Query 011452
Match_columns 485
No_of_seqs 243 out of 596
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 01:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.4E-54 3.1E-59 438.4 29.5 321 93-484 113-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-47 3.1E-52 391.1 22.5 282 132-484 171-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 5.7E-47 1.2E-51 383.3 25.0 285 126-485 106-438 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-45 2.8E-50 376.8 23.7 265 105-404 187-458 (459)
5 KOG0295 WD40 repeat-containing 100.0 1.2E-41 2.6E-46 342.9 24.3 281 131-484 104-404 (406)
6 KOG0286 G-protein beta subunit 100.0 9E-40 1.9E-44 322.5 32.7 285 129-484 49-343 (343)
7 cd00200 WD40 WD40 domain, foun 100.0 6.1E-38 1.3E-42 290.2 36.8 284 128-484 2-289 (289)
8 KOG0279 G protein beta subunit 100.0 2.2E-38 4.9E-43 310.9 32.7 296 127-485 7-312 (315)
9 PLN00181 protein SPA1-RELATED; 100.0 9.3E-38 2E-42 351.1 41.0 317 114-485 457-792 (793)
10 KOG0295 WD40 repeat-containing 100.0 8.7E-39 1.9E-43 322.3 25.3 278 94-404 107-404 (406)
11 KOG0266 WD40 repeat-containing 100.0 1.8E-37 3.9E-42 329.7 33.4 291 128-484 151-452 (456)
12 KOG0319 WD40-repeat-containing 100.0 9.5E-38 2.1E-42 335.1 29.9 326 91-485 101-576 (775)
13 KOG0291 WD40-repeat-containing 100.0 7.7E-36 1.7E-40 320.8 37.3 360 59-485 101-507 (893)
14 KOG0319 WD40-repeat-containing 100.0 8.9E-37 1.9E-41 327.6 28.7 320 94-484 191-617 (775)
15 cd00200 WD40 WD40 domain, foun 100.0 5.5E-35 1.2E-39 270.4 35.6 276 94-404 8-289 (289)
16 KOG0279 G protein beta subunit 100.0 1E-35 2.2E-40 292.3 31.0 281 94-406 14-313 (315)
17 KOG0263 Transcription initiati 100.0 6E-37 1.3E-41 331.0 23.6 275 127-485 370-648 (707)
18 KOG0266 WD40 repeat-containing 100.0 4.3E-36 9.3E-41 319.2 29.3 238 195-485 162-408 (456)
19 KOG0315 G-protein beta subunit 100.0 1.1E-35 2.3E-40 288.8 29.3 279 106-418 11-300 (311)
20 KOG0291 WD40-repeat-containing 100.0 1.8E-34 3.9E-39 310.3 38.8 336 96-485 266-611 (893)
21 KOG0273 Beta-transducin family 100.0 3.5E-34 7.5E-39 296.2 31.5 317 93-484 176-521 (524)
22 KOG0286 G-protein beta subunit 100.0 7.3E-34 1.6E-38 280.7 31.9 291 69-404 44-343 (343)
23 KOG0285 Pleiotropic regulator 100.0 1.2E-34 2.6E-39 292.1 25.6 298 120-484 137-437 (460)
24 PLN00181 protein SPA1-RELATED; 100.0 5.6E-33 1.2E-37 312.5 37.7 278 92-405 480-792 (793)
25 KOG0263 Transcription initiati 100.0 3.3E-34 7.1E-39 309.9 26.0 330 86-475 369-704 (707)
26 KOG0281 Beta-TrCP (transducin 100.0 1.1E-35 2.3E-40 298.8 13.1 225 191-485 236-476 (499)
27 KOG0273 Beta-transducin family 100.0 1.8E-33 3.9E-38 290.8 27.3 283 131-485 174-481 (524)
28 KOG0274 Cdc4 and related F-box 100.0 5.8E-33 1.3E-37 300.5 29.9 278 96-418 209-494 (537)
29 KOG0274 Cdc4 and related F-box 100.0 9.4E-33 2E-37 298.9 29.8 270 133-485 205-481 (537)
30 KOG0645 WD40 repeat protein [G 100.0 3.3E-32 7.2E-37 266.8 30.4 284 127-485 6-310 (312)
31 KOG0284 Polyadenylation factor 100.0 5E-34 1.1E-38 291.1 17.4 272 136-484 96-378 (464)
32 KOG0265 U5 snRNP-specific prot 100.0 2.4E-32 5.2E-37 270.6 27.2 286 128-482 40-334 (338)
33 KOG0281 Beta-TrCP (transducin 100.0 1.2E-34 2.6E-39 291.3 11.0 226 190-485 195-427 (499)
34 KOG0313 Microtubule binding pr 100.0 3.5E-32 7.6E-37 275.7 26.2 357 36-484 35-416 (423)
35 KOG0285 Pleiotropic regulator 100.0 1.7E-32 3.6E-37 276.6 21.1 235 190-484 149-387 (460)
36 KOG0315 G-protein beta subunit 100.0 4.6E-31 1E-35 256.5 28.8 254 168-485 20-287 (311)
37 KOG0276 Vesicle coat complex C 100.0 4.2E-32 9E-37 287.7 22.8 233 194-485 15-256 (794)
38 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 3.6E-29 7.9E-34 241.2 38.4 277 105-417 1-290 (300)
39 KOG0292 Vesicle coat complex C 100.0 4.4E-31 9.6E-36 287.5 26.2 274 135-480 8-316 (1202)
40 KOG0296 Angio-associated migra 100.0 3.8E-30 8.3E-35 260.0 30.7 324 74-484 58-396 (399)
41 KOG0318 WD40 repeat stress pro 100.0 1.4E-29 3.1E-34 264.7 35.0 317 105-485 71-559 (603)
42 KOG0276 Vesicle coat complex C 100.0 1.2E-30 2.6E-35 276.7 26.8 277 135-482 12-295 (794)
43 KOG0292 Vesicle coat complex C 100.0 3.5E-31 7.7E-36 288.3 21.2 240 187-485 5-279 (1202)
44 KOG0282 mRNA splicing factor [ 100.0 2E-31 4.4E-36 276.3 17.6 288 125-484 204-503 (503)
45 KOG0275 Conserved WD40 repeat- 100.0 2.2E-31 4.8E-36 266.0 17.0 290 128-484 205-507 (508)
46 KOG0284 Polyadenylation factor 100.0 2.4E-31 5.3E-36 271.5 17.2 345 35-418 35-393 (464)
47 KOG0293 WD40 repeat-containing 100.0 2.5E-30 5.5E-35 264.4 22.5 285 129-485 218-512 (519)
48 PTZ00421 coronin; Provisional 100.0 3.6E-29 7.8E-34 269.0 32.5 237 198-485 26-289 (493)
49 KOG0301 Phospholipase A2-activ 100.0 6.5E-30 1.4E-34 273.6 25.3 278 126-484 5-286 (745)
50 KOG0643 Translation initiation 100.0 6.1E-30 1.3E-34 250.6 22.7 292 131-483 6-314 (327)
51 KOG0306 WD40-repeat-containing 100.0 6.7E-29 1.4E-33 267.5 30.1 297 112-484 341-662 (888)
52 KOG0316 Conserved WD40 repeat- 100.0 1E-29 2.2E-34 245.8 20.7 233 192-485 17-256 (307)
53 KOG0265 U5 snRNP-specific prot 100.0 7.9E-29 1.7E-33 245.7 25.8 279 75-402 42-334 (338)
54 KOG0645 WD40 repeat protein [G 100.0 2.7E-28 5.9E-33 239.3 28.7 230 191-484 13-259 (312)
55 PTZ00421 coronin; Provisional 100.0 6.8E-28 1.5E-32 259.2 34.5 258 138-417 22-301 (493)
56 KOG0318 WD40 repeat stress pro 100.0 1.8E-27 3.8E-32 249.1 34.3 319 97-485 192-601 (603)
57 KOG0288 WD40 repeat protein Ti 100.0 1.9E-29 4.1E-34 258.0 18.8 282 135-484 174-459 (459)
58 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.3E-26 2.8E-31 223.5 35.2 258 168-485 11-278 (300)
59 KOG0306 WD40-repeat-containing 100.0 6.2E-28 1.3E-32 260.1 28.3 278 91-405 369-663 (888)
60 KOG0278 Serine/threonine kinas 100.0 4.3E-29 9.3E-34 243.0 17.4 276 94-484 13-295 (334)
61 PTZ00420 coronin; Provisional 100.0 1.7E-27 3.7E-32 259.2 31.8 228 211-485 50-292 (568)
62 PTZ00420 coronin; Provisional 100.0 1.5E-26 3.4E-31 251.8 34.9 255 111-384 50-325 (568)
63 KOG1446 Histone H3 (Lys4) meth 100.0 1.2E-26 2.5E-31 231.3 29.0 246 187-485 10-261 (311)
64 KOG0310 Conserved WD40 repeat- 100.0 2.7E-27 5.8E-32 245.9 24.1 286 117-481 11-304 (487)
65 KOG0277 Peroxisomal targeting 100.0 3.1E-27 6.7E-32 230.4 20.4 280 140-484 12-307 (311)
66 KOG0316 Conserved WD40 repeat- 100.0 2E-26 4.4E-31 222.9 25.4 277 94-483 16-296 (307)
67 KOG0293 WD40 repeat-containing 100.0 9.3E-27 2E-31 238.4 23.4 304 67-406 196-513 (519)
68 KOG0288 WD40 repeat protein Ti 100.0 2.5E-27 5.4E-32 242.5 18.3 274 94-403 174-458 (459)
69 KOG0301 Phospholipase A2-activ 99.9 2.2E-26 4.7E-31 246.7 25.0 279 69-406 3-288 (745)
70 KOG0313 Microtubule binding pr 99.9 2.1E-26 4.5E-31 233.9 23.1 253 168-485 83-375 (423)
71 KOG0296 Angio-associated migra 99.9 7.9E-26 1.7E-30 228.8 27.1 292 75-406 90-398 (399)
72 KOG0275 Conserved WD40 repeat- 99.9 2.9E-27 6.2E-32 236.6 16.0 278 94-404 212-507 (508)
73 KOG0305 Anaphase promoting com 99.9 5.9E-26 1.3E-30 241.2 26.7 269 142-485 183-460 (484)
74 KOG0641 WD40 repeat protein [G 99.9 4.9E-25 1.1E-29 212.5 30.0 292 127-484 25-347 (350)
75 KOG0283 WD40 repeat-containing 99.9 2.2E-26 4.8E-31 250.8 22.9 242 190-485 265-575 (712)
76 KOG0640 mRNA cleavage stimulat 99.9 3.8E-26 8.2E-31 227.7 22.4 295 127-484 104-424 (430)
77 KOG0308 Conserved WD40 repeat- 99.9 6.9E-27 1.5E-31 249.2 18.2 231 197-483 29-282 (735)
78 KOG0282 mRNA splicing factor [ 99.9 7.5E-27 1.6E-31 242.5 17.6 291 75-404 197-503 (503)
79 KOG0300 WD40 repeat-containing 99.9 3.3E-25 7.1E-30 221.5 22.2 322 84-485 137-475 (481)
80 KOG0643 Translation initiation 99.9 2.3E-24 5E-29 211.6 25.8 275 94-405 9-316 (327)
81 KOG1407 WD40 repeat protein [F 99.9 3E-24 6.5E-29 210.2 26.3 298 62-405 7-310 (313)
82 KOG0277 Peroxisomal targeting 99.9 5.5E-25 1.2E-29 214.7 21.1 285 83-404 11-307 (311)
83 KOG0305 Anaphase promoting com 99.9 2.3E-24 5.1E-29 229.1 27.7 265 108-408 190-463 (484)
84 KOG0310 Conserved WD40 repeat- 99.9 2.7E-25 5.9E-30 231.1 19.5 231 193-484 27-266 (487)
85 COG2319 FOG: WD40 repeat [Gene 99.9 8.2E-22 1.8E-26 188.5 41.4 322 91-484 61-398 (466)
86 KOG0299 U3 snoRNP-associated p 99.9 1.9E-24 4E-29 223.7 24.4 274 133-475 139-444 (479)
87 KOG1407 WD40 repeat protein [F 99.9 8.9E-24 1.9E-28 206.9 27.6 276 131-483 16-308 (313)
88 KOG0772 Uncharacterized conser 99.9 3E-24 6.4E-29 224.6 24.2 291 97-483 169-484 (641)
89 KOG0973 Histone transcription 99.9 5E-24 1.1E-28 237.3 27.3 289 130-483 7-352 (942)
90 KOG0300 WD40 repeat-containing 99.9 1.9E-24 4.1E-29 216.0 19.6 290 107-485 126-427 (481)
91 COG2319 FOG: WD40 repeat [Gene 99.9 1.6E-21 3.5E-26 186.5 38.7 302 108-485 42-358 (466)
92 KOG0308 Conserved WD40 repeat- 99.9 1.1E-24 2.3E-29 232.6 18.1 244 141-415 29-295 (735)
93 KOG0268 Sof1-like rRNA process 99.9 5.3E-25 1.2E-29 222.8 14.7 278 129-484 60-343 (433)
94 KOG1539 WD repeat protein [Gen 99.9 8.7E-23 1.9E-27 222.5 31.6 321 95-485 244-647 (910)
95 KOG0267 Microtubule severing p 99.9 1.7E-25 3.8E-30 240.6 9.7 219 203-478 38-260 (825)
96 KOG0278 Serine/threonine kinas 99.9 2.5E-24 5.4E-29 209.9 14.2 240 90-351 54-300 (334)
97 KOG0299 U3 snoRNP-associated p 99.9 4E-23 8.6E-28 213.9 23.7 268 92-385 139-445 (479)
98 KOG1408 WD40 repeat protein [F 99.9 1.6E-22 3.4E-27 217.4 27.9 322 98-485 327-712 (1080)
99 KOG1063 RNA polymerase II elon 99.9 1.1E-22 2.3E-27 218.5 26.0 331 70-484 181-646 (764)
100 KOG1446 Histone H3 (Lys4) meth 99.9 9.2E-22 2E-26 196.4 30.6 276 95-405 14-302 (311)
101 KOG0772 Uncharacterized conser 99.9 1.3E-23 2.9E-28 219.7 17.6 230 192-476 167-429 (641)
102 KOG0283 WD40 repeat-containing 99.9 1.2E-22 2.6E-27 221.7 25.7 244 131-405 262-575 (712)
103 KOG2096 WD40 repeat protein [G 99.9 2.3E-22 5E-27 201.3 25.0 298 117-484 63-400 (420)
104 KOG0973 Histone transcription 99.9 2.3E-22 5.1E-27 224.1 26.9 281 92-408 9-357 (942)
105 KOG0289 mRNA splicing factor [ 99.9 5.2E-22 1.1E-26 204.6 25.6 264 105-404 231-504 (506)
106 KOG0268 Sof1-like rRNA process 99.9 4.8E-23 1E-27 208.7 15.4 299 56-409 43-348 (433)
107 KOG1332 Vesicle coat complex C 99.9 1.7E-22 3.7E-27 196.6 18.3 229 203-484 21-284 (299)
108 KOG0289 mRNA splicing factor [ 99.9 7.9E-22 1.7E-26 203.3 22.5 232 195-483 220-459 (506)
109 KOG1539 WD repeat protein [Gen 99.9 1E-20 2.3E-25 206.4 30.0 304 108-485 175-605 (910)
110 KOG0267 Microtubule severing p 99.9 3.4E-23 7.4E-28 223.0 8.7 218 207-485 6-225 (825)
111 KOG0639 Transducin-like enhanc 99.9 9.8E-22 2.1E-26 205.3 18.8 282 128-484 413-702 (705)
112 KOG0640 mRNA cleavage stimulat 99.9 3.6E-21 7.7E-26 192.3 20.4 278 94-404 111-424 (430)
113 KOG0294 WD40 repeat-containing 99.9 9.8E-21 2.1E-25 189.4 22.6 234 186-485 36-280 (362)
114 KOG0641 WD40 repeat protein [G 99.9 6.8E-20 1.5E-24 177.1 27.4 240 193-485 33-302 (350)
115 KOG4283 Transcription-coupled 99.9 3.3E-20 7.2E-25 184.4 25.7 291 94-484 42-363 (397)
116 KOG1063 RNA polymerase II elon 99.9 2.4E-20 5.2E-25 200.6 26.0 316 107-484 161-600 (764)
117 KOG2048 WD40 repeat protein [G 99.9 8.6E-20 1.9E-24 195.9 29.8 272 136-482 25-315 (691)
118 KOG0264 Nucleosome remodeling 99.9 8.6E-21 1.9E-25 196.2 21.3 231 197-484 129-402 (422)
119 KOG1036 Mitotic spindle checkp 99.9 7.2E-20 1.6E-24 182.6 26.9 274 131-476 8-294 (323)
120 KOG1408 WD40 repeat protein [F 99.9 9.4E-21 2E-25 203.9 22.1 292 77-407 352-714 (1080)
121 KOG0647 mRNA export protein (c 99.9 5.7E-20 1.2E-24 183.1 25.8 277 130-474 21-311 (347)
122 KOG2055 WD40 repeat protein [G 99.9 4.8E-20 1E-24 191.3 24.8 281 137-485 214-511 (514)
123 KOG0647 mRNA export protein (c 99.9 3.2E-20 6.9E-25 184.9 22.5 241 194-484 29-279 (347)
124 KOG0646 WD40 repeat protein [G 99.9 2.2E-20 4.7E-25 194.0 20.4 276 107-415 9-316 (476)
125 KOG2096 WD40 repeat protein [G 99.8 3.7E-19 8.1E-24 178.5 26.4 279 94-404 85-400 (420)
126 KOG2048 WD40 repeat protein [G 99.8 2.9E-18 6.3E-23 184.3 33.1 273 83-385 15-309 (691)
127 KOG2445 Nuclear pore complex c 99.8 4.2E-19 9.2E-24 177.3 23.7 239 187-484 8-316 (361)
128 KOG0650 WD40 repeat nucleolar 99.8 3.7E-19 7.9E-24 189.2 24.4 313 91-483 396-732 (733)
129 KOG4283 Transcription-coupled 99.8 4.4E-19 9.6E-24 176.5 23.1 205 191-410 42-280 (397)
130 PRK11028 6-phosphogluconolacto 99.8 5.7E-18 1.2E-22 171.0 31.7 270 108-410 5-310 (330)
131 KOG2106 Uncharacterized conser 99.8 1.3E-17 2.8E-22 174.9 34.0 325 70-484 94-475 (626)
132 KOG1274 WD40 repeat protein [G 99.8 1.6E-18 3.5E-23 191.0 28.6 239 134-407 11-263 (933)
133 KOG0264 Nucleosome remodeling 99.8 3.8E-19 8.3E-24 184.1 22.3 245 132-406 120-404 (422)
134 KOG1274 WD40 repeat protein [G 99.8 6.4E-19 1.4E-23 194.2 25.2 232 197-484 18-260 (933)
135 KOG1332 Vesicle coat complex C 99.8 2.3E-19 5E-24 174.8 19.0 235 105-404 23-284 (299)
136 KOG0269 WD40 repeat-containing 99.8 1.1E-19 2.3E-24 197.4 17.8 228 198-480 93-334 (839)
137 KOG0646 WD40 repeat protein [G 99.8 7.2E-19 1.6E-23 182.7 23.0 257 168-485 18-306 (476)
138 KOG0294 WD40 repeat-containing 99.8 1.3E-18 2.9E-23 174.2 23.8 234 93-349 41-281 (362)
139 PRK11028 6-phosphogluconolacto 99.8 2.1E-17 4.5E-22 166.9 31.1 263 168-484 12-302 (330)
140 PRK01742 tolB translocation pr 99.8 2.9E-18 6.4E-23 180.9 23.2 234 114-376 183-426 (429)
141 KOG2106 Uncharacterized conser 99.8 6.2E-17 1.3E-21 169.8 32.3 314 95-484 154-519 (626)
142 PRK01742 tolB translocation pr 99.8 1E-17 2.2E-22 176.8 25.7 220 168-418 184-415 (429)
143 KOG0321 WD40 repeat-containing 99.8 1.4E-18 3E-23 185.8 18.8 296 105-485 64-390 (720)
144 KOG2445 Nuclear pore complex c 99.8 1.2E-17 2.5E-22 167.1 24.2 258 130-418 7-333 (361)
145 KOG2919 Guanine nucleotide-bin 99.8 5.4E-18 1.2E-22 170.4 21.0 277 135-477 48-361 (406)
146 KOG0269 WD40 repeat-containing 99.8 2.4E-19 5.3E-24 194.7 11.1 193 237-485 91-295 (839)
147 KOG0303 Actin-binding protein 99.8 1.4E-17 2.9E-22 170.8 22.2 221 176-484 66-292 (472)
148 KOG1036 Mitotic spindle checkp 99.8 4.6E-17 1E-21 162.6 23.5 239 194-485 15-261 (323)
149 KOG2055 WD40 repeat protein [G 99.8 7.3E-17 1.6E-21 167.9 25.6 281 95-406 213-512 (514)
150 KOG2919 Guanine nucleotide-bin 99.8 2.4E-17 5.3E-22 165.7 19.3 234 197-485 54-326 (406)
151 KOG0639 Transducin-like enhanc 99.8 2.8E-17 6.1E-22 172.2 20.4 263 92-385 416-694 (705)
152 KOG0270 WD40 repeat-containing 99.8 2.4E-17 5.2E-22 170.7 18.7 228 204-485 191-448 (463)
153 KOG0302 Ribosome Assembly prot 99.8 1.6E-17 3.6E-22 169.4 17.1 194 235-485 153-377 (440)
154 KOG1034 Transcriptional repres 99.8 8.2E-17 1.8E-21 162.2 21.4 288 131-484 33-381 (385)
155 KOG4328 WD40 protein [Function 99.8 7.7E-17 1.7E-21 167.5 21.8 294 129-485 179-494 (498)
156 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-17 5.7E-22 172.3 17.7 253 169-485 13-279 (673)
157 KOG1273 WD40 repeat protein [G 99.7 1.7E-16 3.6E-21 159.4 22.4 282 127-484 17-320 (405)
158 PRK03629 tolB translocation pr 99.7 2E-15 4.4E-20 159.7 28.6 236 116-375 180-427 (429)
159 KOG4328 WD40 protein [Function 99.7 3.7E-16 8.1E-21 162.5 21.3 278 95-404 186-493 (498)
160 KOG0322 G-protein beta subunit 99.7 1E-16 2.2E-21 157.8 15.5 296 81-485 3-322 (323)
161 KOG1517 Guanine nucleotide bin 99.7 7.2E-16 1.6E-20 172.0 23.6 304 114-484 1049-1379(1387)
162 KOG1007 WD repeat protein TSSC 99.7 5.7E-16 1.2E-20 154.1 20.0 267 113-406 38-361 (370)
163 KOG0302 Ribosome Assembly prot 99.7 2.5E-16 5.5E-21 160.8 17.4 185 204-407 164-379 (440)
164 KOG4378 Nuclear protein COP1 [ 99.7 1.1E-15 2.4E-20 160.2 22.1 276 108-419 5-294 (673)
165 PRK04922 tolB translocation pr 99.7 1.2E-14 2.6E-19 153.5 29.5 274 116-418 120-422 (433)
166 PRK04922 tolB translocation pr 99.7 2E-14 4.3E-19 151.9 31.1 183 214-415 183-376 (433)
167 KOG0642 Cell-cycle nuclear pro 99.7 2.7E-16 5.9E-21 166.6 15.7 201 233-485 294-560 (577)
168 KOG0270 WD40 repeat-containing 99.7 1.1E-15 2.4E-20 158.4 19.7 198 197-410 248-453 (463)
169 KOG0650 WD40 repeat nucleolar 99.7 6.7E-16 1.5E-20 164.6 18.1 236 191-483 399-677 (733)
170 KOG0321 WD40 repeat-containing 99.7 1.4E-15 3E-20 163.1 19.4 239 197-484 54-345 (720)
171 PRK03629 tolB translocation pr 99.7 2.5E-14 5.3E-19 151.5 27.2 207 215-479 179-396 (429)
172 KOG1034 Transcriptional repres 99.7 3.3E-16 7.2E-21 157.8 12.0 317 38-406 29-383 (385)
173 KOG0303 Actin-binding protein 99.7 7E-16 1.5E-20 158.3 13.5 131 272-419 76-216 (472)
174 KOG1009 Chromatin assembly com 99.6 5.1E-14 1.1E-18 145.1 24.1 277 136-481 13-367 (434)
175 KOG1273 WD40 repeat protein [G 99.6 3.7E-14 8E-19 142.6 21.8 275 83-407 26-323 (405)
176 PRK05137 tolB translocation pr 99.6 1.6E-13 3.5E-18 145.0 27.9 207 214-476 181-396 (435)
177 KOG1538 Uncharacterized conser 99.6 3.9E-14 8.4E-19 152.5 22.7 269 138-484 14-291 (1081)
178 KOG0642 Cell-cycle nuclear pro 99.6 5.2E-15 1.1E-19 157.1 15.4 252 133-418 291-573 (577)
179 KOG1007 WD repeat protein TSSC 99.6 1.9E-14 4.1E-19 143.4 18.1 262 73-349 41-361 (370)
180 KOG0307 Vesicle coat complex C 99.6 3E-15 6.6E-20 168.5 13.8 240 95-350 64-328 (1049)
181 KOG0307 Vesicle coat complex C 99.6 2.5E-15 5.4E-20 169.2 12.9 275 105-408 29-329 (1049)
182 KOG0644 Uncharacterized conser 99.6 1.9E-15 4.2E-20 165.5 11.6 277 91-412 186-474 (1113)
183 KOG0644 Uncharacterized conser 99.6 1.2E-15 2.6E-20 167.2 9.5 228 191-482 189-464 (1113)
184 PF08662 eIF2A: Eukaryotic tra 99.6 5.7E-14 1.2E-18 134.1 19.9 129 301-484 38-177 (194)
185 PRK05137 tolB translocation pr 99.6 3.5E-13 7.5E-18 142.4 27.8 222 116-357 183-420 (435)
186 KOG2110 Uncharacterized conser 99.6 3.3E-13 7.2E-18 137.9 26.3 227 197-484 10-246 (391)
187 PRK02889 tolB translocation pr 99.6 1.7E-13 3.7E-18 144.8 24.1 207 215-478 176-392 (427)
188 KOG1538 Uncharacterized conser 99.6 1.2E-13 2.7E-18 148.7 21.8 269 97-406 14-293 (1081)
189 KOG1188 WD40 repeat protein [G 99.6 1.2E-13 2.7E-18 139.9 19.6 280 105-484 40-344 (376)
190 PRK02889 tolB translocation pr 99.6 4.5E-13 9.8E-18 141.6 24.7 246 103-375 162-424 (427)
191 KOG1009 Chromatin assembly com 99.6 2.3E-14 5E-19 147.5 12.2 151 278-482 14-191 (434)
192 KOG4227 WD40 repeat protein [G 99.5 1.1E-12 2.5E-17 134.8 23.8 286 131-484 52-385 (609)
193 PF02239 Cytochrom_D1: Cytochr 99.5 1.6E-11 3.4E-16 128.4 32.0 306 108-484 9-345 (369)
194 PRK00178 tolB translocation pr 99.5 5.1E-12 1.1E-16 132.7 27.8 235 116-375 180-427 (430)
195 TIGR02800 propeller_TolB tol-p 99.5 7.1E-12 1.5E-16 129.9 28.4 241 148-417 155-407 (417)
196 TIGR02800 propeller_TolB tol-p 99.5 5.1E-12 1.1E-16 130.9 26.9 210 214-480 169-388 (417)
197 KOG0771 Prolactin regulatory e 99.5 2.8E-13 6.1E-18 140.0 15.1 188 196-405 148-353 (398)
198 PRK04792 tolB translocation pr 99.5 1.1E-11 2.4E-16 132.2 27.1 235 116-375 199-446 (448)
199 KOG0771 Prolactin regulatory e 99.5 4.1E-13 9E-18 138.7 15.2 188 237-483 148-351 (398)
200 KOG1445 Tumor-specific antigen 99.5 2.7E-13 5.8E-18 145.5 13.9 222 212-484 600-842 (1012)
201 KOG1963 WD40 repeat protein [G 99.5 2.4E-11 5.2E-16 134.5 28.9 317 108-484 174-536 (792)
202 KOG0649 WD40 repeat protein [G 99.5 2.9E-11 6.2E-16 118.7 26.0 195 191-417 61-284 (325)
203 PLN02919 haloacid dehalogenase 99.5 7.3E-11 1.6E-15 137.9 32.3 253 191-485 566-887 (1057)
204 KOG0974 WD-repeat protein WDR6 99.4 2.4E-12 5.2E-17 144.3 18.7 265 105-407 17-289 (967)
205 PLN02919 haloacid dehalogenase 99.4 1.3E-10 2.8E-15 135.9 33.1 244 140-410 571-892 (1057)
206 KOG2110 Uncharacterized conser 99.4 1.9E-10 4.2E-15 117.8 30.1 183 206-407 57-249 (391)
207 PRK01029 tolB translocation pr 99.4 4.4E-11 9.6E-16 127.0 26.4 215 216-484 166-401 (428)
208 PRK00178 tolB translocation pr 99.4 6.4E-11 1.4E-15 124.5 26.8 204 194-417 200-416 (430)
209 KOG1272 WD40-repeat-containing 99.4 4.8E-13 1E-17 139.8 10.1 197 195-416 132-333 (545)
210 KOG0649 WD40 repeat protein [G 99.4 4E-11 8.7E-16 117.7 22.5 197 199-415 17-244 (325)
211 PF08662 eIF2A: Eukaryotic tra 99.4 1.9E-11 4.1E-16 116.8 20.0 153 105-274 17-187 (194)
212 KOG1445 Tumor-specific antigen 99.4 6.9E-12 1.5E-16 134.9 18.5 196 195-409 82-296 (1012)
213 KOG1517 Guanine nucleotide bin 99.4 2.8E-11 6.2E-16 135.9 24.0 276 105-406 1076-1381(1387)
214 KOG2315 Predicted translation 99.4 4.1E-10 8.9E-15 120.3 31.6 317 98-484 37-388 (566)
215 KOG1587 Cytoplasmic dynein int 99.4 7.7E-11 1.7E-15 128.7 26.9 255 169-485 223-515 (555)
216 TIGR03300 assembly_YfgL outer 99.4 1.3E-09 2.7E-14 112.5 34.3 272 102-418 62-350 (377)
217 PRK04792 tolB translocation pr 99.4 9.1E-11 2E-15 125.2 26.5 202 195-418 220-436 (448)
218 KOG1240 Protein kinase contain 99.4 4.7E-11 1E-15 135.8 25.3 257 193-485 1049-1333(1431)
219 KOG1334 WD40 repeat protein [G 99.4 3.5E-12 7.7E-17 134.0 14.8 328 39-484 101-464 (559)
220 PF10282 Lactonase: Lactonase, 99.4 3.9E-09 8.5E-14 108.7 37.1 277 107-413 1-331 (345)
221 COG5354 Uncharacterized protei 99.4 1.7E-10 3.7E-15 122.1 26.9 325 96-485 33-394 (561)
222 PRK01029 tolB translocation pr 99.4 4.5E-10 9.8E-15 119.4 29.5 201 197-414 189-411 (428)
223 KOG0290 Conserved WD40 repeat- 99.4 3.5E-11 7.5E-16 120.4 19.5 256 105-384 59-355 (364)
224 KOG1963 WD40 repeat protein [G 99.4 2.6E-10 5.7E-15 126.4 28.3 268 138-482 18-318 (792)
225 PF02239 Cytochrom_D1: Cytochr 99.4 4.8E-10 1E-14 117.3 29.0 283 105-416 48-357 (369)
226 TIGR02658 TTQ_MADH_Hv methylam 99.4 4.3E-09 9.3E-14 109.6 34.7 267 115-415 27-339 (352)
227 KOG1524 WD40 repeat-containing 99.4 3.1E-11 6.8E-16 128.2 18.9 254 93-385 12-276 (737)
228 TIGR02658 TTQ_MADH_Hv methylam 99.4 2E-09 4.3E-14 112.1 32.0 262 163-484 23-328 (352)
229 KOG1587 Cytoplasmic dynein int 99.3 1.2E-10 2.5E-15 127.4 21.4 240 95-349 242-516 (555)
230 KOG1272 WD40-repeat-containing 99.3 4.6E-12 1E-16 132.6 9.7 225 139-404 132-360 (545)
231 KOG4227 WD40 repeat protein [G 99.3 1.1E-10 2.4E-15 120.4 19.5 249 190-485 54-321 (609)
232 KOG1524 WD40 repeat-containing 99.3 1.1E-10 2.3E-15 124.1 19.1 201 206-480 76-280 (737)
233 KOG1188 WD40 repeat protein [G 99.3 5.4E-11 1.2E-15 120.9 15.1 182 246-485 42-241 (376)
234 KOG0974 WD-repeat protein WDR6 99.3 7.1E-11 1.5E-15 132.7 17.4 191 235-485 89-287 (967)
235 PF10282 Lactonase: Lactonase, 99.3 5E-08 1.1E-12 100.5 37.3 242 192-484 36-320 (345)
236 KOG1240 Protein kinase contain 99.3 7.2E-10 1.6E-14 126.4 24.0 242 94-349 1047-1334(1431)
237 KOG2111 Uncharacterized conser 99.2 2.1E-09 4.5E-14 108.8 23.6 229 197-484 10-254 (346)
238 KOG2394 WD40 protein DMR-N9 [G 99.2 1.1E-10 2.3E-15 124.2 13.7 124 279-418 221-374 (636)
239 KOG0290 Conserved WD40 repeat- 99.2 4.7E-10 1E-14 112.5 17.2 196 235-485 98-317 (364)
240 KOG2321 WD40 repeat protein [G 99.2 2.2E-09 4.7E-14 115.2 22.7 271 135-482 50-339 (703)
241 KOG4547 WD40 repeat-containing 99.2 5.5E-10 1.2E-14 119.7 18.4 205 202-483 2-217 (541)
242 KOG2314 Translation initiation 99.2 5.8E-09 1.3E-13 111.6 25.8 310 101-477 216-558 (698)
243 KOG2111 Uncharacterized conser 99.2 3.3E-09 7.2E-14 107.3 20.8 175 214-407 74-257 (346)
244 KOG1310 WD40 repeat protein [G 99.2 2.1E-10 4.5E-15 122.3 12.3 233 130-412 45-309 (758)
245 KOG2139 WD40 repeat protein [G 99.2 1.9E-09 4.2E-14 110.6 18.8 175 197-385 103-300 (445)
246 KOG1354 Serine/threonine prote 99.1 1.3E-09 2.9E-14 111.2 16.9 249 195-484 28-357 (433)
247 KOG3881 Uncharacterized conser 99.1 5.2E-09 1.1E-13 108.1 19.3 224 203-485 67-319 (412)
248 KOG1334 WD40 repeat protein [G 99.1 1.6E-09 3.4E-14 114.4 14.8 241 192-484 142-422 (559)
249 KOG1310 WD40 repeat protein [G 99.1 2.2E-09 4.7E-14 114.7 15.8 161 232-405 49-230 (758)
250 KOG3881 Uncharacterized conser 99.1 1.8E-08 3.9E-13 104.2 21.8 248 136-414 55-328 (412)
251 PF08450 SGL: SMP-30/Gluconola 99.0 3.3E-06 7.1E-11 82.2 33.0 216 195-474 2-243 (246)
252 KOG3914 WD repeat protein WDR4 99.0 6.4E-09 1.4E-13 107.7 13.5 118 281-416 111-233 (390)
253 KOG4497 Uncharacterized conser 99.0 2.2E-08 4.7E-13 102.1 16.9 317 74-484 5-389 (447)
254 PRK04043 tolB translocation pr 99.0 3.6E-07 7.8E-12 97.3 27.1 168 234-416 188-366 (419)
255 KOG1354 Serine/threonine prote 99.0 1.6E-08 3.4E-13 103.5 15.7 224 69-312 61-363 (433)
256 KOG4547 WD40 repeat-containing 99.0 1.8E-08 3.9E-13 108.3 16.9 186 168-385 15-209 (541)
257 TIGR03300 assembly_YfgL outer 99.0 7.6E-07 1.6E-11 91.9 28.5 229 101-360 101-350 (377)
258 KOG2394 WD40 protein DMR-N9 [G 98.9 1.3E-08 2.8E-13 108.7 14.8 91 279-375 292-384 (636)
259 KOG0322 G-protein beta subunit 98.9 3.6E-09 7.8E-14 105.0 9.7 134 255-405 173-322 (323)
260 PF13360 PQQ_2: PQQ-like domai 98.9 7.9E-07 1.7E-11 84.7 25.3 212 169-413 4-237 (238)
261 KOG1523 Actin-related protein 98.9 6.9E-08 1.5E-12 98.0 18.5 210 233-482 10-232 (361)
262 KOG2321 WD40 repeat protein [G 98.9 1.6E-07 3.6E-12 101.0 21.9 277 64-385 36-333 (703)
263 PRK04043 tolB translocation pr 98.9 7.8E-07 1.7E-11 94.7 26.4 200 196-416 191-409 (419)
264 KOG1064 RAVE (regulator of V-A 98.9 5.3E-09 1.2E-13 122.8 9.8 179 203-416 2218-2408(2439)
265 PF13360 PQQ_2: PQQ-like domai 98.9 4.2E-06 9.1E-11 79.7 27.7 212 213-485 1-229 (238)
266 KOG4497 Uncharacterized conser 98.9 6E-08 1.3E-12 98.9 15.3 196 239-483 14-237 (447)
267 PF07433 DUF1513: Protein of u 98.8 3E-06 6.6E-11 86.6 26.2 208 197-416 9-257 (305)
268 COG5170 CDC55 Serine/threonine 98.8 6.3E-08 1.4E-12 98.2 12.7 245 194-480 28-361 (460)
269 PF00400 WD40: WD domain, G-be 98.8 1.3E-08 2.9E-13 71.4 5.6 27 458-484 13-39 (39)
270 KOG2139 WD40 repeat protein [G 98.8 1E-07 2.2E-12 98.2 13.6 137 292-484 112-266 (445)
271 PRK11138 outer membrane biogen 98.8 1.7E-05 3.7E-10 82.9 30.6 272 102-416 66-363 (394)
272 KOG2315 Predicted translation 98.7 1.8E-06 3.8E-11 92.9 22.5 278 97-412 75-395 (566)
273 KOG0309 Conserved WD40 repeat- 98.7 9.2E-08 2E-12 105.2 11.5 278 97-407 26-340 (1081)
274 COG5354 Uncharacterized protei 98.7 4.3E-06 9.2E-11 89.3 23.6 262 113-416 9-315 (561)
275 KOG1064 RAVE (regulator of V-A 98.7 9.2E-08 2E-12 112.7 12.0 210 203-485 2178-2397(2439)
276 KOG1409 Uncharacterized conser 98.7 3.7E-06 8E-11 86.4 21.6 241 74-353 18-274 (404)
277 KOG1523 Actin-related protein 98.7 8.5E-07 1.8E-11 90.2 16.8 249 75-382 5-266 (361)
278 KOG2695 WD40 repeat protein [G 98.6 1.4E-07 3.1E-12 96.6 10.4 147 254-418 231-388 (425)
279 PF08450 SGL: SMP-30/Gluconola 98.6 0.00019 4.2E-09 69.8 31.6 199 168-383 22-243 (246)
280 COG4946 Uncharacterized protei 98.6 1.2E-05 2.6E-10 85.6 24.3 271 87-383 217-506 (668)
