Query 011451
Match_columns 485
No_of_seqs 458 out of 4256
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 08:24:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wao_1 Serine/threonine protei 100.0 3.8E-92 1.3E-96 733.7 40.2 471 10-481 2-472 (477)
2 3h63_A Serine/threonine-protei 100.0 1.5E-83 5E-88 618.7 28.5 315 163-477 1-315 (315)
3 3icf_A PPT, serine/threonine-p 100.0 2.1E-83 7.1E-88 621.9 27.6 320 161-483 2-335 (335)
4 3ll8_A Serine/threonine-protei 100.0 3.1E-76 1E-80 572.9 28.5 289 178-474 30-332 (357)
5 3e7a_A PP-1A, serine/threonine 100.0 2.8E-75 9.6E-80 557.2 27.1 282 178-466 8-298 (299)
6 1aui_A Calcineurin, serine/thr 100.0 1.3E-71 4.3E-76 559.7 28.4 291 178-476 43-347 (521)
7 2ie4_C PP2A-alpha;, serine/thr 100.0 1.5E-70 5E-75 531.0 29.1 291 173-470 5-296 (309)
8 1fjm_A Protein serine/threonin 100.0 1.7E-68 5.7E-73 519.4 27.8 285 178-469 9-302 (330)
9 2z72_A Protein-tyrosine-phosph 100.0 1.4E-40 4.9E-45 329.0 6.6 230 207-452 60-319 (342)
10 2dfj_A Diadenosinetetraphospha 100.0 5.9E-33 2E-37 266.2 1.1 195 223-425 2-211 (280)
11 2qjc_A Diadenosine tetraphosph 99.9 7.4E-23 2.5E-27 194.8 10.9 220 206-465 7-246 (262)
12 4gco_A Protein STI-1; structur 99.8 1.5E-19 5E-24 152.5 17.7 120 7-126 6-125 (126)
13 1g5b_A Serine/threonine protei 99.8 6.9E-20 2.3E-24 170.2 11.1 164 216-418 7-190 (221)
14 4gyw_A UDP-N-acetylglucosamine 99.8 5.1E-18 1.8E-22 183.5 17.2 146 8-167 3-148 (723)
15 4ga2_A E3 SUMO-protein ligase 99.7 1.9E-17 6.6E-22 143.8 14.0 123 8-130 25-148 (150)
16 3gyz_A Chaperone protein IPGC; 99.7 5.2E-17 1.8E-21 141.2 15.9 110 7-116 29-138 (151)
17 3vtx_A MAMA; tetratricopeptide 99.7 2.2E-17 7.5E-22 147.6 13.8 141 12-166 3-143 (184)
18 2pl2_A Hypothetical conserved 99.7 8.2E-18 2.8E-22 155.4 11.2 130 11-142 2-142 (217)
19 2pl2_A Hypothetical conserved 99.7 1.8E-17 6.2E-22 153.1 13.2 144 8-166 33-187 (217)
20 3upv_A Heat shock protein STI1 99.7 9.9E-17 3.4E-21 134.2 16.4 118 11-128 1-124 (126)
21 3urz_A Uncharacterized protein 99.7 3.7E-17 1.3E-21 150.0 14.1 130 13-142 3-148 (208)
22 2vgx_A Chaperone SYCD; alterna 99.7 4E-16 1.4E-20 135.1 17.7 123 8-130 15-137 (148)
23 2xcb_A PCRH, regulatory protei 99.7 5.6E-16 1.9E-20 132.9 18.1 125 7-131 11-135 (142)
24 3sz7_A HSC70 cochaperone (SGT) 99.7 5.5E-16 1.9E-20 136.2 18.1 120 7-126 4-123 (164)
25 2h6f_A Protein farnesyltransfe 99.7 1.2E-16 4.2E-21 160.4 14.5 148 8-169 91-239 (382)
26 4gcn_A Protein STI-1; structur 99.7 4.3E-16 1.5E-20 131.2 15.5 113 10-123 4-123 (127)
27 2hr2_A Hypothetical protein; a 99.7 1.2E-16 4.2E-21 138.2 11.9 121 11-131 8-151 (159)
28 4ga2_A E3 SUMO-protein ligase 99.7 1.2E-17 4.1E-22 145.1 5.6 132 19-164 2-134 (150)
29 4i17_A Hypothetical protein; T 99.7 5E-16 1.7E-20 143.8 16.4 143 13-169 6-158 (228)
30 3rkv_A Putative peptidylprolyl 99.7 5.2E-16 1.8E-20 136.0 15.6 124 8-131 5-147 (162)
31 3vtx_A MAMA; tetratricopeptide 99.7 5.9E-16 2E-20 138.2 16.1 140 10-163 35-174 (184)
32 1a17_A Serine/threonine protei 99.7 2.8E-15 9.4E-20 130.7 18.0 135 8-142 7-141 (166)
33 4gyw_A UDP-N-acetylglucosamine 99.7 2.5E-16 8.4E-21 170.4 13.2 131 10-142 39-169 (723)
34 2vyi_A SGTA protein; chaperone 99.7 8.9E-15 3E-19 121.5 18.6 126 6-131 4-129 (131)
35 2lni_A Stress-induced-phosphop 99.6 3.4E-15 1.1E-19 124.9 15.7 125 6-130 8-132 (133)
36 2h6f_A Protein farnesyltransfe 99.6 6.5E-16 2.2E-20 155.2 11.5 151 9-167 126-277 (382)
37 1p5q_A FKBP52, FK506-binding p 99.6 9.7E-15 3.3E-19 144.2 19.3 123 10-132 143-280 (336)
38 3gyz_A Chaperone protein IPGC; 99.6 2E-16 6.7E-21 137.6 5.9 120 29-162 17-136 (151)
39 3q49_B STIP1 homology and U bo 99.6 9E-15 3.1E-19 123.5 15.7 122 9-130 4-130 (137)
40 1elw_A TPR1-domain of HOP; HOP 99.6 2.5E-14 8.5E-19 116.5 17.2 115 12-126 2-116 (118)
41 4i17_A Hypothetical protein; T 99.6 3.9E-15 1.3E-19 137.8 13.8 129 12-140 40-177 (228)
42 4abn_A Tetratricopeptide repea 99.6 2.1E-15 7.3E-20 156.1 12.7 133 9-142 97-245 (474)
43 2pzi_A Probable serine/threoni 99.6 2E-15 6.9E-20 163.2 12.8 147 8-169 427-573 (681)
44 1hxi_A PEX5, peroxisome target 99.6 5.9E-15 2E-19 123.1 12.5 104 14-117 17-120 (121)
45 2fbn_A 70 kDa peptidylprolyl i 99.6 3.1E-14 1.1E-18 128.9 18.3 122 10-131 34-171 (198)
46 3rqz_A Metallophosphoesterase; 99.6 6.5E-15 2.2E-19 138.8 14.1 187 222-460 4-215 (246)
47 4gco_A Protein STI-1; structur 99.6 2.4E-15 8.2E-20 126.4 9.8 113 39-165 4-116 (126)
48 2dba_A Smooth muscle cell asso 99.6 4.8E-14 1.6E-18 120.2 16.1 119 8-126 22-143 (148)
49 1na0_A Designed protein CTPR3; 99.6 1.2E-13 4.3E-18 113.4 18.1 116 13-128 8-123 (125)
50 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3E-14 1E-18 146.7 17.3 124 9-132 263-401 (457)
51 1nnw_A Hypothetical protein; s 99.6 6.5E-14 2.2E-18 132.3 18.1 198 223-463 3-222 (252)
52 4abn_A Tetratricopeptide repea 99.6 3.1E-15 1E-19 154.9 9.1 113 27-142 81-203 (474)
53 2fo7_A Synthetic consensus TPR 99.6 5.5E-14 1.9E-18 116.9 15.2 126 15-142 2-127 (136)
54 1elr_A TPR2A-domain of HOP; HO 99.6 8.5E-14 2.9E-18 115.6 16.1 120 11-131 1-127 (131)
55 3as5_A MAMA; tetratricopeptide 99.6 5.5E-14 1.9E-18 124.0 15.9 131 10-142 38-168 (186)
56 3qky_A Outer membrane assembly 99.5 1.1E-13 3.9E-18 130.8 17.3 141 9-163 10-181 (261)
57 3as5_A MAMA; tetratricopeptide 99.5 2.7E-13 9.3E-18 119.5 18.4 131 10-142 4-134 (186)
58 1w3b_A UDP-N-acetylglucosamine 99.5 1.3E-14 4.5E-19 145.2 10.8 130 11-142 64-193 (388)
59 1hh8_A P67PHOX, NCF-2, neutrop 99.5 8.7E-14 3E-18 126.8 15.3 136 11-163 3-154 (213)
60 2xev_A YBGF; tetratricopeptide 99.5 1.5E-13 5.1E-18 114.7 15.3 112 15-126 3-120 (129)
61 2vsy_A XCC0866; transferase, g 99.5 6.8E-14 2.3E-18 147.9 16.3 145 8-166 17-164 (568)
62 2q7f_A YRRB protein; TPR, prot 99.5 5.2E-13 1.8E-17 123.6 20.1 131 10-142 53-183 (243)
63 1w3b_A UDP-N-acetylglucosamine 99.5 3.9E-14 1.3E-18 141.7 13.3 130 11-142 132-261 (388)
64 1ihg_A Cyclophilin 40; ppiase 99.5 1.2E-13 4.1E-18 138.2 16.6 123 10-132 219-357 (370)
65 2vgx_A Chaperone SYCD; alterna 99.5 9.1E-15 3.1E-19 126.5 7.0 118 32-163 5-122 (148)
66 2c2l_A CHIP, carboxy terminus 99.5 1.5E-13 5E-18 132.1 16.1 105 12-116 2-106 (281)
67 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-13 4.1E-18 128.0 14.8 143 10-166 87-229 (243)
68 2vq2_A PILW, putative fimbrial 99.5 1.7E-13 6E-18 125.0 15.7 132 9-142 3-137 (225)
69 4eqf_A PEX5-related protein; a 99.5 4.6E-13 1.6E-17 132.6 19.5 129 12-142 63-237 (365)
70 3qky_A Outer membrane assembly 99.5 2E-13 6.7E-18 129.1 15.9 142 11-164 49-229 (261)
71 1zu2_A Mitochondrial import re 99.5 7.5E-14 2.5E-18 120.5 11.7 102 25-126 13-135 (158)
72 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.8E-13 1.3E-17 127.0 17.6 131 9-142 38-168 (275)
73 2ho1_A Type 4 fimbrial biogene 99.5 7.8E-13 2.7E-17 123.6 18.8 132 9-142 31-165 (252)
74 3uq3_A Heat shock protein STI1 99.5 2E-13 6.8E-18 127.4 14.5 128 13-142 78-231 (258)
75 4eqf_A PEX5-related protein; a 99.5 6.2E-14 2.1E-18 138.9 11.4 130 32-163 45-210 (365)
76 3u4t_A TPR repeat-containing p 99.5 1.5E-13 5E-18 129.9 13.4 135 14-163 3-141 (272)
77 3urz_A Uncharacterized protein 99.5 5.4E-13 1.9E-17 122.0 16.7 131 10-143 34-182 (208)
78 2if4_A ATFKBP42; FKBP-like, al 99.5 2.8E-14 9.7E-19 140.9 8.5 132 10-142 175-323 (338)
79 2kck_A TPR repeat; tetratricop 99.5 8.1E-14 2.8E-18 112.5 9.7 106 11-116 3-111 (112)
80 2y4t_A DNAJ homolog subfamily 99.5 3.4E-13 1.2E-17 137.2 16.4 153 8-162 20-175 (450)
81 2e2e_A Formate-dependent nitri 99.5 6.1E-13 2.1E-17 117.8 15.9 117 10-126 40-159 (177)
82 3uq3_A Heat shock protein STI1 99.5 5.3E-14 1.8E-18 131.3 9.4 138 11-163 2-172 (258)
83 2pzi_A Probable serine/threoni 99.5 3.1E-14 1E-18 154.0 8.8 174 10-201 390-573 (681)
84 3ieg_A DNAJ homolog subfamily 99.5 7.6E-14 2.6E-18 136.7 10.9 149 13-163 2-153 (359)
85 2ho1_A Type 4 fimbrial biogene 99.5 2.7E-13 9.1E-18 126.7 14.1 131 10-142 67-199 (252)
86 1qqe_A Vesicular transport pro 99.5 2.9E-13 1E-17 130.6 14.7 183 10-207 73-284 (292)
87 2vq2_A PILW, putative fimbrial 99.5 4.1E-13 1.4E-17 122.5 14.9 131 10-142 38-171 (225)
88 3hym_B Cell division cycle pro 99.5 9.2E-13 3.1E-17 127.6 18.1 130 11-142 87-217 (330)
89 1fch_A Peroxisomal targeting s 99.5 9.5E-13 3.2E-17 130.0 18.4 131 10-142 94-275 (368)
90 3hym_B Cell division cycle pro 99.5 4.9E-13 1.7E-17 129.6 15.9 136 14-163 159-303 (330)
91 2yhc_A BAMD, UPF0169 lipoprote 99.5 3.1E-13 1.1E-17 125.1 13.1 151 13-163 3-180 (225)
92 3qou_A Protein YBBN; thioredox 99.5 1.3E-13 4.5E-18 132.9 10.5 139 11-163 114-252 (287)
93 3k9i_A BH0479 protein; putativ 99.5 1E-13 3.5E-18 114.4 8.2 98 26-123 2-102 (117)
94 2xcb_A PCRH, regulatory protei 99.5 6.8E-14 2.3E-18 119.7 7.0 116 34-163 4-119 (142)
95 2e2e_A Formate-dependent nitri 99.5 1.4E-13 4.7E-18 122.0 9.2 128 22-163 18-148 (177)
96 2r5s_A Uncharacterized protein 99.5 6.4E-14 2.2E-18 124.5 6.9 141 10-165 2-143 (176)
97 3cv0_A Peroxisome targeting si 99.4 9E-13 3.1E-17 127.5 15.0 130 11-142 169-310 (327)
98 1fch_A Peroxisomal targeting s 99.4 9.8E-13 3.3E-17 129.9 15.3 128 13-142 216-354 (368)
99 3mkr_A Coatomer subunit epsilo 99.4 1.2E-12 4E-17 126.5 15.0 142 11-165 127-270 (291)
100 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.5E-12 5.3E-17 120.4 15.2 130 11-142 38-208 (225)
101 3u4t_A TPR repeat-containing p 99.4 2.4E-13 8.4E-18 128.4 8.8 138 10-163 33-175 (272)
102 3qfm_A SAPH, putative uncharac 99.4 8.8E-13 3E-17 125.7 12.3 114 223-342 13-139 (270)
103 3ieg_A DNAJ homolog subfamily 99.4 2.3E-12 8E-17 126.0 15.0 131 10-142 33-178 (359)
104 3fp2_A TPR repeat-containing p 99.4 1.8E-12 6.2E-17 134.8 14.2 125 14-141 243-367 (537)
105 1hh8_A P67PHOX, NCF-2, neutrop 99.4 8.1E-12 2.8E-16 113.6 15.9 105 13-117 36-156 (213)
106 1hxi_A PEX5, peroxisome target 99.4 4E-12 1.4E-16 105.7 11.9 101 50-164 19-119 (121)
107 2r5s_A Uncharacterized protein 99.4 1.9E-12 6.4E-17 114.9 10.5 132 8-142 34-168 (176)
108 2y4t_A DNAJ homolog subfamily 99.4 8.3E-12 2.8E-16 126.9 16.6 139 11-163 208-362 (450)
109 2xpi_A Anaphase-promoting comp 99.4 6.2E-12 2.1E-16 132.8 15.9 130 11-142 370-499 (597)
110 3upv_A Heat shock protein STI1 99.4 2.8E-12 9.6E-17 106.8 10.1 96 45-142 1-96 (126)
111 4gcn_A Protein STI-1; structur 99.4 1.9E-12 6.4E-17 108.7 8.9 95 46-142 6-107 (127)
112 2hr2_A Hypothetical protein; a 99.3 2.3E-12 7.9E-17 111.4 9.4 108 47-168 10-140 (159)
113 3qou_A Protein YBBN; thioredox 99.3 2.6E-12 8.7E-17 123.8 10.7 132 9-142 146-279 (287)
114 2ond_A Cleavage stimulation fa 99.3 3E-11 1E-15 117.2 18.1 131 10-142 95-227 (308)
115 3cv0_A Peroxisome targeting si 99.3 1.4E-12 4.9E-17 126.1 8.5 111 12-122 19-129 (327)
116 2fo7_A Synthetic consensus TPR 99.3 2.6E-11 8.9E-16 100.4 14.9 105 11-115 32-136 (136)
117 2xpi_A Anaphase-promoting comp 99.3 9.9E-12 3.4E-16 131.2 15.3 127 14-142 441-574 (597)
118 3sz7_A HSC70 cochaperone (SGT) 99.3 4E-12 1.4E-16 111.2 10.1 110 44-167 7-116 (164)
119 3mkr_A Coatomer subunit epsilo 99.3 9.9E-12 3.4E-16 120.0 13.6 138 10-166 97-236 (291)
120 1xnf_A Lipoprotein NLPI; TPR, 99.3 4.2E-12 1.4E-16 119.8 10.7 127 23-163 14-144 (275)
121 3edt_B KLC 2, kinesin light ch 99.3 6.1E-12 2.1E-16 118.6 11.7 132 9-142 38-193 (283)
122 2vsy_A XCC0866; transferase, g 99.3 3.9E-12 1.3E-16 134.4 11.3 124 27-164 2-125 (568)
123 2l6j_A TPR repeat-containing p 99.3 1.4E-12 4.8E-17 105.5 5.7 94 13-106 3-102 (111)
124 1qqe_A Vesicular transport pro 99.3 9E-12 3.1E-16 120.1 11.9 107 12-118 115-235 (292)
125 3fp2_A TPR repeat-containing p 99.3 6E-12 2.1E-16 130.9 11.4 142 14-169 276-417 (537)
126 2kat_A Uncharacterized protein 99.3 3.4E-11 1.2E-15 98.5 13.6 101 31-131 2-104 (115)
127 4g1t_A Interferon-induced prot 99.3 3.4E-11 1.2E-15 123.3 16.3 122 10-131 47-187 (472)
128 1dce_A Protein (RAB geranylger 99.3 1.9E-11 6.4E-16 128.9 13.8 148 9-168 58-230 (567)
129 1p5q_A FKBP52, FK506-binding p 99.3 1E-12 3.5E-17 129.7 3.7 126 26-165 125-265 (336)
130 3edt_B KLC 2, kinesin light ch 99.3 1.1E-11 3.9E-16 116.7 10.8 104 8-111 79-198 (283)
131 2ond_A Cleavage stimulation fa 99.3 5.2E-11 1.8E-15 115.6 15.7 141 10-163 46-202 (308)
132 3q49_B STIP1 homology and U bo 99.3 1.7E-11 5.7E-16 103.2 10.6 107 42-162 3-109 (137)
133 2gw1_A Mitochondrial precursor 99.3 1.1E-11 3.7E-16 127.9 10.6 118 11-128 301-424 (514)
134 1na3_A Designed protein CTPR2; 99.3 7.3E-11 2.5E-15 91.5 12.8 86 11-96 6-91 (91)
135 1ouv_A Conserved hypothetical 99.3 9.4E-11 3.2E-15 111.1 15.6 125 10-142 2-138 (273)
136 2kck_A TPR repeat; tetratricop 99.2 1.4E-11 4.8E-16 99.0 8.0 98 43-142 1-101 (112)
137 2gw1_A Mitochondrial precursor 99.2 1.8E-11 6E-16 126.3 10.4 127 14-142 270-396 (514)
138 3nf1_A KLC 1, kinesin light ch 99.2 1.7E-11 5.8E-16 117.5 9.5 133 8-142 105-302 (311)
139 3nf1_A KLC 1, kinesin light ch 99.2 4.3E-11 1.5E-15 114.7 11.9 132 9-142 64-219 (311)
140 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 2.8E-12 9.5E-17 132.0 3.0 128 26-167 246-388 (457)
141 2fbn_A 70 kDa peptidylprolyl i 99.2 8.7E-12 3E-16 112.7 5.9 132 18-163 8-155 (198)
142 3ulq_A Response regulator aspa 99.2 5.7E-11 2E-15 118.7 11.6 133 8-142 137-288 (383)
143 3dra_A Protein farnesyltransfe 99.2 8.9E-11 3E-15 113.6 12.3 121 10-130 63-194 (306)
144 2ifu_A Gamma-SNAP; membrane fu 99.2 3.7E-11 1.3E-15 116.6 9.7 139 11-165 73-229 (307)
145 3ro3_A PINS homolog, G-protein 99.2 8.1E-11 2.8E-15 100.8 10.6 132 9-142 4-153 (164)
146 1a17_A Serine/threonine protei 99.2 2.5E-10 8.7E-15 98.8 13.6 102 10-111 43-146 (166)
147 4g1t_A Interferon-induced prot 99.2 7.6E-11 2.6E-15 120.7 11.8 145 10-168 132-285 (472)
148 3rkv_A Putative peptidylprolyl 99.2 5.3E-11 1.8E-15 103.8 9.0 104 47-164 10-131 (162)
149 3dss_A Geranylgeranyl transfer 99.2 3.1E-10 1.1E-14 110.6 15.0 148 8-167 58-230 (331)
150 2kc7_A BFR218_protein; tetratr 99.2 5.3E-11 1.8E-15 94.4 8.0 92 17-116 3-95 (99)
151 1na3_A Designed protein CTPR2; 99.2 2.6E-10 8.8E-15 88.3 11.8 84 46-129 7-90 (91)
152 2l6j_A TPR repeat-containing p 99.2 1.1E-10 3.8E-15 94.0 10.0 94 47-142 3-102 (111)
153 1ouv_A Conserved hypothetical 99.1 1.8E-10 6.2E-15 109.1 11.9 126 11-142 35-174 (273)
154 2lni_A Stress-induced-phosphop 99.1 1.1E-10 3.8E-15 96.9 9.2 97 44-142 12-108 (133)
155 1elw_A TPR1-domain of HOP; HOP 99.1 3.4E-10 1.2E-14 91.6 11.8 103 47-163 3-105 (118)
156 3ma5_A Tetratricopeptide repea 99.1 4E-10 1.4E-14 90.0 11.9 84 43-126 2-87 (100)
157 3rjv_A Putative SEL1 repeat pr 99.1 8.6E-11 2.9E-15 107.6 8.4 126 12-142 16-153 (212)
158 4a1s_A PINS, partner of inscut 99.1 2.6E-10 8.8E-15 114.4 12.6 122 10-131 44-181 (411)
159 2qfc_A PLCR protein; TPR, HTH, 99.1 3.1E-10 1.1E-14 109.1 12.7 128 13-142 114-261 (293)
160 3dss_A Geranylgeranyl transfer 99.1 6.1E-10 2.1E-14 108.5 14.8 143 9-163 103-271 (331)
161 1zu2_A Mitochondrial import re 99.1 8.4E-11 2.9E-15 101.3 7.4 93 59-163 13-124 (158)
162 1dce_A Protein (RAB geranylger 99.1 1.1E-09 3.8E-14 115.3 17.6 146 11-169 22-183 (567)
163 2dba_A Smooth muscle cell asso 99.1 3.4E-10 1.2E-14 95.9 11.0 107 43-163 23-132 (148)
164 3ulq_A Response regulator aspa 99.1 1.1E-10 3.7E-15 116.6 9.0 124 17-142 106-248 (383)
165 2qfc_A PLCR protein; TPR, HTH, 99.1 2.7E-09 9.3E-14 102.5 18.3 131 10-142 71-220 (293)
166 2vyi_A SGTA protein; chaperone 99.1 2.7E-10 9.2E-15 93.9 9.7 99 42-142 6-104 (131)
167 3q15_A PSP28, response regulat 99.1 1.9E-10 6.6E-15 114.7 10.3 133 8-142 135-285 (378)
168 1na0_A Designed protein CTPR3; 99.1 7.4E-10 2.5E-14 90.4 12.0 98 43-142 3-101 (125)
169 3gw4_A Uncharacterized protein 99.1 2.6E-10 8.9E-15 102.3 10.0 130 11-142 23-171 (203)
170 3u3w_A Transcriptional activat 99.1 1.2E-10 4E-15 112.1 8.1 127 15-142 116-261 (293)
171 2xev_A YBGF; tetratricopeptide 99.1 3.9E-10 1.3E-14 93.6 9.9 92 49-142 3-100 (129)
172 3k9i_A BH0479 protein; putativ 99.1 7E-10 2.4E-14 91.0 10.6 80 10-89 23-102 (117)
173 3q7a_A Farnesyltransferase alp 99.1 3.3E-10 1.1E-14 111.0 9.8 124 9-132 49-175 (349)
174 3dra_A Protein farnesyltransfe 99.1 1.6E-09 5.5E-14 104.8 14.4 123 9-131 98-235 (306)
175 2c2l_A CHIP, carboxy terminus 99.1 3.8E-10 1.3E-14 108.1 9.8 105 45-163 1-105 (281)
176 1wao_1 Serine/threonine protei 99.1 1.4E-10 4.9E-15 119.8 7.1 108 10-117 36-156 (477)
177 3sf4_A G-protein-signaling mod 99.1 4.3E-10 1.5E-14 112.0 10.3 132 9-142 182-331 (406)
178 3ro2_A PINS homolog, G-protein 99.1 1.1E-09 3.6E-14 105.5 12.7 120 12-131 3-138 (338)
179 2ooe_A Cleavage stimulation fa 99.0 2.2E-09 7.5E-14 112.2 15.8 177 10-209 317-495 (530)
180 3ma5_A Tetratricopeptide repea 99.0 6E-10 2E-14 88.9 8.7 86 9-94 2-89 (100)
181 3q7a_A Farnesyltransferase alp 99.0 1.1E-08 3.9E-13 100.0 19.2 90 10-99 84-176 (349)
182 3ro2_A PINS homolog, G-protein 99.0 2.9E-10 9.8E-15 109.6 7.7 131 10-142 179-327 (338)
183 2ifu_A Gamma-SNAP; membrane fu 99.0 3.3E-10 1.1E-14 109.8 8.1 128 12-142 34-179 (307)
184 3sf4_A G-protein-signaling mod 99.0 8.1E-10 2.8E-14 110.0 11.0 121 11-131 6-142 (406)
185 4a1s_A PINS, partner of inscut 99.0 2.5E-10 8.6E-15 114.5 7.2 131 10-142 219-367 (411)
186 3rjv_A Putative SEL1 repeat pr 99.0 7.3E-10 2.5E-14 101.4 9.7 127 12-142 48-192 (212)
187 1elr_A TPR2A-domain of HOP; HO 99.0 6.9E-10 2.4E-14 91.5 8.3 95 46-142 2-103 (131)
188 3u3w_A Transcriptional activat 99.0 3E-09 1E-13 102.1 14.1 182 11-212 72-272 (293)
189 2kc7_A BFR218_protein; tetratr 99.0 2.7E-09 9.1E-14 84.3 9.9 71 51-121 3-74 (99)
190 4f3v_A ESX-1 secretion system 99.0 7.1E-10 2.4E-14 105.2 6.8 126 14-142 102-232 (282)
191 2if4_A ATFKBP42; FKBP-like, al 99.0 6.2E-10 2.1E-14 109.7 6.6 103 15-117 231-334 (338)
192 2ooe_A Cleavage stimulation fa 98.9 7.4E-09 2.5E-13 108.2 14.9 141 10-163 268-424 (530)
193 1ihg_A Cyclophilin 40; ppiase 98.9 4.4E-09 1.5E-13 104.9 12.4 96 9-104 268-363 (370)
194 3q15_A PSP28, response regulat 98.9 1.8E-09 6.2E-14 107.6 8.8 105 10-114 178-293 (378)
195 4f3v_A ESX-1 secretion system 98.9 9.9E-09 3.4E-13 97.3 12.5 113 9-123 131-248 (282)
196 3ro3_A PINS homolog, G-protein 98.9 1.1E-08 3.6E-13 87.3 11.3 104 11-114 46-161 (164)
197 2kat_A Uncharacterized protein 98.9 8.5E-09 2.9E-13 84.0 10.1 88 9-96 14-103 (115)
198 3n71_A Histone lysine methyltr 98.9 1.1E-08 3.8E-13 105.5 13.0 126 15-142 310-459 (490)
199 1s3l_A Hypothetical protein MJ 98.9 5.5E-08 1.9E-12 87.3 15.6 65 222-296 26-90 (190)
200 1pc2_A Mitochondria fission pr 98.9 3.2E-08 1.1E-12 84.3 12.8 102 29-130 13-119 (152)
201 1hz4_A MALT regulatory protein 98.8 4.7E-08 1.6E-12 96.7 13.5 130 11-142 11-159 (373)
202 3gw4_A Uncharacterized protein 98.8 3E-08 1E-12 88.7 10.5 107 8-114 60-179 (203)
203 3bee_A Putative YFRE protein; 98.8 7.4E-08 2.5E-12 75.6 11.3 74 44-117 2-78 (93)
204 1hz4_A MALT regulatory protein 98.7 5.9E-08 2E-12 96.0 12.6 129 12-142 51-198 (373)
205 2xm6_A Protein corresponding t 98.7 8.3E-08 2.8E-12 99.1 12.7 106 15-126 292-409 (490)
206 3e4b_A ALGK; tetratricopeptide 98.7 3E-08 1E-12 101.6 8.9 122 15-142 177-311 (452)
207 1uf3_A Hypothetical protein TT 98.7 1.9E-07 6.5E-12 85.8 13.4 71 223-295 7-77 (228)
208 3qww_A SET and MYND domain-con 98.7 1.5E-07 5.1E-12 95.4 12.8 100 21-120 305-425 (433)
209 3ck2_A Conserved uncharacteriz 98.7 2E-07 6.8E-12 82.5 12.0 108 223-419 8-118 (176)
210 2kkn_A Uncharacterized protein 98.6 6.4E-08 2.2E-12 85.9 8.4 84 223-342 24-112 (178)
211 2xm6_A Protein corresponding t 98.6 3.8E-07 1.3E-11 94.1 15.5 126 11-142 36-175 (490)
212 3bee_A Putative YFRE protein; 98.6 1.4E-07 4.8E-12 74.1 9.3 73 10-82 2-77 (93)
213 2v5f_A Prolyl 4-hydroxylase su 98.6 4.6E-07 1.6E-11 72.6 12.6 77 48-124 5-88 (104)
214 2a22_A Vacuolar protein sortin 98.6 2.2E-07 7.4E-12 85.2 11.8 118 223-418 27-153 (215)
215 3qwp_A SET and MYND domain-con 98.6 1.5E-07 5.1E-12 95.5 11.6 113 14-126 287-423 (429)
216 1xi4_A Clathrin heavy chain; a 98.6 2.5E-07 8.5E-12 103.5 13.8 93 11-108 1102-1221(1630)
217 1klx_A Cysteine rich protein B 98.6 4.8E-07 1.6E-11 76.5 12.8 88 20-111 31-126 (138)
218 1su1_A Hypothetical protein YF 98.6 7.7E-08 2.6E-12 87.7 8.0 68 223-295 27-102 (208)
219 2v5f_A Prolyl 4-hydroxylase su 98.6 4.7E-07 1.6E-11 72.6 11.5 76 14-89 5-87 (104)
220 3n71_A Histone lysine methyltr 98.6 1.1E-07 3.9E-12 97.9 9.4 106 7-112 344-465 (490)
221 1klx_A Cysteine rich protein B 98.6 3.7E-07 1.3E-11 77.3 10.8 108 27-142 8-121 (138)
222 3ly7_A Transcriptional activat 98.6 4.4E-07 1.5E-11 88.8 12.5 137 13-164 195-344 (372)
223 1z2w_A Vacuolar protein sortin 98.5 2.2E-06 7.6E-11 76.9 15.3 64 223-295 12-77 (192)
224 3e4b_A ALGK; tetratricopeptide 98.4 5.4E-07 1.8E-11 92.2 10.3 124 13-142 140-275 (452)
225 3mv2_B Coatomer subunit epsilo 98.4 1.3E-06 4.3E-11 83.9 11.7 126 14-142 100-235 (310)
226 1xm7_A Hypothetical protein AQ 98.4 1E-06 3.5E-11 79.3 9.8 136 223-423 3-156 (195)
227 1nzn_A CGI-135 protein, fissio 98.4 6.1E-06 2.1E-10 67.6 12.3 105 25-129 12-121 (126)
228 3ib7_A ICC protein; metallopho 98.3 4.2E-06 1.4E-10 81.5 13.4 72 222-293 26-112 (330)
229 1b89_A Protein (clathrin heavy 98.3 5.7E-07 2E-11 90.2 6.7 120 16-166 124-243 (449)
230 3u64_A Protein TP_0956; tetrat 98.3 3.2E-06 1.1E-10 79.5 10.3 107 9-115 147-273 (301)
231 3mv2_B Coatomer subunit epsilo 98.3 3.2E-06 1.1E-10 81.1 10.4 120 11-131 133-270 (310)
232 3d03_A Phosphohydrolase; glyce 98.3 2.7E-05 9.3E-10 73.4 16.7 68 223-294 2-84 (274)
233 1xi4_A Clathrin heavy chain; a 98.2 5.2E-06 1.8E-10 93.1 12.3 120 15-142 1196-1340(1630)
234 1pc2_A Mitochondria fission pr 98.2 4.7E-06 1.6E-10 70.9 8.9 81 11-91 29-114 (152)
235 4b4t_Q 26S proteasome regulato 98.2 7.4E-06 2.5E-10 82.3 11.8 125 16-142 6-159 (434)
236 4b4t_Q 26S proteasome regulato 98.2 7.6E-06 2.6E-10 82.2 11.6 130 11-142 52-199 (434)
237 1b89_A Protein (clathrin heavy 98.2 1.1E-05 3.9E-10 80.9 11.9 122 12-142 146-267 (449)
238 3u64_A Protein TP_0956; tetrat 98.1 9.1E-06 3.1E-10 76.4 10.0 108 43-163 147-273 (301)
239 3ly7_A Transcriptional activat 98.1 1.8E-05 6.3E-10 77.3 12.5 108 9-117 228-345 (372)
240 3qwp_A SET and MYND domain-con 97.9 3E-05 1E-09 78.5 9.2 90 6-95 321-426 (429)
241 4e6h_A MRNA 3'-END-processing 97.8 0.00039 1.3E-08 74.3 17.3 179 11-213 375-577 (679)
242 3qww_A SET and MYND domain-con 97.8 3.6E-05 1.2E-09 77.9 8.6 78 7-84 333-423 (433)
243 2nxf_A Putative dimetal phosph 97.8 2.3E-05 8E-10 75.5 6.4 71 223-294 7-100 (322)
244 2yvt_A Hypothetical protein AQ 97.8 1.1E-05 3.6E-10 75.8 3.5 71 223-295 7-103 (260)
245 1y8m_A FIS1; mitochondria, unk 97.7 0.0014 4.7E-08 54.5 14.7 86 45-130 36-125 (144)
246 3o48_A Mitochondria fission 1 97.7 0.00054 1.9E-08 56.2 11.7 100 31-131 24-127 (134)
247 3rl5_A Metallophosphoesterase 97.7 0.0003 1E-08 66.9 11.8 64 221-295 59-124 (296)
248 4e6h_A MRNA 3'-END-processing 97.6 0.00011 3.9E-09 78.5 9.5 80 32-111 327-407 (679)
249 2xmo_A LMO2642 protein; phosph 97.6 0.001 3.4E-08 67.5 15.3 61 394-455 261-322 (443)
250 3ffl_A Anaphase-promoting comp 97.6 0.00055 1.9E-08 58.6 10.6 111 15-126 21-165 (167)
251 2uy1_A Cleavage stimulation fa 97.5 0.0033 1.1E-07 64.7 17.9 197 11-246 210-451 (493)
252 4h7y_A Dual specificity protei 97.5 0.0027 9.1E-08 53.2 13.1 109 9-118 8-130 (161)
253 1nzn_A CGI-135 protein, fissio 97.3 0.00091 3.1E-08 54.7 8.7 81 12-92 33-118 (126)
254 3o48_A Mitochondria fission 1 97.0 0.0041 1.4E-07 51.0 9.7 81 13-93 39-123 (134)
255 1y8m_A FIS1; mitochondria, unk 97.0 0.007 2.4E-07 50.3 11.1 81 11-91 36-120 (144)
256 3av0_A DNA double-strand break 96.7 0.0022 7.5E-08 63.8 6.6 72 222-295 21-109 (386)
257 2q8u_A Exonuclease, putative; 96.6 0.0011 3.8E-08 64.6 3.8 72 221-295 18-110 (336)
258 3ffl_A Anaphase-promoting comp 96.6 0.0064 2.2E-07 52.0 8.0 83 9-92 58-165 (167)
259 2ff4_A Probable regulatory pro 96.6 0.031 1.1E-06 55.4 14.2 96 15-110 116-233 (388)
260 1ii7_A MRE11 nuclease; RAD50, 96.5 0.0024 8.3E-08 62.1 5.5 70 223-294 2-88 (333)
261 4h7y_A Dual specificity protei 96.5 0.016 5.5E-07 48.5 9.4 98 42-142 7-118 (161)
262 2uy1_A Cleavage stimulation fa 95.8 0.2 6.7E-06 51.3 15.8 123 13-142 285-408 (493)
263 4g26_A Pentatricopeptide repea 95.7 0.16 5.6E-06 52.0 14.9 99 13-111 104-204 (501)
264 1ya0_A SMG-7 transcript varian 95.7 0.059 2E-06 55.0 11.2 78 50-127 154-231 (497)
265 1zbp_A Hypothetical protein VP 95.4 0.19 6.6E-06 46.4 12.4 63 22-84 5-67 (273)
266 4gns_B Protein CSD3, chitin bi 95.3 0.039 1.3E-06 59.1 8.8 79 30-108 301-397 (754)
267 4fbk_A DNA repair and telomere 95.3 0.019 6.5E-07 57.8 5.8 51 223-274 78-140 (472)
268 4fbw_A DNA repair protein RAD3 95.2 0.019 6.5E-07 57.2 5.6 54 221-275 13-78 (417)
269 3t1i_A Double-strand break rep 95.1 0.018 6.3E-07 57.6 5.2 73 222-295 33-153 (431)
270 3tho_B Exonuclease, putative; 95.1 0.0093 3.2E-07 59.1 2.8 68 223-293 2-90 (379)
271 3kae_A CDC27, possible protein 95.1 0.4 1.4E-05 40.8 12.2 99 15-118 34-150 (242)
272 4g26_A Pentatricopeptide repea 95.0 0.29 9.8E-06 50.2 14.0 113 28-142 84-199 (501)
273 4gns_B Protein CSD3, chitin bi 94.8 0.091 3.1E-06 56.3 9.6 62 13-74 336-397 (754)
274 2qfp_A Purple acid phosphatase 94.6 0.037 1.3E-06 55.5 5.8 71 222-295 120-198 (424)
275 1ya0_A SMG-7 transcript varian 94.5 0.16 5.5E-06 51.8 10.4 80 15-94 153-232 (497)
276 1ute_A Protein (II purple acid 94.1 0.018 6E-07 54.8 2.0 71 223-294 8-95 (313)
277 1xzw_A Purple acid phosphatase 93.9 0.059 2E-06 54.1 5.6 71 222-295 127-205 (426)
278 3txn_A 26S proteasome regulato 93.7 1.1 3.7E-05 44.1 14.1 95 18-112 103-211 (394)
279 4b4t_R RPN7, 26S proteasome re 93.2 0.77 2.6E-05 45.9 12.6 100 14-113 131-239 (429)
280 3kae_A CDC27, possible protein 93.1 2.6 9.1E-05 35.9 13.3 69 12-80 60-146 (242)
281 1zbp_A Hypothetical protein VP 92.6 0.58 2E-05 43.2 9.5 62 57-118 6-67 (273)
282 2ff4_A Probable regulatory pro 92.4 0.51 1.7E-05 46.5 9.8 63 15-77 172-234 (388)
283 3mkq_A Coatomer beta'-subunit; 92.2 1.2 4E-05 47.9 13.2 45 24-73 662-706 (814)
284 4b4t_P 26S proteasome regulato 91.1 3.9 0.00013 40.9 14.8 101 11-111 134-247 (445)
285 3spa_A Mtrpol, DNA-directed RN 90.4 4.6 0.00016 44.6 15.0 102 11-112 124-231 (1134)
286 3tgh_A Glideosome-associated p 89.7 0.094 3.2E-06 50.9 1.3 72 223-295 5-87 (342)
287 3qfk_A Uncharacterized protein 88.7 0.21 7E-06 51.6 3.1 66 223-293 21-112 (527)
288 3mkq_A Coatomer beta'-subunit; 88.3 2.1 7.1E-05 45.9 10.9 121 18-156 633-762 (814)
289 3txn_A 26S proteasome regulato 88.3 3.7 0.00013 40.3 11.6 100 13-112 18-169 (394)
290 4b4t_S RPN3, 26S proteasome re 87.9 0.6 2E-05 47.4 5.7 103 13-117 180-305 (523)
291 4fhn_B Nucleoporin NUP120; pro 86.8 1.3 4.5E-05 50.1 8.4 92 15-106 843-962 (1139)
292 3mkq_B Coatomer subunit alpha; 85.8 8.4 0.00029 33.1 11.0 49 22-75 13-61 (177)
293 2z1a_A 5'-nucleotidase; metal- 85.4 0.47 1.6E-05 49.2 3.6 67 223-294 31-119 (552)
294 1hp1_A 5'-nucleotidase; metall 85.0 0.32 1.1E-05 50.0 2.0 66 223-293 10-94 (516)
295 3mkq_B Coatomer subunit alpha; 84.3 7.1 0.00024 33.6 9.9 83 13-108 33-115 (177)
296 4fhn_B Nucleoporin NUP120; pro 82.1 5.9 0.0002 44.8 11.0 92 20-115 818-932 (1139)
297 4h2g_A 5'-nucleotidase; dimer, 80.3 1.1 3.8E-05 46.3 3.9 66 223-293 27-117 (546)
298 3ztv_A NAD nucleotidase, NADN; 78.2 1.4 4.8E-05 45.9 3.9 66 223-293 14-105 (579)
299 4b4t_R RPN7, 26S proteasome re 76.5 3.5 0.00012 41.1 6.1 66 47-112 130-198 (429)
300 2w2u_A Hypothetical P60 katani 75.2 2.5 8.4E-05 31.5 3.5 33 10-42 15-47 (83)
301 1t71_A Phosphatase, conserved 71.6 1.6 5.6E-05 40.7 2.1 69 223-296 6-77 (281)
302 4gq2_M Nucleoporin NUP120; bet 70.4 26 0.00089 38.6 11.8 94 20-117 816-933 (950)
303 2wdc_A SOXB, sulfur oxidation 69.5 1.7 6E-05 45.0 2.0 36 252-293 126-166 (562)
304 4b4t_S RPN3, 26S proteasome re 69.0 8.3 0.00028 39.1 6.7 71 9-81 226-303 (523)
305 3gve_A YFKN protein; alpha-bet 69.0 2.5 8.5E-05 40.7 2.8 43 223-265 13-71 (341)
306 3ive_A Nucleotidase; structura 68.6 2.2 7.6E-05 43.6 2.6 31 399-429 217-248 (509)
307 1wy6_A Hypothetical protein ST 67.3 20 0.00067 29.5 7.2 79 28-111 75-154 (172)
308 3t5x_A PCI domain-containing p 67.3 12 0.00042 32.9 6.8 41 8-48 8-48 (203)
309 3jyf_A 2',3'-cyclic nucleotide 67.3 3.2 0.00011 40.0 3.2 14 403-416 231-244 (339)
310 1wy6_A Hypothetical protein ST 66.8 23 0.0008 29.1 7.6 115 19-140 12-147 (172)
311 1qsa_A Protein (soluble lytic 65.8 14 0.00048 38.6 7.9 114 17-131 217-334 (618)
312 2v6y_A AAA family ATPase, P60 65.4 10 0.00036 28.0 5.0 31 12-42 9-39 (83)
313 1qsa_A Protein (soluble lytic 65.0 26 0.00089 36.5 9.8 94 16-110 254-347 (618)
314 3c9f_A 5'-nucleotidase; 2',3'- 64.5 2.5 8.6E-05 43.7 2.0 68 223-295 17-108 (557)
315 2cfu_A SDSA1; SDS-hydrolase, l 63.3 13 0.00045 39.1 7.3 46 17-62 452-497 (658)
316 3ax2_A Mitochondrial import re 60.2 28 0.00097 25.0 6.3 35 86-120 21-55 (73)
317 4a5x_A MITD1, MIT domain-conta 60.0 14 0.00049 27.4 5.0 32 12-43 14-45 (86)
318 3spa_A Mtrpol, DNA-directed RN 59.7 57 0.002 36.1 11.4 81 49-130 128-214 (1134)
319 3ax2_A Mitochondrial import re 59.5 22 0.00074 25.6 5.6 32 19-50 22-53 (73)
320 4gq2_M Nucleoporin NUP120; bet 56.9 22 0.00076 39.2 8.0 69 14-82 840-932 (950)
321 2v6x_A Vacuolar protein sortin 56.5 20 0.00067 26.5 5.2 34 10-43 9-42 (85)
322 1wfd_A Hypothetical protein 15 54.4 20 0.00069 27.0 5.0 32 11-42 12-43 (93)
323 3re2_A Predicted protein; meni 53.7 1.4E+02 0.0048 28.6 11.5 93 47-139 254-359 (472)
324 2crb_A Nuclear receptor bindin 52.3 30 0.001 25.9 5.4 30 11-40 12-41 (97)
325 4b4t_P 26S proteasome regulato 52.1 1.1E+02 0.0037 30.2 11.6 70 8-77 171-247 (445)
326 3u84_A Menin; MLL, JUND, ledgf 51.8 1.8E+02 0.0062 28.4 12.1 104 8-126 251-368 (550)
327 2cpt_A SKD1 protein, vacuolar 51.8 21 0.00071 28.3 4.9 30 12-41 16-45 (117)
328 2crb_A Nuclear receptor bindin 51.5 24 0.00082 26.5 4.8 29 48-76 15-43 (97)
329 3t5v_B Nuclear mRNA export pro 50.3 38 0.0013 33.7 7.7 87 29-115 141-254 (455)
330 3esl_A Checkpoint serine/threo 50.2 91 0.0031 27.2 9.2 78 35-113 58-146 (202)
331 3lpz_A GET4 (YOR164C homolog); 50.0 1.7E+02 0.0059 27.6 12.4 29 12-40 33-61 (336)
332 2wpv_A GET4, UPF0363 protein Y 48.9 1.7E+02 0.0059 27.3 11.8 26 81-106 133-158 (312)
333 3esl_A Checkpoint serine/threo 47.2 1.4E+02 0.0047 26.0 9.9 71 8-79 74-146 (202)
334 2ijq_A Hypothetical protein; s 47.1 1.2E+02 0.0041 25.3 9.2 56 55-110 39-103 (161)
335 4gq4_A Menin; tumor suppressor 46.5 2.2E+02 0.0075 27.8 12.1 63 66-128 282-355 (489)
336 2cfu_A SDSA1; SDS-hydrolase, l 46.2 33 0.0011 36.1 6.9 46 51-96 452-497 (658)
337 3t5x_A PCI domain-containing p 45.4 51 0.0017 28.8 7.0 33 49-81 15-47 (203)
338 1t70_A Phosphatase; crystal, X 43.9 24 0.00084 32.1 4.8 65 223-294 2-69 (255)
339 2rpa_A Katanin P60 ATPase-cont 43.8 28 0.00096 25.3 4.1 31 13-43 11-41 (78)
340 1om2_A Protein (mitochondrial 41.6 33 0.0011 26.0 4.3 30 19-48 25-54 (95)
341 2ijq_A Hypothetical protein; s 40.9 1.1E+02 0.0038 25.5 8.0 62 15-76 33-103 (161)
342 2vkj_A TM1634; membrane protei 39.3 67 0.0023 23.9 5.4 32 12-43 51-82 (106)
343 4h1s_A 5'-nucleotidase; hydrol 39.3 18 0.00062 36.9 3.5 38 252-294 54-96 (530)
344 1om2_A Protein (mitochondrial 38.3 48 0.0016 25.1 4.8 31 87-117 25-55 (95)
345 2z06_A Putative uncharacterize 36.0 34 0.0012 31.1 4.4 66 223-295 2-70 (252)
346 2yhe_A SEC-alkyl sulfatase; hy 40.3 8.6 0.00029 40.6 0.0 49 52-100 465-513 (668)
347 2yeq_A Apased, PHOD, alkaline 32.6 57 0.0019 33.2 5.9 24 394-417 358-383 (527)
348 3re2_A Predicted protein; meni 30.8 1.2E+02 0.0042 29.0 7.2 45 33-77 276-325 (472)
349 2w2u_A Hypothetical P60 katani 29.2 83 0.0029 23.0 4.8 12 65-76 17-28 (83)
350 2rpa_A Katanin P60 ATPase-cont 28.1 51 0.0017 23.9 3.3 27 85-111 15-41 (78)
351 4b4t_O 26S proteasome regulato 28.0 3.7E+02 0.013 25.8 10.7 89 23-111 85-198 (393)
352 2wvi_A Mitotic checkpoint seri 27.1 2.1E+02 0.0071 23.9 7.5 60 48-113 66-127 (164)
353 3t5v_B Nuclear mRNA export pro 27.0 1.1E+02 0.0038 30.3 6.7 61 21-81 183-254 (455)
354 2v6y_A AAA family ATPase, P60 27.0 96 0.0033 22.6 4.8 12 66-77 10-21 (83)
355 4a5x_A MITD1, MIT domain-conta 26.2 1E+02 0.0034 22.7 4.8 16 60-75 28-43 (86)
356 2dl1_A Spartin; SPG20, MIT, st 24.8 55 0.0019 25.7 3.2 15 30-44 19-33 (116)
357 2cwy_A Hypothetical protein TT 24.0 1.9E+02 0.0065 21.6 6.1 25 20-44 7-31 (94)
358 4a1g_A Mitotic checkpoint seri 23.4 1.7E+02 0.0057 24.2 6.1 60 48-113 71-132 (152)
359 3myv_A SUSD superfamily protei 23.4 1.8E+02 0.0061 28.7 7.6 47 64-110 164-218 (454)
360 3myv_A SUSD superfamily protei 23.3 1.7E+02 0.0059 28.8 7.5 47 31-77 165-219 (454)
361 3lew_A SUSD-like carbohydrate 23.3 1.7E+02 0.0059 29.2 7.5 48 64-111 174-232 (495)
362 3u84_A Menin; MLL, JUND, ledgf 22.7 1.3E+02 0.0045 29.3 5.9 46 32-77 297-347 (550)
363 3lew_A SUSD-like carbohydrate 21.9 1.9E+02 0.0064 28.9 7.5 30 48-77 203-232 (495)
364 1wfd_A Hypothetical protein 15 21.9 1.3E+02 0.0045 22.4 4.8 10 66-75 14-23 (93)
365 4gq4_A Menin; tumor suppressor 21.5 5.4E+02 0.018 25.2 9.8 57 33-89 283-350 (489)
366 3kez_A Putative sugar binding 21.4 1.9E+02 0.0065 28.5 7.3 30 82-111 196-225 (461)
367 2v6x_A Vacuolar protein sortin 21.4 1.4E+02 0.0047 21.7 4.8 14 62-75 27-40 (85)
368 3kez_A Putative sugar binding 21.3 1.9E+02 0.0065 28.5 7.3 23 116-140 196-218 (461)
369 2cwy_A Hypothetical protein TT 21.3 2.4E+02 0.0081 21.0 6.1 56 53-110 6-67 (94)
370 2dl1_A Spartin; SPG20, MIT, st 21.2 1.4E+02 0.0049 23.3 4.9 25 51-75 25-49 (116)
371 2yhe_A SEC-alkyl sulfatase; hy 25.8 21 0.00073 37.5 0.0 51 82-132 461-511 (668)
No 1
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=100.00 E-value=3.8e-92 Score=733.69 Aligned_cols=471 Identities=58% Similarity=0.999 Sum_probs=441.3
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.++.+.+++.+|..++.+|++++|++.|++|++++|+++.++.++|.++..+|++++|++++++|++++|+++.+++++|
T Consensus 2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 81 (477)
T 1wao_1 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 81 (477)
T ss_dssp CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcccc
Q 011451 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE 169 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~ 169 (485)
.+|..+|++++|++.|+++++++|+++.++..++.+.....++++++|+..++... ........++++++|.+.++.+.
