Query 011450
Match_columns 485
No_of_seqs 310 out of 2406
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:23:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 3.1E-61 1E-65 491.5 19.7 285 42-374 26-316 (329)
2 1nlt_A Protein YDJ1, mitochond 100.0 6.3E-49 2.2E-53 386.6 19.5 201 165-369 40-248 (248)
3 3agx_A DNAJ homolog subfamily 100.0 4.4E-40 1.5E-44 309.3 20.0 162 210-372 15-179 (181)
4 2q2g_A HSP40 protein, heat sho 100.0 2E-37 7E-42 290.9 18.4 143 230-372 36-179 (180)
5 1c3g_A Heat shock protein 40; 100.0 1.1E-36 3.6E-41 283.5 14.1 140 229-369 30-170 (170)
6 3i38_A Putative chaperone DNAJ 99.9 9.8E-26 3.3E-30 194.9 11.0 96 277-375 2-97 (109)
7 1xao_A YDJ1, mitochondrial pro 99.9 2.2E-23 7.4E-28 183.5 10.8 95 281-376 1-100 (121)
8 1bq0_A DNAJ, HSP40; chaperone, 99.9 3.8E-24 1.3E-28 183.0 5.3 97 43-139 2-99 (103)
9 1hdj_A Human HSP40, HDJ-1; mol 99.9 1.1E-22 3.9E-27 164.6 6.9 74 42-115 1-74 (77)
10 2ctr_A DNAJ homolog subfamily 99.9 4.1E-22 1.4E-26 165.6 6.1 77 42-118 5-81 (88)
11 2ctp_A DNAJ homolog subfamily 99.8 1.1E-21 3.8E-26 159.2 5.6 73 41-113 4-76 (78)
12 2dn9_A DNAJ homolog subfamily 99.8 2.1E-21 7.1E-26 157.8 6.6 73 41-113 4-77 (79)
13 2cug_A Mkiaa0962 protein; DNAJ 99.8 2.8E-21 9.5E-26 160.5 7.3 73 40-112 13-85 (88)
14 2ej7_A HCG3 gene; HCG3 protein 99.8 2.8E-21 9.5E-26 158.2 6.2 73 42-114 7-81 (82)
15 2ctw_A DNAJ homolog subfamily 99.8 3E-21 1E-25 166.7 5.7 83 32-114 5-88 (109)
16 2dmx_A DNAJ homolog subfamily 99.8 4.3E-21 1.5E-25 160.6 6.4 76 42-117 7-84 (92)
17 2och_A Hypothetical protein DN 99.8 3.6E-21 1.2E-25 154.2 5.6 70 40-111 4-73 (73)
18 2o37_A Protein SIS1; HSP40, J- 99.8 2.3E-21 7.9E-26 162.4 4.3 74 40-115 4-77 (92)
19 2ctq_A DNAJ homolog subfamily 99.8 7.8E-21 2.7E-25 164.8 5.3 74 41-114 17-91 (112)
20 2lgw_A DNAJ homolog subfamily 99.8 8.7E-21 3E-25 161.1 5.1 73 44-116 2-76 (99)
21 2yua_A Williams-beuren syndrom 99.8 1.4E-20 4.7E-25 159.7 6.2 70 39-108 12-82 (99)
22 1wjz_A 1700030A21RIK protein; 99.8 6.5E-20 2.2E-24 153.7 5.3 69 42-110 14-89 (94)
23 3apq_A DNAJ homolog subfamily 99.8 1.4E-19 4.8E-24 171.4 6.9 89 44-138 2-91 (210)
24 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.4E-19 4.9E-24 156.0 3.3 72 40-111 11-87 (109)
25 2ys8_A RAB-related GTP-binding 99.7 7.8E-19 2.7E-23 146.5 6.0 64 41-104 24-87 (90)
26 2l6l_A DNAJ homolog subfamily 99.7 5.7E-18 1.9E-22 154.8 5.5 69 42-110 8-83 (155)
27 1gh6_A Large T antigen; tumor 99.7 1.2E-18 4E-23 151.6 0.1 66 42-110 6-73 (114)
28 1faf_A Large T antigen; J doma 99.7 6.8E-18 2.3E-22 137.5 3.7 67 43-113 10-78 (79)
29 2pf4_E Small T antigen; PP2A, 99.7 1.9E-18 6.6E-23 160.4 -1.0 66 42-110 9-76 (174)
30 1iur_A KIAA0730 protein; DNAJ 99.7 1.7E-17 5.7E-22 137.9 3.3 70 36-105 8-79 (88)
31 3hho_A CO-chaperone protein HS 99.6 5.8E-17 2E-21 151.0 4.8 67 42-108 2-76 (174)
32 3apo_A DNAJ homolog subfamily 99.6 2.3E-17 8E-22 184.6 -0.1 82 35-116 12-94 (780)
33 1n4c_A Auxilin; four helix bun 99.6 1.2E-16 4E-21 149.3 4.1 62 44-105 117-182 (182)
34 1fpo_A HSC20, chaperone protei 99.6 1.1E-16 3.9E-21 148.6 3.7 66 44-109 1-74 (171)
35 3bvo_A CO-chaperone protein HS 99.6 2.3E-16 8E-21 150.7 4.8 66 42-107 41-114 (207)
36 2qwo_B Putative tyrosine-prote 99.6 1.9E-16 6.4E-21 132.4 3.1 55 44-98 33-91 (92)
37 3ag7_A Putative uncharacterize 99.6 2.3E-16 8E-21 135.4 2.3 58 42-100 39-104 (106)
38 2guz_A Mitochondrial import in 99.6 9.2E-16 3.2E-20 122.3 3.8 58 43-103 13-71 (71)
39 3uo3_A J-type CO-chaperone JAC 99.6 5.6E-16 1.9E-20 145.2 2.7 65 42-108 9-80 (181)
40 2ctt_A DNAJ homolog subfamily 99.3 2.3E-12 7.8E-17 110.0 5.0 75 164-242 29-103 (104)
41 1nlt_A Protein YDJ1, mitochond 99.1 4.7E-11 1.6E-15 117.0 4.9 51 315-367 114-164 (248)
42 2y4t_A DNAJ homolog subfamily 99.0 1.5E-10 5E-15 117.5 5.3 65 43-107 381-449 (450)
43 1exk_A DNAJ protein; extended 99.0 6.7E-10 2.3E-14 89.6 6.5 66 165-234 13-78 (79)
44 2q2g_A HSP40 protein, heat sho 98.8 4.4E-09 1.5E-13 98.1 5.2 81 286-367 3-95 (180)
45 3lz8_A Putative chaperone DNAJ 98.8 9E-09 3.1E-13 104.7 7.4 83 284-367 138-234 (329)
46 1c3g_A Heat shock protein 40; 98.8 3.9E-09 1.3E-13 97.6 4.3 80 287-367 1-89 (170)
47 3agx_A DNAJ homolog subfamily 98.7 7E-09 2.4E-13 96.9 4.6 80 286-367 2-95 (181)
48 2guz_B Mitochondrial import in 98.5 7.9E-08 2.7E-12 75.0 4.2 51 45-98 5-58 (65)
49 3i38_A Putative chaperone DNAJ 97.6 7.5E-05 2.6E-09 63.9 5.8 44 237-282 39-82 (109)
50 1xao_A YDJ1, mitochondrial pro 97.5 6.6E-05 2.3E-09 65.4 4.2 46 236-281 34-81 (121)
51 3lcz_A YCZA, inhibitor of trap 97.4 3.4E-05 1.2E-09 57.6 1.1 30 206-235 9-38 (53)
52 1exk_A DNAJ protein; extended 97.4 8.4E-05 2.9E-09 59.4 3.4 47 178-233 9-63 (79)
53 2ctt_A DNAJ homolog subfamily 96.6 0.0013 4.6E-08 55.3 3.9 46 178-232 26-79 (104)
54 2bx9_A Anti-trap, AT, tryptoph 96.6 0.00082 2.8E-08 50.1 2.2 27 207-233 10-36 (53)
55 2bx9_A Anti-trap, AT, tryptoph 95.6 0.0054 1.8E-07 45.6 2.4 30 180-221 9-38 (53)
56 3lcz_A YCZA, inhibitor of trap 95.2 0.0088 3E-07 44.4 2.4 30 180-221 9-38 (53)
57 2pzi_A Probable serine/threoni 90.2 0.12 3.9E-06 56.7 2.7 50 39-95 624-675 (681)
58 3pmq_A Decaheme cytochrome C M 81.4 0.099 3.4E-06 57.5 -3.8 51 167-217 195-257 (669)
59 2qkd_A Zinc finger protein ZPR 41.6 41 0.0014 34.6 6.5 26 304-333 295-320 (404)
60 1ltl_A DNA replication initiat 32.9 1.3E+02 0.0043 29.0 8.2 32 182-217 136-167 (279)
61 1ltl_A DNA replication initiat 30.8 57 0.002 31.4 5.4 26 206-231 134-167 (279)
62 2cqn_A Formin-binding protein 28.7 43 0.0015 26.2 3.3 53 56-109 6-62 (77)
63 2vl6_A SSO MCM N-TER, minichro 26.6 2.4E+02 0.0081 26.7 8.9 66 202-274 164-234 (268)
64 2pk2_A Cyclin-T1, protein TAT; 25.9 48 0.0017 33.3 3.9 27 44-72 219-245 (358)
65 2qkd_A Zinc finger protein ZPR 25.9 1.5E+02 0.0052 30.4 7.7 37 180-216 220-259 (404)
66 3zxf_A Galectin-7; sugar bindi 25.7 87 0.003 26.8 5.1 43 316-358 9-59 (138)
67 1uzc_A Hypothetical protein FL 24.7 78 0.0027 24.4 4.0 53 55-109 11-66 (71)
68 3vkl_A Galectin-8; beta-sandwi 24.0 4.9E+02 0.017 25.0 13.0 122 238-359 19-211 (291)
69 2fiy_A Protein FDHE homolog; F 22.9 51 0.0017 32.6 3.3 52 179-230 181-232 (309)
70 1msz_A DNA-binding protein smu 22.7 57 0.0019 26.2 3.0 25 353-377 35-59 (86)
71 2b7e_A PRE-mRNA processing pro 22.4 58 0.002 24.3 2.8 49 59-109 3-56 (59)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=3.1e-61 Score=491.53 Aligned_cols=285 Identities=26% Similarity=0.456 Sum_probs=147.4
Q ss_pred cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCC-
Q 011450 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGL- 120 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~- 120 (485)
..+|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++|+||++|+.||+|+.....++++++
T Consensus 26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~ 105 (329)
T 3lz8_A 26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQR 105 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCccccc
Confidence 3489999999999999999999999999999999998888999999999999999999999999999544321111100
Q ss_pred ---CCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCcccccCCCCCcccccccCCCCCCCCCCcccCCCCCCCCeeeeeee
Q 011450 121 ---SNTSQGVDPFELYSAFFGGSDGLFGGVGEAGGINFNFGNKGNFGLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQR 197 (485)
Q Consensus 121 ---~~~~~~~dp~d~f~~fFgg~~g~fg~~g~~~g~~~~~~~~~~~~~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~ 197 (485)
+.+..+.++.|+|++|||+.+ .++ + ...+.++.|+. +.