281 PF00400 WD40: WD domain, G-be 98.6 9E-08 1.9E-12 67.1 6.0 39 350-404 1-39 (39)
282 KOG3914 WD repeat protein WDR4 98.6 6.3E-07 1.4E-11 93.1 13.4 156 197-358 67-233 (390)
283 PF15492 Nbas_N: Neuroblastoma 98.6 4.5E-05 9.7E-10 76.9 25.8 224 198-485 3-258 (282)
284 COG2706 3-carboxymuconate cycl 98.6 0.00021 4.6E-09 73.9 31.0 263 168-483 16-318 (346)
285 PF15492 Nbas_N: Neuroblastoma 98.5 4.4E-05 9.4E-10 76.9 24.8 188 197-418 48-271 (282)
286 COG2706 3-carboxymuconate cycl 98.5 0.00038 8.3E-09 72.0 31.0 271 114-411 15-328 (346)
287 KOG4190 Uncharacterized conser 98.5 2.7E-07 5.9E-12 98.9 8.3 168 269-484 727-904 (1034)
288 KOG0280 Uncharacterized conser 98.5 9.6E-06 2.1E-10 82.0 18.7 132 237-376 125-264 (339)
289 PF04762 IKI3: IKI3 family; I 98.5 0.00042 9.2E-09 80.9 34.6 269 99-406 213-519 (928)
290 PF07433 DUF1513: Protein of u 98.5 8.6E-05 1.9E-09 76.2 25.0 220 140-384 8-275 (305)
291 PRK11138 outer membrane biogen 98.4 0.00015 3.4E-09 75.7 27.0 226 101-358 116-363 (394)
292 COG4946 Uncharacterized protei 98.4 6.8E-05 1.5E-09 80.0 24.0 191 203-414 276-485 (668)
293 KOG0882 Cyclophilin-related pe 98.4 4.9E-06 1.1E-10 87.9 14.6 264 92-415 6-314 (558)
294 KOG0309 Conserved WD40 repeat- 98.3 2.6E-06 5.6E-11 94.1 11.1 248 77-349 54-339 (1081)
295 PF04762 IKI3: IKI3 family; I 98.3 0.0012 2.6E-08 77.1 33.3 249 93-357 73-344 (928)
296 PF14583 Pectate_lyase22: Olig 98.3 0.001 2.2E-08 70.4 29.4 314 121-483 16-378 (386)
297 KOG4190 Uncharacterized conser 98.3 3E-06 6.6E-11 91.1 10.8 214 127-357 727-957 (1034)
298 KOG1409 Uncharacterized conser 98.3 1.8E-05 4E-10 81.4 15.3 215 206-484 37-268 (404)
299 KOG4532 WD40-like repeat conta 98.2 0.00013 2.9E-09 73.3 19.9 226 204-479 83-325 (344)
300 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0013 2.8E-08 68.2 26.6 240 113-384 21-299 (353)
301 KOG0280 Uncharacterized conser 98.2 6.3E-05 1.4E-09 76.2 15.8 194 197-409 126-336 (339)
302 COG5170 CDC55 Serine/threonine 98.2 3.3E-05 7.2E-10 78.8 13.7 266 94-385 25-357 (460)
303 COG3391 Uncharacterized conser 98.1 0.012 2.6E-07 62.0 32.6 270 117-418 13-295 (381)
304 cd00216 PQQ_DH Dehydrogenases 98.1 0.0051 1.1E-07 66.8 30.2 279 103-416 59-434 (488)
305 PRK02888 nitrous-oxide reducta 98.1 0.00042 9.2E-09 77.0 21.4 186 203-418 202-426 (635)
306 KOG1832 HIV-1 Vpr-binding prot 98.1 2.2E-06 4.8E-11 96.0 3.2 188 197-417 1106-1302(1516)
307 PF02897 Peptidase_S9_N: Proly 98.0 0.02 4.3E-07 60.1 32.3 245 138-411 125-409 (414)
308 KOG1832 HIV-1 Vpr-binding prot 98.0 2.7E-06 5.9E-11 95.4 3.3 246 37-334 1057-1315(1516)
309 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.053 1.1E-06 59.8 35.2 281 104-418 68-502 (527)
310 PF06433 Me-amine-dh_H: Methyl 97.9 0.019 4.1E-07 60.0 28.7 278 115-417 17-331 (342)
311 smart00320 WD40 WD40 repeats. 97.9 5.4E-05 1.2E-09 48.7 5.9 27 458-484 14-40 (40)
312 COG0823 TolB Periplasmic compo 97.8 0.00072 1.6E-08 72.6 17.3 145 233-385 192-345 (425)
313 PRK02888 nitrous-oxide reducta 97.8 0.0028 6.2E-08 70.6 21.3 206 193-417 235-484 (635)
314 KOG4532 WD40-like repeat conta 97.8 0.00046 1E-08 69.5 13.3 142 209-351 132-285 (344)
315 KOG2695 WD40 repeat protein [G 97.7 8.8E-05 1.9E-09 76.6 8.4 137 294-485 228-375 (425)
316 COG3391 Uncharacterized conser 97.7 0.055 1.2E-06 57.0 28.8 231 194-482 32-279 (381)
317 PF06433 Me-amine-dh_H: Methyl 97.6 0.041 8.9E-07 57.5 25.8 266 162-484 12-318 (342)
318 PF04053 Coatomer_WDAD: Coatom 97.6 0.013 2.8E-07 63.4 22.7 214 194-483 34-259 (443)
319 KOG0882 Cyclophilin-related pe 97.6 0.0004 8.6E-09 73.9 10.8 217 135-417 8-242 (558)
320 PRK10115 protease 2; Provision 97.6 0.17 3.8E-06 57.6 32.6 243 137-409 127-397 (686)
321 PF14583 Pectate_lyase22: Olig 97.6 0.041 9E-07 58.4 25.3 264 105-385 48-370 (386)
322 smart00320 WD40 WD40 repeats. 97.5 0.00031 6.8E-09 45.0 5.3 38 310-347 2-40 (40)
323 KOG2314 Translation initiation 97.4 0.0044 9.4E-08 67.6 16.0 179 197-384 215-412 (698)
324 KOG2041 WD40 repeat protein [G 97.4 0.00043 9.3E-09 76.9 8.2 150 282-485 19-185 (1189)
325 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.22 4.8E-06 50.6 27.9 109 105-232 23-132 (354)
326 PF00780 CNH: CNH domain; Int 97.3 0.19 4.2E-06 49.4 26.2 195 195-418 38-267 (275)
327 KOG2041 WD40 repeat protein [G 97.3 0.018 3.9E-07 64.6 18.9 347 105-483 26-457 (1189)
328 PF02897 Peptidase_S9_N: Proly 97.2 0.2 4.3E-06 52.6 25.2 205 197-416 128-367 (414)
329 cd00216 PQQ_DH Dehydrogenases 97.2 0.22 4.8E-06 54.2 25.9 226 105-339 156-456 (488)
330 COG3386 Gluconolactonase [Carb 97.1 0.18 3.9E-06 52.1 23.7 189 207-417 39-253 (307)
331 PF04841 Vps16_N: Vps16, N-ter 97.1 0.05 1.1E-06 58.1 20.3 51 258-312 62-112 (410)
332 KOG1275 PAB-dependent poly(A) 97.1 0.0051 1.1E-07 70.2 13.1 174 289-484 146-340 (1118)
333 COG0823 TolB Periplasmic compo 97.1 0.012 2.5E-07 63.4 14.9 179 197-385 197-389 (425)
334 PF06977 SdiA-regulated: SdiA- 97.1 0.16 3.5E-06 50.9 21.8 191 130-339 16-240 (248)
335 KOG1912 WD40 repeat protein [G 97.1 0.063 1.4E-06 60.9 20.3 233 197-484 20-302 (1062)
336 PF00780 CNH: CNH domain; Int 97.0 0.41 8.9E-06 47.1 27.0 231 105-360 7-267 (275)
337 TIGR03118 PEPCTERM_chp_1 conse 97.0 0.55 1.2E-05 48.7 24.8 211 191-419 21-292 (336)
338 KOG4714 Nucleoporin [Nuclear s 96.9 0.0035 7.6E-08 63.1 8.5 153 300-485 159-317 (319)
339 PF11768 DUF3312: Protein of u 96.8 0.0044 9.5E-08 67.9 8.7 67 368-485 262-328 (545)
340 KOG4714 Nucleoporin [Nuclear s 96.8 0.0043 9.4E-08 62.4 7.8 97 258-354 160-259 (319)
341 KOG1008 Uncharacterized conser 96.6 0.0006 1.3E-08 75.1 0.7 160 275-485 100-274 (783)
342 KOG1275 PAB-dependent poly(A) 96.6 0.035 7.6E-07 63.7 14.4 178 204-404 146-340 (1118)
343 COG3386 Gluconolactonase [Carb 96.5 0.7 1.5E-05 47.8 22.2 203 168-385 47-275 (307)
344 PF06977 SdiA-regulated: SdiA- 96.5 1.1 2.4E-05 45.0 23.7 185 195-383 24-239 (248)
345 KOG1008 Uncharacterized conser 96.5 0.00054 1.2E-08 75.5 -0.8 191 105-308 70-275 (783)
346 KOG1920 IkappaB kinase complex 96.5 0.18 3.9E-06 59.6 19.3 113 324-484 199-320 (1265)
347 PF00930 DPPIV_N: Dipeptidyl p 96.4 1.4 3E-05 45.7 29.9 261 95-385 42-347 (353)
348 PF11768 DUF3312: Protein of u 96.4 0.28 6E-06 54.2 19.2 91 303-410 239-333 (545)
349 PF04841 Vps16_N: Vps16, N-ter 96.4 0.58 1.3E-05 50.0 21.4 49 216-269 62-112 (410)
350 KOG3617 WD40 and TPR repeat-co 96.4 0.16 3.4E-06 58.4 17.3 282 143-484 22-331 (1416)
351 PRK10115 protease 2; Provision 96.4 1.8 3.9E-05 49.5 26.3 182 197-385 131-334 (686)
352 PF05096 Glu_cyclase_2: Glutam 96.4 1.4 3.1E-05 44.8 25.0 172 225-415 33-212 (264)
353 PRK13616 lipoprotein LpqB; Pro 96.3 0.37 8.1E-06 54.1 20.2 186 137-342 350-561 (591)
354 KOG2066 Vacuolar assembly/sort 96.2 0.17 3.7E-06 57.5 16.6 140 104-266 82-234 (846)
355 KOG1912 WD40 repeat protein [G 96.2 0.034 7.4E-07 62.9 10.9 126 272-416 8-153 (1062)
356 KOG4640 Anaphase-promoting com 96.1 0.027 5.8E-07 62.4 9.6 77 322-414 22-100 (665)
357 PF07995 GSDH: Glucose / Sorbo 96.0 2.4 5.2E-05 44.0 25.0 99 193-296 2-130 (331)
358 PF03178 CPSF_A: CPSF A subuni 95.9 0.92 2E-05 46.2 19.5 172 258-484 3-200 (321)
359 KOG4649 PQQ (pyrrolo-quinoline 95.9 0.92 2E-05 46.3 18.6 227 103-349 103-351 (354)
360 PF04053 Coatomer_WDAD: Coatom 95.9 0.31 6.8E-06 52.8 16.5 134 280-483 35-170 (443)
361 PRK13616 lipoprotein LpqB; Pro 95.8 0.47 1E-05 53.3 18.1 140 234-383 350-514 (591)
362 PF14783 BBS2_Mid: Ciliary BBS 95.8 0.44 9.5E-06 42.4 14.3 77 280-360 2-82 (111)
363 KOG2444 WD40 repeat protein [G 95.7 0.021 4.6E-07 56.5 6.3 133 292-485 32-176 (238)
364 KOG1920 IkappaB kinase complex 95.7 2.3 5.1E-05 50.7 23.1 253 96-381 69-361 (1265)
365 KOG2066 Vacuolar assembly/sort 95.6 0.26 5.6E-06 56.2 14.8 132 257-417 59-198 (846)
366 PF05096 Glu_cyclase_2: Glutam 95.6 3.1 6.7E-05 42.4 24.6 193 127-339 35-250 (264)
367 PF08553 VID27: VID27 cytoplas 95.5 0.4 8.8E-06 55.4 16.1 132 256-406 503-647 (794)
368 KOG1645 RING-finger-containing 95.3 0.04 8.8E-07 58.3 6.9 126 259-385 175-307 (463)
369 KOG1645 RING-finger-containing 95.3 0.034 7.4E-07 58.9 6.3 75 356-485 189-265 (463)
370 TIGR02604 Piru_Ver_Nterm putat 95.2 1.4 3E-05 46.1 18.1 81 301-384 48-142 (367)
371 PF07995 GSDH: Glucose / Sorbo 95.1 0.43 9.3E-06 49.4 13.8 63 322-385 3-72 (331)
372 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.9 7.7 0.00017 43.0 25.3 193 204-412 69-339 (527)
373 PF08553 VID27: VID27 cytoplas 94.8 1.8 3.9E-05 50.3 18.7 129 292-475 495-637 (794)
374 PF10647 Gmad1: Lipoprotein Lp 94.8 4.9 0.00011 40.1 23.5 169 138-356 25-204 (253)
375 TIGR02604 Piru_Ver_Nterm putat 94.8 1.5 3.2E-05 46.0 16.8 141 235-384 15-202 (367)
376 PF03178 CPSF_A: CPSF A subuni 94.7 5.8 0.00013 40.4 25.8 60 290-349 139-202 (321)
377 KOG1916 Nuclear protein, conta 94.6 0.013 2.8E-07 67.0 1.2 100 297-411 202-328 (1283)
378 KOG2114 Vacuolar assembly/sort 94.6 4.3 9.3E-05 47.1 20.6 199 199-418 30-256 (933)
379 COG3490 Uncharacterized protei 94.5 2.1 4.6E-05 44.3 16.3 169 198-382 40-242 (366)
380 KOG2079 Vacuolar assembly/sort 94.3 0.18 3.8E-06 59.1 9.1 71 335-419 102-173 (1206)
381 TIGR03606 non_repeat_PQQ dehyd 93.9 3.2 6.9E-05 45.4 17.5 106 234-341 30-166 (454)
382 COG3204 Uncharacterized protei 93.7 5.7 0.00012 41.2 17.8 183 138-338 87-301 (316)
383 PF13449 Phytase-like: Esteras 93.7 7.4 0.00016 40.2 19.1 66 322-387 86-168 (326)
384 KOG2114 Vacuolar assembly/sort 93.5 2 4.3E-05 49.7 15.3 106 287-404 32-153 (933)
385 KOG2079 Vacuolar assembly/sort 93.4 0.36 7.9E-06 56.6 9.5 93 291-385 100-195 (1206)
386 PF14783 BBS2_Mid: Ciliary BBS 93.2 5.4 0.00012 35.6 14.7 99 235-344 1-109 (111)
387 KOG3621 WD40 repeat-containing 92.9 0.44 9.6E-06 53.7 9.0 115 320-482 33-150 (726)
388 KOG2444 WD40 repeat protein [G 92.7 0.32 6.9E-06 48.4 6.8 104 290-406 70-177 (238)
389 COG3490 Uncharacterized protei 92.3 8.8 0.00019 39.9 16.6 205 197-412 72-316 (366)
390 KOG3617 WD40 and TPR repeat-co 91.9 0.3 6.5E-06 56.1 6.3 100 328-484 23-129 (1416)
391 TIGR03606 non_repeat_PQQ dehyd 91.9 5.4 0.00012 43.6 15.7 72 314-385 23-105 (454)
392 PRK13684 Ycf48-like protein; P 91.7 18 0.0004 37.5 23.6 147 194-348 174-330 (334)
393 PLN00033 photosystem II stabil 91.2 17 0.00037 39.1 18.4 135 203-346 248-396 (398)
394 PF14870 PSII_BNR: Photosynthe 91.0 21 0.00047 37.0 24.2 109 319-479 143-255 (302)
395 PF10647 Gmad1: Lipoprotein Lp 90.8 19 0.00041 35.9 20.3 141 235-385 25-185 (253)
396 PF05935 Arylsulfotrans: Aryls 90.2 17 0.00037 39.8 17.7 151 204-364 114-317 (477)
397 TIGR03074 PQQ_membr_DH membran 89.3 50 0.0011 38.6 25.6 169 244-416 194-432 (764)
398 KOG2395 Protein involved in va 89.3 5.5 0.00012 44.2 12.7 130 257-405 356-499 (644)
399 KOG2280 Vacuolar assembly/sort 89.1 6.6 0.00014 45.1 13.5 144 257-415 64-255 (829)
400 KOG4640 Anaphase-promoting com 89.1 1.3 2.9E-05 49.5 8.0 69 366-484 21-90 (665)
401 PF14655 RAB3GAP2_N: Rab3 GTPa 89.0 3.1 6.8E-05 44.9 10.7 93 229-335 301-415 (415)
402 KOG2395 Protein involved in va 88.9 5.2 0.00011 44.4 12.2 130 292-474 347-489 (644)
403 COG3823 Glutamine cyclotransfe 88.8 14 0.00031 36.8 14.0 175 198-383 51-247 (262)
404 PF12894 Apc4_WD40: Anaphase-p 88.8 1 2.2E-05 34.0 4.8 33 321-353 12-45 (47)
405 TIGR03074 PQQ_membr_DH membran 88.4 58 0.0012 38.1 26.6 66 340-416 413-487 (764)
406 PF11715 Nup160: Nucleoporin N 88.1 0.98 2.1E-05 49.6 6.3 39 368-417 217-259 (547)
407 KOG3621 WD40 repeat-containing 87.6 2.1 4.5E-05 48.6 8.3 118 95-224 35-155 (726)
408 PF07569 Hira: TUP1-like enhan 87.3 5.7 0.00012 39.1 10.5 71 282-352 14-98 (219)
409 PF07569 Hira: TUP1-like enhan 87.1 2.9 6.2E-05 41.1 8.3 68 88-155 5-85 (219)
410 KOG1916 Nuclear protein, conta 86.9 0.19 4.2E-06 57.9 0.0 145 200-351 243-425 (1283)
411 KOG4499 Ca2+-binding protein R 86.7 26 0.00055 35.7 14.6 139 139-287 111-263 (310)
412 PF12894 Apc4_WD40: Anaphase-p 86.7 1.3 2.8E-05 33.4 4.4 27 458-484 13-39 (47)
413 PF07250 Glyoxal_oxid_N: Glyox 86.5 8.6 0.00019 38.7 11.4 77 303-385 49-137 (243)
414 PRK13684 Ycf48-like protein; P 86.0 46 0.001 34.5 29.0 142 234-384 173-321 (334)
415 PF08801 Nucleoporin_N: Nup133 85.9 3.5 7.6E-05 43.8 8.8 28 458-485 191-218 (422)
416 PF12234 Rav1p_C: RAVE protein 85.5 27 0.00058 39.9 15.8 111 235-348 31-155 (631)
417 COG3823 Glutamine cyclotransfe 84.5 47 0.001 33.3 15.5 170 256-474 67-247 (262)
418 PF15390 DUF4613: Domain of un 84.5 14 0.0003 41.7 12.6 149 222-384 2-174 (671)
419 PF05935 Arylsulfotrans: Aryls 83.8 72 0.0016 34.9 22.6 156 244-419 114-314 (477)
420 PHA02713 hypothetical protein; 83.8 64 0.0014 36.0 17.8 203 105-321 304-546 (557)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 83.6 7.6 0.00017 42.0 10.1 89 314-416 301-408 (415)
422 PF08596 Lgl_C: Lethal giant l 83.4 70 0.0015 34.4 21.1 166 233-417 86-301 (395)
423 PF07250 Glyoxal_oxid_N: Glyox 82.9 22 0.00049 35.7 12.5 138 260-416 49-207 (243)
424 PF11715 Nup160: Nucleoporin N 82.4 6.1 0.00013 43.4 9.1 39 321-359 215-259 (547)
425 KOG3630 Nuclear pore complex, 81.6 10 0.00023 45.4 10.8 104 282-386 160-264 (1405)
426 PHA02713 hypothetical protein; 80.9 67 0.0015 35.9 16.6 190 204-412 303-539 (557)
427 PF12234 Rav1p_C: RAVE protein 80.9 31 0.00067 39.4 14.0 84 296-384 47-147 (631)
428 TIGR02276 beta_rpt_yvtn 40-res 80.7 6.8 0.00015 27.2 5.9 41 288-329 1-42 (42)
429 PF03022 MRJP: Major royal jel 80.5 71 0.0015 32.6 17.7 158 219-385 38-255 (287)
430 PF13449 Phytase-like: Esteras 79.7 35 0.00077 35.2 13.2 80 368-476 87-166 (326)
431 PF14269 Arylsulfotran_2: Aryl 79.6 79 0.0017 32.6 22.1 91 257-348 96-219 (299)
432 PF08596 Lgl_C: Lethal giant l 78.6 1E+02 0.0022 33.2 23.9 264 97-385 3-326 (395)
433 TIGR03032 conserved hypothetic 77.7 21 0.00046 37.5 10.6 110 195-333 205-317 (335)
434 KOG4441 Proteins containing BT 76.4 1.4E+02 0.003 33.7 21.0 226 105-348 285-545 (571)
435 PF07676 PD40: WD40-like Beta 75.9 11 0.00024 26.2 5.7 18 368-385 11-28 (39)
436 PLN00033 photosystem II stabil 75.1 1.3E+02 0.0027 32.5 31.2 144 288-481 248-394 (398)
437 PHA03098 kelch-like protein; P 74.6 1.4E+02 0.0029 32.7 19.8 147 204-354 342-516 (534)
438 PF10395 Utp8: Utp8 family; I 74.4 99 0.0021 35.7 15.5 163 95-274 129-314 (670)
439 PF07676 PD40: WD40-like Beta 74.2 11 0.00023 26.2 5.3 28 319-346 7-38 (39)
440 TIGR02276 beta_rpt_yvtn 40-res 72.9 15 0.00033 25.4 5.9 38 204-241 2-41 (42)
441 COG3204 Uncharacterized protei 70.6 1.4E+02 0.0031 31.2 19.9 181 195-379 88-297 (316)
442 KOG4441 Proteins containing BT 70.1 1.9E+02 0.0042 32.5 20.6 228 166-410 299-550 (571)
443 KOG1900 Nuclear pore complex, 69.4 32 0.00069 42.0 10.6 29 457-485 243-271 (1311)
444 KOG1897 Damage-specific DNA bi 68.6 2.7E+02 0.0059 33.6 19.5 180 116-308 751-942 (1096)
445 KOG4659 Uncharacterized conser 66.2 3.5E+02 0.0075 34.0 18.4 84 369-475 596-680 (1899)
446 PF14761 HPS3_N: Hermansky-Pud 63.1 22 0.00048 35.3 6.6 47 106-154 29-77 (215)
447 PHA03098 kelch-like protein; P 62.8 2.3E+02 0.0051 30.8 19.7 191 204-410 294-515 (534)
448 COG1506 DAP2 Dipeptidyl aminop 61.0 2.4E+02 0.0052 31.9 15.4 144 232-385 58-235 (620)
449 PF08728 CRT10: CRT10; InterP 60.9 85 0.0018 36.5 11.7 101 204-307 113-245 (717)
450 PF14761 HPS3_N: Hermansky-Pud 60.8 37 0.0008 33.7 7.7 58 322-385 19-79 (215)
451 TIGR03118 PEPCTERM_chp_1 conse 60.4 2.3E+02 0.005 30.0 21.2 174 235-415 24-238 (336)
452 KOG2247 WD40 repeat-containing 59.2 0.82 1.8E-05 50.0 -4.3 150 203-357 44-196 (615)
453 PF10313 DUF2415: Uncharacteri 59.0 21 0.00045 26.7 4.3 28 458-485 2-32 (43)
454 PF10313 DUF2415: Uncharacteri 58.5 30 0.00064 25.9 5.0 31 279-309 2-34 (43)
455 COG1520 FOG: WD40-like repeat 58.2 2.3E+02 0.0051 29.3 22.4 107 203-315 67-178 (370)
456 PF07202 Tcp10_C: T-complex pr 57.5 1.9E+02 0.004 28.0 22.7 29 368-411 147-175 (179)
457 PF12768 Rax2: Cortical protei 57.3 1.6E+02 0.0034 30.4 11.9 82 300-381 16-105 (281)
458 KOG2377 Uncharacterized conser 56.1 2.4E+02 0.0053 31.4 13.4 65 197-265 27-96 (657)
459 PHA02790 Kelch-like protein; P 55.7 3.1E+02 0.0067 29.9 18.8 190 204-410 271-474 (480)
460 KOG1897 Damage-specific DNA bi 53.4 4.9E+02 0.011 31.6 21.4 145 197-346 779-939 (1096)
461 PF14870 PSII_BNR: Photosynthe 53.3 2.8E+02 0.0061 28.8 30.9 121 280-415 147-269 (302)
462 PF03088 Str_synth: Strictosid 52.4 34 0.00073 29.3 5.2 37 342-383 38-74 (89)
463 PF05694 SBP56: 56kDa selenium 51.2 2.8E+02 0.0061 30.6 13.0 127 257-383 222-391 (461)
464 PF10168 Nup88: Nuclear pore c 50.9 2.4E+02 0.0051 33.0 13.3 78 138-226 86-182 (717)
465 PF01436 NHL: NHL repeat; Int 50.8 44 0.00095 22.0 4.5 27 193-220 2-28 (28)
466 TIGR03032 conserved hypothetic 48.3 1.7E+02 0.0036 31.0 10.5 97 304-416 189-300 (335)
467 smart00564 PQQ beta-propeller 46.7 44 0.00095 22.0 4.1 25 105-129 6-30 (33)
468 PF01436 NHL: NHL repeat; Int 46.5 52 0.0011 21.7 4.4 25 321-345 2-27 (28)
469 PF02333 Phytase: Phytase; In 45.9 4.2E+02 0.0091 28.6 25.0 192 105-309 68-291 (381)
470 PF10168 Nup88: Nuclear pore c 45.5 5.6E+02 0.012 30.0 17.1 33 278-310 147-181 (717)
471 PF15390 DUF4613: Domain of un 44.4 4.7E+02 0.01 30.1 13.7 79 273-360 15-107 (671)
472 PF12768 Rax2: Cortical protei 43.7 3.8E+02 0.0083 27.5 15.2 96 164-265 12-123 (281)
473 PF01011 PQQ: PQQ enzyme repea 43.0 37 0.00081 23.7 3.5 27 107-133 2-28 (38)
474 PF05694 SBP56: 56kDa selenium 42.5 5.1E+02 0.011 28.7 25.4 192 205-407 88-343 (461)
475 PF02333 Phytase: Phytase; In 42.3 4.7E+02 0.01 28.2 24.3 131 243-384 66-226 (381)
476 KOG4499 Ca2+-binding protein R 42.1 4.1E+02 0.0088 27.4 21.7 100 304-418 133-253 (310)
477 COG5167 VID27 Protein involved 42.1 3.6E+02 0.0077 30.7 12.1 121 257-385 490-623 (776)
478 PF14727 PHTB1_N: PTHB1 N-term 42.0 4.9E+02 0.011 28.4 18.1 139 204-348 36-203 (418)
479 PF08728 CRT10: CRT10; InterP 41.8 1.8E+02 0.004 33.9 10.4 101 290-405 114-245 (717)
480 COG4590 ABC-type uncharacteriz 39.7 1.8E+02 0.0038 32.5 9.3 95 291-407 281-387 (733)
481 COG2133 Glucose/sorbosone dehy 38.5 2.9E+02 0.0064 30.0 10.8 18 368-385 179-196 (399)
482 PF05787 DUF839: Bacterial pro 38.1 90 0.0019 34.9 7.2 16 458-473 503-518 (524)
483 PF01731 Arylesterase: Arylest 36.7 1.1E+02 0.0024 25.9 6.0 43 350-407 43-85 (86)
484 PF14269 Arylsulfotran_2: Aryl 36.1 5E+02 0.011 26.7 22.8 71 235-307 145-219 (299)
485 KOG4659 Uncharacterized conser 34.6 1.1E+03 0.023 30.1 22.2 59 323-382 595-678 (1899)
486 KOG1983 Tomosyn and related SN 33.6 7.9E+02 0.017 29.9 14.4 28 195-223 38-65 (993)
487 PHA02790 Kelch-like protein; P 33.3 6.7E+02 0.015 27.3 16.5 139 204-349 318-470 (480)
488 PF10411 DsbC_N: Disulfide bon 32.9 42 0.0009 26.0 2.6 16 369-384 34-49 (57)
489 PF13570 PQQ_3: PQQ-like domai 32.8 68 0.0015 22.4 3.5 24 101-124 17-40 (40)
490 PF12657 TFIIIC_delta: Transcr 32.7 2.5E+02 0.0055 26.1 8.4 30 321-350 86-122 (173)
491 PF11635 Med16: Mediator compl 32.6 1.9E+02 0.004 33.8 8.9 69 61-129 225-295 (753)
492 PF10214 Rrn6: RNA polymerase 31.9 3.4E+02 0.0073 31.7 10.8 92 280-376 148-257 (765)
493 KOG2280 Vacuolar assembly/sort 31.6 9.4E+02 0.02 28.5 14.8 67 288-356 42-119 (829)
494 PF03088 Str_synth: Strictosid 31.4 1.5E+02 0.0033 25.2 6.0 48 298-346 35-85 (89)
495 TIGR02608 delta_60_rpt delta-6 30.7 1.7E+02 0.0037 22.8 5.6 19 138-156 2-20 (55)
496 PF13570 PQQ_3: PQQ-like domai 30.5 1.4E+02 0.0031 20.7 4.9 21 289-309 20-40 (40)
497 TIGR02171 Fb_sc_TIGR02171 Fibr 30.1 9.8E+02 0.021 28.9 13.9 109 95-213 349-471 (912)
498 COG5167 VID27 Protein involved 28.6 1.3E+02 0.0028 34.0 6.2 60 290-349 573-632 (776)
499 TIGR02608 delta_60_rpt delta-6 28.4 68 0.0015 25.1 3.0 19 458-476 2-20 (55)
500 PF12341 DUF3639: Protein of u 28.0 1.1E+02 0.0024 20.7 3.6 26 96-121 2-27 (27)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-54 Score=438.39 Aligned_cols=321 Identities=13% Similarity=0.198 Sum_probs=289.7
Q ss_pred ccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 93 RKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
-|.++|.++.|+ +..||+||-|.|+|+||..|..++.|..+ |.++|-+|+++|||+.|||++.+ .+|
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk~iASG~~d----------g~I 181 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGKKIASGSKD----------GSI 181 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcchhhccccC----------CeE
Confidence 488889999999 89999999999999999999999999988 99999999999999999997743 499
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeC----CCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCC
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPG 244 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~----pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg 244 (485)
+|||..+|+... .+|- +|.+|+..++|-| |..++|||+|.|++|||||+..++|++++.+| .|.+|.+--+
T Consensus 182 ~lwdpktg~~~g-~~l~--gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 182 RLWDPKTGQQIG-RALR--GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred EEecCCCCCccc-cccc--CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence 999999998732 3333 3678999998853 56889999999999999999999999999764 7999999866
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEe-----------------------------------cC
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE-----------------------------------QF 289 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~-----------------------------------~~ 289 (485)
+.+.++ +.|.|||+|+..+|+++.+|+||.|+|+.++.+. +.
T Consensus 259 gliySg---S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 259 GLIYSG---SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred ceEEec---CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 666543 5679999999999999999999999999888761 12
Q ss_pred CCEEEEEeCCCcEEEEECC-CCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCC
Q 011452 290 NEKLLVKQENENLQILDVR-NFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~-tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~ 366 (485)
+|.|+++++|.|+-+|+.. +.+++..+.||+.-|+.|.||||++++||+| |..|||||.+ |+.+.+|.||-..
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~---- 411 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA---- 411 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce----
Confidence 3579999999999999965 5568999999999999999999999999999 9999999996 9999999999988
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccc
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHAS 446 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (485)
|+.|++|.|.++|+|||+ |.|+|+||+.|.|....|.||.+
T Consensus 412 -VYqvawsaDsRLlVS~Sk-----------DsTLKvw~V~tkKl~~DLpGh~D--------------------------- 452 (480)
T KOG0271|consen 412 -VYQVAWSADSRLLVSGSK-----------DSTLKVWDVRTKKLKQDLPGHAD--------------------------- 452 (480)
T ss_pred -eEEEEeccCccEEEEcCC-----------CceEEEEEeeeeeecccCCCCCc---------------------------
Confidence 999999999999999998 79999999999999999999985
Q ss_pred ccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 447 RIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 447 ~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|++|.++|||+.++||+.|+.+|||.
T Consensus 453 -----------EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 453 -----------EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -----------eEEEEEecCCCceeecCCCceEEEeec
Confidence 899999999999999999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-47 Score=391.12 Aligned_cols=282 Identities=14% Similarity=0.123 Sum_probs=254.6
Q ss_pred ecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCC-CCeEEEE
Q 011452 132 NVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV-NGKVLTY 210 (485)
Q Consensus 132 ~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~p-nG~~Las 210 (485)
+.+.+.+|-.++||+|++.|||+|.. +++++|..+++.+. ..|. +|...+..++|.|. ++..|||
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~sws----------G~~kvW~~~~~~~~---~~l~-gH~~~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWS----------GLVKVWSVPQCNLL---QTLR-GHTSRVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecC----------CceeEeecCCccee---EEEe-ccccceeeEEEccCCCccceee
Confidence 44467789999999999999999864 48999999888652 2344 36677889999977 4889999
Q ss_pred eeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec
Q 011452 211 SAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ 288 (485)
Q Consensus 211 ~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~ 288 (485)
||.||++|+|++.+-+++..|.+ ..|..|+|+|+|..|.++ +.|.|-+|||++|++++--.+||...+.+++|. |
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta--sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~-~ 313 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA--SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ-P 313 (459)
T ss_pred eccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec--ccccchhhcccccchhhHhhcccccccceeEec-C
Confidence 99999999999999889888865 489999999966666554 467999999999999999999999999999996 7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCC
Q 011452 289 FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~ 366 (485)
||..+++||.|..-||||+++|.|+.+|.||...|.+|+|||+|..||||+ |+|+||||++ -.+++++.+|.+-
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl---- 389 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL---- 389 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch----
Confidence 787777789999999999999999999999999999999999999999999 9999999998 7789999999988
Q ss_pred CeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccc
Q 011452 367 NTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHA 445 (485)
Q Consensus 367 ~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (485)
|..|.|+| -|++|+|+|. |+|+|||.-.+++|+++|.||++
T Consensus 390 -VS~Vk~~p~~g~fL~Tasy-----------D~t~kiWs~~~~~~~ksLaGHe~-------------------------- 431 (459)
T KOG0272|consen 390 -VSQVKYSPQEGYFLVTASY-----------DNTVKIWSTRTWSPLKSLAGHEG-------------------------- 431 (459)
T ss_pred -hhheEecccCCeEEEEccc-----------CcceeeecCCCcccchhhcCCcc--------------------------
Confidence 99999999 8999999998 79999999999999999999984
Q ss_pred cccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 446 SRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 446 ~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|.+|+++|||+.|+|+|.|.|+|||.