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~al~~~~~~~~~~~~ 160 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR-SVVDSLDIESMTIEDEYSGPKLE 160 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CC-STTTCCTTSSCCCCTTCCSCCCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc-hhHhhhhhhhccccccccccccc
Confidence 99999999999999999999999999999999999966677777899999887432 22334455888999999999888
Q ss_pred CCcccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCC
Q 011451 170 GDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 249 (485)
Q Consensus 170 ~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~ 249 (485)
...++...++.+++.++....+++.++..++.++.+++.++|+++++..|.+.+++|+|||||++.+|.++|+..++++.
T Consensus 161 ~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e~~~~~~~~~~~~~~~vigDiHG~~~~l~~~l~~~~~~~~ 240 (477)
T 1wao_1 161 DGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSE 240 (477)
T ss_dssp GGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCSSCEEEEECBCTTCHHHHHHHHHHHCCCBT
T ss_pred cccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccCCCeEEeecCCCcceEEEeCCCCCHHHHHHHHHHcCCCCC
Confidence 76688999999999999999999999999999999999999999999988888899999999999999999999999877
Q ss_pred CCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccc
Q 011451 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 329 (485)
Q Consensus 250 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~ 329 (485)
.+.|||+|||||||++|+||+.+|++||+.+|.+|++||||||.+.++..|||..|+.++|+..+|..+.++|++||+++
T Consensus 241 ~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lp~~~ 320 (477)
T 1wao_1 241 TNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQ 320 (477)
T ss_dssp TBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCTTHHHHHHHHHTTSCSEE
T ss_pred cCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHHHHhhhcChHHHHHHHhhHHHHHHHHHHhccCCcEE
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcE
Q 011451 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDL 409 (485)
Q Consensus 330 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~ 409 (485)
++++++||||||+|+|...++++|+++.|+.++++.+.++|+|||||....++.+++||.|+.||++++++||+++|+++
T Consensus 321 ~~~~~~~~vHgg~~~~~~~~l~~i~~~~r~~~~~~~~~~~dllWsdp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~ 400 (477)
T 1wao_1 321 CINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDY 400 (477)
T ss_dssp EETTTEEECSSCCCSSSCCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSCEECTTSSSEEECHHHHHHHHHHTTCCE
T ss_pred EEcCcEEEECCCCCccccCCHHHHHhccCCCCCchhhhhhhhccCCCCccCCcCcCCCCCceeECHHHHHHHHHHcCCeE
Confidence 99999999999998888899999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCccccchhh
Q 011451 410 VVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYANNFL 481 (485)
Q Consensus 410 iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (485)
||||||++++||+++++++|||||||||||+.++|.||+|.|++++++++|++|+++|+|.++||+||.+++
T Consensus 401 iir~H~~~~~g~~~~~~~~~~tvfsa~~y~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (477)
T 1wao_1 401 IIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYANTLL 472 (477)
T ss_dssp EEECCSCCTEEEEEEGGGTEEEEBCCTTTTSSSCCEEEEEEEETTEEEEEEEEECCCCCCSCCTTCSSCHHH
T ss_pred EEECCCCCcCCeEEecCCeEEEEeCCcccccCCCccEEEEEEECCCCeEEEEEEeCCCCCCCChhhhhhhhh
Confidence 999999999999999999999999999999999999999999767899999999999999999999998887
No 2
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=100.00 E-value=1.5e-83 Score=618.70 Aligned_cols=315 Identities=60% Similarity=1.078 Sum_probs=304.0
Q ss_pred CCCccccCCcccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHH
Q 011451 163 YSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFE 242 (485)
Q Consensus 163 ~~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~ 242 (485)
|.++++..+.++.++++++++.+++++.++++++..+|.+++++|.++|+++++..|.+.+++|+|||||++.+|.++|+
T Consensus 1 y~gp~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~l~~p~~~ri~viGDIHG~~~~L~~ll~ 80 (315)
T 3h63_A 1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFE 80 (315)
T ss_dssp CCSCCCBTTBCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCCTTCEEEEECCCTTCHHHHHHHHH
T ss_pred CCCCcCCCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEEecCCCceEEEEecCCCCHHHHHHHHH
Confidence 35667776669999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred HcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHh
Q 011451 243 LNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVF 322 (485)
Q Consensus 243 ~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f 322 (485)
..++++.++.|||+|||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||.+||.++|+..+|+.+.++|
T Consensus 81 ~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~ygf~~e~~~k~~~~l~~~~~~~f 160 (315)
T 3h63_A 81 LNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVF 160 (315)
T ss_dssp HHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCcccccccccccccHHHHHHhhhHHHHHHHHHH
Confidence 99998877779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHH
Q 011451 323 CCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFL 402 (485)
Q Consensus 323 ~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl 402 (485)
++||+++++++++||||||+++|...++++|++++|+.+++++++++|+|||||....||.+++||+|+.||++++++||
T Consensus 161 ~~LPla~ii~~~il~vHGGl~sp~~~~l~~i~~i~R~~~~p~~g~~~dllWsDP~~~~g~~~s~RG~g~~fg~~~~~~fl 240 (315)
T 3h63_A 161 EWLPLAQCINGKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFL 240 (315)
T ss_dssp TTSCSEEEETTTEEECSSCCCSSTTCCHHHHHHCCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHH
T ss_pred hcCCcEEEEcCCEEEeCCCCCCcccCCHHHHHhCcccccccccchhhhheecCCCCCCCcCcCCCCceEEECHHHHHHHH
Confidence 99999999999999999999889999999999999999999999999999999998889999999999999999999999
Q ss_pred HHCCCcEEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCcccc
Q 011451 403 QDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAYA 477 (485)
Q Consensus 403 ~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (485)
++||+++||||||++++||+++++++|||||||||||+.++|.||+|.|+++++++.|+||+++|+|.++||+||
T Consensus 241 ~~n~l~~iiR~Hq~~~~Gy~~~~~~~~iTvfSapnY~~~~~N~~a~~~~~~~~~~~~~~~f~~~~~~~~~p~~~~ 315 (315)
T 3h63_A 241 EENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYA 315 (315)
T ss_dssp HHHTCSEEEECCSCCTTSEEEEGGGTEEEECCCTTGGGTSCCCEEEEEEETTEEEEEEEEECCCCCCSCCTTTTC
T ss_pred HHcCCcEEEEeceeecCCeEEecCCeEEEEECCcccCCCCCccEEEEEEECCCCeEeeEEEecCCCCCCCCcCCC
Confidence 999999999999999999999999999999999999999999999999966789999999999999999999997
No 3
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-83 Score=621.89 Aligned_cols=320 Identities=48% Similarity=0.862 Sum_probs=293.7
Q ss_pred CCCCCccccCCcccHHHHHHHH-HhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCC--CCCceeEecccCCCHHHH
Q 011451 161 PQYSGARIEGDVITLDFVKKMM-DDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIP--DGKHFTVCGDVHGQFYDL 237 (485)
Q Consensus 161 ~~~~~~~l~~~~l~~~~l~~li-e~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~--~~~~~~v~GDihG~~~dl 237 (485)
+.|.++++.. ++.+++++++ +++++++.++++++..+|.+++++|.++|+++++..| .+.+++|+|||||++.+|
T Consensus 2 ~~y~g~~~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~~~~l~~p~~~~~ri~viGDIHG~~~~L 79 (335)
T 3icf_A 2 NAFKGAKIKN--MSQEFISKMVNDLFLKGKYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQFYDV 79 (335)
T ss_dssp ------------CCHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHHHHTSCSEEEECCSSSTTCEEEEECCCTTCHHHH
T ss_pred CCCCCCccCC--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEEecCCcccCceEEEEecCCCCHHHH
Confidence 4566777765 5899999999 9999999999999999999999999999999999988 777899999999999999
Q ss_pred HHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHH
Q 011451 238 LNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVEL 317 (485)
Q Consensus 238 ~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~ 317 (485)
.++|+..++++..+.|||+|||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||.+||.++|+..+|+.
T Consensus 80 ~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygf~~e~~~k~~~~l~~~ 159 (335)
T 3icf_A 80 LNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFEDECKYKYSQRIFNM 159 (335)
T ss_dssp HHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHH
T ss_pred HHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhhhhhhccccchHhHhhccHHHHHH
Confidence 99999999987776799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHH
Q 011451 318 FAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADV 397 (485)
Q Consensus 318 ~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~ 397 (485)
+.++|++||+++++++++|||||||++|...++++|++++|+.+++++++++|+|||||....||.+|+||+|+.||+++
T Consensus 160 ~~~~f~~LPlaaii~~~il~vHGGl~sp~~~~ld~i~~i~R~~~~p~~g~~~dlLWSDP~~~~g~~~s~RG~g~~FG~~~ 239 (335)
T 3icf_A 160 FAQSFESLPLATLINNDYLVMHGGLPSDPSATLSDFKNIDRFAQPPRDGAFMELLWADPQEANGMGPSQRGLGHAFGPDI 239 (335)
T ss_dssp HHHHHTTSCSEEEETTTEEECSSCCCSCTTCCHHHHHTCCCSSCCCSSSHHHHHHHCEECSSSSEEECCCC--EEECHHH
T ss_pred HHHHHhhcceeEEEcCcEEEecCCcCCCccCCHHHHHhCccccccccccchhhhhccCCCCcCCcccCCCCCceeeCHHH
Confidence 99999999999999999999999998899999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHCCCcEEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecC-----------CCceeEEEEecc
Q 011451 398 TKRFLQDNSLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAP-----------TLKPNIVTFAAV 466 (485)
Q Consensus 398 ~~~fl~~~~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~-----------~~~~~~~~~~~~ 466 (485)
+++||++||+++||||||++++||+++++++|||||||||||+.++|.||+|.| ++ ++++.|+||+++
T Consensus 240 ~~~fl~~n~l~~IiR~Hq~~~~Gy~~~~~~~liTvfSapnYc~~~~N~~a~~~i-~~~~~~~~~~~~~~~~~~~~~f~~~ 318 (335)
T 3icf_A 240 TDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLGGVIHV-VPGHGILQAGRNDDQNLIIETFEAV 318 (335)
T ss_dssp HHHHHHHTTCSEEEECSSCCTEEEEEEGGGTEEEECCCTTGGGTSCCEEEEEEE-CTTCCCCBTTTBCCTTEEEEEECCC
T ss_pred HHHHHHHCCCeEEEEcCceecCeEEEecCCcEEEEECCcccCCCCCCceEEEEE-ecccccccccccccCceeEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999 55 789999999999
Q ss_pred CCCCCCCccccchhhhc
Q 011451 467 PHPDVKPMAYANNFLRM 483 (485)
Q Consensus 467 ~~~~~~~~~~~~~~~~~ 483 (485)
|+|.++||+||.+++.|
T Consensus 319 ~~~~~~p~~y~~~~~~~ 335 (335)
T 3icf_A 319 EHPDIKPMAYSNGGFGL 335 (335)
T ss_dssp CCCSCCTTTTC------
T ss_pred CCCCCCchhhcccccCC
Confidence 99999999999888765
No 4
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=100.00 E-value=3.1e-76 Score=572.95 Aligned_cols=289 Identities=41% Similarity=0.747 Sum_probs=273.4
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 011451 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (485)
Q Consensus 178 l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflG 257 (485)
++.+++++++.+.++++++..+|.+++++|.++|+++++..+ ++|+|||||++.+|.++|+..+.++.+ .|+|+|
T Consensus 30 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~p----i~ViGDIHG~~~dL~~ll~~~g~~~~~-~~vfLG 104 (357)
T 3ll8_A 30 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPANT-RYLFLG 104 (357)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTTC-CEEECS
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEEeccc----ceeeccCCCCHHHHHHHHHhcCCCCCc-EEEECC
Confidence 777899999999999999999999999999999999999875 999999999999999999998887654 699999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccceeCCcEEE
Q 011451 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 337 (485)
Q Consensus 258 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~ 337 (485)
||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||.+||.++|+..+|+.+.++|++||+++++++++||
T Consensus 105 D~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il~ 184 (357)
T 3ll8_A 105 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 184 (357)
T ss_dssp CCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHHTSCSEEEETTTEEE
T ss_pred CccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhhhhhcccCchhhhhhccchhHHHHHHHHHHhCCcceEEcccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCC-------CC-cCCCCCccccCHHHHHHHHHHCCCcE
Q 011451 338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPG-------RG-PSKRGVGLSFGADVTKRFLQDNSLDL 409 (485)
Q Consensus 338 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~-------~~-~~~rg~~~~fg~~~~~~fl~~~~~~~ 409 (485)
||||| ||...++++|++++|+.++++.+.++|+|||||....+ |. +++||+|+.||++++++||++||+++
T Consensus 185 vHGGl-sp~l~~ld~I~~i~R~~e~p~~g~~~DlLWSDP~~~~~~~~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~ 263 (357)
T 3ll8_A 185 VHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 263 (357)
T ss_dssp CSSCC-CTTCCSHHHHHTCCCSSCCCSSSHHHHHHHCEECTTTTSCSCCCSEEECTTTTSSEEECHHHHHHHHHHTTCSE
T ss_pred EecCc-CcccCCHHHHhhccccccCCccCchhHhhccCccccccccccccccccCCCCCCceEEChHHHHHHHHHCCCeE
Confidence 99999 89999999999999999999999999999999997654 33 57899999999999999999999999
Q ss_pred EEeeccccccCcEEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCc
Q 011451 410 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPM 474 (485)
Q Consensus 410 iir~h~~~~~G~~~~~~~------~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (485)
||||||++++||++++++ +|||||||||||+.++|.||+|.| +++ .+.|.||+++|+|.++|-
T Consensus 264 IiRaHq~~~~Gy~~~~~~~~~g~~~liTvFSApnYc~~~~N~~a~l~~-~~~-~~~~~~f~~~~hp~~~p~ 332 (357)
T 3ll8_A 264 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLPN 332 (357)
T ss_dssp EEECCSCCTTSEEECCBCTTTSSBSEEEECCCTTGGGTSCCCEEEEEE-ETT-EEEEEEECCCCCCCCCGG
T ss_pred EEEeccccccceEEecCCcCCCCCcEEEEECCCccCCCCCccEEEEEE-ECC-cceEEEecCCCCCCcCCC
Confidence 999999999999999876 799999999999999999999999 444 368999999999999985
No 5
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=100.00 E-value=2.8e-75 Score=557.15 Aligned_cols=282 Identities=40% Similarity=0.808 Sum_probs=266.7
Q ss_pred HHHHHHhhhhcc--------cchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCC
Q 011451 178 VKKMMDDFKNQK--------CLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 249 (485)
Q Consensus 178 l~~lie~l~~~~--------~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~ 249 (485)
++.+++.+.+.. .++++++..+|.+++++|.++|+++++..| ++|+|||||++.+|.++|+..++++.
T Consensus 8 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~ll~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~ 83 (299)
T 3e7a_A 8 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE 83 (299)
T ss_dssp HHHHHHHHHTTTTSCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred HHHHHHHHHhccccCCCcccCCCHHHHHHHHHHHHHHHHhCCCeeecCCC----EEEEecCCCCHHHHHHHHHHhCCCCC
Confidence 556666654322 578899999999999999999999999875 99999999999999999999998875
Q ss_pred CCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccc
Q 011451 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 329 (485)
Q Consensus 250 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~ 329 (485)
+ .|||+|||||||++|+||+.+|+++|+.+|++|++||||||.+.++..|||.+||.++|+..+|+.+.++|++||+++
T Consensus 84 ~-~~vfLGD~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~i~~~ygF~~e~~~ky~~~l~~~~~~~f~~LPlaa 162 (299)
T 3e7a_A 84 S-NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA 162 (299)
T ss_dssp S-CEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred c-cEEeCCcccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhhhhcccccchHHHHHHhhHHHHHHHHHHHhhCCceE
Confidence 5 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCC-CCCCCcCCCCCccccCHHHHHHHHHHCCCc
Q 011451 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQP-LPGRGPSKRGVGLSFGADVTKRFLQDNSLD 408 (485)
Q Consensus 330 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~-~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~ 408 (485)
++++++||||||| ||...++++|++++||.++++.++++|+|||||.. ..+|.+|+||+|+.||++++++||++||++
T Consensus 163 ii~~~il~vHGGl-sp~~~~l~~i~~i~R~~~~p~~~~~~dllWsDP~~~~~~~~~~~RG~~~~fG~~~~~~fl~~n~l~ 241 (299)
T 3e7a_A 163 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD 241 (299)
T ss_dssp EETTTEEEESSCC-CTTCCCTHHHHTCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTCS
T ss_pred EECCeEEEEcCcc-CcccCCHHHHHhccCCCcCCcchhhhhhhcCCccccccCcccCCCCcceeeCHHHHHHHHHHCCCe
Confidence 9999999999999 89999999999999999999999999999999996 468999999999999999999999999999
Q ss_pred EEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEecc
Q 011451 409 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAV 466 (485)
Q Consensus 409 ~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~ 466 (485)
+||||||++++||++++++||||||||||||+.++|.||+|.| ++++.+.|++|++.
T Consensus 242 ~IiR~Hq~v~~Gy~~~~~~~~iTvfSapnY~~~~~N~~a~l~~-~~~~~~~~~~~~~~ 298 (299)
T 3e7a_A 242 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKPA 298 (299)
T ss_dssp EEEECCSCCTTSEEEETTTTEEEEBCCSSGGGTCCCCEEEEEE-CTTCCEEEEEECCC
T ss_pred EEEEcCeeeecceEEecCCeEEEEECCcccCCCCCccEEEEEE-CCCCcEEEEEecCC
Confidence 9999999999999999999999999999999999999999999 99999999999764
No 6
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=100.00 E-value=1.3e-71 Score=559.68 Aligned_cols=291 Identities=41% Similarity=0.730 Sum_probs=273.8
Q ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcc
Q 011451 178 VKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNG 257 (485)
Q Consensus 178 l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflG 257 (485)
++.+++++++.+.++++++..+|.+++++|.++|+++++..+ ++|+|||||++.+|.++|+..+.++. +.|||||
T Consensus 43 ~d~l~~~~~~~~~l~~~~i~~L~~~a~~il~~Ep~ll~l~~p----I~VIGDIHGq~~dL~~LL~~~g~p~~-d~yVFLG 117 (521)
T 1aui_A 43 VDILKAHLMKEGRLEESVALRIITEGASILRQEKNLLDIDAP----VTVCGDIHGQFFDLMKLFEVGGSPAN-TRYLFLG 117 (521)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHTSCSEEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTT-CCEEECS
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCCCeEeeccc----eeeccCCCCCHHHHHHHHHhcCCCCc-ceEEEcC
Confidence 778899999999999999999999999999999999999865 99999999999999999998887764 5699999
Q ss_pred cccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccceeCCcEEE
Q 011451 258 DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFV 337 (485)
Q Consensus 258 D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~ 337 (485)
||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||..||..+|+..+|+.+.+||++||+++++++++||
T Consensus 118 DyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~~l~~~ygF~~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il~ 197 (521)
T 1aui_A 118 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLC 197 (521)
T ss_dssp CCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHHHHHHHSCHHHHHHHHHHHTTSCCEEEETTTEEE
T ss_pred CcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHHHHHHHhCccHHHHHhhhhHHHHHHHHHHHhCCceEEecCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCC-------CCCc-CCCCCccccCHHHHHHHHHHCCCcE
Q 011451 338 VHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLP-------GRGP-SKRGVGLSFGADVTKRFLQDNSLDL 409 (485)
Q Consensus 338 vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~-------~~~~-~~rg~~~~fg~~~~~~fl~~~~~~~ 409 (485)
||||+ +|...++++|++|+|+.+++..++++|||||||.... +|.+ +.||+|+.||++++++||++||+++
T Consensus 198 VHGGl-sP~~~sld~I~~I~R~~e~p~~g~~~DLLWSDP~~~~g~~~~~~~f~~ns~RG~g~~FG~d~v~~FL~~n~l~l 276 (521)
T 1aui_A 198 VHGGL-SPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLS 276 (521)
T ss_dssp ESSCC-CTTCCSHHHHHHSCCSSSCCSSSHHHHHHHCEECTTTTSCSSCCCEEECTTTTSSEEECHHHHHHHHHHTTCSE
T ss_pred ECCCc-CcccCCHHHhhhccCCcCCCccchhhhheecCccccccccccCcceecccCCCcccccCHHHHHHHHHHcCCcE
Confidence 99999 8999999999999999999999999999999998763 3444 4899999999999999999999999
Q ss_pred EEeeccccccCcEEecCC------eEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCCCCCccc
Q 011451 410 VVRSHEVKDEGYEIEHDG------KLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPDVKPMAY 476 (485)
Q Consensus 410 iir~h~~~~~G~~~~~~~------~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (485)
||||||++++||++++++ +|||||||||||+.++|.||||.| +++ .+.|.+|+++|+|.++|.-+
T Consensus 277 IIRaHq~v~~Gy~~~~~~~~~g~~kliTVFSApNYc~~~~N~gAvl~i-~~~-~~~~~~f~~~~~p~~~P~~~ 347 (521)
T 1aui_A 277 ILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKY-ENN-VMNIRQFNCSPHPYWLPNFM 347 (521)
T ss_dssp EEECCSCCTTSEEECCBCTTTSSBSEEEECCCSSGGGTSCCCEEEEEE-ETT-EEEEEEECCCCCCCCCGGGC
T ss_pred EEEccchhccceeeecCCcCCCCCeEEEEeCCcccCCCCCceEEEEEE-eCC-cceEEEecCCCCCCcCcccc
Confidence 999999999999999987 699999999999999999999999 555 68899999999999999643
No 7
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=100.00 E-value=1.5e-70 Score=531.04 Aligned_cols=291 Identities=38% Similarity=0.707 Sum_probs=275.1
Q ss_pred ccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCC
Q 011451 173 ITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENP 252 (485)
Q Consensus 173 l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~ 252 (485)
++...++.+++.++....++++++..+|.+++++|.++|+++++..+ ++|+|||||++.+|.++|+..+.++.+ .
T Consensus 5 ~~~~~~~~~i~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~~~~~----i~viGDIHG~~~~L~~ll~~~~~~~~~-~ 79 (309)
T 2ie4_C 5 VFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCP----VTVCGDVHGQFHDLMELFRIGGKSPDT-N 79 (309)
T ss_dssp -CHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHSCTTEEECSS----EEEECCCTTCHHHHHHHHHHHCCTTTS-C
T ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCEEeccCC----EEEEecCCCCHHHHHHHHHHcCCCCCC-E
Confidence 34567899999999999999999999999999999999999999865 999999999999999999999987654 5
Q ss_pred eEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhc-HHHHHHHHHHhcccccccee
Q 011451 253 YLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLS-ETFVELFAEVFCCLPLAHVL 331 (485)
Q Consensus 253 ~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~-~~~~~~~~~~f~~lPl~~~i 331 (485)
+||+|||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||.+|+.++|+ ..+|+.+.++|++||+++++
T Consensus 80 ~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~yg~~~l~~~~~~~~~~LPl~~~i 159 (309)
T 2ie4_C 80 YLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALV 159 (309)
T ss_dssp EEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSTTGGGTSSHHHHHHHHSSSTHHHHHHHHHTTSSCSCEEE
T ss_pred EEEeCCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCHHHHhhhhhhhHHHHhhcccHHHHHHHHHHHHhCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999996 57999999999999999999
Q ss_pred CCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEE
Q 011451 332 NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVV 411 (485)
Q Consensus 332 ~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~ii 411 (485)
+++++|||||+ +|...++++|++++|+.++++.+.++|+|||||....+|.+++||.|+.||++++++||++||+++||
T Consensus 160 ~~~il~vHgGl-~p~~~~~~~i~~i~r~~~~~~~~~~~dllWsdp~~~~~~~~s~RG~g~~fG~~~~~~fl~~n~l~~ii 238 (309)
T 2ie4_C 160 DGQIFCLHGGL-SPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVS 238 (309)
T ss_dssp TTTEEECSSCC-CTTCCSHHHHHTSCCSSCCCSSSHHHHHHHCEECSSSSEEECTTSSSEEECHHHHHHHHHHTTCSEEE
T ss_pred cCcEEEECCCC-CCcccCHHHHHhhcccccCChhHHHHHHhhCCCccccccccCCCCcccccCHHHHHHHHHHcCCeEEE
Confidence 99999999999 89999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred eeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCCC
Q 011451 412 RSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHPD 470 (485)
Q Consensus 412 r~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
||||++++||++.++++|||||||||||+.++|.||+|.| +++++++|++|+++|+|.
T Consensus 239 r~Hq~~~~G~~~~~~~~~iTvfSa~ny~~~~~N~~a~l~i-~~~~~~~~~~~~~~~~~~ 296 (309)
T 2ie4_C 239 RAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQAAIMEL-DDTLKYSFLQFDPAPRRG 296 (309)
T ss_dssp ECCSCCTEEEEEETTTTEEEECCCSSGGGTSCCEEEEEEE-CTTCCEEEEEECCCC---
T ss_pred ecCcceeCCEEEecCCeEEEEECCcccccCCCCeEEEEEE-CCCCcEeEEEEeCCCCcc
Confidence 9999999999999999999999999999999999999999 889999999999998764
No 8
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=100.00 E-value=1.7e-68 Score=519.41 Aligned_cols=285 Identities=39% Similarity=0.790 Sum_probs=266.5
Q ss_pred HHHHHHhhhh--------cccchHHHHHHHHHHHHHHhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCC
Q 011451 178 VKKMMDDFKN--------QKCLHKRYAFQIVLQTREMLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSE 249 (485)
Q Consensus 178 l~~lie~l~~--------~~~l~~~~~~~ll~~a~~~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~ 249 (485)
++.+++.+.. ...++++++..+|.+++++|.++|+++++..+ ++|+|||||++++|.++|+..++++.
T Consensus 9 ~d~~i~~l~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~l~~~~~~----i~viGDIHG~~~~L~~ll~~~g~~~~ 84 (330)
T 1fjm_A 9 LDSIIGRLLEVQGSRPGKNVQLTENEIRGLCLKSREIFLSQPILLELEAP----LKICGDIHGQYYDLLRLFEYGGFPPE 84 (330)
T ss_dssp HHHHHHHHHHTTTTCTTCCCCCCHHHHHHHHHHHHHHHHHSCSEEEECSS----EEEECBCTTCHHHHHHHHHHHCSTTS
T ss_pred HHHHHHHHHhccccCCcccCCCCHHHHHHHHHHHHHHHHhCCCeEeecCc----eEEecCCCCCHHHHHHHHHHhCCCCc
Confidence 4555555544 24688999999999999999999999999875 99999999999999999999998875
Q ss_pred CCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccc
Q 011451 250 ENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAH 329 (485)
Q Consensus 250 ~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~ 329 (485)
+ .|||+|||||||++|+||+.+|++||+.+|++|++||||||.+.++..|||.+|+.++|+..+|+.+.+||+.||+++
T Consensus 85 ~-~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~e~~~~y~~~l~~~~~~~f~~LPl~~ 163 (330)
T 1fjm_A 85 S-NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAA 163 (330)
T ss_dssp S-CEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHHHHHHHSCHHHHHHHHHHHTTCCCEE
T ss_pred c-eEEeCCCcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchHhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCceE
Confidence 4 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCC-CCCCcCCCCCccccCHHHHHHHHHHCCCc
Q 011451 330 VLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL-PGRGPSKRGVGLSFGADVTKRFLQDNSLD 408 (485)
Q Consensus 330 ~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~-~~~~~~~rg~~~~fg~~~~~~fl~~~~~~ 408 (485)
+++++++|||||+ +|...++++|+.+.|+.++++.++++|+|||||... .+|.++.||.|+.||++++.+||+.++++
T Consensus 164 ~i~~~i~~vHgGl-~p~~~~l~qi~~i~r~~e~~~~g~~~dlLWsdp~~~~~~w~~~~rG~~~~fG~~~~~~fl~~~~l~ 242 (330)
T 1fjm_A 164 IVDEKIFCCHGGL-SPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGAEVVAKFLHKHDLD 242 (330)
T ss_dssp EETTTEEEESSCC-CTTCSCHHHHHHCCSSCCCCSSSHHHHHHHCEECTTCSSEEECTTSSSEEECHHHHHHHHHHHTCS
T ss_pred EEcCcEEEEccCC-CcccCCHHHHhhhhcCccCcccchHHHHHhcCCccccCCcCcccCCCceeeChHHHHHHHHhCCCc
Confidence 9999999999999 889999999999999999889999999999999875 58999999999999999999999999999
Q ss_pred EEEeeccccccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEeccCCC
Q 011451 409 LVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAAVPHP 469 (485)
Q Consensus 409 ~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (485)
+||||||++++||+++++++|||||||||||+.++|.||+|.| +++++++|.+|++.+..
T Consensus 243 liir~Hq~v~~Gy~~~~~~~lvTvfSapnY~~~~~N~ga~l~i-~~~~~~~~~~~~~~~~~ 302 (330)
T 1fjm_A 243 LICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSV-DETLMCSFQILKPADKN 302 (330)
T ss_dssp EEEECCSCCTTSEEEETTTTEEEEBCCTTCCSSSCCCEEEEEE-CTTCCEEEEEECCCC--
T ss_pred eEecccccccCCeEEccCCeEEEEeCCcccccCCCCcEEEEEE-CCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999 89999999999987654
No 9
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=100.00 E-value=1.4e-40 Score=328.97 Aligned_cols=230 Identities=20% Similarity=0.278 Sum_probs=184.7
Q ss_pred hhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCC-------CCCCeEEcccccCCCCChHHHHHHHHhchh-
Q 011451 207 LRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPS-------EENPYLFNGDFVDRGSFSVEVILTLFAFKC- 278 (485)
Q Consensus 207 l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~-------~~~~~vflGD~vdrG~~s~e~l~~l~~lk~- 278 (485)
+..++.++... .+++++||+||++.+|.++|+..+.++ ..+.+||+|||||||++|.||+.+|+.|+.
T Consensus 60 ~~~~~~~~~~~----~~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l~~l~~~ 135 (342)
T 2z72_A 60 KQIMPDTYLGI----KKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQ 135 (342)
T ss_dssp TSCCCSEECCC----CEEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHHHHHHHH
T ss_pred cccCcceecCC----CCEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHHHHHHHH
Confidence 56666666544 359999999999999999999988654 346799999999999999999999999986
Q ss_pred --cCCCcEEEeccCCCcccccc-------ccCchhHHHhhhcHHHHH---HHHHHhccccccceeCCcEEEEeCccccCC
Q 011451 279 --MCPSAIYLSRGNHESKSMNK-------IYGFEGEVRSKLSETFVE---LFAEVFCCLPLAHVLNQKVFVVHGGLFSVD 346 (485)
Q Consensus 279 --~~p~~v~~lrGNHE~~~~~~-------~~~f~~e~~~~~~~~~~~---~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~ 346 (485)
.+|.+|+++|||||.+.++. .|++..++.......+|. ...+||+.||++++++ +++|||||+ +|.
T Consensus 136 ~~~~~~~v~~v~GNHE~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~lP~~~~~~-~~~~vHgGl-~p~ 213 (342)
T 2z72_A 136 ARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKIN-DVLYMHGGI-SSE 213 (342)
T ss_dssp HHHTTCEEEECCCHHHHHHHHTCCTTSCTTHHHHHHHTTSCGGGGGSTTBHHHHHHHTCCSEEEET-TEEEESSCC-CHH
T ss_pred HhhCCCeEEEEecCCcHHHhhCcccccccccchHHHHhcccHHHHHHHhHHHHHHHhhCCeEEEEC-CEEEEECCC-Chh
Confidence 79999999999999998864 234434443222234443 4567899999999988 799999999 665
Q ss_pred C----CChhhhhhccCCC-----CCCCCCcccccccCCCCCCCCCCcCCCCC-ccccCHHHHHHHHHHCCCcEEEeeccc
Q 011451 347 G----VKLSDIKTIDRFC-----EPPEEGLMCELLWSDPQPLPGRGPSKRGV-GLSFGADVTKRFLQDNSLDLVVRSHEV 416 (485)
Q Consensus 347 ~----~~~~~i~~~~r~~-----~~~~~~~~~~llw~dp~~~~~~~~~~rg~-~~~fg~~~~~~fl~~~~~~~iir~h~~ 416 (485)
. .++++|+.+.|+. ++...+.++++||+||... ..||. +..||++++++||+.+++++||||||+
T Consensus 214 ~~~~~~~l~~i~~~~r~~~~~~~~~~~~~~~~~~lwsd~~~~-----w~R~~~~~~fg~~~~~~fl~~~~~~~IV~GHt~ 288 (342)
T 2z72_A 214 WISRELTLDKANALYRANVDASKKSLKADDLLNFLFFGNGPT-----WYRGYFSETFTEAELDTILQHFNVNHIVVGHTS 288 (342)
T ss_dssp HHHTTCCHHHHHHHHHHHTTSCHHHHHHSHHHHHHHSTTSTT-----TCCGGGSTTCCHHHHHHHHHHHTCSEEEECSSC
T ss_pred hcccCCCHHHHHHHhhhhccccccccccCHHHHhccCCCCCC-----CcCCcccccCChHHHHHHHHHCCCcEEEECCCc
Confidence 4 3899999988752 1112345789999998652 25776 578999999999999999999999999
Q ss_pred cccCcEEecCCeEEEEecCCCCCCCCCCeEEEEEEe
Q 011451 417 KDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFE 452 (485)
Q Consensus 417 ~~~G~~~~~~~~~~tvfsa~~y~~~~~n~~a~~~~~ 452 (485)
++. +...+++++|||||+++| +|.++++.|+
T Consensus 289 ~~~-~~~~~~~~~i~Idsg~~~----gg~la~l~i~ 319 (342)
T 2z72_A 289 QER-VLGLFHNKVIAVDSSIKV----GKSGELLLLE 319 (342)
T ss_dssp CSS-CEEETTTTEEECCCCGGG----SSCCCEEEEE
T ss_pred ccc-hhhhcCCCEEEEECCCCC----CCcEEEEEEE
Confidence 865 777789999999999998 4888999994
No 10
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=99.97 E-value=5.9e-33 Score=266.22 Aligned_cols=195 Identities=21% Similarity=0.324 Sum_probs=159.9
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCc
Q 011451 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f 302 (485)
+++++||+||++.+|.++++..+.++..+.+||+|||||||++|.||+.+|.++ |..++++|||||.+.++..+||
T Consensus 2 ~i~vigDiHG~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~~l~~l~~l----~~~~~~v~GNHe~~~l~~~~g~ 77 (280)
T 2dfj_A 2 ATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSL----GDSVRLVLGNHDLHLLAVFAGI 77 (280)
T ss_dssp CEEEECCCCSCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHHHHHHHHHT----GGGEEECCCHHHHHHHHHHTTS
T ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHHHHHHHHhC----CCceEEEECCCcHHHHhHhcCC
Confidence 489999999999999999999988656678999999999999999999999887 4689999999999999998988
Q ss_pred hhHHHhh-----hcHHHHHHHHHHhccccccceeCC-cEEEEeCccccCCCCChhhhhhccCCCC----CCCCCcccccc
Q 011451 303 EGEVRSK-----LSETFVELFAEVFCCLPLAHVLNQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCE----PPEEGLMCELL 372 (485)
Q Consensus 303 ~~e~~~~-----~~~~~~~~~~~~f~~lPl~~~i~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~----~~~~~~~~~ll 372 (485)
..+.... +.......+.+||+.||+++.+++ +++|||||+ +|.. +++++..+.|+.+ .++.+.+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHaGi-~p~~-~l~~~~~~~r~~e~~l~~~~~~~~~~~l 155 (280)
T 2dfj_A 78 SRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGI-TPQW-DLQTAKECARDVEAVLSSDSYPFFLDAM 155 (280)
T ss_dssp SCCCGGGCCHHHHTSTTHHHHHHHHHTSCSEEEETTTTEEEESSCC-CTTC-CHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred cccchhhhHHHHhhhhHHHHHHHHHHhCCcEEEECCCeEEEEeCCC-CcCc-CHHHHHHHHHHHHHhhcCCcHHHHHHHh
Confidence 6431111 111234567799999999998888 999999999 6766 7999888877632 34445678999
Q ss_pred cCCCCCCCCCCcCCCCCc-cccCHHH--HHHHHHHCC-CcEEEeec-cccccCcEEec
Q 011451 373 WSDPQPLPGRGPSKRGVG-LSFGADV--TKRFLQDNS-LDLVVRSH-EVKDEGYEIEH 425 (485)
Q Consensus 373 w~dp~~~~~~~~~~rg~~-~~fg~~~--~~~fl~~~~-~~~iir~h-~~~~~G~~~~~ 425 (485)
|+||. .+|.++.||.+ +.||.++ ..+||+.+| +++++|+| |.+++||...+
T Consensus 156 ~~d~~--~~w~~~~~G~~r~~~~~~~~tr~rf~~~~g~l~~~~r~~~~~~~~g~~~w~ 211 (280)
T 2dfj_A 156 YGDMP--NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWF 211 (280)
T ss_dssp TCSCC--CSCCTTCCHHHHHHHHHHHHHTCCEEETTBEEESSCCSCGGGCCSSCEEGG
T ss_pred cCCCC--CCcCCCCCCceeEEEeccHHHHHHHhhcCCcEeEEeccChhhcCccccchh
Confidence 99985 57889999999 6799888 477888888 88888888 77778887655
No 11
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=99.88 E-value=7.4e-23 Score=194.84 Aligned_cols=220 Identities=17% Similarity=0.210 Sum_probs=140.5
Q ss_pred HhhcCCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEE
Q 011451 206 MLRALPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIY 285 (485)
Q Consensus 206 ~l~~ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~ 285 (485)
.+..+|++..+.. +++++||+||++.+|.++++..+.....+.+||+|||||||+.+.|++.+|..+ .|+
T Consensus 7 ~~~~~~~l~~~~~----~i~visDiHg~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~~~~l~~l~~~------~~~ 76 (262)
T 2qjc_A 7 GYANVVTLPNVTG----RVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRL------GAY 76 (262)
T ss_dssp -CCCEEECTTCCS----CEEEECCCTTCHHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCHHHHHHHHHHH------TCE
T ss_pred ccCChhhhcCCCC----eEEEEeCCCCCHHHHHHHHHHHhccCCCCEEEEecCCCCCCCCHHHHHHHHHHC------CCE
Confidence 3455565655433 599999999999999999998877654467999999999999999999998764 489
Q ss_pred EeccCCCccccccccCchhH-HHhhhc---------HHHHHHHHHHhccccccceeC-CcEEEEeCccccCCCC----Ch
Q 011451 286 LSRGNHESKSMNKIYGFEGE-VRSKLS---------ETFVELFAEVFCCLPLAHVLN-QKVFVVHGGLFSVDGV----KL 350 (485)
Q Consensus 286 ~lrGNHE~~~~~~~~~f~~e-~~~~~~---------~~~~~~~~~~f~~lPl~~~i~-~~~~~vHgGi~~~~~~----~~ 350 (485)
+++||||.+.++..+++..+ |..+++ ..+.....+||+.||+++.++ .+++|||||+ +|... +.
T Consensus 77 ~v~GNHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~i~~~~i~~vHgg~-~p~~~~~~~~~ 155 (262)
T 2qjc_A 77 SVLGNHDAKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGL-HPQRPVDRQYE 155 (262)
T ss_dssp ECCCHHHHHHHHHHHCC-------------CHHHHHHHCCHHHHHHHHTCCSEEEEGGGTEEEESSCC-CTTSCGGGCCH
T ss_pred EEeCcChHHHHhhhcCCCccccccccchHHHHHHHHhhhhHHHHHHHHcCCcEEEECCCcEEEEECCC-CCCCCcccCCH
Confidence 99999999998877776543 333333 223355678999999999886 5999999999 55432 22
Q ss_pred hhhhhcc---CCCCCCCCCcccccccCCCCCCC--CCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEEec
Q 011451 351 SDIKTID---RFCEPPEEGLMCELLWSDPQPLP--GRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEIEH 425 (485)
Q Consensus 351 ~~i~~~~---r~~~~~~~~~~~~llw~dp~~~~--~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~~~ 425 (485)
+++..+. ++.+.+..+. .++|+||.... .|..+. .+.+.||-||+.+. ++....
T Consensus 156 ~~l~~ir~~~~~~~~~~~G~--~~~~~d~~~~~~~~w~~~~------------------~g~~~vvfGHt~~~-~~~~~~ 214 (262)
T 2qjc_A 156 DEVTTMRNLIEKEQEATGGV--TLTATEETNDGGKPWASMW------------------RGPETVVFGHDARR-GLQEQY 214 (262)
T ss_dssp HHHHHCCEEEEC-------C--CEEEESCSTTCCEEGGGGC------------------CCSSEEEECCCGGG-CCBCTT
T ss_pred HHHhhhhhcccccccCCCCc--cccccCCCCcCCCChhhcc------------------CCCCEEEECCCccc-cccccC
Confidence 3333332 2111111222 47899984321 222222 25688999999874 544322
Q ss_pred CCeEEEEecCCCCCCCCCCeEEEEEEecCCCceeEEEEec
Q 011451 426 DGKLITVFSAPNYCDQMGNKGAFIRFEAPTLKPNIVTFAA 465 (485)
Q Consensus 426 ~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~~~~~~~~~~~ 465 (485)
++.++.|-+.+-| ++.=+++.| +. . ++.+..+
T Consensus 215 ~~~~i~IDtG~~~----gG~Lt~l~l-~~-~--~~~~~~~ 246 (262)
T 2qjc_A 215 KPLAIGLDSRCVY----GGRLSAAVF-PG-G--CIISVPG 246 (262)
T ss_dssp TTTEEECCCBGGG----TSEEEEEEE-TT-T--EEEEEEC
T ss_pred CCCEEEeeCcccc----CCeeEEEEE-cC-C--cEEEEec
Confidence 2267666655533 345567778 33 2 4555544
No 12
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.83 E-value=1.5e-19 Score=152.47 Aligned_cols=120 Identities=30% Similarity=0.555 Sum_probs=115.6
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011451 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
..-+|+.++++..+|+.++++|+|++|++.|+++++++|.++.+|.++|.++..+|++++|+..++++++++|+++.+|+
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011451 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
.+|.++..+|++++|+..|+++++++|++++++..++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888764
No 13
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=99.81 E-value=6.9e-20 Score=170.19 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=116.1
Q ss_pred ecCCCCCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccc
Q 011451 216 IDIPDGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 216 i~~~~~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
++.+...++.++||+||++.+|.++++..+.++..+.+||+||+||||+++.|++.+|.. ..|++++||||.+.