T Consensus 106 ~~~~~~f~~~~f~diF~~~Fg~~g--~~~-----~-----~~~~~~g~Dl~------------------------~~--- 146 (329)
T 3lz8_A 106 QTHEQSYSQQDFDDIFSSMFGQQA--HQR-----R-----RQHAARGHDLE------------------------IE--- 146 (329)
T ss_dssp -------------------------------------------CCCCCCEE------------------------EE---
T ss_pred ccccCCcCCCchhhhhHhhhcCcC--CCC-----C-----CCCcCCCCCEE------------------------EE---
Confidence 001012245678888885420 000 0 00011222222 00
Q ss_pred cCCceeeeEeecccCCCCcEEEeecccccCCCcee--eeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEE
Q 011450 198 TPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEV--QSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALH 275 (485)
Q Consensus 198 ~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v--~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~ 275 (485)
..++....+.|..+.+...+..|.+.|.+ .+.++++|+||||+++|++|+|+|+|+++..++.+|||||+|+
T Consensus 147 ------l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~GDL~v~I~ 220 (329)
T 3lz8_A 147 ------VAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIH 220 (329)
T ss_dssp ------ECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCCCEEEEEC
T ss_pred ------EecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCCcEEEEEE
Confidence 01234455666666666555555555644 3468999999999999999999999999888899999999999
Q ss_pred eeccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEE
Q 011450 276 VDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVL 355 (485)
Q Consensus 276 v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~ 355 (485)
|+||+.|+|+|+||+++++|+|+||+||++++|+||||++.|+||+|+++|++++|+|+|||.. +.+|||||+|+|+
T Consensus 221 v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl~G~GmP~~---~~rGDL~v~~~V~ 297 (329)
T 3lz8_A 221 IAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK---THTGDLFAVIKIV 297 (329)
T ss_dssp CCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCS---SCBCCEEEEEEEC
T ss_pred EecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEEcCCCCCCC---CCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999975 3699999999999
Q ss_pred cCCCCChhHHHHHHHHHhh
Q 011450 356 IPKDISDPERALVEEIAFL 374 (485)
Q Consensus 356 ~P~~ls~~q~~ll~~l~~~ 374 (485)
+|+.|+++|+++|++|+++
T Consensus 298 ~P~~l~~~q~~~l~~~~~~ 316 (329)
T 3lz8_A 298 MPTKPDEKARELWQQLAAA 316 (329)
T ss_dssp CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999983
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=6.3e-49 Score=386.59 Aligned_cols=201 Identities=25% Similarity=0.498 Sum_probs=176.1
Q ss_pred cccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCcee-eeEeecccCCCCcEEE--eecccccCCCceeeeceEEEEE
Q 011450 165 LDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLI-SQVSTCSKCGGDGKII--IDHCRRCGGNGEVQSKRSMKVV 241 (485)
Q Consensus 165 ~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~-~~~~~C~~C~G~G~~i--~~~C~~C~G~G~v~~~k~l~V~ 241 (485)
.+-.|+|+|++++. ..+|+.|+|+|.++..++..+ ++ +..++|+.|+|+|+++ .+.|+.|+|.|++++.++++|+
T Consensus 40 ~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~ 117 (248)
T 1nlt_A 40 LCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVH 117 (248)
T ss_dssp ECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSS-EEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEE
T ss_pred eCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCc-eEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeeeEEEEEE
Confidence 45569999999887 599999999999988777776 44 4457999999999999 7889999999999999999999
Q ss_pred cCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeC
Q 011450 242 IPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIP 320 (485)
Q Consensus 242 IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip 320 (485)
|||||++|++|+|+|+|+++ .++.||||||+|+++||+.|+|+|+|||++++|||+||++|++++|+||||+ +.|+||
T Consensus 118 Ip~G~~~G~~ir~~g~G~~~-~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip 196 (248)
T 1nlt_A 118 VEPGMKDGQRIVFKGEADQA-PDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIV 196 (248)
T ss_dssp ECTTCCTTCEEEETTCSCCC-TTCBCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBC
T ss_pred ECCCccCCCEEEEeeeecCC-CCCCcceEEEEEEEecCccceeeCCEEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeC
Confidence 99999999999999999996 4569999999999999999999999999999999999999999999999996 899999
Q ss_pred CC--CCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCC--CChhHHHHHH
Q 011450 321 SG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKD--ISDPERALVE 369 (485)
Q Consensus 321 ~g--~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~--ls~~q~~ll~ 369 (485)
+| +++|++++|+|+|||..+++ .+|||||+|+|+||+. |+++|+++|+
T Consensus 197 ~g~vt~~g~~~rl~g~Gmp~~~~~-~~GDL~V~~~V~~P~~~~Ls~~q~~~l~ 248 (248)
T 1nlt_A 197 PGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKDPENHFTSEENLKKLE 248 (248)
T ss_dssp TTTTCSTTCEEEETTCSCBCSSSC-SBCCEEEEEEEECCC-------------
T ss_pred CCCeeCCCeEEEEcCCCCccCCCC-CcCCEEEEEEEECCCCCCCCHHHHHhhC
Confidence 99 99999999999999987654 6899999999999999 9999999875
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=4.4e-40 Score=309.27 Aligned_cols=162 Identities=20% Similarity=0.364 Sum_probs=148.4
Q ss_pred ccCCCCcEE--EeecccccCCCceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeecccccccccc
Q 011450 210 SKCGGDGKI--IIDHCRRCGGNGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGL 287 (485)
Q Consensus 210 ~~C~G~G~~--i~~~C~~C~G~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~ 287 (485)
..+.|.-+. +...|..|+|.|++++.++++|+||||+++|++|+|+|+|++++ ++.+|||||+|++++|+.|+|+|+
T Consensus 15 e~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~-~g~~GDl~v~i~~~~h~~F~R~G~ 93 (181)
T 3agx_A 15 EIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGS 93 (181)
T ss_dssp HHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCS-SSCCCCEEEEEEECCCSSCEEETT
T ss_pred HhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCC-CCCcccEEEEEEEeccccceeeCC
Confidence 334444333 34469999999999999999999999999999999999999976 679999999999999999999999
Q ss_pred ceEEEEEecchhhccCceEEEEccCCe-EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHH
Q 011450 288 NLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERA 366 (485)
Q Consensus 288 DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ 366 (485)
||+++++|||+||++|++++|+|+||+ +.|+||+++++|++++|+|+|||..++++.+|||||+|+|++|+.|+++|++
T Consensus 94 DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~ 173 (181)
T 3agx_A 94 DVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRT 173 (181)
T ss_dssp EEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHH
T ss_pred cEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHH
Confidence 999999999999999999999999995 8999999999999999999999987655679999999999999999999999
Q ss_pred HHHHHH
Q 011450 367 LVEEIA 372 (485)
Q Consensus 367 ll~~l~ 372 (485)
+|++|+
T Consensus 174 ~l~~~~ 179 (181)
T 3agx_A 174 VLEQVL 179 (181)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 999986
No 4
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2e-37 Score=290.87 Aligned_cols=143 Identities=22% Similarity=0.420 Sum_probs=136.7
Q ss_pred ceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEEE
Q 011450 230 GEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEVE 309 (485)
Q Consensus 230 G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~ 309 (485)
|++++.++++|+|||||++|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+||+++++|||+||++|++++|+
T Consensus 36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~ 115 (180)
T 2q2g_A 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVT 115 (180)
T ss_dssp EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEE
T ss_pred ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEee
Confidence 77888899999999999999999999999997778999999999999999999999999999999999999999999999
Q ss_pred ccCCe-EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHHHHH
Q 011450 310 TVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVEEIA 372 (485)
Q Consensus 310 tldG~-~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~~l~ 372 (485)
|+||+ +.|+||+++++|++++|+|+|||..++++.+|||||+|+|++|+.|+++|+++|++|+
T Consensus 116 tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~ 179 (180)
T 2q2g_A 116 TLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179 (180)
T ss_dssp CTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence 99995 8899999999999999999999987665679999999999999999999999999985
No 5
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=1.1e-36 Score=283.54 Aligned_cols=140 Identities=23% Similarity=0.464 Sum_probs=132.3
Q ss_pred CceeeeceEEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccccccccceEEEEEecchhhccCceEEE
Q 011450 229 NGEVQSKRSMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGIHRDGLNLFSKISVDYTEAILGTSMEV 308 (485)
Q Consensus 229 ~G~v~~~k~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V 308 (485)
.|.+ +.++++|+||||+.+|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+||+++++|||+||++|+++.|
T Consensus 30 ~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v 108 (170)
T 1c3g_A 30 HGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTI 108 (170)
T ss_dssp TTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHHHHCEEEEE
T ss_pred CCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHHhCCCeEEe
Confidence 3555 789999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred EccCCe-EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHHHH
Q 011450 309 ETVEGM-KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERALVE 369 (485)
Q Consensus 309 ~tldG~-~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~ll~ 369 (485)
+|+||+ +.|+||+++++|++++|+|+|||..++++.+|||||+|+|++|+.|+++|+++|+
T Consensus 109 ~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 170 (170)
T 1c3g_A 109 QTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 170 (170)
T ss_dssp ECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred eCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence 999996 8999999999999999999999987665678999999999999999999998873
No 6
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.93 E-value=9.8e-26 Score=194.94 Aligned_cols=96 Identities=22% Similarity=0.363 Sum_probs=90.7
Q ss_pred eccccccccccceEEEEEecchhhccCceEEEEccCCeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEc
Q 011450 277 DEKQGIHRDGLNLFSKISVDYTEAILGTSMEVETVEGMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLI 356 (485)
Q Consensus 277 ~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~ 356 (485)
+||+.|+|+|+||+++++|||.||++|++++|+|+||.+.|+||+|+++|++++|+|+|||. . +.+|||||+|+|++
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~-~--~~~GDL~v~~~V~~ 78 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS-K--THTGDLFAVIKIVM 78 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBC-S--SCBCCEEEEEEECC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCC-C--CCCcCEEEEEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999997 3 27999999999999
Q ss_pred CCCCChhHHHHHHHHHhhc
Q 011450 357 PKDISDPERALVEEIAFLK 375 (485)
Q Consensus 357 P~~ls~~q~~ll~~l~~~~ 375 (485)
|+.|+++|+++|++|+++.
T Consensus 79 P~~Ls~~q~~~l~~l~~~~ 97 (109)
T 3i38_A 79 PTKPDEKARELWQQLAAAE 97 (109)
T ss_dssp CSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999875
No 7
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.2e-23 Score=183.47 Aligned_cols=95 Identities=24% Similarity=0.360 Sum_probs=85.0
Q ss_pred cccccccceEEEEEecchhhccCceEEEEccCCe-EEEEeCCC--CCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcC
Q 011450 281 GIHRDGLNLFSKISVDYTEAILGTSMEVETVEGM-KDLRIPSG--VQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP 357 (485)
Q Consensus 281 ~F~R~G~DL~~~~~Isl~eAllG~~i~V~tldG~-~~l~Ip~g--~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P 357 (485)
.|+|+|+||+++++|+|.+|++|+++.|+|+||+ +.|+||+| +++|++++|+|+|||..+++ .+|||||+|+|++|
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~-~~GDL~V~~~V~~P 79 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYG-GYGNLIIKFTIKFP 79 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC-------CCCEEEEEEEECC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCC-CCCCEEEEEEEECC
Confidence 4899999999999999999999999999999997 89999999 99999999999999987654 68999999999999
Q ss_pred CC--CChhHHHHHHHHHhhcC
Q 011450 358 KD--ISDPERALVEEIAFLKS 376 (485)
Q Consensus 358 ~~--ls~~q~~ll~~l~~~~~ 376 (485)
+. |+++|+++|++|+....
T Consensus 80 ~~~~ls~~q~~~l~~l~~~~~ 100 (121)
T 1xao_A 80 ENHFTSEENLKKLEEILPPRI 100 (121)
T ss_dssp CTTCSCHHHHHHHHHHSCCCC
T ss_pred CCCCCCHHHHHHHHHHccccc
Confidence 99 99999999999986543
No 8
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.89 E-value=3.8e-24 Score=182.98 Aligned_cols=97 Identities=42% Similarity=0.710 Sum_probs=70.2
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCC
Q 011450 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLS 121 (485)
Q Consensus 43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~ 121 (485)
..|||+||||+++||.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||++|++++..+..+++
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~ 81 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG 81 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC----
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCC
Confidence 5799999999999999999999999999999999984 788999999999999999999999999999998875432211
Q ss_pred CCCCCCCchhhhhhhcCC
Q 011450 122 NTSQGVDPFELYSAFFGG 139 (485)
Q Consensus 122 ~~~~~~dp~d~f~~fFgg 139 (485)
+...++++.++|+.+|+.
T Consensus 82 ~~~~~~~~~~~f~~~f~~ 99 (103)
T 1bq0_A 82 GFGGGADFSDIFGDVFGD 99 (103)
T ss_dssp ------------------
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 111123556778888754
No 9
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.87 E-value=1.1e-22 Score=164.58 Aligned_cols=74 Identities=58% Similarity=1.024 Sum_probs=70.2
Q ss_pred cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCc
Q 011450 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~ 115 (485)
+..|||+||||+++||.+|||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.||++|++++.+
T Consensus 1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 74 (77)
T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77)
T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence 35799999999999999999999999999999999998889999999999999999999999999999987764
No 10
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4.1e-22 Score=165.58 Aligned_cols=77 Identities=47% Similarity=0.774 Sum_probs=71.6
Q ss_pred cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCcccC
Q 011450 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYD 118 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~ 118 (485)
...|||+||||+++|+.+|||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||++|++++.++.+
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~ 81 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKG 81 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCSSS
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccCCC
Confidence 46799999999999999999999999999999999998889999999999999999999999999999987765443
No 11
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=159.18 Aligned_cols=73 Identities=48% Similarity=0.837 Sum_probs=68.7
Q ss_pred ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCc
Q 011450 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (485)
Q Consensus 41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~ 113 (485)
....|||+||||+++|+.+|||+|||+|+++||||+++.+.+.++|++|++||++|+||.+|+.||++|+.+.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~ 76 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPS 76 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 3468999999999999999999999999999999999888899999999999999999999999999998653
No 12
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=157.84 Aligned_cols=73 Identities=51% Similarity=0.857 Sum_probs=67.7
Q ss_pred ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCc
Q 011450 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (485)
Q Consensus 41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~ 113 (485)
....|||+||||+++|+.+|||+|||+|+++||||+++ .+.+.++|++|++||++|+||.+|+.||++|..+.
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcCC
Confidence 34679999999999999999999999999999999997 47789999999999999999999999999997653
No 13
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2.8e-21 Score=160.55 Aligned_cols=73 Identities=49% Similarity=0.848 Sum_probs=68.9
Q ss_pred cccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccC
Q 011450 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAG 112 (485)
Q Consensus 40 ~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~ 112 (485)
.....|||+||||+++|+.+|||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||++|+.+
T Consensus 13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 3457899999999999999999999999999999999998889999999999999999999999999999754
No 14
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-21 Score=158.17 Aligned_cols=73 Identities=48% Similarity=0.817 Sum_probs=67.4
Q ss_pred cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--cHHHHHHHHHHHHhhhccccccchhccccccCcC
Q 011450 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--GAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~--~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~ 114 (485)
...|||+||||+++|+.+|||+|||+|+++||||+++.. .++++|++|++||++|+||.+|+.||++|+.++.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~~ 81 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSS 81 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSCC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccccC
Confidence 457999999999999999999999999999999999753 6788999999999999999999999999987654
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=3e-21 Score=166.72 Aligned_cols=83 Identities=46% Similarity=0.780 Sum_probs=74.4
Q ss_pred cccccccccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ccHHHHHHHHHHHHhhhccccccchhccccc
Q 011450 32 RSHRRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-PGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (485)
Q Consensus 32 ~~~~~~~~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~ 110 (485)
++++...+.....|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|.
T Consensus 5 ~s~~~r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 5 SSGRQRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp SCCCCCCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCCCcccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 344555566778999999999999999999999999999999999974 6789999999999999999999999999998
Q ss_pred cCcC
Q 011450 111 AGIT 114 (485)
Q Consensus 111 ~~~~ 114 (485)
.++.