T Consensus 432 ------------kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 432 ------------KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ------------ceEEEEeccCCceEEEeccCceeeecc
Confidence 899999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-47 Score=383.27 Aligned_cols=285 Identities=15% Similarity=0.224 Sum_probs=251.6
Q ss_pred cEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCC
Q 011452 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVN 204 (485)
Q Consensus 126 ~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pn 204 (485)
.|-..+.| |.+.|-|+.|+|+|..|||+| .| .|+||||+.+..+ +|+. +|..|+-+|+++ ||
T Consensus 106 rCssS~~G-H~e~Vl~~~fsp~g~~l~tGs----GD------~TvR~WD~~TeTp-----~~t~KgH~~WVlcvaws-PD 168 (480)
T KOG0271|consen 106 RCSSSIAG-HGEAVLSVQFSPTGSRLVTGS----GD------TTVRLWDLDTETP-----LFTCKGHKNWVLCVAWS-PD 168 (480)
T ss_pred eeccccCC-CCCcEEEEEecCCCceEEecC----CC------ceEEeeccCCCCc-----ceeecCCccEEEEEEEC-CC
Confidence 34556777 999999999999999999976 34 5999999876655 5665 678899999998 89
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEE-EEEcC--CcEEEEEEcC-----CceEEEEEcCCCCeeEEEEecCCCeEEEEeecC
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTML-YSISD--KNVQEIKISP-----GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l-~tl~~--~~V~~VafSp-----g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~ 276 (485)
|+.||||+.|++|++||.++|+++ .+|.+ .+|.+++|-| +..++++++ .|++|+|||+.-|+|+.++.||
T Consensus 169 gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s--kDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 169 GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS--KDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc--CCCCEEEEEccCceEEEEeccC
Confidence 999999999999999999999965 56655 5899999986 455666544 5689999999999999999999
Q ss_pred CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEc-----------CC--------------
Q 011452 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL-----------YE-------------- 331 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs-----------pd-------------- 331 (485)
+..|..|.+- ..+.|.++|.|+|||+|+...|.|.+.|+||..+|+.++.| |-
T Consensus 247 T~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 247 TASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred ccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 9999999983 24677778999999999999999999999999999999988 22
Q ss_pred -----------CcEEEEEe-CCcEEEEeC-C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 332 -----------NQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 332 -----------g~llaS~s-D~TIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
+..|+|++ |.|+-||+- . -++++.+.||+.- ||.|+|||||++|||+|. |
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l-----Vn~V~fSPd~r~IASaSF-----------D 388 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL-----VNHVSFSPDGRYIASASF-----------D 388 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh-----eeeEEECCCccEEEEeec-----------c
Confidence 34599999 999999998 3 7799999999987 999999999999999999 7
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 398 GSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
.+|||||-.|||.|++|+||-. .|+.|++|.|.+.|+|||.|
T Consensus 389 kSVkLW~g~tGk~lasfRGHv~--------------------------------------~VYqvawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFLASFRGHVA--------------------------------------AVYQVAWSADSRLLVSGSKD 430 (480)
T ss_pred cceeeeeCCCcchhhhhhhccc--------------------------------------eeEEEEeccCccEEEEcCCC
Confidence 9999999999999999999963 89999999999999999999
Q ss_pred CcEEEccC
Q 011452 478 GLVHVWSN 485 (485)
Q Consensus 478 gtVklWd~ 485 (485)
.|+|+|+.
T Consensus 431 sTLKvw~V 438 (480)
T KOG0271|consen 431 STLKVWDV 438 (480)
T ss_pred ceEEEEEe
Confidence 99999984
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-45 Score=376.79 Aligned_cols=265 Identities=16% Similarity=0.142 Sum_probs=237.6
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeC--CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spd--g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~ 182 (485)
++.||++|.+|++|+|+..+++.+++|.| |.+.|-.+.|+|. +..|||+|+| ++++||++..-.+.+
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~D----------gtvklw~~~~e~~l~ 255 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASAD----------GTVKLWKLSQETPLQ 255 (459)
T ss_pred CCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccC----------CceeeeccCCCcchh
Confidence 99999999999999999999999999998 8889999999998 6689998864 499999975544422
Q ss_pred ccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE--EcCCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t--l~~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
-++ +|...+..|+|. |+|++|++++.|.|-||||+.+++++.- .|...|.+|+|.|+|.|++++ +.|..-+
T Consensus 256 ---~l~-gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG--GlD~~~R 328 (459)
T KOG0272|consen 256 ---DLE-GHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG--GLDSLGR 328 (459)
T ss_pred ---hhh-cchhhheeeeec-CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc--Cccchhh
Confidence 223 355667789997 8999999999999999999999996544 455689999999999998774 4678999
Q ss_pred EEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe
Q 011452 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR 339 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s 339 (485)
|||+.+|.++..|.||...|.+|+|+ |.|-.|++||.|+|+||||++...++.++.+|.+-|+.|.|+| .|++|+|++
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred eeecccCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 99999999999999999999999997 5566667789999999999999999999999999999999999 899999999
Q ss_pred -CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 340 -NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 340 -D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
|+|+|||..+ +.++++|.||... |.++.+||||++|+|++. |.|||||.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~k-----V~s~Dis~d~~~i~t~s~-----------DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGK-----VISLDISPDSQAIATSSF-----------DRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccc-----eEEEEeccCCceEEEecc-----------Cceeeecc
Confidence 9999999996 9999999999987 999999999999999998 79999995
No 5
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-41 Score=342.92 Aligned_cols=281 Identities=15% Similarity=0.239 Sum_probs=246.4
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEE
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTY 210 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las 210 (485)
+.+ |...|+.|-|.|+--..+++| +| .++++||..+|++..+ |- +|...+..|+|+ .-|++||+
T Consensus 104 l~g-~r~~vt~v~~hp~~~~v~~as----~d------~tikv~D~~tg~~e~~--Lr--GHt~sv~di~~~-a~Gk~l~t 167 (406)
T KOG0295|consen 104 LAG-HRSSVTRVIFHPSEALVVSAS----ED------ATIKVFDTETGELERS--LR--GHTDSVFDISFD-ASGKYLAT 167 (406)
T ss_pred hhc-cccceeeeeeccCceEEEEec----CC------ceEEEEEccchhhhhh--hh--ccccceeEEEEe-cCccEEEe
Confidence 445 888999999999888777755 45 6999999999998431 22 345567789998 68999999
Q ss_pred eeCCCcEEEeecCC-CeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEe
Q 011452 211 SAQDSIYKVFDLKN-YTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (485)
Q Consensus 211 ~s~D~tiKlWdl~~-g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~ 287 (485)
+|.|=.+++||+.+ ++|+.++++ +.|.+|+|=|-+-.+.|+ +.|+|||.|++.||.|+++|.+|...+.-|+-.
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~--srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~- 244 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSC--SRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN- 244 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeec--ccccceeEEecccceeEEeccCchHhEEEEEec-
Confidence 99999999999987 678888764 689999999944444443 456999999999999999999999999888865
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC---------------CcEEEEEe-CCcEEEEeCC-C
Q 011452 288 QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE---------------NQLFLTFR-NRTVAVWNFR-G 350 (485)
Q Consensus 288 ~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd---------------g~llaS~s-D~TIklWd~~-G 350 (485)
+||..+++++.|.||++|-+.+++|...+++|.+.|.+++|-|+ ||.++++| |+|||+||+. |
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 66666666789999999999999999999999999999999653 47999999 9999999996 9
Q ss_pred cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCC
Q 011452 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSG 430 (485)
Q Consensus 351 ~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~ 430 (485)
.|+.||.||..| |.+++|+|-|+||+|+.+ |+|+|+||+++++|+.++++|+.
T Consensus 325 ~cL~tL~ghdnw-----Vr~~af~p~Gkyi~ScaD-----------Dktlrvwdl~~~~cmk~~~ah~h----------- 377 (406)
T KOG0295|consen 325 MCLFTLVGHDNW-----VRGVAFSPGGKYILSCAD-----------DKTLRVWDLKNLQCMKTLEAHEH----------- 377 (406)
T ss_pred eEEEEEecccce-----eeeeEEcCCCeEEEEEec-----------CCcEEEEEeccceeeeccCCCcc-----------
Confidence 999999999999 999999999999999886 89999999999999999999983
Q ss_pred CCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 431 DYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|+++.|.-+-.+++|||-|.++|+|.
T Consensus 378 ---------------------------fvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 378 ---------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ---------------------------eeEEEecCCCCceEEeccccceeeeee
Confidence 899999999999999999999999995
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9e-40 Score=322.46 Aligned_cols=285 Identities=12% Similarity=0.161 Sum_probs=250.9
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEE
Q 011452 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVL 208 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~L 208 (485)
++|.| |.+.|.++-|++|.+.|+|+|.|| .+-|||--+..-..+++| ...|+-.+||+ |.|+.+
T Consensus 49 r~LkG-H~~Ki~~~~ws~Dsr~ivSaSqDG----------klIvWDs~TtnK~haipl----~s~WVMtCA~s-PSg~~V 112 (343)
T KOG0286|consen 49 RTLKG-HLNKIYAMDWSTDSRRIVSASQDG----------KLIVWDSFTTNKVHAIPL----PSSWVMTCAYS-PSGNFV 112 (343)
T ss_pred EEecc-cccceeeeEecCCcCeEEeeccCC----------eEEEEEcccccceeEEec----CceeEEEEEEC-CCCCeE
Confidence 57887 888999999999999999988643 777999866554333332 33588899998 899999
Q ss_pred EEeeCCCcEEEeecCCC------eEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 209 TYSAQDSIYKVFDLKNY------TMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g------~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
|.|+-|+..-|+++++- .....+.+ ..+.+..|-+++.|+++ ++|.|.-|||+|+|+.+..|.||++-|
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~---SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG---SGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec---CCCceEEEEEcccceEEEEecCCcccE
Confidence 99999999999999855 12344544 57999999999999876 456899999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
.++++.|.++..+++++-|++.+|||++.+.|.+++.||...|++|.|-|+|.-|+||| |+|.+++|++ .+.+..++.
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 99999754788899999999999999999999999999999999999999999999999 9999999997 888888873
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
.. ..+.|++|+||-.|++|..|.. |.++++||..-|+.+.+|.||++
T Consensus 270 -~~--~~~gitSv~FS~SGRlLfagy~-----------d~~c~vWDtlk~e~vg~L~GHeN------------------- 316 (343)
T KOG0286|consen 270 -DS--IICGITSVAFSKSGRLLFAGYD-----------DFTCNVWDTLKGERVGVLAGHEN------------------- 316 (343)
T ss_pred -Cc--ccCCceeEEEcccccEEEeeec-----------CCceeEeeccccceEEEeeccCC-------------------
Confidence 32 3466999999999999999875 79999999999999999999985
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|++|..+|||--|+|||+|.++|||.
T Consensus 317 -------------------RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 317 -------------------RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -------------------eeEEEEECCCCcEEEecchhHheeecC
Confidence 899999999999999999999999994
No 7
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.1e-38 Score=290.18 Aligned_cols=284 Identities=15% Similarity=0.264 Sum_probs=243.3
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~ 207 (485)
++++.+ |...|.++.|+|+++.|++++. + +.+.+|++..++... .+. .+...+..+.|+ |+++.
T Consensus 2 ~~~~~~-h~~~i~~~~~~~~~~~l~~~~~----~------g~i~i~~~~~~~~~~---~~~-~~~~~i~~~~~~-~~~~~ 65 (289)
T cd00200 2 RRTLKG-HTGGVTCVAFSPDGKLLATGSG----D------GTIKVWDLETGELLR---TLK-GHTGPVRDVAAS-ADGTY 65 (289)
T ss_pred chHhcc-cCCCEEEEEEcCCCCEEEEeec----C------cEEEEEEeeCCCcEE---EEe-cCCcceeEEEEC-CCCCE
Confidence 345665 8889999999999999998763 3 599999998776421 122 233344578997 78899
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEE
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f 285 (485)
|++++.|++|++||+.+++.+..+.. ..|.+++|+|++.+++++. .|+.|++||+.+++.+..+..|...+..++|
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS--RDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec--CCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 99999999999999998887777754 4799999998766666644 3589999999999999999988888999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCC
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 363 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~ 363 (485)
. +++..+++++.|+.|++||+++++++..+..|...+.++.|+|+++.|++++ |+.|++||++ ++++..+.+|...
T Consensus 144 ~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~- 221 (289)
T cd00200 144 S-PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG- 221 (289)
T ss_pred c-CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc-
Confidence 7 4455555566799999999999999999999999999999999999999988 9999999997 9999999888876
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccc
Q 011452 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHS 443 (485)
Q Consensus 364 ~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (485)
+..++|+|++.++++++. |++|++||+.+++++..+.+|..
T Consensus 222 ----i~~~~~~~~~~~~~~~~~-----------~~~i~i~~~~~~~~~~~~~~~~~------------------------ 262 (289)
T cd00200 222 ----VNSVAFSPDGYLLASGSE-----------DGTIRVWDLRTGECVQTLSGHTN------------------------ 262 (289)
T ss_pred ----eEEEEEcCCCcEEEEEcC-----------CCcEEEEEcCCceeEEEccccCC------------------------
Confidence 899999999999999875 69999999999999999998862
Q ss_pred cccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 444 HASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 444 ~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|.+++|+|+++.|++++.|+.|++|+
T Consensus 263 --------------~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 263 --------------SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred --------------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 899999999999999999999999997
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-38 Score=310.95 Aligned_cols=296 Identities=13% Similarity=0.163 Sum_probs=234.8
Q ss_pred EEEEeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc--ceeeeccccCceEEEEeCC
Q 011452 127 RICFLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF--ALFESESLKWPGFVEFDDV 203 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~--~lf~~~~~~~~~~V~Fs~p 203 (485)
+.-||++ |.++|..++..+.+ +.|.++| -| .++-+|++..-....|. +.|+. |-..+..|..+ +
T Consensus 7 l~~tl~g-h~d~Vt~la~~~~~~~~l~sas----rD------k~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s-~ 73 (315)
T KOG0279|consen 7 LRGTLEG-HTDWVTALAIKIKNSDILVSAS----RD------KTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLS-S 73 (315)
T ss_pred eeeeecC-CCceEEEEEeecCCCceEEEcc----cc------eEEEEEEeccCccccCceeeeeec-cceEecceEEc-c
Confidence 3447777 88899999999985 4555555 34 68999998443333332 23432 33345568887 7
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC--Ccc
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL--LHR 279 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~--~~~ 279 (485)
||++..|+|.|+++|+||+.+|+....| |...|.+|+|||+..-+++++ .|+||||||+- |.|..++..+ ...
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS--rDkTiklwnt~-g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS--RDKTIKLWNTL-GVCKYTIHEDSHREW 150 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC--Ccceeeeeeec-ccEEEEEecCCCcCc
Confidence 9999999999999999999999876655 556899999998777777654 56999999985 5677777644 577
Q ss_pred eeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 280 NKKVDFIEQF-NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 280 ~~~V~f~~~~-~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
|..|.|+|.. +-+|+++|+|+|||+||+++-++...+.||++.+++++|||||.+.+||+ |+.+-|||++ |+.+++|
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 8899998543 56788889999999999999999999999999999999999999999999 9999999996 9999999
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
++. .. |++++|+|+--.|+-+. +.+|||||+.+++|+.+|+----
T Consensus 231 ~a~-~~-----v~sl~fspnrywL~~at------------~~sIkIwdl~~~~~v~~l~~d~~----------------- 275 (315)
T KOG0279|consen 231 EAF-DI-----VNSLCFSPNRYWLCAAT------------ATSIKIWDLESKAVVEELKLDGI----------------- 275 (315)
T ss_pred cCC-Ce-----EeeEEecCCceeEeecc------------CCceEEEeccchhhhhhcccccc-----------------
Confidence 754 33 99999999988887765 47799999999999999875321
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+..+. .. -.-.+|+||+||++|++|-.|+.|++|..
T Consensus 276 g~s~~~--------~~----~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 276 GPSSKA--------GD----PICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cccccc--------CC----cEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 000000 01 14567999999999999999999999963
No 9
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.3e-38 Score=351.07 Aligned_cols=317 Identities=14% Similarity=0.171 Sum_probs=247.4
Q ss_pred CCeEEeeecccCcEEEEeecC----CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC---cccce
Q 011452 114 SGVCAAFCRETNQRICFLNVT----ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD---AGFAL 186 (485)
Q Consensus 114 dgtiklW~~~tG~~l~tl~g~----~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~---~~~~l 186 (485)
+|.|++|+..+-+....+..+ |.+.|.+|+|+|+|+.||+++. | ++++||++...... ...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~----D------~~I~iwd~~~~~~~~~~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGV----N------KKIKIFECESIIKDGRDIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeC----C------CEEEEEECCcccccccccccce
Confidence 788999998755544444322 7889999999999999999774 4 59999997432111 00111
Q ss_pred eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEe
Q 011452 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWd 263 (485)
........+..++|+++++.+||+++.|++|+|||+.+++++.++. ...|++|+|+| ++.++++++ .|++|+|||
T Consensus 527 ~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs--~Dg~v~iWd 604 (793)
T PLN00181 527 VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS--DDGSVKLWS 604 (793)
T ss_pred EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc--CCCEEEEEE
Confidence 2211123355789987778999999999999999999999888875 45799999996 666555544 458999999
Q ss_pred cCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEecccCCCceEEEEEcCCCcEEEEEe-CC
Q 011452 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYENQLFLTFR-NR 341 (485)
Q Consensus 264 i~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-~~~~l~gh~~~v~avaFspdg~llaS~s-D~ 341 (485)
+.+|+++.++.++ ..+..+.|.++++..+++++.|++|++||+++++ .+.++.+|...|.++.|+ ++.+|+|++ |+
T Consensus 605 ~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~ 682 (793)
T PLN00181 605 INQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN 682 (793)
T ss_pred CCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC
Confidence 9999999999865 5788999987778889999999999999999876 577888999999999997 778899999 99
Q ss_pred cEEEEeCC-------CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 342 TVAVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 342 TIklWd~~-------G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+|+|||++ ++++.+|++|... ++.++|+|+|++||+|+. |++|+||+..+++.+..+
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~-----i~~v~~s~~~~~lasgs~-----------D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFMGHTNV-----KNFVGLSVSDGYIATGSE-----------TNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEcCCCCC-----eeEEEEcCCCCEEEEEeC-----------CCEEEEEECCCCCceEEE
Confidence 99999985 3688999999877 899999999999999997 799999998877655443
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.-....+... . ..+.....|.+|+|+|+|+.|++|+.||+|+||++
T Consensus 747 ~~~~~~~~~~-------------~------------~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSG-------------L------------EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccc-------------c------------ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 2211000000 0 00011137999999999999999999999999984
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-39 Score=322.29 Aligned_cols=278 Identities=12% Similarity=0.131 Sum_probs=242.0
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
++++|..|.|- --++|++++|+|+|+||..||++..+|.| |.+.|.+|+|..-|++||++|. | -+++
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-Ht~sv~di~~~a~Gk~l~tcSs----D------l~~~ 175 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-HTDSVFDISFDASGKYLATCSS----D------LSAK 175 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-cccceeEEEEecCccEEEecCC----c------cchh
Confidence 78889999888 66778888999999999999999999998 7778999999999999999885 3 1488
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLI 249 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~ 249 (485)
+||... ....-..+..+++ -+-+|.|- |.|.+|+|++.|.|||.|++.+|-|++++.+ .+|..|+.+-||.|++
T Consensus 176 LWd~~~-~~~c~ks~~gh~h--~vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 176 LWDFDT-FFRCIKSLIGHEH--GVSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred heeHHH-HHHHHHHhcCccc--ceeeEEEE-ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE
Confidence 999522 1111111333333 24579997 7999999999999999999999999999975 5899999998888877
Q ss_pred EEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec---------C-----CCEEEEEeCCCcEEEEECCCCeeEEe
Q 011452 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ---------F-----NEKLLVKQENENLQILDVRNFELTEV 315 (485)
Q Consensus 250 sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~---------~-----~~~lls~s~D~tIkIWDv~tg~~~~~ 315 (485)
++ +.|+||++|-+++++|...|++|.+.+..|+|.+. . ++.+.+++.|+|||+||+.+|.|+-+
T Consensus 252 s~--s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 252 SC--SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ec--CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 65 46699999999999999999999999999999641 1 13677789999999999999999999
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
|.||..+|..++|+|.|++|+|+. |+|+++||++ ++|..+++.|... |+++.|..+--+++||+-
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf-----vt~lDfh~~~p~VvTGsV-------- 396 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF-----VTSLDFHKTAPYVVTGSV-------- 396 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce-----eEEEecCCCCceEEeccc--------
Confidence 999999999999999999999999 9999999996 9999999999988 999999999999999997
Q ss_pred cCCCCeEEEEe
Q 011452 394 EGNAGSINISN 404 (485)
Q Consensus 394 ~~~DgtIklWd 404 (485)
|.++|+|.
T Consensus 397 ---dqt~KvwE 404 (406)
T KOG0295|consen 397 ---DQTVKVWE 404 (406)
T ss_pred ---cceeeeee
Confidence 79999996
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-37 Score=329.69 Aligned_cols=291 Identities=17% Similarity=0.245 Sum_probs=248.9
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~ 207 (485)
..++.+.+...|.++.|+|||+.|++++. + +++++|+...++......+ .++...+..++|+ |+|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~----~------~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs-~d~~~ 217 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASS----D------GLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFS-PDGSY 217 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccC----C------CcEEEeecccccchhhccc--cccccceeeeEEC-CCCcE
Confidence 34555555778999999999999988764 3 5899999866662000112 2456667789998 89999
Q ss_pred EEEeeCCCcEEEeec-CCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEE
Q 011452 208 LTYSAQDSIYKVFDL-KNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 208 Las~s~D~tiKlWdl-~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~ 284 (485)
|++++.|++|||||+ ..+.+++++.+| .|.+++|+|.+.++++++ .|.+|||||+++|+++.+|++|.+.+..++
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs--~D~tvriWd~~~~~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS--DDGTVRIWDVRTGECVRKLKGHSDGISGLA 295 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec--CCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence 999999999999999 677899999764 799999999776666654 568999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCe--eEEecccCCCc--eEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFE--LTEVSRTEFMT--PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~--~~~~l~gh~~~--v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
|. +++..|++++.|++|+|||+.+++ |.+.+.++... ++.+.|+|+|++|+++. |+++++||+. ++++.++.+
T Consensus 296 f~-~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 296 FS-PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred EC-CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 96 788899999999999999999999 67888777666 89999999999999999 9999999997 999999999
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
|.... .| +.+..++++|++|+|++. |++|.+||+.++..++.+.+|..
T Consensus 375 ~~~~~-~~-~~~~~~~~~~~~i~sg~~-----------d~~v~~~~~~s~~~~~~l~~h~~------------------- 422 (456)
T KOG0266|consen 375 HSNLV-RC-IFSPTLSTGGKLIYSGSE-----------DGSVYVWDSSSGGILQRLEGHSK------------------- 422 (456)
T ss_pred cCCcc-ee-EecccccCCCCeEEEEeC-----------CceEEEEeCCccchhhhhcCCCC-------------------
Confidence 98751 24 466677999999999997 79999999999999999999931
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEec--CCCcEEEcc
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN--RHGLVHVWS 484 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs--~DgtVklWd 484 (485)
..|..+.++|..+++++++ .|+.|++|.
T Consensus 423 ------------------~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 423 ------------------AAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ------------------CceeccccCCCcCeeeecCcCCCceEEEec
Confidence 1788899999999999999 799999996
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.5e-38 Score=335.12 Aligned_cols=326 Identities=12% Similarity=0.144 Sum_probs=257.3
Q ss_pred ccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 91 FLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 91 ~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
...|..||.-.+|. +-.+|+++-||++++||+..|.++..|.| |.++|.++.|+|+=.+...+| |..| .
T Consensus 101 Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG-~gGvVssl~F~~~~~~~lL~s--g~~D------~ 171 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG-HGGVVSSLLFHPHWNRWLLAS--GATD------G 171 (775)
T ss_pred hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC-CCceEEEEEeCCccchhheee--cCCC------c
Confidence 33467788877777 99999999999999999999999999998 888999999999876633333 4456 7
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcCC---
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISPG--- 244 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-~~V~~VafSpg--- 244 (485)
++++|++.++..- ..++. .|..++.+++|+ +|+..+.|++.|+++-|||+.+++++.+++- ..+.++.+-+.
T Consensus 172 ~v~vwnl~~~~tc--l~~~~-~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~ 247 (775)
T KOG0319|consen 172 TVRVWNLNDKRTC--LHTMI-LHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELG 247 (775)
T ss_pred eEEEEEcccCchH--HHHHH-hhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcC
Confidence 9999999766540 11232 366778899998 7999999999999999999999998888863 45666666543
Q ss_pred --ceEEEEEcCCCCeeEEEEecCCCeEEEE--------------------------------------------------
Q 011452 245 --IMLLIFTKASGHVPLKILSIEDGTVLKS-------------------------------------------------- 272 (485)
Q Consensus 245 --~~ll~sss~~~D~tIklWdi~tG~~L~t-------------------------------------------------- 272 (485)
+.++.++++ ++.+++||.++|+++..
T Consensus 248 ~~~~~~~TaG~--~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE 325 (775)
T KOG0319|consen 248 GKGEYIITAGG--SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE 325 (775)
T ss_pred CcceEEEEecC--CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchh
Confidence 223333332 25777777776665532
Q ss_pred --------------------------------------------------------------------------------
Q 011452 273 -------------------------------------------------------------------------------- 272 (485)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (485)
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence
Q ss_pred -eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---------eEEecccCCCceEEEEEcCCCcEEEEEe-CC
Q 011452 273 -FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE---------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NR 341 (485)
Q Consensus 273 -l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---------~~~~l~gh~~~v~avaFspdg~llaS~s-D~ 341 (485)
.+||.+.+..|+++--....++++|.|.|||+|++...+ +..+.+.|...|++|+.+|+.+++||+| |+
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk 485 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK 485 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc
Confidence 122333333333322112356777888888888887522 2224467999999999999999999999 99
Q ss_pred cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011452 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGL 420 (485)
Q Consensus 342 TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~ 420 (485)
|.|||+++ ++++.+|.||.-- |++|.|+|..|++|++|. |+|||||.|.|..|++||.||+.
T Consensus 486 taKiW~le~~~l~~vLsGH~RG-----vw~V~Fs~~dq~laT~Sg-----------D~TvKIW~is~fSClkT~eGH~~- 548 (775)
T KOG0319|consen 486 TAKIWDLEQLRLLGVLSGHTRG-----VWCVSFSKNDQLLATCSG-----------DKTVKIWSISTFSCLKTFEGHTS- 548 (775)
T ss_pred ceeeecccCceEEEEeeCCccc-----eEEEEeccccceeEeccC-----------CceEEEEEeccceeeeeecCccc-
Confidence 99999996 9999999999976 999999999999999987 79999999999999999999983
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|.-+.|=-+|+.|+|++.||.||||++
T Consensus 549 -------------------------------------aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 549 -------------------------------------AVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred -------------------------------------eeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 7888999999999999999999999984
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.7e-36 Score=320.84 Aligned_cols=360 Identities=13% Similarity=0.179 Sum_probs=299.3
Q ss_pred ccchhHH-HhhhccccccccccCCCCccc-ccccccccc------cceEEEEEe--cCEEEEEeCCCeEEeeecccCcE-
Q 011452 59 TMTDAQE-RFRNIRLQEEYDTHDPKGHCS-MVLPFLRKR------SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQR- 127 (485)
Q Consensus 59 ~~~~~~~-~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~------s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~- 127 (485)
...++|. +|=-+++++..++|..|.... .|+||..+| ..|.+|-++ ..+|+++|.|-++|||.++..+-
T Consensus 101 ~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~ 180 (893)
T KOG0291|consen 101 AIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL 180 (893)
T ss_pred eEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc
Confidence 3445554 455678888889999888877 889987665 469999999 89999999999999999886555
Q ss_pred -EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec--cCCcCc--------------------cc
Q 011452 128 -ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR--RGKPDA--------------------GF 184 (485)
Q Consensus 128 -l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~--~G~~~~--------------------~~ 184 (485)
.+.+++ |.+.|-.-||..|...|.++|.|| .+-+|... -++++. ..
T Consensus 181 ~~~~l~g-Hkd~VvacfF~~~~~~l~tvskdG----------~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~ 249 (893)
T KOG0291|consen 181 FTYALNG-HKDYVVACFFGANSLDLYTVSKDG----------ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTH 249 (893)
T ss_pred ceEeccC-CCcceEEEEeccCcceEEEEecCc----------eEEEEEecCCCcccccccccccccccccccccchhhhc
Confidence 666777 888999999999999999999654 66677652 111111 00
Q ss_pred ce-eee-------ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCceEEEEEcC
Q 011452 185 AL-FES-------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKA 253 (485)
Q Consensus 185 ~l-f~~-------~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafS-pg~~ll~sss~ 253 (485)
+. |.. +...-+.+.+|. +.-.+||.|=..|...|+.+...++++.++ ++.|..++|+ .|..+|..++.
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK 328 (893)
T ss_pred ceEEEEEEeeeecccccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc
Confidence 11 110 111234467896 678899999889999999999999999886 6899999999 58888887654
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc
Q 011452 254 SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ 333 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ 333 (485)
-+.+-+|+.++-.-+....+|...+.+++++ |||+.+++|++|+.|||||.++|-|+.++..|+..|.+|.|+..|+
T Consensus 329 --lgQLlVweWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 329 --LGQLLVWEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN 405 (893)
T ss_pred --cceEEEEEeeccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC
Confidence 3689999998866667777999999999997 7899999999999999999999999999999999999999999999
Q ss_pred EEEEEe-CCcEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 334 LFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 334 llaS~s-D~TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
.++|+| ||||+.||+ ++..-+||+.-..-+ ...|+..|.|.++..|+.| -=-|.||+++|||++
T Consensus 406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q----fscvavD~sGelV~AG~~d----------~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ----FSCVAVDPSGELVCAGAQD----------SFEIFVWSVQTGQLL 471 (893)
T ss_pred EEEEeecCCeEEeeeecccceeeeecCCCcee----eeEEEEcCCCCEEEeeccc----------eEEEEEEEeecCeee
Confidence 999999 999999999 599999998765432 6788999999999988862 346999999999999
Q ss_pred EEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 412 AKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 412 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
-.|.||++ +|.+|+|+|+|+.|||||+|+|||+||+
T Consensus 472 DiLsGHEg--------------------------------------PVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 472 DILSGHEG--------------------------------------PVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred ehhcCCCC--------------------------------------cceeeEEccccCeEEeccccceEEEEEe
Confidence 99999984 9999999999999999999999999984
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.9e-37 Score=327.65 Aligned_cols=320 Identities=16% Similarity=0.182 Sum_probs=259.9
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeC-----CCEEEEEEeecCCCCcccc
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN-----NDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spd-----g~~Las~S~d~~~d~stL~ 166 (485)
|.|.|.++.|+ +..+++++.|.+|-+||..+-++++++.- .+.+-++.+=++ |++++|++..
T Consensus 191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~--ye~~E~vv~l~~~~~~~~~~~~TaG~~--------- 259 (775)
T KOG0319|consen 191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL--YESLESVVRLREELGGKGEYIITAGGS--------- 259 (775)
T ss_pred hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech--hhheeeEEEechhcCCcceEEEEecCC---------
Confidence 56789999999 99999999999999999999999999876 446999999998 8899997743
Q ss_pred eeEEEEeEeccCCcC-----------------------------ccccee------------------------------
Q 011452 167 CRSTRIEYIRRGKPD-----------------------------AGFALF------------------------------ 187 (485)
Q Consensus 167 ~~t~~lw~i~~G~~~-----------------------------~~~~lf------------------------------ 187 (485)
..+++|+...|++. +...+.
T Consensus 260 -g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~ 338 (775)
T KOG0319|consen 260 -GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH 338 (775)
T ss_pred -ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence 37778877655541 000011
Q ss_pred -------------ee---------ccccCceEEE-EeCCCCeEEEEeeCCCcEEEeecCCCeEE------EEEcCCcEEE
Q 011452 188 -------------ES---------ESLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNYTML------YSISDKNVQE 238 (485)
Q Consensus 188 -------------~~---------~~~~~~~~V~-Fs~pnG~~Las~s~D~tiKlWdl~~g~~l------~tl~~~~V~~ 238 (485)
+. +|..-+.++. |+ .|-+|||||.|++++||.++++.+. .+.|.+.|-+
T Consensus 339 laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~--~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 339 LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS--SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred EEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc--cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 00 0111122333 43 6889999999999999999554432 3345678999
Q ss_pred EEEcC-CceEEEEEcCCCCeeEEEEecCCCeE-----EE----EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011452 239 IKISP-GIMLLIFTKASGHVPLKILSIEDGTV-----LK----SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308 (485)
Q Consensus 239 VafSp-g~~ll~sss~~~D~tIklWdi~tG~~-----L~----tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~ 308 (485)
|++|- +-..+++. +.|.|||+|++..-+. .. +-..|...+++|+.+ |.+..++++|.|+|.|||++.
T Consensus 417 va~~~~~asffvsv--S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 417 VAGSKLGASFFVSV--SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred eeecccCccEEEEe--cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec-CCCceEEecccccceeeeccc
Confidence 99994 55555554 4569999999865221 12 223567778899986 545555667899999999999
Q ss_pred CCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 309 tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
..++..+|.||.-.||+|.|+|..|++||+| |.|||||.++ ..|++||+||... |.-+.|-.+|+.|+|++.
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a-----Vlra~F~~~~~qliS~~a- 567 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA-----VLRASFIRNGKQLISAGA- 567 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce-----eEeeeeeeCCcEEEeccC-
Confidence 9999999999999999999999999999999 9999999996 9999999999976 999999999999999986
Q ss_pred CCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC
Q 011452 387 DSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE 466 (485)
Q Consensus 387 ~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp 466 (485)
||-|||||+.|++|+.+|-+|+| .||+|+-+|
T Consensus 568 ----------dGliKlWnikt~eC~~tlD~H~D--------------------------------------rvWaL~~~~ 599 (775)
T KOG0319|consen 568 ----------DGLIKLWNIKTNECEMTLDAHND--------------------------------------RVWALSVSP 599 (775)
T ss_pred ----------CCcEEEEeccchhhhhhhhhccc--------------------------------------eeEEEeecC
Confidence 89999999999999999999985 899999999
Q ss_pred CCCEEEEecCCCcEEEcc
Q 011452 467 DRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 467 Dg~~LaSgs~DgtVklWd 484 (485)
++.+++||+.||.|-+|.
T Consensus 600 ~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 600 LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccceeEecCCCeEEEEee
Confidence 999999999999999994
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.5e-35 Score=270.39 Aligned_cols=276 Identities=17% Similarity=0.236 Sum_probs=237.2
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|.++|..+.++ +++|++++.||.+++|+..+++.+..+.. |...+.++.|+|+++.|++++. + +.+.