T Consensus 7 ~~~~~~~~i~visDiHg~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~~~~~~~l~~------~~~~~v~GNhd~~~ 80 (221)
T 1g5b_A 7 IDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITF------PWFRAVRGNHEQMM 80 (221)
T ss_dssp EEGGGCSCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGGS------TTEEECCCHHHHHH
T ss_pred cCCCCCceEEEEEcCCCCHHHHHHHHHHccCCCCCCEEEEeCCccCCCCChHHHHHHHhc------CCEEEEccCcHHHH
Confidence 333444579999999999999999999988765567799999999999999999887642 47999999999887
Q ss_pred cccccCchhH--HHh-------h---hcHHHHHHHHHHhcccccccee---CCcEEEEeCccccCCCCChhhhhhccCCC
Q 011451 296 MNKIYGFEGE--VRS-------K---LSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFC 360 (485)
Q Consensus 296 ~~~~~~f~~e--~~~-------~---~~~~~~~~~~~~f~~lPl~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~ 360 (485)
++..+++... +.. . ....+...+.+||+.||+++.+ +.+++|||||+|+ .... ..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~~~~~~~~i~~vHgg~~~-~~~~------~~~~~ 153 (221)
T 1g5b_A 81 IDGLSERGNVNHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPF-DEYE------FGKPV 153 (221)
T ss_dssp HHHHSTTCCCHHHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCCS-SBCC------TTCCC
T ss_pred HhhhccCCcHHHHHHcCCCchhhcCHHHHHHHHHHHHHHHhCCcEEEEEecCCeEEEEecCCCh-hhcc------cCCCc
Confidence 7644332111 100 0 1235677888999999999877 6799999999843 2111 11211
Q ss_pred CCCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHH-----HCCCcEEEeeccccc
Q 011451 361 EPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQ-----DNSLDLVVRSHEVKD 418 (485)
Q Consensus 361 ~~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~-----~~~~~~iir~h~~~~ 418 (485)
...+++|++|. +.+..+ ..+.+.+|-||+.+.
T Consensus 154 ------~~~~~lw~~~~--------------------~~~~~~~~~~~~~~~~~vv~GHth~~ 190 (221)
T 1g5b_A 154 ------DHQQVIWNRER--------------------ISNSQNGIVKEIKGADTFIFGHTPAV 190 (221)
T ss_dssp ------CHHHHHHCCHH--------------------HHHHHTTCCCCCBTSSEEEECSSCCS
T ss_pred ------cccccccCchh--------------------hhhhccccCCcccCCCEEEECCCCCc
Confidence 13578897742 122222 356789999999865
No 14
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.76 E-value=5.1e-18 Score=183.55 Aligned_cols=146 Identities=23% Similarity=0.327 Sum_probs=136.5
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
.+.|++++++.++|.++..+|++++|++.|++|++++|+++.++.++|.+|.++|++++|+++|++|++++|+++.+|++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcc
Q 011451 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
+|.++..+|++++|++.|++|++++|+++.++.++|.++...++ +++|+..++ ++++++|++..+.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--~~eAi~~~~------------~Al~l~P~~~~a~ 148 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN--IPEAIASYR------------TALKLKPDFPDAY 148 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCChHHH
Confidence 99999999999999999999999999999999999999977766 789998888 8888888775543
No 15
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.74 E-value=1.9e-17 Score=143.76 Aligned_cols=123 Identities=13% Similarity=0.080 Sum_probs=114.6
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
...|+.+..++.+|.+|+..|++++|++.|+++++++|+++.+|.++|.++...|++++|+.+|+++++++|+++.+++.
T Consensus 25 ~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 104 (150)
T 4ga2_A 25 PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLK 104 (150)
T ss_dssp CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011451 88 RGAAYLAMGKFKEALKD-FQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~-~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+|.++..+|++++|... +++|++++|+++.++..++.++...|
T Consensus 105 la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 105 IAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 99999999999887776 59999999999999988888774433
No 16
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.74 E-value=5.2e-17 Score=141.24 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=106.6
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011451 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
...+|+.+++++.+|..++..|++++|++.|+++++++|+++.+|.++|.++..+|++++|+.+|+++++++|+++.+|+
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 011451 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDP 116 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 116 (485)
++|.+|..+|++++|+..|++++++.|+.+
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999865
No 17
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.73 E-value=2.2e-17 Score=147.58 Aligned_cols=141 Identities=17% Similarity=0.241 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
+.+..|+.+|.++..+|++++|++.|+++++++|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCc
Q 011451 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (485)
+...+++++|...++++++..|+++.++..++.++...++ +++|+..++ ++++++|....+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~~l~~~p~~~~~ 143 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE--HDKAIEAYE------------KTISIKPGFIRA 143 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC--chhHHHHHH------------HHHHhcchhhhH
Confidence 9999999999999999999999999999999999977666 789988888 788888766443
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=8.2e-18 Score=155.44 Aligned_cols=130 Identities=19% Similarity=0.272 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|..+.+++.+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 91 AYLAM-----------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 91 ~~~~~-----------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++..+ |++++|+..|+++++++|+++.++..++.++...++ +++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 142 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--RDKAEASLK 142 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 99999 999999999999999999999999999999976666 788888888
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=1.8e-17 Score=153.09 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=134.7
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-----------EEYGSAIQDASKAIE 76 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~eAl~~~~~al~ 76 (485)
...|+.+.+++.+|.++...|++++|++.|+++++++|+++.++.++|.++... |++++|+..++++++
T Consensus 33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 112 (217)
T 2pl2_A 33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER 112 (217)
T ss_dssp TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccc
Q 011451 77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQS 156 (485)
Q Consensus 77 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~ 156 (485)
++|+++.++..+|.++..+|++++|+..|+++++++ +++.++..++.++...++ +++|+..++ ++
T Consensus 113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~a 177 (217)
T 2pl2_A 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR--LDEALAQYA------------KA 177 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC--HHHHHHHHH------------HH
T ss_pred hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC--HHHHHHHHH------------HH
Confidence 999999999999999999999999999999999999 999999999999977776 789988888 78
Q ss_pred cccCCCCCCc
Q 011451 157 IEVEPQYSGA 166 (485)
Q Consensus 157 l~~~~~~~~~ 166 (485)
++++|....+
T Consensus 178 l~~~P~~~~~ 187 (217)
T 2pl2_A 178 LEQAPKDLDL 187 (217)
T ss_dssp HHHSTTCHHH
T ss_pred HHhCCCChHH
Confidence 8888766543
No 20
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.9e-17 Score=134.22 Aligned_cols=118 Identities=27% Similarity=0.433 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|..+..+..+|..++..|++++|++.|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Q 011451 91 AYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKA 128 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~~ 128 (485)
++..+|++++|+..|+++++++ |+++.++..+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999888877643
No 21
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.72 E-value=3.7e-17 Score=149.99 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYAN----------------RAFAHTKLEEYGSAIQDASKAIE 76 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~eAl~~~~~al~ 76 (485)
.++.++..|..++..|++++|++.|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 77 IDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 77 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++...+......+...+.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987776655555554444
No 22
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=4e-16 Score=135.11 Aligned_cols=123 Identities=17% Similarity=0.260 Sum_probs=114.2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
...|+.+.+++.+|..++..|++++|++.|+++++.+|+++.+|.++|.++...|++++|+.+|++++.++|+++.+++.
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011451 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+|.++..+|++++|+..|++++++.|+++........+...+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999887655555554443
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.71 E-value=5.6e-16 Score=132.87 Aligned_cols=125 Identities=19% Similarity=0.270 Sum_probs=117.0
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011451 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
....|+.+..++.+|..++..|++++|++.|+++++.+|+++.+|..+|.++...|++++|+.+|++++.++|+++.+++
T Consensus 11 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 11 RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011451 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
.+|.++..+|++++|+..|++++++.|+++........+...+..
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877777766655554
No 24
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.70 E-value=5.5e-16 Score=136.17 Aligned_cols=120 Identities=31% Similarity=0.432 Sum_probs=113.5
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011451 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
....+..+..++.+|..++..|++++|++.|+++++++|+++.++.++|.++..+|++++|+.+++++++++|++..+|+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 4 SMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011451 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
.+|.++..+|++++|+.+|+++++++|+++.++...+...
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999776666554
No 25
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1.2e-16 Score=160.42 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=137.8
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCChHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~-~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
...|+.+.++..+|.++...|++++|++.|+++|+++|++..+|.++|.++..+|+ +++|+.+++++++++|++..+|+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 55789999999999999999999999999999999999999999999999999997 99999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCc
Q 011451 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (485)
++|.++..+|++++|+..|+++++++|++..+|..++.++..+++ +++|+..++ ++++++|.+..+
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--~~eAl~~~~------------~al~l~P~~~~a 236 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--WDNELQYVD------------QLLKEDVRNNSV 236 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CTTHHHHHH------------HHHHHCTTCHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--hHHHHHHHH------------HHHHhCCCCHHH
Confidence 999999999999999999999999999999999999999988776 567777776 899999987665
Q ss_pred ccc
Q 011451 167 RIE 169 (485)
Q Consensus 167 ~l~ 169 (485)
+..
T Consensus 237 ~~~ 239 (382)
T 2h6f_A 237 WNQ 239 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 26
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.69 E-value=4.3e-16 Score=131.21 Aligned_cols=113 Identities=27% Similarity=0.380 Sum_probs=103.3
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-------
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP------- 82 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~------- 82 (485)
.++.+.++.++|+.++++|+|++|++.|++|++++|+++.++.++|.+|..+|++++|+..++++++++|++.
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011451 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (485)
Q Consensus 83 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (485)
.++.++|.++..+|++++|+++|+++++..|+ ++....+.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 123 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence 58899999999999999999999999999874 55544443
No 27
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.69 E-value=1.2e-16 Score=138.16 Aligned_cols=121 Identities=21% Similarity=0.229 Sum_probs=111.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAV-----YYANRAFAHTKLEEYGSAIQDASKAIEI- 77 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~eAl~~~~~al~~- 77 (485)
...+..+..+|+.++..|+|++|++.|++||+++|+ +.. +|.++|.++..+|++++|+.++++|+++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 567889999999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ------CCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011451 78 ------DPRYPKGY----YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 78 ------~p~~~~~~----~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
+|++..+| +++|.++..+|++++|+.+|+++++++|++......+..+......
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999998877777776655443
No 28
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=1.2e-17 Score=145.08 Aligned_cols=132 Identities=16% Similarity=0.090 Sum_probs=115.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 011451 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (485)
Q Consensus 19 ~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 98 (485)
.+|..+..+|++++|++.+++++..+|+++.+++.+|.+|+..|++++|+.+++++++++|+++.+|+.+|.+|..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcC-CccccccccccccccccccCCCCC
Q 011451 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV-PESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~-~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
++|+..|+++++++|+++.++..++.++...++ +++|... .+ ++++++|...
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~aa~~~~~------------~al~l~P~~~ 134 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV--TDGRAKYWVE------------RAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS--SSSHHHHHHH------------HHHHHSTTCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHH------------HHHHhCcCCH
Confidence 999999999999999999999999999977665 3344332 34 6788877654
No 29
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.69 E-value=5e-16 Score=143.78 Aligned_cols=143 Identities=22% Similarity=0.252 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNS-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p-~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
+++.++.+|..++..|++++|++.|+++++++| .+..+++++|.++...|++++|+.+++++++.+|++..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 458999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCC--
Q 011451 92 YLAMGKFKEALKDFQQVKKLSPNDP-------DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ-- 162 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~-- 162 (485)
+..+|++++|+..|+++++++|+++ .++..++.++...++ +++|+..++ ++++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~------------~al~~~p~~~ 151 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYK------------HATDVTSKKW 151 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHTTSSCHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHH------------HHHhcCCCcc
Confidence 9999999999999999999999999 456666666644444 677777777 88888887
Q ss_pred CCCcccc
Q 011451 163 YSGARIE 169 (485)
Q Consensus 163 ~~~~~l~ 169 (485)
...+...
T Consensus 152 ~~~~~~~ 158 (228)
T 4i17_A 152 KTDALYS 158 (228)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5444333
No 30
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.69 E-value=5.2e-16 Score=136.03 Aligned_cols=124 Identities=24% Similarity=0.349 Sum_probs=113.9
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL------------------NSQNAVYYANRAFAHTKLEEYGSAIQ 69 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~eAl~ 69 (485)
.+..+.+..+..+|+.++..|+|++|+..|++++++ +|.+..++.++|.++..+|++++|+.
T Consensus 5 ~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 445678899999999999999999999999999999 77788999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhh
Q 011451 70 DASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP-DAAQKVKECEKAVKK 131 (485)
Q Consensus 70 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~ 131 (485)
++++++.++|+++.+|+.+|.+|..+|++++|+..|+++++++|+++ .+...+..+...+..
T Consensus 85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 677788887766554
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=5.9e-16 Score=138.20 Aligned_cols=140 Identities=21% Similarity=0.283 Sum_probs=132.7
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
+|+.+.++..+|.++...|++++|++.+.+++...|+++.++..+|.++...+++++|+..+.+++..+|++..++..+|
T Consensus 35 ~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg 114 (184)
T 3vtx_A 35 DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLG 114 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
.++..+|++++|++.|+++++++|+++.++..+|.++...++ +++|+..++ ++++++|..
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 174 (184)
T 3vtx_A 115 LVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL--RDEAVKYFK------------KALEKEEKK 174 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHTTHHH
T ss_pred HHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhCCccC
Confidence 999999999999999999999999999999999999977666 789998888 777777754
No 32
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.67 E-value=2.8e-15 Score=130.68 Aligned_cols=135 Identities=53% Similarity=0.854 Sum_probs=126.4
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
.+..+.+..++.+|..++..|++++|+..|+++++.+|.++.++.++|.++...|++++|+..+++++..+|+++.+++.
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+|.++..+|++++|+..|+++++..|+++.++..++.+......+++++|+..++
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999988887766666777899988877
No 33
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.66 E-value=2.5e-16 Score=170.40 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=123.4
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|+.+.+++++|.++.++|++++|++.|++|++++|+++.++.++|.++..+|++++|+++|++|++++|+++.+|.++|
T Consensus 39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg 118 (723)
T 4gyw_A 39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+|..+|++++|++.|++|++++|+++.++.+++.++..+++ +++|.+.++
T Consensus 119 ~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~--~~~A~~~~~ 169 (723)
T 4gyw_A 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD--WTDYDERMK 169 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--CTTHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc--HHHHHHHHH
Confidence 999999999999999999999999999999999999977776 455555544
No 34
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.65 E-value=8.9e-15 Score=121.47 Aligned_cols=126 Identities=36% Similarity=0.578 Sum_probs=118.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 011451 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
.....+..+..++.+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 4 GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011451 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
+.+|.++..+|++++|+..|+++++..|+++.++..++.++..+++
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999877664
No 35
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.65 E-value=3.4e-15 Score=124.87 Aligned_cols=125 Identities=32% Similarity=0.485 Sum_probs=118.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 011451 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
.....+..+.+++.+|..++..|++++|++.|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 87 (133)
T 2lni_A 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGY 87 (133)
T ss_dssp TCCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHH
Confidence 44567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011451 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+.+|.++..+|++++|+..|+++++.+|++..++..++.++...+
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999886543
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=6.5e-16 Score=155.17 Aligned_cols=151 Identities=10% Similarity=0.050 Sum_probs=130.8
Q ss_pred CchhHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKK-YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~-~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
.+|+.+.+|+.+|.++...|+ +++|++.|+++++++|+++.+|.++|.++..+|++++|+.+|++|++++|++..+|++
T Consensus 126 l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~ 205 (382)
T 2h6f_A 126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHH
Confidence 367889999999999999997 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcc
Q 011451 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
+|.++..+|++++|+.+|+++++++|++..+|..++.++..++.. .++|+. ..+...+.++++++|.+..++
T Consensus 206 lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~-~~eA~~-------~~el~~~~~Al~l~P~~~~a~ 277 (382)
T 2h6f_A 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY-NDRAVL-------EREVQYTLEMIKLVPHNESAW 277 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS-CSHHHH-------HHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-chHHHH-------HHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999999999999999998763321 133320 001223337888888776543
No 37
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.63 E-value=9.7e-15 Score=144.20 Aligned_cols=123 Identities=30% Similarity=0.475 Sum_probs=118.9
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASKA 74 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~eAl~~~~~a 74 (485)
.|+.+.+++.+|..++..|++++|++.|++|++++|.+ ..++.++|.++..+|++++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57789999999999999999999999999999999998 699999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011451 75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 75 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
++++|+++.+++++|.+|..+|++++|+.+|+++++++|+++.++..++.++..+++.
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887764
No 38
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.63 E-value=2e-16 Score=137.56 Aligned_cols=120 Identities=13% Similarity=-0.033 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011451 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (485)
Q Consensus 29 ~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 108 (485)
++-.+-..++++++++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|+++
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 33344566788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCC
Q 011451 109 KKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (485)
Q Consensus 109 l~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (485)
++++|+++.+++.+|.++..+++ +++|+..++ +++++.|+
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~--~~eA~~~~~------------~al~l~~~ 136 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKA--PLKAKECFE------------LVIQHSND 136 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCCC
T ss_pred HhhCCCCcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCC
Confidence 99999999999999999977776 789998888 77777654
No 39
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.62 E-value=9e-15 Score=123.55 Aligned_cols=122 Identities=30% Similarity=0.430 Sum_probs=112.4
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..+..+..++.+|..++..|++++|+..|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHh
Q 011451 89 GAAYLAMGKFKEALKDFQQVKKLSPN-----DPDAAQKVKECEKAVK 130 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~ 130 (485)
|.++..+|++++|+..|+++++++|+ +..+...+..+.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 7777777777664443
No 40
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.62 E-value=2.5e-14 Score=116.54 Aligned_cols=115 Identities=31% Similarity=0.544 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
+.+..++.+|..+...|++++|++.|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011451 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
+..+|++++|...|+++++.+|+++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999998888764
No 41
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.62 E-value=3.9e-15 Score=137.76 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-------HH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP-------KG 84 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~-------~~ 84 (485)
.+...++.+|.++...|++++|++.|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++ .+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 119 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIY 119 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 45578888999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhhhHHHhhcC
Q 011451 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQKVKECEKAVKKLKFEEAIAV 140 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~A~~~ 140 (485)
|..+|.++..+|++++|+..|+++++++|+ ++.++..++.++...+....+++..+
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~ 177 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPL 177 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 99999999999987777544444443
No 42
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=2.1e-15 Score=156.06 Aligned_cols=133 Identities=12% Similarity=0.022 Sum_probs=107.4
Q ss_pred CchhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~-~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
..+..+..++.+|..+...|++ ++|++.|+++++++|+++.+|..+|.+|...|++++|+++|+++++++|+ ..++..
T Consensus 97 ~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 175 (474)
T 4abn_A 97 SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175 (474)
T ss_dssp TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHH
T ss_pred cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHH
Confidence 3456778888888888888888 88888888888888888888888888888888888888888888888887 688888
Q ss_pred HHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hh--hhHHHhhcCCc
Q 011451 88 RGAAYLAM---------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV----KK--LKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~~~~~---------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~--~~~~~A~~~~~ 142 (485)
+|.++..+ |++++|+..|+++++++|+++.++..++.++... ++ +++++|+..++
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~ 245 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 88888888 8888888888888888888888888888888665 01 33677776666
No 43
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.61 E-value=2e-15 Score=163.23 Aligned_cols=147 Identities=15% Similarity=0.026 Sum_probs=136.6
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
...|+.+.+++.+|..+...|++++|++.|+++++.+|+++.+++++|.++..+|++++|++.|++|++++|+++.++++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 45578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcc
Q 011451 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
+|.++..+|++++ +..|+++++++|+++.++..++.++..+++ +++|+..++ ++++++|.+..++
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~A~~~~~------------~al~l~P~~~~a~ 571 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD--RVGAVRTLD------------EVPPTSRHFTTAR 571 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------TSCTTSTTHHHHH
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC--HHHHHHHHH------------hhcccCcccHHHH
Confidence 9999999999999 999999999999999999999999977666 789998888 8888888876664
Q ss_pred cc
Q 011451 168 IE 169 (485)
Q Consensus 168 l~ 169 (485)
+.
T Consensus 572 ~~ 573 (681)
T 2pzi_A 572 LT 573 (681)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 44
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.61 E-value=5.9e-15 Score=123.08 Aligned_cols=104 Identities=12% Similarity=0.056 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~ 93 (485)
...++.+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..++++++++|+++.+++.+|.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 011451 94 AMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
.+|++++|+..|+++++++|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999998754
No 45
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.60 E-value=3.1e-14 Score=128.94 Aligned_cols=122 Identities=28% Similarity=0.403 Sum_probs=116.9
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----------------VYYANRAFAHTKLEEYGSAIQDASK 73 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~eAl~~~~~ 73 (485)
.++.+..+..+|..++..|++++|++.|++++++.|.++ .++.++|.++..+|++++|+.++++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 466788999999999999999999999999999999887 8999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011451 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 74 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
++.++|++..+++.+|.++..+|++++|+..|+++++++|+++.++..++.++..+++
T Consensus 114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999977765
No 46
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.60 E-value=6.5e-15 Score=138.83 Aligned_cols=187 Identities=15% Similarity=0.137 Sum_probs=125.6
Q ss_pred CceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccC
Q 011451 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYG 301 (485)
Q Consensus 222 ~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~ 301 (485)
.++.++||+||++..+..+++... ..+.++++||++|+|+++.|++.+|..++ .|+.++||||.........
T Consensus 4 mri~~isDiHg~~~~l~~~l~~~~---~~d~ii~~GDl~~~g~~~~~~~~~l~~~~-----~~~~v~GNhD~~~~~~~~~ 75 (246)
T 3rqz_A 4 MRILIISDVHANLVALEAVLSDAG---RVDDIWSLGDIVGYGPRPRECVELVRVLA-----PNISVIGNHDWACIGRLSL 75 (246)
T ss_dssp CCEEEECCCTTCHHHHHHHHHHHC---SCSEEEECSCCSSSSSCHHHHHHHHHHHC-----SSEECCCHHHHHHTCCCCC
T ss_pred cEEEEEeecCCCHHHHHHHHHhcc---CCCEEEECCCcCCCCCCHHHHHHHHHhcC-----CCEEEeCchHHHHhccCCc
Confidence 468999999999999999999876 44679999999999999999999998875 2788999999887653322
Q ss_pred --ch---hHHHhhhcHHHHHHHHHHhccccccceeCCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCC
Q 011451 302 --FE---GEVRSKLSETFVELFAEVFCCLPLAHVLNQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDP 376 (485)
Q Consensus 302 --f~---~e~~~~~~~~~~~~~~~~f~~lPl~~~i~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp 376 (485)
+. ..........+.....+|++.+|.....+ +++++||++.++. |
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~-~i~~~Hg~p~~~~--------------------------~--- 125 (246)
T 3rqz_A 76 DEFNPVARFASYWTTMQLQAEHLQYLESLPNRMIDG-DWTVVHGSPRHPI--------------------------W--- 125 (246)
T ss_dssp C--CGGGGCHHHHHHHHCCHHHHHHHHHCCSEEEET-TEEEESSCSSSTT--------------------------T---
T ss_pred cccCHHHHHHHHHHHHHcCHHHHHHHHhCCcEEEEC-CEEEEECCcCCcc--------------------------c---
Confidence 11 11111112334455668899999987765 8999999872210 0
Q ss_pred CCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcE------------------Ee-c-CCeEEEEecCC
Q 011451 377 QPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYE------------------IE-H-DGKLITVFSAP 436 (485)
Q Consensus 377 ~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~------------------~~-~-~~~~~tvfsa~ 436 (485)
++.+....+.+.++..+.+++|-||+-.+..+. +. . +..++..=|.-
T Consensus 126 -------------~~~~~~~~~~~~l~~~~~~l~i~GHtH~p~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ivNpGSVG 192 (246)
T 3rqz_A 126 -------------EYIYNARIAALNFPAFDTPLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDVSSGRYIINPGAVG 192 (246)
T ss_dssp -------------CCCCSHHHHHHHGGGCCSSEEECCSSSSEEEEEHHHHHTTCCCBCCCTTCEEECSSSCEEEEECCSS
T ss_pred -------------cccCChHHHHHHHhccCCCEEEECCcCcccEEEecccccccccccccccceeecCCCeEEEECCccC
Confidence 011233567778889999999999997643332 11 1 23344444432
Q ss_pred CCCCCCCCeEEEEEEecCCCceeE
Q 011451 437 NYCDQMGNKGAFIRFEAPTLKPNI 460 (485)
Q Consensus 437 ~y~~~~~n~~a~~~~~~~~~~~~~ 460 (485)
.--+ ..+.|++++++.++.+++|
T Consensus 193 ~Prd-g~p~A~Y~i~d~~~~~v~~ 215 (246)
T 3rqz_A 193 QPRD-GDPRASYAIFEPDAQRVTF 215 (246)
T ss_dssp CCCS-SCCSEEEEEEEGGGTEEEE
T ss_pred CCCC-cCCcceEEEEECCCCEEEE
Confidence 1111 3456899999544444443
No 47
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.60 E-value=2.4e-15 Score=126.43 Aligned_cols=113 Identities=20% Similarity=0.276 Sum_probs=103.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011451 39 QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 39 ~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (485)
++..++|+.+.++.++|.++++.|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCC
Q 011451 119 AQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (485)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (485)
+..+|.++..+++ +++|+..++ ++++++|....
T Consensus 84 ~~~lg~~~~~~~~--~~~A~~~~~------------~al~l~P~~~~ 116 (126)
T 4gco_A 84 YIRKAACLVAMRE--WSKAQRAYE------------DALQVDPSNEE 116 (126)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCHH
T ss_pred HHHHHHHHHHCCC--HHHHHHHHH------------HHHHHCcCCHH
Confidence 9999999977666 789988888 88888887644
No 48
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.8e-14 Score=120.22 Aligned_cols=119 Identities=34% Similarity=0.502 Sum_probs=112.6
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~ 84 (485)
...+..+..++.+|..++..|++++|++.|+++++.+|++ ..++.++|.++...|++++|+..+++++..+|+++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3456788999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011451 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
++.+|.++..+|++++|+..|+++++++|+++.++..++.+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999988777664
No 49
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.58 E-value=1.2e-13 Score=113.41 Aligned_cols=116 Identities=32% Similarity=0.544 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
.+..++.+|..+...|++++|++.|+++++.+|.+..++..+|.++...|++++|+..+++++..+|++..++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011451 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (485)
...|++++|+..|+++++..|+++.++..++.++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888754
No 50
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.58 E-value=3e-14 Score=146.73 Aligned_cols=124 Identities=30% Similarity=0.470 Sum_probs=115.1
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------------AVYYANRAFAHTKLEEYGSAIQDASK 73 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~eAl~~~~~ 73 (485)
..|+.+..++.+|+.++.+|+|++|+..|++|++++|.+ ..+|.++|.||.++|++++|+.+|++
T Consensus 263 ~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 356788999999999999999999999999999999998 79999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011451 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 74 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
|++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++.
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888764
No 51
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.57 E-value=6.5e-14 Score=132.35 Aligned_cols=198 Identities=14% Similarity=0.092 Sum_probs=123.8
Q ss_pred ceeEecccCCCHHHHHHHHHHcC---CCC-CCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcccccc
Q 011451 223 HFTVCGDVHGQFYDLLNIFELNG---LPS-EENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNK 298 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~---~~~-~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~ 298 (485)
++.++||+||++..+.++++... ... ..+.+|++||++|+|+.+.+++.+|..++... .|++++||||.+....
T Consensus 3 ~i~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~~--~~~~v~GNhD~~~~~~ 80 (252)
T 1nnw_A 3 YVAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKE--NVKIIRGKYDQIIAMS 80 (252)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHHS--CEEEECCHHHHHHHHS
T ss_pred EEEEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhhc--CeeEEecchHHHhhcc
Confidence 48899999999999998887654 221 34679999999999999999999998876433 4899999999876542
Q ss_pred ccCch-----------h---HHHhhhcHHHHHHHHHHhcccccccee--CC-cEEEEeCccccCCCCChhhhhhccCCCC
Q 011451 299 IYGFE-----------G---EVRSKLSETFVELFAEVFCCLPLAHVL--NQ-KVFVVHGGLFSVDGVKLSDIKTIDRFCE 361 (485)
Q Consensus 299 ~~~f~-----------~---e~~~~~~~~~~~~~~~~f~~lPl~~~i--~~-~~~~vHgGi~~~~~~~~~~i~~~~r~~~ 361 (485)
...+. . .........+-....+|++.+|....+ ++ +++++||++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~~~~~i~~~H~~p~~~~--------------- 145 (252)
T 1nnw_A 81 DPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSPINPF--------------- 145 (252)
T ss_dssp CTTCSSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCSSCTT---------------
T ss_pred ccccCCcccccchhhhHHHHHHHHHHHHHCCHHHHHHHHhCCceEEEeeCCcEEEEEcCCCCCCc---------------
Confidence 21110 0 000001223444556889999987654 34 8999998861110
Q ss_pred CCCCCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHC-CCcEEEeeccccccCcEEecCCeEEEEecCCCCCC
Q 011451 362 PPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDN-SLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCD 440 (485)
Q Consensus 362 ~~~~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~-~~~~iir~h~~~~~G~~~~~~~~~~tvfsa~~y~~ 440 (485)
.+.+|.+ -+.+.+.++++.. +++.+|-||+....... .++.++--=.|..+.-
T Consensus 146 -------~~~~~~~-----------------~~~~~l~~~~~~~~~~~~vi~GHtH~~~~~~--~~~~~~in~Gs~~~~~ 199 (252)
T 1nnw_A 146 -------DGEVLAE-----------------QPTSYYEAIMRPVKDYEMLIVASPMYPVDAM--TRYGRVVCPGSVGFPP 199 (252)
T ss_dssp -------TCCCCSS-----------------CCHHHHHHHHGGGTTSSEEEESTTCSEEEEE--ETTEEEEEECCSSSCS
T ss_pred -------ccccCCC-----------------CCHHHHHHHHhcCCCCCEEEECCccccceEe--cCCeEEEECCCccCCC
Confidence 0111110 1235677788887 99999999998654433 3453321111222111
Q ss_pred CCCCeEEEEEEecCCCceeEEEE
Q 011451 441 QMGNKGAFIRFEAPTLKPNIVTF 463 (485)
Q Consensus 441 ~~~n~~a~~~~~~~~~~~~~~~~ 463 (485)
.....+++++++.++.++++...
T Consensus 200 ~~~~~~~y~il~~~~~~v~~~~v 222 (252)
T 1nnw_A 200 GKEHKATFALVDVDTLKPKFIEV 222 (252)
T ss_dssp SSSCCEEEEEEETTTCCEEEEEE
T ss_pred CCCCcceEEEEECCCCeEEEEEe
Confidence 11235788888655566655544
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.57 E-value=3.1e-15 Score=154.90 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=102.6
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 011451 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY-GSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDF 105 (485)
Q Consensus 27 ~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~-~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 105 (485)
.+++++|++.++++....|.++.++..+|.++...|++ ++|+++|+++++++|+++.+|+.+|.+|..+|++++|+..|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45688999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHH---------hhhhHHHhhcCCc
Q 011451 106 QQVKKLSPNDPDAAQKVKECEKAV---------KKLKFEEAIAVPE 142 (485)
Q Consensus 106 ~~al~~~p~~~~~~~~l~~~~~~~---------~~~~~~~A~~~~~ 142 (485)
+++++++|+ ..++..++.++... ++ +++|+..++
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~--~~~A~~~~~ 203 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH--VMDSVRQAK 203 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH--HHHHHHHHH
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh--HHHHHHHHH
Confidence 999999999 79999999998666 44 566665544
No 53
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.57 E-value=5.5e-14 Score=116.95 Aligned_cols=126 Identities=29% Similarity=0.482 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
.+++.+|..+...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 95 MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 95 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.|++++|+..++++++..|+++.++..++.++...++ +++|...++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 127 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD--YDEAIEYYQ 127 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc--HHHHHHHHH
Confidence 9999999999999999999999999999999865554 678877766
No 54
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.57 E-value=8.5e-14 Score=115.58 Aligned_cols=120 Identities=28% Similarity=0.443 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PK 83 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-------~~ 83 (485)
++.+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.++++++...|++ ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999998877 89
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011451 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
+++.+|.++..+|++++|+..|+++++..| ++.....++.+...+++
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 68888888888766654
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=5.5e-14 Score=124.00 Aligned_cols=131 Identities=17% Similarity=0.221 Sum_probs=108.3
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|..+..+..+|..+...|++++|++.++++++.+|.+..++..+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 117 (186)
T 3as5_A 38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117 (186)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence 44567788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++...|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 168 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR--HEEALPHFK 168 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 888888888888888888888888888888888888865554 677777666
No 56
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.55 E-value=1.1e-13 Score=130.75 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=121.6
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---h
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---P 82 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~ 82 (485)
..+..++.++.+|..++..|++++|++.|+++++.+|++ +.+++.+|.++..+|++++|+..|++++...|++ +
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 356778999999999999999999999999999999999 9999999999999999999999999999998865 6
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHhhhhHHHh
Q 011451 83 KGYYRRGAAYLA--------MGKFKEALKDFQQVKKLSPNDPDAA-----------------QKVKECEKAVKKLKFEEA 137 (485)
Q Consensus 83 ~~~~~lg~~~~~--------~g~~~eA~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~~A 137 (485)
.+++.+|.++.. +|++++|+..|+++++..|+++.+. ..++.++...++ +++|
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A 167 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL--YEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHH
Confidence 789999999999 9999999999999999999997766 455555544333 5666
Q ss_pred hcCCccccccccccccccccccCCCC
Q 011451 138 IAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
+..++ ++++..|..
T Consensus 168 ~~~~~------------~~l~~~p~~ 181 (261)
T 3qky_A 168 AVTYE------------AVFDAYPDT 181 (261)
T ss_dssp HHHHH------------HHHHHCTTS
T ss_pred HHHHH------------HHHHHCCCC
Confidence 66555 777777764
No 57
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=2.7e-13 Score=119.51 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=123.7
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
....+..+..+|..+...|++++|++.++++++.+|.+..++..+|.++...|++++|+..++++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 83 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++...|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~A~~~~~ 134 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR--FDEAIDSFK 134 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc--HHHHHHHHH
Confidence 999999999999999999999999999999999999966655 788888887
No 58
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.54 E-value=1.3e-14 Score=145.20 Aligned_cols=130 Identities=22% Similarity=0.142 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|..+.++..+|..+...|++++|++.|+++++.+|++..++.++|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++..+|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 193 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE--IWLAIHHFE 193 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 55555555555555555555555555555555555433332 344444443
No 59
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.54 E-value=8.7e-14 Score=126.83 Aligned_cols=136 Identities=16% Similarity=0.184 Sum_probs=123.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
..++..++.+|..++..|++++|++.|++++ +| ++.++.++|.++...|++++|+..+++++.++|+++.+++.+|.
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3567788999999999999999999999995 44 78999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccc
Q 011451 91 AYLAMGKFKEALKDFQQVKKLSPNDP----------------DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY 154 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~ 154 (485)
++..+|++++|+..|+++++..|++. .++..++.++...++ +++|+..++
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~------------ 145 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--WKKAEEQLA------------ 145 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--HHHHHHHHH------------
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--HHHHHHHHH------------
Confidence 99999999999999999999998877 899999999976665 788888887
Q ss_pred cccccCCCC
Q 011451 155 QSIEVEPQY 163 (485)
Q Consensus 155 ~~l~~~~~~ 163 (485)
+++++.|..
T Consensus 146 ~al~~~p~~ 154 (213)
T 1hh8_A 146 LATSMKSEP 154 (213)
T ss_dssp HHHTTCCSG
T ss_pred HHHHcCccc
Confidence 677776654
No 60
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.54 E-value=1.5e-13 Score=114.66 Aligned_cols=112 Identities=19% Similarity=0.168 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNA---VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRR 88 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~l 88 (485)
++++.+|..++..|++++|++.|+++++.+|+++ .+++.+|.++...|++++|+..+++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578999999999999999999999999999988 899999999999999999999999999999999 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011451 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
|.++..+|++++|+..|+++++..|+++.+......+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999999999999999988776655544
No 61
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.54 E-value=6.8e-14 Score=147.94 Aligned_cols=145 Identities=11% Similarity=0.075 Sum_probs=131.6
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
...|+.+.+++.+|..+...|++++|++.|+++++++|+++.++.++|.++..+|++++|+++++++++++|++..+++.
T Consensus 17 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 96 (568)
T 2vsy_A 17 RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW 96 (568)
T ss_dssp ----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hhhhHHHhhcCCccccccccccccccccccCCCCC
Q 011451 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV---KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
+|.++..+|++++|++.|+++++.+|+++.++..++.++... ++ +++|...++ ++++.+|...
T Consensus 97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~--~~~A~~~~~------------~al~~~p~~~ 162 (568)
T 2vsy_A 97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA--LDVLSAQVR------------AAVAQGVGAV 162 (568)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT--HHHHHHHHH------------HHHHHTCCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc--HHHHHHHHH------------HHHhcCCccc
Confidence 999999999999999999999999999999999999999777 54 788888877 6777777655
Q ss_pred Cc
Q 011451 165 GA 166 (485)
Q Consensus 165 ~~ 166 (485)
.+
T Consensus 163 ~~ 164 (568)
T 2vsy_A 163 EP 164 (568)
T ss_dssp CH
T ss_pred Ch
Confidence 44
No 62
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=5.2e-13 Score=123.64 Aligned_cols=131 Identities=22% Similarity=0.227 Sum_probs=87.8
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|..+.++..+|.++...|++++|++.|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|
T Consensus 53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 132 (243)
T 2q7f_A 53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34455666666777777777777777777777666666666777777777777777777777777776666666666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++..+|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 183 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM--LDEALSQFA 183 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--CHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 777777777777777777777666666666666666654444 455555555
No 63
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.53 E-value=3.9e-14 Score=141.71 Aligned_cols=130 Identities=21% Similarity=0.179 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|+....+..+|..+...|++++|++.|+++++.+|+++.++.++|.++...|++++|+..++++++++|++..++..+|.
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 211 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN 211 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44455566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++...|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 261 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL--IDLAIDTYR 261 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 66666666666666666666666666666666666544443 455555544
No 64
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.53 E-value=1.2e-13 Score=138.18 Aligned_cols=123 Identities=22% Similarity=0.454 Sum_probs=116.7
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE----------------LNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~ 73 (485)
..+.+..+..+|..++..|++++|++.|++|++ .+|.++.++.++|.++.++|++++|++++++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 355678899999999999999999999999999 7888899999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011451 74 AIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 74 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
|++++|+++.+++.+|.+|..+|++++|+..|++|++++|+++.++..++.++..+++.
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877763
No 65
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.53 E-value=9.1e-15 Score=126.50 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011451 32 QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 32 ~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
.+-+.|+++++++|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++++
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 112 SPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 112 ~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
+|+++.++..++.++..+++ +++|+..++ +++++.|..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 122 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGE--LAEAESGLF------------LAQELIANX 122 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHTTC
T ss_pred CCCCchHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHHCcCC
Confidence 99999999999999977766 788988888 777776643
No 66
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.53 E-value=1.5e-13 Score=132.12 Aligned_cols=105 Identities=32% Similarity=0.493 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
..+..++.+|..++..|++++|++.|+++++.+|+++.++.++|.++..+|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH
Q 011451 92 YLAMGKFKEALKDFQQVKKLSPNDP 116 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~ 116 (485)
+..+|++++|+..|+++++++|+++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccch
Confidence 9999999999999999999998763
No 67
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.2e-13 Score=128.03 Aligned_cols=143 Identities=20% Similarity=0.259 Sum_probs=130.4
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|..+.++..+|.++...|++++|++.|+++++.+|.+..++..+|.++...|++++|+..+++++..+|++..++..+|
T Consensus 87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCc
Q 011451 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (485)
.++...|++++|+..|+++++..|+++.++..++.++...++ +++|+..++ +++++.|....+
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~------------~~~~~~p~~~~~ 229 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN--REKALEMLD------------KAIDIQPDHMLA 229 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--TTHHHHHHH------------HHHHHCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHHccCcchHHH
Confidence 999999999999999999999999999999999999966665 677777777 677666655443
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=1.7e-13 Score=125.02 Aligned_cols=132 Identities=19% Similarity=0.142 Sum_probs=122.9
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..|+.+..+..+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 89 GAAYLAM-GKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~-g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.++... |++++|+..++++++ ..|.+..++..++.++...++ +++|+..++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 137 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ--FGLAEAYLK 137 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 9999999 999999999999999 667778899999999866655 788888877
No 69
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.52 E-value=4.6e-13 Score=132.62 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
..+..++.+|..++..|++++|++.|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34556788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC--------------------------------------------C--CHHHHHHHHHH
Q 011451 92 YLAMGKFKEALKDFQQVKKLSP--------------------------------------------N--DPDAAQKVKEC 125 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p--------------------------------------------~--~~~~~~~l~~~ 125 (485)
|..+|++++|+..|++++++.| + ++.++..++.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 8888888777777777766544 3 77788888888
Q ss_pred HHHHhhhhHHHhhcCCc
Q 011451 126 EKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 126 ~~~~~~~~~~~A~~~~~ 142 (485)
+...++ +++|+..++
T Consensus 223 ~~~~g~--~~~A~~~~~ 237 (365)
T 4eqf_A 223 FHLSGE--FNRAIDAFN 237 (365)
T ss_dssp HHHHTC--HHHHHHHHH
T ss_pred HHHCCC--HHHHHHHHH
Confidence 866655 688887777
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.52 E-value=2e-13 Score=129.14 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=124.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCC
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTK--------LEEYGSAIQDASKAIEIDP 79 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~--------~g~~~eAl~~~~~al~~~p 79 (485)
+..+.+++.+|.+++..|++++|++.|+++++..|++ +.+++.+|.++.. .|++++|+..|++++..+|
T Consensus 49 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 49 EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 3348899999999999999999999999999998854 7789999999999 9999999999999999999
Q ss_pred CChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhh--------
Q 011451 80 RYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPN---DPDAAQKVKECEKAVKK-------- 131 (485)
Q Consensus 80 ~~~~~~-----------------~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~-------- 131 (485)
++..+. +.+|.+|..+|++++|+..|+++++..|+ .+.++..++.++..++.
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~ 208 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQP 208 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence 987766 88999999999999999999999999998 45789999999987732
Q ss_pred hhHHHhhcCCccccccccccccccccccCCCCC
Q 011451 132 LKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 132 ~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
+++++|+..++ ++++..|+..
T Consensus 209 ~~~~~A~~~~~------------~~~~~~p~~~ 229 (261)
T 3qky_A 209 ERYRRAVELYE------------RLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHH------------HHHHHCTTCT
T ss_pred chHHHHHHHHH------------HHHHHCCCCh
Confidence 44677777777 7777777543
No 71
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.52 E-value=7.5e-14 Score=120.45 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=93.8
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011451 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY----------GSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 25 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~----------~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
-+.+.+++|++.|+++++++|+++.+|.++|.++..++++ ++|+..|++|++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999876 599999999999999999999999999999
Q ss_pred cC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011451 95 MG-----------KFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 95 ~g-----------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
+| ++++|+++|++|++++|++..++..+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 85 899999999999999999988777666554
No 72
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=3.8e-13 Score=127.05 Aligned_cols=131 Identities=22% Similarity=0.192 Sum_probs=120.1
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..|..+.+++.+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|+.+++++++++|++..++..+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 38 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.++..+|++++|+..|+++++..|+++......+.+. ..+++++|+..+.
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE---QKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---HHHCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHH---HhcCHHHHHHHHH
Confidence 99999999999999999999999999997766665542 2344788888776
No 73
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=7.8e-13 Score=123.56 Aligned_cols=132 Identities=17% Similarity=0.127 Sum_probs=118.6
Q ss_pred CchhH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 9 SSVSR-AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 9 ~~~~~-a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
.+|.. +..++.+|..+...|++++|++.|+++++.+|.+..++..+|.++...|++++|++.++++++.+|++..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 44555 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 88 RGAAYLAMGKFKEALKDFQQVKK--LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+|.++...|++++|+..|+++++ ..|.++.++..++.++...++ +++|+..++
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 165 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK--PAQAKEYFE 165 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999998 778888889999988866655 688888777
No 74
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2e-13 Score=127.42 Aligned_cols=128 Identities=19% Similarity=0.283 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHccCHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIE--------------------------LNSQNAVYYANRAFAHTKLEEYGS 66 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~--------------------------~~p~~~~~~~~lg~~~~~~g~~~e 66 (485)
.+..+..+|.++...|++++|++.|+++++ .+|.++.++..+|.++...|++++
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 378999999999999999999999999999 667778899999999999999999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 67 AIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 67 Al~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|+..+++++..+|+++.++..+|.++..+|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 231 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE--YASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh--HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999977666 688888877
No 75
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.50 E-value=6.2e-14 Score=138.95 Aligned_cols=130 Identities=12% Similarity=0.078 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011451 32 QAIDLYSQAIELNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (485)
Q Consensus 32 ~A~~~y~~al~~~p~~~----~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 107 (485)
.+...+.+++...+.++ ..++.+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444555555555444 45899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcC--------------------------------Ccccccccccccccc
Q 011451 108 VKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV--------------------------------PESERHSVADSIDYQ 155 (485)
Q Consensus 108 al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~--------------------------------~~~~~~~~a~~~~~~ 155 (485)
+++++|+++.++..++.++...++ +++|+.. ...+....|...+.+
T Consensus 125 al~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 125 CLELQPNNLKALMALAVSYTNTSH--QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHcccc--HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999998876665 3444332 233455667777888
Q ss_pred ccccCCCC
Q 011451 156 SIEVEPQY 163 (485)
Q Consensus 156 ~l~~~~~~ 163 (485)
++...|..
T Consensus 203 al~~~p~~ 210 (365)
T 4eqf_A 203 AAHQNGDM 210 (365)
T ss_dssp HHHHSCSS
T ss_pred HHHhCcCc
Confidence 88888873
No 76
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=1.5e-13 Score=129.95 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY----PKGYYRRG 89 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~----~~~~~~lg 89 (485)
++.++..|..++..|++++|++.|+++++.+|+++.++..+|.++...|++++|+..+++++. .|.+ ..++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999 4444 44599999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
.++..+|++++|+..|+++++.+|+++.++..++.++...++ +++|+..++ ++++..|..