T Consensus 85 ~~~~ 88 (109)
T 2ctw_A 85 LGLY 88 (109)
T ss_dssp HHHH
T ss_pred cccc
Confidence 7654
No 16
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-21 Score=160.57 Aligned_cols=76 Identities=47% Similarity=0.713 Sum_probs=69.5
Q ss_pred cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchhccccccCcCccc
Q 011450 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEY 117 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~ 117 (485)
...|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||++|.+++..++
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~ 84 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAGG 84 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCCC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCCC
Confidence 34799999999999999999999999999999999975 36789999999999999999999999999998876543
No 17
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.83 E-value=3.6e-21 Score=154.24 Aligned_cols=70 Identities=50% Similarity=0.823 Sum_probs=62.8
Q ss_pred cccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhcccccc
Q 011450 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (485)
Q Consensus 40 ~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~ 111 (485)
|....|||+||||+++|+.+|||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||++|++
T Consensus 4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 4567899999999999999999999999999999999964 468999999999999999999999999863
No 18
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.3e-21 Score=162.38 Aligned_cols=74 Identities=46% Similarity=0.728 Sum_probs=67.8
Q ss_pred cccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCcCc
Q 011450 40 RAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITG 115 (485)
Q Consensus 40 ~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~ 115 (485)
|....|||+||||+++|+.+|||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||++|++++..
T Consensus 4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPT--GDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTT--CCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--ChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 346789999999999999999999999999999999995 34679999999999999999999999999887764
No 19
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.8e-21 Score=164.83 Aligned_cols=74 Identities=27% Similarity=0.557 Sum_probs=69.1
Q ss_pred ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcC
Q 011450 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGIT 114 (485)
Q Consensus 41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~ 114 (485)
....|||+||||+++|+.+|||+|||+|+++||||+++ ++.++++|++|++||++|+||.+|+.||++|++++.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 45689999999999999999999999999999999998 578999999999999999999999999999987653
No 20
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=8.7e-21 Score=161.13 Aligned_cols=73 Identities=49% Similarity=0.875 Sum_probs=64.6
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchhccccccCcCcc
Q 011450 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGE 116 (485)
Q Consensus 44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~ 116 (485)
+|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||++|+||.+|+.||++|.+++.+.
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~~ 76 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGT 76 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence 599999999999999999999999999999999975 3478999999999999999999999999998877643
No 21
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=159.75 Aligned_cols=70 Identities=40% Similarity=0.525 Sum_probs=65.0
Q ss_pred ccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccc
Q 011450 39 IRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (485)
Q Consensus 39 ~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~ 108 (485)
......|||+||||+++|+.+|||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||+.
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 3456789999999999999999999999999999999997 577899999999999999999999999984
No 22
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.78 E-value=6.5e-20 Score=153.72 Aligned_cols=69 Identities=32% Similarity=0.580 Sum_probs=63.9
Q ss_pred cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------ccHHHHHHHHHHHHhhhccccccchhccccc
Q 011450 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS-------PGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~-------~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~ 110 (485)
...|||+||||+++|+.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++..
T Consensus 14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 46899999999999999999999999999999999863 4678999999999999999999999998654
No 23
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.78 E-value=1.4e-19 Score=171.44 Aligned_cols=89 Identities=38% Similarity=0.711 Sum_probs=76.3
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCcCcccCCCCC
Q 011450 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGITGEYDGLSN 122 (485)
Q Consensus 44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~~~~~~~~~~ 122 (485)
.|||++|||+++|+.+|||+|||+||++||||+++ ++++.++|++|++||++|+||.+|+.||++|++++....+
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~---- 77 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQG---- 77 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTCS----
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccccc----
Confidence 58999999999999999999999999999999996 5789999999999999999999999999999988764432
Q ss_pred CCCCCCchhhhhhhcC
Q 011450 123 TSQGVDPFELYSAFFG 138 (485)
Q Consensus 123 ~~~~~dp~d~f~~fFg 138 (485)
.....+.+|...|+
T Consensus 78 --~~~~~~~~~~~~fg 91 (210)
T 3apq_A 78 --GQYESWSYYRYDFG 91 (210)
T ss_dssp --CCCCCHHHHHHSSS
T ss_pred --cccccccccccccc
Confidence 12345666666653
No 24
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.76 E-value=1.4e-19 Score=155.96 Aligned_cols=72 Identities=39% Similarity=0.597 Sum_probs=66.5
Q ss_pred cccCCCcchhccCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----ccHHHHHHHHHHHHhhhccccccchhcccccc
Q 011450 40 RAAGTDYYSTLNVRQNA-TLQEIKTSYRKLARKYHPDINKS----PGAEEKFKEISSAYEVLSDDEKRSVYDRFGEA 111 (485)
Q Consensus 40 ~~~~~d~Y~iLgv~~~A-s~~eIk~AYr~la~k~HPD~n~~----~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~ 111 (485)
+....|||+||||+++| +.+|||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||+++..
T Consensus 11 ~~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred HcCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 34578999999999999 99999999999999999999975 56889999999999999999999999998854
No 25
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-19 Score=146.47 Aligned_cols=64 Identities=33% Similarity=0.515 Sum_probs=60.9
Q ss_pred ccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccch
Q 011450 41 AAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSV 104 (485)
Q Consensus 41 ~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~ 104 (485)
....|||+||||+++|+.+|||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.
T Consensus 24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 3568999999999999999999999999999999999988999999999999999999999875
No 26
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-18 Score=154.76 Aligned_cols=69 Identities=32% Similarity=0.574 Sum_probs=63.1
Q ss_pred cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------cHHHHHHHHHHHHhhhccccccchhccccc
Q 011450 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP-------GAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~-------~a~e~F~~I~~AYevLsDp~kR~~YD~~G~ 110 (485)
...|||+||||+++|+.+|||+|||+|+++||||+++.. .|.++|++|++||++|+||.+|+.||..+.
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 457999999999999999999999999999999999754 267899999999999999999999998653
No 27
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.70 E-value=1.2e-18 Score=151.59 Aligned_cols=66 Identities=24% Similarity=0.415 Sum_probs=61.5
Q ss_pred cCCCcchhccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccc
Q 011450 42 AGTDYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As~--~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~ 110 (485)
...|||+||||+++|+. +|||+|||+||++||||++++ .++|++|++||++|+||.+|+.||.+|.
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 34799999999999999 999999999999999999965 4799999999999999999999999875
No 28
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.69 E-value=6.8e-18 Score=137.48 Aligned_cols=67 Identities=13% Similarity=0.297 Sum_probs=60.4
Q ss_pred CCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccccCc
Q 011450 43 GTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (485)
Q Consensus 43 ~~d~Y~iLgv~~~--As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~ 113 (485)
..++|+||||+++ |+.+|||+|||+||++||||++. +.++|++|++||++|+|+.+|.. |.||.+++
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~---~~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~~ 78 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG---SHALMQELNSLWGTFKTEVYNLR-MNLGGTGF 78 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC---CHHHHHHHHHHHHHHHHHHHHHT-TCCSSCCC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CHHHHHHHHHHHHHHhhHHHHHH-HhcCCccC
Confidence 4689999999999 99999999999999999999984 46899999999999999999988 56887653
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.68 E-value=1.9e-18 Score=160.35 Aligned_cols=66 Identities=24% Similarity=0.452 Sum_probs=58.9
Q ss_pred cCCCcchhccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccccc
Q 011450 42 AGTDYYSTLNVRQNAT--LQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRFGE 110 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As--~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~ 110 (485)
...|||++|||+++|+ .+|||+|||+||+++|||++++ +++|++|++||++|+||.+|+.||+||.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 4579999999999999 6999999999999999999965 3789999999999999999999999995
No 30
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.67 E-value=1.7e-17 Score=137.92 Aligned_cols=70 Identities=21% Similarity=0.135 Sum_probs=60.9
Q ss_pred cccccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHhhhccccccchh
Q 011450 36 RGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKS--PGAEEKFKEISSAYEVLSDDEKRSVY 105 (485)
Q Consensus 36 ~~~~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~--~~a~e~F~~I~~AYevLsDp~kR~~Y 105 (485)
.+.......++|+||||+++||.+|||+|||+||++||||+|++ +.++++|++|++||++|+|...|..+
T Consensus 8 ~~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~ 79 (88)
T 1iur_A 8 LVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN 79 (88)
T ss_dssp CCCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred CCCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 33444556899999999999999999999999999999999986 35889999999999999998887443
No 31
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.65 E-value=5.8e-17 Score=150.98 Aligned_cols=67 Identities=21% Similarity=0.397 Sum_probs=60.5
Q ss_pred cCCCcchhccCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHHHHhhhccccccchhccc
Q 011450 42 AGTDYYSTLNVRQNAT--LQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDRF 108 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As--~~eIk~AYr~la~k~HPD~n~~~~------a~e~F~~I~~AYevLsDp~kR~~YD~~ 108 (485)
...|||++|||+++|+ .++||+|||+|+++||||+++... +.++|+.|++||++|+||.+|+.||..