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----~------~~i~ 76 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGSS----D------KTIR 76 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEEEEcC----C------CeEE
Confidence 45566666666 79999999999999999999988887776 7778999999999999998764 3 5999
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLI 249 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~ 249 (485)
+|++..++... .+. .+...+..+.|+ ++++++++++.|+.+++||+.+++++..+.. ..|.+++|+|++.+++
T Consensus 77 i~~~~~~~~~~---~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 77 LWDLETGECVR---TLT-GHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred EEEcCcccceE---EEe-ccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEE
Confidence 99998765521 222 233356689997 6789999998899999999999998888864 4699999999766666
Q ss_pred EEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEc
Q 011452 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 250 sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs 329 (485)
++. .|+.|++||+.+++++..+..|...+..++|. +++..+++++.|+.|++||+++++++..+..|...+.+++|+
T Consensus 152 ~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 152 SSS--QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EEc--CCCcEEEEEccccccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 644 35899999999999999999888889999997 667788888889999999999999999998999999999999
Q ss_pred CCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 330 YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 330 pdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
|++.++++++ |++|++||+. ++++..+.+|... +.+++|+|+|++|++++. |++|++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~-----------d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS-----VTSLAWSPDGKRLASGSA-----------DGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCc-----EEEEEECCCCCEEEEecC-----------CCeEEecC
Confidence 9999999999 9999999996 9999999988866 999999999999999986 79999996
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-35 Score=292.26 Aligned_cols=281 Identities=10% Similarity=0.115 Sum_probs=236.7
Q ss_pred cccceEEEEEe---cCEEEEEeCCCeEEeeecc-----cCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccc
Q 011452 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRE-----TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSL 165 (485)
Q Consensus 94 ~~s~V~~i~~s---~~~ias~s~dgtiklW~~~-----tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL 165 (485)
|...|.+++.. -|+|.+++.|.++-+|++. .|...+-+.| |...|..++.+|||++..++|. |
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~sw----D---- 84 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSASW----D---- 84 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEeccc----c----
Confidence 44566666666 7999999999999999865 4778888888 9999999999999999999885 4
Q ss_pred ceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEE
Q 011452 166 RCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKI 241 (485)
Q Consensus 166 ~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~Vaf 241 (485)
+++++||+..|+. ...|.. |..-+-+|+|+ +|...|+|||.|+||||||.. |.|.|++.. ++|.+|.|
T Consensus 85 --~~lrlWDl~~g~~---t~~f~G-H~~dVlsva~s-~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 85 --GTLRLWDLATGES---TRRFVG-HTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred --ceEEEEEecCCcE---EEEEEe-cCCceEEEEec-CCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEE
Confidence 5999999999976 345653 66778899998 788899999999999999975 578888863 58999999
Q ss_pred cCC--ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccC
Q 011452 242 SPG--IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE 319 (485)
Q Consensus 242 Spg--~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh 319 (485)
||. .-+++++ +.|+|||+||+.+-++..+|.||++.+..|+++ |||..+++|+.|+.+-|||++.+++++.+ +|
T Consensus 157 sP~~~~p~Ivs~--s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl-~a 232 (315)
T KOG0279|consen 157 SPNESNPIIVSA--SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSL-EA 232 (315)
T ss_pred cCCCCCcEEEEc--cCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEec-cC
Confidence 995 5666654 456999999999999999999999999999997 88999999999999999999999999998 68
Q ss_pred CCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEee----cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 320 FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~----gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
+..|.+++|+|+--.|+.+-+..|||||++ +.++.+|. |......+....++|||+||+.|.+|-.
T Consensus 233 ~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t--------- 303 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT--------- 303 (315)
T ss_pred CCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec---------
Confidence 899999999999888877778889999997 87877664 2211111222469999999999999976
Q ss_pred CCCCeEEEEeCC
Q 011452 395 GNAGSINISNIL 406 (485)
Q Consensus 395 ~~DgtIklWdl~ 406 (485)
|+.|++|.+.
T Consensus 304 --d~~irv~qv~ 313 (315)
T KOG0279|consen 304 --DNVIRVWQVA 313 (315)
T ss_pred --CCcEEEEEee
Confidence 7999999874
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-37 Score=331.05 Aligned_cols=275 Identities=14% Similarity=0.170 Sum_probs=233.6
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
|+-|+.. ....+.+..||+|+.+||.+= .| -.|++|.+..-++. +|-... . ..
T Consensus 370 c~YT~~n-t~~~v~ca~fSddssmlA~Gf----~d------S~i~~~Sl~p~kl~---~lk~~~------~-------l~ 422 (707)
T KOG0263|consen 370 CMYTFHN-TYQGVTCAEFSDDSSMLACGF----VD------SSVRVWSLTPKKLK---KLKDAS------D-------LS 422 (707)
T ss_pred EEEEEEE-cCCcceeEeecCCcchhhccc----cc------cEEEEEecchhhhc---cccchh------h-------hc
Confidence 3445544 345799999999999887733 33 48889997544441 111111 1 11
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEE
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~ 284 (485)
.+-..+.|-.+..-|........++ |..+|.++.|||+..+|.++|. |.|+|||++.|-.++-.++||..+||.|.
T Consensus 423 ~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSE--D~svRLWsl~t~s~~V~y~GH~~PVwdV~ 500 (707)
T KOG0263|consen 423 NIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSE--DSSVRLWSLDTWSCLVIYKGHLAPVWDVQ 500 (707)
T ss_pred cccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccC--CcceeeeecccceeEEEecCCCcceeeEE
Confidence 2233455666777777766666666 4569999999999888888765 58999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 362 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~ 362 (485)
|+ |.|-++|++|.|+|.+||...+-..++++.||...|.++.|.|+..++|||| |+||++||+. |..++.|.||...
T Consensus 501 F~-P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 501 FA-PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP 579 (707)
T ss_pred ec-CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence 97 7899999999999999999999999999999999999999999999999999 9999999995 9999999999988
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
|.+|+|||+|.+||||+. ||.|+|||+.+|+.+..+.+|++
T Consensus 580 -----V~al~~Sp~Gr~LaSg~e-----------d~~I~iWDl~~~~~v~~l~~Ht~----------------------- 620 (707)
T KOG0263|consen 580 -----VTALAFSPCGRYLASGDE-----------DGLIKIWDLANGSLVKQLKGHTG----------------------- 620 (707)
T ss_pred -----eEEEEEcCCCceEeeccc-----------CCcEEEEEcCCCcchhhhhcccC-----------------------
Confidence 999999999999999987 79999999999999999999984
Q ss_pred ccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++|.||.||..||+|+.|.+|+|||.
T Consensus 621 ---------------ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 621 ---------------TIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ---------------ceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 8999999999999999999999999984
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.3e-36 Score=319.17 Aligned_cols=238 Identities=19% Similarity=0.326 Sum_probs=211.8
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEec-CCCeE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSI-EDGTV 269 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi-~tG~~ 269 (485)
+-.+.|+ +||+.|++++.|+++++|++.+++ ++.++. ...|.+++|||++.++++++ .|++|||||+ +.|.+
T Consensus 162 v~~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s--~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 162 VTCVDFS-PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS--DDKTLRIWDLKDDGRN 238 (456)
T ss_pred eEEEEEc-CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEec--CCceEEEeeccCCCeE
Confidence 4468998 799999999999999999998888 777774 45899999999887777654 4599999999 77799
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~ 348 (485)
+++|++|...+.+++|+ |++..+++++.|+||||||+++++|++.+.+|.+.|++++|++||++|++++ |++|+|||+
T Consensus 239 ~~~l~gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred EEEecCCCCceEEEEec-CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 99999999999999998 5568888899999999999999999999999999999999999999999999 999999999
Q ss_pred C-Cc--EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 349 R-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 349 ~-G~--ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
. |+ ++.++.++.... .++.+.|+|+|++|++++. |+++++||+..++++.++.+|.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~---~~~~~~fsp~~~~ll~~~~-----------d~~~~~w~l~~~~~~~~~~~~~~~----- 378 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSA---PVTSVQFSPNGKYLLSASL-----------DRTLKLWDLRSGKSVGTYTGHSNL----- 378 (456)
T ss_pred CCCceeeeecccCCCCCC---ceeEEEECCCCcEEEEecC-----------CCeEEEEEccCCcceeeecccCCc-----
Confidence 6 87 678998887542 2899999999999999987 799999999999999999999730
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. ..+.+..++++|+.|+||+.|+.|++|+.
T Consensus 379 ---------~---------------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 379 ---------V---------------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred ---------c---------------------eeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 0 14566777999999999999999999984
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=288.77 Aligned_cols=279 Identities=13% Similarity=0.182 Sum_probs=236.6
Q ss_pred CEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc
Q 011452 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (485)
Q Consensus 106 ~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~ 185 (485)
=+||++++|.|||+|...||.|.+|++- ++..|+.+...||+..||.+.. ..|||+|+.+++++. ..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh-~dsqVNrLeiTpdk~~LAaa~~-----------qhvRlyD~~S~np~P-v~ 77 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH-PDSQVNRLEITPDKKDLAAAGN-----------QHVRLYDLNSNNPNP-VA 77 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec-CccceeeEEEcCCcchhhhccC-----------CeeEEEEccCCCCCc-ee
Confidence 4799999999999999999999999975 8889999999999999998652 589999999998852 23
Q ss_pred eeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEec
Q 011452 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 186 lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi 264 (485)
.|+. +.+-+..|.|- .+|+.+.+||.|||+||||+..-.+...+. ...|++|.++|.+.-|+++ +.++-|++||+
T Consensus 78 t~e~-h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~--dqsg~irvWDl 153 (311)
T KOG0315|consen 78 TFEG-HTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISG--DQSGNIRVWDL 153 (311)
T ss_pred EEec-cCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEee--cCCCcEEEEEc
Confidence 4553 55778899996 799999999999999999999977766664 4689999999977766664 45589999999
Q ss_pred CCCeEEEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe------eEEecccCCCceEEEEEcCCCcEEEE
Q 011452 265 EDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE------LTEVSRTEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 265 ~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~------~~~~l~gh~~~v~avaFspdg~llaS 337 (485)
.+-.|-..+- .-.-.+.+++. .|||.+|++.-.-|+.-+|++-++. +++-++.|+..+....||||+++||+
T Consensus 154 ~~~~c~~~liPe~~~~i~sl~v-~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 154 GENSCTHELIPEDDTSIQSLTV-MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cCCccccccCCCCCcceeeEEE-cCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 8765554442 22234556665 3788888888899999999998753 45557889999999999999999999
Q ss_pred Ee-CCcEEEEeCCC--cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 338 FR-NRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 338 ~s-D~TIklWd~~G--~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+| |.|+|||+.++ ++-..+++|+.| |+..+||.||+||++|+. |+++||||+.+||.++..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rW-----vWdc~FS~dg~YlvTass-----------d~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRW-----VWDCAFSADGEYLVTASS-----------DHTARLWDLSAGKEVRQY 296 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCce-----EEeeeeccCccEEEecCC-----------CCceeecccccCceeeec
Confidence 99 99999999975 466789999999 999999999999999986 799999999999999999
Q ss_pred cCCC
Q 011452 415 RASN 418 (485)
Q Consensus 415 ~gH~ 418 (485)
.||.
T Consensus 297 ~gh~ 300 (311)
T KOG0315|consen 297 QGHH 300 (311)
T ss_pred CCcc
Confidence 9996
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=310.34 Aligned_cols=336 Identities=14% Similarity=0.152 Sum_probs=271.2
Q ss_pred cceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 96 s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
++|.+..|- -..||++-.+|...|+.+..=.+|+.|.- .+..|..++||.-|+.||.++. +.+++-+|
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~---------klgQLlVw 335 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCS---------KLGQLLVW 335 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec-ccceeeEEEecccCCEEEEcCC---------ccceEEEE
Confidence 778888888 78899999999999999998888998887 4568999999999999998763 23588899
Q ss_pred EeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEE
Q 011452 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIF 250 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~s 250 (485)
+.+.... .+-+++|...+.+++++ |||+++|+|+.|+.|||||...|-|+.|+.. ..|..|.|+. |..++++
T Consensus 336 eWqsEsY----VlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 336 EWQSESY----VLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred Eeeccce----eeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 9866654 22333566777789998 8999999999999999999999999999964 5899999995 6666554
Q ss_pred EcCCCCeeEEEEecCCCeEEEEeecCCccee-EEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNK-KVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 251 ss~~~D~tIklWdi~tG~~L~tl~~~~~~~~-~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
+.|+|||.||+..+.+-+||........ +|+- .|.|+.+.+|+ +--.|.+|+++||+++.+|.||.++|..++|
T Consensus 411 ---SLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav-D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 411 ---SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV-DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred ---ecCCeEEeeeecccceeeeecCCCceeeeEEEE-cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 4679999999999999999986433333 4443 36688877775 6689999999999999999999999999999
Q ss_pred cCCCcEEEEEe-CCcEEEEeC-C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 329 LYENQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+|+|++|||+| |+|||+||+ . ...+.+|+--. - |.+++|+|||+-||.+.- ||.|.+||+
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s-d-----vl~vsfrPdG~elaVaTl-----------dgqItf~d~ 549 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS-D-----VLAVSFRPDGKELAVATL-----------DGQITFFDI 549 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEeecc-c-----eeEEEEcCCCCeEEEEEe-----------cceEEEEEh
Confidence 99999999999 999999998 3 44677776332 2 899999999999999997 799999999
Q ss_pred CCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 406 LTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 406 ~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.+..+.+|.|-.+. .+.|.+.-..++=+..+. ...+++.||+||+.|.+|+..+.|.|++.
T Consensus 550 ~~~~q~~~IdgrkD~----~~gR~~~D~~ta~~sa~~--------------K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 550 KEAVQVGSIDGRKDL----SGGRKETDRITAENSAKG--------------KTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred hhceeeccccchhhc----cccccccceeehhhcccC--------------CceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 999999889885531 111111111111111111 37899999999999999999999999873
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.5e-34 Score=296.15 Aligned_cols=317 Identities=13% Similarity=0.127 Sum_probs=261.5
Q ss_pred ccccceEEEEEe--cC-EEEEEeCCCeEEeeecccCcEEEEe-------------ecCCcccEEEEEEeeCCCEEEEEEe
Q 011452 93 RKRSKIIEIVAA--RD-IVFALAQSGVCAAFCRETNQRICFL-------------NVTADEVIRSLFYNKNNDSLITVSV 156 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~-~ias~s~dgtiklW~~~tG~~l~tl-------------~g~~~~~i~sv~~spdg~~Las~S~ 156 (485)
+|.++|..-+.. .+ ++|+++.|-+.|+|++....-+++. ....+.-|.+|+||-+|..||+++.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 355555555554 45 9999999999999998741111110 1112346999999999999999774
Q ss_pred ecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE--EEcCC
Q 011452 157 YASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SISDK 234 (485)
Q Consensus 157 d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~--tl~~~ 234 (485)
| +.++||+. .|.+. ..|.. |.+.+.++.++ -.|.+|+|++-|+|+-|||..+|+... +++..
T Consensus 256 ----~------G~~riw~~-~G~l~---~tl~~-HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 256 ----D------GEARIWNK-DGNLI---STLGQ-HKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred ----C------cEEEEEec-Cchhh---hhhhc-cCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 4 59999994 67662 23333 56778889997 699999999999999999999998654 45544
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE 314 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~ 314 (485)
.-.+|.+-.+...+++ +.|+.|.|.-+..-.+.+||.||.+.|..+.|. |.+..|+++|+|+|+|||+...+.+.+
T Consensus 320 ~~lDVdW~~~~~F~ts---~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 320 PALDVDWQSNDEFATS---STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred CccceEEecCceEeec---CCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCceEEEecCCCeeEeeecCCCcchh
Confidence 4356666666677665 345789999987778999999999999999996 567788888999999999999999999
Q ss_pred ecccCCCceEEEEEcCCC---------cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 315 VSRTEFMTPSAFIFLYEN---------QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 315 ~l~gh~~~v~avaFspdg---------~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
.|.+|...|+.+.+||+| ..+|+++ |.||++||+. |.++.+|.+|+.. |.+|+|||||+|||||
T Consensus 396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-----VysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-----VYSVAFSPNGRYLASG 470 (524)
T ss_pred hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-----eEEEEecCCCcEEEec
Confidence 999999999999999965 4788888 9999999995 9999999999988 9999999999999999
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE
Q 011452 384 CKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF 463 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~ 463 (485)
+. ||-|.||++++|+.++.+.+.. .|..|.
T Consensus 471 s~-----------dg~V~iws~~~~~l~~s~~~~~---------------------------------------~Ifel~ 500 (524)
T KOG0273|consen 471 SL-----------DGCVHIWSTKTGKLVKSYQGTG---------------------------------------GIFELC 500 (524)
T ss_pred CC-----------CCeeEeccccchheeEeecCCC---------------------------------------eEEEEE
Confidence 98 7999999999999999998743 789999
Q ss_pred EcCCCCEEEEecCCCcEEEcc
Q 011452 464 YDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 464 fspDg~~LaSgs~DgtVklWd 484 (485)
|+.+|..|.-+-.|+.|.|=|
T Consensus 501 Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 501 WNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EcCCCCEEEEEecCCCceEEE
Confidence 999999999888999998755
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.3e-34 Score=280.70 Aligned_cols=291 Identities=12% Similarity=0.156 Sum_probs=242.9
Q ss_pred hccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCC
Q 011452 69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN 148 (485)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg 148 (485)
+|+....++.|..|++++...|+ +..|+|+|+||.+-+||.-|.+..+.+.- +..||...||+|.|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~D-------------sr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg 109 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTD-------------SRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSG 109 (343)
T ss_pred eeeeEEEecccccceeeeEecCC-------------cCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCC
Confidence 45555777788887777777777 89999999999999999999988888876 77899999999999
Q ss_pred CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee--ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe
Q 011452 149 DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT 226 (485)
Q Consensus 149 ~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~--~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~ 226 (485)
+.+|.++. |+ .-.|+++...+-+...+.-.. +|.+++....|- +|+++| ++|.|.|+-+||+++|+
T Consensus 110 ~~VAcGGL---dN-------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~-dD~~il-T~SGD~TCalWDie~g~ 177 (343)
T KOG0286|consen 110 NFVACGGL---DN-------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL-DDNHIL-TGSGDMTCALWDIETGQ 177 (343)
T ss_pred CeEEecCc---Cc-------eeEEEecccccccccceeeeeecCccceeEEEEEc-CCCceE-ecCCCceEEEEEcccce
Confidence 99998664 33 455666643322111111111 345666678895 577665 56779999999999999
Q ss_pred EEEEEcCC--cEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEE
Q 011452 227 MLYSISDK--NVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ 303 (485)
Q Consensus 227 ~l~tl~~~--~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIk 303 (485)
.+..+++| .|.+++++| ++...++++ -|.+.||||+..|.+.++|.||..-|.+|.|. |+|.-+++|++|+|+|
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCR 254 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCeEEecc--cccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeE
Confidence 99999875 799999999 766666654 45899999999999999999999999999997 7899999999999999
Q ss_pred EEECCCCeeEEecccC--CCceEEEEEcCCCcEEEEEe-CCcEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCE
Q 011452 304 ILDVRNFELTEVSRTE--FMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (485)
Q Consensus 304 IWDv~tg~~~~~l~gh--~~~v~avaFspdg~llaS~s-D~TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~ 379 (485)
++|++..+.+.++... ...|++|+||--|++|..+. |.++-+||. .|+.+..|.||.+. |..|..||||--
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR-----vScl~~s~DG~a 329 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR-----VSCLGVSPDGMA 329 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe-----eEEEEECCCCcE
Confidence 9999999888887543 34899999999999999998 999999998 69999999999988 999999999999
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 380 IISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
+++||. |.++|||.
T Consensus 330 v~TgSW-----------Ds~lriW~ 343 (343)
T KOG0286|consen 330 VATGSW-----------DSTLRIWA 343 (343)
T ss_pred EEecch-----------hHheeecC
Confidence 999998 79999994
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=292.12 Aligned_cols=298 Identities=14% Similarity=0.184 Sum_probs=250.4
Q ss_pred eecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEE
Q 011452 120 FCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVE 199 (485)
Q Consensus 120 W~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~ 199 (485)
|... -++.+.++| |.++|+||++.|-++.++|+|+ | ++++|||+.+|++.. --.++..-+..|+
T Consensus 137 WHap-wKl~rVi~g-HlgWVr~vavdP~n~wf~tgs~----D------rtikIwDlatg~Lkl----tltGhi~~vr~va 200 (460)
T KOG0285|consen 137 WHAP-WKLYRVISG-HLGWVRSVAVDPGNEWFATGSA----D------RTIKIWDLATGQLKL----TLTGHIETVRGVA 200 (460)
T ss_pred ccCc-ceehhhhhh-ccceEEEEeeCCCceeEEecCC----C------ceeEEEEcccCeEEE----eecchhheeeeee
Confidence 5543 566777887 9999999999999999999774 5 799999999999832 1124555566899
Q ss_pred EeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 200 Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
|| +--.+|-|++.|++||-|||+..+.+...++| .|.+++..|-..++.+++ .|.++||||+.|...+.+|.||.
T Consensus 201 vS-~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g--rDst~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 201 VS-KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG--RDSTIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred ec-ccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecC--CcceEEEeeecccceEEEecCCC
Confidence 98 67899999999999999999988888887775 899999999555555543 45899999999999999999999
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeC-CCcEEEEe
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSF 356 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~-~G~ll~tl 356 (485)
..|.+|.|- |.+.+++++|.|.|||+||++.|+...++..|...|.+++..|.-.+|||++-..||-|++ +|+.++.|
T Consensus 278 ~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 278 NPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNL 356 (460)
T ss_pred CcceeEEee-cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcc
Confidence 999999996 5677999999999999999999999999999999999999999999999999556999999 59999999
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
.+|..- ++.++...|| ++++|++ .|+|-.||.++|-+-+.++.--. +.|
T Consensus 357 sgh~~i-----intl~~nsD~-v~~~G~d-----------ng~~~fwdwksg~nyQ~~~t~vq-------pGS------- 405 (460)
T KOG0285|consen 357 SGHNAI-----INTLSVNSDG-VLVSGGD-----------NGSIMFWDWKSGHNYQRGQTIVQ-------PGS------- 405 (460)
T ss_pred ccccce-----eeeeeeccCc-eEEEcCC-----------ceEEEEEecCcCccccccccccc-------CCc-------
Confidence 999876 9999999997 5666764 69999999999876665532110 000
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
...| ..|++-+|+..|..|+||..|++||+|.
T Consensus 406 --------------l~sE--agI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 406 --------------LESE--AGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred --------------cccc--cceeEEeecccCceEEeccCCcceEEEe
Confidence 0011 3899999999999999999999999994
No 24
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.6e-33 Score=312.48 Aligned_cols=278 Identities=11% Similarity=0.117 Sum_probs=226.4
Q ss_pred cccccceEEEEEe--cCEEEEEeCCCeEEeeeccc----Cc----EEEEeecCCcccEEEEEEeeC-CCEEEEEEeecCC
Q 011452 92 LRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRET----NQ----RICFLNVTADEVIRSLFYNKN-NDSLITVSVYASD 160 (485)
Q Consensus 92 ~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~t----G~----~l~tl~g~~~~~i~sv~~spd-g~~Las~S~d~~~ 160 (485)
+.+.+.|.+|.|+ +++||+++.|++|++|+..+ +. .+..+. +...|.+++|+|. +..||+++.
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~---- 553 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNF---- 553 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeC----
Confidence 3478889999999 99999999999999999753 21 223333 3457999999875 778888663
Q ss_pred CCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-CcEEEE
Q 011452 161 NFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEI 239 (485)
Q Consensus 161 d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-~~V~~V 239 (485)
| ++++|||+.+++.. ..+. +|...+..|+|++++|.+|++|+.|++|+|||+.+++++.++.. ..|.++
T Consensus 554 D------g~v~lWd~~~~~~~---~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v 623 (793)
T PLN00181 554 E------GVVQVWDVARSQLV---TEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV 623 (793)
T ss_pred C------CeEEEEECCCCeEE---EEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE
Confidence 4 59999999888762 2232 35566789999866899999999999999999999999888864 579999
Q ss_pred EEc-CCceEEEEEcCCCCeeEEEEecCCCe-EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC------Ce
Q 011452 240 KIS-PGIMLLIFTKASGHVPLKILSIEDGT-VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN------FE 311 (485)
Q Consensus 240 afS-pg~~ll~sss~~~D~tIklWdi~tG~-~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t------g~ 311 (485)
+|+ +++.++++++ .|++|++||+.+++ .+.++.+|...+..|.|. ++..|++++.|++|+|||+.. ..
T Consensus 624 ~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~ 699 (793)
T PLN00181 624 QFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINET 699 (793)
T ss_pred EEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCc
Confidence 996 5555555544 45899999998876 578899999999999995 478899999999999999985 36
Q ss_pred eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe-------------ecCCCCCCCCCeeEEEECCC
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF-------------EDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl-------------~gH~~~~~~~~v~svafSpD 376 (485)
++..+.+|...++.++|+|++++||+++ |++|+||+.. +..+.++ .+|..+ |++++|+|+
T Consensus 700 ~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-----V~~v~ws~~ 774 (793)
T PLN00181 700 PLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF-----ISSVCWRGQ 774 (793)
T ss_pred ceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE-----EEEEEEcCC
Confidence 7888999999999999999999999999 9999999985 5444332 223323 899999999
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
|++|++|+. ||+|+||++
T Consensus 775 ~~~lva~~~-----------dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANS-----------TGNIKILEM 792 (793)
T ss_pred CCeEEEecC-----------CCcEEEEec
Confidence 999999986 799999996
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.3e-34 Score=309.89 Aligned_cols=330 Identities=12% Similarity=0.105 Sum_probs=247.7
Q ss_pred cccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCc
Q 011452 86 SMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFS 163 (485)
Q Consensus 86 ~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~s 163 (485)
..+-.+.+....|.+..|+ +.+||.|-.|..|++|.+. .+.|+.|....+ . . .+=+.|+|-
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~-p~kl~~lk~~~~-l-~---------~~d~~sad~----- 431 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLT-PKKLKKLKDASD-L-S---------NIDTESADV----- 431 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecc-hhhhccccchhh-h-c---------cccccccch-----
Confidence 3334666778889999999 7899999999999999977 556666665222 1 1 111112111
Q ss_pred ccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEE
Q 011452 164 SLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKI 241 (485)
Q Consensus 164 tL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~Vaf 241 (485)
...+.|-..+-. ...|. +|.+.+..+.|+ |+.++|+|||.|+|||||.+.+-.++-...+ .+||.|.|
T Consensus 432 -----~~~~~D~~~~~~--~~~L~--GH~GPVyg~sFs-Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F 501 (707)
T KOG0263|consen 432 -----DVDMLDDDSSGT--SRTLY--GHSGPVYGCSFS-PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQF 501 (707)
T ss_pred -----hhhhccccCCce--eEEee--cCCCceeeeeec-ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEe
Confidence 011112111110 01133 345677789998 7999999999999999999999988765554 58999999
Q ss_pred cCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCC
Q 011452 242 SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM 321 (485)
Q Consensus 242 Spg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~ 321 (485)
+|-|...+++ +.|+|.+||+...-+.|+.|.||+.-+..|.|. |...++++||.|+|||+||+.+|..++.+.||..
T Consensus 502 ~P~GyYFata--s~D~tArLWs~d~~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 502 APRGYYFATA--SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred cCCceEEEec--CCCceeeeeecccCCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 9966665554 456999999999999999999999999999998 5567888899999999999999999999999999
Q ss_pred ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 322 TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
+|.+++|||+|++||||+ |+.|+|||+. |+++..|.+|.+- |.+|.||.||..||||+. |++
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-----i~SlsFS~dg~vLasgg~-----------Dns 642 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-----IYSLSFSRDGNVLASGGA-----------DNS 642 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc-----eeEEEEecCCCEEEecCC-----------CCe
Confidence 999999999999999999 9999999996 9999999999766 999999999999999987 799
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEec
Q 011452 400 INISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN 475 (485)
Q Consensus 400 IklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs 475 (485)
|+|||+..-.+.- ..+|-. ...-+.+.++.....+...+-+|.. .|..|-|.--.-.|+.|.
T Consensus 643 V~lWD~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~llgs~~tK~t-----------pv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 643 VRLWDLTKVIELL-NLGHIS--TSNSAITQENNASSLLLGSFYTKNT-----------PVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred EEEEEchhhcccc-cccccc--cccccccccCCCCcceeeeeeecCc-----------eEEEEEEeccceeEEecc
Confidence 9999997644441 113321 1112233333333334434433333 888999987666666654
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=298.83 Aligned_cols=225 Identities=16% Similarity=0.284 Sum_probs=184.2
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
|.+.+-.+.|+ .++|+|||.|.||+|||++||+++.++- .+.|..+.|+.|.|+ ++ +.|.+|.+||+..-.
T Consensus 236 HtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mv--tc--SkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 236 HTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMV--TC--SKDRSIAVWDMASPT 308 (499)
T ss_pred CCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEE--Ee--cCCceeEEEeccCch
Confidence 34444456664 4688999999999999999999888873 468889999877653 32 345899999876543
Q ss_pred ---EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEE
Q 011452 269 ---VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 269 ---~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIk 344 (485)
+.+.|.||...|..|+|. +.+++++|.|.|||+|++.|+++++++.||.-.|-++ -+.|++++||| |.||+
T Consensus 309 ~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 309 DITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIR 383 (499)
T ss_pred HHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceeh--hccCeEEEecCCCceEE
Confidence 335677999999999985 4577778999999999999999999999999777554 78999999999 99999
Q ss_pred EEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe---------EEEEe
Q 011452 345 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK---------CLAKI 414 (485)
Q Consensus 345 lWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk---------~l~tl 414 (485)
|||.+ |.|++.|+||..- |+.|.| |.+.|+||.. ||+||+||+.++. |+.++
T Consensus 384 lwdi~~G~cLRvLeGHEeL-----vRciRF--d~krIVSGaY-----------DGkikvWdl~aaldpra~~~~~Cl~~l 445 (499)
T KOG0281|consen 384 LWDIECGACLRVLEGHEEL-----VRCIRF--DNKRIVSGAY-----------DGKIKVWDLQAALDPRAPASTLCLRTL 445 (499)
T ss_pred EEeccccHHHHHHhchHHh-----hhheee--cCceeeeccc-----------cceEEEEecccccCCcccccchHHHhh
Confidence 99997 9999999999987 899998 6789999987 7999999998764 33344
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|+ +.|..|.|+ -..|+|.+.|.||-+||.
T Consensus 446 v~hs--------------------------------------gRVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 446 VEHS--------------------------------------GRVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred hhcc--------------------------------------ceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 4433 489999995 478999999999999983
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-33 Score=290.83 Aligned_cols=283 Identities=13% Similarity=0.188 Sum_probs=237.4
Q ss_pred eecCCcccEEEEEEeeCCC-EEEEEEeecCCCCcccceeEEEEeEecc--CCcCcccceeee---------ccccCceEE
Q 011452 131 LNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYIRR--GKPDAGFALFES---------ESLKWPGFV 198 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t~~lw~i~~--G~~~~~~~lf~~---------~~~~~~~~V 198 (485)
+.. |...|.+-+|||--+ .|++++ .+ -+.++|++.. +... .+..|.+ ...+-+..+
T Consensus 174 vl~-~~~~V~~~~WnP~~~~llasg~----~~------s~ari~~l~e~~~~~~-~q~~lrh~~~~~~~s~~~nkdVT~L 241 (524)
T KOG0273|consen 174 VLR-HESEVFICAWNPLRDGLLASGS----GD------STARIWNLLENSNIGS-TQLVLRHCIREGGKSVPSNKDVTSL 241 (524)
T ss_pred ecc-CCCceEEEecCchhhhhhhccC----Cc------cceeeeeehhhccccc-hhhhhhhhhhhhcccCCccCCcceE
Confidence 444 788899999999988 777654 34 4888998854 1110 0112222 112345589
Q ss_pred EEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC
Q 011452 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (485)
Q Consensus 199 ~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~ 276 (485)
+++ .+|..||+|+.||.+|+|+ .+|.++.+|.. .+|.+++++..+..+.++ +-|+|+-|||..+|++-+.|..|
T Consensus 242 ~Wn-~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~--~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 242 DWN-NDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSG--GVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred Eec-CCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEec--cCCccEEEEeccCceEEEeeeec
Confidence 997 6999999999999999999 47888888864 589999999644444443 45689999999999999999988
Q ss_pred CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC-CCcEEE
Q 011452 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT 354 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~-~G~ll~ 354 (485)
...--.|.|. ++..+++++-|+.|+++-+.-..+..++.||.+.|+++-|.|.|.+|+|+| |+|+|||+. ++.++.
T Consensus 318 s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 318 SAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred cCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 7776678884 478899999999999999999999999999999999999999999999999 999999998 599999
Q ss_pred EeecCCCCCCCCCeeEEEECCC---------CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 355 SFEDHLLWHPDCNTNNIYITSD---------QDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 355 tl~gH~~~~~~~~v~svafSpD---------G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
.|.+|.-. |..+.+||+ |..|++++. |+||++||+..|+|+++|..|+
T Consensus 396 ~l~~Hske-----i~t~~wsp~g~v~~n~~~~~~l~sas~-----------dstV~lwdv~~gv~i~~f~kH~------- 452 (524)
T KOG0273|consen 396 DLQAHSKE-----IYTIKWSPTGPVTSNPNMNLMLASASF-----------DSTVKLWDVESGVPIHTLMKHQ------- 452 (524)
T ss_pred hhhhhccc-----eeeEeecCCCCccCCCcCCceEEEeec-----------CCeEEEEEccCCceeEeeccCC-------
Confidence 99999866 889999996 468888887 7999999999999999999998
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.|++|+|||||++|||||.||-|++|+.
T Consensus 453 -------------------------------~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 453 -------------------------------EPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred -------------------------------CceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 39999999999999999999999999973
No 28
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=5.8e-33 Score=300.50 Aligned_cols=278 Identities=14% Similarity=0.195 Sum_probs=230.7
Q ss_pred cceEEEEEecCEEEEEeCCCeEEeeecccCcEEEE-eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeE
Q 011452 96 SKIIEIVAARDIVFALAQSGVCAAFCRETNQRICF-LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (485)
Q Consensus 96 s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~t-l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~ 174 (485)
..|..-.+..+.+++++.|+|+++|+..+|+.+.+ +.| |.+.||+++|..-++.|+++|. | +|+++||
T Consensus 209 ~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS~----D------~t~rvWd 277 (537)
T KOG0274|consen 209 HVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGDKLVSGST----D------KTERVWD 277 (537)
T ss_pred chhhhheeecCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCCEEEEEec----C------CcEEeEe
Confidence 33444444568999999999999999999999998 888 9999999999987889999774 4 6999999
Q ss_pred eccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEc
Q 011452 175 IRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTK 252 (485)
Q Consensus 175 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss 252 (485)
..+|++.. .|. +|...|.-..-.+.++++||.|.|||||++.++.++.++. ...|++|.+. +.+++++ +
T Consensus 278 ~~sg~C~~---~l~----gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsg-s 348 (537)
T KOG0274|consen 278 CSTGECTH---SLQ----GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSG-S 348 (537)
T ss_pred cCCCcEEE---Eec----CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEE-e
Confidence 99999832 333 2333332112356788999999999999999999999986 4689999999 5555544 3
Q ss_pred CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC-CEEEEEeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcC
Q 011452 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLY 330 (485)
Q Consensus 253 ~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~-~~lls~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFsp 330 (485)
.|++|++||+.+|+||++|+||.++|.++.|. + ..+++|+.|++||+||+++. +|+.++.+|...|..+ ..
T Consensus 349 --~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~---~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~ 421 (537)
T KOG0274|consen 349 --YDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVD---SENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LL 421 (537)
T ss_pred --cCceEEEEEhhhceeeeeecCCcceEEEEEec---CcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--cc
Confidence 44799999999999999999999999999764 4 78999999999999999999 9999999999988665 55
Q ss_pred CCcEEEEEe-CCcEEEEeCC-CcEEEEeec-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 331 ENQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 331 dg~llaS~s-D~TIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
.++.|+|++ |++||+||.+ |++++++++ |... |..+++. -..+++++. |++++|||+.+
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~-----v~~l~~~--~~~il~s~~-----------~~~~~l~dl~~ 483 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGG-----VSALALG--KEEILCSSD-----------DGSVKLWDLRS 483 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCccc-----EEEeecC--cceEEEEec-----------CCeeEEEeccc
Confidence 788899999 9999999996 999999999 4443 7777776 356666665 79999999999
Q ss_pred CeEEEEecCCC
Q 011452 408 GKCLAKIRASN 418 (485)
Q Consensus 408 Gk~l~tl~gH~ 418 (485)
|++..++-.++
T Consensus 484 ~~~~~~l~~~~ 494 (537)
T KOG0274|consen 484 GTLIRTLLSTD 494 (537)
T ss_pred Cchhhhhhhcc
Confidence 99999886655
No 29
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=9.4e-33 Score=298.86 Aligned_cols=270 Identities=18% Similarity=0.247 Sum_probs=227.2
Q ss_pred cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccce-eeeccccCceEEEEeCCCCeEEEEe
Q 011452 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL-FESESLKWPGFVEFDDVNGKVLTYS 211 (485)
Q Consensus 133 g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~l-f~~~~~~~~~~V~Fs~pnG~~Las~ 211 (485)
+.++..+.+..|. + ..+++++ ++ +++.+|+...|+... . +. +|.+-++.++|. .-+.+|.+|
T Consensus 205 ~~~~~~~~~~q~~-~-~~~~~~s----~~------~tl~~~~~~~~~~i~---~~l~-GH~g~V~~l~~~-~~~~~lvsg 267 (537)
T KOG0274|consen 205 GTDDHVVLCLQLH-D-GFFKSGS----DD------STLHLWDLNNGYLIL---TRLV-GHFGGVWGLAFP-SGGDKLVSG 267 (537)
T ss_pred ccCcchhhhheee-c-CeEEecC----CC------ceeEEeecccceEEE---eecc-CCCCCceeEEEe-cCCCEEEEE
Confidence 3466778888888 3 4566644 55 788999998888622 1 22 466778899995 357899999
Q ss_pred eCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecC
Q 011452 212 AQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 212 s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~ 289 (485)
|.|.|+||||+.+|+|.+++.++ .|.++.+-+. ++++ ++.|.|||+|++++|++|+++.+|...|.+|...