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~------------~al~~~~~~ 141 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--FPLAIQYME------------KQIRPTTTD 141 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--HHHHHHHHG------------GGCCSSCCC
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHhhcCCCc
Confidence 999999999999999999999999999999999999976665 789988888 677665544
No 77
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.50 E-value=5.4e-13 Score=121.99 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=103.8
Q ss_pred chhHHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 011451 10 SVSRAEELKA----------------LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73 (485)
Q Consensus 10 ~~~~a~~~~~----------------lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~ 73 (485)
.|+++.+++. +|.++...|++++|++.|+++++++|+++.++.++|.++...|++++|+.+|++
T Consensus 34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 113 (208)
T 3urz_A 34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113 (208)
T ss_dssp CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5777777887 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCcc
Q 011451 74 AIEIDPRYPKGYYRRGAAYLAMGK--FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPES 143 (485)
Q Consensus 74 al~~~p~~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~ 143 (485)
+++++|+++.+++.+|.+|...|+ .+++...+++++...| ...+++.++.++...++ +++|+..++.
T Consensus 114 al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~--~~~A~~~~~~ 182 (208)
T 3urz_A 114 ILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTR--YEKARNSLQK 182 (208)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHT--HHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccC--HHHHHHHHHH
Confidence 999999999999999999877654 3455666666643222 12345566666655444 5666665553
No 78
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.49 E-value=2.8e-14 Score=140.95 Aligned_cols=132 Identities=23% Similarity=0.392 Sum_probs=97.6
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQDAS 72 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~eAl~~~~ 72 (485)
.++.+..++.+|+.++..|++++|+..|++|++..|++. .++.++|.++..+|++++|+.+++
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467889999999999999999999999999999999877 489999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 73 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++++++|++..+|+++|.+|..+|++++|+.+|+++++++|+++.++..++.+....... .+++...+.
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~-~~~a~~~~~ 323 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL-YQKQKEMYK 323 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888775433321 334444444
No 79
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.49 E-value=8.1e-14 Score=112.46 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYYRR 88 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~--~~~~~~~l 88 (485)
|+.+..++.+|..++..|++++|+..|+++++.+|.+..++.++|.++...|++++|+.+++++++.+|+ +..++..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 5567788999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCCH
Q 011451 89 GAAYLAM-GKFKEALKDFQQVKKLSPNDP 116 (485)
Q Consensus 89 g~~~~~~-g~~~eA~~~~~~al~~~p~~~ 116 (485)
|.++..+ |++++|++++++++...|+++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999998764
No 80
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.49 E-value=3.4e-13 Score=137.21 Aligned_cols=153 Identities=21% Similarity=0.283 Sum_probs=130.6
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
..+|..+..+..+|..++..|++++|++.|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCC
Q 011451 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (485)
+|.+|..+|++++|+..|+++++.+|+++ .++..++.++..... +..|..+...+.+..|...+.++++..|.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 175 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL--RSQALNAFGSGDYTAAIAFLDKILEVCVW 175 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999998 888877666433332 34455555555555555555577777664
No 81
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.49 E-value=6.1e-13 Score=117.82 Aligned_cols=117 Identities=19% Similarity=0.225 Sum_probs=105.8
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHhCCCChHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA-HTKLEEY--GSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~-~~~~g~~--~eAl~~~~~al~~~p~~~~~~~ 86 (485)
.|+.+.+++.+|.++...|++++|++.|+++++++|+++.++..+|.+ +...|++ ++|+..++++++.+|++..+++
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence 466778999999999999999999999999999999999999999999 8899998 9999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011451 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
.+|.++..+|++++|+..|+++++.+|+++.....+..+.
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 9999999999999999999999999999877655554443
No 82
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.3e-14 Score=131.35 Aligned_cols=138 Identities=26% Similarity=0.396 Sum_probs=119.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PK 83 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-------~~ 83 (485)
+..++.+..+|..++..|++++|++.|+++++.+ .++.++..+|.++...|++++|+..++++++++|++ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 5678999999999999999999999999999999 999999999999999999999999999999999887 79
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHhhhhHHHh
Q 011451 84 GYYRRGAAYLAMGKFKEALKDFQQVKKL--------------------------SPNDPDAAQKVKECEKAVKKLKFEEA 137 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--------------------------~p~~~~~~~~l~~~~~~~~~~~~~~A 137 (485)
++..+|.++..+|++++|+..|++++++ .|+++.++..++.++...++ +++|
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A 158 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--WPNA 158 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC--HHHH
Confidence 9999999999999999999999999994 45556666677777644444 5666
Q ss_pred hcCCccccccccccccccccccCCCC
Q 011451 138 IAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 138 ~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
+..++ +++...|..
T Consensus 159 ~~~~~------------~a~~~~~~~ 172 (258)
T 3uq3_A 159 VKAYT------------EMIKRAPED 172 (258)
T ss_dssp HHHHH------------HHHHHCTTC
T ss_pred HHHHH------------HHHhcCccc
Confidence 66666 677666653
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.49 E-value=3.1e-14 Score=153.98 Aligned_cols=174 Identities=11% Similarity=-0.013 Sum_probs=139.6
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAI--------ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al--------~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~ 81 (485)
+|.++.+++..| ...|++++|++.|++++ +.+|++..++..+|.++..+|++++|++.++++++.+|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 445555666666 78999999999999999 9999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCC
Q 011451 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEP 161 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~ 161 (485)
..+|+.+|.++..+|++++|++.|+++++++|+++.++..++.++...++ +++ +..++ ++++++|
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~--~~~-~~~~~------------~al~~~P 531 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN--TDE-HKFYQ------------TVWSTND 531 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--CCT-TCHHH------------HHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--hHH-HHHHH------------HHHHhCC
Confidence 99999999999999999999999999999999999999999999977665 344 44444 8999999
Q ss_pred CCCCccccCCc--ccHHHHHHHHHhhhhcccchHHHHHHHHH
Q 011451 162 QYSGARIEGDV--ITLDFVKKMMDDFKNQKCLHKRYAFQIVL 201 (485)
Q Consensus 162 ~~~~~~l~~~~--l~~~~l~~lie~l~~~~~l~~~~~~~ll~ 201 (485)
.+..++...+. ......+++++.+.+...+.+........
T Consensus 532 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 573 (681)
T 2pzi_A 532 GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLT 573 (681)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHH
Confidence 87766544332 12233555666666655555544433333
No 84
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.49 E-value=7.6e-14 Score=136.69 Aligned_cols=149 Identities=20% Similarity=0.286 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
+++.++.+|..++..|++++|++.|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 93 LAMGKFKEALKDFQQVKKLSP---NDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
...|++++|+..|+++++..| +++.++..++.+...... ...|..+...+.+..|...+.+++...|..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL--RSQALDAFDGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999 899998888654432222 333444444444444555555777766654
No 85
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=2.7e-13 Score=126.75 Aligned_cols=131 Identities=21% Similarity=0.172 Sum_probs=123.5
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE--IDPRYPKGYYR 87 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~--~~p~~~~~~~~ 87 (485)
.|..+.++..+|..+...|++++|++.|+++++.+|.+..++..+|.++...|++++|+..+++++. .+|.+..++..
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 146 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN 146 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence 4566889999999999999999999999999999999999999999999999999999999999999 88889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 88 RGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+|.++...|++++|+..|+++++..|.++.++..++.++...++ +++|+..++
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 199 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE--YVPARQYYD 199 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999966665 788888887
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.49 E-value=2.9e-13 Score=130.60 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=134.1
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC-
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKL-EEYGSAIQDASKAIEIDPRY- 81 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~-g~~~eAl~~~~~al~~~p~~- 81 (485)
.+..+.++.++|.++...|++++|+..|++|+++.|.. +.++.++|.+|... |++++|+.+|++|+++.|..
T Consensus 73 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 34557899999999999999999999999999998754 56899999999996 99999999999999998764
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHhhhhHHHhhcCCcccccccc
Q 011451 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------AAQKVKECEKAVKKLKFEEAIAVPESERHSVA 149 (485)
Q Consensus 82 -----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a 149 (485)
..++..+|.++..+|++++|+..|++++++.|++.. ++..++.++..+++ +++|+..++
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~------- 223 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD--AVAAARTLQ------- 223 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH-------
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC--HHHHHHHHH-------
Confidence 467899999999999999999999999999988754 56778888866555 788888888
Q ss_pred ccccccccccCCCCCCccccCC---------cccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHh
Q 011451 150 DSIDYQSIEVEPQYSGARIEGD---------VITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREML 207 (485)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~l~~~---------~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l 207 (485)
++++++|.+........ ....+...+++..+.....+++.. ..++.+++..+
T Consensus 224 -----~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~-~~~~~~~k~~~ 284 (292)
T 1qqe_A 224 -----EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK-ITILNKIKESI 284 (292)
T ss_dssp -----GGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH-HHHHHHHHHHH
T ss_pred -----HHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH-HHHHHHHHHHh
Confidence 78888887765421100 001223455566665555555544 34444454444
No 87
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=4.1e-13 Score=122.50 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=122.5
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hCCCChHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-EEYGSAIQDASKAIE--IDPRYPKGYY 86 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~-g~~~eAl~~~~~al~--~~p~~~~~~~ 86 (485)
.|+.+.++..+|.++...|++++|++.|+++++.+|.+..++..+|.++... |++++|+..+++++. .+|.+..++.
T Consensus 38 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 117 (225)
T 2vq2_A 38 DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL 117 (225)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence 3556789999999999999999999999999999999999999999999999 999999999999999 6677789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+|.++...|++++|+..|+++++..|+++.++..++.++...++ +++|+..++
T Consensus 118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 171 (225)
T 2vq2_A 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ--LGDADYYFK 171 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999999999999999999999999999976665 788888887
No 88
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.48 E-value=9.2e-13 Score=127.62 Aligned_cols=130 Identities=16% Similarity=0.044 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
|..+.+++.+|..+...| ++++|++.|+++++.+|.++.++..+|.++...|++++|+..+++++...|++..++..+|
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 166 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 445566666777777776 6777777777777777777777777777777777777777777777777776666666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 90 AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 90 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++...|++++|+..|+++++..|+++.++..++.++...++ +++|+..++
T Consensus 167 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~ 217 (330)
T 3hym_B 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE--WKTAEKWFL 217 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc--HHHHHHHHH
Confidence 777777777777777777777777777666666666654444 566666555
No 89
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.48 E-value=9.5e-13 Score=130.01 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=101.2
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID----------- 78 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~----------- 78 (485)
.|..+.++..+|.++...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..+++++..+
T Consensus 94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (368)
T 1fch_A 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 456677888888888888888888888888888888888888888888888777777766666655544
Q ss_pred --------------------------------------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011451 79 --------------------------------------PR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 79 --------------------------------------p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (485)
|+ ++.++..+|.++...|++++|+..|+++++..|+++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 253 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 44 56777888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+..++.++...++ +++|+..++
T Consensus 254 ~~~l~~~~~~~g~--~~~A~~~~~ 275 (368)
T 1fch_A 254 WNKLGATLANGNQ--SEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCC--HHHHHHHHH
Confidence 8888888866555 677777666
No 90
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.48 E-value=4.9e-13 Score=129.57 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCChHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID---------PRYPKG 84 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~---------p~~~~~ 84 (485)
...+..+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..+++++... |..+.+
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 34455566666666666666666666666666666666666666666666666666666666654 444556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
+..+|.++..+|++++|+..|+++++..|+++.++..++.++...++ +++|+..++ ++++++|..
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 303 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN--FENAVDYFH------------TALGLRRDD 303 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC--HHHHHHHHH------------TTTTTCSCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHccCCCc
Confidence 66666666666666666666666666666666666666666644444 455555555 677766654
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.47 E-value=3.1e-13 Score=125.12 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH---HHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK---GYY 86 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~---~~~ 86 (485)
.+..++.+|..++..|++++|++.|+++++..|.+ ..+++.+|.++...|++++|++.|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35789999999999999999999999999999886 479999999999999999999999999999999875 899
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHHhhhhHHHhhcCCcccc
Q 011451 87 RRGAAYLA------------------MGKFKEALKDFQQVKKLSPNDPDAAQ---KVKECEKAVKKLKFEEAIAVPESER 145 (485)
Q Consensus 87 ~lg~~~~~------------------~g~~~eA~~~~~~al~~~p~~~~~~~---~l~~~~~~~~~~~~~~A~~~~~~~~ 145 (485)
.+|.++.. +|++++|+..|+++++..|+++.++. .++.+...+....+..|..++..+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999986 57999999999999999999976543 3344443334433455555666666
Q ss_pred ccccccccccccccCCCC
Q 011451 146 HSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 146 ~~~a~~~~~~~l~~~~~~ 163 (485)
+..|...+.++++..|+.
T Consensus 163 ~~~A~~~~~~~l~~~p~~ 180 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDT 180 (225)
T ss_dssp HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 677777777888877754
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.47 E-value=1.3e-13 Score=132.86 Aligned_cols=139 Identities=17% Similarity=0.064 Sum_probs=128.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|..++.++.+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999987777788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
.+...++.++|+..|+++++.+|+++.++..++.++...++ +++|+..+. ++++.+|.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~------------~~l~~~p~~ 252 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLF------------GHLRXDLTA 252 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTG
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHhccccc
Confidence 89999999999999999999999999999999999976666 788988888 788888876
No 93
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.46 E-value=1e-13 Score=114.37 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=88.5
Q ss_pred HccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 011451 26 RAKKYSQAIDLYSQAIEL---NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEAL 102 (485)
Q Consensus 26 ~~g~~~~A~~~y~~al~~---~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 102 (485)
.+|++++|++.|++++++ +|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 011451 103 KDFQQVKKLSPNDPDAAQKVK 123 (485)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~ 123 (485)
..|+++++..|+++.......
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHH
T ss_pred HHHHHHHHhCCCcHHHHHHHH
Confidence 999999999999988754433
No 94
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.46 E-value=6.8e-14 Score=119.74 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=103.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011451 34 IDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 34 ~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
-..|+++++.+|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|+++++++|
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 114 NDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
+++.++..++.++..+++ +++|+..++ +++++.|..
T Consensus 84 ~~~~~~~~lg~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 119 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGD--LDGAESGFY------------SARALAAAQ 119 (142)
T ss_dssp TCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCC
Confidence 999999999999977766 788988888 677766643
No 95
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.46 E-value=1.4e-13 Score=122.05 Aligned_cols=128 Identities=11% Similarity=0.119 Sum_probs=113.8
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHHcCCH--
Q 011451 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA-YLAMGKF-- 98 (485)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~-- 98 (485)
..+...|++++|++.++++++.+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
++|+..|+++++.+|+++.++..++.++...++ +++|+..++ +++++.|..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQAN--YAQAIELWQ------------KVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHhhCCCC
Confidence 999999999999999999999999999976665 788888888 788777764
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.45 E-value=6.4e-14 Score=124.47 Aligned_cols=141 Identities=13% Similarity=0.012 Sum_probs=119.4
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
++...+.++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+| ++..+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 3444567889999999999999999999999999999999999999999999999999999999999999 887776666
Q ss_pred HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCC
Q 011451 90 AAYL-AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (485)
Q Consensus 90 ~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (485)
.+.. ..++..+|+..++++++.+|+++.++..++.++...++ +++|+..++ ++++.+|.+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~~l~~~p~~~~ 143 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR--DEEALELLW------------NILKVNLGAQD 143 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHTTCTTTTT
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHHhCcccCh
Confidence 5533 33445568999999999999999999999999976665 789988888 78888877643
No 97
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.45 E-value=9e-13 Score=127.52 Aligned_cols=130 Identities=14% Similarity=0.151 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|..+..+..+|..+...|++++|++.++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 91 AYLAMGKFKEALKDFQQVKKLSPN------------DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++..+|++++|+..|+++++..|+ ++.++..++.++..+++ +++|...++
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 310 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR--PDLVELTYA 310 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC--HHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC--HHHHHHHHH
Confidence 999999999999999999999999 78999999999977776 688888777
No 98
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.44 E-value=9.8e-13 Score=129.92 Aligned_cols=128 Identities=13% Similarity=0.239 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
.+..+..+|.++...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 93 LAMGKFKEALKDFQQVKKLSPND-----------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..+|++++|+..|++++++.|++ ..++..++.++..+++ +++|...+.
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 354 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ--SDAYGAADA 354 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC--GGGHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC--hHhHHHhHH
Confidence 99999999999999999999888 8889999999988777 455555544
No 99
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.44 E-value=1.2e-12 Score=126.46 Aligned_cols=142 Identities=10% Similarity=-0.029 Sum_probs=115.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRA--FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg--~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
|...+++..+|.++..+|++++|++.|+++++.+|++.......+ ..+...|++++|+..|+++++.+|+++.+++.+
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 456778889999999999999999999999999998865544434 333345889999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCC
Q 011451 89 GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (485)
|.++..+|++++|...|+++++.+|++++++.+++.++...|+. .+.+..+++ ++++++|+...
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~-~eaa~~~~~------------~~~~~~P~~~~ 270 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP-PEVTNRYLS------------QLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC-HHHHHHHHH------------HHHHHCTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-HHHHHHHHH------------HHHHhCCCChH
Confidence 99999999999999999999999999999999999888777663 123445555 67777776644
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.44 E-value=1.5e-12 Score=120.39 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------ccCHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV---YYANRAFAHTK------------------LEEYGSAIQ 69 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~---~~~~lg~~~~~------------------~g~~~eAl~ 69 (485)
+....+++.+|.+++..|++++|++.|+++++.+|+++. +++.+|.++.. .|++++|+.
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 445689999999999999999999999999999999864 89999999886 578999999
Q ss_pred HHHHHHHhCCCChHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH
Q 011451 70 DASKAIEIDPRYPKGY-----------------YRRGAAYLAMGKFKEALKDFQQVKKLSPNDP---DAAQKVKECEKAV 129 (485)
Q Consensus 70 ~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~---~~~~~l~~~~~~~ 129 (485)
.|+++++.+|++..++ +.+|.+|...|++++|+..|+++++..|+++ .++..++.++..+
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 9999999999987665 6789999999999999999999999999986 6799999999777
Q ss_pred hhhhHHHhhcCCc
Q 011451 130 KKLKFEEAIAVPE 142 (485)
Q Consensus 130 ~~~~~~~A~~~~~ 142 (485)
++ +++|+..++
T Consensus 198 g~--~~~A~~~~~ 208 (225)
T 2yhc_A 198 QM--NAQAEKVAK 208 (225)
T ss_dssp TC--HHHHHHHHH
T ss_pred CC--cHHHHHHHH
Confidence 76 688887776
No 101
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.42 E-value=2.4e-13 Score=128.43 Aligned_cols=138 Identities=14% Similarity=0.122 Sum_probs=121.3
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
.|+.+.++..+|.++...|++++|++.++++++ .|.+ +.++..+|.++...|++++|+..++++++.+|+++.++
T Consensus 33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 111 (272)
T 3u4t_A 33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111 (272)
T ss_dssp TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH
Confidence 355567899999999999999999999999999 4433 55699999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK-ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
..+|.++..+|++++|+..|+++++.+|+++.++..++ .++... ++++|+..++ ++++..|..
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~------------~a~~~~p~~ 175 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK---EYVKADSSFV------------KVLELKPNI 175 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH------------HHHHHSTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH---HHHHHHHHHH------------HHHHhCccc
Confidence 99999999999999999999999999999999999999 665432 5788888777 677777665
No 102
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.42 E-value=8.8e-13 Score=125.71 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=84.8
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccc---
Q 011451 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKI--- 299 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~--- 299 (485)
++.+++|+||++..|..+++..... ..+.++++||+|++|+.+.||+.+|..++ .++.++||||...++..
T Consensus 13 ~i~~iSDiHg~~~~l~~vl~~~~~~-~~D~ii~~GDlv~~g~~~~~~~~~l~~~~-----~~~~v~GNhD~~~~~~~~~~ 86 (270)
T 3qfm_A 13 KIALLSDIHGNTTALEAVLADARQL-GVDEYWLLGDILMPGTGRRRILDLLDQLP-----ITARVLGNWEDSLWHGVRKE 86 (270)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHHHT-TCCEEEECSCCSSSSSCSHHHHHHHHTSC-----EEEECCCHHHHHHHHHHTTC
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCHHHHHHHHHccC-----CEEEEcCChHHHHHHhhccc
Confidence 5899999999999999999876533 34579999999999999999999998773 48889999999876533
Q ss_pred cCchhHHHhh------h-cHHHHHHHHHHhcccccccee--C-CcEEEEeCcc
Q 011451 300 YGFEGEVRSK------L-SETFVELFAEVFCCLPLAHVL--N-QKVFVVHGGL 342 (485)
Q Consensus 300 ~~f~~e~~~~------~-~~~~~~~~~~~f~~lPl~~~i--~-~~~~~vHgGi 342 (485)
++|....... + ...+.....+|++.||....+ + .+++++||..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i~lvHg~p 139 (270)
T 3qfm_A 87 LDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHLP 139 (270)
T ss_dssp SCTTSHHHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEEEEESSBT
T ss_pred cCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEEEEEECCC
Confidence 3333221111 1 122334566899999998755 3 4899999653
No 103
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.41 E-value=2.3e-12 Score=126.02 Aligned_cols=131 Identities=13% Similarity=0.067 Sum_probs=120.0
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CChHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP---RYPKGYY 86 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p---~~~~~~~ 86 (485)
.|+.+.+++.+|.++...|++++|++.|+++++.+|++..++..+|.++...|++++|+..++++++.+| ++..++.
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence 4667889999999999999999999999999999999999999999999999999999999999999999 8888887
Q ss_pred HH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 87 RR------------GAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 87 ~l------------g~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+ |.++...|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~ 178 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE--PRKAISDLK 178 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 77 7899999999999999999999999999999999999966665 688887777
No 104
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.40 E-value=1.8e-12 Score=134.84 Aligned_cols=125 Identities=25% Similarity=0.317 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~ 93 (485)
+.++..+|..+...|++++|++.|+++++.+|+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 444555555555555555555555555555555 5555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCC
Q 011451 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP 141 (485)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~ 141 (485)
..|++++|+..|+++++.+|+++.++..++.++...++ +++|+..+
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~ 367 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGK--FTESEAFF 367 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC--HHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Confidence 55555555555555555555555555555555543333 34444433
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.38 E-value=8.1e-12 Score=113.63 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----------
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---------- 82 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~---------- 82 (485)
.+.+++.+|.++...|++++|++.|+++++.+|+++.++.++|.++...|++++|+..+++++++.|++.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 4679999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011451 83 ------KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 83 ------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
.+++.+|.++..+|++++|+..|++++++.|++..
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999998754
No 106
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.37 E-value=4e-12 Score=105.69 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011451 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (485)
.++.+|.++...|++++|+..++++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred hhhhHHHhhcCCccccccccccccccccccCCCCC
Q 011451 130 KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 130 ~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
++ +++|+..++ ++++.+|.+.
T Consensus 99 g~--~~~A~~~~~------------~al~~~P~~~ 119 (121)
T 1hxi_A 99 HN--ANAALASLR------------AWLLSQPQYE 119 (121)
T ss_dssp HH--HHHHHHHHH------------HHHC------
T ss_pred CC--HHHHHHHHH------------HHHHhCcCCC
Confidence 66 789988888 6777777653
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.37 E-value=1.9e-12 Score=114.90 Aligned_cols=132 Identities=13% Similarity=0.086 Sum_probs=113.9
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHT-KLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~-~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
...|+.+.+++.+|.++...|++++|++.|+++++.+| ++..+..++.+.. ..++..+|+..++++++.+|+++.+++
T Consensus 34 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~ 112 (176)
T 2r5s_A 34 DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC 112 (176)
T ss_dssp HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH
Confidence 34688899999999999999999999999999999999 8887776665533 334555789999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 87 RRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+|.++..+|++++|+..|+++++.+|+. +.++..++.++...++ .++|+..++
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~--~~~A~~~y~ 168 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ--GNAIASKYR 168 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS--SCHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC--CCcHHHHHH
Confidence 99999999999999999999999999976 5699999999987776 355655554
No 108
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.37 E-value=8.3e-12 Score=126.87 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhC
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANR------------AFAHTKLEEYGSAIQDASKAIEID 78 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~l------------g~~~~~~g~~~eAl~~~~~al~~~ 78 (485)
|..+.++..+|..+...|++++|++.|+++++.+|++..++..+ |.++...|++++|+..+++++..+
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34456677777777777777777777777777777776666555 677777777777777777777777
Q ss_pred CCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccc
Q 011451 79 PRYP----KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY 154 (485)
Q Consensus 79 p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~ 154 (485)
|+++ .++..+|.++..+|++++|+..++++++..|+++.++..++.++...++ +++|+..++
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~------------ 353 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM--YDEAIQDYE------------ 353 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC--HHHHHHHHH------------
Confidence 7663 3566677777777777777777777777777777777777777755444 566666666
Q ss_pred cccccCCCC
Q 011451 155 QSIEVEPQY 163 (485)
Q Consensus 155 ~~l~~~~~~ 163 (485)
++++++|..
T Consensus 354 ~al~~~p~~ 362 (450)
T 2y4t_A 354 TAQEHNEND 362 (450)
T ss_dssp HHHTTSSSC
T ss_pred HHHHhCcch
Confidence 777776664
No 109
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.36 E-value=6.2e-12 Score=132.76 Aligned_cols=130 Identities=17% Similarity=0.082 Sum_probs=107.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|+.+..+..+|..|.+.|++++|++.|+++++.+|.+..+|..+|.++.+.|++++|++.|+++++..|++..++..+|.
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+|...|++++|++.|+++++..|+++.++..++.++...++ +++|+..++
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 499 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD--MQTAINHFQ 499 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 88888888888888888888888888888888888765554 677777776
No 110
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.8e-12 Score=106.77 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011451 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (485)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 124 (485)
|..+..+..+|..++..|++++|+..|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|+++.++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHhhcCCc
Q 011451 125 CEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 125 ~~~~~~~~~~~~A~~~~~ 142 (485)
++..+++ +++|+..++
T Consensus 81 ~~~~~~~--~~~A~~~~~ 96 (126)
T 3upv_A 81 AQIAVKE--YASALETLD 96 (126)
T ss_dssp HHHHTTC--HHHHHHHHH
T ss_pred HHHHHhC--HHHHHHHHH
Confidence 9977666 788888888
No 111
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.35 E-value=1.9e-12 Score=108.67 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------H
Q 011451 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD-------A 118 (485)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~-------~ 118 (485)
+.+.++.++|.++++.|++++|+.+|++|++++|+++.+|.++|.+|..+|++++|+..|+++++++|++.. +
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 346788999999999999999999999999999999999999999999999999999999999999987754 4
Q ss_pred HHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+..+|.++..+++ +++|+..++
T Consensus 86 ~~~lg~~~~~~~~--~~~A~~~~~ 107 (127)
T 4gcn_A 86 MSRAGNAFQKQND--LSLAVQWFH 107 (127)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCC--HHHHHHHHH
Confidence 5556666644444 677777666
No 112
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.35 E-value=2.3e-12 Score=111.36 Aligned_cols=108 Identities=16% Similarity=0.111 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------ChH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 011451 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-------YPK-----GYYRRGAAYLAMGKFKEALKDFQQVKKL--- 111 (485)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~eA~~~~~~al~~--- 111 (485)
.+..+.++|..++..|+|++|+..|++|++++|+ +.. +|.++|.++..+|++++|+.+|++|+++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3567889999999999999999999999999999 443 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCccc
Q 011451 112 ----SPNDPDAA----QKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARI 168 (485)
Q Consensus 112 ----~p~~~~~~----~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l 168 (485)
+|++..+| +++|.++..+++ +++|+..++ ++++++|...+..-
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~------------kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFK------------KVVEMIEERKGETP 140 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHHHCCSCCT
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHH------------HHHhcCCCcHHHHH
Confidence 99999999 999999977777 799999988 89999888766543
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.35 E-value=2.6e-12 Score=123.76 Aligned_cols=132 Identities=11% Similarity=-0.020 Sum_probs=120.5
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..|+++.+++.+|.++...|++++|++.|+++++.+|+........+..+...++.++|++.+++++..+|+++.+++.+
T Consensus 146 ~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l 225 (287)
T 3qou_A 146 LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL 225 (287)
T ss_dssp HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH
Confidence 35778899999999999999999999999999999998888888888889999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 89 GAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.++...|++++|+..|+++++.+|++ ..++..++.++..+++. ++|...++
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~--~~a~~~~r 279 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG--DALASXYR 279 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC--CcHHHHHH
Confidence 999999999999999999999999998 88999999999888863 45554444
No 114
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=3e-11 Score=117.21 Aligned_cols=131 Identities=14% Similarity=0.007 Sum_probs=118.4
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~-~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
.|+.+.+|..+|..+...|++++|.+.|+++++++|.++. +|.++|.++.+.|++++|+..|++|++.+|....+|...
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 174 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5777889999999999999999999999999999999987 999999999999999999999999999999998888877
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 89 GAAYLA-MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 89 g~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+.+... +|++++|...|+++++..|+++.+|..++..+...++ +++|..+++
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~ 227 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE--DNNTRVLFE 227 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 666443 7999999999999999999999999999988855544 788888888
No 115
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.34 E-value=1.4e-12 Score=126.10 Aligned_cols=111 Identities=11% Similarity=0.029 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
..+..++.+|..++..|++++|++.|+++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 011451 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKV 122 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l 122 (485)
+...|++++|+..|+++++..|++...+..+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 129 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVN 129 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 9999999999999999999999998877666
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.33 E-value=2.6e-11 Score=100.44 Aligned_cols=105 Identities=32% Similarity=0.543 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|..+..+..+|..+...|++++|++.++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 111 (136)
T 2fo7_A 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111 (136)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Q 011451 91 AYLAMGKFKEALKDFQQVKKLSPND 115 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~ 115 (485)
++...|++++|...+++++..+|++
T Consensus 112 ~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 112 AYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999998863
No 117
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.33 E-value=9.9e-12 Score=131.23 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC-hHHHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY-PKGYY 86 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~------~p~~-~~~~~ 86 (485)
+..+..+|..+...|++++|++.|+++++.+|.++.+|..+|.++.+.|++++|++.++++++. +|++ ..+|.
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 3444444444445555555555555555445544555555555555555555555555555444 3332 34444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+|.++...|++++|+..|+++++..|+++.++..++.++...++ +++|...++
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 574 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI--PGLAITHLH 574 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 555555555555555555555555555555555555554433333 344444444
No 118
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.33 E-value=4e-12 Score=111.20 Aligned_cols=110 Identities=22% Similarity=0.239 Sum_probs=100.8
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011451 44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (485)
Q Consensus 44 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (485)
++.++.++..+|.+++..|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++|+++.++..++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcc
Q 011451 124 ECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 124 ~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
.++..+++ +++|+..++ ++++++|....++
T Consensus 87 ~~~~~~g~--~~~A~~~~~------------~al~~~p~~~~~~ 116 (164)
T 3sz7_A 87 LARFDMAD--YKGAKEAYE------------KGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHTTC--HHHHHHHHH------------HHHHHHSSSCCHH
T ss_pred HHHHHccC--HHHHHHHHH------------HHHHhCCCchHHH
Confidence 99977666 788888888 8888888776543
No 119
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.33 E-value=9.9e-12 Score=119.95 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=99.5
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|+++.+++.+|..+...|++++|++.|++ |.+..++..+|.++.++|++++|++.++++++.+|++.......+
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a 171 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence 466677777777777777777777777776 777777777888888888888888888888877777654333222
Q ss_pred --HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCc
Q 011451 90 --AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (485)
Q Consensus 90 --~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (485)
.++...|++++|+..|+++++..|+++.++..++.++...++ +++|...++ ++++.+|....+
T Consensus 172 ~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~eA~~~l~------------~al~~~p~~~~~ 236 (291)
T 3mkr_A 172 WVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR--WEAAEGVLQ------------EALDKDSGHPET 236 (291)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCCHHH
Confidence 223334778888888888888888888777777777755555 677777777 888888876554
No 120
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.33 E-value=4.2e-12 Score=119.78 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=114.4
Q ss_pred HHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 011451 23 EAFRAKKYSQAIDLYSQAIELN----SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF 98 (485)
Q Consensus 23 ~~~~~g~~~~A~~~y~~al~~~----p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 98 (485)
.+...+++++|++.|+++++.. |.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 3445689999999999999973 567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 99 KEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 99 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
++|+..|+++++.+|+++.++..++.++...++ +++|+..++ +++++.|..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~a~~~~~~~ 144 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR--DKLAQDDLL------------AFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTC
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc--HHHHHHHHH------------HHHHhCCCC
Confidence 999999999999999999999999999966665 788888888 666666654
No 121
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=6.1e-12 Score=118.63 Aligned_cols=132 Identities=21% Similarity=0.228 Sum_probs=119.4
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI--- 77 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~--- 77 (485)
..|..+.++..+|.++...|++++|++.|++++++. |....++.++|.++...|++++|+.++++++.+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 117 (283)
T 3edt_B 38 DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 117 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999999999883 666789999999999999999999999999998
Q ss_pred -----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 78 -----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 78 -----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+|....++..+|.++..+|++++|+..|+++++. .|....++..++.++...++ +++|+..++
T Consensus 118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 193 (283)
T 3edt_B 118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK--YQDAETLYK 193 (283)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 5677889999999999999999999999999998 66677889999999977666 688888777
No 122
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.32 E-value=3.9e-12 Score=134.36 Aligned_cols=124 Identities=16% Similarity=0.157 Sum_probs=97.9
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 011451 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (485)
Q Consensus 27 ~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 106 (485)
.|++++|++.|+++++.+|+++.++..+|.++...|++++|++.++++++++|++..++..+|.+|..+|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCC
Q 011451 107 QVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 107 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
++++++|+++.++..++.++...++ +++|+..++ ++++++|...
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~------------~al~~~p~~~ 125 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQ--AEAAAAAYT------------RAHQLLPEEP 125 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCTTCH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH------------HHHHhCCCCH
Confidence 9999999999999999999977666 788888888 7777777553
No 123
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.31 E-value=1.4e-12 Score=105.47 Aligned_cols=94 Identities=31% Similarity=0.386 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYY 86 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~------~~~~~ 86 (485)
.+..++.+|..++..|++++|++.|+++++.+|+++.++.++|.++..+|++++|+..++++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456777777777777777777777777777777777777777777777777777777777777777777 67777
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 011451 87 RRGAAYLAMGKFKEALKDFQ 106 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~ 106 (485)
.+|.++..+|++++|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777776666665544
No 124
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.31 E-value=9e-12 Score=120.12 Aligned_cols=107 Identities=22% Similarity=0.148 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH-
Q 011451 12 SRAEELKALANEAFRA-KKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK- 83 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~-g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~- 83 (485)
..+.++..+|.+|... |++++|++.|++|+++.|.. ..++.++|.++..+|++++|+.+|++++++.|++..
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 3467899999999996 99999999999999998754 567999999999999999999999999999988653
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011451 84 ------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 84 ------~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (485)
++..+|.++..+|++++|+.+|+++++++|+....
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 67899999999999999999999999999987764
No 125
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.30 E-value=6e-12 Score=130.85 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~ 93 (485)
+..+..+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..+++++..+|++..++..+|.++.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcccc
Q 011451 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIE 169 (485)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~ 169 (485)
.+|++++|+..|+++++..|+++.++..++.++...++ +++|+..++ ++++..|........
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~------------~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD--FDTAIKQYD------------IAKRLEEVQEKIHVG 417 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHHHHCSSCSST
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC--HHHHHHHHH------------HHHHcCCcchhhHHH
Confidence 99999999999999999999999999999999966665 788888888 788777766555443
No 126
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.30 E-value=3.4e-11 Score=98.48 Aligned_cols=101 Identities=11% Similarity=0.199 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011451 31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 31 ~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 110 (485)
++|++.|+++++.+|+++.++.++|.++...|++++|+..+++++.++|++..+|+.+|.++..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHHhh
Q 011451 111 LSPN--DPDAAQKVKECEKAVKK 131 (485)
Q Consensus 111 ~~p~--~~~~~~~l~~~~~~~~~ 131 (485)
+.|+ +..+...+...+..+++
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 9884 44555566666555554
No 127
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=3.4e-11 Score=123.33 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=105.9
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL---------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~---------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~-- 78 (485)
.+..+..+..+|.++..+|++++|++.|++|+++ +|....+|.++|.+|..+|++++|+.++++++++.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445678889999999999999999999999986 67788999999999999999999999999999873
Q ss_pred ------CCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011451 79 ------PRYPKGYYRRGAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 79 ------p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
+..+.++..+|.++...| ++++|+.+|+++++++|++++++..++.+...++.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN 187 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 456788999998887764 79999999999999999999999999988765543
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=1.9e-11 Score=128.92 Aligned_cols=148 Identities=8% Similarity=0.053 Sum_probs=132.5
Q ss_pred CchhHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE--EYGSAIQDASKAIE 76 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~----------~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g--~~~eAl~~~~~al~ 76 (485)
.+|+...+|+..+.++...++ +++|++.++++++.+|++..+|..++.++...+ ++++|++.++++++
T Consensus 58 ~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~ 137 (567)
T 1dce_A 58 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 137 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh
Confidence 357888999999999999998 999999999999999999999999999999999 77999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh------------hhhHHHhhcCCcc
Q 011451 77 IDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK------------KLKFEEAIAVPES 143 (485)
Q Consensus 77 ~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~------------~~~~~~A~~~~~~ 143 (485)
++|.+..+|..++.+...+| .+++|++++.++++.+|++..+|.+++.++..+. ...++++++++.
T Consensus 138 ~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~- 216 (567)
T 1dce_A 138 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ- 216 (567)
T ss_dssp HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH-
T ss_pred hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH-
Confidence 99999999999999999999 9999999999999999999999999999987752 133556665555
Q ss_pred ccccccccccccccccCCCCCCccc
Q 011451 144 ERHSVADSIDYQSIEVEPQYSGARI 168 (485)
Q Consensus 144 ~~~~~a~~~~~~~l~~~~~~~~~~l 168 (485)
+++.++|....++.
T Consensus 217 -----------~ai~~~P~~~saW~ 230 (567)
T 1dce_A 217 -----------NAFFTDPNDQSAWF 230 (567)
T ss_dssp -----------HHHHHCSSCSHHHH
T ss_pred -----------HHHhhCCCCccHHH
Confidence 78888887766543
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.28 E-value=1e-12 Score=129.66 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=116.3
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHH
Q 011451 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGA 90 (485)
Q Consensus 26 ~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---------------~~~~~~lg~ 90 (485)
..+++++|++.|+++++.+|.++.++.++|.+++..|++++|+..|++|+.++|++ ..+|.++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCC
Q 011451 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSG 165 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 165 (485)
+|..+|++++|+.+|+++++++|+++.+++.++.++..+++ +++|+..++ ++++++|....
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--~~~A~~~~~------------~al~l~P~~~~ 265 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--FELARADFQ------------KVLQLYPNNKA 265 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCSSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHHHCCCCHH
Confidence 99999999999999999999999999999999999977666 789988888 88888887644
No 130
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=1.1e-11 Score=116.73 Aligned_cols=104 Identities=23% Similarity=0.248 Sum_probs=97.4
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-- 77 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~-- 77 (485)
...+..+.++..+|.++...|++++|++.|+++++. +|....++.++|.++...|++++|+.++++++..
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 79 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999999999998 4677889999999999999999999999999998
Q ss_pred ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011451 78 ------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 78 ------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
+|....++..+|.++..+|++++|+..|+++++.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777889999999999999999999999999986
No 131
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=5.2e-11 Score=115.56 Aligned_cols=141 Identities=13% Similarity=0.028 Sum_probs=120.1
Q ss_pred chhHHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011451 10 SVSRAEELKALANEAFR-------AKKY-------SQAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~-------~g~~-------~~A~~~y~~al~-~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~a 74 (485)
.|..+++|+.+|..+.. .|++ ++|+..|++|++ ++|++..+|..+|.++...|++++|.+.|+++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 57788999999999874 4885 999999999999 79999999999999999999999999999999
Q ss_pred HHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCcccccccccccc
Q 011451 75 IEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSID 153 (485)
Q Consensus 75 l~~~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~ 153 (485)
++++|.++. +|..+|.++...|++++|...|+++++..|.+..++...+..... ..+++++|...++
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-~~~~~~~A~~~~~----------- 193 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSVAFKIFE----------- 193 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH-TSCCHHHHHHHHH-----------
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcCCHHHHHHHHH-----------
Confidence 999999987 999999999999999999999999999999988777654443211 1234677777666
Q ss_pred ccccccCCCC
Q 011451 154 YQSIEVEPQY 163 (485)
Q Consensus 154 ~~~l~~~~~~ 163 (485)
++++..|..
T Consensus 194 -~al~~~p~~ 202 (308)
T 2ond_A 194 -LGLKKYGDI 202 (308)
T ss_dssp -HHHHHHTTC
T ss_pred -HHHHhCCCc
Confidence 777776653
No 132
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.28 E-value=1.7e-11 Score=103.17 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=97.2
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011451 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (485)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (485)
..+|.++..+..+|.+++..|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCC
Q 011451 122 VKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQ 162 (485)
Q Consensus 122 l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~ 162 (485)
++.++...++ +++|+..++ +++++.|.
T Consensus 83 l~~~~~~~~~--~~~A~~~~~------------~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMES--YDEAIANLQ------------RAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTC--HHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHhh--HHHHHHHHH------------HHHHHChh
Confidence 9999977666 788888888 67766665
No 133
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.1e-11 Score=127.91 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
|..+.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 380 (514)
T 2gw1_A 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE 380 (514)
T ss_dssp TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence 33445556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 011451 91 AYLAMGKFKEALKDFQQVKKLSPNDPD------AAQKVKECEKA 128 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~l~~~~~~ 128 (485)
++...|++++|+..|+++++..|+++. ++..++.++..
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 666666666666666666665555543 55555555533
No 134
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.26 E-value=7.3e-11 Score=91.52 Aligned_cols=86 Identities=31% Similarity=0.415 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGA 90 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~ 90 (485)
+..+..++.+|..+...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcC
Q 011451 91 AYLAMG 96 (485)
Q Consensus 91 ~~~~~g 96 (485)
++..+|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776543
No 135
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.25 E-value=9.4e-11 Score=111.14 Aligned_cols=125 Identities=16% Similarity=0.239 Sum_probs=112.7
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
.|.++.+++.+|..+...|++++|++.|+++++ |.++.++..+|.++.. .+++++|+.+|+++++.+ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 356788999999999999999999999999998 8889999999999999 999999999999999985 89999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhhhHHHhhcCCc
Q 011451 86 YRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKA----VKKLKFEEAIAVPE 142 (485)
Q Consensus 86 ~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~A~~~~~ 142 (485)
+.+|.+|.. .+++++|+..|+++++. +++.++..++.++.. .+ ++++|+..++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~--~~~~A~~~~~ 138 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTR--DFKKAVEYFT 138 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCccc--CHHHHHHHHH
Confidence 999999999 99999999999999987 489999999999865 44 4788888777
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.24 E-value=1.4e-11 Score=99.04 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=91.1
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 011451 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN--DPDAAQ 120 (485)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~ 120 (485)
++|+++.++..+|.++...|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|+++++..|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHH-hhhhHHHhhcCCc
Q 011451 121 KVKECEKAV-KKLKFEEAIAVPE 142 (485)
Q Consensus 121 ~l~~~~~~~-~~~~~~~A~~~~~ 142 (485)
.++.++... ++ +++|+..++
T Consensus 81 ~l~~~~~~~~~~--~~~A~~~~~ 101 (112)
T 2kck_A 81 AKADALRYIEGK--EVEAEIAEA 101 (112)
T ss_dssp HHHHHHTTCSSC--SHHHHHHHH
T ss_pred HHHHHHHHHhCC--HHHHHHHHH
Confidence 999998665 55 678887777
No 137
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.8e-11 Score=126.33 Aligned_cols=127 Identities=20% Similarity=0.275 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYL 93 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~ 93 (485)
+..+..+|.++...|++++|++.|+++++.+|.+..++..+|.++...|++++|+..+++++..+|++..++..+|.++.
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 94 AMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..|++++|+..|+++++..|+++.++..++.++...++ +++|+..++
T Consensus 350 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~ 396 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND--FDKALKQYD 396 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 99999999999999999999999999999999977665 556555443
No 138
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=1.7e-11 Score=117.54 Aligned_cols=133 Identities=26% Similarity=0.286 Sum_probs=117.0
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELN--------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-- 77 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~-- 77 (485)
...+..+.++..+|.++...|++++|++.|++++++. |....++..+|.++...|++++|+.++++++..
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3457788999999999999999999999999999884 566788999999999999999999999999998
Q ss_pred ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------
Q 011451 78 ------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL---------------------------------------- 111 (485)
Q Consensus 78 ------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------------------------------------- 111 (485)
+|....++..+|.++..+|++++|+..|+++++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 6777889999999999999999999999999985
Q ss_pred ---------CCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 112 ---------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 112 ---------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.|..+.++..++.++...++ +++|+.+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 302 (311)
T 3nf1_A 265 GWYKACKVDSPTVTTTLKNLGALYRRQGK--FEAAETLEE 302 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHhhcCCCCchHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 35556778888888866665 688887776
No 139
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=4.3e-11 Score=114.68 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=117.7
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-- 78 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~-- 78 (485)
..+..+.++..+|.++...|++++|++.|+++++. .|....++..+|.++...|++++|+.++++++++.
T Consensus 64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999988 35667899999999999999999999999999884
Q ss_pred ------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 79 ------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL--------SPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 79 ------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|....++..+|.++..+|++++|+..|+++++. .|....++..++.++...++ +++|+..++
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 219 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK--FKQAETLYK 219 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 556788999999999999999999999999998 66667788899999977766 677777766
No 140
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.22 E-value=2.8e-12 Score=131.99 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=113.8
Q ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHH
Q 011451 26 RAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---------------PKGYYRRGA 90 (485)
Q Consensus 26 ~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---------------~~~~~~lg~ 90 (485)
..+++++|++.|+++++..|..+.++.++|.+++..|++++|+..|++|++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcc
Q 011451 91 AYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
+|..+|++++|+.+|+++++++|+++.+++.++.++..+++ +++|+..++ ++++++|.+..+.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--~~~A~~~~~------------~al~l~P~~~~a~ 388 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--FESAKGDFE------------KVLEVNPQNKAAR 388 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHTTC----CHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--HHHHHHHHH------------HHHHhCCCCHHHH
Confidence 99999999999999999999999999999999999977665 788888888 8888888776543
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.21 E-value=8.7e-12 Score=112.66 Aligned_cols=132 Identities=15% Similarity=0.079 Sum_probs=108.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---------------
Q 011451 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--------------- 82 (485)
Q Consensus 18 ~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~--------------- 82 (485)
-..+......+++++|.+.++......+..+..+..+|.+++..|++++|+..|++++.+.|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 34556667788999999998888887788899999999999999999999999999999999987
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCC
Q 011451 83 -KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEP 161 (485)
Q Consensus 83 -~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~ 161 (485)
.++.++|.++..+|++++|+.+++++++++|+++.++..++.++..+++ +++|+..++ ++++++|
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~--~~~A~~~~~------------~al~~~p 153 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF--LEEAKENLY------------KAASLNP 153 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC--HHHHHHHHH------------HHHHHST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc--HHHHHHHHH------------HHHHHCC
Confidence 8999999999999999999999999999999999999999999977766 788888888 7777777
Q ss_pred CC
Q 011451 162 QY 163 (485)
Q Consensus 162 ~~ 163 (485)
..