T Consensus 2 ~~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp --CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 3579999999999998 999999999999999999997543 678999999999999999999999973
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.63 E-value=2.3e-17 Score=184.64 Aligned_cols=82 Identities=38% Similarity=0.683 Sum_probs=40.9
Q ss_pred ccccccccCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHhhhccccccchhccccccCc
Q 011450 35 RRGMIRAAGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINK-SPGAEEKFKEISSAYEVLSDDEKRSVYDRFGEAGI 113 (485)
Q Consensus 35 ~~~~~~~~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~-~~~a~e~F~~I~~AYevLsDp~kR~~YD~~G~~~~ 113 (485)
+.+.....+.|||++|||+++||.+|||+|||+||++||||+|+ ++.+.++|++|++||++|+||.+|+.||+||++++
T Consensus 12 ~~~~~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~ 91 (780)
T 3apo_A 12 SGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL 91 (780)
T ss_dssp -----------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred CCCCCCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence 34445566799999999999999999999999999999999996 57789999999999999999999999999999887
Q ss_pred Ccc
Q 011450 114 TGE 116 (485)
Q Consensus 114 ~~~ 116 (485)
..+
T Consensus 92 ~~~ 94 (780)
T 3apo_A 92 EDN 94 (780)
T ss_dssp ---
T ss_pred ccC
Confidence 654
No 33
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.62 E-value=1.2e-16 Score=149.27 Aligned_cols=62 Identities=21% Similarity=0.393 Sum_probs=58.6
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----HHHHHHHHHHHHhhhccccccchh
Q 011450 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSPG----AEEKFKEISSAYEVLSDDEKRSVY 105 (485)
Q Consensus 44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~~----a~e~F~~I~~AYevLsDp~kR~~Y 105 (485)
.|||++|||+++|+.+|||+|||+||++||||+++... |+++|++|++||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 69999999999999999999999999999999997543 789999999999999999999988
No 34
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.62 E-value=1.1e-16 Score=148.58 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=60.2
Q ss_pred CCcchhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHHHHhhhccccccchhcccc
Q 011450 44 TDYYSTLNVRQNA--TLQEIKTSYRKLARKYHPDINKSPG------AEEKFKEISSAYEVLSDDEKRSVYDRFG 109 (485)
Q Consensus 44 ~d~Y~iLgv~~~A--s~~eIk~AYr~la~k~HPD~n~~~~------a~e~F~~I~~AYevLsDp~kR~~YD~~G 109 (485)
.|||++|||++++ |.++||+|||+|+++||||+++... |.++|+.|++||++|+||.+|+.||...
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 3899999999999 9999999999999999999997532 4579999999999999999999999853
No 35
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.61 E-value=2.3e-16 Score=150.71 Aligned_cols=66 Identities=23% Similarity=0.400 Sum_probs=59.7
Q ss_pred cCCCcchhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------cHHHHHHHHHHHHhhhccccccchhcc
Q 011450 42 AGTDYYSTLNVRQN--ATLQEIKTSYRKLARKYHPDINKSP------GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~--As~~eIk~AYr~la~k~HPD~n~~~------~a~e~F~~I~~AYevLsDp~kR~~YD~ 107 (485)
...|||++|||+++ ++.++||+|||+|+++||||+++.. .|.++|++|++||++|+||.+|+.||.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 35799999999987 7999999999999999999999753 256789999999999999999999995
No 36
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.60 E-value=1.9e-16 Score=132.41 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=51.0
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----cHHHHHHHHHHHHhhhcc
Q 011450 44 TDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSD 98 (485)
Q Consensus 44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~----~a~e~F~~I~~AYevLsD 98 (485)
.++|++|||+++||.+|||+|||+||++||||+|++. .|+++|++|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999753 278899999999999975
No 37
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.59 E-value=2.3e-16 Score=135.39 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=52.3
Q ss_pred cCCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------cHHHHHHHHHHHHhhhcccc
Q 011450 42 AGTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP--------GAEEKFKEISSAYEVLSDDE 100 (485)
Q Consensus 42 ~~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~--------~a~e~F~~I~~AYevLsDp~ 100 (485)
.+.|||++||++. ||.+|||+|||+||++||||+|+++ .|+++|++|++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 4579999999996 9999999999999999999998632 36889999999999999985
No 38
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.57 E-value=9.2e-16 Score=122.27 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=52.6
Q ss_pred CCCcchhccCCC-CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccc
Q 011450 43 GTDYYSTLNVRQ-NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRS 103 (485)
Q Consensus 43 ~~d~Y~iLgv~~-~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~ 103 (485)
..++|+||||++ +||.+|||+|||+|+++||||++ ++.++|++|++||++|+|+..|+
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~---g~~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKG---GSPFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT---CCHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHhhhhhcC
Confidence 369999999999 79999999999999999999997 34579999999999999987764
No 39
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.56 E-value=5.6e-16 Score=145.15 Aligned_cols=65 Identities=23% Similarity=0.437 Sum_probs=59.3
Q ss_pred cCCCcchhc------cCCC-CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhccccccchhccc
Q 011450 42 AGTDYYSTL------NVRQ-NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSDDEKRSVYDRF 108 (485)
Q Consensus 42 ~~~d~Y~iL------gv~~-~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsDp~kR~~YD~~ 108 (485)
..+|||++| |+++ +|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||..
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 347999999 4665 8999999999999999999999975 778999999999999999999999983
No 40
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=109.95 Aligned_cols=75 Identities=33% Similarity=0.647 Sum_probs=65.8
Q ss_pred ccccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEEc
Q 011450 164 GLDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVVI 242 (485)
Q Consensus 164 ~~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~I 242 (485)
..+-.|+|+|++++....+|+.|+|+|.+...+ |+|++.++|+.|+|+|+++.++|+.|+|.|++++.++|+|+|
T Consensus 29 ~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~----G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 29 DTCERCNGKGNEPGTKVQHCHYCGGSGMETINT----GPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp EECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE----TTEEEEEECSSSSSSSEECSSCCSSSSSCSEECCCCSSCCSC
T ss_pred eECCCCcCCccCCCCCCccCCCCCCCEEEEEEe----CCEEEEEECCcCCCcceECCCcCCCCCCeeEEEEEEEEEEEc
Confidence 455569999999988889999999999876543 567778899999999999999999999999999999988876
No 41
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.09 E-value=4.7e-11 Score=117.00 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=44.3
Q ss_pred EEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcCCCCChhHHHH
Q 011450 315 KDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIPKDISDPERAL 367 (485)
Q Consensus 315 ~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P~~ls~~q~~l 367 (485)
++|+||+|+.+|++|+++|+|-+..+ +..|||||+|+|.-++.|..+..+|
T Consensus 114 l~V~Ip~G~~~G~~ir~~g~G~~~~~--g~~GDl~v~i~v~~h~~F~R~G~DL 164 (248)
T 1nlt_A 114 LEVHVEPGMKDGQRIVFKGEADQAPD--VIPGDVVFIVSERPHKSFKRDGDDL 164 (248)
T ss_dssp EEEEECTTCCTTCEEEETTCSCCCTT--CBCCCEEEEEEECCCSSCEEETTEE
T ss_pred EEEEECCCccCCCEEEEeeeecCCCC--CCcceEEEEEEEecCccceeeCCEE
Confidence 68999999999999999999998643 3689999999999888888776554
No 42
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.02 E-value=1.5e-10 Score=117.55 Aligned_cols=65 Identities=49% Similarity=0.714 Sum_probs=56.3
Q ss_pred CCCcchhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----cHHHHHHHHHHHHhhhccccccchhcc
Q 011450 43 GTDYYSTLNVRQNATLQEIKTSYRKLARKYHPDINKSP----GAEEKFKEISSAYEVLSDDEKRSVYDR 107 (485)
Q Consensus 43 ~~d~Y~iLgv~~~As~~eIk~AYr~la~k~HPD~n~~~----~a~e~F~~I~~AYevLsDp~kR~~YD~ 107 (485)
..++|.+||+.+.++.++|+++|+++++++|||+.+.+ .++++|++|.+||++|+||++|+.||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 46999999999999999999999999999999999764 388999999999999999999999996
No 43
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.97 E-value=6.7e-10 Score=89.61 Aligned_cols=66 Identities=38% Similarity=0.784 Sum_probs=56.2
Q ss_pred cccccCCCCCCCCCCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCceeee
Q 011450 165 LDIRCGGTGAKSSNCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQS 234 (485)
Q Consensus 165 ~di~C~GtG~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~ 234 (485)
..-.|+|+|+.......+|+.|+|+|.++..+ |+++...+|+.|+|.|+++.+.|+.|+|.|++.+
T Consensus 13 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~~ 78 (79)
T 1exk_A 13 ECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER 78 (79)
T ss_dssp ECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE----TTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred ECCCCcccccCCCccCCCCCCCcCeEEEEEEc----CCCEEeeECcCCCCccEECCCcCCCCCCeEEEee
Confidence 44459999998777778999999999877643 6677778999999999999999999999998753
No 44
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.77 E-value=4.4e-09 Score=98.12 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=67.4
Q ss_pred ccceEEEEEecchhhccCceEEEEccC------------CeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEE
Q 011450 286 GLNLFSKISVDYTEAILGTSMEVETVE------------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVN 353 (485)
