELRNAKNGQFVKISG 299

Query: 300 VVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFYI 359
           VVTCGNVPLESSFQ+VPRC+YTSTSLYEYRGW SKAANPTHRRF+WGLRSLERRAVDFYI
Sbjct: 300 VVTCGNVPLESSFQRVPRCVYTSTSLYEYRGWDSKAANPTHRRFSWGLRSLERRAVDFYI 359

Query: 360 SDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMRL 419
           SDFQSGLRALVKTGYGARVTPYVDDSL ID NPG EELSP+F++WL ERNLSSDDRIMR+
Sbjct: 360 SDFQSGLRALVKTGYGARVTPYVDDSLVIDANPGAEELSPDFVKWLGERNLSSDDRIMRM 419

Query: 420 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDASK 479
           KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCI PASL+GIVLRCED SK
Sbjct: 420 KEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIFPASLEGIVLRCEDTSK 479

Query: 480 NDVIPV 485
           NDVIPV
Sbjct: 480 NDVIPV 485




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113259|ref|XP_002316439.1| predicted protein [Populus trichocarpa] gi|222865479|gb|EEF02610.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255544532|ref|XP_002513327.1| conserved hypothetical protein [Ricinus communis] gi|223547235|gb|EEF48730.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356526298|ref|XP_003531755.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max] Back     alignment and taxonomy information
>gi|356523113|ref|XP_003530186.1| PREDICTED: uncharacterized membrane protein At1g16860 [Glycine max] Back     alignment and taxonomy information
>gi|356521668|ref|XP_003529475.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max] Back     alignment and taxonomy information
>gi|356526336|ref|XP_003531774.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max] Back     alignment and taxonomy information
>gi|449512773|ref|XP_004164135.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225445951|ref|XP_002264547.1| PREDICTED: uncharacterized membrane protein At1g16860 [Vitis vinifera] gi|147844463|emb|CAN82086.1| hypothetical protein VITISV_031055 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449453357|ref|XP_004144424.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query485
TAIR|locus:2015646474 AT1G16860 [Arabidopsis thalian 0.973 0.995 0.708 2.2e-185
TAIR|locus:2037533468 AT1G78880 "AT1G78880" [Arabido 0.863 0.895 0.659 1.4e-151
TAIR|locus:2132075445 AT4G22290 "AT4G22290" [Arabido 0.705 0.768 0.514 2.7e-93
TAIR|locus:2015646 AT1G16860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1798 (638.0 bits), Expect = 2.2e-185, P = 2.2e-185
 Identities = 345/487 (70%), Positives = 394/487 (80%)

Query:     1 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSK 60
             MGSR+PSHQLSNGL+VSGRPEQPKER PTMS+VAMPYTGGDIK+SGELGKMFDIP DG+K
Sbjct:     1 MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60

Query:    61 SRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRXXXXXXXXXXXXXXXXXXXLKKSNSG 120
             SRKSGPI  APSR+GSF G A  SGP  P A  R                   +KK+NSG
Sbjct:    61 SRKSGPIPGAPSRSGSFAGTAQ-SGPGAPMATGRMSGSLASAGSVS-------MKKTNSG 112

Query:   121 PLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGAPRKV 180
             PL+KHGEPLKKSSGPQSGGVT   RQNSG + P LP TGLITSGPI+S PLNSSGAPRKV
Sbjct:   113 PLSKHGEPLKKSSGPQSGGVT---RQNSGSI-PILPATGLITSGPITSGPLNSSGAPRKV 168

Query:   181 SGPLDSMGSMK--IPSSVPHNQAITVLSQDEDFDFKRNFPKPIFWSLILLFVMGFIAGGF 238
             SGPLDS G MK  +P+ V HNQA+T L  ++DF   ++FPKP+ W ++L+F+MGF+AGGF
Sbjct:   169 SGPLDSSGLMKSHMPTVV-HNQAVTTLGPEDDFSCLKSFPKPVLWLVVLIFIMGFLAGGF 227

Query:   239 ILGAVHNAILLIVVVVLFSCVAALFGWNTFWGRKAIISYIARYPDAELRNAKNGQFVKIS 298
             ILGAVHN ILL+VV +LF+ VAALF WN  WGR+ I  +IARYPDA+LR AKNGQ VK++
Sbjct:   228 ILGAVHNPILLVVVAILFTVVAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVT 287

Query:   299 GVVTCGNVPLESSFQKVPRCIYTSTSLYEYRGWGSKAANPTHRRFTWGLRSLERRAVDFY 358
             GVVTCGNVPLESSF +VPRC+YTST LYEYRGWGSK AN +HR FTWGLRS ER  VDFY
Sbjct:   288 GVVTCGNVPLESSFHRVPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFY 347

Query:   359 ISDFQSGLRALVKTGYGARVTPYVDDSLAIDVNPGKEELSPEFIRWLAERNLSSDDRIMR 418
             ISDFQSGLRALVKTG GA+VTP VDDS+ ID   G E++SP+F+RWL ++NL+SDDRIMR
Sbjct:   348 ISDFQSGLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMR 407

Query:   419 LKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPITTGCQWAKCIVPASLDGIVLRCEDAS 478
             LKEGYIKEGSTVSV+GVVQRNDNVLMIVP  EP+  G QW +C  P SL+GIVLRCED+S
Sbjct:   408 LKEGYIKEGSTVSVIGVVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSS 467