T Consensus 154 ~~ 155 (198)
T 2fbn_A 154 NN 155 (198)
T ss_dssp TC
T ss_pred Cc
Confidence 55
No 142
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.20 E-value=5.7e-11 Score=118.66 Aligned_cols=133 Identities=17% Similarity=0.195 Sum_probs=115.7
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~-------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~ 80 (485)
...+..+.+++.+|.++...|++++|++.+++|+++.+. .+.++.++|.++..+|++++|+.++++|+++.+.
T Consensus 137 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 445668899999999999999999999999999998543 3568999999999999999999999999988654
Q ss_pred Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 81 YP------KGYYRRGAAYLAMGKFKEALKDFQQVKK-----LS-PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 81 ~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~-----~~-p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.. .++.++|.+|..+|++++|+.+|+++++ .+ |..+.++..++.++...++ +++|+.+++
T Consensus 217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~ 288 (383)
T 3ulq_A 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK--IDKAHEYHS 288 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 33 5899999999999999999999999999 45 7778889999999976665 788888877
No 143
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=8.9e-11 Score=113.63 Aligned_cols=121 Identities=11% Similarity=-0.080 Sum_probs=74.8
Q ss_pred chhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhCCC
Q 011451 10 SVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAH----TKL---EEYGSAIQDASKAIEIDPR 80 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~lg~~~----~~~---g~~~eAl~~~~~al~~~p~ 80 (485)
+|+...+|...+.++...+ ++++|++.++++|..+|++..+|..++.++ ... ++++++++.++++++.+|.
T Consensus 63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 3555556666666666666 666666666666666666666666666666 444 4566666666666666666
Q ss_pred ChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011451 81 YPKGYYRRGAAYLAMGKFK--EALKDFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~--eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+..+|..++.++..+|+++ ++++.+.++++.+|.|..+|.+.+.+...++
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 6666666666666666665 6666666666666666666666665554443
No 144
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.20 E-value=3.7e-11 Score=116.63 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--- 81 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~--- 81 (485)
...+.++..+|.+|..+|++++|++.|++|+++.+. .+.++.++|.+|.. |++++|+.+|++|+.+.|..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 455678888899999999999999999999988543 24678889999988 99999999999999887653
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhhhhHHHhhcCCccccccccccc
Q 011451 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSI 152 (485)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~ 152 (485)
..++.++|.+|..+|++++|+.+|++++++.|++. .++..++.++...+ ++++|+..++
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~A~~~~~---------- 219 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA--DYVAAQKCVR---------- 219 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHH----------
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC--CHHHHHHHHH----------
Confidence 56788899999999999999999999998876543 24445555553334 4677777777
Q ss_pred cccccccCCCCCC
Q 011451 153 DYQSIEVEPQYSG 165 (485)
Q Consensus 153 ~~~~l~~~~~~~~ 165 (485)
+++ +.|.+..
T Consensus 220 --~al-~~p~~~~ 229 (307)
T 2ifu_A 220 --ESY-SIPGFSG 229 (307)
T ss_dssp --HHT-TSTTSTT
T ss_pred --HHh-CCCCCCC
Confidence 777 7777654
No 145
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.19 E-value=8.1e-11 Score=100.82 Aligned_cols=132 Identities=15% Similarity=0.219 Sum_probs=110.9
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~- 81 (485)
+.+..+.++..+|..+...|++++|++.++++++..+.. ..++..+|.++...|++++|+..+++++.+.+..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 456678899999999999999999999999999986542 2589999999999999999999999999876543
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 -----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..++..+|.++..+|++++|+..++++++..+.. ..++..++.++...++ +++|+..++
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 153 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 153 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC--HHHHHHHHH
Confidence 5688999999999999999999999999874322 3467778888866655 677777766
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.18 E-value=2.5e-10 Score=98.78 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=93.1
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|..+.++..+|.++...|++++|++.|+++++.+|.++.++..+|.++...|++++|+.++++++.++|++..++..++
T Consensus 43 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 122 (166)
T 1a17_A 43 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122 (166)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999885555
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHh
Q 011451 90 AA--YLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 90 ~~--~~~~g~~~eA~~~~~~al~~ 111 (485)
.+ +...|++++|+..++++...
T Consensus 123 ~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 123 ECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccchHHH
Confidence 44 88899999999999877554
No 147
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=7.6e-11 Score=120.71 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=121.1
Q ss_pred chhHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCChHH
Q 011451 10 SVSRAEELKALANEAFRA--KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK---LEEYGSAIQDASKAIEIDPRYPKG 84 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~--g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~---~g~~~eAl~~~~~al~~~p~~~~~ 84 (485)
.+..+..+..+|..+... ++|++|++.|++|++++|+++.++..+|.++.. .++.++|++.+++|++++|++..+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 345567788888777654 579999999999999999999999999998665 467789999999999999999999
Q ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccC
Q 011451 85 YYRRGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVE 160 (485)
Q Consensus 85 ~~~lg~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~ 160 (485)
+..+|..+..+ +++++|...+++++..+|+++.++..++.++...++ +++|+..++ ++++..
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--~~~A~~~~~------------~al~~~ 277 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--PDKAIELLK------------KALEYI 277 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--hHHHHHHHH------------HHHHhC
Confidence 99999877665 677899999999999999999999999999976666 788888888 788887
Q ss_pred CCCCCccc
Q 011451 161 PQYSGARI 168 (485)
Q Consensus 161 ~~~~~~~l 168 (485)
|....+..
T Consensus 278 p~~~~~~~ 285 (472)
T 4g1t_A 278 PNNAYLHC 285 (472)
T ss_dssp TTCHHHHH
T ss_pred CChHHHHH
Confidence 77655433
No 148
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.18 E-value=5.3e-11 Score=103.77 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011451 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEI------------------DPRYPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (485)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 108 (485)
.+..+..+|..++..|++++|+..|++|+.+ +|.+..+|+++|.+|..+|++++|+.+++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3678899999999999999999999999999 7777899999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCC
Q 011451 109 KKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYS 164 (485)
Q Consensus 109 l~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~ 164 (485)
++++|+++.+++.+|.++..+++ +++|+..++ ++++++|...
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~--~~~A~~~~~------------~al~l~p~~~ 131 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWK--LDEAEEDLK------------LLLRNHPAAA 131 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHHCGGGH
T ss_pred HhcCCcchHHHHHHHHHHHHHhc--HHHHHHHHH------------HHHhcCCCCH
Confidence 99999999999999999977766 788988888 7888877643
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.17 E-value=3.1e-10 Score=110.62 Aligned_cols=148 Identities=9% Similarity=0.051 Sum_probs=131.6
Q ss_pred CCchhHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHH
Q 011451 8 NSSVSRAEELKALANEAFRAKK----------YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE--YGSAIQDASKAI 75 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~----------~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~--~~eAl~~~~~al 75 (485)
..+|+...+|...+.++...+. ++++++.+++++..+|++..+|..++.++...+. ++++++++.+++
T Consensus 58 ~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l 137 (331)
T 3dss_A 58 GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL 137 (331)
T ss_dssp TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Confidence 3468889999999999988776 7899999999999999999999999999999994 999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh------------hhHHHhhcCCc
Q 011451 76 EIDPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK------------LKFEEAIAVPE 142 (485)
Q Consensus 76 ~~~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------~~~~~A~~~~~ 142 (485)
+.+|.|..+|...+.+...+|. ++++++++.++++.+|.|..+|.+++.+...+.. ..+++++.+..
T Consensus 138 ~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~ 217 (331)
T 3dss_A 138 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 217 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHH
Confidence 9999999999999999999999 6999999999999999999999999999877621 23556666665
Q ss_pred cccccccccccccccccCCCCCCcc
Q 011451 143 SERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 143 ~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
+++..+|....++
T Consensus 218 ------------~ai~~~P~d~SaW 230 (331)
T 3dss_A 218 ------------NAFFTDPNDQSAW 230 (331)
T ss_dssp ------------HHHHHSTTCHHHH
T ss_pred ------------HHHHhCCCCHHHH
Confidence 8888888887765
No 150
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.17 E-value=5.3e-11 Score=94.38 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=79.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 011451 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAV-YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (485)
Q Consensus 17 ~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~-~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (485)
.+.+|..++..|++++|++.|+++++.+|+++. ++..+|.++...|++++|+.+|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 357888999999999999999999999999998 99999999999999999999999999999998888754
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 011451 96 GKFKEALKDFQQVKKLSPNDP 116 (485)
Q Consensus 96 g~~~eA~~~~~~al~~~p~~~ 116 (485)
+.+.+|+..|+++...+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 667788888888888777654
No 151
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.17 E-value=2.6e-10 Score=88.35 Aligned_cols=84 Identities=30% Similarity=0.497 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011451 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKEC 125 (485)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 125 (485)
.++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 011451 126 EKAV 129 (485)
Q Consensus 126 ~~~~ 129 (485)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7543
No 152
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.1e-10 Score=94.03 Aligned_cols=94 Identities=16% Similarity=0.240 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 011451 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQ 120 (485)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~ 120 (485)
++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 78888
Q ss_pred HHHHHHHHHhhhhHHHhhcCCc
Q 011451 121 KVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 121 ~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++.++..++. +++|+..++
T Consensus 83 ~~~~~~~~~~~--~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGS--VQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHC--CCCCSSSSS
T ss_pred HHHHHHHHHHh--HhhhHhHHH
Confidence 88888866664 344444433
No 153
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.15 E-value=1.8e-10 Score=109.13 Aligned_cols=126 Identities=21% Similarity=0.237 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCh
Q 011451 11 VSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYP 82 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~~al~~~p~~~ 82 (485)
+..+.+++.+|..+.. .+++++|++.|+++++.+ ++.++.++|.+|.. .+++++|+.+++++++. +++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCc
Confidence 4556789999999999 999999999999999985 89999999999999 99999999999999998 489
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--hhhHHHhhcCCc
Q 011451 83 KGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (485)
Q Consensus 83 ~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~ 142 (485)
.+++.+|.+|.. .+++++|+.+|+++++.. ++.++..++.++..-. ..++++|+..++
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 174 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYD 174 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999999999 999999999999999975 7888999999886511 334778887777
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-10 Score=96.93 Aligned_cols=97 Identities=25% Similarity=0.345 Sum_probs=91.1
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011451 44 NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (485)
Q Consensus 44 ~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (485)
.|....++..+|.++...|++++|+..++++++.+|++..+++.+|.++..+|++++|+..++++++..|+++.++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHhhcCCc
Q 011451 124 ECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 124 ~~~~~~~~~~~~~A~~~~~ 142 (485)
.++...++ +++|+..++
T Consensus 92 ~~~~~~~~--~~~A~~~~~ 108 (133)
T 2lni_A 92 AALEAMKD--YTKAMDVYQ 108 (133)
T ss_dssp HHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHhh--HHHHHHHHH
Confidence 99976665 788888887
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.15 E-value=3.4e-10 Score=91.56 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011451 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
.+..+..+|.++...|++++|+..+++++..+|+++.++..+|.++..+|++++|+..++++++..|+++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 127 KAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 127 ~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
...++ +++|...++ ++++..|..
T Consensus 83 ~~~~~--~~~A~~~~~------------~~~~~~~~~ 105 (118)
T 1elw_A 83 EFLNR--FEEAKRTYE------------EGLKHEANN 105 (118)
T ss_dssp HHTTC--HHHHHHHHH------------HHHTTCTTC
T ss_pred HHHhh--HHHHHHHHH------------HHHHcCCCC
Confidence 76665 788888777 666666543
No 156
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.14 E-value=4e-10 Score=89.96 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=67.2
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 011451 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND--PDAAQ 120 (485)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~ 120 (485)
.+|+++.+++.+|.++...|++++|+..++++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.+ .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4688899999999999999999999999999999999999999999999999999999999999999887643 33344
Q ss_pred HHHHHH
Q 011451 121 KVKECE 126 (485)
Q Consensus 121 ~l~~~~ 126 (485)
.+...+
T Consensus 82 ~l~~~l 87 (100)
T 3ma5_A 82 ELQDAK 87 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 157
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.13 E-value=8.6e-11 Score=107.65 Aligned_cols=126 Identities=17% Similarity=0.019 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE----EYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g----~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
.++.+++.+|..+...+++++|++.|+++++. .++.+++++|.+|.. + ++++|+.+|++|.+ +.++.+++.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 56789999999999999999999999999875 689999999999998 7 89999999999965 578999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHh--hhhHHHhhcCCc
Q 011451 88 RGAAYLA----MGKFKEALKDFQQVKKLSP--NDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~~~~----~g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~ 142 (485)
+|.+|.. .+++++|+.+|+++.+..| +++.++..++.++..-. ..++++|+.+++
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999998 8999999999999999887 35899999999985511 334677777777
No 158
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.13 E-value=2.6e-10 Score=114.41 Aligned_cols=122 Identities=19% Similarity=0.186 Sum_probs=110.9
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CC
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA----VYYANRAFAHTKLEEYGSAIQDASKAIEI------DP 79 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~----~~~~~lg~~~~~~g~~~eAl~~~~~al~~------~p 79 (485)
.+..+..+..+|..++..|++++|++.|+++++.+|++. .++..+|.++...|++++|+.++++++.+ +|
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 367788899999999999999999999999999999987 58999999999999999999999999998 57
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhh
Q 011451 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~ 131 (485)
....++..+|.+|..+|++++|+..|++++++ .|....++..++.++...++
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 77889999999999999999999999999998 45556788899999866665
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.13 E-value=3.1e-10 Score=109.11 Aligned_cols=128 Identities=12% Similarity=0.008 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCh-
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAI---EIDPRYP- 82 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al---~~~p~~~- 82 (485)
....++.+|..+...|++++|++.|+++++..+.. ..++.++|.+|...|++++|+.++++|+ +..|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~ 193 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence 34556677788888888888888888888765443 5678888888888888888888888888 4455532
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhhhHHHh-hcCCc
Q 011451 83 ---KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEA-IAVPE 142 (485)
Q Consensus 83 ---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~A-~~~~~ 142 (485)
.+++++|.+|..+|++++|+.++++++++.++ -..++..+|.++..+++ +++| ..+++
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~Ai~~~~~ 261 (293)
T 2qfc_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY--EEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC--CHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHH
Confidence 57788888888888888888888888876532 15667777777766655 4566 44444
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.13 E-value=6.1e-10 Score=108.50 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=123.2
Q ss_pred CchhHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCChHHH
Q 011451 9 SSVSRAEELKALANEAFRAK--KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE-YGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~-~~eAl~~~~~al~~~p~~~~~~ 85 (485)
.+|+...+|...+.++...+ +++++++.+.++++.+|.+..+|..++.+....|. +++++++++++++.+|.+..+|
T Consensus 103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW 182 (331)
T 3dss_A 103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSW 182 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 46888999999999999998 49999999999999999999999999999999998 6999999999999999999999
Q ss_pred HHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hh--------hhHHHhhcCCc
Q 011451 86 YRRGAAYLAM--------------GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV-KK--------LKFEEAIAVPE 142 (485)
Q Consensus 86 ~~lg~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~--------~~~~~A~~~~~ 142 (485)
..++.++..+ +.++++++++.+++..+|+|..+|+++..++... +. ..+++++..+.
T Consensus 183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 9999999988 5689999999999999999999998776655333 21 12444444444
Q ss_pred cccccccccccccccccCCCC
Q 011451 143 SERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 143 ~~~~~~a~~~~~~~l~~~~~~ 163 (485)
+.++++|+.
T Consensus 263 ------------elle~~pd~ 271 (331)
T 3dss_A 263 ------------ELQELEPEN 271 (331)
T ss_dssp ------------HHHHHCTTC
T ss_pred ------------HHHhhCccc
Confidence 777787764
No 161
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.12 E-value=8.4e-11 Score=101.33 Aligned_cols=93 Identities=18% Similarity=0.324 Sum_probs=84.5
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 011451 59 TKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKF----------KEALKDFQQVKKLSPNDPDAAQKVKECEKA 128 (485)
Q Consensus 59 ~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 128 (485)
.+.+.+++|+..++++++++|+++.+|+++|.++..++++ ++|+..|++|++++|++.++++.+|.++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999876 599999999999999999999999999988
Q ss_pred Hhh---------hhHHHhhcCCccccccccccccccccccCCCC
Q 011451 129 VKK---------LKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 129 ~~~---------~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
++. +++++|+.+++ ++++++|++
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~------------kAl~l~P~~ 124 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQ------------QAVDEQPDN 124 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH------------HHHHHCTTC
T ss_pred hcccCcchhhhhccHHHHHHHHH------------HHHHhCCCC
Confidence 763 46888888888 999999875
No 162
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.1e-09 Score=115.29 Aligned_cols=146 Identities=10% Similarity=0.049 Sum_probs=122.5
Q ss_pred hhHHHHHHHH---HHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHH
Q 011451 11 VSRAEELKAL---ANEAFRAKKY-SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE----------YGSAIQDASKAIE 76 (485)
Q Consensus 11 ~~~a~~~~~l---g~~~~~~g~~-~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eAl~~~~~al~ 76 (485)
..++..+... .....+.+++ ++|++.++++++.+|++..+|..++.++..+++ +++|++.++++++
T Consensus 22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~ 101 (567)
T 1dce_A 22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 101 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH
Confidence 4444444333 3334455655 678999999999999999999999999999998 9999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccc
Q 011451 77 IDPRYPKGYYRRGAAYLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDY 154 (485)
Q Consensus 77 ~~p~~~~~~~~lg~~~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~ 154 (485)
.+|++..+|..++.++..++ ++++|++.++++++.+|.+..+|.+.+.+...++. .++++++++.
T Consensus 102 ~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~-~~~~el~~~~------------ 168 (567)
T 1dce_A 102 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV-APAEELAFTD------------ 168 (567)
T ss_dssp HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-CHHHHHHHHH------------
T ss_pred hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-ChHHHHHHHH------------
Confidence 99999999999999999999 77999999999999999999999999999987772 2577777776
Q ss_pred cccccCCCCCCcccc
Q 011451 155 QSIEVEPQYSGARIE 169 (485)
Q Consensus 155 ~~l~~~~~~~~~~l~ 169 (485)
++++.+|....++..
T Consensus 169 ~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 169 SLITRNFSNYSSWHY 183 (567)
T ss_dssp TTTTTTCCCHHHHHH
T ss_pred HHHHHCCCCccHHHH
Confidence 777777776666443
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.4e-10 Score=95.94 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=97.4
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 011451 43 LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAA 119 (485)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 119 (485)
.+|.+...+..+|.++...|++++|+..|+++++.+|++ ..++..+|.++..+|++++|+..++++++..|+++.++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 467889999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 120 QKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 120 ~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
..++.++...++ +++|+..++ +++++.|..
T Consensus 103 ~~~a~~~~~~~~--~~~A~~~~~------------~al~~~p~~ 132 (148)
T 2dba_A 103 YRRSQALEKLGR--LDQAVLDLQ------------RCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHTC--HHHHHHHHH------------HHHHHCSSC
T ss_pred HHHHHHHHHcCC--HHHHHHHHH------------HHHHcCCCc
Confidence 999999977666 788888887 677666644
No 164
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.11 E-value=1.1e-10 Score=116.62 Aligned_cols=124 Identities=14% Similarity=0.198 Sum_probs=106.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hH
Q 011451 17 LKALANEAFRAKKYSQAIDLYSQAIEL------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-------PK 83 (485)
Q Consensus 17 ~~~lg~~~~~~g~~~~A~~~y~~al~~------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-------~~ 83 (485)
++.+|..++..|++++|++.|++|+++ .+..+.++..+|.++...|++++|+.++++|+++.+.. ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 445999999999999999999999997 22356899999999999999999999999999985443 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++..+|.+|..+|++++|+.+|++++++.+... .++..+|.++...++ +++|+.+++
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~ 248 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFK 248 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 899999999999999999999999999866443 478889999866665 788888887
No 165
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.11 E-value=2.7e-09 Score=102.47 Aligned_cols=131 Identities=12% Similarity=0.100 Sum_probs=111.4
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-- 81 (485)
.++....+...+..++..|++++|++.+.++++..+... ..+..+|.++...|++++|+.++++|+...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 355667788899999999999999999999999888754 346678999999999999999999999876543
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVK---KLSPNDP----DAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..++..+|.+|..+|++++|+.+|++++ +..|++. .++.++|.++...++ +++|+.+++
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~Al~~~~ 220 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVN 220 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh--HHHHHHHHH
Confidence 5689999999999999999999999999 5566654 578889998866655 799998888
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.11 E-value=2.7e-10 Score=93.90 Aligned_cols=99 Identities=24% Similarity=0.333 Sum_probs=91.3
Q ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011451 42 ELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (485)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (485)
+.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++..+|++++|+..++++++..|+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHhhcCCc
Q 011451 122 VKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 122 l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++.++...++ +++|+..++
T Consensus 86 ~~~~~~~~~~--~~~A~~~~~ 104 (131)
T 2vyi_A 86 MGLALSSLNK--HVEAVAYYK 104 (131)
T ss_dssp HHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhCC--HHHHHHHHH
Confidence 9999976665 788888877
No 167
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.10 E-value=1.9e-10 Score=114.71 Aligned_cols=133 Identities=15% Similarity=0.119 Sum_probs=115.5
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ-------NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~-------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~ 80 (485)
...+..+.+++.+|.++...|++++|+..+++|+++.+. .+.++.++|.++...|++++|++++++|+++.+.
T Consensus 135 ~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 445778999999999999999999999999999987543 2567889999999999999999999999987432
Q ss_pred ------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 81 ------YPKGYYRRGAAYLAMGKFKEALKDFQQVKK-----LSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 81 ------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
...++.++|.+|..+|++++|+.+|+++++ .+|..+.++..++.++...++ +++|+.+++
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 285 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ--TQKAFQFIE 285 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 246889999999999999999999999999 677778889999999976665 788888877
No 168
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.10 E-value=7.4e-10 Score=90.40 Aligned_cols=98 Identities=29% Similarity=0.447 Sum_probs=88.1
Q ss_pred hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011451 43 LNSQN-AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (485)
Q Consensus 43 ~~p~~-~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (485)
.+|.. ..++..+|.++...|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|+++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35655 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHhhcCCc
Q 011451 122 VKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 122 l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++.++...++ +++|+..++
T Consensus 83 la~~~~~~~~--~~~A~~~~~ 101 (125)
T 1na0_A 83 LGNAYYKQGD--YDEAIEYYQ 101 (125)
T ss_dssp HHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHhcC--HHHHHHHHH
Confidence 9999966665 788888777
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.10 E-value=2.6e-10 Score=102.34 Aligned_cols=130 Identities=11% Similarity=0.068 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC-
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE------LNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---DPR- 80 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~------~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~---~p~- 80 (485)
...+.++..+|..+...|++++|++.++++++ ..+....++.++|.++...|++++|+.++++++.+ .++
T Consensus 23 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 102 (203)
T 3gw4_A 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED 102 (203)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence 36788999999999999999999999999999 44556788999999999999999999999999998 443
Q ss_pred ---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 81 ---YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--NDP----DAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 81 ---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~----~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
...++..+|.++..+|++++|+..+++++++.+ .++ .++..++.++...++ +++|...++
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 171 (203)
T 3gw4_A 103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN--LLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC--HHHHHHHHH
Confidence 356789999999999999999999999997643 222 234677777755554 677776666
No 170
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.10 E-value=1.2e-10 Score=112.14 Aligned_cols=127 Identities=11% Similarity=-0.012 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCC
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRY 81 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~-------p~~ 81 (485)
..+..+|..+...+++++|++.|++|+++.+.. ..++.++|.+|..+|++++|+.+|++|++.. +..
T Consensus 116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (293)
T 3u3w_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 345568999999999999999999999965432 3478999999999999999999999999531 223
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..+++++|.+|..+|++++|+.++++++++.++. ..++..+|.++..+++. +++|+..++
T Consensus 196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~ 261 (293)
T 3u3w_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE-EAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHH
Confidence 4588999999999999999999999999986544 67889999999777742 466766666
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.09 E-value=3.9e-10 Score=93.55 Aligned_cols=92 Identities=23% Similarity=0.193 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 011451 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP---KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND---PDAAQKV 122 (485)
Q Consensus 49 ~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~~~~~~l 122 (485)
.+++.+|.++...|++++|+..+++++..+|+++ .+++.+|.++..+|++++|+..|+++++..|++ +.++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999998 799999999999999999999999999999999 8889999
Q ss_pred HHHHHHHhhhhHHHhhcCCc
Q 011451 123 KECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 123 ~~~~~~~~~~~~~~A~~~~~ 142 (485)
+.++...++ +++|+..++
T Consensus 83 a~~~~~~g~--~~~A~~~~~ 100 (129)
T 2xev_A 83 GLSQYGEGK--NTEAQQTLQ 100 (129)
T ss_dssp HHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHcCC--HHHHHHHHH
Confidence 999976665 788888887
No 172
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.07 E-value=7e-10 Score=91.03 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=75.3
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|+.+.++..+|.++...|++++|++.|+++++.+|+++.++.++|.++..+|++++|+..+++++..+|+++.......
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999987654433
No 173
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.07 E-value=3.3e-10 Score=110.97 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=95.2
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
-.++-.+++........+.+..++|++.++++|.++|++..+|+.++.++..++ .++++++.+++++..+|++..+|..
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 345555555555555555566677888888888888888888888888888887 4888888888888888888888888
Q ss_pred HHHHHHHc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011451 88 RGAAYLAM-G-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 88 lg~~~~~~-g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
++.++..+ + +++++++.+.++++.+|.|..+|.+.+.+...++..
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~ 175 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL 175 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 88888877 6 778888888888888888888888888777766653
No 174
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.06 E-value=1.6e-09 Score=104.75 Aligned_cols=123 Identities=9% Similarity=0.069 Sum_probs=115.9
Q ss_pred CchhHHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCC
Q 011451 9 SSVSRAEELKALANEA----FRA---KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYG--SAIQDASKAIEIDP 79 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~----~~~---g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~--eAl~~~~~al~~~p 79 (485)
.+|+...+|...+.++ ... ++++++++.++++++.+|.+..+|..++.++...+.++ ++++.++++++.+|
T Consensus 98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 3677888999999999 666 78999999999999999999999999999999999999 99999999999999
Q ss_pred CChHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011451 80 RYPKGYYRRGAAYLAMGK------FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~------~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
.|..+|..++.+...+++ ++++++++++++..+|+|..+|..++.++...++
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 999999999999999998 9999999999999999999999999999877765
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.06 E-value=3.8e-10 Score=108.11 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011451 45 SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKE 124 (485)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~ 124 (485)
|.++.++..+|.++...|++++|+..|++++..+|+++.++.++|.+|..+|++++|+..|+++++++|+++.++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 125 CEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 125 ~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
++..+++ +++|+..++ ++++++|+.
T Consensus 81 ~~~~~g~--~~~A~~~~~------------~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMES--YDEAIANLQ------------RAYSLAKEQ 105 (281)
T ss_dssp HHHHTTC--HHHHHHHHH------------HHHHHHHHT
T ss_pred HHHHcCC--HHHHHHHHH------------HHHHhCccc
Confidence 9977665 788888888 677776654
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.06 E-value=1.4e-10 Score=119.76 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=96.4
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRG 89 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg 89 (485)
.|+.+.++..+|.++..+|++++|++.|++|++++|+++.++.++|.+|..+|++++|++.++++++++|++..++..++
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 115 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--HHHcCCHHHHHHHHH-----------HHHHhCCCCHH
Q 011451 90 AA--YLAMGKFKEALKDFQ-----------QVKKLSPNDPD 117 (485)
Q Consensus 90 ~~--~~~~g~~~eA~~~~~-----------~al~~~p~~~~ 117 (485)
.+ +..+|++++|++.++ ++++++|+...
T Consensus 116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 98 889999999999999 88887776533
No 177
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.05 E-value=4.3e-10 Score=111.98 Aligned_cols=132 Identities=14% Similarity=0.205 Sum_probs=115.4
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY- 81 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~- 81 (485)
..+..+.++..+|.++...|++++|++.+++++++.+... .++.++|.++...|++++|+.++++++.+.|..
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 3566778999999999999999999999999999876543 489999999999999999999999999987765
Q ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 82 -----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 -----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..++..+|.++..+|++++|+..|++++++.+.. ..++..++.++...++ +++|+..++
T Consensus 262 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 331 (406)
T 3sf4_A 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 331 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 7789999999999999999999999999986644 5578888888876665 788888777
No 178
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.05 E-value=1.1e-09 Score=105.50 Aligned_cols=120 Identities=16% Similarity=0.211 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRY 81 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~lg~~~~~~g~~~eAl~~~~~al~~------~p~~ 81 (485)
..+..++..|..++..|++++|+..|+++++.+|.+ ..++..+|.++...|++++|+..+++++.+ .|..
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 346788999999999999999999999999999998 478889999999999999999999999987 4456
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhh
Q 011451 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDP------DAAQKVKECEKAVKK 131 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~ 131 (485)
..++..+|.++..+|++++|+..+++++++.+... .++..++.++...++
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 78899999999999999999999999999876543 377788888866655
No 179
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.05 E-value=2.2e-09 Score=112.18 Aligned_cols=177 Identities=12% Similarity=0.021 Sum_probs=137.7
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~-~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
.|+.+..|..+|..+...|++++|.+.|+++++..|.++ .+|..+|.++.+.|++++|.+.|++|++..|.....+...
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~ 396 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 396 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHH
Confidence 577889999999999999999999999999999999985 6999999999999999999999999999999888887776
Q ss_pred HHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCcc
Q 011451 89 GAA-YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGAR 167 (485)
Q Consensus 89 g~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 167 (485)
+.+ +...|++++|...|+++++..|+++.+|..++..+...+ +.++|..+++ +++...|....
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g--~~~~Ar~~~~------------~al~~~~~~~~-- 460 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN--EDNNTRVLFE------------RVLTSGSLPPE-- 460 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT--CHHHHHHHHH------------HHHHSCCSCGG--
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC--CHhhHHHHHH------------HHHhccCCCHH--
Confidence 655 446999999999999999999999999999998875544 4688888887 66655432211
Q ss_pred ccCCcccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhc
Q 011451 168 IEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRA 209 (485)
Q Consensus 168 l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ 209 (485)
.........+......+ +.+.+..+...+.+.+..
T Consensus 461 -----~~~~lw~~~~~~e~~~G--~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 -----KSGEIWARFLAFESNIG--DLASILKVEKRRFTAFRE 495 (530)
T ss_dssp -----GCHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHHTHH
T ss_pred -----HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCch
Confidence 01112223333322222 334566777777777764
No 180
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.04 E-value=6e-10 Score=88.92 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=72.7
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--PKGYY 86 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~--~~~~~ 86 (485)
.+|+.+.+++.+|.+++..|++++|++.|+++++++|+++.+|..+|.+|..+|++++|++.+++++++.|.. .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999999987653 34444
Q ss_pred HHHHHHHH
Q 011451 87 RRGAAYLA 94 (485)
Q Consensus 87 ~lg~~~~~ 94 (485)
.+..++..
T Consensus 82 ~l~~~l~~ 89 (100)
T 3ma5_A 82 ELQDAKLK 89 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 181
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.04 E-value=1.1e-08 Score=100.05 Aligned_cols=90 Identities=9% Similarity=0.028 Sum_probs=74.9
Q ss_pred chhHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhCCCChHHHH
Q 011451 10 SVSRAEELKALANEAFRAK-KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL-E-EYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~-g-~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
+|+...+|...+.++...+ +++++++.++++|..+|++..+|..++.++... + +++++++.+.++++.+|.+..+|.
T Consensus 84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 5677788888888888888 488888888888888888888888888888887 7 788888888888888888888888
Q ss_pred HHHHHHHHcCCHH
Q 011451 87 RRGAAYLAMGKFK 99 (485)
Q Consensus 87 ~lg~~~~~~g~~~ 99 (485)
.++.+...+++++
T Consensus 164 ~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 164 YLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccc
Confidence 8888888777554
No 182
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.03 E-value=2.9e-10 Score=109.55 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=112.9
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-- 81 (485)
.+..+..+..+|.++...|++++|++.++++++..+.. ..++..+|.++...|++++|+..+++++.+.+..
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc
Confidence 45667889999999999999999999999999886543 3489999999999999999999999999987665
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..++..+|.++..+|++++|+..++++++..+.. ..++..++.++...++ +++|..+++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 327 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence 7789999999999999999999999999986543 3477788888876665 688887777
No 183
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=3.3e-10 Score=109.84 Aligned_cols=128 Identities=24% Similarity=0.203 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY---- 81 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~---- 81 (485)
+-+..+...|..|...|++++|++.|.+++++.+.. ..++.++|.+|..+|++++|+.+|++|+++.+..
T Consensus 34 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~ 113 (307)
T 2ifu_A 34 SAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 334556666789999999999999999999986543 5689999999999999999999999999985432
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 82 --PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 --~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..++.++|.+|.. |++++|+.+|++|+++.|.. ..++..++.++..+++ +++|+..++
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~ 179 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK--FDEAAASLQ 179 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 4688899999999 99999999999999987754 4577788888866655 788888887
No 184
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.03 E-value=8.1e-10 Score=109.97 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=106.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCC
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPR 80 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~lg~~~~~~g~~~eAl~~~~~al~~------~p~ 80 (485)
...+..+..+|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.++++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 4457789999999999999999999999999999998 468999999999999999999999999987 344
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhh
Q 011451 81 YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKK 131 (485)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~ 131 (485)
...++..+|.++..+|++++|+..+++++++.|.. ..++..++.++...++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 57789999999999999999999999999987654 3478888888866655
No 185
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.02 E-value=2.5e-10 Score=114.48 Aligned_cols=131 Identities=14% Similarity=0.219 Sum_probs=113.1
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY-- 81 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~-- 81 (485)
.+..+.++..+|.++...|++++|++.|++++++.+... .++.++|.++...|++++|+.++++++.+.+..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 456678999999999999999999999999999876533 389999999999999999999999999987754
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND------PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
..++..+|.++..+|++++|+.+|++++++.++. ..++..++.++...++ +++|+.+++
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 367 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG--HERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc--HHHHHHHHH
Confidence 6789999999999999999999999999986543 3477788888866665 678877777
No 186
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.02 E-value=7.3e-10 Score=101.39 Aligned_cols=127 Identities=17% Similarity=0.045 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC--CC
Q 011451 12 SRAEELKALANEAFRAK----KYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDP--RY 81 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g----~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~~al~~~p--~~ 81 (485)
..+.+++.+|..|.. + ++++|++.|+++++ +.++.+++++|.+|.. .+++++|+.+|++|++..| ++
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 124 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA 124 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence 457889999999998 7 99999999999965 6899999999999988 8899999999999999988 35
Q ss_pred hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh----hhhHHHhhcCCc
Q 011451 82 PKGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK----KLKFEEAIAVPE 142 (485)
Q Consensus 82 ~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~~~A~~~~~ 142 (485)
+.+++.+|.+|.. .+++++|+.+|+++.+. |.++.+...++.++..-. ..++++|+.+++
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 8999999999999 89999999999999998 788889999999985432 225777877776
No 187
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.01 E-value=6.9e-10 Score=91.53 Aligned_cols=95 Identities=16% Similarity=0.237 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 011451 46 QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-------PDA 118 (485)
Q Consensus 46 ~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~~~ 118 (485)
..+..+..+|.++...|++++|+..+++++..+|.++.++..+|.++..+|++++|+..|++++...|++ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467899999999999999999999999999999999999999999999999999999999999998877 888
Q ss_pred HHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 119 AQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 119 ~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+..++.++...++ +++|+..++
T Consensus 82 ~~~la~~~~~~~~--~~~A~~~~~ 103 (131)
T 1elr_A 82 YARIGNSYFKEEK--YKDAIHFYN 103 (131)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHhcc--HHHHHHHHH
Confidence 9999999866655 788888877
No 188
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=3e-09 Score=102.14 Aligned_cols=182 Identities=11% Similarity=0.075 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAV------YYANRAFAHTKLEEYGSAIQDASKAIEIDPRY--- 81 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~------~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~--- 81 (485)
.+....+...+..++..|++++|++.++++++..+..+. .+..+|.++...+++++|+.++++|+.+.+..
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~ 151 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence 455666777889999999999999999999998877655 34468999999999999999999999975543
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHHhhhhHHHhhcCCcccccccccc
Q 011451 82 ---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS---PND----PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADS 151 (485)
Q Consensus 82 ---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---p~~----~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~ 151 (485)
..++..+|.+|..+|++++|+.+|+++++.. |.+ ..++.+++.++...++ +++|+.+++
T Consensus 152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--y~~A~~~~~--------- 220 (293)
T 3u3w_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--YEESLYQVN--------- 220 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--HHHHHHHHH---------
Confidence 3378999999999999999999999999632 122 3477888988866665 789988888
Q ss_pred ccccccccCCCCCCccccCCcccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCC
Q 011451 152 IDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPS 212 (485)
Q Consensus 152 ~~~~~l~~~~~~~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~ 212 (485)
+++++.+....... .......+.......+. ..+.+...+.++..++....+
T Consensus 221 ---~al~~~~~~~~~~~-----~~~~~~~lg~~~~~~g~-~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 221 ---KAIEISCRINSMAL-----IGQLYYQRGECLRKLEY-EEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp ---HHHHHHHHTTBCTT-----HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHcCcHHH-----HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHhCC
Confidence 56655433322111 01111122222222221 124577778888777765543
No 189
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.97 E-value=2.7e-09 Score=84.34 Aligned_cols=71 Identities=21% Similarity=0.413 Sum_probs=67.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 011451 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQK 121 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 121 (485)
.+.+|.++...|++++|+..++++++.+|+++. +++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 357899999999999999999999999999999 99999999999999999999999999999999998743
No 190
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.95 E-value=7.1e-10 Score=105.24 Aligned_cols=126 Identities=14% Similarity=0.089 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C-hHHHHHHHHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-Y-PKGYYRRGAA 91 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~-~-~~~~~~lg~~ 91 (485)
.+....+|..+...|+|++|.+.|..++...|.+. +.+.+|.++++.+++++|+..+++++...+. . ..+++.+|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 45566788888999999999999998888888888 8888999999999999999999877664211 1 3578889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 92 YLAMGKFKEALKDFQQVKKLS--PN-DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+..+|++++|+..|++++... |. .+++++.++.++..+|+ .++|...++
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr--~deA~~~l~ 232 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN--ESAAVALLE 232 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 999999999999999988543 44 55688888888877777 578888777
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.95 E-value=6.2e-10 Score=109.70 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-H
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY-L 93 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~-~ 93 (485)
.+++++|.++...|++++|+..|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.+. .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999999999999999999999999884 4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 011451 94 AMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 94 ~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
..+..+++...|++++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788899999999999998764
No 192
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.94 E-value=7.4e-09 Score=108.16 Aligned_cols=141 Identities=13% Similarity=0.024 Sum_probs=119.0
Q ss_pred chhHHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011451 10 SVSRAEELKALANEAFR-------AKKYS-------QAIDLYSQAIE-LNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~-------~g~~~-------~A~~~y~~al~-~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~a 74 (485)
.|..++.|+.+|..+.. .|+++ +|++.|++|++ .+|++..+|..+|..+...|++++|...|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 35678899999999986 79987 99999999997 89999999999999999999999999999999
Q ss_pred HHhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCcccccccccccc
Q 011451 75 IEIDPRYP-KGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSID 153 (485)
Q Consensus 75 l~~~p~~~-~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~ 153 (485)
++.+|.++ .+|..+|.++.+.|++++|...|++|++..|.+...+...+.+... ..++.++|...++
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~-~~~~~~~A~~~~e----------- 415 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY-CSKDKSVAFKIFE----------- 415 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH-HTCCHHHHHHHHH-----------
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH-HcCChhHHHHHHH-----------
Confidence 99999985 6999999999999999999999999999988877766554443211 2334677777777
Q ss_pred ccccccCCCC
Q 011451 154 YQSIEVEPQY 163 (485)
Q Consensus 154 ~~~l~~~~~~ 163 (485)
++++..|+.
T Consensus 416 -~al~~~p~~ 424 (530)
T 2ooe_A 416 -LGLKKYGDI 424 (530)
T ss_dssp -HHHHHHTTC
T ss_pred -HHHHHCCCC
Confidence 777766643
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.94 E-value=4.4e-09 Score=104.88 Aligned_cols=96 Identities=20% Similarity=0.164 Sum_probs=91.7
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
..+..+.++.++|.+++.+|++++|++.|++|++++|+++.+++.+|.+|..+|++++|+.+|++|++++|++..++..+
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l 347 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q 011451 89 GAAYLAMGKFKEALKD 104 (485)
Q Consensus 89 g~~~~~~g~~~eA~~~ 104 (485)
+.++..++++++|.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888764
No 194
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.92 E-value=1.8e-09 Score=107.58 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=95.5
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS------QNAVYYANRAFAHTKLEEYGSAIQDASKAIE-----ID 78 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p------~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~-----~~ 78 (485)
.+..+.++..+|.++...|++++|++.|++|+++.+ ..+.++.++|.+|..+|++++|+.++++++. .+
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 346788999999999999999999999999999743 2356899999999999999999999999999 78
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011451 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 114 (485)
|..+.++..+|.++..+|++++|+..+++++++.+.
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998654
No 195
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=9.9e-09 Score=97.34 Aligned_cols=113 Identities=14% Similarity=0.060 Sum_probs=97.7
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-ChH
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN--AVYYANRAFAHTKLEEYGSAIQDASKAIEID--PR-YPK 83 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~--~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~--p~-~~~ 83 (485)
..|... ..+.+|..+++.++|++|+..++++++..+.. ..+++.+|.++..+|++++|+.+|++++... |. ...
T Consensus 131 ~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~d 209 (282)
T 4f3v_A 131 AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARA 209 (282)
T ss_dssp TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHH
T ss_pred cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHH
Confidence 456777 99999999999999999999999887653221 4589999999999999999999999998654 55 667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 011451 84 GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVK 123 (485)
Q Consensus 84 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 123 (485)
+++.+|.++..+|+.++|...|++++..+|+ +.++..|.
T Consensus 210 a~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 210 IAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 9999999999999999999999999999999 77665543
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.89 E-value=1.1e-08 Score=87.34 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---- 80 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~---- 80 (485)
...+.++..+|.++...|++++|++.++++++..+.. ..++.++|.++...|++++|+.++++++...+.
T Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 46 AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence 4455789999999999999999999999999986543 678999999999999999999999999987432
Q ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011451 81 --YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 81 --~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 114 (485)
...++..+|.++..+|++++|+..+++++++..+
T Consensus 126 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 126 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2567899999999999999999999999987554
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.88 E-value=8.5e-09 Score=83.96 Aligned_cols=88 Identities=7% Similarity=-0.017 Sum_probs=75.8
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR--YPKGYY 86 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~--~~~~~~ 86 (485)
..|+.+.+++.+|.++...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..|+++++++|. +..+..
T Consensus 14 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (115)
T 2kat_A 14 QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93 (115)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999999999885 344444
Q ss_pred HHHHHHHHcC
Q 011451 87 RRGAAYLAMG 96 (485)
Q Consensus 87 ~lg~~~~~~g 96 (485)
.+...+..++
T Consensus 94 ~l~~~l~~l~ 103 (115)
T 2kat_A 94 ELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5544444433
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.88 E-value=1.1e-08 Score=105.46 Aligned_cols=126 Identities=12% Similarity=0.133 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C---
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----D--- 78 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~-----~--- 78 (485)
......+..+..+|+|++|+..|+++|++ .|+ -+..+.++|.+|..+|+|++|+.++++++++ .
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33445666788999999999999999986 233 4677999999999999999999999999976 3
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDA---AQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~---~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|+-+..+.+||.+|..+|++++|...|++|+++ .|++|.. ...++.++..+++ +.+|...+.
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~--~~~ae~~~~ 459 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM--FRQNEFMYH 459 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 444667999999999999999999999999985 5777654 4566666655555 566666655
No 199
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=98.86 E-value=5.5e-08 Score=87.30 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=49.3
Q ss_pred CceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcccc
Q 011451 222 KHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (485)
Q Consensus 222 ~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 296 (485)
.++.+++|+||+...+.++++.... ...+.++++||++|. +++..|..+ +..++.++||||....
T Consensus 26 m~i~~iSD~Hg~~~~l~~~l~~~~~-~~~D~ii~~GDl~~~-----~~~~~l~~l----~~~~~~V~GNhD~~~~ 90 (190)
T 1s3l_A 26 MKIGIMSDTHDHLPNIRKAIEIFND-ENVETVIHCGDFVSL-----FVIKEFENL----NANIIATYGNNDGERC 90 (190)
T ss_dssp CEEEEECCCTTCHHHHHHHHHHHHH-SCCSEEEECSCCCST-----HHHHHGGGC----SSEEEEECCTTCCCHH
T ss_pred eEEEEEeeCCCCHHHHHHHHHHHhh-cCCCEEEECCCCCCH-----HHHHHHHhc----CCCEEEEeCCCcchHH
Confidence 3589999999999999998886532 234579999999984 555555433 4579999999998654
No 200
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=3.2e-08 Score=84.25 Aligned_cols=102 Identities=11% Similarity=0.093 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHH
Q 011451 29 KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKFKEALK 103 (485)
Q Consensus 29 ~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g---~~~eAl~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eA~~ 103 (485)
..+.+.+.|.+.++.++.+..+.+++|.++.+.+ +.++|+..++..++.+ | +..+++|++|..++++|+|++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567788899999989999999999999999988 6779999999999998 7 578999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 011451 104 DFQQVKKLSPNDPDAAQKVKECEKAVK 130 (485)
Q Consensus 104 ~~~~al~~~p~~~~~~~~l~~~~~~~~ 130 (485)
+++++++.+|++..+......+...+.
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887776664443
No 201
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.78 E-value=4.7e-08 Score=96.73 Aligned_cols=130 Identities=14% Similarity=-0.018 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP--- 82 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~-----~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~--- 82 (485)
.-.+..+..+|..+...|++++|++.+++++...|... .++..+|.++...|++++|+..+++++.+.|...
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 44567888999999999999999999999999887653 3678999999999999999999999998866542
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 83 ---KGYYRRGAAYLAMGKFKEALKDFQQVKKLSP--------NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 83 ---~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.++..+|.++..+|++++|+..+++++++.+ ....++..++.++...++ +++|...++
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 159 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEASAR 159 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 3477899999999999999999999998753 234456678888755554 788888777
No 202
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.77 E-value=3e-08 Score=88.67 Aligned_cols=107 Identities=11% Similarity=0.090 Sum_probs=92.2
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL---NSQ----NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR 80 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~---~p~----~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~ 80 (485)
...+..+.++..+|.++...|++++|++.+++++++ .++ ...++.++|.++...|++++|+.++++++.+.+.