Q Consensus 286 G~DL~~~~~Isl~eAllG~~i~V~tld------------G~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~ 353 (485)
|.|+.+++.|||.||+.|++++|.... ..++|+||+|+.+|++++++|+|-+... .+..|||||+|+
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~-gg~~GDl~v~i~ 81 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESP-GTSPGDLVLIIQ 81 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTEEEEEEEEEEEEECTTCCTTCEEEETTCSCCSST-TSCCCEEEEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCC-CCccccEEEEEE
Confidence 789999999999999999998887432 2378999999999999999999987322 257899999999
Q ss_pred EEcCCCCChhHHHH
Q 011450 354 VLIPKDISDPERAL 367 (485)
Q Consensus 354 V~~P~~ls~~q~~l 367 (485)
+.-++.|..+..+|
T Consensus 82 ~~~h~~F~R~G~DL 95 (180)
T 2q2g_A 82 TKTHPRFTRDDCHL 95 (180)
T ss_dssp ECCCSSCEEETTEE
T ss_pred EEecccEEEcCCEE
Confidence 99888888776544
No 45
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.76 E-value=9e-09 Score=104.70 Aligned_cols=83 Identities=19% Similarity=0.300 Sum_probs=63.4
Q ss_pred ccccceEEEEEecchhhccCceEEEEcc------C--------CeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEE
Q 011450 284 RDGLNLFSKISVDYTEAILGTSMEVETV------E--------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHL 349 (485)
Q Consensus 284 R~G~DL~~~~~Isl~eAllG~~i~V~tl------d--------G~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~ 349 (485)
++|.||++++.|+|.||+.|.+..|... . ..++|+||+|+++|++|+++|+|.|...+ +.+||||
T Consensus 138 ~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~g-g~~GDL~ 216 (329)
T 3lz8_A 138 ARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENG-GPNGDLW 216 (329)
T ss_dssp CCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC----CCCCCEE
T ss_pred CCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCC-CCCCcEE
Confidence 4677788888888888888876655432 2 23689999999999999999999987543 5689999
Q ss_pred EEEEEEcCCCCChhHHHH
Q 011450 350 FIVNVLIPKDISDPERAL 367 (485)
Q Consensus 350 V~~~V~~P~~ls~~q~~l 367 (485)
|+|+|.-++.+..+..+|
T Consensus 217 v~I~v~~h~~F~R~G~DL 234 (329)
T 3lz8_A 217 LVIHIAPHPLFDIVGHNL 234 (329)
T ss_dssp EEECCCCCSSCEEETTEE
T ss_pred EEEEEecCCccEEcCCcE
Confidence 999999888776665443
No 46
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.75 E-value=3.9e-09 Score=97.62 Aligned_cols=80 Identities=11% Similarity=0.197 Sum_probs=66.8
Q ss_pred cceEEEEEecchhhccCceEEEEccC---------CeEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEEEEEEcC
Q 011450 287 LNLFSKISVDYTEAILGTSMEVETVE---------GMKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFIVNVLIP 357 (485)
Q Consensus 287 ~DL~~~~~Isl~eAllG~~i~V~tld---------G~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~~~V~~P 357 (485)
.|+.+++.|||.||+.|++++|.... ..++|+||+|+.+|++++++|+|-+...+ +.+|||||+|++.-+
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g-g~~GDl~v~i~v~~h 79 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQT-GRRKTLQFVIQEKSH 79 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSS-SCBCEEEEEEEECCC
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCccCCCEEEEeccccCCCCC-CccccEEEEEEEccC
Confidence 38999999999999999998887541 23789999999999999999999865433 578999999999988
Q ss_pred CCCChhHHHH
Q 011450 358 KDISDPERAL 367 (485)
Q Consensus 358 ~~ls~~q~~l 367 (485)
+.|..+..+|
T Consensus 80 ~~F~R~G~DL 89 (170)
T 1c3g_A 80 PNFKRDGDDL 89 (170)
T ss_dssp SSEEEETTEE
T ss_pred CccEEeCCcE
Confidence 8877665544
No 47
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.71 E-value=7e-09 Score=96.87 Aligned_cols=80 Identities=13% Similarity=0.246 Sum_probs=64.7
Q ss_pred ccceEEEEEecchhhccCceEEEEcc------CC--------eEEEEeCCCCCCCCEEEEcCCCCCCCCCCCCCccEEEE
Q 011450 286 GLNLFSKISVDYTEAILGTSMEVETV------EG--------MKDLRIPSGVQPGDTVKLQQMGVPDINNPSVRGDHLFI 351 (485)
Q Consensus 286 G~DL~~~~~Isl~eAllG~~i~V~tl------dG--------~~~l~Ip~g~q~G~~irl~g~G~P~~~~~~~rGDL~V~ 351 (485)
|.|+.+++.|||.||+.|++++|... .| .++|+||+|+.+|++++++|+|-+..+ +.+|||||+
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~--g~~GDl~v~ 79 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN--NIPADIVFV 79 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSS--SCCCCEEEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCceEEEEeEEEEEEECCCccCCcEEEEeeccccCCC--CCcccEEEE
Confidence 57899999999999999999887643 23 268999999999999999999998653 478999999
Q ss_pred EEEEcCCCCChhHHHH
Q 011450 352 VNVLIPKDISDPERAL 367 (485)
Q Consensus 352 ~~V~~P~~ls~~q~~l 367 (485)
|++.-++.|..+..+|
T Consensus 80 i~~~~h~~F~R~G~DL 95 (181)
T 3agx_A 80 LKDKPHNIFKRDGSDV 95 (181)
T ss_dssp EEECCCSSCEEETTEE
T ss_pred EEEeccccceeeCCcE
Confidence 9999988888776544
No 48
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.49 E-value=7.9e-08 Score=75.00 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=44.5
Q ss_pred CcchhccCCCC---CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhhhcc
Q 011450 45 DYYSTLNVRQN---ATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEVLSD 98 (485)
Q Consensus 45 d~Y~iLgv~~~---As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYevLsD 98 (485)
+-|.||||+++ ++.++|++|||+|....|||+.. ..-....|++|++.|..
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG---S~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG---SFYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHHHH
Confidence 45889999999 99999999999999999999974 44566889999999864
No 49
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=97.59 E-value=7.5e-05 Score=63.88 Aligned_cols=44 Identities=27% Similarity=0.594 Sum_probs=37.8
Q ss_pred EEEEEcCCCCCCCCEEEEccccCCCCCCCCCccEEEEEEeeccccc
Q 011450 237 SMKVVIPPGVSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQGI 282 (485)
Q Consensus 237 ~l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~F 282 (485)
.++|.||+|+++|++++++|+|.+. .+ ..|||||+++|.-....
T Consensus 39 ~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~L 82 (109)
T 3i38_A 39 SILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKP 82 (109)
T ss_dssp CEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSC
T ss_pred CEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCC
Confidence 4789999999999999999999986 33 79999999999855443
No 50
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=97.50 E-value=6.6e-05 Score=65.36 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=36.2
Q ss_pred eEEEEEcCCC--CCCCCEEEEccccCCCCCCCCCccEEEEEEeecccc
Q 011450 236 RSMKVVIPPG--VSNGATMQIRGEGNFDRRRSLAGDLFVALHVDEKQG 281 (485)
Q Consensus 236 k~l~V~IP~G--v~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I~v~~h~~ 281 (485)
+.++|.||+| +++|++++++|+|.+...+...|||||+++|.-...
T Consensus 34 ~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~ 81 (121)
T 1xao_A 34 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPEN 81 (121)
T ss_dssp CEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCT
T ss_pred CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCC
Confidence 5688999999 999999999999997644446899999999986554
No 51
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.41 E-value=3.4e-05 Score=57.57 Aligned_cols=30 Identities=30% Similarity=0.798 Sum_probs=26.6
Q ss_pred EeecccCCCCcEEEeecccccCCCceeeec
Q 011450 206 VSTCSKCGGDGKIIIDHCRRCGGNGEVQSK 235 (485)
Q Consensus 206 ~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~ 235 (485)
.++|+.|+|+|+++.++|+.|+|.|++.+.
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVILTA 38 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence 578999999999999999999999987654
No 52
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.40 E-value=8.4e-05 Score=59.41 Aligned_cols=47 Identities=30% Similarity=0.824 Sum_probs=36.9
Q ss_pred CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCceee
Q 011450 178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEVQ 233 (485)
Q Consensus 178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v~ 233 (485)
.....|+.|+|+|.... ....+|+.|+|+|.++. ..|+.|+|.|.+.
T Consensus 9 ~~~~~C~~C~G~G~~~~---------~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 9 PTLEECDVCHGSGAKPG---------TQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI 63 (79)
T ss_dssp CCEEECGGGTTTSBCSS---------SCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC
T ss_pred ccceECCCCcccccCCC---------ccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC
Confidence 45679999999997431 11368999999998864 4799999999764
No 53
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.61 E-value=0.0013 Score=55.33 Aligned_cols=46 Identities=43% Similarity=1.029 Sum_probs=35.0
Q ss_pred CCcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEe--------ecccccCCCcee
Q 011450 178 NCIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIII--------DHCRRCGGNGEV 232 (485)
Q Consensus 178 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~--------~~C~~C~G~G~v 232 (485)
.....|+.|+|+|..... ...+|+.|+|+|.+.. ..|+.|+|.|.+
T Consensus 26 ~~~~~C~~C~G~G~~~g~---------~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~ 79 (104)
T 2ctt_A 26 NIMDTCERCNGKGNEPGT---------KVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSI 79 (104)
T ss_dssp SCCEECSSSSSSSSCTTC---------CCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEE
T ss_pred eeeeECCCCcCCccCCCC---------CCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceE
Confidence 456789999999974211 1358999999997643 359999999975
No 54
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.61 E-value=0.00082 Score=50.06 Aligned_cols=27 Identities=33% Similarity=0.779 Sum_probs=17.0
Q ss_pred eecccCCCCcEEEeecccccCCCceee
Q 011450 207 STCSKCGGDGKIIIDHCRRCGGNGEVQ 233 (485)
Q Consensus 207 ~~C~~C~G~G~~i~~~C~~C~G~G~v~ 233 (485)
.+|+.|+|+|.++...|+.|+|.|.+.