Query:   479 KNDVIPV 485
               D IPV
Sbjct:   468 NVDAIPV 474




GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2037533 AT1G78880 "AT1G78880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132075 AT4G22290 "AT4G22290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FZ45Y1686_ARATHNo assigned EC number0.71860.97310.9957yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00080044
hypothetical protein (485 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
pfam1115157 pfam11151, DUF2929, Protein of unknown function (D 0.003
>gnl|CDD|204597 pfam11151, DUF2929, Protein of unknown function (DUF2929) Back     alignment and domain information
 Score = 35.7 bits (83), Expect = 0.003
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 221 IFWSLILLFVMGFIAGGFILGAVHNAILLIVVVVLFSCVAALFG 264
            FWS +L  V+G+I    + G  +N +  I++ V+F  +  L  
Sbjct: 7   FFWSFLLGQVVGYIVSS-LTGGTYNFLTAIIIAVIFGILVFLLI 49


This family of proteins with unknown function appears to be restricted to Firmicutes. Length = 57

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 485
PF12483160 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 Thi 99.09
PF13829224 DUF4191: Domain of unknown function (DUF4191) 94.51
PF13567176 DUF4131: Domain of unknown function (DUF4131) 89.88
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length Back     alignment and domain information
Probab=99.09  E-value=6.1e-10  Score=100.71  Aligned_cols=103  Identities=22%  Similarity=0.373  Sum_probs=71.4

Q ss_pred             ceeeeeeeeceeeeeeEEecCCCceeEEE-ecCCCceeeeeeccceeeec-CCCCCCCCHHHHHHHHhcCCCCCCceeEE
Q 011447          342 RFTWGLRSLERRAVDFYISDFQSGLRALV-KTGYGARVTPYVDDSLAIDV-NPGKEELSPEFIRWLAERNLSSDDRIMRL  419 (485)
Q Consensus       342 r~~W~l~~~Er~~~dFyIsD~~sG~RALV-kaG~GarV~P~Vees~VvD~-~~~~kd~S~el~~wL~ernLSsd~r~mRy  419 (485)
                      ...|++++.++..++|||.|.+ | +.+| ....++.+.    -.++.|. .+........+..|+...- ..+.+.+||
T Consensus        16 ~~~~~~v~~~~~~vPF~L~D~t-g-~v~V~~~p~~a~l~----l~~v~~~f~p~~~~~~~~~~~~~~~~~-~~~~~G~r~   88 (160)
T PF12483_consen   16 SSSWRTVSSGTSEVPFYLEDGT-G-RVRVVDDPEGAELD----LETVYDRFEPSPSSPPDGLFGFFSGER-ELEPKGYRY   88 (160)
T ss_pred             cccEEEEEcceeEcCEEEECCc-e-EEEEecCcccCccc----eeeEEEEeEECCCCccceeeeeeccce-eccccccEE
Confidence            4569999999999999999975 4 5666 445566643    2355553 2332223333333332222 112677999


Q ss_pred             EeeeccCCCEEEEEEEE-EecCceeeEeCCCCc
Q 011447          420 KEGYIKEGSTVSVMGVV-QRNDNVLMIVPPPEP  451 (485)
Q Consensus       420 kEgiI~eGs~VsVmGvv-~r~~~vlmI~pP~E~  451 (485)
                      +|++|++|++|+|+|.+ .++++.++|.+|.+.
T Consensus        89 ~E~~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g  121 (160)
T PF12483_consen   89 TEEILPVGTPLTVVGELVRDGDGNLVIQPPKDG  121 (160)
T ss_pred             EEEEcCCCCEEEEEEEEEEcCCCcEEEeCCCCC
Confidence            99999999999999999 667789999999987



There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity

>PF13829 DUF4191: Domain of unknown function (DUF4191) Back     alignment and domain information
>PF13567 DUF4131: Domain of unknown function (DUF4131) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query485
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.0 bits (95), Expect = 9e-04
 Identities = 50/358 (13%), Positives = 107/358 (29%), Gaps = 125/358 (34%)

Query: 184 LD-SMGSMKIPSSVPHNQAI-TVLSQD--EDFDFK--RNFPKPI---------------- 221
           +D   G  +        + I +V      ++FD K  ++ PK I                
Sbjct: 7   MDFETGEHQY-----QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 222 ------FWSLIL-------LFVMGFIAG--GFILGAVHNAIL--LIVVVVLFSCVAALFG 264
                 FW+L+         FV   +     F++  +        ++  +       L+ 
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 265 WNTFWGRKAIISY-IARY-PDAELRNA----KNGQFVKISGVVTCG----------NVPL 308
            N     +    Y ++R  P  +LR A    +  + V I GV+  G          +  +
Sbjct: 122 DN-----QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 309 ESSFQ------KVPRCIYTST------SLY-----EYRGWGSKAANPTHR--------RF 343
           +           +  C    T       L       +      ++N   R        R 
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 344 TWGLRSLER-----------RAVD-FYISDFQSGLRALVKTGYGARVTPYVDDSLA--ID 389
               +  E            +A + F   +     + L+ T +  +VT ++  +    I 
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAF---NLSC--KILLTTRF-KQVTDFLSAATTTHIS 290

Query: 390 VNPGKEELSPE-----FIRWLAERNLSSDDRIMRLKEGYIKEGS--TVSVMGVVQRND 440
           ++     L+P+      +++L   +    D    L    +   +   +S++    R+ 
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYL---DCRPQD----LPR-EVLTTNPRRLSIIAESIRDG 340


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00