T Consensus 60 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 60 GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 356778899999999999999999999999999998 443 3567999999999999999999999999976432
Q ss_pred --C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 011451 81 --Y----PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPN 114 (485)
Q Consensus 81 --~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 114 (485)
+ ..++..+|.++..+|++++|...+++++++...
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 2 345689999999999999999999999987543
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.76 E-value=7.4e-08 Score=75.64 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011451 44 NSQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 44 ~p~~~~~~~~lg~~~~~~g~---~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
+|+++.++..+|.+++..++ .++|...+++|++++|+++.+++.+|..++..|+|++|+.+++++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 57888888888888876655 688888888888888888888888888888888888888888888888887544
No 204
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.74 E-value=5.9e-08 Score=96.01 Aligned_cols=129 Identities=13% Similarity=0.057 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN------AVYYANRAFAHTKLEEYGSAIQDASKAIEID------- 78 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~------- 78 (485)
..+.++..+|..+...|++++|++.+++++++.|.. ..++.++|.++...|++++|+..+++++.+.
T Consensus 51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 130 (373)
T 1hz4_A 51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 130 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 355678999999999999999999999999986543 2447889999999999999999999999875
Q ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 79 -PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND-----PDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 79 -p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|....++..+|.++..+|++++|...+++++...+.. ..++..++.++...++ +++|...++
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~ 198 (373)
T 1hz4_A 131 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD--LDNARSQLN 198 (373)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 3345678889999999999999999999999998753 3456777877755555 788887776
No 205
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.70 E-value=8.3e-08 Score=99.07 Aligned_cols=106 Identities=21% Similarity=0.100 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCChHHHH
Q 011451 15 EELKALANEAFRA-----KKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 15 ~~~~~lg~~~~~~-----g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g---~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
.+++.+|..+... +++++|++.|+++++. .++.+++++|.+|...| ++++|+.+|+++++. .++.+++
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 367 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF 367 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH
Confidence 3444455555444 4555555555555443 33445555555554433 455555555555544 3455555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011451 87 RRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 87 ~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
.+|.+|.. .+++++|+.+|+++.+. .++.++..++.++
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y 409 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 55555555 55555555555555543 2455555555554
No 206
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.69 E-value=3e-08 Score=101.61 Aligned_cols=122 Identities=14% Similarity=0.096 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCChHHHHH
Q 011451 15 EELKALANEAFRAK---KYSQAIDLYSQAIELNSQNAVYYANRAFAHTKL----EEYGSAIQDASKAIEIDPRYPKGYYR 87 (485)
Q Consensus 15 ~~~~~lg~~~~~~g---~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~----g~~~eAl~~~~~al~~~p~~~~~~~~ 87 (485)
.+++.+|..|...| ++++|++.|+++.+..|..+..++++|.+|... +++++|+.+|+++. |+++.+++.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 38899999999999 999999999999999999999999999999765 69999999999988 899999999
Q ss_pred HHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh---hhhHHHhhcCCc
Q 011451 88 RGAA-Y--LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK---KLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~-~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~~~A~~~~~ 142 (485)
+|.+ + ...+++++|+.+|+++.+. .++.++..++.++. .+ ..++++|+.+++
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9998 4 4789999999999999864 58999999999986 33 124777777777
No 207
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.68 E-value=1.9e-07 Score=85.85 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=51.6
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccc
Q 011451 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
++.+++|+|+....+.++++..... ..+.+|++||++|+|....+...++-.|+.. +..++.++||||...
T Consensus 7 ri~~iSD~H~~~~~~~~~~~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~-~~pv~~v~GNHD~~~ 77 (228)
T 1uf3_A 7 YILATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEA-HLPTAYVPGPQDAPI 77 (228)
T ss_dssp EEEEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGG-CSCEEEECCTTSCSH
T ss_pred EEEEEeeccCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEECCCCCchh
Confidence 5899999999998888877654311 2357999999999996665554455444432 345999999999864
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.66 E-value=1.5e-07 Score=95.44 Aligned_cols=100 Identities=12% Similarity=0.151 Sum_probs=83.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHH
Q 011451 21 ANEAFRAKKYSQAIDLYSQAIEL-----NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI--------DPRYPKG 84 (485)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~--------~p~~~~~ 84 (485)
.......|+|++|++.|+++|++ .|++ +..+.++|.+|..+|+|++|+.++++++++ +|+-+..
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 34444568899999999999986 3444 567889999999999999999999999976 3445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 011451 85 YYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAAQ 120 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~ 120 (485)
+.++|.+|..+|++++|+..|++|+++ .|++|....
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999999999986 577776543
No 209
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=98.65 E-value=2e-07 Score=82.54 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=74.2
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccccccccCc
Q 011451 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIYGF 302 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~~f 302 (485)
++.+++|+||+...+.++++.... ..+.++++||+.- +++. .+ . ..++.++||||....
T Consensus 8 ~i~~isD~H~~~~~~~~~~~~~~~--~~d~i~~~GD~~~------~~l~---~l--~--~~~~~v~GNhD~~~~------ 66 (176)
T 3ck2_A 8 TIIVMSDSHGDSLIVEEVRDRYVG--KVDAVFHNGDSEL------RPDS---PL--W--EGIRVVKGNMDFYAG------ 66 (176)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHTT--TSSEEEECSCCCS------CTTC---GG--G--TTEEECCCTTCCSTT------
T ss_pred EEEEEecCCCCHHHHHHHHHHhhc--CCCEEEECCCCch------HHHH---hh--h--CCeEEecCcccchhc------
Confidence 489999999999999999987653 4567999999721 2211 11 1 269999999997531
Q ss_pred hhHHHhhhcHHHHHHHHHHhccccc--ccee-CCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCcccccccCCCCCC
Q 011451 303 EGEVRSKLSETFVELFAEVFCCLPL--AHVL-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLWSDPQPL 379 (485)
Q Consensus 303 ~~e~~~~~~~~~~~~~~~~f~~lPl--~~~i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw~dp~~~ 379 (485)
+|- ...+ +.+++++||.+..+ |
T Consensus 67 ----------------------~p~~~~~~~~~~~i~~~Hg~~~~~---------------------------~------ 91 (176)
T 3ck2_A 67 ----------------------YPERLVTELGSTKIIQTHGHLFDI---------------------------N------ 91 (176)
T ss_dssp ----------------------CCSEEEEEETTEEEEEECSGGGTT---------------------------T------
T ss_pred ----------------------CCcEEEEEECCeEEEEECCCccCC---------------------------C------
Confidence 121 1122 45899999875110 0
Q ss_pred CCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeecccccc
Q 011451 380 PGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDE 419 (485)
Q Consensus 380 ~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~ 419 (485)
.+.+.+.++++..+++.+|-||+-...
T Consensus 92 -------------~~~~~l~~~~~~~~~d~vi~GHtH~~~ 118 (176)
T 3ck2_A 92 -------------FNFQKLDYWAQEEEAAICLYGHLHVPS 118 (176)
T ss_dssp -------------TCSHHHHHHHHHTTCSEEECCSSCCEE
T ss_pred -------------CCHHHHHHHHHhcCCCEEEECCcCCCC
Confidence 133567788888999999999997543
No 210
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=98.64 E-value=6.4e-08 Score=85.88 Aligned_cols=84 Identities=25% Similarity=0.298 Sum_probs=60.3
Q ss_pred ceeEecccCC--CHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcccccccc
Q 011451 223 HFTVCGDVHG--QFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSMNKIY 300 (485)
Q Consensus 223 ~~~v~GDihG--~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~~~~~ 300 (485)
++.+++|+|| +...+.++++... ...+.++++||++|+ +++..|..+. ..++.++||||...
T Consensus 24 ri~~iSD~Hg~~~~~~l~~~l~~~~--~~~D~ii~~GD~~~~-----~~~~~l~~~~----~~v~~V~GNhD~~~----- 87 (178)
T 2kkn_A 24 RFLLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDL-----DTVILLEKFS----KEFYGVHGNMDYPD----- 87 (178)
T ss_dssp EEEEECCCCBTTTTCCCCHHHHHGG--GGCSEEEESSCBSCH-----HHHHHHHHHT----SSEEECCCSSSCGG-----
T ss_pred EEEEEecccCCCCHHHHHHHHHHHh--cCCCEEEECCCCCCH-----HHHHHHHhcC----CCEEEEECCCCcHH-----
Confidence 5899999997 6666777776543 234679999999983 7777776653 35899999999753
Q ss_pred CchhHHHhhhcHHHHHHHHHHhcccccccee---CCcEEEEeCcc
Q 011451 301 GFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGL 342 (485)
Q Consensus 301 ~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i---~~~~~~vHgGi 342 (485)
|...+|....+ +.+++++||..
T Consensus 88 --------------------~~~~lp~~~~~~~~g~~i~l~HG~~ 112 (178)
T 2kkn_A 88 --------------------VKEHLPFSKVLLVEGVTIGMCHGWG 112 (178)
T ss_dssp --------------------GGGTSCSCEEEEETTEEEEECCSCC
T ss_pred --------------------HHhhCCcceEEEECCEEEEEECCCC
Confidence 23346654433 45899999864
No 211
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.64 E-value=3.8e-07 Score=94.07 Aligned_cols=126 Identities=17% Similarity=0.104 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCh
Q 011451 11 VSRAEELKALANEAFR----AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYP 82 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~~al~~~p~~~ 82 (485)
+.++++++.+|..|.. .+++++|++.|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 4467888999999998 89999999999999875 678999999999998 89999999999999875 578
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--hhhHHHhhcCCc
Q 011451 83 KGYYRRGAAYLA----MGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (485)
Q Consensus 83 ~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~ 142 (485)
.+++.+|.+|.. .+++++|+.+|+++... +++.++..++.++..-. ..++++|+..++
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 899999999998 88999999999998764 67888999998885410 234667766665
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.63 E-value=1.4e-07 Score=74.06 Aligned_cols=73 Identities=19% Similarity=0.112 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 011451 10 SVSRAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYP 82 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~---~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~ 82 (485)
.|++++.+..+|.+++..++ .++|...++++++++|+++.++..+|..+++.|+|++|+.+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57789999999999987766 79999999999999999999999999999999999999999999999999843
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.63 E-value=4.6e-07 Score=72.59 Aligned_cols=77 Identities=14% Similarity=-0.019 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 011451 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEID-------PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 120 (485)
+.-++.+|..++..++|+.|+.++++|++.. +..+.++..+|.++.++|++++|+..++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4445556666666666666666666666542 234556667777777777777777777777777777766666
Q ss_pred HHHH
Q 011451 121 KVKE 124 (485)
Q Consensus 121 ~l~~ 124 (485)
+++.
T Consensus 85 n~~~ 88 (104)
T 2v5f_A 85 NLKY 88 (104)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5553
No 214
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=98.62 E-value=2.2e-07 Score=85.16 Aligned_cols=118 Identities=19% Similarity=0.267 Sum_probs=80.2
Q ss_pred ceeEecccCCCHH------HHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCcccc
Q 011451 223 HFTVCGDVHGQFY------DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (485)
Q Consensus 223 ~~~v~GDihG~~~------dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 296 (485)
++.+++|+|++.. .+.++++ ....+.++++||++| .+++..|..+. ..+++++||||....
T Consensus 27 ~i~~iSD~H~~~~~~~l~~~l~~~~~----~~~~D~vi~~GDl~~-----~~~l~~l~~~~----~~v~~V~GNHD~~~~ 93 (215)
T 2a22_A 27 LVLLIGDLKIPYGAKELPSNFRELLA----TDKINYVLCTGNVCS-----QEYVEMLKNIT----KNVYIVSGDLDSAIF 93 (215)
T ss_dssp EEEEECCCCTTTTCSSCCGGGHHHHH----CTTCCEEEECSCCCC-----HHHHHHHHHHC----SCEEECCCTTCCSCC
T ss_pred EEEEEecCCCCCChHHHHHHHHHHHh----cCCCCEEEECCCCCC-----HHHHHHHHHcC----CCEEEecCCCcCccc
Confidence 5899999999752 3333333 223467999999997 57777776553 368999999998765
Q ss_pred ccccCchhHHHhhhcHHHHHHHHHHhcccccccee---CCcEEEEeCccccCCCCChhhhhhccCCCCCCCCCccccccc
Q 011451 297 NKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVL---NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPEEGLMCELLW 373 (485)
Q Consensus 297 ~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~i---~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~~~~~~~llw 373 (485)
... .+++..+|....+ +.+++++||....+ |
T Consensus 94 ~~~-------------------~~~~~~lp~~~~~~~~~~~i~l~Hg~~~~~---------------------------~ 127 (215)
T 2a22_A 94 NPD-------------------PESNGVFPEYVVVQIGEFKIGLMHGNQVLP---------------------------W 127 (215)
T ss_dssp BCC-------------------GGGTBCCCSEEEEEETTEEEEEECSTTSSS---------------------------T
T ss_pred ccC-------------------hhhHhhCCceEEEecCCeEEEEEcCCccCC---------------------------C
Confidence 411 0255667754433 34899999765110 1
Q ss_pred CCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccc
Q 011451 374 SDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKD 418 (485)
Q Consensus 374 ~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~ 418 (485)
.+.+.+.++++..+.+++|-||+-..
T Consensus 128 -------------------~~~~~l~~~~~~~~~d~vl~GHtH~~ 153 (215)
T 2a22_A 128 -------------------DDPGSLEQWQRRLDCDILVTGHTHKL 153 (215)
T ss_dssp -------------------TCHHHHHHHHHHHTCSEEEECSSCCC
T ss_pred -------------------CCHHHHHHHHhhcCCCEEEECCcCCC
Confidence 13456778888889999999999753
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.62 E-value=1.5e-07 Score=95.52 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-----NSQN---AVYYANRAFAHTKLEEYGSAIQDASKAIEI-------- 77 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~eAl~~~~~al~~-------- 77 (485)
+.........+..+|+|++|++.|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++..
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 444555566778899999999999999976 2444 577899999999999999999999999975
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHH
Q 011451 78 DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL-----SPNDPDAA---QKVKECE 126 (485)
Q Consensus 78 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~---~~l~~~~ 126 (485)
+|+-+..++++|.+|..+|++++|+..|++|+++ .|++|... ..++.+.
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 3344567999999999999999999999999986 57777654 3344444
No 216
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.61 E-value=2.5e-07 Score=103.49 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---------- 80 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~---------- 80 (485)
.+.+.+|+++|.++...|++++|++.|.+| +++..|..+|.++.+.|++++|++++..|.+..++
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 455788999999999999999999999886 78899999999999999999999999887755533
Q ss_pred -----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011451 81 -----------------YPKGYYRRGAAYLAMGKFKEALKDFQQV 108 (485)
Q Consensus 81 -----------------~~~~~~~lg~~~~~~g~~~eA~~~~~~a 108 (485)
+...+..+|..+...|+|++|...|++|
T Consensus 1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 1223455666666666666666666554
No 217
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.61 E-value=4.8e-07 Score=76.52 Aligned_cols=88 Identities=20% Similarity=0.108 Sum_probs=47.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-
Q 011451 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTK----LEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA- 94 (485)
Q Consensus 20 lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~----~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~- 94 (485)
+|..|...+..++|++.|++|.+. .++.+++++|.+|.. .+++++|+.+|++|.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 445555555555555555555543 445555555555555 45555555555555544 345555555555555
Q ss_pred ---cCCHHHHHHHHHHHHHh
Q 011451 95 ---MGKFKEALKDFQQVKKL 111 (485)
Q Consensus 95 ---~g~~~eA~~~~~~al~~ 111 (485)
.+++++|+.+|++|.+.
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHC
Confidence 55555555555555544
No 218
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=98.60 E-value=7.7e-08 Score=87.67 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=54.9
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCC--------ChHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011451 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGS--------FSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~--------~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
++.+++|+||+...+.++++..... ..+.++++||++|+|+ .+.+++.+|..++ ..|++++||||..
T Consensus 27 ki~~iSD~H~~~~~l~~~l~~~~~~-~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNHD~~ 101 (208)
T 1su1_A 27 KLMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVA----HKVIAVRGNCDSE 101 (208)
T ss_dssp EEEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTG----GGEEECCCTTCCH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHhc-CCCEEEECCCccccCcccccccccCHHHHHHHHHhcC----CceEEEECCCchH
Confidence 5899999999999998888764321 2357999999999998 3688888887765 3699999999985
Q ss_pred c
Q 011451 295 S 295 (485)
Q Consensus 295 ~ 295 (485)
.
T Consensus 102 ~ 102 (208)
T 1su1_A 102 V 102 (208)
T ss_dssp H
T ss_pred H
Confidence 4
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.59 E-value=4.7e-07 Score=72.55 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELN-------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~-------p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
+.-++.+|..++..++|+.|+..|++|++.. +..+.++..+|.++.++|++++|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4567899999999999999999999999873 345889999999999999999999999999999999999988
Q ss_pred HHH
Q 011451 87 RRG 89 (485)
Q Consensus 87 ~lg 89 (485)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 776
No 220
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.58 E-value=1.1e-07 Score=97.88 Aligned_cols=106 Identities=10% Similarity=0.063 Sum_probs=92.7
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q 011451 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI- 77 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~- 77 (485)
-..+|..+..+.++|.+|..+|+|++|+.+|+++|++ +|+-+..+.+||.+|..+|++++|+..+++|+++
T Consensus 344 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 344 ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999986 2444677999999999999999999999999975
Q ss_pred ----CCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011451 78 ----DPRY---PKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (485)
Q Consensus 78 ----~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 112 (485)
.|++ ......++.++..++++++|...|+++.+..
T Consensus 424 ~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 424 LVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 4566789999999999999999999987654
No 221
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.57 E-value=3.7e-07 Score=77.26 Aligned_cols=108 Identities=23% Similarity=0.189 Sum_probs=92.3
Q ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHH
Q 011451 27 AKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA----MGKFKEAL 102 (485)
Q Consensus 27 ~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~ 102 (485)
.+++++|++.|+++.+.....+. +|.+|...+..++|+.+|++|.+. .++.+++++|.+|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35789999999999998754444 999999999999999999999987 789999999999999 89999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHh--hhhHHHhhcCCc
Q 011451 103 KDFQQVKKLSPNDPDAAQKVKECEKAVK--KLKFEEAIAVPE 142 (485)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~~~A~~~~~ 142 (485)
.+|++|.+. .++.+...++.++..-. ..++++|+.+++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 999999986 78999999999985410 334677777776
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.56 E-value=4.4e-07 Score=88.76 Aligned_cols=137 Identities=11% Similarity=0.013 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-------HHHHH-HHH--HHHHhCC
Q 011451 13 RAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEY-------GSAIQ-DAS--KAIEIDP 79 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~---~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~-------~eAl~-~~~--~al~~~p 79 (485)
.+-.++..|..++..++ ..+|+.+|++|++++|+++.++..++.+|.....+ -+++. .++ .++..+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 45667788888887654 57899999999999999999999999988632211 11111 111 2335679
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCcccccccccccccccccc
Q 011451 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEV 159 (485)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~ 159 (485)
.++.++..++.++...|++++|+..+++|++++|+ ..++..++.++...|+ .++|++.++ +++.+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~--~~eA~e~~~------------~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM--NREAADAYL------------TAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC--HHHHHHHHH------------HHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC--HHHHHHHHH------------HHHhc
Confidence 99999999999999999999999999999999974 6777888998877776 688888888 88888
Q ss_pred CCCCC
Q 011451 160 EPQYS 164 (485)
Q Consensus 160 ~~~~~ 164 (485)
+|...
T Consensus 340 ~P~~~ 344 (372)
T 3ly7_A 340 RPGAN 344 (372)
T ss_dssp SCSHH
T ss_pred CCCcC
Confidence 88653
No 223
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=98.52 E-value=2.2e-06 Score=76.86 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=43.5
Q ss_pred ceeEecccCCCHH--HHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccc
Q 011451 223 HFTVCGDVHGQFY--DLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 223 ~~~v~GDihG~~~--dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
++.+++|+|+... .+...+...-.....+.++++||++| .+++..|..+. ..++.++||||...
T Consensus 12 ~i~~iSD~H~~~~~~~~~~~l~~~~~~~~~d~ii~~GDl~~-----~~~~~~l~~~~----~~~~~v~GNhD~~~ 77 (192)
T 1z2w_A 12 LVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLA----GDVHIVRGDFDENL 77 (192)
T ss_dssp EEEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHC----SEEEECCCTTCCCT
T ss_pred EEEEEecCCCCccchhHHHHHHHHhccCCCCEEEEcCCCCC-----HHHHHHHHhcC----CCEEEEcCCcCccc
Confidence 5899999999642 23333332211234567999999997 57777766553 36899999999765
No 224
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.44 E-value=5.4e-07 Score=92.17 Aligned_cols=124 Identities=10% Similarity=0.007 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHccCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCChHHH
Q 011451 13 RAEELKALANEAFRAKKYS----QAIDLYSQAIELNSQNAVYYANRAFAHTKLE---EYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~----~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g---~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
.+.+++.+|..|...+.++ +|..+++.+...+|. +++++|.+|...| ++++|+.+|+++.+..|..+..+
T Consensus 140 ~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 140 YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 4567888999999888554 444455555554444 9999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHhhhhHHHhhcCCc
Q 011451 86 YRRGAAYLAM----GKFKEALKDFQQVKKLSPNDPDAAQKVKEC-EKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 86 ~~lg~~~~~~----g~~~eA~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~~~~~A~~~~~ 142 (485)
+.+|.+|... +++++|+.+|+++. |+++.+++.++.+ +...+.+++++|+.+++
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 9999999776 79999999999998 9999999999998 43344666888888877
No 225
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.43 E-value=1.3e-06 Score=83.92 Aligned_cols=126 Identities=9% Similarity=-0.007 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----ChHHHHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNS--QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR----YPKGYYR 87 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p--~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~----~~~~~~~ 87 (485)
..++..+|.++...|++++|++.+.+++..+| .+..++..++.++..+|+.+.|.+.++++.+.+|+ +-.....
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 44567899999999999999999999998887 78899999999999999999999999999888883 2334444
Q ss_pred HHHH--HHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 88 RGAA--YLAMG--KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 88 lg~~--~~~~g--~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++.+ ....| ++++|...|+++.+..|+.......++ ++..+++ +++|...++
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~--~~eAe~~L~ 235 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRN--IAEAQGIVE 235 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTC--HHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCC--HHHHHHHHH
Confidence 5444 55556 899999999998877776223222333 5544444 677777665
No 226
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=98.40 E-value=1e-06 Score=79.26 Aligned_cols=136 Identities=15% Similarity=0.066 Sum_probs=83.3
Q ss_pred ceeEecccCCCHHHH-------------HHHHHHcC-CCCCCCCeEEcccccCCCCChHHHHHHHHhchhcCCCcEEEec
Q 011451 223 HFTVCGDVHGQFYDL-------------LNIFELNG-LPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMCPSAIYLSR 288 (485)
Q Consensus 223 ~~~v~GDihG~~~dl-------------~~il~~~~-~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~~p~~v~~lr 288 (485)
++.+++|+|+....+ ..+++... .....+.++++||++++|+...+++.+|..+. ..+++++
T Consensus 3 ~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~----~~~~~v~ 78 (195)
T 1xm7_A 3 MMYFISDTHFYHENIINLNPEVRFKGFEIVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWKALP----GRKILVM 78 (195)
T ss_dssp CEEEEBCCCBTCTTHHHHSTTTCCTTHHHHHHHHHHTTCCTTCEEEECSCCBSCSCCTTSHHHHHHHSS----SEEEEEC
T ss_pred EEEEEeccccCCCccccccCCCCHHHHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHHHHCC----CCEEEEe
Confidence 488999999644322 12222211 12345679999999999977778888877663 4699999
Q ss_pred cCCCccccccccCchhHHHhhhcHHHHHHHHHHhccccccce---e-CCcEEEEeCccccCCCCChhhhhhccCCCCCCC
Q 011451 289 GNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHV---L-NQKVFVVHGGLFSVDGVKLSDIKTIDRFCEPPE 364 (485)
Q Consensus 289 GNHE~~~~~~~~~f~~e~~~~~~~~~~~~~~~~f~~lPl~~~---i-~~~~~~vHgGi~~~~~~~~~~i~~~~r~~~~~~ 364 (485)
||||...... . ..|..+|-... + +.+++++||-+ .+.. .
T Consensus 79 GNhD~~~~~~--------~------------~~~~~l~~~~~l~~~~~~~i~~~H~~~-~~~~----------------~ 121 (195)
T 1xm7_A 79 GNHDKDKESL--------K------------EYFDEIYDFYKIIEHKGKRILLSHYPA-KDPI----------------T 121 (195)
T ss_dssp CTTCCCHHHH--------T------------TTCSEEESSEEEEEETTEEEEEESSCS-SCSS----------------C
T ss_pred CCCCCchhhh--------h------------hhhhchhHHHHHHhcCCcEEEEEccCC-cCCC----------------c
Confidence 9999754210 0 11222332222 2 34799999743 1100 0
Q ss_pred CCcccccccCCCCCCCCCCcCCCCCccccCHHHHHHHHHHCCCcEEEeeccccccCcEE
Q 011451 365 EGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQDNSLDLVVRSHEVKDEGYEI 423 (485)
Q Consensus 365 ~~~~~~llw~dp~~~~~~~~~~rg~~~~fg~~~~~~fl~~~~~~~iir~h~~~~~G~~~ 423 (485)
. . +..+.+.+.+.++..+++.+|-||+-....+.+
T Consensus 122 ~------~------------------~~~~~~~l~~~~~~~~~~~vi~GHtH~~~~~~~ 156 (195)
T 1xm7_A 122 E------R------------------YPDRQEMVREIYFKENCDLLIHGHVHWNREGIK 156 (195)
T ss_dssp C------S------------------CHHHHHHHHHHHHHTTCSEEEECCCCCCSCC--
T ss_pred c------c------------------ccchHHHHHHHHHHcCCcEEEECCcCCCCcccc
Confidence 0 0 012456788888989999999999976555443
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.35 E-value=6.1e-06 Score=67.65 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=90.5
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHH
Q 011451 25 FRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGS---AIQDASKAIEID-P-RYPKGYYRRGAAYLAMGKFK 99 (485)
Q Consensus 25 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~e---Al~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~ 99 (485)
........+.+.|.+++..++....+.+++|.++.+.....+ ++..++..+..+ | ....+++.+|..++++|+|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 344566778888999888889999999999999999887666 999999988877 5 56789999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011451 100 EALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (485)
Q Consensus 100 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (485)
+|..+++..++..|+|..+......+...+
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887777665444
No 228
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=98.34 E-value=4.2e-06 Score=81.49 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=46.0
Q ss_pred CceeEecccCCC------------HHHHHHHHHHcCC-CCCCCCeEEcccccCCCCCh-HHH-HHHHHhchhcCCCcEEE
Q 011451 222 KHFTVCGDVHGQ------------FYDLLNIFELNGL-PSEENPYLFNGDFVDRGSFS-VEV-ILTLFAFKCMCPSAIYL 286 (485)
Q Consensus 222 ~~~~v~GDihG~------------~~dl~~il~~~~~-~~~~~~~vflGD~vdrG~~s-~e~-l~~l~~lk~~~p~~v~~ 286 (485)
.++.+++|+|.. ...+.++++.+.. ....+.+|++||++|.|... .+. ...+-.+....+..|++
T Consensus 26 ~ri~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~ 105 (330)
T 3ib7_A 26 YVLLHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVW 105 (330)
T ss_dssp EEEEEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 368999999962 5666666665432 12345799999999999742 222 22222221122445999
Q ss_pred eccCCCc
Q 011451 287 SRGNHES 293 (485)
Q Consensus 287 lrGNHE~ 293 (485)
++||||.
T Consensus 106 v~GNHD~ 112 (330)
T 3ib7_A 106 VMGNHDD 112 (330)
T ss_dssp CCCTTSC
T ss_pred eCCCCCC
Confidence 9999996
No 229
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.32 E-value=5.7e-07 Score=90.25 Aligned_cols=120 Identities=20% Similarity=0.229 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 011451 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (485)
+|..+|..++..|+|++|+.+|.++ ..|..+|.|+.++|++++|++++++| .++.+|.....++...
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG 190 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence 5666666666666666666666654 35556666666666666666666665 3455666655666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCCCCc
Q 011451 96 GKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGA 166 (485)
Q Consensus 96 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 166 (485)
|+++.|..+... +. .+++-...+..+|...|+ +++|+.+++ +++.+++.+.+.
T Consensus 191 ~ef~lA~~~~l~-L~---~~ad~l~~lv~~Yek~G~--~eEai~lLe------------~aL~le~ah~~~ 243 (449)
T 1b89_A 191 KEFRLAQMCGLH-IV---VHADELEELINYYQDRGY--FEELITMLE------------AALGLERAHMGM 243 (449)
T ss_dssp TCHHHHHHTTTT-TT---TCHHHHHHHHHHHHHTTC--HHHHHHHHH------------HHTTSTTCCHHH
T ss_pred CcHHHHHHHHHH-HH---hCHhhHHHHHHHHHHCCC--HHHHHHHHH------------HHhCCcHHHHHH
Confidence 666666544432 11 223323334444433333 556655555 777777665544
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.28 E-value=3.2e-06 Score=79.45 Aligned_cols=107 Identities=7% Similarity=-0.015 Sum_probs=91.3
Q ss_pred CchhHHHHHHHHHHHHHH-----cc------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----cCHHHHHHH
Q 011451 9 SSVSRAEELKALANEAFR-----AK------KYSQAIDLYSQAIELNSQ--NAVYYANRAFAHTKL-----EEYGSAIQD 70 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~-----~g------~~~~A~~~y~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~eAl~~ 70 (485)
..++.++.++=.|..... .+ ...+|...+++|++++|+ +..+|..+|..|... |+.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 346677777666655533 23 357899999999999999 677999999999995 999999999
Q ss_pred HHHHHHhCCCC-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 011451 71 ASKAIEIDPRY-PKGYYRRGAAYLA-MGKFKEALKDFQQVKKLSPND 115 (485)
Q Consensus 71 ~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~ 115 (485)
|++|++++|+. ..+++..|..+.. +|++++|...++++++..|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999975 9999999999988 599999999999999988764
No 231
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.27 E-value=3.2e-06 Score=81.15 Aligned_cols=120 Identities=10% Similarity=-0.046 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcc--CHHHHHHHHHHHHHhCCCCh
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ----NAVYYANR--AFAHTKLE--EYGSAIQDASKAIEIDPRYP 82 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~----~~~~~~~l--g~~~~~~g--~~~eAl~~~~~al~~~p~~~ 82 (485)
+...+++...+.++.+.|+.+.|.+.+++..+.+|+ +-.....+ |.+.+..| ++++|...|+++....|+..
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~ 212 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK 212 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc
Confidence 477888999999999999999999999999999983 23334444 44466666 89999999999988888622
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHhh
Q 011451 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL----------SPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 83 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------~p~~~~~~~~l~~~~~~~~~ 131 (485)
.....+. ++..+|++++|.+.++++++. +|++++++.++..+...+++
T Consensus 213 ~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 213 TQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 2233333 899999999999999987776 58899999888777766553
No 232
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=98.26 E-value=2.7e-05 Score=73.42 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=45.9
Q ss_pred ceeEecccCCCH------------HHHHHHHHHcCC-CCCCCCeEEcccccCCCCChH--HHHHHHHhchhcCCCcEEEe
Q 011451 223 HFTVCGDVHGQF------------YDLLNIFELNGL-PSEENPYLFNGDFVDRGSFSV--EVILTLFAFKCMCPSAIYLS 287 (485)
Q Consensus 223 ~~~v~GDihG~~------------~dl~~il~~~~~-~~~~~~~vflGD~vdrG~~s~--e~l~~l~~lk~~~p~~v~~l 287 (485)
++.+++|+|+.. ..+.++++.... .+..+.+|++||+++.|..+. ++...|-.+ +..++.+
T Consensus 2 ri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l----~~p~~~v 77 (274)
T 3d03_A 2 LLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSL----NYPLYLI 77 (274)
T ss_dssp EEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTC----SSCEEEE
T ss_pred EEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhc----CCCEEEE
Confidence 478999999984 567777765432 233467999999999987432 222222222 3458999
Q ss_pred ccCCCcc
Q 011451 288 RGNHESK 294 (485)
Q Consensus 288 rGNHE~~ 294 (485)
+||||..
T Consensus 78 ~GNHD~~ 84 (274)
T 3d03_A 78 PGNHDDK 84 (274)
T ss_dssp CCTTSCH
T ss_pred CCCCCCH
Confidence 9999974
No 233
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.23 E-value=5.2e-06 Score=93.07 Aligned_cols=120 Identities=18% Similarity=0.177 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------------
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--------------- 79 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p--------------- 79 (485)
..+...|..++..|+|++|+..|.+| ..|..+|.++.++|++++|++++++|....+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHH
Confidence 45678999999999999999999996 5899999999999999999999999854433
Q ss_pred ----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 80 ----------RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 80 ----------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
.+++.+..++..|...|.+++|+..+++++.+++.+...+..++.++.+.+..+..+++.++.
T Consensus 1268 LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1268 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 134455677888999999999999999999999999999999999998888777788877776
No 234
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=4.7e-06 Score=70.89 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 011451 11 VSRAEELKALANEAFRAK---KYSQAIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGY 85 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g---~~~~A~~~y~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~ 85 (485)
+...++.+++|.++.+.+ +.++|+..++++++.+ | +..++++++|..++++|+|++|+.+++++++.+|++.++.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 346789999999999988 6779999999999998 7 5689999999999999999999999999999999999887
Q ss_pred HHHHHH
Q 011451 86 YRRGAA 91 (485)
Q Consensus 86 ~~lg~~ 91 (485)
..+-.+
T Consensus 109 ~Lk~~i 114 (152)
T 1pc2_A 109 ELERLI 114 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 235
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=7.4e-06 Score=82.29 Aligned_cols=125 Identities=9% Similarity=0.051 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 011451 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNA-----------------VYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~eAl~~~~~al~~~ 78 (485)
+....|..+.+.|+|++|++.|.++++..|... .++.++|.+|...|++++|++.+.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999987642 468899999999999999999999999876
Q ss_pred CCChH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 79 PRYPK------GYYRRGAAYLAMGKFKEALKDFQQVKKLSPN------DPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 79 p~~~~------~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
+.... +...+|.++...|++++|+..+++++...+. ...++..++.++...++ +.+|+.++.
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~ 159 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ--YKDSLALIN 159 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 65433 4556788888999999999999999986432 24577788888866665 788888777
No 236
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=7.6e-06 Score=82.23 Aligned_cols=130 Identities=11% Similarity=0.019 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA------VYYANRAFAHTKLEEYGSAIQDASKAIEIDP----- 79 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p----- 79 (485)
.....++..+|..|...|++++|++.|.+++...+... .+...+|.++...|++++|+..+++++...+
T Consensus 52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 44567799999999999999999999999998766542 3466788888889999999999999997633
Q ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 80 -RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS------PNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 80 -~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
....++..+|.+|..+|++++|+..+++++... +...+++..++.++...++ +.+|..++.
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~ 199 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRN--LAKSKASLT 199 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCc--HHHHHHHHH
Confidence 235688899999999999999999999998763 2234577788888866555 788887776
No 237
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.16 E-value=1.1e-05 Score=80.89 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
..+..|..+|.++.+.|++++|++.|++| .++..|...+.++...|+++.|..+..+ +..+|++ ...+...
T Consensus 146 ~~a~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~ 216 (449)
T 1b89_A 146 NNVSNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINY 216 (449)
T ss_dssp HHTTCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHH
T ss_pred HHhhhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHH
Confidence 34556789999999999999999999999 5799999999999999999999888775 3355544 4568899
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
|.+.|++++|+..+++++.+++.....+..++.++.+.+..+..+.+..+.
T Consensus 217 Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888877888888776
No 238
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.13 E-value=9.1e-06 Score=76.40 Aligned_cols=108 Identities=11% Similarity=0.069 Sum_probs=84.0
Q ss_pred hCCCCHHHHHHHHHHHHH---c--c------CHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHc-----CCHHHHHHH
Q 011451 43 LNSQNAVYYANRAFAHTK---L--E------EYGSAIQDASKAIEIDPR--YPKGYYRRGAAYLAM-----GKFKEALKD 104 (485)
Q Consensus 43 ~~p~~~~~~~~lg~~~~~---~--g------~~~eAl~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~eA~~~ 104 (485)
.+|+++.+++-.|..... . | ...+|...+++|+++||+ +..+|..+|..|... |+.++|.++
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 356677776666655432 1 2 367999999999999999 677999999999996 999999999
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHHhhhhHHHhhcCCccccccccccccccccccCCCC
Q 011451 105 FQQVKKLSPND-PDAAQKVKECEKAVKKLKFEEAIAVPESERHSVADSIDYQSIEVEPQY 163 (485)
Q Consensus 105 ~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~ 163 (485)
|++|++++|+. .+.+...+..+... .++++++..+++ +++...|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~-~gd~~~a~~~L~------------kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIP-LNNRAGFDEALD------------RALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTT-TTCHHHHHHHHH------------HHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHh-cCCHHHHHHHHH------------HHHcCCCCC
Confidence 99999999975 99999998877332 133577777777 777776654
No 239
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.13 E-value=1.8e-05 Score=77.31 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=84.7
Q ss_pred CchhHHHHHHHHHHHHHHccC-------HHHHHH-HHH--HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 011451 9 SSVSRAEELKALANEAFRAKK-------YSQAID-LYS--QAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID 78 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~-------~~~A~~-~y~--~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~ 78 (485)
.+|+.+.++..++.++..... ...++. .++ .++..+|.++.++..+|..+...|++++|+..+++|+.++
T Consensus 228 lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 228 SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 357777777777776642111 111111 122 2235679999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011451 79 PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 79 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
| +..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus 308 ~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 308 M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 7 4778899999999999999999999999999998764
No 240
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.88 E-value=3e-05 Score=78.47 Aligned_cols=90 Identities=8% Similarity=0.016 Sum_probs=73.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 6 TENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 6 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
....+|..+..+.++|.+|..+|+|++|+++++++|++ +|.-+..++++|.+|..+|++++|+..+++|+++
T Consensus 321 lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 321 LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999986 2444677999999999999999999999999975
Q ss_pred -----CCCChH---HHHHHHHHHHHc
Q 011451 78 -----DPRYPK---GYYRRGAAYLAM 95 (485)
Q Consensus 78 -----~p~~~~---~~~~lg~~~~~~ 95 (485)
.|+++. .+.+++.+...+
T Consensus 401 ~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 401 MRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 556544 445566665543
No 241
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.84 E-value=0.00039 Score=74.30 Aligned_cols=179 Identities=13% Similarity=0.020 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHccCHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL-----------NSQ-----------NAVYYANRAFAHTKLEEYGSAI 68 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~-----------~p~-----------~~~~~~~lg~~~~~~g~~~eAl 68 (485)
|.....|...+......|++++|.+.|++++.. .|. .+.+|...+....+.|..+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 455667888999999999999999999999975 253 3567999999988999999999
Q ss_pred HHHHHHHHh-CCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCccccc
Q 011451 69 QDASKAIEI-DPRYPKGYYRRGAAYLAMGK-FKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPESERH 146 (485)
Q Consensus 69 ~~~~~al~~-~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~~~~~ 146 (485)
+.|.+|++. .+.....|...|.+-...++ .+.|.+.|+++++..|+++..+...+......+ +.+.|..+++
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~--~~~~AR~lfe---- 528 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN--EESQVKSLFE---- 528 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CHHHHHHHHH----
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC--CHHHHHHHHH----
Confidence 999999987 54567788877877777654 899999999999999999998876666654443 4677777777
Q ss_pred cccccccccccccCCCCCCccccCCcccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhcCCCc
Q 011451 147 SVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSL 213 (485)
Q Consensus 147 ~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ep~~ 213 (485)
+++...|. .. ........+++.-...+.. +.+..+..++.+.+.+++.+
T Consensus 529 --------ral~~~~~-------~~-~~~~lw~~~~~fE~~~G~~--~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 529 --------SSIDKISD-------SH-LLKMIFQKVIFFESKVGSL--NSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp --------HHTTTSSS-------TT-HHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHHHSTTCCHH
T ss_pred --------HHHHhcCC-------HH-HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCcHH
Confidence 56654442 00 1112222333332233333 34777777777777766543
No 242
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.83 E-value=3.6e-05 Score=77.87 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=68.1
Q ss_pred CCCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q 011451 7 ENSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--------NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI- 77 (485)
Q Consensus 7 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~- 77 (485)
-..+|..+..+.++|.+|..+|+|++|+.+|+++|++ +|+-+..+.++|.+|..+|++++|+..|++|+++
T Consensus 333 g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 333 EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999986 3445677999999999999999999999999976
Q ss_pred ----CCCChHH
Q 011451 78 ----DPRYPKG 84 (485)
Q Consensus 78 ----~p~~~~~ 84 (485)
.|+++..
T Consensus 413 ~~~lG~~Hp~~ 423 (433)
T 3qww_A 413 EVAHGKDHPYI 423 (433)
T ss_dssp HHHTCTTCHHH
T ss_pred HHHcCCCChHH
Confidence 5666554
No 243
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=97.79 E-value=2.3e-05 Score=75.55 Aligned_cols=71 Identities=21% Similarity=0.090 Sum_probs=45.7
Q ss_pred ceeEecccCCCH-------------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCC----hHHHHHHHHhchhc
Q 011451 223 HFTVCGDVHGQF-------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSF----SVEVILTLFAFKCM 279 (485)
Q Consensus 223 ~~~v~GDihG~~-------------------~dl~~il~~~~~~~~~~~~vflGD~vdrG~~----s~e~l~~l~~lk~~ 279 (485)
++++++|+|... ..+.++++.... ...+.+|++||+++.|.. +.+.+..+..+-..
T Consensus 7 ~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~ 85 (322)
T 2nxf_A 7 TFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRR-ERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDA 85 (322)
T ss_dssp EEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHH-TTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHT
T ss_pred EEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHh-cCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHh
Confidence 588999999765 445555554322 234579999999998852 13333333322222
Q ss_pred CCCcEEEeccCCCcc
Q 011451 280 CPSAIYLSRGNHESK 294 (485)
Q Consensus 280 ~p~~v~~lrGNHE~~ 294 (485)
.+..++.++||||..
T Consensus 86 ~~~p~~~v~GNHD~~ 100 (322)
T 2nxf_A 86 CSVDVHHVWGNHEFY 100 (322)
T ss_dssp TCSEEEECCCHHHHH
T ss_pred cCCcEEEecCCCCcc
Confidence 356799999999985
No 244
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=97.77 E-value=1.1e-05 Score=75.77 Aligned_cols=71 Identities=6% Similarity=0.057 Sum_probs=49.7
Q ss_pred ceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCChH--------------------------HHHHHHHhc
Q 011451 223 HFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSV--------------------------EVILTLFAF 276 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~--------------------------e~l~~l~~l 276 (485)
++.+++|+|++...+.++++.... ...+.+|++||++|+|+.+. +...++-.|
T Consensus 7 ri~~iSDlH~~~~~~~~~l~~~~~-~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l 85 (260)
T 2yvt_A 7 KVLAIKNFKERFDLLPKLKGVIAE-KQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFREI 85 (260)
T ss_dssp EEEEEECCTTCGGGHHHHHHHHHH-HCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCCChHHHHHHHHHHHh-cCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHHH
Confidence 589999999999888887776421 13457999999999997531 123333333
Q ss_pred hhcCCCcEEEeccCCCccc
Q 011451 277 KCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 277 k~~~p~~v~~lrGNHE~~~ 295 (485)
+. .+..|+.++||||...
T Consensus 86 ~~-~~~pv~~v~GNHD~~~ 103 (260)
T 2yvt_A 86 GE-LGVKTFVVPGKNDAPL 103 (260)
T ss_dssp HT-TCSEEEEECCTTSCCH
T ss_pred Hh-cCCcEEEEcCCCCchh
Confidence 32 2456999999999754
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.70 E-value=0.0014 Score=54.52 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=74.6
Q ss_pred CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 011451 45 SQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (485)
Q Consensus 45 p~~~~~~~~lg~~~~~~g~---~~eAl~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 120 (485)
.....+.+++|.++.+... ..+++..++..+..+|. ..+.++.+|..++++|+|++|..+.+..++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 5679999999999998875 45899999999998885 5788999999999999999999999999999999999887
Q ss_pred HHHHHHHHHh
Q 011451 121 KVKECEKAVK 130 (485)
Q Consensus 121 ~l~~~~~~~~ 130 (485)
....+...+.
T Consensus 116 Lk~~Ie~~i~ 125 (144)
T 1y8m_A 116 LKSMVEDKIQ 125 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766654443
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.68 E-value=0.00054 Score=56.22 Aligned_cols=100 Identities=9% Similarity=0.004 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 011451 31 SQAIDLYSQAIELNSQNAVYYANRAFAHTKLEE---YGSAIQDASKAIEIDPR-YPKGYYRRGAAYLAMGKFKEALKDFQ 106 (485)
Q Consensus 31 ~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~---~~eAl~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~ 106 (485)
+...+.|.+-+ ...-.+.+.+++|.++.+..+ ..+++..++..++.+|. ..+.++.+|..++++|+|++|..+.+
T Consensus 24 ~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 24 EILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444454433 233468999999999998875 45799999999998884 57899999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHhh
Q 011451 107 QVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 107 ~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
.+++..|+|..+......+...+.+
T Consensus 103 ~lL~~eP~N~QA~~Lk~~Ie~ki~k 127 (134)
T 3o48_A 103 TLFEHERNNKQVGALKSMVEDKIQK 127 (134)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999998877777655553
No 247
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=97.67 E-value=0.0003 Score=66.89 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=44.1
Q ss_pred CCceeEecccCCCHHHHHHHHHHcCCCCCCCCeEEcccccCCCCCh--HHHHHHHHhchhcCCCcEEEeccCCCccc
Q 011451 221 GKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFS--VEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 221 ~~~~~v~GDihG~~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s--~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
+.++++++|+||....+ ..+ ..+.+|+.||++|+|... .+++.+|-.+. . ..++++.||||...
T Consensus 59 ~mri~~iSD~H~~~~~l-------~i~-~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~--~-~~v~~V~GNHD~~~ 124 (296)
T 3rl5_A 59 HTRFVCISDTRSRTDGI-------QMP-YGDILLHTGDFTELGLPSEVKKFNDWLGNLP--Y-EYKIVIAGNHELTF 124 (296)
T ss_dssp EEEEEEEBCCTTCCTTC-------CCC-SCSEEEECSCCSSSCCHHHHHHHHHHHHTSC--C-SEEEECCCTTCGGG
T ss_pred CeEEEEEeeCCCCcchh-------ccC-CCCEEEECCcccCCCCHHHHHHHHHHHHhCC--C-CeEEEEcCCccccc
Confidence 34799999999987643 223 456799999999999742 22334443332 2 34889999999853
No 248
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.65 E-value=0.00011 Score=78.47 Aligned_cols=80 Identities=13% Similarity=-0.004 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011451 32 QAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAI-QDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 32 ~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 110 (485)
.....|++++...|.++.+|...|..+...|+.++|. +.|++|+...|.+...|..++......|++++|.+.|++++.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455666666666666677776666666666666665 666676666666666666666666666666666666666665
Q ss_pred h
Q 011451 111 L 111 (485)
Q Consensus 111 ~ 111 (485)
.