T Consensus 10 ~~C~~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 10 VACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred ccCCCCcceeccCCCCCccCCCCccEE
Confidence 456666666666655666666666553
No 55
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=95.64 E-value=0.0054 Score=45.59 Aligned_cols=30 Identities=27% Similarity=0.677 Sum_probs=24.1
Q ss_pred cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEee
Q 011450 180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID 221 (485)
Q Consensus 180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~ 221 (485)
..+|+.|+|+|.++. .+|+.|+|.|.++..
T Consensus 9 ~~~C~~C~GsG~~~~------------~~C~~C~G~G~v~~~ 38 (53)
T 2bx9_A 9 EVACPKCERAGEIEG------------TPCPACSGKGVILTA 38 (53)
T ss_dssp EEECTTTTTSSEETT------------EECTTTTTSSEEECH
T ss_pred cccCCCCcceeccCC------------CCCccCCCCccEEEE
Confidence 458999999998641 579999999998763
No 56
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=95.24 E-value=0.0088 Score=44.43 Aligned_cols=30 Identities=33% Similarity=0.716 Sum_probs=24.1
Q ss_pred cccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEee
Q 011450 180 IQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIID 221 (485)
Q Consensus 180 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~ 221 (485)
..+|+.|+|+|.++. .+|+.|+|.|.+...
T Consensus 9 ~~~C~~C~GsG~~i~------------~~C~~C~G~G~v~~~ 38 (53)
T 3lcz_A 9 ETTCPNCNGSGREEP------------EPCPKCLGKGVILTA 38 (53)
T ss_dssp EEECTTTTTSCEETT------------EECTTTTTSSEEECH
T ss_pred eccCcCCcccccCCC------------CcCCCCCCcEEEEEE
Confidence 358999999998653 479999999987553
No 57
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.24 E-value=0.12 Score=56.66 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=39.8
Q ss_pred ccccCCCcchhccCCCCCCH--HHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHhh
Q 011450 39 IRAAGTDYYSTLNVRQNATL--QEIKTSYRKLARKYHPDINKSPGAEEKFKEISSAYEV 95 (485)
Q Consensus 39 ~~~~~~d~Y~iLgv~~~As~--~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~~AYev 95 (485)
+....+|||.+||++.++.. .+|++|||+||+..+++ .+++..|..|+.|
T Consensus 624 ~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 624 LKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV 675 (681)
T ss_dssp HTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred HHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence 34567789999999776655 67999999999975544 4789999999876
No 58
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=81.35 E-value=0.099 Score=57.50 Aligned_cols=51 Identities=18% Similarity=0.383 Sum_probs=31.5
Q ss_pred cccCCCCCCCCC---CcccCCCCCCCCeeee--------eeecCCcee-eeEeecccCCCCcE
Q 011450 167 IRCGGTGAKSSN---CIQSCKACWGRGGVLK--------TQRTPFGLI-SQVSTCSKCGGDGK 217 (485)
Q Consensus 167 i~C~GtG~~~~~---~~~~C~~C~G~G~~~~--------~~~~~~g~~-~~~~~C~~C~G~G~ 217 (485)
..|+|+|++.+. .+.+|++|+|+..... ......|.| +....|..||..+.
T Consensus 195 ~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~~C~~CH~~~~ 257 (669)
T 3pmq_A 195 NSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSISNCQTCHADNP 257 (669)
T ss_dssp HHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTTCCTTTSCCCT
T ss_pred CCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccCcchhhcCCcc
Confidence 349999999887 6789999999942110 001111222 22357888887764
No 59
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=41.61 E-value=41 Score=34.65 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=18.8
Q ss_pred ceEEEEccCCeEEEEeCCCCCCCCEEEEcC
Q 011450 304 TSMEVETVEGMKDLRIPSGVQPGDTVKLQQ 333 (485)
Q Consensus 304 ~~i~V~tldG~~~l~Ip~g~q~G~~irl~g 333 (485)
+++.||-| .+.||||++.|..-.|.|
T Consensus 295 a~i~IPEL----~lei~pg~~~G~~TTVEG 320 (404)
T 2qkd_A 295 CSVEIPEL----EFELGMAVLGGKFTTLEG 320 (404)
T ss_dssp CEEEEGGG----TEEECTTTTCSEEEEHHH
T ss_pred eEEEeeee----eEEecCCCCCceEEeHHH
Confidence 45667765 488999988777776655
No 60
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=32.90 E-value=1.3e+02 Score=28.96 Aligned_cols=32 Identities=28% Similarity=0.693 Sum_probs=16.8
Q ss_pred cCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcE
Q 011450 182 SCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGK 217 (485)
Q Consensus 182 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~ 217 (485)
.|..|+.... +....+.+.....|+.|.+.|.
T Consensus 136 ~C~~C~~~~~----v~~~~~~~~~P~~Cp~C~~~~f 167 (279)
T 1ltl_A 136 ECRGCMRHHA----VTQSTNMITEPSLCSECGGRSF 167 (279)
T ss_dssp EETTTCCEEE----EECSSSSCCCCSCCTTTCCCCE
T ss_pred EcCCCCCEEE----EEecCCcccCCCcCCCCCCCCc
Confidence 5777764321 1112233444457888877773
No 61
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=30.82 E-value=57 Score=31.41 Aligned_cols=26 Identities=27% Similarity=0.625 Sum_probs=17.4
Q ss_pred EeecccCCCCcEEEe--------ecccccCCCce
Q 011450 206 VSTCSKCGGDGKIII--------DHCRRCGGNGE 231 (485)
Q Consensus 206 ~~~C~~C~G~G~~i~--------~~C~~C~G~G~ 231 (485)
.-.|..|+-...+.. ..|+.|.+.|.
T Consensus 134 ~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f 167 (279)
T 1ltl_A 134 VFECRGCMRHHAVTQSTNMITEPSLCSECGGRSF 167 (279)
T ss_dssp EEEETTTCCEEEEECSSSSCCCCSCCTTTCCCCE
T ss_pred EEEcCCCCCEEEEEecCCcccCCCcCCCCCCCCc
Confidence 458999986543321 13999998873
No 62
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=28.72 E-value=43 Score=26.20 Aligned_cols=53 Identities=15% Similarity=0.421 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHhhhcc-ccccchhcccc
Q 011450 56 ATLQEIKTSYRKLARKYHPDINKS---PGAEEKFKEISSAYEVLSD-DEKRSVYDRFG 109 (485)
Q Consensus 56 As~~eIk~AYr~la~k~HPD~n~~---~~a~e~F~~I~~AYevLsD-p~kR~~YD~~G 109 (485)
.-+.-++.+|+.+.+...|..... ..+..+|..-. +|..+.+ .+++.+|+.|-
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~-~fkav~~E~eR~~lFeeYi 62 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEP-AFEDITLESERKRIFKDFM 62 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSH-HHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCH-HHHhcCCHHHHHHHHHHHH
Confidence 346678999999998887877754 34555566555 7999866 56778888774
No 63
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=26.59 E-value=2.4e+02 Score=26.68 Aligned_cols=66 Identities=17% Similarity=0.331 Sum_probs=30.6
Q ss_pred eeeeEeecccCCCCcEEEeecccccCCCceeeeceEEEEE-----cCCCCCCCCEEEEccccCCCCCCCCCccEEEEE
Q 011450 202 LISQVSTCSKCGGDGKIIIDHCRRCGGNGEVQSKRSMKVV-----IPPGVSNGATMQIRGEGNFDRRRSLAGDLFVAL 274 (485)
Q Consensus 202 ~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~-----IP~Gv~dG~~Ir~~G~Gd~~~~g~~~GDL~v~I 274 (485)
.+.....|+.|...|...... ..| .-....+++|. +|+|--+- .|.+-=.++- .....|||-+...
