BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011452
(485 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1CNW8|SSH4_ASPCL Protein ssh4 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65
/ DSM 816 / NCTC 3887 / NRRL 1) GN=ssh4 PE=3 SV=1
Length = 511
Score = 37.0 bits (84), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 16/72 (22%)
Query: 290 NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ---------LFLTFRN 340
+E+ ++E E L+++D ++SR+E+M AF+ Y + FL +
Sbjct: 124 DEQAFAREEAEALEVMD-------DLSRSEYMRAKAFVEAYPPESMQTDISLSQFLAIQE 176
Query: 341 RTVAVWNFRGEL 352
+ V+ W F+ EL
Sbjct: 177 KGVSAWEFQPEL 188
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 36.2 bits (82), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 77/183 (42%), Gaps = 16/183 (8%)
Query: 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFT 251
W FV F +G++L D K++ +++ + +++ + V + P L
Sbjct: 686 WVRFVVFSP-DGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETL--A 742
Query: 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311
ASG +K+ I+DGT L++ + V F N L + +++ DV +
Sbjct: 743 SASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGN-TLASSAADHTIKLWDVSQGK 801
Query: 312 LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTN 369
++ + F + Q + +RT+ +WN+ GE + ++ H TN
Sbjct: 802 CLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGH--------TN 853
Query: 370 NIY 372
++Y
Sbjct: 854 SVY 856
>sp|Q9VNH6|EXOC4_DROME Exocyst complex component 4 OS=Drosophila melanogaster GN=sec8 PE=1
SV=3
Length = 985
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 33 AGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQEEYDTHDPKGHCSMVLPFL 92
AG VN +K L E + +R + +A+ + ++RL E HD + + VLP
Sbjct: 21 AGCGFLVNVIKSLGFSETTEERQKEKQKIEAEFKRSDLRLNELVSRHDQQ--LTQVLPLF 78
Query: 93 RKRSKIIEIVAARDIVFALAQS-GVCAAF--CRETNQRICFLNVTADEVIRSLF 143
+ S E+ A+R+ + A+ ++ GVC CR R +++ + + +
Sbjct: 79 SQVSS--EVTASRERIHAVKENLGVCKRLLQCRRDELRKMWMDAVQHKYVLEML 130
>sp|C3L230|MURG_CLOB6 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=murG PE=3 SV=1
Length = 354
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242
G+A FE + + P ++ D+ V++ + + IY++ LK +L +S K+ + +I
Sbjct: 235 GYAQFEYVNEELPDLMKASDL---VISRAGANVIYELLALKKPNLLIPLSKKSSRGDQI- 290
Query: 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276
+ F K+ + LK +ED T++K NHL
Sbjct: 291 --LNAASFEKSGYSLVLKEEELEDKTLMKKLNHL 322
>sp|A8ESW7|SYD_ARCB4 Aspartate--tRNA ligase OS=Arcobacter butzleri (strain RM4018)
GN=aspS PE=3 SV=1
Length = 589
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 22/173 (12%)
Query: 33 AGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERFRN----IRLQEEYDTHDPKGHCSMV 88
AGFD + K + ++ + R FT D + F N I++ E+ +D C
Sbjct: 206 AGFDKYFQIAKCFRDEDLRADRQPEFTQIDVEMSFCNQEDVIKVAEKL-IYDIFTKCGKN 264
Query: 89 LPFLRKRSKIIEIVA-----ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLF 143
+P +R K E + D+ F + V F TN E+ +
Sbjct: 265 VPSTFRRMKYSEAMEKYGSDKPDLRFDMPLVDVIDIFANSTN-----------EIFAEIA 313
Query: 144 YNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLKWP 195
+K N+ + + DN S R + +Y+R+ G G+ + + LK P
Sbjct: 314 KDKKNNRIKALKCKNGDNIFSKRQMKSFEDYVRKFGAKGLGYFQMKEDGLKGP 366
>sp|A7GGX9|MURG_CLOBL UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Clostridium botulinum (strain Langeland /
NCTC 10281 / Type F) GN=murG PE=3 SV=1
Length = 354
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242
G+A FE + + P ++ D+ V++ + + IY++ LK +L +S K+ + +I
Sbjct: 235 GYAQFEYVNEELPDLMKASDL---VISRAGANVIYELLALKKPNLLIPLSKKSSRGDQI- 290
Query: 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276
+ F K+ + LK +ED T++K N+L
Sbjct: 291 --LNAASFEKSGYSLVLKEEELEDKTLMKKLNYL 322
>sp|B1IKH3|MURG_CLOBK UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Clostridium botulinum (strain Okra / Type
B1) GN=murG PE=3 SV=1
Length = 354
Score = 32.3 bits (72), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242
G+A FE + + P ++ D+ V++ + + IY++ LK +L +S K+ + +I
Sbjct: 235 GYAQFEYVNEELPDLMKASDL---VISRAGANVIYELLALKKPNLLIPLSKKSSRGDQI- 290
Query: 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276
+ F K+ + LK +ED T++K N+L
Sbjct: 291 --LNAASFEKSGYSLVLKEEELEDKTLMKKLNYL 322
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,324,867
Number of Sequences: 539616
Number of extensions: 7188736
Number of successful extensions: 20594
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 20589
Number of HSP's gapped (non-prelim): 24
length of query: 485
length of database: 191,569,459
effective HSP length: 121
effective length of query: 364
effective length of database: 126,275,923
effective search space: 45964435972
effective search space used: 45964435972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)