T Consensus 407 ~ 407 (679)
T 4e6h_A 407 R 407 (679)
T ss_dssp H
T ss_pred H
Confidence 3
No 249
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=97.59 E-value=0.001 Score=67.52 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHCCCcEEEeeccccccCcEEe-cCCeEEEEecCCCCCCCCCCeEEEEEEecCC
Q 011451 394 GADVTKRFLQDNSLDLVVRSHEVKDEGYEIE-HDGKLITVFSAPNYCDQMGNKGAFIRFEAPT 455 (485)
Q Consensus 394 g~~~~~~fl~~~~~~~iir~h~~~~~G~~~~-~~~~~~tvfsa~~y~~~~~n~~a~~~~~~~~ 455 (485)
+.+.+.+.+++.++++++-||.-........ .+++-+.++.+...+. ..+.=+++.|+++.
T Consensus 261 ~~~~l~~ll~~~~v~lvl~GH~H~~~~~~~~~~~g~~~~~i~~gs~~~-~p~~y~il~i~~~~ 322 (443)
T 2xmo_A 261 YNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSV-FPHKYGNITYSAKN 322 (443)
T ss_dssp THHHHHHHHHHTTCCEEEECSSCSCEEEEEECTTSCEEEEEECCCTTS-TTCEEEEEEEETTT
T ss_pred cHHHHHHHHHHcCCeEEEECCcccCchhhcccCCCCceEEEEcCcccc-CCCCeEEEEEeCCC
Confidence 5678889999999999999999753332222 2444344444433432 23444567774333
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.56 E-value=0.00055 Score=58.57 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------C
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---------AVYYANRAFAHTKLEEYGSAIQDASKAIEID------P 79 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~------p 79 (485)
.+++.....++..+.|+.|+-....++.+..++ ..++..+|.+++..++|..|...|++|+... +
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456777888999999999999999877664332 3478899999999999999999999998641 1
Q ss_pred C-------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 011451 80 R-------------------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECE 126 (485)
Q Consensus 80 ~-------------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 126 (485)
. +.+..+.++.||..++++++|+..++..- ...-.+.....+|.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 1 12678889999999999999998876431 1223455555555543
No 251
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.51 E-value=0.0033 Score=64.71 Aligned_cols=197 Identities=11% Similarity=-0.034 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFA--------------------------------- 57 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~--------------------------------- 57 (485)
|..+..|...+..+...|+.++|...|++|+.. |.+...|...+..
T Consensus 210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 344677888888888888888899999998888 8775555443332
Q ss_pred -------HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 011451 58 -------HTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG-KFKEALKDFQQVKKLSPNDPDAAQKVKECEKAV 129 (485)
Q Consensus 58 -------~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 129 (485)
..+.++.+.|...|++| ...+.....|...|.+-...+ +.+.|...|+.+++..|++++.+..........
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence 22355667777777777 322234455655565555555 477777777777777777776655544433332
Q ss_pred hhhhHHHhhcCCccccccccccccccccccCCCCCCccccCCcccHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHhhc
Q 011451 130 KKLKFEEAIAVPESERHSVADSIDYQSIEVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRA 209 (485)
Q Consensus 130 ~~~~~~~A~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~~l~~~~l~~lie~l~~~~~l~~~~~~~ll~~a~~~l~~ 209 (485)
++.+.|..+++ ++. -.......+++.-...+ +.+.+..++.++.+.+..
T Consensus 368 --~~~~~aR~l~e------------r~~---------------k~~~lw~~~~~fE~~~G--~~~~~r~v~~~~~~~~~~ 416 (493)
T 2uy1_A 368 --GDEENARALFK------------RLE---------------KTSRMWDSMIEYEFMVG--SMELFRELVDQKMDAIKA 416 (493)
T ss_dssp --TCHHHHHHHHH------------HSC---------------CBHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHH------------HHH---------------HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHhcc
Confidence 23455555555 220 01222333333222222 344577788888887763
Q ss_pred ----CCCcceecCCCCCceeEecccCCCHHHHHHHHHHcCC
Q 011451 210 ----LPSLVDIDIPDGKHFTVCGDVHGQFYDLLNIFELNGL 246 (485)
Q Consensus 210 ----ep~~~~i~~~~~~~~~v~GDihG~~~dl~~il~~~~~ 246 (485)
+|..+- .. ..-+--.||.+.+++.-++....
T Consensus 417 ~~~~~~~~~~-~~-----~~~fe~~~g~l~~~~~~~~~~~~ 451 (493)
T 2uy1_A 417 DAILPPLPPR-EH-----NVQMEGILGRYHCFLDSFNFLDL 451 (493)
T ss_dssp TCCBCCCCCC--------CCCCCHHHHHHHHHHHHHCBTTB
T ss_pred cccCCccccc-cc-----HHHHHHHhhhHHHHHHHhhhhcc
Confidence 232221 11 22233456888888877765543
No 252
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.46 E-value=0.0027 Score=53.21 Aligned_cols=109 Identities=17% Similarity=0.036 Sum_probs=94.9
Q ss_pred CchhHHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011451 9 SSVSRAEELKALANEAFRAKKY------SQAIDLYSQAIELNSQN--------AVYYANRAFAHTKLEEYGSAIQDASKA 74 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~------~~A~~~y~~al~~~p~~--------~~~~~~lg~~~~~~g~~~eAl~~~~~a 74 (485)
-.|.+.+.|.......-+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3577788999999999999999 88999999999987753 4567777754 6779999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011451 75 IEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 75 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (485)
+.+....+..|...|..-.++|+.+.|.+.+.+|+...|...+.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 99988899999999999999999999999999999999987654
No 253
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.33 E-value=0.00091 Score=54.70 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQ---AIDLYSQAIELN-S-QNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~---A~~~y~~al~~~-p-~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
...++.+++|.++.+..+... ++.+++..++.+ | ..-++.+.+|..++++|+|++|..+++..++.+|++.++..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 456788999999998887766 999999999887 5 56789999999999999999999999999999999999877
Q ss_pred HHHHHH
Q 011451 87 RRGAAY 92 (485)
Q Consensus 87 ~lg~~~ 92 (485)
....+-
T Consensus 113 Lk~~i~ 118 (126)
T 1nzn_A 113 LERLID 118 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.04 E-value=0.0041 Score=51.03 Aligned_cols=81 Identities=9% Similarity=-0.020 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 011451 13 RAEELKALANEAFRAKKY---SQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRR 88 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~---~~A~~~y~~al~~~p~-~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~l 88 (485)
.+++.+++|..+.+..+. .+++..++..++.+|. .-+.++.+|..++++|+|++|..+.+..++.+|++.++....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 457889999999887754 5799999999999884 588999999999999999999999999999999999987766
Q ss_pred HHHHH
Q 011451 89 GAAYL 93 (485)
Q Consensus 89 g~~~~ 93 (485)
..+-.
T Consensus 119 ~~Ie~ 123 (134)
T 3o48_A 119 SMVED 123 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 255
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.02 E-value=0.007 Score=50.27 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 011451 11 VSRAEELKALANEAFRAKKY---SQAIDLYSQAIELNSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYY 86 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~---~~A~~~y~~al~~~p~-~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~ 86 (485)
...+++.+++|..+.+..+. .+++.+++..++.+|. .-+..+.+|..++++|+|++|..+.+..++.+|++.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34567889999999988764 5799999999998884 5788999999999999999999999999999999988876
Q ss_pred HHHHH
Q 011451 87 RRGAA 91 (485)
Q Consensus 87 ~lg~~ 91 (485)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
No 256
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=96.68 E-value=0.0022 Score=63.77 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=47.0
Q ss_pred CceeEecccCCCH-------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHH----HHHHhchhcCCCcE
Q 011451 222 KHFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVI----LTLFAFKCMCPSAI 284 (485)
Q Consensus 222 ~~~~v~GDihG~~-------------~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l----~~l~~lk~~~p~~v 284 (485)
.++..++|+|+.. ..+.++++.+.. ...+.+|+.||++|++.-+.+.+ ..|-.|+. .+-.|
T Consensus 21 mrilhiSD~Hlg~~~~~~~~r~~~~~~~l~~~v~~~~~-~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~-~~~pv 98 (386)
T 3av0_A 21 MMFVHIADNHLGYRQYNLDDREKDIYDSFKLCIKKILE-IKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHE-NNIKV 98 (386)
T ss_dssp CEEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred eEEEEEccCCCCccccCcchhhHHHHHHHHHHHHHHHH-cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHh-cCCcE
Confidence 4689999999762 235555554422 23457999999999995444432 33333332 24579
Q ss_pred EEeccCCCccc
Q 011451 285 YLSRGNHESKS 295 (485)
Q Consensus 285 ~~lrGNHE~~~ 295 (485)
+++.||||...
T Consensus 99 ~~v~GNHD~~~ 109 (386)
T 3av0_A 99 YIVAGNHEMPR 109 (386)
T ss_dssp EECCCGGGSCS
T ss_pred EEEcCCCCCCc
Confidence 99999999765
No 257
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=96.60 E-value=0.0011 Score=64.60 Aligned_cols=72 Identities=24% Similarity=0.219 Sum_probs=42.5
Q ss_pred CCceeEecccC-C----C-----------HHHHHHHHHHcCCCCCCCCeEEccc-ccCCCCChHHHH----HHHHhchhc
Q 011451 221 GKHFTVCGDVH-G----Q-----------FYDLLNIFELNGLPSEENPYLFNGD-FVDRGSFSVEVI----LTLFAFKCM 279 (485)
Q Consensus 221 ~~~~~v~GDih-G----~-----------~~dl~~il~~~~~~~~~~~~vflGD-~vdrG~~s~e~l----~~l~~lk~~ 279 (485)
..++..++|+| | + ...+.++++.+.- ...+.+++.|| ++|++..+.+.+ ..|-.|+..
T Consensus 18 ~mrilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~-~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~ 96 (336)
T 2q8u_A 18 ELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEK-REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT 96 (336)
T ss_dssp EEEEEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHH-HTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHH-hCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 34689999999 7 3 2334445443321 12356999999 999998777643 334444422
Q ss_pred CCCcEEEeccCCCccc
Q 011451 280 CPSAIYLSRGNHESKS 295 (485)
Q Consensus 280 ~p~~v~~lrGNHE~~~ 295 (485)
..|+++.||||...
T Consensus 97 --~pv~~i~GNHD~~~ 110 (336)
T 2q8u_A 97 --APVVVLPGNHDWKG 110 (336)
T ss_dssp --SCEEECCC------
T ss_pred --CCEEEECCCCCccc
Confidence 35999999999854
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.60 E-value=0.0064 Score=51.95 Aligned_cols=83 Identities=22% Similarity=0.160 Sum_probs=65.9
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----------------------CHHHHHHHHHHHHHccC
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNS---Q----------------------NAVYYANRAFAHTKLEE 63 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p---~----------------------~~~~~~~lg~~~~~~g~ 63 (485)
+....++.+..+|+.++.+++|.+|...|++||+... . +.+..+.+|.||.++++
T Consensus 58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~ 137 (167)
T 3ffl_A 58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQ 137 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCC
Confidence 3456778999999999999999999999999987521 1 12688999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011451 64 YGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 64 ~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
+++|+..++..-.. -..+.....||..|
T Consensus 138 ~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 138 DKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 99999998664322 34677777787765
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.57 E-value=0.031 Score=55.41 Aligned_cols=96 Identities=18% Similarity=0.090 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------C--------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQ--------N--------------AVYYANRAFAHTKLEEYGSAIQDAS 72 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~--------~--------------~~~~~~lg~~~~~~g~~~eAl~~~~ 72 (485)
+.+...|......++.+.|.+.+.+|+.+... . ..+...++.++...|++++|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455566666789999999999999987421 1 1234456777888999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011451 73 KAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 73 ~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 110 (485)
+++..+|-+..+|..+-.+++..|+..+|+..|+++.+
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987755
No 260
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=96.51 E-value=0.0024 Score=62.08 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=44.2
Q ss_pred ceeEecccCCCH-------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHH----HHhchhcCCCcEE
Q 011451 223 HFTVCGDVHGQF-------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILT----LFAFKCMCPSAIY 285 (485)
Q Consensus 223 ~~~v~GDihG~~-------------~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~----l~~lk~~~p~~v~ 285 (485)
++..++|+|... ..+.++++.+.. ...+.+++.||++|++..+.+.+.. |-.|+ ..+-.|+
T Consensus 2 kilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~-~~~~~v~ 79 (333)
T 1ii7_A 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQ-ENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPK-EHSIPVF 79 (333)
T ss_dssp EEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHH-TTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHH-TTTCCEE
T ss_pred EEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHh-cCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHH-HCCCcEE
Confidence 478899999864 233444443321 2245799999999998555444433 22232 1234699
Q ss_pred EeccCCCcc
Q 011451 286 LSRGNHESK 294 (485)
Q Consensus 286 ~lrGNHE~~ 294 (485)
++.||||..
T Consensus 80 ~v~GNHD~~ 88 (333)
T 1ii7_A 80 AIEGNHDRT 88 (333)
T ss_dssp EECCTTTCC
T ss_pred EeCCcCCCc
Confidence 999999985
No 261
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.48 E-value=0.016 Score=48.54 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=77.9
Q ss_pred HhCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011451 42 ELNSQNAVYYANRAFAHTKLEEY------GSAIQDASKAIEIDPR--------YPKGYYRRGAAYLAMGKFKEALKDFQQ 107 (485)
Q Consensus 42 ~~~p~~~~~~~~lg~~~~~~g~~------~eAl~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~ 107 (485)
-..|++++.|........+.|+. ++-++.|++|+..-|- ....|.+.|.. ...++.++|...|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 45799999999999999988998 8999999999988764 24566677754 677999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 108 VKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 108 al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++.+.... +..+++.+...+.+++..+|..++.
T Consensus 86 a~~~hKkF--AKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 86 ARANCKKF--AFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp HHHHCTTB--HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhHHH--HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99986666 5566666666788887888887777
No 262
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.79 E-value=0.2 Score=51.29 Aligned_cols=123 Identities=11% Similarity=-0.022 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE-EYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g-~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
....|...+....+.++.+.|...|++| +..+.....|...|..-...+ +.+.|...|+++++..|+.+..|...+..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3466888888888899999999999999 443346677777777776666 59999999999999999999988888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 92 YLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
....|+.+.|...|+++ +.....|..........|. .+.+...++
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~--~~~~r~v~~ 408 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS--MELFRELVD 408 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 88999999999999987 3456666666655544444 344444333
No 263
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.71 E-value=0.16 Score=52.00 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR-YPKGYYRRGA 90 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~-~~~~~~~lg~ 90 (485)
+...|..+-..+.+.|++++|.+.+++..+.. ..+...|..+-..|.+.|+.++|.+.+++..+..-. +...|..+-.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34577888889999999999999999987753 336888888999999999999999999998876322 6778888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 011451 91 AYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 91 ~~~~~g~~~eA~~~~~~al~~ 111 (485)
++.+.|+.++|.+.+++..+.
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 264
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.68 E-value=0.059 Score=55.00 Aligned_cols=78 Identities=9% Similarity=0.009 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 011451 50 YYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEK 127 (485)
Q Consensus 50 ~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 127 (485)
....+|.+......++.|..+|.+|..+.|+++..|..+|.+....|+.-+|+-+|-+++......+.+..++.....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 456788888888999999999999999999999999999999999999999999999999988888999998887763
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.38 E-value=0.19 Score=46.38 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=58.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Q 011451 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKG 84 (485)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~ 84 (485)
..+++.|+.++|++.....++.+|.++.....+-..+.-.|+++.|.+-++.+.+++|+....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 457788999999999999999999999999999999999999999999999999999986443
No 266
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.34 E-value=0.039 Score=59.09 Aligned_cols=79 Identities=9% Similarity=0.139 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 011451 30 YSQAIDLYSQAIEL--------NSQN----------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAA 91 (485)
Q Consensus 30 ~~~A~~~y~~al~~--------~p~~----------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~ 91 (485)
--+|+....++++. .+.+ ......-+.-+...|+++-|+.+.++|+...|..-..|+.|+.+
T Consensus 301 Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~v 380 (754)
T 4gns_B 301 ELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARC 380 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 44577777777642 2222 23444456667789999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 011451 92 YLAMGKFKEALKDFQQV 108 (485)
Q Consensus 92 ~~~~g~~~eA~~~~~~a 108 (485)
|..+|+|+.|+-.++.+
T Consensus 381 Yi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 381 HIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHS
T ss_pred HHHhccHHHHHHHHhcC
Confidence 99999999999887765
No 267
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=95.30 E-value=0.019 Score=57.83 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=36.1
Q ss_pred ceeEecccCCC------------HHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHH
Q 011451 223 HFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLF 274 (485)
Q Consensus 223 ~~~v~GDihG~------------~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~ 274 (485)
+++.+.|+|-. ...+.++++.+.. ...+.+|+.||++|++.-+.+++..++
T Consensus 78 rilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~-~~~D~VliaGDLfd~~~ps~~a~~~~~ 140 (472)
T 4fbk_A 78 RILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARE-RDVDMILLGGDIFHDNKPSRKALYQAL 140 (472)
T ss_dssp EEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHH-TTCSEEEECSCSBSSSSCCHHHHHHHH
T ss_pred EEEEEecccCCCcccCcccchhHHHHHHHHHHHHHh-cCCCEEEEcCccccCCCCCHHHHHHHH
Confidence 58899999964 2244555554322 234679999999999999988877554
No 268
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=95.23 E-value=0.019 Score=57.18 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=37.6
Q ss_pred CCceeEecccCCC------------HHHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHh
Q 011451 221 GKHFTVCGDVHGQ------------FYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFA 275 (485)
Q Consensus 221 ~~~~~v~GDihG~------------~~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~ 275 (485)
..+++.+.|+|-. ...+.++++.+.. ...+.+++.||++|++.-+.+++..++.
T Consensus 13 ~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~-~~~D~VliaGDLfd~~~p~~~~~~~~~~ 78 (417)
T 4fbw_A 13 TIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARE-RDVDMILLGGDIFHDNKPSRKALYQALR 78 (417)
T ss_dssp CEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHH-TTCSEEEECSCCBSSSSCCHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHh-cCCCEEEEcCccccCCCCCHHHHHHHHH
Confidence 3468999999965 2344555554322 2346799999999999999888776543
No 269
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=95.13 E-value=0.018 Score=57.55 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=49.6
Q ss_pred CceeEecccCCCH------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCChHHHHHHHHhchhc----------
Q 011451 222 KHFTVCGDVHGQF------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCM---------- 279 (485)
Q Consensus 222 ~~~~v~GDihG~~------------~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s~e~l~~l~~lk~~---------- 279 (485)
.+++.+.|+|-.. ..+.++++.+.. ...+.+++.||++|++..+.+++..++.+-..
T Consensus 33 mrilhiSDlHLg~~~~~~~~~~d~~~~l~~ll~~~~~-~~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r~~~~~~~~~~ 111 (431)
T 3t1i_A 33 FKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQE-NEVDFILLGGDLFHENKPSRKTLHTCLELLRKYCMGDRPVQF 111 (431)
T ss_dssp EEEEEECCCCBTTTSSCTTTTTHHHHHHHHHHHHHHH-TTCSEEEECSCCBSSSSCCHHHHHHHHHHHHHHHBCSSCCCC
T ss_pred EEEEEEeccCCCCcccccchhhhHHHHHHHHHHHHhh-cCCCEEEEcCccccCCCCCHHHHHHHHHHHHHHhccCCcccc
Confidence 3588999999432 244455543322 23457999999999999888877766543221
Q ss_pred --------------------------CCCcEEEeccCCCccc
Q 011451 280 --------------------------CPSAIYLSRGNHESKS 295 (485)
Q Consensus 280 --------------------------~p~~v~~lrGNHE~~~ 295 (485)
..-.|+++.||||...
T Consensus 112 ~~lsd~~~~~~~~~~~~~ny~d~n~~~~ipV~~I~GNHD~~~ 153 (431)
T 3t1i_A 112 EILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSIHGNHDDPT 153 (431)
T ss_dssp EECSCC------------------CCBCSCEEECCCSSSCCB
T ss_pred eeccchhhccccccccccccccccccCCCcEEEEccCCCCcc
Confidence 1356999999999865
No 270
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=95.06 E-value=0.0093 Score=59.05 Aligned_cols=68 Identities=21% Similarity=0.202 Sum_probs=42.9
Q ss_pred ceeEecccCCCHH----------------HHHHHHHHcCCCCCCCCeEEccccc-CCCCChHHHHHH----HHhchhcCC
Q 011451 223 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFV-DRGSFSVEVILT----LFAFKCMCP 281 (485)
Q Consensus 223 ~~~v~GDihG~~~----------------dl~~il~~~~~~~~~~~~vflGD~v-drG~~s~e~l~~----l~~lk~~~p 281 (485)
+++.++|+|.... .+.++++.+.. ...+.+|+.||++ |++..+.+.+.. |-.|+..
T Consensus 2 rilh~SD~Hlg~~~~~~~~g~~~~~~~~~~l~~l~~~~~~-~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~-- 78 (379)
T 3tho_B 2 KILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEK-REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT-- 78 (379)
T ss_dssp EEEEECCCCBTCEECSSSSCEECHHHHHHHHHHHHHHHHH-HTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH--
T ss_pred eEEEEcccCCCCCccccccCcChhHHHHHHHHHHHHHHHh-cCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC--
Confidence 4678889986543 33444433211 1235699999999 998777654443 3333322
Q ss_pred CcEEEeccCCCc
Q 011451 282 SAIYLSRGNHES 293 (485)
Q Consensus 282 ~~v~~lrGNHE~ 293 (485)
..|++++||||.
T Consensus 79 ~~v~~i~GNHD~ 90 (379)
T 3tho_B 79 APVVVLPGNQDW 90 (379)
T ss_dssp SCEEECCCTTSC
T ss_pred CCEEEEcCCCcc
Confidence 469999999994
No 271
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.05 E-value=0.4 Score=40.85 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI----------------- 77 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~----------------- 77 (485)
+.-..++-.++-.|+|..|+-.+.+ -+.+.+.+..+.||.++++|..|+.+++..++-
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 3445567788888998888876543 456778888889999999999999999998832
Q ss_pred CCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011451 78 DPRYPK-GYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 78 ~p~~~~-~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (485)
+|.+.+ .+..+|.++.+.|+-+||+.+|.......|-.+.+
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 244444 45567999999999999999999999888766553
No 272
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.03 E-value=0.29 Score=50.19 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=89.0
Q ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Q 011451 28 KKYSQAIDLYSQAIELN-SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID-PRYPKGYYRRGAAYLAMGKFKEALKDF 105 (485)
Q Consensus 28 g~~~~A~~~y~~al~~~-p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~ 105 (485)
++.++|.+.|++..+.. +.+...|..+-.+|.+.|++++|.+.+++..+.. .-+...|..+-.+|.+.|+.++|.+.|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 34788999999877653 3368889999999999999999999999988763 226788889999999999999999999
Q ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHhhhhHHHhhcCCc
Q 011451 106 QQVKKLSP-NDPDAAQKVKECEKAVKKLKFEEAIAVPE 142 (485)
Q Consensus 106 ~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~A~~~~~ 142 (485)
++..+..- -+...+..+-.++...++ .++|..+++
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~--~d~A~~ll~ 199 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKN--ADKVYKTLQ 199 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCC--HHHHHHHHH
Confidence 99887532 245556666666655554 677777766
No 273
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.091 Score=56.28 Aligned_cols=62 Identities=23% Similarity=0.227 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKA 74 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~a 74 (485)
.+..+...+..+..+|+++-|+++.++|+...|..-..|..|+.+|..+|+|+.|+-.+...
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34567778899999999999999999999999999999999999999999999998766554
No 274
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=94.57 E-value=0.037 Score=55.52 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=41.9
Q ss_pred CceeEecccCCCHHHHHHHHHHc-CCCCCCCCeEEcccccCCCCC------hHH-HHHHHHhchhcCCCcEEEeccCCCc
Q 011451 222 KHFTVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDRGSF------SVE-VILTLFAFKCMCPSAIYLSRGNHES 293 (485)
Q Consensus 222 ~~~~v~GDihG~~~dl~~il~~~-~~~~~~~~~vflGD~vdrG~~------s~e-~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (485)
-++.++||+|....... .++.. ..+...+.+|++||+++.+.. ..+ ...++-.+... --++.+.||||.
T Consensus 120 ~~f~~igD~~~~~~~~~-~l~~~~~~~~~~D~vl~~GDl~y~~~~~~~~~~~~~~~~~~l~~~~~~--~P~~~v~GNHD~ 196 (424)
T 2qfp_A 120 YTFGLIGDLGQSFDSNT-TLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAY--QPWIWTAGNHEI 196 (424)
T ss_dssp EEEEEECSCTTBHHHHH-HHHHHHTCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHHTT--SCEEECCCHHHH
T ss_pred eEEEEEEeCCCCCChHH-HHHHHHhCCCCCCEEEEcCccccccccccccchHHHHHHHHHHHHHhc--CCeEeecCCccc
Confidence 35899999998765432 33322 222245679999999986421 111 12222223222 348889999997
Q ss_pred cc
Q 011451 294 KS 295 (485)
Q Consensus 294 ~~ 295 (485)
..
T Consensus 197 ~~ 198 (424)
T 2qfp_A 197 EF 198 (424)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 275
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=94.54 E-value=0.16 Score=51.79 Aligned_cols=80 Identities=20% Similarity=0.137 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLA 94 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~ 94 (485)
..+..+|...--...+..|..+|.+|+.+.|++...++.||.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35667888888888999999999999999999999999999999999999999999999998877789999999877764
No 276
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=94.07 E-value=0.018 Score=54.78 Aligned_cols=71 Identities=17% Similarity=0.057 Sum_probs=39.3
Q ss_pred ceeEecccCCCH---------HHHHHHHHH-cCCCCCCCCeEEcccccCC-CCC---hHHHHHHHHhch---hcCCCcEE
Q 011451 223 HFTVCGDVHGQF---------YDLLNIFEL-NGLPSEENPYLFNGDFVDR-GSF---SVEVILTLFAFK---CMCPSAIY 285 (485)
Q Consensus 223 ~~~v~GDihG~~---------~dl~~il~~-~~~~~~~~~~vflGD~vdr-G~~---s~e~l~~l~~lk---~~~p~~v~ 285 (485)
+++++||+|... ..+.+.+.. .. ....+.+|++||++.. |.. ..+....+..+. ...+.-++
T Consensus 8 ~~~~isD~h~~~~~~~~~~~~~~~~~~l~~~~~-~~~~d~vv~~GD~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 86 (313)
T 1ute_A 8 RFVAVGDWGGVPNAPFHTAREMANAKAIATTVK-TLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWH 86 (313)
T ss_dssp EEEEECSCCCCSSTTSSCHHHHHHHHHHHHHHH-HHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCEE
T ss_pred EEEEEcccCCCCCccccCchHHHHHHHHHHHHH-hcCCCEEEECCCccCcCCCCCcchHHHHHHHHHHcCchhhcCCCEE
Confidence 589999999863 234343332 11 1234569999999743 211 112222221111 11145689
Q ss_pred EeccCCCcc
Q 011451 286 LSRGNHESK 294 (485)
Q Consensus 286 ~lrGNHE~~ 294 (485)
.+.||||..
T Consensus 87 ~v~GNHD~~ 95 (313)
T 1ute_A 87 VLAGNHDHL 95 (313)
T ss_dssp ECCCHHHHH
T ss_pred EECCCCccC
Confidence 999999974
No 277
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=93.89 E-value=0.059 Score=54.07 Aligned_cols=71 Identities=15% Similarity=0.032 Sum_probs=40.3
Q ss_pred CceeEecccCCCHHHHHHHHHHc-CCCCCCCCeEEcccccCC-CCC----h-HH-HHHHHHhchhcCCCcEEEeccCCCc
Q 011451 222 KHFTVCGDVHGQFYDLLNIFELN-GLPSEENPYLFNGDFVDR-GSF----S-VE-VILTLFAFKCMCPSAIYLSRGNHES 293 (485)
Q Consensus 222 ~~~~v~GDihG~~~dl~~il~~~-~~~~~~~~~vflGD~vdr-G~~----s-~e-~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (485)
-++.++||+|..... ...++.. ..+...+.+|++||+++. |.. . .+ ....+-.+.. .--++.+.||||.
T Consensus 127 ~~f~~~gD~~~~~~~-~~~l~~i~~~~~~~D~vl~~GD~~y~~~~~~~~~~~~~~~~~~l~~l~~--~~P~~~v~GNHD~ 203 (426)
T 1xzw_A 127 YVFGLIGDIGQTHDS-NTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVA--YQPWIWTAGNHEI 203 (426)
T ss_dssp EEEEEECSCTTBHHH-HHHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHT--TSCEECCCCGGGC
T ss_pred eEEEEEEeCCCCCch-HHHHHHHHhCCCCCCEEEeCCChhhcccCCcccchHHHHHHHHHHHHHh--cCCEEEecccccc
Confidence 368999999987532 2222221 122244679999999965 321 1 11 1222222322 3347889999998
Q ss_pred cc
Q 011451 294 KS 295 (485)
Q Consensus 294 ~~ 295 (485)
..
T Consensus 204 ~~ 205 (426)
T 1xzw_A 204 DY 205 (426)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.66 E-value=1.1 Score=44.14 Aligned_cols=95 Identities=15% Similarity=-0.001 Sum_probs=76.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC----ChHH
Q 011451 18 KALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIEID---PR----YPKG 84 (485)
Q Consensus 18 ~~lg~~~~~~g~~~~A~~~y~~al~~~p~------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~---p~----~~~~ 84 (485)
..+|..|+..|+|.+|++.+.+.++.... -.+.+.....+|..++++.++.+.+.+|.... +. .+..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 47899999999999999999998875322 24567778889999999999999999987653 12 2345
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 011451 85 YYRRGAAYL-AMGKFKEALKDFQQVKKLS 112 (485)
Q Consensus 85 ~~~lg~~~~-~~g~~~eA~~~~~~al~~~ 112 (485)
...-|..+. ..++|.+|..+|-.+.+..
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 566789999 8999999999999887543
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.77 Score=45.92 Aligned_cols=100 Identities=12% Similarity=-0.078 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCh----HH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIELNSQ---NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP--RYP----KG 84 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~---~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p--~~~----~~ 84 (485)
..++..+|..|++.|++++|.+.|.++...... -...+.....++...+++..+...+.++-..-. .++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 346778999999999999999999998876533 367888888999999999999999999876522 222 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011451 85 YYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
....|.++...++|.+|...|-.++....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 45567888889999999999988877644
No 280
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.10 E-value=2.6 Score=35.89 Aligned_cols=69 Identities=10% Similarity=-0.032 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h---------------CCCCHH-HHHHHHHHHHHccCHHHHHHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE--L---------------NSQNAV-YYANRAFAHTKLEEYGSAIQDASK 73 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~--~---------------~p~~~~-~~~~lg~~~~~~g~~~eAl~~~~~ 73 (485)
+.+.+.+..+.++.+.++|..|+..++..++ . +|.+.+ .+..+|..+.+.|+.+||+.++..
T Consensus 60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 3466778889999999999999999999993 2 244444 456789999999999999999999
Q ss_pred HHHhCCC
Q 011451 74 AIEIDPR 80 (485)
Q Consensus 74 al~~~p~ 80 (485)
.....|-
T Consensus 140 Sf~~~~l 146 (242)
T 3kae_A 140 SFGKSFL 146 (242)
T ss_dssp HHHHCCC
T ss_pred hcCCccc
Confidence 8877654
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.64 E-value=0.58 Score=43.22 Aligned_cols=62 Identities=18% Similarity=0.073 Sum_probs=57.9
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 011451 57 AHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDA 118 (485)
Q Consensus 57 ~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 118 (485)
.+++.|..++|++.....++.+|.+......+.+.+.-.|+|+.|.+.++.+.+++|+....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 45678999999999999999999999999999999999999999999999999999987654
No 282
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.42 E-value=0.51 Score=46.54 Aligned_cols=63 Identities=10% Similarity=-0.049 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
.++..++..+...|++++|+..+.+++..+|.+..++..+-.++...|+..+|++.|++.-+.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677888899999999999999999999999999999999999999999999999887653
No 283
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.23 E-value=1.2 Score=47.90 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=21.8
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 011451 24 AFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASK 73 (485)
Q Consensus 24 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~ 73 (485)
+...|++++|.+..+. ++ +...|..+|..+.+.++++.|+.+|.+
T Consensus 662 ~l~~~~~~~A~~~~~~---~~--~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD---ES--AEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHTCHHHHHHHHTT---CC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHh---hC--cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444555555554432 12 134555555555555555555555554
No 284
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.11 E-value=3.9 Score=40.92 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCC
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQ------NAVYYANRAFAHTKLEEYGSAIQDASKAIE---IDPRY 81 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~---~~p~~ 81 (485)
.+.+.....+|..+...|++.+|...+.......-. -...+......+...+++.+|...++++.. ..+..
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 456778889999999999999999999987643211 146778888999999999999999998742 23333
Q ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011451 82 ----PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 82 ----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
...+...|..+...++|.+|..+|..+...
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345667899999999999999999998864
No 285
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.37 E-value=4.6 Score=44.56 Aligned_cols=102 Identities=7% Similarity=-0.047 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIEL----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP-RYPKGY 85 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~----~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p-~~~~~~ 85 (485)
......+..+-+.|.+.|+.++|.+.+.+.-+. ..-+...|..+-..|.+.|+.++|.+.+++..+..- -+...|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334456888889999999999999999764322 234688999999999999999999999999887532 267788
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 011451 86 YRRGAAYLAMGK-FKEALKDFQQVKKLS 112 (485)
Q Consensus 86 ~~lg~~~~~~g~-~~eA~~~~~~al~~~ 112 (485)
..+-.++.+.|+ .++|.+.|++..+..
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 888889999998 478899999988753
No 286
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=89.72 E-value=0.094 Score=50.87 Aligned_cols=72 Identities=10% Similarity=0.052 Sum_probs=40.8
Q ss_pred ceeEecccCCCHHHHHHH---H-HHcCCCCCCCCeEEcccccCCCCChH------HHHHHHHhch-hcCCCcEEEeccCC
Q 011451 223 HFTVCGDVHGQFYDLLNI---F-ELNGLPSEENPYLFNGDFVDRGSFSV------EVILTLFAFK-CMCPSAIYLSRGNH 291 (485)
Q Consensus 223 ~~~v~GDihG~~~dl~~i---l-~~~~~~~~~~~~vflGD~vdrG~~s~------e~l~~l~~lk-~~~p~~v~~lrGNH 291 (485)
+++++||.|.....-..+ + +.+. ....+-+|++||.++.|..+. +.+.-++... ...+--++.+.|||
T Consensus 5 ~f~~igD~g~g~~~q~~va~~m~~~~~-~~~pd~vl~~GD~~y~G~~~~~d~~~~~~f~~~~~~~~~~~~~P~~~vlGNH 83 (342)
T 3tgh_A 5 RFASLGDWGKDTKGQILNAKYFKQFIK-NERVTFIVSPGSNFIDGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTR 83 (342)
T ss_dssp EEEECCSCBSCCHHHHHHHHHHHHHHH-HTTCCEEEECSCSBTTCCCSTTCTHHHHHTTTTSCCGGGTTCSEEEECCCHH
T ss_pred EEEEEecCCCCCchHHHHHHHHHHHHh-hcCCCEEEECCCcccCCCCcCccHHHHHHHHHHhhhhhhhhCCCEEEeCCCC
Confidence 589999999754322221 1 1111 123457999999998887532 2222222111 12234469999999
Q ss_pred Cccc
Q 011451 292 ESKS 295 (485)
Q Consensus 292 E~~~ 295 (485)
|...
T Consensus 84 D~~~ 87 (342)
T 3tgh_A 84 DWTG 87 (342)
T ss_dssp HHTS
T ss_pred ccCC
Confidence 9753
No 287
>3qfk_A Uncharacterized protein; structural genomics, center for structural genomics of infec diseases, csgid, phosphoesterase, hydrolase; HET: MSE AKG; 2.05A {Staphylococcus aureus subsp}
Probab=88.73 E-value=0.21 Score=51.61 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=39.4
Q ss_pred ceeEecccCCCHH----------------HHHHHHHHcCCCCCCCCeEEcccccCCCCCh----------HHHHHHHHhc
Q 011451 223 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSFS----------VEVILTLFAF 276 (485)
Q Consensus 223 ~~~v~GDihG~~~----------------dl~~il~~~~~~~~~~~~vflGD~vdrG~~s----------~e~l~~l~~l 276 (485)
+++.+.|+||++. .+..+++..........++..||.+++++.+ ..++..|-.+
T Consensus 21 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~~~~~~ln~l 100 (527)
T 3qfk_A 21 AFYVVSDVHGYIFPTDFTSRNQYQPMGLLLANHVIEQDRRQYDQSFKIDNGDFLQGSPFCNYLIAHSGSSQPLVDFYNRM 100 (527)
T ss_dssp EEEEECCCTTCCSSCCSSSTTCCCSCSHHHHHHHHHHHHTTSSEEEEEECSCCSSSSHHHHHHHHTTCSSHHHHHHHHHT
T ss_pred EEEEEeccCCCccCcccccCCCcCCCcHHHHHHHHHHHHhcCCCEEEEECCCcCCCcHHHHHHhhcccCcchHHHHHHhc
Confidence 4888999999862 4445555433222222355679999987554 2444444444
Q ss_pred hhcCCCcEEEeccCCCc
Q 011451 277 KCMCPSAIYLSRGNHES 293 (485)
Q Consensus 277 k~~~p~~v~~lrGNHE~ 293 (485)
. ++ ++..||||.
T Consensus 101 g---~D--~~t~GNHef 112 (527)
T 3qfk_A 101 A---FD--FGTLGNHEF 112 (527)
T ss_dssp C---CC--EECCCGGGG
T ss_pred C---Cc--EEecccccc
Confidence 3 23 345799994
No 288
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.30 E-value=2.1 Score=45.93 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=81.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 011451 18 KALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGK 97 (485)
Q Consensus 18 ~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 97 (485)
...+..+.+.|.+++|++..+ ++...+. .....|++++|.+..+ ..++...|..+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f~---~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKFE---LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHHH---HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhee---hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence 556667778888888886552 3433333 3467899999988753 34678899999999999999
Q ss_pred HHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHhhhhHHHhhcCC-ccccccccccccccc
Q 011451 98 FKEALKDFQQVK--------KLSPNDPDAAQKVKECEKAVKKLKFEEAIAVP-ESERHSVADSIDYQS 156 (485)
Q Consensus 98 ~~eA~~~~~~al--------~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~~-~~~~~~~a~~~~~~~ 156 (485)
++.|..+|.++- .....+.+.+..++......++ ++.|...+ ..+...+|...+.+.
T Consensus 697 ~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK--FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc--hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 999999999862 2235677766666666544433 45555433 245555555554333
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.28 E-value=3.7 Score=40.33 Aligned_cols=100 Identities=9% Similarity=0.031 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------CCCCH--------------------H-
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL----------------------NSQNA--------------------V- 49 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~----------------------~p~~~--------------------~- 49 (485)
+-.+.+.+|..|.+.|++++-.++....... -|+.. .
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999888877654321 12221 1
Q ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011451 50 ---YYANRAFAHTKLEEYGSAIQDASKAIEIDPR------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (485)
Q Consensus 50 ---~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 112 (485)
.-..+|..|+..|+|.+|++.+.+..+--.. -.+.+..-..+|..++++.++...+.+|.+..
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 1226899999999999999999988864211 14566777889999999999999999987653
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.92 E-value=0.6 Score=47.44 Aligned_cols=103 Identities=12% Similarity=0.029 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHH----------HHHHHHHHh-----CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAI----------DLYSQAIEL-----NSQ-NAVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~----------~~y~~al~~-----~p~-~~~~~~~lg~~~~~~g~~~eAl~~~~~al~ 76 (485)
.+..|+..+..+-..|+..... ..+-.+++. |+. .+..+..+-..|...+.+++|.....++.
T Consensus 180 ~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~- 258 (523)
T 4b4t_S 180 NAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE- 258 (523)
T ss_dssp -----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc-
Confidence 4556666666666666654422 223333332 222 36678888899999999999999999985
Q ss_pred hCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011451 77 IDPRY-------PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 77 ~~p~~-------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
.|.. ...++.+|.++.-+++|.+|.+++..|++..|.+..
T Consensus 259 -fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 259 -YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp -SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 4532 456777899999999999999999999999887643
No 291
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.75 E-value=1.3 Score=50.11 Aligned_cols=92 Identities=14% Similarity=0.021 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIEL-----------------------NSQNAVYYANRAFAHTKLEEYGSAIQDA 71 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~-----------------------~p~~~~~~~~lg~~~~~~g~~~eAl~~~ 71 (485)
..-|.+|.+++..|++++|.++|++|-.- ....+.+|......+.+.+.++.+++..
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34578888888888888888888876321 0112356677777777888888888888
Q ss_pred HHHHHhCCCC-h----HHHHHHHHHHHHcCCHHHHHHHHH
Q 011451 72 SKAIEIDPRY-P----KGYYRRGAAYLAMGKFKEALKDFQ 106 (485)
Q Consensus 72 ~~al~~~p~~-~----~~~~~lg~~~~~~g~~~eA~~~~~ 106 (485)
+.|++..+.+ . ..|.++-..+..+|+|++|...+.
T Consensus 923 ~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 923 LLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 8888765433 2 256667777888888888877764
No 292
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=85.82 E-value=8.4 Score=33.09 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=40.6
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011451 22 NEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 22 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
......|+++.|.+..++. ++...|..+|...+..|+++-|..+|.++-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4456788999999887664 678899999999999999999999988753
No 293
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase, structural genomics, NPPSFA; HET: THM; 1.75A {Thermus thermophilus} SCOP: d.114.1.1 d.159.1.2
Probab=85.41 E-value=0.47 Score=49.17 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=39.6
Q ss_pred ceeEecccCCCH-----------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCCh-----HHHHHHHHhchhcC
Q 011451 223 HFTVCGDVHGQF-----------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMC 280 (485)
Q Consensus 223 ~~~v~GDihG~~-----------------~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~ 280 (485)
+++.++|+||++ ..+..+++.......+..++..||++++.+.+ ..++..|-.+ .
T Consensus 31 ~Il~~~D~H~~~~~~~~~~~~~~~~~gg~~~~~~~v~~~r~~~~~~l~l~~GD~~~gs~~~~~~~~~~~~~~ln~l---g 107 (552)
T 2z1a_A 31 TLVHTNDTHAHLEPVELTLSGEKTPVGGVARRVALFDRVWARAKNPLFLDAGDVFQGTLYFNQYRGLADRYFMHRL---R 107 (552)
T ss_dssp EEEEECCCTTCCSCEEEECSSSEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHT---T
T ss_pred EEEEEcccccCcccccccCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCcHHHHHhCCcHHHHHHHhc---C
Confidence 488899999763 34555554432111122467789999977543 2344444433 3
Q ss_pred CCcEEEeccCCCcc
Q 011451 281 PSAIYLSRGNHESK 294 (485)
Q Consensus 281 p~~v~~lrGNHE~~ 294 (485)
++ +...||||..
T Consensus 108 ~d--~~~lGNHEfd 119 (552)
T 2z1a_A 108 YR--AMALGNHEFD 119 (552)
T ss_dssp CC--EEECCGGGGT
T ss_pred CC--cccccccccc
Confidence 33 4567999974
No 294
>1hp1_A 5'-nucleotidase; metallophosphatase, dinuclear, metalloenzyme, hydrolase, domain movement; HET: ATP; 1.70A {Escherichia coli} SCOP: d.114.1.1 d.159.1.2 PDB: 1ush_A 2ush_A 1hpu_A* 1ho5_A* 1oi8_A 1oid_A 1oie_A
Probab=85.01 E-value=0.32 Score=50.00 Aligned_cols=66 Identities=18% Similarity=0.106 Sum_probs=38.4
Q ss_pred ceeEecccCCCHH----------HHHHHHHHcCCC----CCCCCeEEcccccCCCCCh-----HHHHHHHHhchhcCCCc
Q 011451 223 HFTVCGDVHGQFY----------DLLNIFELNGLP----SEENPYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSA 283 (485)
Q Consensus 223 ~~~v~GDihG~~~----------dl~~il~~~~~~----~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~ 283 (485)
+++.++|+||++. .+..+++..... .....++..||+++..+.+ ..++..|-.+. ++
T Consensus 10 ~Il~~~D~H~~~~~~~~~~~G~~~~~~~v~~~r~~~~~~~~~~lvl~~GD~~~g~~~~~~~~~~~~~~~ln~lg---~d- 85 (516)
T 1hp1_A 10 TVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVG---YD- 85 (516)
T ss_dssp EEEEECCCTTCCSCCTTSCCCHHHHHHHHHHHHHHHHHHTCEEEEEECSCCSSSCHHHHTTTTHHHHHHHHHHT---CC-
T ss_pred EEEEecccccCccCCCCCCcCHHHHHHHHHHHHHhhhccCCCEEEEeCCccCCCcchhhhcCCcHHHHHHhccC---CC-
Confidence 4888999999743 344444332110 1123577889999765432 23444444443 33
Q ss_pred EEEeccCCCc
Q 011451 284 IYLSRGNHES 293 (485)
Q Consensus 284 v~~lrGNHE~ 293 (485)
++..||||.
T Consensus 86 -~~~~GNHEf 94 (516)
T 1hp1_A 86 -AMAIGNHEF 94 (516)
T ss_dssp -EEECCGGGG
T ss_pred -EEeeccccc
Confidence 556799997
No 295
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.32 E-value=7.1 Score=33.56 Aligned_cols=83 Identities=13% Similarity=-0.003 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
....|..+|...+.+|+++-|.++|.++ .+.. .+...|...|+.+.-....+.|..... +.....++
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D~~---~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~ 99 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQ-----HSFD---KLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNT 99 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT-----TCHH---HHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHh-----CCHH---HHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHH
Confidence 4568999999999999999999999985 3333 334455567887766666666655432 23334667
Q ss_pred HHcCCHHHHHHHHHHH
Q 011451 93 LAMGKFKEALKDFQQV 108 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~a 108 (485)
..+|+++++++.|.+.