T Consensus 164 ~~~~P~~Cp~C~~~~~~~l~~-~~s----~f~D~Q~ikiQE~pe~vp~G~~Pr-si~v~l~~dL-vd~~~PGDrV~vt 234 (268)
T 2vl6_A 164 VLEMPTICPKCGKPGQFRLIP-EKT----KLIDWQKAVIQERPEEVPSGQLPR-QLEIILEDDL-VDSARPGDRVKVT 234 (268)
T ss_dssp TCCCCSBCTTTCCBCEEEECG-GGC----EEEEEEEEEEECCGGGSCTTSCCC-EEEEEEEGGG-TTSSCTTCEEEEE
T ss_pred cccCCccCCCCCCCCCEEEec-Ccc----EEEeeEEEEEEeCCCCCCCCCCCc-EEEEEEccCc-cCcccCCCEEEEE
Confidence 344446788888876332221 111 12234455553 44443332 2333333332 2345788887733
No 64
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=25.93 E-value=48 Score=33.26 Aligned_cols=27 Identities=7% Similarity=0.228 Sum_probs=21.3
Q ss_pred CCcchhccCCCCCCHHHHHHHHHHHHHHh
Q 011450 44 TDYYSTLNVRQNATLQEIKTSYRKLARKY 72 (485)
Q Consensus 44 ~d~Y~iLgv~~~As~~eIk~AYr~la~k~ 72 (485)
..++++|.. +.+.++|+..++.+...|
T Consensus 219 ~~W~~~~~~--~vt~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 219 KHWWEYVDA--TVTLELLDELTHEFLQIL 245 (358)
T ss_dssp CCTTTTSCS--SCCHHHHHHHHHHHHHHT
T ss_pred cchHHHHhc--cCCHHHHHHHHHHHHHHH
Confidence 457877743 468999999999998776
No 65
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=25.88 E-value=1.5e+02 Score=30.37 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=23.2
Q ss_pred cccCCCCCCCCeeee-eeecC-Cce-eeeEeecccCCCCc
Q 011450 180 IQSCKACWGRGGVLK-TQRTP-FGL-ISQVSTCSKCGGDG 216 (485)
Q Consensus 180 ~~~C~~C~G~G~~~~-~~~~~-~g~-~~~~~~C~~C~G~G 216 (485)
...|+.|+..|.... ...+| |+- +.+...|+.|+-+-
T Consensus 220 ~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 220 NTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp EECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred cccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 457999999987532 23344 332 33456899996543
No 66
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=25.69 E-value=87 Score=26.80 Aligned_cols=43 Identities=16% Similarity=0.405 Sum_probs=31.2
Q ss_pred EEEeCCCCCCCCEEEEcCCCCCCCCC--------CCCCccEEEEEEEEcCC
Q 011450 316 DLRIPSGVQPGDTVKLQQMGVPDINN--------PSVRGDHLFIVNVLIPK 358 (485)
Q Consensus 316 ~l~Ip~g~q~G~~irl~g~G~P~~~~--------~~~rGDL~V~~~V~~P~ 358 (485)
...||.|.++|+.+.|.|.=.+.... .....|+-++|++.|.+
T Consensus 9 ~~~i~~gl~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~ 59 (138)
T 3zxf_A 9 KSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDT 59 (138)
T ss_dssp EEECTTCCCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTT
T ss_pred EeecCCCCCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCC
Confidence 56789999999999999864333211 11356999999999864
No 67
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=24.70 E-value=78 Score=24.36 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHH--HHHhhhcc-ccccchhcccc
Q 011450 55 NATLQEIKTSYRKLARKYHPDINKSPGAEEKFKEIS--SAYEVLSD-DEKRSVYDRFG 109 (485)
Q Consensus 55 ~As~~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I~--~AYevLsD-p~kR~~YD~~G 109 (485)
-+|.+|.+++|++|...++= ++.-.=++..+.|. .-|.+|.+ .++++.|+.|-
T Consensus 11 ~~t~eea~~~F~~LL~e~~V--~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRV--PSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTC--CTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCc--CCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHH
Confidence 47999999999999998753 33222122222222 25677776 45666777653
No 68
>3vkl_A Galectin-8; beta-sandwich, carbohydrate binding, oligosaccharide, sugar protein; HET: GAL BGC; 2.55A {Homo sapiens} PDB: 3naj_A* 3vkm_A* 4fqz_A* 3ojb_A
Probab=23.96 E-value=4.9e+02 Score=25.01 Aligned_cols=122 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred EEEEcCCCCCCCCEEEEccccCCCCCC-----------CCCccEEEEEEeeccc-------cccccccceEEEEEecchh
Q 011450 238 MKVVIPPGVSNGATMQIRGEGNFDRRR-----------SLAGDLFVALHVDEKQ-------GIHRDGLNLFSKISVDYTE 299 (485)
Q Consensus 238 l~V~IP~Gv~dG~~Ir~~G~Gd~~~~g-----------~~~GDL~v~I~v~~h~-------~F~R~G~DL~~~~~Isl~e 299 (485)
..-.||.|+..|+.|++.|.=...... ....|+.+.+..+-+. .+....-.-.-...--..+
T Consensus 19 ~~~~i~~gl~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~~~dialHfnpRf~~~~~IV~Ns~~~g~Wg~EEr~~~~Pf~ 98 (291)
T 3vkl_A 19 FVGTIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNTLINEKWGREEITYDTPFK 98 (291)
T ss_dssp EEEECSSCCCTTCEEEEEEECCTTCCBEEEEEESSCCBTTBCCEEEEEEEECSSSCEEEEEEEETTEECCCEEEESCSCC
T ss_pred EeeECCCCCccCcEEEEEEEECCCCCEEEEEEEeCCCCCCCCCEEEEEEeEcCCCCEEEEeCccCCEecCCcccCCCCCC
Q ss_pred hccCceEEEEccCCeEEEE-----------------------------------------------eCCCCCCCCEEEEc
Q 011450 300 AILGTSMEVETVEGMKDLR-----------------------------------------------IPSGVQPGDTVKLQ 332 (485)
Q Consensus 300 AllG~~i~V~tldG~~~l~-----------------------------------------------Ip~g~q~G~~irl~ 332 (485)
.=.-+++.|...+...+|. ||.|..+|+.|+|.
T Consensus 99 ~G~~F~l~I~~~~~~f~V~vng~~~~~F~hR~p~~~i~~l~v~Gdv~l~sv~~~~~~~~~~P~~~~i~~gl~pG~~i~I~ 178 (291)
T 3vkl_A 99 REKSFEIVIMVLKDKFQVAVNGKHTLLYGHRIGPEKIDTLGIYGKVNIHSIGFSFSSHMRLPFAARLNTPMGPGRTVVVK 178 (291)
T ss_dssp TTCEEEEEEEECSSEEEEEETTEEEEEEECSSCGGGCCEEEEEESCEEEEEEEECSSCBCSSEEEECSSCCCTTCEEEEE
T ss_pred CCCeEEEEEEEcCCeEEEEECCeEEEEeeccCChhHeeEEEEeCCEEEEEEecccccccCccccccCCCCCCCCCEEEEE
Q ss_pred CCCCCCCCC------CCCCccEEEEEEEEcCCC
Q 011450 333 QMGVPDINN------PSVRGDHLFIVNVLIPKD 359 (485)
Q Consensus 333 g~G~P~~~~------~~~rGDL~V~~~V~~P~~ 359 (485)
|.=.+.... .+...|+.++|++.|.+.
T Consensus 179 G~v~~~~~~F~Inl~~g~~~dialHfnpRf~~~ 211 (291)
T 3vkl_A 179 GEVNANAKSFNVDLLAGKSKDIALHLNPRLNIK 211 (291)
T ss_dssp EEECTTCCBEEEEEEETTTTEEEEEEEEETTTT
T ss_pred EEECCCCCeEEEEeecCCCCCEEEEEEeecCCC
No 69
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.93 E-value=51 Score=32.63 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=31.0
Q ss_pred CcccCCCCCCCCeeeeeeecCCceeeeEeecccCCCCcEEEeecccccCCCc
Q 011450 179 CIQSCKACWGRGGVLKTQRTPFGLISQVSTCSKCGGDGKIIIDHCRRCGGNG 230 (485)
Q Consensus 179 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G 230 (485)
....||.|++.=.........-..-...-.|..|+-.=...+.+|+.|...+
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 3568999998754322211010001124689999776556667899999864
No 70
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=22.71 E-value=57 Score=26.24 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.5
Q ss_pred EEEcCCCCChhHHHHHHHHHhhcCC
Q 011450 353 NVLIPKDISDPERALVEEIAFLKSP 377 (485)
Q Consensus 353 ~V~~P~~ls~~q~~ll~~l~~~~~~ 377 (485)
.++||..|+..||.++-+|++...-
T Consensus 35 ~l~FP~sLs~~eR~~IH~lA~~~GL 59 (86)
T 1msz_A 35 QLEFPPSLNSHDRLRVHQIAEEHGL 59 (86)
T ss_dssp EEEECTTCCSHHHHHHHHHHHHTTE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHcCC
Confidence 6899999999999999999987754
No 71
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.37 E-value=58 Score=24.33 Aligned_cols=49 Identities=12% Similarity=0.273 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccHHHHHHHH---HHHHhhhcc-cc-ccchhcccc
Q 011450 59 QEIKTSYRKLARKYHPDINKSPGAEEKFKEI---SSAYEVLSD-DE-KRSVYDRFG 109 (485)
Q Consensus 59 ~eIk~AYr~la~k~HPD~n~~~~a~e~F~~I---~~AYevLsD-p~-kR~~YD~~G 109 (485)
+|..+||.+|.+...=|.+ -.=++..+.| ..-|.+|.| |. ++++|+.|-
T Consensus 3 eEae~aF~~lL~~~~V~s~--wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST--WSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS--CCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC--CcHHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 5788999999987533332 3345556666 357999997 65 777888763
Done!