T Consensus 268 S~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~--~~~s--gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--- 340 (537)
T KOG0274|consen 268 STDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF--LLVS--GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--- 340 (537)
T ss_pred ecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc--eEee--ccCCceEEEEeccCcceEEEeccccccEEEEEec---
Confidence 99999999999999999999764 5777776553 3344 3467999999999999999999999999999975
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C-cEEEEeecCCCCCCCC
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPDC 366 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G-~ll~tl~gH~~~~~~~ 366 (485)
+..+++++.|++|++||+.+++|+.++.||..+|.+++|.+. +.++||+ |++||+||++ + +|+.+|.+|..-
T Consensus 341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~---- 415 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL---- 415 (537)
T ss_pred CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc----
Confidence 678899999999999999999999999999999999988777 8899999 9999999997 6 799999999976
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC-CCCCCCCcccccCCCCCCCCccccccccc
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA-SNGLPAENECSCSGDYSSGSCNVKKHSHA 445 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (485)
|..+. ..+++|+|++. |++||+||+.+|+|+.++.+ |.
T Consensus 416 -v~~l~--~~~~~Lvs~~a-----------D~~Ik~WD~~~~~~~~~~~~~~~--------------------------- 454 (537)
T KOG0274|consen 416 -VSSLL--LRDNFLVSSSA-----------DGTIKLWDAEEGECLRTLEGRHV--------------------------- 454 (537)
T ss_pred -ccccc--cccceeEeccc-----------cccEEEeecccCceeeeeccCCc---------------------------
Confidence 65554 46789999987 79999999999999999999 43
Q ss_pred cccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 446 SRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 446 ~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|+++++. -.++++++.|++|++||+
T Consensus 455 -----------~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 455 -----------GGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred -----------ccEEEeecC--cceEEEEecCCeeEEEec
Confidence 278888887 578999999999999985
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.3e-32 Score=266.76 Aligned_cols=284 Identities=14% Similarity=0.173 Sum_probs=220.5
Q ss_pred EEEEeecCCcccEEEEEEeeC-CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC
Q 011452 127 RICFLNVTADEVIRSLFYNKN-NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG 205 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spd-g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG 205 (485)
.+.++.+ |.+.||+++++|- |..|||+| .| +.++||+...|.--.-.......|.+.+.+|+|+ |.|
T Consensus 6 ~~~~~~g-h~~r~W~~awhp~~g~ilAscg----~D------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g 73 (312)
T KOG0645|consen 6 LEQKLSG-HKDRVWSVAWHPGKGVILASCG----TD------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHG 73 (312)
T ss_pred eEEeecC-CCCcEEEEEeccCCceEEEeec----CC------ceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCC
Confidence 3456777 7779999999998 88898866 45 7999999644432110111112466778899998 899
Q ss_pred eEEEEeeCCCcEEEeecCCC--eEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC---eEEEEeecCCc
Q 011452 206 KVLTYSAQDSIYKVFDLKNY--TMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG---TVLKSFNHLLH 278 (485)
Q Consensus 206 ~~Las~s~D~tiKlWdl~~g--~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG---~~L~tl~~~~~ 278 (485)
++||++|.|.|+-||.-..+ +|+.+|.+ +.|-+|+||++|.+|++++. |+.|=||.+..+ +|+..|+.|++
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR--DKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR--DKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC--CCeEEEEEecCCCcEEEEeeeccccc
Confidence 99999999999999986644 48888875 58999999986666666554 489999988644 46789999999
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECC---CCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEE
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVR---NFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVT 354 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~---tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~ 354 (485)
-|+-|.|. |..+.|+++|+|+|||+|.-. .-+|.+++.+|..+|++++|.|.|+.|+|++ |+||+||-.. .
T Consensus 152 DVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~----~ 226 (312)
T KOG0645|consen 152 DVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY----T 226 (312)
T ss_pred cccEEEEc-CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----c
Confidence 99999998 556788888999999999866 3479999999999999999999999999999 9999999854 2
Q ss_pred Eeec-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC------eEEEE-ecCCCCCCCCccc
Q 011452 355 SFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG------KCLAK-IRASNGLPAENEC 426 (485)
Q Consensus 355 tl~g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG------k~l~t-l~gH~~~~~~~~~ 426 (485)
++.+ |... ++.|++- ...|||++. |+.|+|+.-..+ +.+.+ -.+|.
T Consensus 227 ~~~~~~sr~-----~Y~v~W~--~~~IaS~gg-----------D~~i~lf~~s~~~d~p~~~l~~~~~~aHe-------- 280 (312)
T KOG0645|consen 227 DLSGMHSRA-----LYDVPWD--NGVIASGGG-----------DDAIRLFKESDSPDEPSWNLLAKKEGAHE-------- 280 (312)
T ss_pred Ccchhcccc-----eEeeeec--ccceEeccC-----------CCEEEEEEecCCCCCchHHHHHhhhcccc--------
Confidence 2322 3323 7788887 458999987 799999965421 01111 11222
Q ss_pred ccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCC-CCEEEEecCCCcEEEccC
Q 011452 427 SCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDED-RNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD-g~~LaSgs~DgtVklWd~ 485 (485)
..|++|.|+|. +..|+||+.||+|++|.+
T Consensus 281 ------------------------------~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 281 ------------------------------VDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ------------------------------cccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 38999999995 889999999999999974
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5e-34 Score=291.10 Aligned_cols=272 Identities=15% Similarity=0.137 Sum_probs=228.3
Q ss_pred cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee---ccccCceEEEEeCCCCeEEEEee
Q 011452 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYSA 212 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~pnG~~Las~s 212 (485)
.-+|..|-|.|+|..|+++|..| ...||.. .. -.|++ +|-..+..++++ +||..++||+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SG----------EFtLWNg---~~----fnFEtilQaHDs~Vr~m~ws-~~g~wmiSgD 157 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSG----------EFTLWNG---TS----FNFETILQAHDSPVRTMKWS-HNGTWMISGD 157 (464)
T ss_pred ccceeeEEEcCCCceeEeecccc----------cEEEecC---ce----eeHHHHhhhhcccceeEEEc-cCCCEEEEcC
Confidence 34799999999999999988543 6778873 21 01222 344456789998 7999999999
Q ss_pred CCCcEEEeecCCCeEEEEE---cCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec
Q 011452 213 QDSIYKVFDLKNYTMLYSI---SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ 288 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l~tl---~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~ 288 (485)
.|+.||+|+.. -+.++.+ +...|+++|||| |.+++++ ++|++|||||..-.+.-..|.||.--+++|+|. |
T Consensus 158 ~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P 232 (464)
T KOG0284|consen 158 KGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-P 232 (464)
T ss_pred CCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEe---cCCCeEEEEeccCCchhheeccCCCCcceeccC-C
Confidence 99999999964 2333333 346899999998 7777765 456899999999999999999998889999998 4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCC
Q 011452 289 FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~ 366 (485)
.-+.++++|.|.+||+||.++|+|+.++.+|...|.++.|+|++.+|+|+| |.++|+.|++ =+.+.++.+|...
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd---- 308 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD---- 308 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh----
Confidence 567788889999999999999999999999999999999999999999999 9999999998 7789999999977
Q ss_pred CeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec-CCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 367 NTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR-ASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 367 ~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~-gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
|++++++| .-.++.||+. ||.|..|.+..-+.+..+. +|.
T Consensus 309 -v~~~~WhP~~~~lftsgg~-----------Dgsvvh~~v~~~~p~~~i~~AHd-------------------------- 350 (464)
T KOG0284|consen 309 -VTSLTWHPLNESLFTSGGS-----------DGSVVHWVVGLEEPLGEIPPAHD-------------------------- 350 (464)
T ss_pred -heeeccccccccceeeccC-----------CCceEEEeccccccccCCCcccc--------------------------
Confidence 99999999 4567777775 8999999998556665553 343
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..||+|+|+|=|++|+|||.|.+||.|.
T Consensus 351 ------------~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 351 ------------GEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ------------cceeeeeccccceeEeecCCCcceeeec
Confidence 3899999999999999999999999994
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=270.61 Aligned_cols=286 Identities=13% Similarity=0.148 Sum_probs=242.5
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~ 207 (485)
+-.+.+ |.+.|+.+.|+|+|..+||++ .| |.|-||.+ .|.+.....+- +|.+.+-.|.|. .||..
T Consensus 40 ~m~l~g-h~geI~~~~F~P~gs~~aSgG----~D------r~I~LWnv-~gdceN~~~lk--gHsgAVM~l~~~-~d~s~ 104 (338)
T KOG0265|consen 40 IMLLPG-HKGEIYTIKFHPDGSCFASGG----SD------RAIVLWNV-YGDCENFWVLK--GHSGAVMELHGM-RDGSH 104 (338)
T ss_pred hhhcCC-CcceEEEEEECCCCCeEeecC----Cc------ceEEEEec-cccccceeeec--cccceeEeeeec-cCCCE
Confidence 333555 888999999999999999854 56 89999995 67765422222 345666678997 79999
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEE
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~ 284 (485)
|.|+|.|++++.||+++|++++.+.+ .-|+++.-+. |..++.+++ .|+|+||||+.+-++++++.. .-.+.+|.
T Consensus 105 i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs--dD~t~kl~D~R~k~~~~t~~~-kyqltAv~ 181 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS--DDGTLKLWDIRKKEAIKTFEN-KYQLTAVG 181 (338)
T ss_pred EEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecC--CCceEEEEeecccchhhcccc-ceeEEEEE
Confidence 99999999999999999999988764 4688988664 777777654 569999999999999999952 14677999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC----Cc-EEEEeec
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----GE-LVTSFED 358 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~----G~-ll~tl~g 358 (485)
|. +..++..+++-|+.||+||++.++++.++.||.+.|..+..+|+|..++|-+ |.|+++||++ ++ ||..|+|
T Consensus 182 f~-d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 182 FK-DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred ec-ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 96 6788999999999999999999999999999999999999999999999999 9999999983 44 6999999
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
|..-- .-+....++||++..+..|+. |..+.+||..+-.++.+|.||..
T Consensus 261 ~~hnf-eknlL~cswsp~~~~i~ags~-----------dr~vyvwd~~~r~~lyklpGh~g------------------- 309 (338)
T KOG0265|consen 261 HIHNF-EKNLLKCSWSPNGTKITAGSA-----------DRFVYVWDTTSRRILYKLPGHYG------------------- 309 (338)
T ss_pred chhhh-hhhcceeeccCCCCccccccc-----------cceEEEeecccccEEEEcCCcce-------------------
Confidence 87521 112457899999999999886 79999999888899999999983
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
.|..++|+|.-.+|.|++.|++|.|
T Consensus 310 -------------------svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 310 -------------------SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred -------------------eEEEeeecCCCcEEEEeccCceeEe
Confidence 8999999999999999999999976
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=291.29 Aligned_cols=226 Identities=17% Similarity=0.304 Sum_probs=194.7
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG 267 (485)
+..+-+..+.+| | ..++||..|+||||||.++..|++.|.+ ..|.++.|.. ++++++ ++|.||++||++||
T Consensus 195 e~skgVYClQYD--D-~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisG--SSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--D-EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSG--SSDSTVRVWDVNTG 267 (499)
T ss_pred ccCCceEEEEec--c-hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEec--CCCceEEEEeccCC
Confidence 445556678886 3 4579999999999999999999998876 4798888864 355654 45589999999999
Q ss_pred eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC---eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcE
Q 011452 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 343 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg---~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TI 343 (485)
++|+++-||...|..+.|+ +++++++|.|.+|.+||+..- .|.++|.||-..|+.|-|+ .++++|+| |+||
T Consensus 268 e~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred chhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 9999999999999999997 689999999999999999865 3678899999999999775 55999999 9999
Q ss_pred EEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 011452 344 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPA 422 (485)
Q Consensus 344 klWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~ 422 (485)
|+|+.+ ++++++|.||.-. + .+.--.|++++|||. |.||||||+..|+||..|+||+.
T Consensus 343 kvW~~st~efvRtl~gHkRG-----I--AClQYr~rlvVSGSS-----------DntIRlwdi~~G~cLRvLeGHEe--- 401 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRG-----I--ACLQYRDRLVVSGSS-----------DNTIRLWDIECGACLRVLEGHEE--- 401 (499)
T ss_pred EEEeccceeeehhhhccccc-----c--eehhccCeEEEecCC-----------CceEEEEeccccHHHHHHhchHH---
Confidence 999996 9999999999743 3 233458999999986 89999999999999999999983
Q ss_pred CcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 423 ENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
-|.++-|+ .+.|+||..||+|||||+
T Consensus 402 -----------------------------------LvRciRFd--~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 402 -----------------------------------LVRCIRFD--NKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred -----------------------------------hhhheeec--CceeeeccccceEEEEec
Confidence 78899995 578999999999999984
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.5e-32 Score=275.75 Aligned_cols=357 Identities=14% Similarity=0.166 Sum_probs=266.5
Q ss_pred ccccchhhhhhhcccccccCccc--------ccchhHHHhhhccc------cccc-cccCCCCcccccccccccccceEE
Q 011452 36 DGFVNSVKKLQRREISSKRDRAF--------TMTDAQERFRNIRL------QEEY-DTHDPKGHCSMVLPFLRKRSKIIE 100 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l------~~~~-~~~~~~~~~~~~~~~~~~~s~V~~ 100 (485)
.+..+.|.||-+-|=+....+.| -.+.-.|--+.-++ .-|| .-+.+|.. +..+.|...|-+
T Consensus 35 ~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~p----l~~~~hdDWVSs 110 (423)
T KOG0313|consen 35 YGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKP----LQCFLHDDWVSS 110 (423)
T ss_pred ccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCc----cccccchhhhhh
Confidence 34556777888877665555544 22233333333332 2233 33444432 222347789999
Q ss_pred EEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCE---EEEEEeecCCCCcccceeEEEEeEecc
Q 011452 101 IVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDS---LITVSVYASDNFSSLRCRSTRIEYIRR 177 (485)
Q Consensus 101 i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~---Las~S~d~~~d~stL~~~t~~lw~i~~ 177 (485)
|..+++.|+++++||++++|++. |+++.++.| |.++|.++++-.-++. ++++| .| ++++||-+..
T Consensus 111 v~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas----~D------qtl~Lw~~~~ 178 (423)
T KOG0313|consen 111 VKGASKWILTGSYDGTSRIWDLK-GKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSAS----MD------QTLRLWKWNV 178 (423)
T ss_pred hcccCceEEEeecCCeeEEEecC-CceEEEEec-CCcceeeeEEEecCCccceEEEec----CC------ceEEEEEecC
Confidence 99999999999999999999988 999999988 8889998888444444 87766 46 8999999987
Q ss_pred CCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCe
Q 011452 178 GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHV 257 (485)
Q Consensus 178 G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~ 257 (485)
|..-.....-..+|-..+.+|+-+ ++|..+.|||.|.++|||+..+ +..-++..... .=....+.- .
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~---~rrk~~~~~--------~ 245 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVET-DEEDELESSSN---RRRKKQKRE--------K 245 (423)
T ss_pred chhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCC-Cccccccccch---hhhhhhhhh--------h
Confidence 776211111111455667788876 7999999999999999999432 22222221100 000011100 1
Q ss_pred eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEE
Q 011452 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS 337 (485)
. ..++..+-+|.||...|.+|.|.+ .+.+.++|+|+|||.||+.+|.++.++.+. ....++..+|...+||+
T Consensus 246 ~-----~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~ 317 (423)
T KOG0313|consen 246 E-----GGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLAS 317 (423)
T ss_pred c-----ccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeee
Confidence 1 136778999999999999999964 788899999999999999999999888655 47899999999999999
Q ss_pred Ee-CCcEEEEeCC---CcE-EEEeecCCCCCCCCCeeEEEECCCC-CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe-E
Q 011452 338 FR-NRTVAVWNFR---GEL-VTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNAGSINISNILTGK-C 410 (485)
Q Consensus 338 ~s-D~TIklWd~~---G~l-l~tl~gH~~~~~~~~v~svafSpDG-~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk-~ 410 (485)
|+ |+.|+|||.+ |.. .++|.||.+| |.++.++|-. ..|+|+|. |+|+||||+.+-+ .
T Consensus 318 gssdr~irl~DPR~~~gs~v~~s~~gH~nw-----Vssvkwsp~~~~~~~S~S~-----------D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDGSVVSQSLIGHKNW-----VSSVKWSPTNEFQLVSGSY-----------DNTVKLWDVRSTKAP 381 (423)
T ss_pred cCCCCceeecCCCCCCCceeEEeeecchhh-----hhheecCCCCceEEEEEec-----------CCeEEEEEeccCCCc
Confidence 99 9999999984 444 5799999999 9999999954 66788887 8999999999888 8
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|.+|.+|.+ .|.++.++. +..|+||+.|++|++..
T Consensus 382 lydI~~h~D--------------------------------------Kvl~vdW~~-~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 382 LYDIAGHND--------------------------------------KVLSVDWNE-GGLIVSGGADNKLRIFK 416 (423)
T ss_pred ceeeccCCc--------------------------------------eEEEEeccC-CceEEeccCcceEEEec
Confidence 999999974 899999974 77899999999999863
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-32 Score=276.60 Aligned_cols=235 Identities=17% Similarity=0.279 Sum_probs=216.2
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG 267 (485)
+|++|+.+|+|+ |-.+.+++||.|+||||||+++|++..++.++ .|.+|+||+-.-++.++. .|+.||-||++..
T Consensus 149 gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g--edk~VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG--EDKQVKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec--CCCeeEEEechhh
Confidence 589999999998 67899999999999999999999999999874 799999998777777655 4589999999999
Q ss_pred eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEE
Q 011452 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 346 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklW 346 (485)
+.++.+-||++.|..++.. |..+.|++++.|.|+||||+++...+.++.||...|.+|.+-|-.-.++|+| |.||+||
T Consensus 226 kvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred hhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 9999999999999999987 5677899999999999999999999999999999999999998777799999 9999999
Q ss_pred eCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 347 d~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
|+. |+-..++..|.-. |+.++..|.-..+||+|. ..||=|++..|+.++.|.+|+.
T Consensus 305 Dl~agkt~~tlt~hkks-----vral~lhP~e~~fASas~------------dnik~w~~p~g~f~~nlsgh~~------ 361 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKS-----VRALCLHPKENLFASASP------------DNIKQWKLPEGEFLQNLSGHNA------ 361 (460)
T ss_pred eeccCceeEeeecccce-----eeEEecCCchhhhhccCC------------ccceeccCCccchhhccccccc------
Confidence 996 9999999999866 999999999999999997 4699999999999999999983
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
-|.+|+...|| .+++|+..|++..||
T Consensus 362 --------------------------------iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 362 --------------------------------IINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred --------------------------------eeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 78899999987 588999999999998
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.6e-31 Score=256.53 Aligned_cols=254 Identities=13% Similarity=0.135 Sum_probs=212.2
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcC
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISP 243 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl~--~~~V~~VafSp 243 (485)
+|||+|...+|++.. .+++ .-.++..++.. ||++.||.++ -..||++|+.+++ .+.++. .++|.+|.|.-
T Consensus 20 hTIRfWqa~tG~C~r---Tiqh-~dsqVNrLeiT-pdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 20 HTIRFWQALTGICSR---TIQH-PDSQVNRLEIT-PDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC 93 (311)
T ss_pred ceeeeeehhcCeEEE---EEec-CccceeeEEEc-CCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence 899999999999943 3443 12456689997 7999999876 6789999999877 466664 57999999997
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC-Cc
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF-MT 322 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~-~~ 322 (485)
+++.+.+++ .|+|+||||+..-.|.+.|.+ ...|..|... |.-.-|+++-.++.|++||+.+..|.+.+..+. ..
T Consensus 94 dgrWMyTgs--eDgt~kIWdlR~~~~qR~~~~-~spVn~vvlh-pnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 94 DGRWMYTGS--EDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLH-PNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred cCeEEEecC--CCceEEEEeccCcccchhccC-CCCcceEEec-CCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence 666666654 569999999999888777774 4788898876 445567777899999999999998887775543 47
Q ss_pred eEEEEEcCCCcEEEEEe-CCcEEEEeCC-C------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 323 PSAFIFLYENQLFLTFR-NRTVAVWNFR-G------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 323 v~avaFspdg~llaS~s-D~TIklWd~~-G------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
|.+++..|||.+|+.+. -|+.-+|++- + +.+..|..|... +....+|||+++||++|.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~-----il~C~lSPd~k~lat~ss--------- 235 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH-----ILRCLLSPDVKYLATCSS--------- 235 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce-----EEEEEECCCCcEEEeecC---------
Confidence 89999999999999998 8999999983 3 245678888877 899999999999999986
Q ss_pred CCCCeEEEEeCCCC-eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEE
Q 011452 395 GNAGSINISNILTG-KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYT 473 (485)
Q Consensus 395 ~~DgtIklWdl~TG-k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaS 473 (485)
|.|+|||++.+- +.-..+++|+ +|||..+||.||++|+|
T Consensus 236 --dktv~iwn~~~~~kle~~l~gh~--------------------------------------rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 236 --DKTVKIWNTDDFFKLELVLTGHQ--------------------------------------RWVWDCAFSADGEYLVT 275 (311)
T ss_pred --CceEEEEecCCceeeEEEeecCC--------------------------------------ceEEeeeeccCccEEEe
Confidence 799999999887 7778899997 39999999999999999
Q ss_pred ecCCCcEEEccC
Q 011452 474 GNRHGLVHVWSN 485 (485)
Q Consensus 474 gs~DgtVklWd~ 485 (485)
||.|+++|+|+.
T Consensus 276 assd~~~rlW~~ 287 (311)
T KOG0315|consen 276 ASSDHTARLWDL 287 (311)
T ss_pred cCCCCceeeccc
Confidence 999999999984
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-32 Score=287.68 Aligned_cols=233 Identities=15% Similarity=0.228 Sum_probs=208.8
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
.+.+|.|. |....+..+-..|.|.|||.++.+++.+++ +.+|++.+|=+ -+.++++ + +|..||+++..|++.+
T Consensus 15 RVKsVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~G-s--DD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 15 RVKSVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTG-S--DDMQIRVFNYNTGEKV 90 (794)
T ss_pred ceeeeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEe-c--CCceEEEEecccceee
Confidence 45589997 677777777889999999999999999986 56899999997 5565554 3 4589999999999999
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcC-CCcEEEEEe-CCcEEEEe
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFsp-dg~llaS~s-D~TIklWd 347 (485)
++|..|.+.+++|+-+| ..-.+|++|+|-+||+||.+.+ .|.+++.||.+.|..|+|.| |...|||+| |+|||+|.
T Consensus 91 ~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred EEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 99999999999999874 4569999999999999999975 78999999999999999987 888999999 99999999
Q ss_pred CC-CcEEEEeecCCCCCCCCCeeEEEECCCC--CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011452 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424 (485)
Q Consensus 348 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDG--~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~ 424 (485)
+. -.+..||+||.-- ||.|.+-|-| -+|+||++ |.||||||.+|.+|++||.||.+
T Consensus 170 lgs~~~nfTl~gHekG-----VN~Vdyy~~gdkpylIsgaD-----------D~tiKvWDyQtk~CV~TLeGHt~----- 228 (794)
T KOG0276|consen 170 LGSPHPNFTLEGHEKG-----VNCVDYYTGGDKPYLISGAD-----------DLTIKVWDYQTKSCVQTLEGHTN----- 228 (794)
T ss_pred cCCCCCceeeeccccC-----cceEEeccCCCcceEEecCC-----------CceEEEeecchHHHHHHhhcccc-----
Confidence 94 8899999999976 9999998866 49999986 79999999999999999999984
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|..+.|+|.=.+|+|||+|||||||..
T Consensus 229 ---------------------------------Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 229 ---------------------------------NVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred ---------------------------------cceEEEecCCCcEEEEecCCccEEEecC
Confidence 7889999999999999999999999963
No 38
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=100.00 E-value=3.6e-29 Score=241.23 Aligned_cols=277 Identities=14% Similarity=0.183 Sum_probs=209.5
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
+.++++++.|+++++||..+|+++.++.+ +. .+++++|+|+|+.|+.++ ..+ .++.+|++.+|+...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~-~~~~l~~~~dg~~l~~~~---~~~------~~v~~~d~~~~~~~~-- 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-GQ-RPRGITLSKDGKLLYVCA---SDS------DTIQVIDLATGEVIG-- 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC-CC-CCCceEECCCCCEEEEEE---CCC------CeEEEEECCCCcEEE--
Confidence 35788999999999999999999998876 43 378999999999875433 133 589999998887621
Q ss_pred ceeeeccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEE
Q 011452 185 ALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklW 262 (485)
.+.. ...+..++|+ |+|+.| ++++.|+++++||+.+++++..+. +..+.+++|+|++.+++.+..+ ...+.+|
T Consensus 68 -~~~~--~~~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~-~~~~~~~ 142 (300)
T TIGR03866 68 -TLPS--GPDPELFALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET-TNMAHFI 142 (300)
T ss_pred -eccC--CCCccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecC-CCeEEEE
Confidence 1222 1224578897 788766 455679999999999998888876 4568899999977666554432 2467889
Q ss_pred ecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecccCC-------CceEEEEEcCCCcE
Q 011452 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEF-------MTPSAFIFLYENQL 334 (485)
Q Consensus 263 di~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~-------~~v~avaFspdg~l 334 (485)
|.++++++..+... .....++|+ ++++.|++++ .|++|++||+++++++..+..+. ..+..++|+|||+.
T Consensus 143 d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 143 DTKTYEIVDNVLVD-QRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred eCCCCeEEEEEEcC-CCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE
Confidence 99999988766422 345678886 6777786664 79999999999998877654321 23456889999998
Q ss_pred EEE-Ee-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 335 FLT-FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 335 laS-~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
++. .. +++|.+||.+ ++++..+..+ .. +..++|+|||++|++++. .+++|++||+.+++++
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~-----~~~~~~~~~g~~l~~~~~----------~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYEVLDYLLVG-QR-----VWQLAFTPDEKYLLTTNG----------VSNDVSVIDVAALKVI 284 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEeC-CC-----cceEEECCCCCEEEEEcC----------CCCeEEEEECCCCcEE
Confidence 543 44 7789999996 8887765422 22 789999999999998753 2799999999999999
Q ss_pred EEecCC
Q 011452 412 AKIRAS 417 (485)
Q Consensus 412 ~tl~gH 417 (485)
.+++..
T Consensus 285 ~~~~~~ 290 (300)
T TIGR03866 285 KSIKVG 290 (300)
T ss_pred EEEEcc
Confidence 999764
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=4.4e-31 Score=287.52 Aligned_cols=274 Identities=15% Similarity=0.202 Sum_probs=233.3
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
....|.+|+|.|---.|+++ |.-+.|.+||-+.|.+.. -|. +|-+.+..|.|. |.+.+++||++|
T Consensus 8 kSsRvKglsFHP~rPwILts----------lHsG~IQlWDYRM~tli~---rFd-eHdGpVRgv~FH-~~qplFVSGGDD 72 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTS----------LHSGVIQLWDYRMGTLID---RFD-EHDGPVRGVDFH-PTQPLFVSGGDD 72 (1202)
T ss_pred ccccccceecCCCCCEEEEe----------ecCceeeeehhhhhhHHh---hhh-ccCCccceeeec-CCCCeEEecCCc
Confidence 34578999999998887662 333699999999998733 244 467788899997 899999999999
Q ss_pred CcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCE
Q 011452 215 SIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK 292 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ 292 (485)
-+||||+.++-+|+++|.+| .|+.+.|++.--.+.|+| +|+||+||+.++++|+..++||.|.|.+.+|. |..+.
T Consensus 73 ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSAS--DDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-ptEDl 149 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSAS--DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-PTEDL 149 (1202)
T ss_pred cEEEEEecccceehhhhccccceeEEeeccCCCceEEEcc--CCCeEEEEeccCCceEEEEecCceEEEeeccC-Cccce
Confidence 99999999999999999864 899999998555555554 56999999999999999999999999999998 56778
Q ss_pred EEEEeCCCcEEEEECCCCe-----------------------------eEEecccCCCceEEEEEcCCCcEEEEEe-CCc
Q 011452 293 LLVKQENENLQILDVRNFE-----------------------------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 342 (485)
Q Consensus 293 lls~s~D~tIkIWDv~tg~-----------------------------~~~~l~gh~~~v~avaFspdg~llaS~s-D~T 342 (485)
++++|-|.|||+||+..-+ ...++.||.-.|+.++|.|.-.+++||+ |+.
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 8889999999999986310 1456789999999999999999999999 999
Q ss_pred EEEEeCC-Cc--EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 343 VAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 343 IklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
||+|-.+ .+ .+-|..||.+. |.++-|.|.+++|+|.|. |++||+||+...+++++++--+
T Consensus 230 VKlWrmnetKaWEvDtcrgH~nn-----Vssvlfhp~q~lIlSnsE-----------DksirVwDm~kRt~v~tfrren- 292 (1202)
T KOG0292|consen 230 VKLWRMNETKAWEVDTCRGHYNN-----VSSVLFHPHQDLILSNSE-----------DKSIRVWDMTKRTSVQTFRREN- 292 (1202)
T ss_pred eeEEEeccccceeehhhhcccCC-----cceEEecCccceeEecCC-----------CccEEEEecccccceeeeeccC-
Confidence 9999995 44 67899999976 999999999999999886 8999999999999999997533
Q ss_pred CCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 420 LPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
+.-|.|+-+|..+.+|.|-..|.+
T Consensus 293 -------------------------------------dRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 293 -------------------------------------DRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred -------------------------------------CeEEEEEecCCcceeeeecCCceE
Confidence 267789999999988877655544
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=3.8e-30 Score=259.98 Aligned_cols=324 Identities=9% Similarity=0.064 Sum_probs=263.3
Q ss_pred ccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEE
Q 011452 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLIT 153 (485)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las 153 (485)
..|+-|..+++.+...|. ...+|+|+.|-..-||++.+|..++++.+ |.+.|.++.||-||.+|||
T Consensus 58 ~tF~~H~~svFavsl~P~-------------~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLAT 123 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPN-------------NNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLAT 123 (399)
T ss_pred eehhhcCCceEEEEeCCC-------------CceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEe
Confidence 457778888888887777 88999999999999999999999999988 7888999999999999999
Q ss_pred EEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-
Q 011452 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS- 232 (485)
Q Consensus 154 ~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~- 232 (485)
+.-+ ..++||...+|... .++++. ..-+..+.+. |-+.+|+.|+.||.+-.|.+.++...+.+.
T Consensus 124 Gdms----------G~v~v~~~stg~~~--~~~~~e--~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 124 GDMS----------GKVLVFKVSTGGEQ--WKLDQE--VEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred cCCC----------ccEEEEEcccCceE--EEeecc--cCceEEEEec-ccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence 5543 48999999888752 233322 3334467786 799999999999999999999866555555
Q ss_pred -CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcc-eeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011452 233 -DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR-NKKVDFIEQFNEKLLVKQENENLQILDVRNF 310 (485)
Q Consensus 233 -~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~-~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg 310 (485)
+.++.+=.|.|+|+++..... |+||++||..||+++.++++..+. ...+.+. ..+..++.++.|+.+.+-+..+|
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~--dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYD--DGTIIVWNPKTGQPLHKITQAEGLELPCISLN-LAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred CCCCcccccccCCCceEEEEec--CceEEEEecCCCceeEEecccccCcCCccccc-cccceeEeccCCccEEEEccccc
Confidence 457999999987777766544 589999999999999999843322 3366765 45677777889999999999999
Q ss_pred eeEEecc--------cCCCceEEEE---EcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCC
Q 011452 311 ELTEVSR--------TEFMTPSAFI---FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 378 (485)
Q Consensus 311 ~~~~~l~--------gh~~~v~ava---Fspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~ 378 (485)
+.+..++ .|...+.+|. |+..-.++|.|+ ||+|.|||+.-.-++..--|... |..+-|-+ -.
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~-t~ 339 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN-TD 339 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-cc
Confidence 9887776 4555555554 566778899999 99999999974333333346655 89999998 67
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCC
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALED 458 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (485)
+|+++|. +|+||+||..||+|+.++.||+. .
T Consensus 340 ~l~t~c~-----------~g~v~~wDaRtG~l~~~y~GH~~--------------------------------------~ 370 (399)
T KOG0296|consen 340 YLLTACA-----------NGKVRQWDARTGQLKFTYTGHQM--------------------------------------G 370 (399)
T ss_pred hheeecc-----------CceEEeeeccccceEEEEecCch--------------------------------------h
Confidence 8888887 79999999999999999999983 8
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 459 ITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 459 V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|...+++||.+.++|+|.|++.+|.+
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 99999999999999999999999975
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=1.4e-29 Score=264.72 Aligned_cols=317 Identities=12% Similarity=0.130 Sum_probs=239.5
Q ss_pred cCEEEEEeCCCeEEeeeccc-CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe--ccCCc-
Q 011452 105 RDIVFALAQSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI--RRGKP- 180 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~t-G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i--~~G~~- 180 (485)
|.+||||..+|++|+|+..+ ...|+.-..--.+.|..|.|++|++.|+.++. |.++ ...+-+||- .-|++
T Consensus 71 G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGE-Grer-----fg~~F~~DSG~SvGei~ 144 (603)
T KOG0318|consen 71 GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGE-GRER-----FGHVFLWDSGNSVGEIT 144 (603)
T ss_pred ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEec-Cccc-----eeEEEEecCCCccceee
Confidence 99999999999999999664 33444322224568999999999999988764 4444 234455552 11111
Q ss_pred ------------------------Ccccceeee----------ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe
Q 011452 181 ------------------------DAGFALFES----------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT 226 (485)
Q Consensus 181 ------------------------~~~~~lf~~----------~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~ 226 (485)
|.....|+. +|.+.+.+|.|+ |||..+|+.+.|++|-|+|=++|+
T Consensus 145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCCCcc
Confidence 222223331 355667789998 899999999999999999999999
Q ss_pred EEEEEcC-----CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe----------------------------
Q 011452 227 MLYSISD-----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF---------------------------- 273 (485)
Q Consensus 227 ~l~tl~~-----~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl---------------------------- 273 (485)
.+..|.+ ..|.+|++|||+..+.++++ |.|+||||+.++++.+++
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa--Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSA--DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred EEEEecCCCCccccEEEEEECCCCceEEEecC--CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 9999962 47999999997777766665 489999999999888764
Q ss_pred ---------------ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccC------------------
Q 011452 274 ---------------NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RTE------------------ 319 (485)
Q Consensus 274 ---------------~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh------------------ 319 (485)
.||...+.++..+ +++.+|++++.||.|-=||..+|.+-+.. ++|
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEc-CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 3444445555554 67788899999999999998876432110 011
Q ss_pred --------------------------------------------------------------CCceEEEEEcCCCcEEEE
Q 011452 320 --------------------------------------------------------------FMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 320 --------------------------------------------------------------~~~v~avaFspdg~llaS 337 (485)
.-.+.++|++||++.+|-
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 123567889999999999
Q ss_pred Ee-CCcEEEEeCCC-cE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 338 FR-NRTVAVWNFRG-EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 338 ~s-D~TIklWd~~G-~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
|. |+.|.|+.+.| ++ ...++.|... +..|+|||||.+||++.. .+.|-+||+++.+....
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~-----iT~vaySpd~~yla~~Da-----------~rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAA-----ITDVAYSPDGAYLAAGDA-----------SRKVVLYDVASREVKTN 524 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCC-----ceEEEECCCCcEEEEecc-----------CCcEEEEEcccCceecc
Confidence 99 99999999985 43 3356788887 999999999999999865 58999999998876322
Q ss_pred ecC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 414 IRA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 414 l~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
--+ |+ ..|.+|+||||.+.+||||-|-.|.||+.
T Consensus 525 ~w~FHt--------------------------------------akI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 525 RWAFHT--------------------------------------AKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eeeeee--------------------------------------eeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 222 43 38999999999999999999999999973
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.2e-30 Score=276.68 Aligned_cols=277 Identities=14% Similarity=0.195 Sum_probs=230.8
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
+.+.|.||.|.|---.++. +.| + +++.||+-.+..+- +-|+-. -..+.+..|= +.-..++.||+|
T Consensus 12 rSdRVKsVd~HPtePw~la-~Ly---n------G~V~IWnyetqtmV---ksfeV~-~~PvRa~kfi-aRknWiv~GsDD 76 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILA-ALY---N------GDVQIWNYETQTMV---KSFEVS-EVPVRAAKFI-ARKNWIVTGSDD 76 (794)
T ss_pred cCCceeeeecCCCCceEEE-eee---c------CeeEEEecccceee---eeeeec-ccchhhheee-eccceEEEecCC
Confidence 6678999999998776654 443 3 68999997665542 234321 1234456665 466789999999
Q ss_pred CcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC-eEEEEeecCCcceeEEEEEecCCC
Q 011452 215 SIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG-~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
..|||++..|++.+.+++ .+.|++|+.+|..-.+.++| +|.+||+||.+.+ .|.++|+||.|.|..|+|.|-|+.