T Consensus 100 l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 100 FYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHC
Confidence 7889999999888544
No 296
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.07 E-value=5.9 Score=44.82 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---C------------------
Q 011451 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI---D------------------ 78 (485)
Q Consensus 20 lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~---~------------------ 78 (485)
+...+...+.++.|.+ .+...|.++...+.+|.+++..|++++|..+|++|-.- +
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4455666777766654 34567888888899999999999999999999886311 0
Q ss_pred --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 011451 79 --PRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPND 115 (485)
Q Consensus 79 --p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 115 (485)
...+..|.....++.+.+.++.+++.-+.|++..+.+
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~ 932 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD 932 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC
Confidence 1123456677788889999999999999999987544
No 297
>4h2g_A 5'-nucleotidase; dimer, hydrolase, phosphatase, extracellular; HET: ADN; 1.55A {Homo sapiens} PDB: 4h2f_A* 4h1y_P* 4h2i_A* 4h1s_A* 4h2b_A*
Probab=80.33 E-value=1.1 Score=46.32 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=39.6
Q ss_pred ceeEecccCCCH--------------------HHHHHHHHHcCCCCCCCCeEEcccccCCCCCh-----HHHHHHHHhch
Q 011451 223 HFTVCGDVHGQF--------------------YDLLNIFELNGLPSEENPYLFNGDFVDRGSFS-----VEVILTLFAFK 277 (485)
Q Consensus 223 ~~~v~GDihG~~--------------------~dl~~il~~~~~~~~~~~~vflGD~vdrG~~s-----~e~l~~l~~lk 277 (485)
+++.+.|+||++ ..+..+++..........++..||.++..+.+ ..++..|-.+.
T Consensus 27 ~Il~~nD~Hg~~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~ln~lg 106 (546)
T 4h2g_A 27 TILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALR 106 (546)
T ss_dssp EEEEECCCTTCCSCBCTTSSBCSSGGGCBCCHHHHHHHHHHHHHHCSSEEEEECSCCSSSSHHHHHHTTHHHHHHHHHHT
T ss_pred EEEEecccccCCcccccccccccccccccCCHHHHHHHHHHHHhhCCCEEEEECCccCCCchhhhhhCChHHHHHHHhcC
Confidence 488899999864 44455554432111223577789999987643 33444444443
Q ss_pred hcCCCcEEEeccCCCc
Q 011451 278 CMCPSAIYLSRGNHES 293 (485)
Q Consensus 278 ~~~p~~v~~lrGNHE~ 293 (485)
++ ++..||||.
T Consensus 107 ---~d--~~~~GNHEf 117 (546)
T 4h2g_A 107 ---YD--AMALGNHEF 117 (546)
T ss_dssp ---CS--EEECCGGGG
T ss_pred ---Cc--EEeccCccc
Confidence 33 355799996
No 298
>3ztv_A NAD nucleotidase, NADN; hydrolase, NAD pyrophosphatase, NMN nucleotidase, periplasmi enzyme, CD73; HET: ADN; 1.30A {Haemophilus influenzae} PDB: 3zu0_A*
Probab=78.19 E-value=1.4 Score=45.89 Aligned_cols=66 Identities=15% Similarity=0.054 Sum_probs=37.5
Q ss_pred ceeEecccCCCHHH---------------------HHHHHHHcCCCCCCCCeEEcccccCCCCC-----hHHHHHHHHhc
Q 011451 223 HFTVCGDVHGQFYD---------------------LLNIFELNGLPSEENPYLFNGDFVDRGSF-----SVEVILTLFAF 276 (485)
Q Consensus 223 ~~~v~GDihG~~~d---------------------l~~il~~~~~~~~~~~~vflGD~vdrG~~-----s~e~l~~l~~l 276 (485)
+++.+.|+||++.. +..+++..........++..||.++..+. ...++..|-.+
T Consensus 14 ~Il~tnD~Hg~~~~~~~~~~~~~~~~~~~~gG~arla~~i~~~r~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~l 93 (579)
T 3ztv_A 14 SILHINDHHSYLEPHETRINLNGQQTKVDIGGFSAVNAKLNKLRKKYKNPLVLHAGDAITGTLYFTLFGGSADAAVMNAG 93 (579)
T ss_dssp EEEEECCCTTCCSCEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHSSSEEEEECSCCSCSSHHHHTTTTHHHHHHHHHH
T ss_pred EEEEeCccccCccCCccccccCCcccccccCCHHHHHHHHHHHHhhCCCEEEEeCCCCCCCceeeeecCCHHHHHHHHhc
Confidence 48889999988533 34444432211122346778999986532 23344444444
Q ss_pred hhcCCCcEEEeccCCCc
Q 011451 277 KCMCPSAIYLSRGNHES 293 (485)
Q Consensus 277 k~~~p~~v~~lrGNHE~ 293 (485)
. ++- +..||||.
T Consensus 94 g---~D~--~tlGNHEf 105 (579)
T 3ztv_A 94 N---FHY--FTLGNHEF 105 (579)
T ss_dssp T---CSE--EECCSGGG
T ss_pred C---cCe--eecccccc
Confidence 3 332 45799995
No 299
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.50 E-value=3.5 Score=41.08 Aligned_cols=66 Identities=8% Similarity=-0.045 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 011451 47 NAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPR---YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS 112 (485)
Q Consensus 47 ~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 112 (485)
-..++..+|..|.+.|++++|.+.|.++...... ....++....++...++|..+...++++....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI 198 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 3567889999999999999999999998876443 35778888899999999999999999997763
No 300
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=75.17 E-value=2.5 Score=31.47 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~ 42 (485)
..+.+-.+...|...-+.|+|++|+.+|.++++
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345566667777777777777777777777665
No 301
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=71.57 E-value=1.6 Score=40.70 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=39.9
Q ss_pred ceeEecccCCCHH--HHHHHHHHcCCCCCCCCeEEcccccCCC-CChHHHHHHHHhchhcCCCcEEEeccCCCcccc
Q 011451 223 HFTVCGDVHGQFY--DLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESKSM 296 (485)
Q Consensus 223 ~~~v~GDihG~~~--dl~~il~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~~ 296 (485)
++..+||+||..- .+...++........+.++..||-.--| +.+..+...|..+.. .+.- .||||...-
T Consensus 6 ~ilf~GDv~G~~G~~~l~~~l~~lr~~~~~d~vi~Ngen~~gG~g~~~~~~~~ln~~G~----Da~T-lGNHefD~g 77 (281)
T 1t71_A 6 KFIFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGV----NYIT-MGNHTWFQK 77 (281)
T ss_dssp EEEEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTC----CEEE-CCTTTTCCG
T ss_pred EEEEECCcCChHHHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCcCHHHHHHHHhcCC----CEEE-EccCcccCC
Confidence 5899999998742 2222333221111124577777666545 456677777777652 3333 499997544
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=70.43 E-value=26 Score=38.62 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=71.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC--------------------
Q 011451 20 LANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIE-ID-------------------- 78 (485)
Q Consensus 20 lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~-~~-------------------- 78 (485)
+...+...+.++-|.+ .+...|.++..-+-+|.+++..|++++|..+|++|-. +.
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 5566777788776544 4567788888889999999999999999999987642 11
Q ss_pred CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Q 011451 79 PR--YPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS-PNDPD 117 (485)
Q Consensus 79 p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~ 117 (485)
+. ....|.....++...+-++-++...+.|++.. ++++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 11 12356677889999999999999999999865 45554
No 303
>2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A
Probab=69.54 E-value=1.7 Score=44.96 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=22.9
Q ss_pred CeEEcccccCCCCCh-----HHHHHHHHhchhcCCCcEEEeccCCCc
Q 011451 252 PYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHES 293 (485)
Q Consensus 252 ~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~lrGNHE~ 293 (485)
.++..||++++.+.+ ..++.+|-.+. + + + +. ||||.
T Consensus 126 Lll~~GD~~~gs~~~~~~~g~~~~~~ln~lg--~-d-~-~~-GNHEf 166 (562)
T 2wdc_A 126 LVLDGGDTWTNSGLSLLTRGEAVVRWQNLVG--V-D-H-MV-SHWEW 166 (562)
T ss_dssp EEEECSCCSSSSHHHHHHTTHHHHHHHHHHT--C-C-E-EC-CSGGG
T ss_pred EEEeCCCCCCcchhhhhhCCHHHHHHHHhhC--C-c-E-Ee-cchhc
Confidence 577789999976543 24445554443 2 2 3 46 99996
No 304
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.02 E-value=8.3 Score=39.12 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=60.2
Q ss_pred CchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011451 9 SSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQN-------AVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (485)
Q Consensus 9 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~-------~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~ 81 (485)
+...++..+..+-+.|...+.|++|.....++. .|.. ...++.+|.++.-.++|.+|.+++..|++..|.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 345677888889999999999999999999984 4432 5667788999999999999999999999988764
No 305
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=68.95 E-value=2.5 Score=40.73 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=24.6
Q ss_pred ceeEecccCCCHH----------------HHHHHHHHcCCCCCCCCeEEcccccCCCCC
Q 011451 223 HFTVCGDVHGQFY----------------DLLNIFELNGLPSEENPYLFNGDFVDRGSF 265 (485)
Q Consensus 223 ~~~v~GDihG~~~----------------dl~~il~~~~~~~~~~~~vflGD~vdrG~~ 265 (485)
+++...|+||++. .+..+++..........++..||.+...+.
T Consensus 13 ~Il~tnD~Hg~~~~~~~~~~~~~~~gG~ar~at~i~~~r~~~~~~llld~GD~~qGs~~ 71 (341)
T 3gve_A 13 SILATTDIHANMMDYDYYSDKETADFGLARTAQLIQKHREQNPNTLLVDNGDLIQGNPL 71 (341)
T ss_dssp EEEEECCCTTCCSSEETTTTEECSSCCHHHHHHHHHHHHHHCSSEEEEECSCCSCSSHH
T ss_pred EEEEEeccCCCccCccccCCCccccCCHHHHHHHHHHHHhcCCCEEEEecCccCCCcHH
Confidence 3788899999863 333444332211122345668999975543
No 306
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A*
Probab=68.59 E-value=2.2 Score=43.55 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=18.2
Q ss_pred HHHHHH-CCCcEEEeeccccccCcEEecCCeE
Q 011451 399 KRFLQD-NSLDLVVRSHEVKDEGYEIEHDGKL 429 (485)
Q Consensus 399 ~~fl~~-~~~~~iir~h~~~~~G~~~~~~~~~ 429 (485)
.++.+. .++++||-||+-....+....++.+
T Consensus 217 ~~la~~~~giDlIlgGHtH~~~~~~~~~~~~~ 248 (509)
T 3ive_A 217 IQTASQVKGLDILITGHAHVGTPEPIKVGNTL 248 (509)
T ss_dssp HHHHHHCSSCCEEEEESSCCCCSSCEEETTEE
T ss_pred HHHHhcCCCCcEEEeCCcCccCCCCeeeCCEE
Confidence 344444 5799999999965333323335543
No 307
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=67.29 E-value=20 Score=29.50 Aligned_cols=79 Identities=10% Similarity=-0.027 Sum_probs=52.9
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 011451 28 KKYSQAIDLYSQAIELNSQNAVYYANRA-FAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKEALKDFQ 106 (485)
Q Consensus 28 g~~~~A~~~y~~al~~~p~~~~~~~~lg-~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 106 (485)
++...-+..|-+. +..+ + +..+| ..+..+|+-++-.+.+...+.-++-++..+..+|.+|.+.|+..+|.+.+.
T Consensus 75 ~NlKrVi~C~~~~---n~~s-e-~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 75 QNLKSVVECGVIN---NTLN-E-HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp SCTHHHHHHHHHT---TCCC-H-HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcHHHHHHHHHHh---cchH-H-HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 4555566666542 2222 2 22333 344567777777777776666666778999999999999999999999999
Q ss_pred HHHHh
Q 011451 107 QVKKL 111 (485)
Q Consensus 107 ~al~~ 111 (485)
+|.+.
T Consensus 150 ~AC~k 154 (172)
T 1wy6_A 150 EACKK 154 (172)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88874
No 308
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=67.28 E-value=12 Score=32.86 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=34.7
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIELNSQNA 48 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~ 48 (485)
-+..+.+...|.+|..++.+++|.+|.+.+.+|++..|...
T Consensus 8 ~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 8 YSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 34567788899999999999999999999999999988764
No 309
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=67.25 E-value=3.2 Score=39.96 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=11.6
Q ss_pred HHCCCcEEEeeccc
Q 011451 403 QDNSLDLVVRSHEV 416 (485)
Q Consensus 403 ~~~~~~~iir~h~~ 416 (485)
+--+++.||-||+-
T Consensus 231 ~v~gID~IlgGHsH 244 (339)
T 3jyf_A 231 QVPGVDAIMFGHAH 244 (339)
T ss_dssp TSTTCCEEEECSSC
T ss_pred hCCCCCEEEeCCCc
Confidence 34689999999984
No 310
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=66.82 E-value=23 Score=29.06 Aligned_cols=115 Identities=7% Similarity=0.011 Sum_probs=69.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-----------HHHHHHHHH---------ccCHHHHHHHHHHHHHhC
Q 011451 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY-----------ANRAFAHTK---------LEEYGSAIQDASKAIEID 78 (485)
Q Consensus 19 ~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~-----------~~lg~~~~~---------~g~~~eAl~~~~~al~~~ 78 (485)
..|......|..++.++...+...-.+-...-| ..+-.++-. -|+....+.+|-+ .+
T Consensus 12 meAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~---~n 88 (172)
T 1wy6_A 12 MDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVI---NN 88 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHH---TT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHH---hc
Confidence 446677778888999988888877554321111 112223222 3456667777743 33
Q ss_pred CCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhHHHhhcC
Q 011451 79 PRYPKGYYRRG-AAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKLKFEEAIAV 140 (485)
Q Consensus 79 p~~~~~~~~lg-~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~A~~~ 140 (485)
..+ +. ..+| ..+..+|+-++--+.+...+...+-+|+.+..++.+|..++.. .+|..+
T Consensus 89 ~~s-e~-vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~--r~a~eL 147 (172)
T 1wy6_A 89 TLN-EH-VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDE--RDATTL 147 (172)
T ss_dssp CCC-HH-HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred chH-HH-HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcch--hhHHHH
Confidence 333 22 3333 4566788888877777776666777788899999998888764 444443
No 311
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.78 E-value=14 Score=38.59 Aligned_cols=114 Identities=9% Similarity=-0.090 Sum_probs=56.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 011451 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYY----ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAY 92 (485)
Q Consensus 17 ~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~----~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~ 92 (485)
....+.......+.+.|...+.+.-+...-+.... ..+|.-+...+...++...+.++....+++.......+.++
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al 296 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH
Confidence 44455555555677777777766654333222221 12222222233244555566655544333333333334433
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Q 011451 93 LAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKK 131 (485)
Q Consensus 93 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 131 (485)
..|+++.|...|++.-....+.+...+.++.++...|+
T Consensus 297 -r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~ 334 (618)
T 1qsa_A 297 -GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR 334 (618)
T ss_dssp -HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC
T ss_pred -HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC
Confidence 45777777777655433222345556677766655554
No 312
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=65.35 E-value=10 Score=27.98 Aligned_cols=31 Identities=35% Similarity=0.383 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~ 42 (485)
+.+-.+...|...-+.|+|++|+.+|.++++
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455566666666777777777776666654
No 313
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.95 E-value=26 Score=36.53 Aligned_cols=94 Identities=11% Similarity=-0.029 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 011451 16 ELKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAM 95 (485)
Q Consensus 16 ~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~ 95 (485)
.+..+|..+...+...++...+.++.....+ .....-++...++.|+++.|...+++.-..........|=+|.++..+
T Consensus 254 ~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~ 332 (618)
T 1qsa_A 254 LRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLER 332 (618)
T ss_dssp HHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHc
Confidence 3444444455555455677777776654443 333444444556779999999999775543334577778899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 011451 96 GKFKEALKDFQQVKK 110 (485)
Q Consensus 96 g~~~eA~~~~~~al~ 110 (485)
|+.++|...|+++.+
T Consensus 333 g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 333 GREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999999875
No 314
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 1.90A {Candida albicans} SCOP: d.114.1.1 d.159.1.2
Probab=64.54 E-value=2.5 Score=43.69 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=37.2
Q ss_pred ceeEecccCCCHH-------------HHHH---HHHHcC-CCCCCCCeEEcccccCCCCCh-------HHHHHHHHhchh
Q 011451 223 HFTVCGDVHGQFY-------------DLLN---IFELNG-LPSEENPYLFNGDFVDRGSFS-------VEVILTLFAFKC 278 (485)
Q Consensus 223 ~~~v~GDihG~~~-------------dl~~---il~~~~-~~~~~~~~vflGD~vdrG~~s-------~e~l~~l~~lk~ 278 (485)
+++.++|+||++. .+.+ .++... -...+..++..||.++..+.+ ..++..|-.+.
T Consensus 17 ~ILhtnD~Hg~~~~~~~~~~~~~~~Gg~a~l~~~i~~~~~~~~~~~LlldaGD~~~Gs~~~~~~~~~g~~~~~~ln~lg- 95 (557)
T 3c9f_A 17 NFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGLSDITSPNGLKSTPIFIKQD- 95 (557)
T ss_dssp EEEEECCCTTCTTCCSSCGGGCCCHHHHHHHHHHHHHHHHHTTCEEEEEECSCCCSSCHHHHSSSSTTTTTHHHHTTSC-
T ss_pred EEEEEcccccCccCcccccccccccchHHHHHHHHHHHHHhcCCCEEEEecCCCCCCccchhhcccCCHHHHHHHHhcC-
Confidence 5888999999752 2333 333211 011122367789999764422 23444444443
Q ss_pred cCCCcEEEeccCCCccc
Q 011451 279 MCPSAIYLSRGNHESKS 295 (485)
Q Consensus 279 ~~p~~v~~lrGNHE~~~ 295 (485)
++ ++..||||...
T Consensus 96 --~D--a~tlGNHEfD~ 108 (557)
T 3c9f_A 96 --YD--LLTIGNHELYL 108 (557)
T ss_dssp --CS--EECCCGGGSSS
T ss_pred --CC--EEeecchhccc
Confidence 23 34569999853
No 315
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=63.28 E-value=13 Score=39.14 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=22.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 011451 17 LKALANEAFRAKKYSQAIDLYSQAIELNSQNAVYYANRAFAHTKLE 62 (485)
Q Consensus 17 ~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g 62 (485)
....|..++..|+|+-|.+..+.++..+|++..+...+|.+|.++|
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555554444333
No 316
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=60.24 E-value=28 Score=24.95 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 011451 86 YRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQ 120 (485)
Q Consensus 86 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 120 (485)
..+|..+...|++++|..+|-+|+...|+=.+...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34677788888888888888888888777555443
No 317
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=59.97 E-value=14 Score=27.42 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~ 43 (485)
..+..+...|...-..|+|++|+.+|..|++.
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666667777777777777777776653
No 318
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=59.69 E-value=57 Score=36.14 Aligned_cols=81 Identities=14% Similarity=-0.038 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 011451 49 VYYANRAFAHTKLEEYGSAIQDASKAIEI----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLS--PNDPDAAQKV 122 (485)
Q Consensus 49 ~~~~~lg~~~~~~g~~~eAl~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l 122 (485)
..+..+-..|.+.|+.++|.+.+.+.-+. -.-+...|..+-..|.+.|+.++|.+.|++..+.. | |...+..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 35778888999999999999999765432 23367899999999999999999999999998753 4 34445555
Q ss_pred HHHHHHHh
Q 011451 123 KECEKAVK 130 (485)
Q Consensus 123 ~~~~~~~~ 130 (485)
-.++...+
T Consensus 207 I~glcK~G 214 (1134)
T 3spa_A 207 LQCMGRQD 214 (1134)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhCC
Confidence 44554444
No 319
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=59.51 E-value=22 Score=25.56 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=21.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 011451 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNAVY 50 (485)
Q Consensus 19 ~lg~~~~~~g~~~~A~~~y~~al~~~p~~~~~ 50 (485)
.+|..+...|++++|+.++-+|+...|.-...
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 45666777777777777777777776664443
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=56.93 E-value=22 Score=39.17 Aligned_cols=69 Identities=13% Similarity=0.027 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C--------------------CC--CHHHHHHHHHHHHHccCHHHHHHH
Q 011451 14 AEELKALANEAFRAKKYSQAIDLYSQAIEL-N--------------------SQ--NAVYYANRAFAHTKLEEYGSAIQD 70 (485)
Q Consensus 14 a~~~~~lg~~~~~~g~~~~A~~~y~~al~~-~--------------------p~--~~~~~~~lg~~~~~~g~~~eAl~~ 70 (485)
+..-|-+|.++...|++++|.++|++|-.- . +. ...+|......+.+.+.++.++..
T Consensus 840 ~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~f 919 (950)
T 4gq2_M 840 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 919 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 445589999999999999999999986521 0 01 134788889999999999999999
Q ss_pred HHHHHHhC-CCCh
Q 011451 71 ASKAIEID-PRYP 82 (485)
Q Consensus 71 ~~~al~~~-p~~~ 82 (485)
.+.|++.- +++.
T Consensus 920 A~lAI~~~~~dd~ 932 (950)
T 4gq2_M 920 SLLADASKETDDE 932 (950)
T ss_dssp HHHHHHTCCSCCH
T ss_pred HHHHHhhcccCCc
Confidence 99999754 4444
No 321
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=56.51 E-value=20 Score=26.49 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=25.3
Q ss_pred chhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 10 SVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (485)
Q Consensus 10 ~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~ 43 (485)
..+.+..+...|...-..|+|++|+.+|..+++.
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777777787777888888888888777763
No 322
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=54.41 E-value=20 Score=27.05 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQAIE 42 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~ 42 (485)
.+.+-.+...|...-..|+|++|+.+|..+++
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555566667777777777777777666665
No 323
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=53.73 E-value=1.4e+02 Score=28.56 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC
Q 011451 47 NAVYYANRAFAHTKLE--EYGSAIQDASKAIEI-----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SP 113 (485)
Q Consensus 47 ~~~~~~~lg~~~~~~g--~~~eAl~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p 113 (485)
.+.+.-+||.+-...- ....++..|.+|+.. .......|..+|-.+++.+++.+|+.++..|-.. ..
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~r 333 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSK 333 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCG
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 4555555555433211 112367777777754 3456788889999999999999999999888764 34
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHhhc
Q 011451 114 NDPDAAQKVKECEKAVKKLKFEEAIA 139 (485)
Q Consensus 114 ~~~~~~~~l~~~~~~~~~~~~~~A~~ 139 (485)
+|.+.+..+-.+-..+--.-+.+|..
T Consensus 334 eDeEIYKEf~eIAneliP~~~k~a~~ 359 (472)
T 3re2_A 334 DDEEMYKEFHEIANDLIPNILKDAVA 359 (472)
T ss_dssp GGHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhhHHHHhhhh
Confidence 55666666655543333222344444
No 324
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=52.33 E-value=30 Score=25.94 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011451 11 VSRAEELKALANEAFRAKKYSQAIDLYSQA 40 (485)
Q Consensus 11 ~~~a~~~~~lg~~~~~~g~~~~A~~~y~~a 40 (485)
...|..+-.+|..+.+.|+|++||++.++|
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 334455555556666666666665555444
No 325
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.15 E-value=1.1e+02 Score=30.20 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=56.4
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIE---LNSQN----AVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~---~~p~~----~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
.+.....+.+....+.+...+|+.+|...++++.. ..+.. ...+...|..+...++|.+|-.+|..+...
T Consensus 171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34566788999999999999999999999998743 23333 345677889999999999999999988764
No 326
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=51.83 E-value=1.8e+02 Score=28.41 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCchhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC
Q 011451 8 NSSVSRAEELKALANEAFRAKK---YSQAIDLYSQAIELNSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-----DP 79 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~y~~al~~~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~-----~p 79 (485)
.+..+-+.....+=..++..|. |..|+-.+-..-++.|.. |+ ..++..|.+|+.. ..
T Consensus 251 tds~el~~LQq~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~--------------gr-~~~~~L~~~AI~sa~~~Y~n 315 (550)
T 3u84_A 251 TDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTP--------------GR-PDPLTLYHKGIASAKTYYRD 315 (550)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT--------------TC-CCHHHHHHHHHHHHHHHSTT
T ss_pred ccHHHHHHHHHHHHHHHHhccchhhCchhhcchhhHhhcCCCC--------------CC-CCHHHHHHHHHHHHHHHhcc
Confidence 3344444444455555555553 344444444444444331 11 1356666666643 44
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH
Q 011451 80 RYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECE 126 (485)
Q Consensus 80 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~~ 126 (485)
.....|..+|-.+++.+++.+|+.++..|-.. ..+|.+.+..+-.+-
T Consensus 316 ~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 368 (550)
T 3u84_A 316 EHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVA 368 (550)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred CCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH
Confidence 56788899999999999999999999888764 345666666655544
No 327
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=51.79 E-value=21 Score=28.29 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAI 41 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al 41 (485)
+.+..+...|...-..++|++|+.+|..|+
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344445555555555555555555554444
No 328
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=51.53 E-value=24 Score=26.48 Aligned_cols=29 Identities=28% Similarity=0.123 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 011451 48 AVYYANRAFAHTKLEEYGSAIQDASKAIE 76 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~ 76 (485)
+..+..+|..+...|+|++|+++.++|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44556677778888888888877777653
No 329
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=50.32 E-value=38 Score=33.73 Aligned_cols=87 Identities=10% Similarity=-0.041 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHhCCCC------------H----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C--------Ch
Q 011451 29 KYSQAIDLYSQAIELNSQN------------A----VYYANRAFAHTKLEEYGSAIQDASKAIEIDP--R--------YP 82 (485)
Q Consensus 29 ~~~~A~~~y~~al~~~p~~------------~----~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p--~--------~~ 82 (485)
..++|.....++....-++ - ....++-.+|++.++..-|...++..-...+ . -.
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4567777788877763211 1 1233456789999999888877765433322 1 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 011451 83 KGYYRRGAAYLAMGKFKEALKDFQQVKKL-SPND 115 (485)
Q Consensus 83 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~-~p~~ 115 (485)
..+|.+|..+...++|.+|.+++..|++. .|.+
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 56788999999999999999999999999 8865
No 330
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=50.23 E-value=91 Score=27.17 Aligned_cols=78 Identities=5% Similarity=-0.133 Sum_probs=57.8
Q ss_pred HHHHHHHHhC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHH
Q 011451 35 DLYSQAIELN---------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEID--PRYPKGYYRRGAAYLAMGKFKEALK 103 (485)
Q Consensus 35 ~~y~~al~~~---------p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~eA~~ 103 (485)
..++++++.. |....+|...+..+ ..+...++.+.|....... ...+..|...|..+...|++++|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777777642 33356677777654 2333668888888877654 4567788889999999999999999
Q ss_pred HHHHHHHhCC
Q 011451 104 DFQQVKKLSP 113 (485)
Q Consensus 104 ~~~~al~~~p 113 (485)
.|+.+++..-
T Consensus 137 Vy~~GI~~~A 146 (202)
T 3esl_A 137 LLELGAENNC 146 (202)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998653
No 331
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=50.04 E-value=1.7e+02 Score=27.64 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQA 40 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~a 40 (485)
+.-+.+..+++-|.++++|++|++++-..
T Consensus 33 EAHQ~~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 33 EAAQETRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 33456777788888888998888875443
No 332
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=48.95 E-value=1.7e+02 Score=27.32 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 011451 81 YPKGYYRRGAAYLAMGKFKEALKDFQ 106 (485)
Q Consensus 81 ~~~~~~~lg~~~~~~g~~~eA~~~~~ 106 (485)
++..+..+|..|...+++.+|..+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56777888888888888888887773
No 333
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.24 E-value=1.4e+02 Score=25.99 Aligned_cols=71 Identities=6% Similarity=-0.033 Sum_probs=55.0
Q ss_pred CCchhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 011451 8 NSSVSRAEELKALANEAFRAKKYSQAIDLYSQAIEL--NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEIDP 79 (485)
Q Consensus 8 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~--~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p 79 (485)
.+++.-...|...+..+ ..+...++.+.|.-.... .-..+..|...|..+...|++++|.+.|+.+++...
T Consensus 74 kND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 74 RNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34566667777777765 234466778887776654 567799999999999999999999999999998754
No 334
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=47.15 E-value=1.2e+02 Score=25.33 Aligned_cols=56 Identities=7% Similarity=-0.092 Sum_probs=27.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHH-H--HHHHHHcCCHHHHHHHHHHHHH
Q 011451 55 AFAHTKLEEYGSAIQDASKAIEIDPRY------PKGYYR-R--GAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 55 g~~~~~~g~~~eAl~~~~~al~~~p~~------~~~~~~-l--g~~~~~~g~~~eA~~~~~~al~ 110 (485)
|..++..|+|=+|-+.++.+....+.. ...+.+ + |..+.+.|+..-|...+.+++.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444455555555555555443332 122222 2 3334455666666666666665
No 335
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=46.47 E-value=2.2e+02 Score=27.83 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHH
Q 011451 66 SAIQDASKAIEI-----DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKL------SPNDPDAAQKVKECEKA 128 (485)
Q Consensus 66 eAl~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~p~~~~~~~~l~~~~~~ 128 (485)
.+++.|.+|+.. .......|..+|-.+++.+++.+|+..+..|-.. ..+|.+.+..+..+...
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIane 355 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVAND 355 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHH
Confidence 455666776653 3456788889999999999999999999988763 45677777666555433
No 336
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=46.19 E-value=33 Score=36.08 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=24.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 011451 51 YANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMG 96 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g 96 (485)
....|...+..|+|..|.+....++..+|++..+...++.+|.++|
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555555555544
No 337
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=45.36 E-value=51 Score=28.76 Aligned_cols=33 Identities=18% Similarity=-0.048 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 011451 49 VYYANRAFAHTKLEEYGSAIQDASKAIEIDPRY 81 (485)
Q Consensus 49 ~~~~~lg~~~~~~g~~~eAl~~~~~al~~~p~~ 81 (485)
...+.+|..++..++|.+|.+++.+|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 345556666666666666666666666665544
No 338
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO berkeley structural genomics center, BSGC, PSI, protein STR initiative; 2.30A {Deinococcus radiodurans} SCOP: d.159.1.9
Probab=43.86 E-value=24 Score=32.14 Aligned_cols=65 Identities=18% Similarity=0.101 Sum_probs=39.7
Q ss_pred ceeEecccCCCH--HHHHHHHHHcCCCCCCCCeEEcccccCCC-CChHHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011451 223 HFTVCGDVHGQF--YDLLNIFELNGLPSEENPYLFNGDFVDRG-SFSVEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 223 ~~~v~GDihG~~--~dl~~il~~~~~~~~~~~~vflGD~vdrG-~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
++..+||+=|+. ..+...++...... +.++..|+-.--| +.+.+....|..+.. .+.. .||||..
T Consensus 2 ~ilf~GDv~g~~G~~~~~~~l~~lr~~~--d~vi~nge~~~~G~g~~~~~~~~l~~~G~----Da~T-lGNHefD 69 (255)
T 1t70_A 2 RVLFIGDVFGQPGRRVLQNHLPTIRPQF--DFVIVNMENSAGGFGMHRDAARGALEAGA----GCLT-LGNHAWH 69 (255)
T ss_dssp EEEEECCBBHHHHHHHHHHHHHHHGGGC--SEEEEECTBTTTTSSCCHHHHHHHHHHTC----SEEE-CCTTTTS
T ss_pred EEEEEeccCChHHHHHHHHHHHHHHhhC--CEEEECCCCccCCcCCCHHHHHHHHhCCC----CEEE-ecccccc
Confidence 478899997754 34444555443222 4566666555445 456667777766652 3333 4999986
No 339
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=43.81 E-value=28 Score=25.32 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 13 RAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (485)
Q Consensus 13 ~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~ 43 (485)
.......+|+.+...|+|+.|+.+|+.+++.
T Consensus 11 ~i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 11 MIVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3455677888888888999998888888763
No 340
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=41.59 E-value=33 Score=25.98 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=22.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 011451 19 ALANEAFRAKKYSQAIDLYSQAIELNSQNA 48 (485)
Q Consensus 19 ~lg~~~~~~g~~~~A~~~y~~al~~~p~~~ 48 (485)
.+|..+...|+++.|+.+|-+|+...|.-.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 567777888888888888888888777633
No 341
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.87 E-value=1.1e+02 Score=25.53 Aligned_cols=62 Identities=5% Similarity=0.081 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHH------HHHHccCHHHHHHHHHHHHH
Q 011451 15 EELKALANEAFRAKKYSQAIDLYSQAIELNSQN---AVYYANRAF------AHTKLEEYGSAIQDASKAIE 76 (485)
Q Consensus 15 ~~~~~lg~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~lg~------~~~~~g~~~eAl~~~~~al~ 76 (485)
..-+..|..++..|+|=+|-+.++.+....+.. ...|..+.+ .+.+.|+..-|...+.+|+.
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344677888888899999999999888876544 223333332 23345556555555555443
No 342
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=39.27 E-value=67 Score=23.86 Aligned_cols=32 Identities=25% Similarity=0.517 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 12 SRAEELKALANEAFRAKKYSQAIDLYSQAIEL 43 (485)
Q Consensus 12 ~~a~~~~~lg~~~~~~g~~~~A~~~y~~al~~ 43 (485)
+.++.+...|..+++.++|.+|...++++..+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 45666666677777777777777777776654
No 343
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=39.26 E-value=18 Score=36.89 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=21.9
Q ss_pred CeEEcccccCCCCCh-----HHHHHHHHhchhcCCCcEEEeccCCCcc
Q 011451 252 PYLFNGDFVDRGSFS-----VEVILTLFAFKCMCPSAIYLSRGNHESK 294 (485)
Q Consensus 252 ~~vflGD~vdrG~~s-----~e~l~~l~~lk~~~p~~v~~lrGNHE~~ 294 (485)
.++..||.+...+.+ ..++.++-.+.. + .+..||||..
T Consensus 54 llldaGD~~qGs~~~~~~~g~~~i~~mN~lgy---D--a~~lGNHEFd 96 (530)
T 4h1s_A 54 LLLDAGDQYQGTIWFTVYKGAEVAHFMNALRY---D--AMALGNHEFD 96 (530)
T ss_dssp EEEECSCCSCSSHHHHHHTTHHHHHHHHHTTC---C--EEECCGGGGT
T ss_pred EEEEeCCcccchHHHHHhCChHHHHHHhccCC---C--EEEEchhhhc
Confidence 466679999865432 234444444431 2 2346999973
No 344
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=38.34 E-value=48 Score=25.10 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 011451 87 RRGAAYLAMGKFKEALKDFQQVKKLSPNDPD 117 (485)
Q Consensus 87 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~ 117 (485)
.+|..+...|+++.|+.+|-+|+...|+=.+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 4667777777777777777777776665333
No 345
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=35.98 E-value=34 Score=31.11 Aligned_cols=66 Identities=15% Similarity=0.046 Sum_probs=40.2
Q ss_pred ceeEecccCCC--HHHHHHHHHHcCCCCCCCCeEEcc-cccCCCCChHHHHHHHHhchhcCCCcEEEeccCCCccc
Q 011451 223 HFTVCGDVHGQ--FYDLLNIFELNGLPSEENPYLFNG-DFVDRGSFSVEVILTLFAFKCMCPSAIYLSRGNHESKS 295 (485)
Q Consensus 223 ~~~v~GDihG~--~~dl~~il~~~~~~~~~~~~vflG-D~vdrG~~s~e~l~~l~~lk~~~p~~v~~lrGNHE~~~ 295 (485)
++..+||+=|+ ...+...+....... +.+++.| |....-..+.+....|..+.. .+. -.||||...
T Consensus 2 ~ilfiGDi~g~~G~~~v~~~l~~lr~~~--d~vi~ngen~~~G~g~~~~~~~~l~~~G~----D~~-T~GNHefD~ 70 (252)
T 2z06_A 2 RVLFIGDVMAEPGLRAVGLHLPDIRDRY--DLVIANGENAARGKGLDRRSYRLLREAGV----DLV-SLGNHAWDH 70 (252)
T ss_dssp EEEEECCBCHHHHHHHHHHHHHHHGGGC--SEEEEECTTTTTTSSCCHHHHHHHHHHTC----CEE-ECCTTTTSC
T ss_pred EEEEEEecCCcccHHHHHHHHHHHHhhC--CEEEEeCCCccCCCCcCHHHHHHHHhCCC----CEE-EeccEeeEC
Confidence 47889999664 445555665544333 4455555 655433456777777777652 333 349999865
No 346
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=40.26 E-value=8.6 Score=40.59 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=23.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 011451 52 ANRAFAHTKLEEYGSAIQDASKAIEIDPRYPKGYYRRGAAYLAMGKFKE 100 (485)
Q Consensus 52 ~~lg~~~~~~g~~~eAl~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~e 100 (485)
...|...+..|+|..|.+..+.++..+|++..+...++.+|.++|.-.+
T Consensus 465 ~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 465 LKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 3344444444555555555555555555555555555555555444333
No 347
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis}
Probab=32.61 E-value=57 Score=33.17 Aligned_cols=24 Identities=13% Similarity=0.283 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHCCCc--EEEeecccc
Q 011451 394 GADVTKRFLQDNSLD--LVVRSHEVK 417 (485)
Q Consensus 394 g~~~~~~fl~~~~~~--~iir~h~~~ 417 (485)
..+.+..+|++++++ +++-||.-.
T Consensus 358 ~R~~Ll~~l~~~~v~n~vvLsGDvH~ 383 (527)
T 2yeq_A 358 QRERVINFIKSKNLNNVVVLTGDVHA 383 (527)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECSSSS
T ss_pred HHHHHHHHHHHhCCCCEEEEEcchHH
Confidence 466788899999995 888888754
No 348
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.83 E-value=1.2e+02 Score=28.99 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=34.8
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 33 AIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 33 A~~~y~~al~~-----~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
++++|.+|+.. ...+...|..+|..+++.+++.+|+.++..|-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 56667776654 2345567888999999999999999999888754
No 349
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=29.25 E-value=83 Score=23.00 Aligned_cols=12 Identities=25% Similarity=0.130 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 011451 65 GSAIQDASKAIE 76 (485)
Q Consensus 65 ~eAl~~~~~al~ 76 (485)
++|++...+|++
T Consensus 17 ~~Ai~lv~~Ave 28 (83)
T 2w2u_A 17 EMARKYAINAVK 28 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 350
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.10 E-value=51 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011451 85 YYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 85 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
...+|.=|..+|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456788888999999999999988864
No 351
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.98 E-value=3.7e+02 Score=25.80 Aligned_cols=89 Identities=7% Similarity=-0.088 Sum_probs=62.0
Q ss_pred HHHHccCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------C
Q 011451 23 EAFRAKKYSQAIDLYSQAIELN-----------------SQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-------D 78 (485)
Q Consensus 23 ~~~~~g~~~~A~~~y~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~-------~ 78 (485)
+.....+.++|++.+++..+.- .....+...++..|...++.++|...++++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3445678999999988764321 011345667888899999999999999887643 1
Q ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011451 79 PR-YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 79 p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
|. ....|...+..|...+++.++....-.++..
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 21 2334555677778889999988887777763
No 352
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.10 E-value=2.1e+02 Score=23.93 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011451 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
..+|...+... +++.+.|...... ....+..|...|..+...|++.+|.+.|+.+++...
T Consensus 66 LklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 66 LNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 45666666552 3466667666654 345677888889999999999999999999998753
No 353
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.04 E-value=1.1e+02 Score=30.34 Aligned_cols=61 Identities=11% Similarity=-0.050 Sum_probs=48.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC
Q 011451 21 ANEAFRAKKYSQAIDLYSQAIELNS----------QNAVYYANRAFAHTKLEEYGSAIQDASKAIEI-DPRY 81 (485)
Q Consensus 21 g~~~~~~g~~~~A~~~y~~al~~~p----------~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~-~p~~ 81 (485)
=.+|++.++...+...++..-...+ .-...++.+|..++..++|.+|.+++..|++. .|..
T Consensus 183 ~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 183 NNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3678899999888888765433222 12467889999999999999999999999998 7754
No 354
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=26.97 E-value=96 Score=22.61 Aligned_cols=12 Identities=25% Similarity=0.050 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHh
Q 011451 66 SAIQDASKAIEI 77 (485)
Q Consensus 66 eAl~~~~~al~~ 77 (485)
+|++..++|++.
T Consensus 10 ~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 10 MARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 355
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=26.15 E-value=1e+02 Score=22.71 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=7.3
Q ss_pred HccCHHHHHHHHHHHH
Q 011451 60 KLEEYGSAIQDASKAI 75 (485)
Q Consensus 60 ~~g~~~eAl~~~~~al 75 (485)
..|++++|+.+|..|+
T Consensus 28 ~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 28 SESRYPQALVCYQEGI 43 (86)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3444444444444444
No 356
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.83 E-value=55 Score=25.71 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhC
Q 011451 30 YSQAIDLYSQAIELN 44 (485)
Q Consensus 30 ~~~A~~~y~~al~~~ 44 (485)
+++|.++..+||+++
T Consensus 19 h~~AF~~Is~AL~~D 33 (116)
T 2dl1_A 19 YKKAFLFVNKGLNTD 33 (116)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 444555555555444
No 357
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.03 E-value=1.9e+02 Score=21.56 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=12.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Q 011451 20 LANEAFRAKKYSQAIDLYSQAIELN 44 (485)
Q Consensus 20 lg~~~~~~g~~~~A~~~y~~al~~~ 44 (485)
.|..++..|+|=+|-+.++.+....
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~ 31 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKA 31 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhC
Confidence 3444444455555555555544444
No 358
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=23.43 E-value=1.7e+02 Score=24.22 Aligned_cols=60 Identities=13% Similarity=-0.066 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 011451 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI--DPRYPKGYYRRGAAYLAMGKFKEALKDFQQVKKLSP 113 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 113 (485)
..+|...+.. .+++.+.|...... ....+..|...|..+...|++++|.+.|+.+++...
T Consensus 71 LklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 71 ISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4555555544 24477777776654 345677888899999999999999999999998753
No 359
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=23.39 E-value=1.8e+02 Score=28.66 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011451 64 YGSAIQDASKAIEIDPR--------YPKGYYRRGAAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 64 ~~eAl~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 110 (485)
++..++.++.|+..-|. ...++..+|.+|...|+|++|.+..++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45667777778776553 245788899999999999999999998885
No 360
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=23.31 E-value=1.7e+02 Score=28.77 Aligned_cols=47 Identities=19% Similarity=0.047 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 31 SQAIDLYSQAIELNSQ--------NAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 31 ~~A~~~y~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
+..++-++.|+..-|. -..++..+|.+|+..+++++|+++.++++..
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 4455556666655443 3567888999999999999999999999863
No 361
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=23.28 E-value=1.7e+02 Score=29.17 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011451 64 YGSAIQDASKAIEIDPR-----------YPKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 64 ~~eAl~~~~~al~~~p~-----------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
++..++.++.|+..-|. ...++..+|.+|..+++|++|.+..++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34556777777776543 2357888999999999999999999999875
No 362
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=22.67 E-value=1.3e+02 Score=29.32 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 32 QAIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 32 ~A~~~y~~al~~-----~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
.++++|.+|+.. ...+...|..+|-.+++.+++.+|+..+..|-..
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 478889988875 3456777888999999999999999999887654
No 363
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=21.94 E-value=1.9e+02 Score=28.91 Aligned_cols=30 Identities=13% Similarity=-0.003 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 011451 48 AVYYANRAFAHTKLEEYGSAIQDASKAIEI 77 (485)
Q Consensus 48 ~~~~~~lg~~~~~~g~~~eAl~~~~~al~~ 77 (485)
..++..+|.+|+..+++++|+++.++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 567889999999999999999999999975
No 364
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.87 E-value=1.3e+02 Score=22.39 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 011451 66 SAIQDASKAI 75 (485)
Q Consensus 66 eAl~~~~~al 75 (485)
.|+....+|+
T Consensus 14 ~Ai~lv~~Av 23 (93)
T 1wfd_A 14 AAVAVLKRAV 23 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333344433
No 365
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=21.51 E-value=5.4e+02 Score=25.16 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=40.8
Q ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCChHHHHHHH
Q 011451 33 AIDLYSQAIEL-----NSQNAVYYANRAFAHTKLEEYGSAIQDASKAIEI------DPRYPKGYYRRG 89 (485)
Q Consensus 33 A~~~y~~al~~-----~p~~~~~~~~lg~~~~~~g~~~eAl~~~~~al~~------~p~~~~~~~~lg 89 (485)
++++|.+|+.. ...+...|..+|-.+.+.+++.+|+..+..|-.. ..++.+.|-.+-
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~ 350 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFF 350 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHH
Confidence 56677777764 2344566788899999999999999999988653 344566665543
No 366
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=21.40 E-value=1.9e+02 Score=28.53 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 011451 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKL 111 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 111 (485)
..++..+|.+|...|+|++|.+..++++..
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 567888999999999999999999999874
No 367
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=21.35 E-value=1.4e+02 Score=21.68 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=5.7
Q ss_pred cCHHHHHHHHHHHH
Q 011451 62 EEYGSAIQDASKAI 75 (485)
Q Consensus 62 g~~~eAl~~~~~al 75 (485)
|++++|+.+|..|+
T Consensus 27 g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 27 TQYEEAYTAYYNGL 40 (85)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444333
No 368
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=21.35 E-value=1.9e+02 Score=28.50 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhcC
Q 011451 116 PDAAQKVKECEKAVKKLKFEEAIAV 140 (485)
Q Consensus 116 ~~~~~~l~~~~~~~~~~~~~~A~~~ 140 (485)
..++..+++++...++ +++|+..
T Consensus 196 ~aa~allArvyL~~~~--~~~A~~~ 218 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGE--YNEALTM 218 (461)
T ss_dssp HHHHHHHHHHHHHHTC--HHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--HHHHHHH
Confidence 3456667777755544 4555443
No 369
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=21.30 E-value=2.4e+02 Score=21.02 Aligned_cols=56 Identities=7% Similarity=0.032 Sum_probs=36.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHHHHHH--HHHHHcCCHHHHHHHHHHHHH
Q 011451 53 NRAFAHTKLEEYGSAIQDASKAIEIDPRYP----KGYYRRG--AAYLAMGKFKEALKDFQQVKK 110 (485)
Q Consensus 53 ~lg~~~~~~g~~~eAl~~~~~al~~~p~~~----~~~~~lg--~~~~~~g~~~eA~~~~~~al~ 110 (485)
..|..++..|+|=+|-+.++.+....|+.. ....+++ ..+...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 356677888999999999999988875421 2233333 333345665 6666666665
No 370
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.15 E-value=1.4e+02 Score=23.34 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=11.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 011451 51 YANRAFAHTKLEEYGSAIQDASKAI 75 (485)
Q Consensus 51 ~~~lg~~~~~~g~~~eAl~~~~~al 75 (485)
+.+.|...-..|+-++|+++|++.+
T Consensus 25 ~Is~AL~~DE~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 25 FVNKGLNTDELGQKEEAKNYYKQGI 49 (116)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 3444444444455555555554444
No 371
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=25.79 E-value=21 Score=37.54 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhh
Q 011451 82 PKGYYRRGAAYLAMGKFKEALKDFQQVKKLSPNDPDAAQKVKECEKAVKKL 132 (485)
Q Consensus 82 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 132 (485)
.......|...+..|+|.-|.+..+.++..+|++.++...++.++.+++..
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~ 511 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQ 511 (668)
Confidence 345566777778889999999999999999999999999999999888854
Done!