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS--DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n 154 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS--DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN 154 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC--CccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc
Confidence 999999999999999986 45899999999666666655 4589999999764 578999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcC--CCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCC
Q 011452 292 KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 367 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp--dg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~ 367 (485)
++++++-|.|||+|.+.+..+..+|.||...|++|.|-| |..+|+||+ |.||||||.+ -.|++||+||..-
T Consensus 155 tFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N----- 229 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN----- 229 (794)
T ss_pred ceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-----
Confidence 999999999999999999999999999999999999976 456899999 9999999997 7899999999965
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccc
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASR 447 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (485)
|+.++|.|.=-+|+|||. |||+|||+-.|=+...+
T Consensus 230 vs~v~fhp~lpiiisgsE-----------DGTvriWhs~Ty~lE~t---------------------------------- 264 (794)
T KOG0276|consen 230 VSFVFFHPELPIIISGSE-----------DGTVRIWNSKTYKLEKT---------------------------------- 264 (794)
T ss_pred ceEEEecCCCcEEEEecC-----------CccEEEecCcceehhhh----------------------------------
Confidence 999999999999999987 89999999776544433
Q ss_pred cccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 448 IRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 448 ~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
+.+.++.||+++-.+.+..++.|...|.|-|
T Consensus 265 ----Ln~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 265 ----LNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ----hhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 3445679999999999999999988887643
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-31 Score=288.29 Aligned_cols=240 Identities=16% Similarity=0.215 Sum_probs=209.8
Q ss_pred eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEec
Q 011452 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi 264 (485)
|++.+ ..+..++|. |.--.+.++-..|+|++||..=|+++..+ |+.+|+.|+|+|.+-+.+|++ +|..||+|+.
T Consensus 5 fEskS-sRvKglsFH-P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGG--DDykIkVWnY 80 (1202)
T KOG0292|consen 5 FESKS-SRVKGLSFH-PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG--DDYKIKVWNY 80 (1202)
T ss_pred hhccc-ccccceecC-CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecC--CccEEEEEec
Confidence 55532 335689997 78888888889999999999988888877 467999999999988888754 4589999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcE
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 343 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TI 343 (485)
.+.+||.||.||++.|+.|.|.. .=--++++|+|.||||||.++++|+.+++||.+.|.+..|.|...+++|+| |.||
T Consensus 81 k~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred ccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence 99999999999999999999973 234789999999999999999999999999999999999999999999999 9999
Q ss_pred EEEeCCCc------------------------------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 344 AVWNFRGE------------------------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 344 klWd~~G~------------------------------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
+|||+.|- ..+.|+||.-- ||-++|.|.--+|+||++
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-----VNwaAfhpTlpliVSG~D-------- 226 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-----VNWAAFHPTLPLIVSGAD-------- 226 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-----cceEEecCCcceEEecCC--------
Confidence 99995431 12468888765 999999999999999986
Q ss_pred cCCCCeEEEEeCCCCe--EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE
Q 011452 394 EGNAGSINISNILTGK--CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI 471 (485)
Q Consensus 394 ~~~DgtIklWdl~TGk--~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L 471 (485)
|..||||....-+ .+-|.+||.+ .|++|-|+|.-..|
T Consensus 227 ---DRqVKlWrmnetKaWEvDtcrgH~n--------------------------------------nVssvlfhp~q~lI 265 (1202)
T KOG0292|consen 227 ---DRQVKLWRMNETKAWEVDTCRGHYN--------------------------------------NVSSVLFHPHQDLI 265 (1202)
T ss_pred ---cceeeEEEeccccceeehhhhcccC--------------------------------------CcceEEecCcccee
Confidence 7999999976444 5778899985 79999999999999
Q ss_pred EEecCCCcEEEccC
Q 011452 472 YTGNRHGLVHVWSN 485 (485)
Q Consensus 472 aSgs~DgtVklWd~ 485 (485)
.|.|+|++|||||.
T Consensus 266 lSnsEDksirVwDm 279 (1202)
T KOG0292|consen 266 LSNSEDKSIRVWDM 279 (1202)
T ss_pred EecCCCccEEEEec
Confidence 99999999999984
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2e-31 Score=276.30 Aligned_cols=288 Identities=14% Similarity=0.203 Sum_probs=243.4
Q ss_pred CcEEEEeecCCcccEEEEEEee-CCCEEEEEEeecCCCCcccceeEEEEeEecc-CCcCcccceeeeccccCceEEEEeC
Q 011452 125 NQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLKWPGFVEFDD 202 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~sp-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~ 202 (485)
-+.++++.| |...|.++-|.| -+.+|.+++. | ..++||++.. |++. ..|. +|...+..+.|+
T Consensus 204 kk~~~~~~g-H~kgvsai~~fp~~~hLlLS~gm----D------~~vklW~vy~~~~~l---rtf~-gH~k~Vrd~~~s- 267 (503)
T KOG0282|consen 204 KKLSHNLSG-HTKGVSAIQWFPKKGHLLLSGGM----D------GLVKLWNVYDDRRCL---RTFK-GHRKPVRDASFN- 267 (503)
T ss_pred HhheeeccC-CccccchhhhccceeeEEEecCC----C------ceEEEEEEecCccee---hhhh-cchhhhhhhhcc-
Confidence 456778888 888999999999 8999988664 4 5999999955 6663 2344 355667789998
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc--eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcc
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI--MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~--~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~ 279 (485)
.+|..+.|+|.|+++|+||++||+++..++ +..+.+|+|.|++ +++++. .|+.|+.||+.+|+.++.+..|++.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~---sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG---SDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec---CCCcEEEEeccchHHHHHHHhhhhh
Confidence 799999999999999999999999999998 5678999999844 555543 4589999999999999999999999
Q ss_pred eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC----CcEE
Q 011452 280 NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----GELV 353 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~----G~ll 353 (485)
+..|.|. ++|.+.+++++|++++||+.+.+-.++.. ..+.....++...|++..++.=+ |+-|-|.... -...
T Consensus 345 i~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 345 ILDITFV-DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK 423 (503)
T ss_pred eeeeEEc-cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence 9999998 67999999999999999999988765543 33444667888999999999999 9999999863 2345
Q ss_pred EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCC
Q 011452 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYS 433 (485)
Q Consensus 354 ~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~ 433 (485)
..|+||... .+ -..|.|||||.+|+||+. ||.+.+||..|-+++.++++|+
T Consensus 424 K~feGh~va--Gy-s~~v~fSpDG~~l~SGds-----------dG~v~~wdwkt~kl~~~lkah~--------------- 474 (503)
T KOG0282|consen 424 KRFEGHSVA--GY-SCQVDFSPDGRTLCSGDS-----------DGKVNFWDWKTTKLVSKLKAHD--------------- 474 (503)
T ss_pred hhhcceecc--Cc-eeeEEEcCCCCeEEeecC-----------CccEEEeechhhhhhhccccCC---------------
Confidence 689999865 33 357999999999999986 7999999999999999999997
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCC-CEEEEecCCCcEEEcc
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR-NEIYTGNRHGLVHVWS 484 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg-~~LaSgs~DgtVklWd 484 (485)
+.+..+.|+|-- ..+||++.||.||+|+
T Consensus 475 -----------------------~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 -----------------------QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----------------------cceEEEEecCCCcceeEecccCceeEecC
Confidence 288999999965 5799999999999997
No 45
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.2e-31 Score=265.98 Aligned_cols=290 Identities=16% Similarity=0.205 Sum_probs=242.5
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc-----cceeeeccccCceEEEEeC
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-----FALFESESLKWPGFVEFDD 202 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~-----~~lf~~~~~~~~~~V~Fs~ 202 (485)
-+++..+...-+.+..|||||++|+++|+|| -+.+|+..+|++... +.-|-. .-..+..+.||
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDG----------FiEVWny~~GKlrKDLkYQAqd~fMM-md~aVlci~FS- 272 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDGQYLVSGSVDG----------FIEVWNYTTGKLRKDLKYQAQDNFMM-MDDAVLCISFS- 272 (508)
T ss_pred hhheecccccchhheeeCCCCceEeeccccc----------eeeeehhccchhhhhhhhhhhcceee-cccceEEEeec-
Confidence 3445555666688999999999999988754 788999999998422 222221 12345578998
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~ 278 (485)
-|...||+|++||.||||.+.+|.|+..+. ...|.++.|| ++..++++ +.|.|+||--+..|++|+.|+||..
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~---sfD~tvRiHGlKSGK~LKEfrGHsS 349 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA---SFDQTVRIHGLKSGKCLKEFRGHSS 349 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcc---cccceEEEeccccchhHHHhcCccc
Confidence 799999999999999999999999998884 5689999999 56666643 5679999999999999999999999
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc--cCCCceEEEEEcCC-CcEEEEEe-CCcEEEEeCCCcEEE
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR--TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFRGELVT 354 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~--gh~~~v~avaFspd-g~llaS~s-D~TIklWd~~G~ll~ 354 (485)
.+..+.|. ++|..+++++.|+|||+|+..+.+|+.+++ +..-.|++|+..|- -..++.+. .+||-|-|++|+.++
T Consensus 350 yvn~a~ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr 428 (508)
T KOG0275|consen 350 YVNEATFT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR 428 (508)
T ss_pred cccceEEc-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe
Confidence 99999996 789999999999999999999999999974 45568999987664 45677777 999999999999999
Q ss_pred EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCC
Q 011452 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSS 434 (485)
Q Consensus 355 tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~ 434 (485)
+|..-.-. .+-.-+.+.||.|++|-+.+. |+.+.-+++.+|++-.++.-|+.
T Consensus 429 sfsSGkRE--gGdFi~~~lSpkGewiYcigE-----------D~vlYCF~~~sG~LE~tl~VhEk--------------- 480 (508)
T KOG0275|consen 429 SFSSGKRE--GGDFINAILSPKGEWIYCIGE-----------DGVLYCFSVLSGKLERTLPVHEK--------------- 480 (508)
T ss_pred eeccCCcc--CCceEEEEecCCCcEEEEEcc-----------CcEEEEEEeecCceeeeeecccc---------------
Confidence 99743321 122457788999999988765 89999999999999999999972
Q ss_pred CCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 435 GSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|-.++-+|-.+.|||=|+||++|||.
T Consensus 481 -----------------------dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 -----------------------DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -----------------------cccccccCcccchhhhhcccchhhhcC
Confidence 788999999999999999999999995
No 46
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.4e-31 Score=271.48 Aligned_cols=345 Identities=13% Similarity=0.092 Sum_probs=252.4
Q ss_pred CccccchhhhhhhcccccccCcccccchhHHHhhhccccccccccCCCCcccccccccccc-cc----eEEEEEe--cCE
Q 011452 35 FDGFVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKR-SK----IIEIVAA--RDI 107 (485)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-s~----V~~i~~s--~~~ 107 (485)
-++..-.++-+|-|-.....+++..- |+-=-.+.|-.-..+.+.|.. ++..+|.... ++ |..|... |..
T Consensus 35 VDy~s~v~~~~~nR~~~~~~d~~~~~---p~~~~~~~~~pp~~~~~dp~~-~~~tKf~h~s~NKvkc~V~~v~WtPeGRR 110 (464)
T KOG0284|consen 35 VDYNSPVCNYRQNRRWQYDRDRALLQ---PDSSYIIDLVPPSLYLDDPSS-AFTTKFVHTSSNKVKCPVNVVRWTPEGRR 110 (464)
T ss_pred cCCCcHHHHHHHHHhhcccccccccC---CCchhhhcccChhhccCCccc-ccccceEeccccccccceeeEEEcCCCce
Confidence 45566666667766655554554321 111122333322333333332 3335554433 34 4445555 899
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccccee
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf 187 (485)
|++|+++|-..|||.. .=...++...|+..|+++.++++|..++|++. + ..||+|+...... +.+
T Consensus 111 Lltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~----g------G~iKyWqpnmnnV----k~~ 175 (464)
T KOG0284|consen 111 LLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNGTWMISGDK----G------GMIKYWQPNMNNV----KII 175 (464)
T ss_pred eEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCCCEEEEcCC----C------ceEEecccchhhh----HHh
Confidence 9999999999999942 22223456679999999999999999998553 3 6999999643332 234
Q ss_pred eeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC
Q 011452 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIE 265 (485)
Q Consensus 188 ~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~ 265 (485)
...+-..+..|+|+ |+...++++|.|++|||||...++.-..|. +-.|.+|+++|..-|+++++. |.+|||||..
T Consensus 176 ~ahh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk--DnlVKlWDpr 252 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK--DNLVKLWDPR 252 (464)
T ss_pred hHhhhhhhheeccC-CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC--CceeEeecCC
Confidence 33233456799999 566777899999999999998888655554 457999999997777766554 4799999999
Q ss_pred CCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC-CcEEEEEe-CCcE
Q 011452 266 DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTV 343 (485)
Q Consensus 266 tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd-g~llaS~s-D~TI 343 (485)
+|+||.++.+|.+.|.+|.|. +.+..||++|.|.++|++|+++-+.+.++++|...|++++++|= -.+|.|++ |+.|
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred CcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999999999997 66789999999999999999998889999999999999999984 45677777 9999
Q ss_pred EEEeCC-CcEEEEee-cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC-CCCeEEEEecCCC
Q 011452 344 AVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI-LTGKCLAKIRASN 418 (485)
Q Consensus 344 klWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl-~TGk~l~tl~gH~ 418 (485)
..|.+. -+.+-.++ +|..- |+++++.|=|.+|++|+. |.|+|.|.- ..|+-.+..-++.
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~-----iwsl~~hPlGhil~tgsn-----------d~t~rfw~r~rp~d~~~~~~~~~ 393 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGE-----IWSLAYHPLGHILATGSN-----------DRTVRFWTRNRPGDKNADDVGLS 393 (464)
T ss_pred EEEeccccccccCCCcccccc-----eeeeeccccceeEeecCC-----------CcceeeeccCCCCCccccccccc
Confidence 999996 44444443 56544 999999999999999886 899999974 2344444444433
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-30 Score=264.40 Aligned_cols=285 Identities=12% Similarity=0.188 Sum_probs=233.7
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe-ccCCcCcccceeee--ccccCceEEEEeCCCC
Q 011452 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFES--ESLKWPGFVEFDDVNG 205 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i-~~G~~~~~~~lf~~--~~~~~~~~V~Fs~pnG 205 (485)
.+|.- |.+-||=+.||+||++|||+|.| .|+-||.+ ..+++ +|..+ +|...+.++.|| ||.
T Consensus 218 qil~~-htdEVWfl~FS~nGkyLAsaSkD----------~Taiiw~v~~d~~~----kl~~tlvgh~~~V~yi~wS-PDd 281 (519)
T KOG0293|consen 218 QILQD-HTDEVWFLQFSHNGKYLASASKD----------STAIIWIVVYDVHF----KLKKTLVGHSQPVSYIMWS-PDD 281 (519)
T ss_pred hhHhh-CCCcEEEEEEcCCCeeEeeccCC----------ceEEEEEEecCcce----eeeeeeecccCceEEEEEC-CCC
Confidence 35555 77779999999999999998843 48889988 34442 33332 344556688998 788
Q ss_pred eEEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC-ccee
Q 011452 206 KVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL-HRNK 281 (485)
Q Consensus 206 ~~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~-~~~~ 281 (485)
++|++|+.|..+++||+.+|.+.+..+ +..|.++++.||+..+++++ .|.+|-.||+ +|.++..-++-. ..+.
T Consensus 282 ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs--~dr~i~~wdl-Dgn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS--PDRTIIMWDL-DGNILGNWEGVRDPKVH 358 (519)
T ss_pred CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC--CCCcEEEecC-CcchhhcccccccceeE
Confidence 999999999999999999999887775 35799999999888888865 4589999997 888888777521 3467
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecC
Q 011452 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 359 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH 359 (485)
.++.. +||.++++...|..|+|++.++..++.....| ..+.++..|-||++++.-= +.+|.+||++ .++++.+.||
T Consensus 359 dlait-~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 359 DLAIT-YDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred EEEEc-CCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 88864 78999999999999999999998887655444 4799999999999999887 9999999996 8899999999
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccc
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNV 439 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 439 (485)
...+.- |.+..=--|.++|||||. |+.|+||+..+|+.+++|.||..
T Consensus 437 kq~~fi--IrSCFgg~~~~fiaSGSE-----------D~kvyIWhr~sgkll~~LsGHs~-------------------- 483 (519)
T KOG0293|consen 437 KQGHFI--IRSCFGGGNDKFIASGSE-----------DSKVYIWHRISGKLLAVLSGHSK-------------------- 483 (519)
T ss_pred cccceE--EEeccCCCCcceEEecCC-----------CceEEEEEccCCceeEeecCCcc--------------------
Confidence 875422 555444457799999987 79999999999999999999972
Q ss_pred cccccccccccchhcccCCeEEEEEcCCC-CEEEEecCCCcEEEccC
Q 011452 440 KKHSHASRIRSTVAEALEDITALFYDEDR-NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~V~sl~fspDg-~~LaSgs~DgtVklWd~ 485 (485)
.|.+|+++|.. .++||||.|||||+|.+
T Consensus 484 ------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 484 ------------------TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ------------------eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 89999999966 56999999999999963
No 48
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.6e-29 Score=269.05 Aligned_cols=237 Identities=14% Similarity=0.160 Sum_probs=189.6
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE-------------E--cCCcEEEEEEcC-CceEEEEEcCCCCeeEEE
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-------------I--SDKNVQEIKISP-GIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t-------------l--~~~~V~~VafSp-g~~ll~sss~~~D~tIkl 261 (485)
..++ +|+..+++++.+.....|+...|..+.. + |...|.+|+|+| ++.++++++ .|++|+|
T Consensus 26 ~~~~-~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS--~DgtIkI 102 (493)
T PTZ00421 26 STAL-WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS--EDGTIMG 102 (493)
T ss_pred cccc-CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe--CCCEEEE
Confidence 3454 5667777788888888888766554321 2 345799999999 665555554 4589999
Q ss_pred EecCCC-------eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE
Q 011452 262 LSIEDG-------TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 262 Wdi~tG-------~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l 334 (485)
||+.++ +++.+|.+|...+..|+|++..+..|++++.|++|+|||+++++++..+.+|...|.+++|+|+|++
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 999876 3578899999999999998433467888899999999999999999999999999999999999999
Q ss_pred EEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe-EE
Q 011452 335 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK-CL 411 (485)
Q Consensus 335 laS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk-~l 411 (485)
|+|++ |++|+|||++ |+++.++.+|... .+..+.|.|++.+|++++.+ .+.|++|+|||+.+.+ ++
T Consensus 183 Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~----~~~~~~w~~~~~~ivt~G~s-------~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASA----KSQRCLWAKRKDLIITLGCS-------KSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EEEecCCCEEEEEECCCCcEEEEEecCCCC----cceEEEEcCCCCeEEEEecC-------CCCCCeEEEEeCCCCCCce
Confidence 99999 9999999996 9999999999754 14578899999999887642 2357999999998654 45
Q ss_pred EEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecC-CCcEEEccC
Q 011452 412 AKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR-HGLVHVWSN 485 (485)
Q Consensus 412 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~-DgtVklWd~ 485 (485)
.++..|.. ..+....|+||++.|++|+. |++||+||+
T Consensus 252 ~~~~~d~~-------------------------------------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 252 STVDLDQS-------------------------------------SALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred eEeccCCC-------------------------------------CceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 44443331 15667899999999999884 999999984
No 49
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=6.5e-30 Score=273.58 Aligned_cols=278 Identities=16% Similarity=0.210 Sum_probs=228.4
Q ss_pred cEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceE-EEEeCCC
Q 011452 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF-VEFDDVN 204 (485)
Q Consensus 126 ~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~-V~Fs~pn 204 (485)
++-|.+.| |+.-|+.|+..+.. .|+++| .| +++++|.-+.++... ...|+ ++.+++.. ++|.+.+
T Consensus 5 ~ls~~l~g-H~~DVr~v~~~~~~-~i~s~s----Rd------~t~~vw~~~~~~~l~-~~~~~-~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHELEG-HKSDVRAVAVTDGV-CIISGS----RD------GTVKVWAKKGKQYLE-THAFE-GPKGFIANSICYAESD 70 (745)
T ss_pred eeEEEecc-CccchheeEecCCe-EEeecC----CC------CceeeeeccCccccc-ceecc-cCcceeeccceecccc
Confidence 45577877 77779999988866 577755 44 699999954444422 12233 24555544 6775445
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeE
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~ 282 (485)
+-.|..|+.|.+|-||.+.+...+++|.+| +|.++.+--++.++ ++ +-|.|+|+|-+ |++..++.+|+..||+
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~i-Sg--SWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLI-SG--SWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceE-ec--ccccceEEecc--hhhhcccCCcchheee
Confidence 556889999999999999999999999764 79999877666654 43 45699999985 7899999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCC
Q 011452 283 VDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL 361 (485)
Q Consensus 283 V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~ 361 (485)
|++.+ .+++++||.|+|||||.- +++++++.||++.|+.+++.|++. |+|++ ||.|++|+++|+++..+.||+.
T Consensus 146 v~~l~--e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn 220 (745)
T KOG0301|consen 146 VASLP--ENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTN 220 (745)
T ss_pred eeecC--CCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccce
Confidence 99874 349999999999999986 899999999999999999999987 66888 9999999999999999999999
Q ss_pred CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccc
Q 011452 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 362 ~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 441 (485)
. |.++...++++.|+|++. |+|+|||+. ++|++.|+=..
T Consensus 221 ~-----vYsis~~~~~~~Ivs~gE-----------DrtlriW~~--~e~~q~I~lPt----------------------- 259 (745)
T KOG0301|consen 221 F-----VYSISMALSDGLIVSTGE-----------DRTLRIWKK--DECVQVITLPT----------------------- 259 (745)
T ss_pred E-----EEEEEecCCCCeEEEecC-----------CceEEEeec--CceEEEEecCc-----------------------
Confidence 8 999998899999999986 899999996 49999996432
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
-.||++.+=++|. ||+|+.||.||||.
T Consensus 260 ---------------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 260 ---------------TSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred ---------------cceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 2789999999997 77889999999994
No 50
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=6.1e-30 Score=250.63 Aligned_cols=292 Identities=15% Similarity=0.212 Sum_probs=229.1
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEE
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTY 210 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las 210 (485)
|+| |+-++.-|-||.+|++|.|++.| .++.+|+-..|+... .+. +|.+.+|++..| -+.+.|++
T Consensus 6 l~G-HERplTqiKyN~eGDLlFscaKD----------~~~~vw~s~nGerlG---ty~-GHtGavW~~Did-~~s~~liT 69 (327)
T KOG0643|consen 6 LQG-HERPLTQIKYNREGDLLFSCAKD----------STPTVWYSLNGERLG---TYD-GHTGAVWCCDID-WDSKHLIT 69 (327)
T ss_pred ccc-CccccceEEecCCCcEEEEecCC----------CCceEEEecCCceee---eec-CCCceEEEEEec-CCcceeee
Confidence 566 99999999999999999998853 488899987888632 121 577888899887 58899999
Q ss_pred eeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCC---CeeEEEEecC-------CCeEEEEeecCCcc
Q 011452 211 SAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASG---HVPLKILSIE-------DGTVLKSFNHLLHR 279 (485)
Q Consensus 211 ~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~---D~tIklWdi~-------tG~~L~tl~~~~~~ 279 (485)
||.|.++||||+++|++++++. +..|..+.|++++.++..+.+.. -..|-+.|++ .-+++..+..+...
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK 149 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence 9999999999999999999998 56899999998666655544432 2578899988 44446666655555
Q ss_pred eeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 280 NKKVDFIEQFNEKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
+..+-|. |-++.|+++.+|+.|.+||+++| +.++.-+-|...|+.+.|+||..+|+|+| |.|-||||++ -++++|+
T Consensus 150 it~a~Wg-~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 150 ITSALWG-PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeeeec-ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 6666665 67899999999999999999998 45666678999999999999999999999 9999999996 8999999
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCC-CCCcCCCC--eEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD-PLAEGNAG--SINISNILTGKCLAKIRASNGLPAENECSCSGDYS 433 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d-~~~~~~Dg--tIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~ 433 (485)
.--. .||+.+|+|-.+.++-|+..+.-| -.+..+.| -.|.+++-..+.+..++||=
T Consensus 229 ~te~------PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF--------------- 287 (327)
T KOG0643|consen 229 TTER------PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF--------------- 287 (327)
T ss_pred eecc------cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc---------------
Confidence 8643 389999999999999887521111 00001111 13444444455666666764
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
.+|.+|||+|||+-.+||++||.|||-
T Consensus 288 -----------------------GPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 288 -----------------------GPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred -----------------------cCcceeEECCCCcccccCCCCceEEEE
Confidence 399999999999999999999999983
No 51
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.7e-29 Score=267.51 Aligned_cols=297 Identities=14% Similarity=0.144 Sum_probs=248.8
Q ss_pred eCCCeEEeeeccc-CcE------E--EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc
Q 011452 112 AQSGVCAAFCRET-NQR------I--CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (485)
Q Consensus 112 s~dgtiklW~~~t-G~~------l--~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~ 182 (485)
-.+.++.++.++. +.. + -++.| |.+-||++.+|.|+..|+|++ . ..++||+..++++.
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~G-HR~dVRsl~vS~d~~~~~Sga----~-------~SikiWn~~t~kci- 407 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGG-HRSDVRSLCVSSDSILLASGA----G-------ESIKIWNRDTLKCI- 407 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeecc-chhheeEEEeecCceeeeecC----C-------CcEEEEEccCccee-
Confidence 5567777877664 222 1 13444 888899999999998777744 2 48999999889983
Q ss_pred ccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
..++. +++-...|- |.+++++.|...|.+.|+|+....++-++. +..||+|+.+|++.-.+++++ |+|||
T Consensus 408 --RTi~~---~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa--DktVk 479 (888)
T KOG0306|consen 408 --RTITC---GYILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA--DKTVK 479 (888)
T ss_pred --EEecc---ccEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC--CcEEE
Confidence 23444 356678896 799999999999999999999999888875 678999999998887777665 58999
Q ss_pred EEecC-----CCeEEEEeec-------CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 261 ILSIE-----DGTVLKSFNH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 261 lWdi~-----tG~~L~tl~~-------~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
+||.+ .|..-+.|.- ....+.+|.++ ||+..|+++=-|.|++|+-+.+-+..-.|-||.-+|.++-.
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc-CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEec
Confidence 99863 1332222221 23456789987 67777777779999999999999999999999999999999
Q ss_pred cCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 329 LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|||+++++|+| |++||+|-++ |.|-++|-+|.+. |.+|.|-|+-.+..|+++ |+.||=||-.
T Consensus 559 S~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS-----vm~V~F~P~~~~FFt~gK-----------D~kvKqWDg~ 622 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS-----VMSVQFLPKTHLFFTCGK-----------DGKVKQWDGE 622 (888)
T ss_pred cCCcCeEEeccCCCceEEeccccchhhhhhhcccCc-----eeEEEEcccceeEEEecC-----------cceEEeechh
Confidence 99999999999 9999999999 9999999999987 999999999999999988 7999999988
Q ss_pred CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 407 TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 407 TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.-+++++|.+|.. .|++++.+|+|.+++|+|.|.+||+|.
T Consensus 623 kFe~iq~L~~H~~--------------------------------------ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 623 KFEEIQKLDGHHS--------------------------------------EVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred hhhhheeeccchh--------------------------------------eeeeeEEcCCCCeEEeccCCceeEeee
Confidence 8899999999972 899999999999999999999999995
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1e-29 Score=245.79 Aligned_cols=233 Identities=15% Similarity=0.249 Sum_probs=201.5
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
.+.+..|.|. .||++..+++.|+|||||+...|.++++.. +++|.+++.+- +.+++ + ..+|+.+.+||++||+
T Consensus 17 qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~-s--~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 17 QGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFA-S--CGGDKAVQVWDVNTGK 92 (307)
T ss_pred ccceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccc-c--CCCCceEEEEEcccCe
Confidence 3556789997 899999999999999999999999998875 67999999994 55554 3 3566999999999999
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC--CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEE
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 345 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t--g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIkl 345 (485)
.++.|.+|.+.+..|.|.+ +...+++++.|.++|+||.++ .++++++..-.+.|.++... +..+++|| |||++.
T Consensus 93 v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 9999999999999999974 345677789999999999886 47899998888999999764 56789999 999999
Q ss_pred EeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011452 346 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424 (485)
Q Consensus 346 Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~ 424 (485)
+|++ |++.-..-||. |++|.|||||+....+|. |+||||-|-.|||+|+..+||.+-
T Consensus 170 ydiR~G~l~sDy~g~p-------it~vs~s~d~nc~La~~l-----------~stlrLlDk~tGklL~sYkGhkn~---- 227 (307)
T KOG0316|consen 170 YDIRKGTLSSDYFGHP-------ITSVSFSKDGNCSLASSL-----------DSTLRLLDKETGKLLKSYKGHKNM---- 227 (307)
T ss_pred EEeecceeehhhcCCc-------ceeEEecCCCCEEEEeec-----------cceeeecccchhHHHHHhcccccc----
Confidence 9997 99988888886 999999999999999998 799999999999999999999840
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+ .=....|+.--..++|||+||.|.+||+
T Consensus 228 ----------------------------e----ykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 228 ----------------------------E----YKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ----------------------------e----eeeeeeecccceeEEeccCCceEEEEEe
Confidence 1 1223567777788999999999999985
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=7.9e-29 Score=245.69 Aligned_cols=279 Identities=10% Similarity=0.104 Sum_probs=226.6
Q ss_pred cccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcE--EEEeecCCcccEEEEEEeeCCCEEE
Q 011452 75 EYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR--ICFLNVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~--l~tl~g~~~~~i~sv~~spdg~~La 152 (485)
+...|...++.+-|.|. |..+|+++.|+.|-||+.. |.| .-++++ |.+.|..|-|++||..|.
T Consensus 42 ~l~gh~geI~~~~F~P~-------------gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkg-HsgAVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPD-------------GSCFASGGSDRAIVLWNVY-GDCENFWVLKG-HSGAVMELHGMRDGSHIL 106 (338)
T ss_pred hcCCCcceEEEEEECCC-------------CCeEeecCCcceEEEEecc-ccccceeeecc-ccceeEeeeeccCCCEEE
Confidence 33445555555555555 9999999999999999965 554 335666 999999999999999999
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 231 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl 231 (485)
++|. | ++++.||+++|+.. +.+ ++..-+..+.=...+-+++.|++.|+|+||||+.+..+++++
T Consensus 107 S~gt----D------k~v~~wD~~tG~~~-----rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 107 SCGT----D------KTVRGWDAETGKRI-----RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred EecC----C------ceEEEEecccceee-----ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 9774 4 69999999999983 332 222322233322234578899999999999999988888888
Q ss_pred cC-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-
Q 011452 232 SD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN- 309 (485)
Q Consensus 232 ~~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t- 309 (485)
.. ..+.+|.|.+.+.-.+++. =|+.||+||+..+.++.++.||.+.|..+..+ +.|..+++-+.|.|+++||++-
T Consensus 172 ~~kyqltAv~f~d~s~qv~sgg--Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDTSDQVISGG--IDNDIKVWDLRKNDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred ccceeEEEEEecccccceeecc--ccCceeeeccccCcceEEeecccCceeeEEec-cCCCccccccccceEEEEEeccc
Confidence 64 5899999997544445543 34789999999999999999999999999886 7899999999999999999983
Q ss_pred ---CeeEEecccCCC----ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 310 ---FELTEVSRTEFM----TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 310 ---g~~~~~l~gh~~----~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
..|+.++.||.. ..-..++||+++.+..++ |+.+-+||.. -.+++-|.||.+. |+.++|.|...+|
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs-----vn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS-----VNEVDFHPTEPII 323 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee-----EEEeeecCCCcEE
Confidence 467889888754 334578999999999999 9999999997 5899999999987 9999999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEE
Q 011452 381 ISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIkl 402 (485)
.|++. |.||.|
T Consensus 324 ls~~s-----------dk~i~l 334 (338)
T KOG0265|consen 324 LSCSS-----------DKTIYL 334 (338)
T ss_pred EEecc-----------CceeEe
Confidence 99986 799877
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.7e-28 Score=239.33 Aligned_cols=230 Identities=14% Similarity=0.190 Sum_probs=195.0
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC---CeEEEEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEec
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSI---SDKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~---g~~l~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi 264 (485)
+...+++|+|.|.-|.+|||||.|++||+|++.. ..|...+ |...|++||+||.+++|+++| .|.|+-||.=
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS--FD~t~~Iw~k 90 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS--FDATVVIWKK 90 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee--ccceEEEeec
Confidence 4455779999843388999999999999999984 4566666 346899999999777777755 5689999986
Q ss_pred CCC--eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC---eeEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 265 EDG--TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 265 ~tG--~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg---~~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
++| +|+.+|+||...|++|+|+ .+|.+|++.+.|+.|=||.+..+ +|..+|.+|+..|.-|+|.|-..+|+|+|
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec
Confidence 654 6899999999999999997 67899999999999999999854 68889999999999999999999999999
Q ss_pred -CCcEEEEeCC----CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 340 -NRTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 340 -D~TIklWd~~----G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
|.|||+|... -+|+++|.+|..- |++++|.|+|+.|+|++. |+||+||-..+ .+
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~T-----VW~~~F~~~G~rl~s~sd-----------D~tv~Iw~~~~-----~~ 228 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENT-----VWSLAFDNIGSRLVSCSD-----------DGTVSIWRLYT-----DL 228 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccce-----EEEEEecCCCceEEEecC-----------CcceEeeeecc-----Cc
Confidence 9999999874 3599999999876 999999999999999986 79999997542 33
Q ss_pred cC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 415 RA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 415 ~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.+ |. +.++.|++. .-.|+||+.|+.|+|..
T Consensus 229 ~~~~s--------------------------------------r~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 229 SGMHS--------------------------------------RALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred chhcc--------------------------------------cceEeeeec--ccceEeccCCCEEEEEE
Confidence 32 21 378889998 45799999999999863
No 55
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.8e-28 Score=259.18 Aligned_cols=258 Identities=12% Similarity=0.152 Sum_probs=190.7
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcc----cceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSS----LRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~st----L~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
.|+...+++|+..+++++ .+|-- ..+...-++.-..|++....+++. +|...+..|+|+|.|+++||+||.
T Consensus 22 ~i~~~~~~~d~~~~~~~n----~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~ 96 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACN----DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASE 96 (493)
T ss_pred ccccccccCCCCCcEeEC----CceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeC
Confidence 355666666655555544 22100 001122233334565543334454 366778899998438999999999
Q ss_pred CCcEEEeecCCCe-------EEEEEc--CCcEEEEEEcCC-ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEE
Q 011452 214 DSIYKVFDLKNYT-------MLYSIS--DKNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283 (485)
Q Consensus 214 D~tiKlWdl~~g~-------~l~tl~--~~~V~~VafSpg-~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V 283 (485)
|++|+|||+.++. ++.++. ...|..|+|+|. ..++++++ .|++|+|||+++|+++.++.+|...+.+|
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs--~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG--ADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe--CCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 9999999997652 455664 458999999984 33444443 45899999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCc-eEEEEEcCCCcEEEEE----e-CCcEEEEeCC--CcEEEE
Q 011452 284 DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMT-PSAFIFLYENQLFLTF----R-NRTVAVWNFR--GELVTS 355 (485)
Q Consensus 284 ~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~-v~avaFspdg~llaS~----s-D~TIklWd~~--G~ll~t 355 (485)
+|+ |++..|++++.|++|+|||+++++++..+.+|... +..+.|.|++.+++++ + |++|+|||++ .+.+.+
T Consensus 175 a~s-pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 175 EWN-LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEE-CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 997 67888889999999999999999999999899764 4467899998888764 3 7899999995 456666
Q ss_pred eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 356 l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+..|.. ..+....|+||+++|++++.. |++|++||+.+++++..+...
T Consensus 254 ~~~d~~----~~~~~~~~d~d~~~L~lggkg----------Dg~Iriwdl~~~~~~~~~~~~ 301 (493)
T PTZ00421 254 VDLDQS----SALFIPFFDEDTNLLYIGSKG----------EGNIRCFELMNERLTFCSSYS 301 (493)
T ss_pred eccCCC----CceEEEEEcCCCCEEEEEEeC----------CCeEEEEEeeCCceEEEeecc
Confidence 554432 126678899999999998752 799999999999988876543
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.8e-27 Score=249.08 Aligned_cols=319 Identities=13% Similarity=0.136 Sum_probs=248.1
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEee--cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLN--VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~--g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l 172 (485)
=|.+|.|+ |..+|+.+.||++-+||=++|+.++.|. .+|.+.|.+|+|+||++.++|+|+| +++||
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD----------kt~KI 261 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD----------KTIKI 261 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC----------ceEEE
Confidence 37778888 9999999999999999999999999986 2489999999999999999999964 59999
Q ss_pred eEeccCCcCcccc------------eeee---------------------------ccccCceEEEEeCCCCeEEEEeeC
Q 011452 173 EYIRRGKPDAGFA------------LFES---------------------------ESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 173 w~i~~G~~~~~~~------------lf~~---------------------------~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
||+.++++...++ ||+. +|.+.+.++.-+ |||++|-|||.
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~Sgsy 340 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYSGSY 340 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc-CCCCEEEeecc
Confidence 9998877632111 2221 244445567776 79999999999
Q ss_pred CCcEEEeecCCCeEEE---EEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE------------------
Q 011452 214 DSIYKVFDLKNYTMLY---SISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS------------------ 272 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~---tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t------------------ 272 (485)
||.|-=||..+|..-. ..|.+.|..++-+..+.+.+.+ .|.++|+-+++.+..-+.
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g---~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG---WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe---cCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 9999999998887432 3466789999988755555553 456899887743222111
Q ss_pred -------------eecCC--------cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE--ecccCCCceEEEEEc
Q 011452 273 -------------FNHLL--------HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE--VSRTEFMTPSAFIFL 329 (485)
Q Consensus 273 -------------l~~~~--------~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~--~l~gh~~~v~avaFs 329 (485)
|+.+. -....|+++ |++...++|++|+.|+|+.+..+++.+ .+..|...|+.|+||
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 11110 012356665 778889999999999999999876543 356799999999999
Q ss_pred CCCcEEEEEe-CCcEEEEeCC-CcEEEE-eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 330 YENQLFLTFR-NRTVAVWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 330 pdg~llaS~s-D~TIklWd~~-G~ll~t-l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
||+.+||++. .+.|-+||++ .+.... +.=|+.. |+.|++|||.+++|+||. |-+|-||++.
T Consensus 497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak-----I~~~aWsP~n~~vATGSl-----------Dt~Viiysv~ 560 (603)
T KOG0318|consen 497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK-----INCVAWSPNNKLVATGSL-----------DTNVIIYSVK 560 (603)
T ss_pred CCCcEEEEeccCCcEEEEEcccCceecceeeeeeee-----EEEEEeCCCceEEEeccc-----------cceEEEEEcc
Confidence 9999999999 9999999996 665433 3338776 999999999999999998 7999999996
Q ss_pred C-CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 407 T-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 407 T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. .+.+....+|. ..|++|.|- |-.+|+|.+.|-.||+|..
T Consensus 561 kP~~~i~iknAH~--------------------------------------~gVn~v~wl-de~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 561 KPAKHIIIKNAHL--------------------------------------GGVNSVAWL-DESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ChhhheEeccccc--------------------------------------cCceeEEEe-cCceEEeccCcceeEEecc
Confidence 4 45555555665 269999995 5578999999999999973
No 57
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=257.96 Aligned_cols=282 Identities=15% Similarity=0.207 Sum_probs=227.3
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
|.+.|..|-|-++.++|++++ .| +.|++|++.-++.+.-..|- +.++.+..++|+ ++++.+.+++.|
T Consensus 174 h~gev~~v~~l~~sdtlatgg----~D------r~Ik~W~v~~~k~~~~~tLa--Gs~g~it~~d~d-~~~~~~iAas~d 240 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGG----SD------RIIKLWNVLGEKSELISTLA--GSLGNITSIDFD-SDNKHVIAASND 240 (459)
T ss_pred cccccceeEEccCcchhhhcc----hh------hhhhhhhcccchhhhhhhhh--ccCCCcceeeec-CCCceEEeecCC
Confidence 888899999999999999955 45 79999998666643212222 245667789998 677777788899
Q ss_pred CcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCE
Q 011452 215 SIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK 292 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ 292 (485)
+++++|++.+++++.||.+ +.|.+++|.-+...++++ +.|.|||+||+..+.|.++.-- ......|... +..
T Consensus 241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg--s~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~---~~~ 314 (459)
T KOG0288|consen 241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG--SADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS---ISD 314 (459)
T ss_pred Cceeeeeccchhhhhhhcccccceeeehhhccccceeec--cccchhhhhhhhhhheeccccc-cccccceEec---cee
Confidence 9999999999999988865 589999999655546664 4569999999999999998752 1344555543 233
Q ss_pred EEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeE
Q 011452 293 LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 370 (485)
Q Consensus 293 lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~s 370 (485)
++++-.|++||.||++++.+......|. .|.++..+++|..|+|++ |.|+++-|++ -+..++|..-... ..+.++.
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k-~asDwtr 392 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK-CASDWTR 392 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-cccccce
Confidence 4455699999999999999999888776 999999999999999999 9999999998 4556666532221 1112578
Q ss_pred EEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccccccc
Q 011452 371 IYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRS 450 (485)
Q Consensus 371 vafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (485)
+.|||||.|+|.||. ||+|+||++.||||...+.....+
T Consensus 393 vvfSpd~~YvaAGS~-----------dgsv~iW~v~tgKlE~~l~~s~s~------------------------------ 431 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSA-----------DGSVYIWSVFTGKLEKVLSLSTSN------------------------------ 431 (459)
T ss_pred eEECCCCceeeeccC-----------CCcEEEEEccCceEEEEeccCCCC------------------------------
Confidence 999999999999987 799999999999999999875421
Q ss_pred chhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 451 TVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 451 ~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..|++++|+|-|..|++++.++.|.+|.
T Consensus 432 ------~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 432 ------AAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ------cceEEEEEcCCCchhhcccCCcceEecC
Confidence 1799999999999999999999999994
No 58
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=1.3e-26 Score=223.49 Aligned_cols=258 Identities=14% Similarity=0.172 Sum_probs=193.2
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI 245 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~ 245 (485)
.++.+|++.+|++.. .|.. ...+..++|+ |||+.| ++++.|++|++||+.+++.+..+. +..+..++|+|++
T Consensus 11 ~~v~~~d~~t~~~~~---~~~~--~~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 11 NTISVIDTATLEVTR---TFPV--GQRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG 84 (300)
T ss_pred CEEEEEECCCCceEE---EEEC--CCCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence 599999998887632 3432 1235679998 788865 677889999999999999887775 3457789999865
Q ss_pred e-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCC-CcEEEEECCCCeeEEecccCCCce
Q 011452 246 M-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN-ENLQILDVRNFELTEVSRTEFMTP 323 (485)
Q Consensus 246 ~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D-~tIkIWDv~tg~~~~~l~gh~~~v 323 (485)
. +++++. .|++|++||+++++++..+..+ .....++|+ |++..+++++.+ ..+.+||..+++++..+... ..+
T Consensus 85 ~~l~~~~~--~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~ 159 (300)
T TIGR03866 85 KILYIANE--DDNLVTVIDIETRKVLAEIPVG-VEPEGMAVS-PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRP 159 (300)
T ss_pred CEEEEEcC--CCCeEEEEECCCCeEEeEeeCC-CCcceEEEC-CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCc
Confidence 5 444432 4579999999999999888742 345678886 678888888765 46788899999887654322 356
Q ss_pred EEEEEcCCCcEEE-EEe-CCcEEEEeCC-CcEEEEeecCCCC-CCCC-CeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 324 SAFIFLYENQLFL-TFR-NRTVAVWNFR-GELVTSFEDHLLW-HPDC-NTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 324 ~avaFspdg~lla-S~s-D~TIklWd~~-G~ll~tl~gH~~~-~~~~-~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
..++|+|||++|+ ++. |++|++||++ ++++.+++.+... ++.+ ....++|+|||++++.+.. .++
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~----------~~~ 229 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG----------PAN 229 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC----------CCC
Confidence 7899999999874 555 9999999996 8888877644211 0111 1246899999998765543 157
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEec-CC
Q 011452 399 SINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN-RH 477 (485)
Q Consensus 399 tIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs-~D 477 (485)
+|.+||+.+++.+..+..+. .+++++|+|||+.|++++ .+
T Consensus 230 ~i~v~d~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVGQ---------------------------------------RVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred eEEEEECCCCcEEEEEEeCC---------------------------------------CcceEEECCCCCEEEEEcCCC
Confidence 89999999999887764322 678899999999999875 69
Q ss_pred CcEEEccC
Q 011452 478 GLVHVWSN 485 (485)
Q Consensus 478 gtVklWd~ 485 (485)
++|++||.
T Consensus 271 ~~i~v~d~ 278 (300)
T TIGR03866 271 NDVSVIDV 278 (300)
T ss_pred CeEEEEEC
Confidence 99999984
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=6.2e-28 Score=260.10 Aligned_cols=278 Identities=14% Similarity=0.122 Sum_probs=232.9
Q ss_pred ccccccceEEEEEec-CEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 91 FLRKRSKIIEIVAAR-DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 91 ~~~~~s~V~~i~~s~-~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
++-||+.|+.+.++. .++...+-.+.+++|++.|++||+|+.- +-+-+..|=|.+.+|+++- .. +.
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~---~y~l~~~Fvpgd~~Iv~G~----k~------Ge 435 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC---GYILASKFVPGDRYIVLGT----KN------GE 435 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc---ccEEEEEecCCCceEEEec----cC------Cc
Confidence 466999999999993 3333333467899999999999999854 3689999999999988744 33 56
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC-----CCeE--EEEE------c-CCc
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-----NYTM--LYSI------S-DKN 235 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~-----~g~~--l~tl------~-~~~ 235 (485)
+.+.|+..+.+....+ .|-+.+|+++-+ ||++.+++||.|.|||+||.+ .|+. ..++ . .+.
T Consensus 436 l~vfdlaS~~l~Eti~----AHdgaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd 510 (888)
T KOG0306|consen 436 LQVFDLASASLVETIR----AHDGAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD 510 (888)
T ss_pred eEEEEeehhhhhhhhh----ccccceeeeeec-CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc
Confidence 7788887777643222 245677899997 799999999999999999964 1322 1222 2 368
Q ss_pred EEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe
Q 011452 236 VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV 315 (485)
Q Consensus 236 V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~ 315 (485)
|.+|++||++++|+.+ --|.|+||+-+.|-+.--+|=||--+|.+++.+ ||...++++|.|++||||-++=|.|.+.
T Consensus 511 vL~v~~Spdgk~LaVs--LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVS--LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred EEEEEEcCCCcEEEEE--eccCeEEEEEecceeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccccchhhhh
Confidence 9999999988887764 356899999999988888888999999999976 7777778889999999999999999999
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
+-+|++.|.+|-|.|+..+|.|++ |+.||-||-+ =+++++|.+|... |+.++.+|+|.+++|+|.
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e-----v~cLav~~~G~~vvs~sh-------- 654 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE-----VWCLAVSPNGSFVVSSSH-------- 654 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe-----eeeeEEcCCCCeEEeccC--------
Confidence 999999999999999999999999 9999999996 8999999999987 999999999999999987
Q ss_pred cCCCCeEEEEeC
Q 011452 394 EGNAGSINISNI 405 (485)
Q Consensus 394 ~~~DgtIklWdl 405 (485)
|.+||+|.-
T Consensus 655 ---D~sIRlwE~ 663 (888)
T KOG0306|consen 655 ---DKSIRLWER 663 (888)
T ss_pred ---CceeEeeec
Confidence 799999983
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.3e-29 Score=243.04 Aligned_cols=276 Identities=13% Similarity=0.195 Sum_probs=233.6
Q ss_pred cccceEEEEEe-----cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 94 KRSKIIEIVAA-----RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 94 ~~s~V~~i~~s-----~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
|.-||.+++|+ |=+|+|++.||.--|-+-+||--|-|+.| |.+.||+-.+++|.-.-|++++ | -
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l~~na~~aasaaa----d------f 81 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATLNKNATRAASAAA----D------F 81 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeecCchhhhhhhhcc----c------c
Confidence 45568888888 88999999999999999999999999998 9999999999999887777665 4 4
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEE
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLL 248 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll 248 (485)
+.++|+..+|... .-|++.| -+..|+|+ .|..+|.+|++++.+||+|++..+
T Consensus 82 takvw~a~tgdel---hsf~hkh--ivk~~af~-~ds~~lltgg~ekllrvfdln~p~---------------------- 133 (334)
T KOG0278|consen 82 TAKVWDAVTGDEL---HSFEHKH--IVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPK---------------------- 133 (334)
T ss_pred hhhhhhhhhhhhh---hhhhhhh--eeeeEEec-ccchhhhccchHHHhhhhhccCCC----------------------
Confidence 7889999999862 2455433 35689998 799999999999999999986411
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
...+.+.+|.+.++.|-|. ..+..+|++.+|+||||||.+||...+++. -.+.|.++-.
T Consensus 134 -------------------App~E~~ghtg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEv 192 (334)
T KOG0278|consen 134 -------------------APPKEISGHTGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEV 192 (334)
T ss_pred -------------------CCchhhcCCCCcceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceee
Confidence 1345567788888888886 346788888999999999999999999885 3458999999
Q ss_pred cCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 329 LYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 329 spdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
++||++|..+--++|+.||.. =+++++++- + |+|.+..++|+-..++.|.. |..+.-+|..|
T Consensus 193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k~---P---~nV~SASL~P~k~~fVaGge-----------d~~~~kfDy~T 255 (334)
T KOG0278|consen 193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYKM---P---CNVESASLHPKKEFFVAGGE-----------DFKVYKFDYNT 255 (334)
T ss_pred ccCCCEEEEecCceeEEeccccccceeeccC---c---cccccccccCCCceEEecCc-----------ceEEEEEeccC
Confidence 999998888778999999995 667776643 2 66999999999999998875 89999999999
Q ss_pred CeEEEEe-cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 408 GKCLAKI-RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 408 Gk~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|+.+..+ +||-+ +|.+|.|||||...||||+|||||||.
T Consensus 256 geEi~~~nkgh~g--------------------------------------pVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 256 GEEIGSYNKGHFG--------------------------------------PVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred CceeeecccCCCC--------------------------------------ceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999886 78762 999999999999999999999999996
No 61
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.7e-27 Score=259.22 Aligned_cols=228 Identities=11% Similarity=0.096 Sum_probs=178.8
Q ss_pred eeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCC-ceEEEEEcCCCCeeEEEEecCCCe--------EEEEeecCCcc
Q 011452 211 SAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGT--------VLKSFNHLLHR 279 (485)
Q Consensus 211 ~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg-~~ll~sss~~~D~tIklWdi~tG~--------~L~tl~~~~~~ 279 (485)
|+.+++|+||++.....+.++.+ ..|.+|+|+|. +.++++++ .|++|+|||+.++. ++.++.+|...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS--~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGS--EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 67899999999877777777764 58999999984 44555544 45899999998753 35578899999
Q ss_pred eeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 280 NKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 280 ~~~V~f~~~~~~~l-ls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
+..|+|+ |++..+ ++++.|++|+|||+++++.+..+. |...|.+++|+|+|++|++++ |++|+|||++ |+++.++
T Consensus 128 V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 128 ISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 9999997 556655 567899999999999998877775 567899999999999999999 9999999996 9999999
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
.+|........++...|+||+++|+|++.+ ..++++|+|||+.+ ++++.++..+..
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d-------~~~~R~VkLWDlr~~~~pl~~~~ld~~---------------- 262 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFS-------KNNMREMKLWDLKNTTSALVTMSIDNA---------------- 262 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcC-------CCCccEEEEEECCCCCCceEEEEecCC----------------
Confidence 999864111113444578999999998863 11236899999984 788877754431
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. ..+......++|..+++|+.|++||+|+.
T Consensus 263 ----------~----------~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 263 ----------S----------APLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred ----------c----------cceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 0 14444555667999999999999999974
No 62
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.5e-26 Score=251.79 Aligned_cols=255 Identities=12% Similarity=0.080 Sum_probs=190.1
Q ss_pred EeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeC-CCEEEEEEeecCCCCcccceeEEEEeEeccCCcC-cc----c
Q 011452 111 LAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN-NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD-AG----F 184 (485)
Q Consensus 111 ~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spd-g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~-~~----~ 184 (485)
|+.+++++||+..+...+.++.+ |...|.+|+|+|+ ++.|||+|. | ++++||+++.+... .. .
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS~----D------gtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGSE----D------LTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEeC----C------CeEEEEECCCCCccccccccce
Confidence 66789999999888888888887 8889999999997 789999774 4 59999999765321 00 0
Q ss_pred ceeeeccccCceEEEEeCCCCeE-EEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEE
Q 011452 185 ALFESESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~-Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklW 262 (485)
..+. .|...+..|+|+ |++.. ||+++.|++|+|||+.+++.++++. ...|.+++|+|++.++++++ .|++|+||
T Consensus 119 ~~L~-gH~~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s--~D~~IrIw 194 (568)
T PTZ00420 119 CILK-GHKKKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC--VGKHMHII 194 (568)
T ss_pred EEee-cCCCcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe--cCCEEEEE
Confidence 1122 345667799998 67764 6899999999999999999887774 46799999999777776654 45899999
Q ss_pred ecCCCeEEEEeecCCcceeEEEEE----ecCCCEEEEEeCCC----cEEEEECCC-CeeEEecc--cCCCceEEEEEcCC
Q 011452 263 SIEDGTVLKSFNHLLHRNKKVDFI----EQFNEKLLVKQENE----NLQILDVRN-FELTEVSR--TEFMTPSAFIFLYE 331 (485)
Q Consensus 263 di~tG~~L~tl~~~~~~~~~V~f~----~~~~~~lls~s~D~----tIkIWDv~t-g~~~~~l~--gh~~~v~avaFspd 331 (485)
|+.+|+++.++.+|.+.+....+. .++++.|++++.|+ +|+|||+++ ++++.+.. .+...+..+.++++
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t 274 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST 274 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC
Confidence 999999999999998765433221 26778899987664 899999995 66666543 23334444556778
Q ss_pred CcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 332 NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 332 g~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
|.+|++|+ |++|++|++. +. +..|...... ..+.+++|.|+.-+=+.-|
T Consensus 275 g~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~---~p~~g~~f~Pkr~~dv~~c 325 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSC---SPFRSFGFLPKQICDVYKC 325 (568)
T ss_pred CCEEEEEECCCeEEEEEccCCc-EEeecccccC---CCccceEEccccccCchhh
Confidence 99999999 9999999996 54 3434322211 1268999999865444444
No 63
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-26 Score=231.34 Aligned_cols=246 Identities=15% Similarity=0.215 Sum_probs=202.6
Q ss_pred eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEec
Q 011452 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi 264 (485)
|.. ....+.+++|+ ++|+.|+++++|.+++|+|..+|+.+.++.. ..|.-+.|......++.++...|.|||..++
T Consensus 10 f~~-~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 10 FRE-TNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred ccc-CCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 443 34567899998 7999999999999999999999999999975 4899999995444555666667899999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcE
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 343 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TI 343 (485)
.+-+.|+.|.||...|.++.-+ |-++..++++.|+|||+||++..+|+-.+. ......+||.|+|-+||.+. ...|
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred ecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCCCcEEEEecCCCeE
Confidence 9999999999999999999986 567999999999999999999999877763 33455688999999999999 5599
Q ss_pred EEEeCC---CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011452 344 AVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGL 420 (485)
Q Consensus 344 klWd~~---G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~ 420 (485)
||+|++ ...-.+|.=... ..+..+.|.|||||++|+-+.. .+-|.|-|.-+|..+.++.+|.+.
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~--~~~ew~~l~FS~dGK~iLlsT~-----------~s~~~~lDAf~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDN--DEAEWTDLEFSPDGKSILLSTN-----------ASFIYLLDAFDGTVKSTFSGYPNA 231 (311)
T ss_pred EEEEecccCCCCceeEccCCC--CccceeeeEEcCCCCEEEEEeC-----------CCcEEEEEccCCcEeeeEeeccCC
Confidence 999984 345555532211 1133589999999999998775 688999999999999999998741
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+ .. -+.+|+|||+.+.+|+.||+|++|+.
T Consensus 232 -------------------------~~---------~~-~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 232 -------------------------GN---------LP-LSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred -------------------------CC---------cc-eeEEECCCCcEEEEecCCCcEEEEEc
Confidence 00 12 35789999999999999999999974
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=245.95 Aligned_cols=286 Identities=17% Similarity=0.216 Sum_probs=224.3
Q ss_pred EEeeecccCcEEEEeecCCcccEEEEEEeeCC--CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccC
Q 011452 117 CAAFCRETNQRICFLNVTADEVIRSLFYNKNN--DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW 194 (485)
Q Consensus 117 iklW~~~tG~~l~tl~g~~~~~i~sv~~spdg--~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~ 194 (485)
.+-|+..+--.+. ..|+ .|.+|.|||.- +..++.| -.+.|.+...-.....+.-|. .-
T Consensus 11 ~~~w~~~~~~~~~---ke~~-~vssl~fsp~~P~d~aVt~S------------~rvqly~~~~~~~~k~~srFk----~~ 70 (487)
T KOG0310|consen 11 IRYWRQETFPPVH---KEHN-SVSSLCFSPKHPYDFAVTSS------------VRVQLYSSVTRSVRKTFSRFK----DV 70 (487)
T ss_pred chhhhhhcccccc---cccC-cceeEecCCCCCCceEEecc------------cEEEEEecchhhhhhhHHhhc----cc
Confidence 3456655333222 2244 79999999943 2223433 356676654433322122232 23
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
+.++.|- .||++||.|...|.|||+|.++-..|..+ |+.+|..+.|+| ++++++++ ++|+.+|+||+.++.+..
T Consensus 71 v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~--sDd~v~k~~d~s~a~v~~ 147 (487)
T KOG0310|consen 71 VYSVDFR-SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG--SDDKVVKYWDLSTAYVQA 147 (487)
T ss_pred eeEEEee-cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec--CCCceEEEEEcCCcEEEE
Confidence 4589997 69999999999999999997764455555 467999999998 77777665 456999999999999977
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR- 349 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~- 349 (485)
.+.+|.+.|.+.++++..+..+++||+||+||+||.++. ..+..+ .|..+|..+.|.|.|+++||++...||+||+.
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~ 226 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTT 226 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecC
Confidence 999999999999999765667777899999999999987 555555 58889999999999999999998899999995
Q ss_pred -CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccc
Q 011452 350 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSC 428 (485)
Q Consensus 350 -G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~ 428 (485)
|+++..+..|.-. |.++.+..|++.|+|++- |+-||++|+.+-|.+..+.=.
T Consensus 227 G~qll~~~~~H~Kt-----VTcL~l~s~~~rLlS~sL-----------D~~VKVfd~t~~Kvv~s~~~~----------- 279 (487)
T KOG0310|consen 227 GGQLLTSMFNHNKT-----VTCLRLASDSTRLLSGSL-----------DRHVKVFDTTNYKVVHSWKYP----------- 279 (487)
T ss_pred Cceehhhhhcccce-----EEEEEeecCCceEeeccc-----------ccceEEEEccceEEEEeeecc-----------
Confidence 6788888878765 999999999999999997 799999998877887776542
Q ss_pred CCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEE
Q 011452 429 SGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVH 481 (485)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVk 481 (485)
.+|-+++.+||++.+|-|-.||.|-
T Consensus 280 ----------------------------~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 280 ----------------------------GPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ----------------------------cceeeEEecCCCceEEEecccceee
Confidence 2899999999999999999999874
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.1e-27 Score=230.44 Aligned_cols=280 Identities=14% Similarity=0.134 Sum_probs=214.4
Q ss_pred EEEEEeeCCC-E--EEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCC
Q 011452 140 RSLFYNKNND-S--LITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDS 215 (485)
Q Consensus 140 ~sv~~spdg~-~--Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~ 215 (485)
+||-|||.=+ . +|++..||-.+ ++.+-|-++.+++- ...+.+ +...-...|++++....+++.++.||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G-----~G~L~ile~~~~~g---i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDG 83 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAG-----NGRLFILEVTDPKG---IQECQSYDTEDGLFDVAWSENHENQVIAASGDG 83 (311)
T ss_pred ceeEecccccchhheeehhhccccc-----CceEEEEecCCCCC---eEEEEeeecccceeEeeecCCCcceEEEEecCc
Confidence 7899999732 2 34444343222 35566666543332 233333 11122346899876667778888899
Q ss_pred cEEEeecCCC-eEEEEEc--CCcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 216 IYKVFDLKNY-TMLYSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 216 tiKlWdl~~g-~~l~tl~--~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
++||||+.-. ..+..++ ..+|.+|.+++ ...++++ +-|+|||||+..-++-++||+||...|..++|+|-.+
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP 160 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee---ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC
Confidence 9999996532 3566664 35899999996 4445544 4669999999999999999999999999999998778
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEc-CCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCC
Q 011452 291 EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 291 ~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs-pdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~ 366 (485)
..+++.|.|+++||||++..-....+..|...+.+.-|+ ++-..|+|++ |++||.||++ ...+..|.||...
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A---- 236 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA---- 236 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE----
Confidence 888889999999999999643333377899899999997 6788899999 9999999996 7789999999988
Q ss_pred CeeEEEECCC-CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC-eEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 367 NTNNIYITSD-QDLIISYCKADSDDPLAEGNAGSINISNILTG-KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 367 ~v~svafSpD-G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG-k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
|+.|.|||. -.+|||+|. |=|+||||.+.+ -|+.+..-|+
T Consensus 237 -VRkvk~Sph~~~lLaSasY-----------DmT~riw~~~~~ds~~e~~~~Ht-------------------------- 278 (311)
T KOG0277|consen 237 -VRKVKFSPHHASLLASASY-----------DMTVRIWDPERQDSAIETVDHHT-------------------------- 278 (311)
T ss_pred -EEEEecCcchhhHhhhccc-----------cceEEecccccchhhhhhhhccc--------------------------
Confidence 999999996 478999987 799999998744 3555555554
Q ss_pred ccccccchhcccCCeEEEEEcC-CCCEEEEecCCCcEEEcc
Q 011452 445 ASRIRSTVAEALEDITALFYDE-DRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fsp-Dg~~LaSgs~DgtVklWd 484 (485)
+.|..+.||+ +...+|+.+.|+++.||+
T Consensus 279 ------------EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 ------------EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ------------eEEeccccccccCceeeecccccceeeec
Confidence 4888888888 567899999999999997
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=222.93 Aligned_cols=277 Identities=12% Similarity=0.180 Sum_probs=227.1
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
+..+|..+.|. |.+.++.+.|.|+||||...|-+|+|-.+ |..-|..++.+.|+-.+++++ .| +.+.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~G----gD------k~v~ 84 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCG----GD------KAVQ 84 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccccCC----CC------ceEE
Confidence 67889999998 99999999999999999999999999988 777799999999999998855 45 7999
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFT 251 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~ss 251 (485)
+||+.+||.+. -|. +|...+..|.|. .+..+++|||.|.++|+||-.+-.
T Consensus 85 vwDV~TGkv~R---r~r-gH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~s------------------------- 134 (307)
T KOG0316|consen 85 VWDVNTGKVDR---RFR-GHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSRS------------------------- 134 (307)
T ss_pred EEEcccCeeee---ecc-cccceeeEEEec-CcceEEEeccccceeEEEEcccCC-------------------------
Confidence 99999999853 344 367778899997 588999999999999999964311
Q ss_pred cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC
Q 011452 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE 331 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd 331 (485)
-.||++.| .....+.+|... +..+++||.|||+|.+|++.|++..-.-|| +|+++.||+|
T Consensus 135 ----~ePiQild-----------ea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d 194 (307)
T KOG0316|consen 135 ----FEPIQILD-----------EAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKD 194 (307)
T ss_pred ----CCccchhh-----------hhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCC
Confidence 02333333 223566666653 456778899999999999999988777676 6999999999
Q ss_pred CcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 332 NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 332 g~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
|+..+.++ |.|++|-|-+ ||+++++.||....+ -...+|+..-..++|||. ||.|.+||+..+.
T Consensus 195 ~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey---kldc~l~qsdthV~sgSE-----------DG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 195 GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY---KLDCCLNQSDTHVFSGSE-----------DGKVYFWDLVDET 260 (307)
T ss_pred CCEEEEeeccceeeecccchhHHHHHhccccccee---eeeeeecccceeEEeccC-----------CceEEEEEeccce
Confidence 99999999 9999999996 999999999987522 234567777788899886 8999999999999
Q ss_pred EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 410 CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 410 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
.+.+++.|.. --|++|+|.|--..+.++.. +.+.+|
T Consensus 261 ~~sk~~~~~~-------------------------------------v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 261 QISKLSVVST-------------------------------------VIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred eeeeeccCCc-------------------------------------eeEEeeecccCccceeEecC-Cceece
Confidence 9999988762 14899999998888877753 334455
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.3e-27 Score=238.35 Aligned_cols=304 Identities=10% Similarity=0.073 Sum_probs=232.8
Q ss_pred hhhccccccccccCCCCcccccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcE---EEEeecCCcccEEE
Q 011452 67 FRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQR---ICFLNVTADEVIRS 141 (485)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~---l~tl~g~~~~~i~s 141 (485)
|.++-|-..+.+++....+.-.--+--|..+|+=+.|| |.+|||+|.|.|+-+|.+.--.. ..|+.+ |...|--
T Consensus 196 ldsvsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~y 274 (519)
T KOG0293|consen 196 LDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSY 274 (519)
T ss_pred cchhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEE
Confidence 33344444444444444332222223378899999999 99999999999999999765444 778888 7778999
Q ss_pred EEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEee
Q 011452 142 LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 221 (485)
Q Consensus 142 v~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWd 221 (485)
|.||||..+|++++.+ ..+++||+.+|.+ +.++.+.+-..+-++++- |||+.+++||.|+++--||
T Consensus 275 i~wSPDdryLlaCg~~----------e~~~lwDv~tgd~---~~~y~~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFD----------EVLSLWDVDTGDL---RHLYPSGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred EEECCCCCeEEecCch----------HheeeccCCcchh---hhhcccCcCCCcceeEEc-cCCceeEecCCCCcEEEec
Confidence 9999999999997742 3589999999998 446665433455678896 8999999999999999999
Q ss_pred cCCCeEEEEEcCC---cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeC
Q 011452 222 LKNYTMLYSISDK---NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE 298 (485)
Q Consensus 222 l~~g~~l~tl~~~---~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~ 298 (485)
+ +|+.+....+- .|+++|+++||+.+.... .|..|++.+.++-.+......+ +.+.+...+ -++...++.=.
T Consensus 341 l-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~--~d~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL~ 415 (519)
T KOG0293|consen 341 L-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVT--VDKKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNLQ 415 (519)
T ss_pred C-CcchhhcccccccceeEEEEEcCCCcEEEEEe--cccceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEcc
Confidence 7 56777777754 499999998666655543 4589999999987776555433 567777765 44555555569
Q ss_pred CCcEEEEECCCCeeEEecccCCCceE--EEEEcC-CCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEE
Q 011452 299 NENLQILDVRNFELTEVSRTEFMTPS--AFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 373 (485)
Q Consensus 299 D~tIkIWDv~tg~~~~~l~gh~~~v~--avaFsp-dg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svaf 373 (485)
+.+|++||++...+++...||...-. .-+|-. +..++|||| |+.|.||+.. |+++..|.||..- ||.|++
T Consensus 416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~-----vNcVsw 490 (519)
T KOG0293|consen 416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT-----VNCVSW 490 (519)
T ss_pred cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce-----eeEEec
Confidence 99999999998888777778865322 234654 448899999 9999999995 9999999999965 999999
Q ss_pred CC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 374 TS-DQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 374 Sp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
+| |-..+||||+ |||||||-..
T Consensus 491 NP~~p~m~ASasD-----------DgtIRIWg~~ 513 (519)
T KOG0293|consen 491 NPADPEMFASASD-----------DGTIRIWGPS 513 (519)
T ss_pred CCCCHHHhhccCC-----------CCeEEEecCC
Confidence 99 5577889886 8999999753
No 68
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.5e-27 Score=242.48 Aligned_cols=274 Identities=13% Similarity=0.118 Sum_probs=219.2
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
|+.+|-.|.|- .++||+++.|..|++|+...++ ++.+|-| ....|.++.|.++|..++.+|. | ..
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~~~iAas~----d------~~ 242 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNKHVIAASN----D------KN 242 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCceEEeecC----C------Cc
Confidence 44444444444 6999999999999999988666 6778877 5668999999999999988663 4 58
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEE
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLL 248 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll 248 (485)
.+||++-.+++.. .+. +|..-+..+.|.- ..-.+++|+.|.|||+||+....|..++. +..+.+|..++ ...
T Consensus 243 ~r~Wnvd~~r~~~---TLs-GHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~--~~~ 315 (459)
T KOG0288|consen 243 LRLWNVDSLRLRH---TLS-GHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI--SDV 315 (459)
T ss_pred eeeeeccchhhhh---hhc-ccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEecc--eee
Confidence 9999998777632 222 2444455677752 22338999999999999999999998874 67888888873 333
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC----CceE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF----MTPS 324 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~----~~v~ 324 (485)
+| +..|++||.||+.++.+..+...+ +.+.+|+.+ +++-.+++++.|.|+++.|+++.+..+++.... ...+
T Consensus 316 ~S--gH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 316 IS--GHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred ee--cccccceEEEeccCCceeeEeecC-cceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence 33 467799999999999999999875 589999986 677888889999999999999999988875421 2378
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
.+.||||+.++|+|| ||.|+||++. |+|...+...... ..|.+++|+|-|..|++++. ++.+.|
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk-----------~~~v~l 457 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADK-----------QKAVTL 457 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC---cceEEEEEcCCCchhhcccC-----------CcceEe
Confidence 899999999999999 9999999995 9998877654321 12899999999999999987 799999
Q ss_pred E
Q 011452 403 S 403 (485)
Q Consensus 403 W 403 (485)
|
T Consensus 458 W 458 (459)
T KOG0288|consen 458 W 458 (459)
T ss_pred c
Confidence 9
No 69
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2.2e-26 Score=246.69 Aligned_cols=279 Identities=14% Similarity=0.210 Sum_probs=217.3
Q ss_pred hccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEE--eecCCcccEEE-EEEe
Q 011452 69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICF--LNVTADEVIRS-LFYN 145 (485)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~t--l~g~~~~~i~s-v~~s 145 (485)
.++|.++...|+.-+--++..+ +-.|+++|+|||+|+|+-..++.+-+ +.+ |.+.|.. +.|-
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~--------------~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTD--------------GVCIISGSRDGTVKVWAKKGKQYLETHAFEG-PKGFIANSICYA 67 (745)
T ss_pred cceeEEEeccCccchheeEecC--------------CeEEeecCCCCceeeeeccCcccccceeccc-Ccceeeccceec
Confidence 4666777777766543333222 46799999999999999775665553 344 6667766 8886
Q ss_pred e-CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC
Q 011452 146 K-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 224 (485)
Q Consensus 146 p-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~ 224 (485)
+ ++-.|.+++ -| .++-+|..-.+.+. ..|+++ ..-+-+++.. .++. |+|||.|.|+|||- .
T Consensus 68 e~~~~~l~~g~----~D------~~i~v~~~~~~~P~--~~LkgH--~snVC~ls~~-~~~~-~iSgSWD~TakvW~--~ 129 (745)
T KOG0301|consen 68 ESDKGRLVVGG----MD------TTIIVFKLSQAEPL--YTLKGH--KSNVCSLSIG-EDGT-LISGSWDSTAKVWR--I 129 (745)
T ss_pred cccCcceEeec----cc------ceEEEEecCCCCch--hhhhcc--ccceeeeecC-CcCc-eEecccccceEEec--c
Confidence 4 555577755 44 57778886555552 234444 3445567654 4565 89999999999996 6
Q ss_pred CeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcE
Q 011452 225 YTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENL 302 (485)
Q Consensus 225 g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tI 302 (485)
++|.+++.+| .||+|++=|.+.++++ +.|++||||. .|+++++|.||++-|+.+++.+ +..+++++.|+.|
T Consensus 130 ~~l~~~l~gH~asVWAv~~l~e~~~vTg---saDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~I 202 (745)
T KOG0301|consen 130 GELVYSLQGHTASVWAVASLPENTYVTG---SADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSI 202 (745)
T ss_pred hhhhcccCCcchheeeeeecCCCcEEec---cCcceeeecc--CCchhhhhccchhheeeeEEec--CCCeEeecCCceE
Confidence 7888888765 7999999998877655 4569999998 5899999999999999999973 5689999999999
Q ss_pred EEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEE
Q 011452 303 QILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 303 kIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~La 381 (485)
|+||+ +|+++....||+..|+++...+++++++|++ |+|++||+.. +|++.++=- ...||++.+-++|++++
T Consensus 203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lP-----ttsiWsa~~L~NgDIvv 275 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLP-----TTSIWSAKVLLNGDIVV 275 (745)
T ss_pred EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecC-----ccceEEEEEeeCCCEEE
Confidence 99999 7999999999999999999888999999999 9999999977 888877622 22389999999999777
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 382 SYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
-+| ||-||||...
T Consensus 276 g~S------------DG~VrVfT~~ 288 (745)
T KOG0301|consen 276 GGS------------DGRVRVFTVD 288 (745)
T ss_pred ecc------------CceEEEEEec
Confidence 655 7999999865
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.1e-26 Score=233.91 Aligned_cols=253 Identities=14% Similarity=0.179 Sum_probs=198.1
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CC
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PG 244 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafS-pg 244 (485)
..+.|+|++.=.+-+...-|. |-.|+.+|.-. ++.|.+|+.||++||||+ .|++.+++. ...|.+++.- ++
T Consensus 83 ~~leIEYv~~~~aP~pl~~~~--hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n 156 (423)
T KOG0313|consen 83 EILEIEYVEAITAPKPLQCFL--HDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKN 156 (423)
T ss_pred heeEEEEEEecCCCCcccccc--chhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecC
Confidence 377888874322211111222 34577777653 688999999999999997 567666664 5678876665 43
Q ss_pred ce--EEEEEcCCCCeeEEEEecCCCeEE----EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC---------
Q 011452 245 IM--LLIFTKASGHVPLKILSIEDGTVL----KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--------- 309 (485)
Q Consensus 245 ~~--ll~sss~~~D~tIklWdi~tG~~L----~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t--------- 309 (485)
.. +++++ +.|+|++||-++-|+.. +.-+||-..|.+|+-. +++.+++++|+|.+|+||+..+
T Consensus 157 ~~~~~fvsa--s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 157 SSSCLFVSA--SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred CccceEEEe--cCCceEEEEEecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCCCcccccccc
Confidence 33 33333 56799999999888753 3345898899999865 6788999999999999999332
Q ss_pred ----------------CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEE
Q 011452 310 ----------------FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 371 (485)
Q Consensus 310 ----------------g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~sv 371 (485)
+.++-++.||...|.+|.|++ ...+.|+| |.|||.||+. |.++.++.+... .++|
T Consensus 234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks------l~~i 306 (423)
T KOG0313|consen 234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS------LNCI 306 (423)
T ss_pred chhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc------eeEe
Confidence 235677899999999999999 56677888 9999999996 999999987653 6899
Q ss_pred EECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe---EEEEecCCCCCCCCcccccCCCCCCCCcccccccccccc
Q 011452 372 YITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK---CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRI 448 (485)
Q Consensus 372 afSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk---~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
..+|.-++||+||. |.-|||||-.+|. ..++|.||++
T Consensus 307 ~~~~~~~Ll~~gss-----------dr~irl~DPR~~~gs~v~~s~~gH~n----------------------------- 346 (423)
T KOG0313|consen 307 SYSPLSKLLASGSS-----------DRHIRLWDPRTGDGSVVSQSLIGHKN----------------------------- 346 (423)
T ss_pred ecccccceeeecCC-----------CCceeecCCCCCCCceeEEeeecchh-----------------------------
Confidence 99999999999987 7999999998864 4578999984
Q ss_pred ccchhcccCCeEEEEEcCCCC-EEEEecCCCcEEEccC
Q 011452 449 RSTVAEALEDITALFYDEDRN-EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 449 ~~~~~~~l~~V~sl~fspDg~-~LaSgs~DgtVklWd~ 485 (485)
+|.+|.++|... +|+|||.|+++||||.
T Consensus 347 ---------wVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 347 ---------WVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ---------hhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 999999999775 5999999999999984
No 71
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=7.9e-26 Score=228.83 Aligned_cols=292 Identities=15% Similarity=0.109 Sum_probs=234.2
Q ss_pred cccccCCCCcccccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEE
Q 011452 75 EYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~La 152 (485)
.+++++.+.. .-++ -|..+|.++.|+ |.+||+|.-+|.+++|...+|..-+.+-. .-+-|-=+++.|-+..|+
T Consensus 90 lW~~~~ge~~--~elt--gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~ill 164 (399)
T KOG0296|consen 90 LWDISTGEFA--GELT--GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAHILL 164 (399)
T ss_pred EEEccCCcce--eEec--CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEecccccEEE
Confidence 4566666521 1123 388899999999 99999999999999999999999988864 333466789999999998
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~ 232 (485)
.++. | ..+-.|.|..+.. .++|.. +......=+|. |+||.++++..|+||++||+++|+.++.+.
T Consensus 165 AG~~----D------GsvWmw~ip~~~~---~kv~~G-h~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 165 AGST----D------GSVWMWQIPSQAL---CKVMSG-HNSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred eecC----C------CcEEEEECCCcce---eeEecC-CCCCccccccc-CCCceEEEEecCceEEEEecCCCceeEEec
Confidence 7664 4 5889999987433 245553 33333345787 789999999999999999999999999987
Q ss_pred C---CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee--------cCCcceeEEEEEecCCC--EEEEEeCC
Q 011452 233 D---KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN--------HLLHRNKKVDFIEQFNE--KLLVKQEN 299 (485)
Q Consensus 233 ~---~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~--------~~~~~~~~V~f~~~~~~--~lls~s~D 299 (485)
+ ..-..+.++-.+.+++.++ .++.+++-+..+|+++..++ .+.+.+.+|.|++..-. ..++|+-|
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~~g~--~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 230 QAEGLELPCISLNLAGSTLTKGN--SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD 307 (399)
T ss_pred ccccCcCCccccccccceeEecc--CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence 3 3567788886666666644 45899999999999999888 45556668888643221 23446899
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCC
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG 377 (485)
|+|-|||+.+..++... .|...|..+.|.+ -.+|++++ ||+|++||.+ |+|+.++.||+.. |..++++||+
T Consensus 308 G~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-----Il~f~ls~~~ 380 (399)
T KOG0296|consen 308 GTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-----ILDFALSPQK 380 (399)
T ss_pred ceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-----eeEEEEcCCC
Confidence 99999999998888777 4777899999999 66677777 9999999997 9999999999988 9999999999
Q ss_pred CEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 378 DLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 378 ~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
++++++|. |++.+|+++.
T Consensus 381 ~~vvT~s~-----------D~~a~VF~v~ 398 (399)
T KOG0296|consen 381 RLVVTVSD-----------DNTALVFEVP 398 (399)
T ss_pred cEEEEecC-----------CCeEEEEecC
Confidence 99999996 7999999864
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=2.9e-27 Score=236.62 Aligned_cols=278 Identities=13% Similarity=0.133 Sum_probs=233.0
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeec-------CCcccEEEEEEeeCCCEEEEEEeecCCCCcc
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNV-------TADEVIRSLFYNKNNDSLITVSVYASDNFSS 164 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g-------~~~~~i~sv~~spdg~~Las~S~d~~~d~st 164 (485)
+.|-|.+..|+ ||+|+++|.||-+.+||--+|+.-+.|.- -++..|.++.||.|.++||++|. |
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq----D--- 284 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ----D--- 284 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc----C---
Confidence 45667777777 99999999999999999999997554421 15678999999999999999775 4
Q ss_pred cceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEc
Q 011452 165 LRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS 242 (485)
Q Consensus 165 L~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafS 242 (485)
+.|++|.|++|++. .-|...|.+-+.++.|| .|+..+.|+|.|.|+||--+++|+|+..+.++ .|+++.|+
T Consensus 285 ---GkIKvWri~tG~Cl---RrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 285 ---GKIKVWRIETGQCL---RRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred ---CcEEEEEEecchHH---HHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 58999999999994 34655566667799998 67888889999999999999999999988764 79999999
Q ss_pred CCceEEEEEcCCCCeeEEEEecCCCeEEEEeec--CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc--
Q 011452 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT-- 318 (485)
Q Consensus 243 pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~--~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g-- 318 (485)
++|..+++++ .|+|||+|+..|++|+.||+- ..-.+.+|-..|-..+.++++...+||-|-+++ |+..+.+..
T Consensus 358 ~dG~~iisaS--sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk 434 (508)
T KOG0275|consen 358 DDGHHIISAS--SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK 434 (508)
T ss_pred CCCCeEEEec--CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC
Confidence 8777777755 458999999999999999983 234567888777778999999999999999998 777776632
Q ss_pred -CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 319 -EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 319 -h~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
+.+..-+.+.||-|..+-..+ |+.+--+.+. |++-++|.-|.-- |-.++-.|.+.+||||+.
T Consensus 435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd-----vIGl~HHPHqNllAsYsE---------- 499 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD-----VIGLTHHPHQNLLASYSE---------- 499 (508)
T ss_pred ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc-----ccccccCcccchhhhhcc----------
Confidence 344555667999999999888 9998888884 9999999999866 889999999999999997
Q ss_pred CCCeEEEEe
Q 011452 396 NAGSINISN 404 (485)
Q Consensus 396 ~DgtIklWd 404 (485)
||++|||.
T Consensus 500 -DgllKLWk 507 (508)
T KOG0275|consen 500 -DGLLKLWK 507 (508)
T ss_pred -cchhhhcC
Confidence 79999994
No 73
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.9e-26 Score=241.20 Aligned_cols=269 Identities=14% Similarity=0.122 Sum_probs=226.8
Q ss_pred EEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEee
Q 011452 142 LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 221 (485)
Q Consensus 142 v~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWd 221 (485)
+.+|..| .||.+.. ..+.||+-.+|+. ..|+..+ ...+.+|.++ ++|.+||.|-.+++|.|||
T Consensus 183 ldWss~n-~laValg-----------~~vylW~~~s~~v---~~l~~~~-~~~vtSv~ws-~~G~~LavG~~~g~v~iwD 245 (484)
T KOG0305|consen 183 LDWSSAN-VLAVALG-----------QSVYLWSASSGSV---TELCSFG-EELVTSVKWS-PDGSHLAVGTSDGTVQIWD 245 (484)
T ss_pred hhcccCC-eEEEEec-----------ceEEEEecCCCce---EEeEecC-CCceEEEEEC-CCCCEEEEeecCCeEEEEe
Confidence 3456444 5666552 6899999988886 3466653 3567799998 7999999999999999999
Q ss_pred cCCCeEEEEEcC---CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE-eecCCcceeEEEEEecCCCEEEEEe
Q 011452 222 LKNYTMLYSISD---KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS-FNHLLHRNKKVDFIEQFNEKLLVKQ 297 (485)
Q Consensus 222 l~~g~~l~tl~~---~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t-l~~~~~~~~~V~f~~~~~~~lls~s 297 (485)
.++.+.+.++.. ..|-++++.. ..++++ +.|+.|..+|+..++.+.. +.+|...|-.+.|+ +|+.++++|+
T Consensus 246 ~~~~k~~~~~~~~h~~rvg~laW~~--~~lssG--sr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lASGg 320 (484)
T KOG0305|consen 246 VKEQKKTRTLRGSHASRVGSLAWNS--SVLSSG--SRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLASGG 320 (484)
T ss_pred hhhccccccccCCcCceeEEEeccC--ceEEEe--cCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeeccCC
Confidence 998887776644 5799999993 344443 4568999999999888776 88999999999997 7889999999
Q ss_pred CCCcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe---CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEE
Q 011452 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY 372 (485)
Q Consensus 298 ~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s---D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~sva 372 (485)
.|+.+.|||....+.+..+.+|...|.|++|+| ...+||||+ |++||+||.. |+++.+..... .|.+|.
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs------QVcsL~ 394 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS------QVCSLI 394 (484)
T ss_pred CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC------ceeeEE
Confidence 999999999998899999999999999999998 667888885 9999999995 99998876543 289999
Q ss_pred ECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccch
Q 011452 373 ITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTV 452 (485)
Q Consensus 373 fSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (485)
|+|..+-|+++-. -.++-|.||+..+-+.++.+.||+.
T Consensus 395 Wsk~~kEi~sthG---------~s~n~i~lw~~ps~~~~~~l~gH~~--------------------------------- 432 (484)
T KOG0305|consen 395 WSKKYKELLSTHG---------YSENQITLWKYPSMKLVAELLGHTS--------------------------------- 432 (484)
T ss_pred EcCCCCEEEEecC---------CCCCcEEEEeccccceeeeecCCcc---------------------------------
Confidence 9999988888653 2457899999999999999999983
Q ss_pred hcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 453 AEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 453 ~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|..|+.||||..|+||+.|.|+|+|+.
T Consensus 433 -----RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 433 -----RVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred -----eeEEEEECCCCCEEEEecccCcEEeccc
Confidence 8999999999999999999999999974
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.9e-25 Score=212.53 Aligned_cols=292 Identities=13% Similarity=0.191 Sum_probs=229.3
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe------EeccCCcCcccc---eeee--ccccCc
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE------YIRRGKPDAGFA---LFES--ESLKWP 195 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw------~i~~G~~~~~~~---lf~~--~~~~~~ 195 (485)
++.+|.- ...||+|+|.|+|...|.+|. - +|.+|. +++.+..-+-++ +|+. -+.+.+
T Consensus 25 ~i~~l~d--sqairav~fhp~g~lyavgsn----s------kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsi 92 (350)
T KOG0641|consen 25 AINILED--SQAIRAVAFHPAGGLYAVGSN----S------KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSI 92 (350)
T ss_pred EEEEecc--hhheeeEEecCCCceEEeccC----C------ceEEEEccccccCcccccccccCCCeEEeeeccccCccE
Confidence 4555543 457999999999999988764 2 355554 333333211122 4443 255667
Q ss_pred eEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-------EEEEEcCCcEEEEEEc--C--CceEEEEEcCCCCeeEEEEec
Q 011452 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSISDKNVQEIKIS--P--GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-------~l~tl~~~~V~~VafS--p--g~~ll~sss~~~D~tIklWdi 264 (485)
..++++ |.|++||+||.|++||+--.+.-+ +.+..|+..|++++|- | ++.+|+++.+ +|..|.+=|-
T Consensus 93 yc~~ws-~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc 170 (350)
T KOG0641|consen 93 YCTAWS-PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDC 170 (350)
T ss_pred EEEEec-CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeec
Confidence 789998 899999999999999997665433 3466678899999998 3 7888887654 6789999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc-------CCCceEEEEEcCCCcEEEE
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT-------EFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g-------h~~~v~avaFspdg~llaS 337 (485)
.+|+.++.+.||++++.++.- -.+-.+++++.|+|||.||++-..|+.++.. +...|.+|+..|.|++|+|
T Consensus 171 ~~g~~~~a~sghtghilalys--wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s 248 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS 248 (350)
T ss_pred CCCCcceeecCCcccEEEEEE--ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence 999999999999999988764 3366777789999999999999999988743 2357999999999999999
Q ss_pred Ee-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 338 FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 338 ~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
+- |....|+|++ |..++.|--|... |+.|.|||.-.||.++|. |..|||=|++ |.+-+.|.
T Consensus 249 g~~dssc~lydirg~r~iq~f~phsad-----ir~vrfsp~a~yllt~sy-----------d~~ikltdlq-gdla~el~ 311 (350)
T KOG0641|consen 249 GHADSSCMLYDIRGGRMIQRFHPHSAD-----IRCVRFSPGAHYLLTCSY-----------DMKIKLTDLQ-GDLAHELP 311 (350)
T ss_pred ccCCCceEEEEeeCCceeeeeCCCccc-----eeEEEeCCCceEEEEecc-----------cceEEEeecc-cchhhcCc
Confidence 99 9999999998 8899999999877 999999999999999998 7999999976 65433331
Q ss_pred CCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 416 ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 416 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
- -.++|+-..+-.+-|.|..--.+|.|.|+|+.||-
T Consensus 312 ~---------------------------------~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 312 I---------------------------------MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred e---------------------------------EEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 1 01122223566789999999999999999999995
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=250.75 Aligned_cols=242 Identities=14% Similarity=0.177 Sum_probs=195.5
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC--------------------------------C---e--------
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--------------------------------Y---T-------- 226 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~--------------------------------g---~-------- 226 (485)
.|-+.|++..|| +||++||+|++|+.||||.+.. . .
T Consensus 265 ah~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 356778899998 8999999999999999998766 0 0
Q ss_pred ---E------EEEE----------cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEe
Q 011452 227 ---M------LYSI----------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (485)
Q Consensus 227 ---~------l~tl----------~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~ 287 (485)
+ ...| |...|.++.+|.++.||++ +.|+|||||++..-+||++|. |..-|.+|+|.|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS---SMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS---SMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCCeeEec---cccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 0 0111 1236999999999999976 577999999999999999998 578899999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCC-cEEEEeecCCC--C-
Q 011452 288 QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG-ELVTSFEDHLL--W- 362 (485)
Q Consensus 288 ~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G-~ll~tl~gH~~--~- 362 (485)
-|+.++++|+-|+-||||++...+......-| .-|+|++|.|||+..+-|+ +|.+++++.+| +++..+.=|.. .
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999988877666555 6899999999999999999 99999999985 45554432211 0
Q ss_pred CCCCCeeEEEECCCCC--EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccc
Q 011452 363 HPDCNTNNIYITSDQD--LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVK 440 (485)
Q Consensus 363 ~~~~~v~svafSpDG~--~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 440 (485)
.....|.++.|.|..- +|++. +|.-|||.|+.+-+++.+|+|+.+.
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTS------------nDSrIRI~d~~~~~lv~KfKG~~n~-------------------- 546 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTS------------NDSRIRIYDGRDKDLVHKFKGFRNT-------------------- 546 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEec------------CCCceEEEeccchhhhhhhcccccC--------------------
Confidence 0112389999987443 77764 3799999999888999999998741
Q ss_pred ccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 441 KHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+ ..+ .-.|++||+.|++||+|.-|.||++
T Consensus 547 -----~----------SQ~-~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 547 -----S----------SQI-SASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred -----C----------cce-eeeEccCCCEEEEeecCceEEEEeC
Confidence 0 033 4689999999999999999999985
No 76
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=3.8e-26 Score=227.67 Aligned_cols=295 Identities=13% Similarity=0.188 Sum_probs=225.2
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec------------cCCcCcccceeee--ccc
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR------------RGKPDAGFALFES--ESL 192 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~------------~G~~~~~~~lf~~--~~~ 192 (485)
.-++|.. |..++|.-+|||||..+|++|+|. .|+|.|++ .|...+..++..+ +|.
T Consensus 104 Et~ylt~-HK~~cR~aafs~DG~lvATGsaD~----------SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 104 ETKYLTS-HKSPCRAAAFSPDGSLVATGSADA----------SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred ceEEEee-cccceeeeeeCCCCcEEEccCCcc----------eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc
Confidence 3456766 888999999999999999988754 67777764 3444444455554 355
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---EEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
..+..++|. |...+|+|||.|+|||+||...-. ....+. .++|.+|.|+|+|.++..+. .+.+++|+|++|-+
T Consensus 173 devn~l~FH-Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT--dHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 173 DEVNDLDFH-PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT--DHPTLRLYDVNTYQ 249 (430)
T ss_pred Ccccceeec-chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec--CCCceeEEecccee
Confidence 566689997 789999999999999999986433 234444 37899999999554444322 34799999999999
Q ss_pred EEEEee---cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCC-ceEEEEEcCCCcEEEEEe-CCc
Q 011452 269 VLKSFN---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFM-TPSAFIFLYENQLFLTFR-NRT 342 (485)
Q Consensus 269 ~L~tl~---~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~-~v~avaFspdg~llaS~s-D~T 342 (485)
|..+-+ +|.+.+..|.++ +.+...+++|.||.|||||=-+++|++++ +.|.+ .|-+..|..+|++++|++ |.+
T Consensus 250 cfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred EeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 987765 788889999997 44666667899999999999999999987 34654 788888999999999999 999
Q ss_pred EEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec-CCCCC
Q 011452 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR-ASNGL 420 (485)
Q Consensus 343 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~-gH~~~ 420 (485)
||||.+. |.++..+.|-...--..--....|....+|++.-.. ..+++--||-.|+..++.+. ||++
T Consensus 329 vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE----------as~slcsWdaRtadr~~l~slgHn~- 397 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE----------ASNSLCSWDARTADRVALLSLGHNG- 397 (430)
T ss_pred eeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc----------ccCceeeccccchhhhhhcccCCCC-
Confidence 9999994 999999887522100000123456666677776432 13678889999987776653 6763
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|+.+.-||.+.-..|+|.|-.+|.|-
T Consensus 398 -------------------------------------a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 398 -------------------------------------AVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred -------------------------------------CceEEEeCCCCCceeeecccceeeeee
Confidence 888999999999999999999999993
No 77
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.9e-27 Score=249.17 Aligned_cols=231 Identities=14% Similarity=0.212 Sum_probs=199.9
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCC-Ce-----EEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC-
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YT-----MLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG- 267 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~-----~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG- 267 (485)
.+--|.|+|++|-+|+.|++||+|+... +. ++.++ |.+||++++..-.+..++|+| .|-|||+|+.+.+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S--sDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS--SDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec--CCceEEEeecccCc
Confidence 3445678999999999999999999753 11 24444 346999999997665566655 4589999999988
Q ss_pred -eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee----------EEecc-cCCCceEEEEEcCCCcEE
Q 011452 268 -TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL----------TEVSR-TEFMTPSAFIFLYENQLF 335 (485)
Q Consensus 268 -~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~----------~~~l~-gh~~~v~avaFspdg~ll 335 (485)
-|+.++..|.+.|.+++..++.++..++||-|+.|.|||+.+|.. ...+. |+...|+++|-.+.|..|
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence 689999999999999999888888899999999999999998832 12233 899999999999999999
Q ss_pred EEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 336 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 336 aS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
++|+ .+-+++||.+ ++.+..|.||+.- |+.|.+++||..++|+|. ||||||||+...+|++|
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdN-----Vr~ll~~dDGt~~ls~sS-----------DgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDN-----VRVLLVNDDGTRLLSASS-----------DGTIRLWDLGQQRCLAT 250 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccc-----eEEEEEcCCCCeEeecCC-----------CceEEeeeccccceeee
Confidence 9999 9999999996 9999999999965 999999999999999986 89999999999999999
Q ss_pred ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 414 IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 414 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
+..|.+ .||++.-+|+=+.+|+|++||.|..=
T Consensus 251 ~~vH~e--------------------------------------~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 251 YIVHKE--------------------------------------GVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred EEeccC--------------------------------------ceEEEeeCCCcceEEecCCCCcEEec
Confidence 999983 89999999999999999999998653
No 78
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=7.5e-27 Score=242.49 Aligned_cols=291 Identities=12% Similarity=0.111 Sum_probs=235.1
Q ss_pred cccccCCCCcccccccccccccceEEEEEe---cCEEEEEeCCCeEEeeeccc-CcEEEEeecCCcccEEEEEEeeCCCE
Q 011452 75 EYDTHDPKGHCSMVLPFLRKRSKIIEIVAA---RDIVFALAQSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDS 150 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s---~~~ias~s~dgtiklW~~~t-G~~l~tl~g~~~~~i~sv~~spdg~~ 150 (485)
.+.+|-|+-+.+. .+- |.-.|.+|-|. +-.|+|++.|+.|+||+... +.|++|+.| |..+|+++.||++|..
T Consensus 197 ~~rc~~Pkk~~~~-~~g--H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~ 272 (503)
T KOG0282|consen 197 EERCYLPKKLSHN-LSG--HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTS 272 (503)
T ss_pred cceeeccHhheee-ccC--CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCe
Confidence 6667777766655 344 77788888887 89999999999999999877 899999998 9999999999999999
Q ss_pred EEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC-eEEEEeeCCCcEEEeecCCCeEEE
Q 011452 151 LITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLY 229 (485)
Q Consensus 151 Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG-~~Las~s~D~tiKlWdl~~g~~l~ 229 (485)
+.|+| .| +.++|||.++|++.. -|..+ .-+..|.|. |++ .++..|..|+.|+.||..+++.++
T Consensus 273 fLS~s----fD------~~lKlwDtETG~~~~---~f~~~--~~~~cvkf~-pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 273 FLSAS----FD------RFLKLWDTETGQVLS---RFHLD--KVPTCVKFH-PDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred eeeee----cc------eeeeeeccccceEEE---EEecC--CCceeeecC-CCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 99977 67 899999999999832 34432 345689997 555 888889999999999999999776
Q ss_pred EEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEE
Q 011452 230 SIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILD 306 (485)
Q Consensus 230 tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWD 306 (485)
..- -..|.+|.|=|++...+++++ |++++||+...+-.++-.. .++|....|... |.+..+++-+.|+.|-|+.
T Consensus 337 eYd~hLg~i~~i~F~~~g~rFissSD--dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEGRRFISSSD--DKSVRIWENRIPVPIKNIADPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHhhhhheeeeEEccCCceEeeecc--CccEEEEEcCCCccchhhcchhhccCcceecC-CCCCeehhhccCceEEEEe
Confidence 653 358999999997777777654 4899999999888776554 334555677765 5455555557999999998
Q ss_pred CCCC---eeEEecccCCC--ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC-CC
Q 011452 307 VRNF---ELTEVSRTEFM--TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-QD 378 (485)
Q Consensus 307 v~tg---~~~~~l~gh~~--~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD-G~ 378 (485)
+... ...+.++||.. ..-.+.|||||.+|+||. ||.+-+||.. -+++.+|..|... +.++.|.|. -.
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~-----ci~v~wHP~e~S 488 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP-----CIGVDWHPVEPS 488 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcc-----eEEEEecCCCcc
Confidence 6642 34566788864 445578999999999999 9999999996 9999999999766 778999995 46
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
.+|+++. ||.||+||
T Consensus 489 kvat~~w-----------~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCGW-----------DGLIKIWD 503 (503)
T ss_pred eeEeccc-----------CceeEecC
Confidence 7888877 79999996
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.3e-25 Score=221.52 Aligned_cols=322 Identities=14% Similarity=0.189 Sum_probs=230.9
Q ss_pred cccccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCC
Q 011452 84 HCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDN 161 (485)
Q Consensus 84 ~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d 161 (485)
-+.+.--+.-|+..|+.|++. +.++.++|-|.|.+||.+++|.||.+..| |.+.|+||.|+|.+++++++|. |
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~L~lTaSG----D 211 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGLLLLTASG----D 211 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-cccceeeEEeccccceEEEccC----C
Confidence 344444556678889999988 77999999999999999999999999988 8999999999999999999884 3
Q ss_pred CcccceeEEEEeEe----ccCCcCcccceeeeccccCceEEEEeCCCCeEEE-E-eeCCCcEEEeecCCCeEEEEEcC--
Q 011452 162 FSSLRCRSTRIEYI----RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLT-Y-SAQDSIYKVFDLKNYTMLYSISD-- 233 (485)
Q Consensus 162 ~stL~~~t~~lw~i----~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~La-s-~s~D~tiKlWdl~~g~~l~tl~~-- 233 (485)
.+..||.. +..+.++ ...+.. ...++-++.+..-+- + .++..|||+ .+..|.+
T Consensus 212 ------~taHIW~~av~~~vP~~~a-----~~~hSs-EeE~e~sDe~~~d~d~~~~sD~~tiRv-------Pl~~ltgH~ 272 (481)
T KOG0300|consen 212 ------ETAHIWKAAVNWEVPSNNA-----PSDHSS-EEEEEHSDEHNRDTDSSEKSDGHTIRV-------PLMRLTGHR 272 (481)
T ss_pred ------cchHHHHHhhcCcCCCCCC-----CCCCCc-hhhhhcccccccccccccccCCceeee-------eeeeeeccc
Confidence 47778862 1111111 000000 001221111111110 0 122235543 3444444
Q ss_pred CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCC-e
Q 011452 234 KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNF-E 311 (485)
Q Consensus 234 ~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg-~ 311 (485)
..|.+..+-.|+.-+++++ .|.|.-|||+|+|+++..|.||.+...-+.-.| .++|++. +.|-|.||||.+-. .
T Consensus 273 ~vV~a~dWL~gg~Q~vTaS--WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~ 348 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTAS--WDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQ 348 (481)
T ss_pred cceEehhhhcCcceeeeee--ccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcc
Confidence 4566666665666666654 558999999999999999999988777665442 6777775 79999999999943 3
Q ss_pred eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCC
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~ 388 (485)
...++.||++.|.++.|.-|-+ ++|+| |+|||+||++ ...+.|+.-.. . +|-|+++.-+..||---+
T Consensus 349 sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS-~-----~NRvavs~g~~iIAiPhD--- 418 (481)
T KOG0300|consen 349 SVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDS-P-----ANRVAVSKGHPIIAIPHD--- 418 (481)
T ss_pred eeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCC-c-----cceeEeecCCceEEeccC---
Confidence 4677899999999999998876 77888 9999999995 66788876543 2 799999998888887542
Q ss_pred CCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 389 DDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
...|||+|+. |+.|+.|.-.+ +.+ | -.-|++++|.++-
T Consensus 419 --------NRqvRlfDln-G~RlaRlPrts----------Rqg----------H-------------rRMV~c~AW~eeh 456 (481)
T KOG0300|consen 419 --------NRQVRLFDLN-GNRLARLPRTS----------RQG----------H-------------RRMVTCCAWLEEH 456 (481)
T ss_pred --------CceEEEEecC-CCccccCCccc----------ccc----------c-------------ceeeeeeeccccC
Confidence 5789999965 99888886321 000 1 0379999999876
Q ss_pred C--EEEEecCCCcEEEccC
Q 011452 469 N--EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 469 ~--~LaSgs~DgtVklWd~ 485 (485)
. -|.|++.|..|-=|.+
T Consensus 457 p~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred cccccccccccceeeeeEe
Confidence 4 5899999999999963
No 80
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=2.3e-24 Score=211.59 Aligned_cols=275 Identities=16% Similarity=0.176 Sum_probs=219.0
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|.-|+.+|-+. ||.|++.+.|.+..+|=-..|++|-|..| |.+.||++..+-+.+.|+|+|+ | .+++
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGSA----D------~t~k 77 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGSA----D------QTAK 77 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeeccc----c------ceeE
Confidence 34455555555 99999999999999999878999999998 9999999999999999999886 3 5999
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee-----CCCcEEEeecC-------CCeEEEEEc--CCcEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA-----QDSIYKVFDLK-------NYTMLYSIS--DKNVQ 237 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s-----~D~tiKlWdl~-------~g~~l~tl~--~~~V~ 237 (485)
|||+++||..+ +|.. -..+..|+|+ ++|.+++.+. .-+.|-++|+. .-++++.+. +..+.
T Consensus 78 LWDv~tGk~la---~~k~--~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 78 LWDVETGKQLA---TWKT--NSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred EEEcCCCcEEE---Eeec--CCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 99999999832 3443 3456689998 6887776664 35789999987 344566664 46788
Q ss_pred EEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE-EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec
Q 011452 238 EIKISPGIMLLIFTKASGHVPLKILSIEDGTVL-KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS 316 (485)
Q Consensus 238 ~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L-~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l 316 (485)
.+-++|-+..++++ ..|+.|.+||+++|+++ .+-+.|.+.+..+.|+ ++...++++|.|.|-||||+.+-+++++.
T Consensus 152 ~a~Wg~l~~~ii~G--he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 152 SALWGPLGETIIAG--HEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeecccCCEEEEe--cCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEe
Confidence 99999944445553 45589999999999665 5557888999999997 78899999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe--CC-C------------cEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 317 RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN--FR-G------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 317 ~gh~~~v~avaFspdg~llaS~s-D~TIklWd--~~-G------------~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
.... +|++.+++|-...++-++ ..---+=. .+ | |.+....||-.+ +|+|||+|||+.-
T Consensus 229 ~te~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP-----INsvAfhPdGksY 302 (327)
T KOG0643|consen 229 TTER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP-----INSVAFHPDGKSY 302 (327)
T ss_pred eecc-cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC-----cceeEECCCCccc
Confidence 7665 899999999888777665 22111111 11 3 346678899988 9999999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+||+. ||.|||--.
T Consensus 303 sSGGE-----------DG~VR~h~F 316 (327)
T KOG0643|consen 303 SSGGE-----------DGYVRLHHF 316 (327)
T ss_pred ccCCC-----------CceEEEEEe
Confidence 98875 899999644
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=3e-24 Score=210.21 Aligned_cols=298 Identities=14% Similarity=0.117 Sum_probs=238.1
Q ss_pred hhHHHhhhccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeec-CCcccEE
Q 011452 62 DAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIR 140 (485)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g-~~~~~i~ 140 (485)
..++.|| .++++|..+.++..++-. |..||++|.|+++++|+++.++++..++. +|...|-
T Consensus 7 ~~~~l~~-----r~~~~~~~~v~Sv~wn~~-------------g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd 68 (313)
T KOG1407|consen 7 KFKSLKR-----RELQGHVQKVHSVAWNCD-------------GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD 68 (313)
T ss_pred chhhhhh-----HHhhhhhhcceEEEEccc-------------CceeeecccCCceEEEEecchhhhhhhcccCCCcchh
Confidence 3455555 566777766666665555 99999999999999999998876665533 3666778
Q ss_pred EEEEee-CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEE
Q 011452 141 SLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 219 (485)
Q Consensus 141 sv~~sp-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKl 219 (485)
-+.+.| +.+.++++|+ | ++|++||+++||+.+ +.+..+-...+.++ |+|++++.+..|..|-.
T Consensus 69 ql~w~~~~~d~~atas~----d------k~ir~wd~r~~k~~~-----~i~~~~eni~i~ws-p~g~~~~~~~kdD~it~ 132 (313)
T KOG1407|consen 69 QLCWDPKHPDLFATASG----D------KTIRIWDIRSGKCTA-----RIETKGENINITWS-PDGEYIAVGNKDDRITF 132 (313)
T ss_pred hheeCCCCCcceEEecC----C------ceEEEEEeccCcEEE-----EeeccCcceEEEEc-CCCCEEEEecCcccEEE
Confidence 888865 4678888774 3 599999999999832 22223333468887 78999999999999999
Q ss_pred eecCCCeEEEEEcC-CcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe
Q 011452 220 FDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ 297 (485)
Q Consensus 220 Wdl~~g~~l~tl~~-~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s 297 (485)
.|..+++.+.+.+. -.|.++.|+ ++.+...+.+ -++|.|.+-..-+.+++++.|...-..|.|. |+|.++++|+
T Consensus 133 id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G---lG~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~Gs 208 (313)
T KOG1407|consen 133 IDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNG---LGCVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGS 208 (313)
T ss_pred EEecccceeehhcccceeeeeeecCCCCEEEEecC---CceEEEEeccccccccccccCCcceEEEEEC-CCCceEeecc
Confidence 99999988777764 479999999 6777665532 3799999999889999999988777899996 8899999999
Q ss_pred CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 298 ~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
.|-.+-|||++.--|.+.+.-+.-.|..+.||+||++|||+| |.-|-|=+++ |..+.... |... .++||+.|
T Consensus 209 ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~-----t~tVAWHP 282 (313)
T KOG1407|consen 209 ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGP-----TFTVAWHP 282 (313)
T ss_pred ccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCC-----ceeEEecC
Confidence 999999999999999999999999999999999999999999 9999999996 99888775 3444 79999999
Q ss_pred CCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 376 DQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 376 DG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
..-+||=+|.|...| ..-+.|++||+-+
T Consensus 283 k~~LLAyA~ddk~~d--~~reag~vKiFG~ 310 (313)
T KOG1407|consen 283 KRPLLAYACDDKDGD--SNREAGTVKIFGL 310 (313)
T ss_pred CCceeeEEecCCCCc--cccccceeEEecC
Confidence 999999888632112 0113478888754
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.5e-25 Score=214.73 Aligned_cols=285 Identities=16% Similarity=0.180 Sum_probs=213.7
Q ss_pred CcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecC-CcccEEEEEEeeCCCE-EEEEEeecCC
Q 011452 83 GHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVT-ADEVIRSLFYNKNNDS-LITVSVYASD 160 (485)
Q Consensus 83 ~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~-~~~~i~sv~~spdg~~-Las~S~d~~~ 160 (485)
.++.-|+||+-.|=. ++.++.+ -+.-.|++-+-++..++.|..++.+ -++.+..|++|++.+. +++++. |
T Consensus 11 GysvqfSPf~~nrLa---vAt~q~y--Gl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G---D 82 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLA---VATAQHY--GLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG---D 82 (311)
T ss_pred cceeEecccccchhh---eeehhhc--ccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec---C
Confidence 456777888544422 2222221 2334677778776546655554443 3457999999998654 555553 3
Q ss_pred CCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEE
Q 011452 161 NFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQE 238 (485)
Q Consensus 161 d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~ 238 (485)
++++|||. +.+..-...|+ ||-.-+.+|.++..+++.++++|.|+|||||+..-++-+.|+.++ -|..
T Consensus 83 -------GSLrl~d~--~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~ 152 (311)
T KOG0277|consen 83 -------GSLRLFDL--TMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQ 152 (311)
T ss_pred -------ceEEEecc--CCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEE
Confidence 49999994 33322123454 466677789998889999999999999999999888888888764 5999
Q ss_pred EEEcC-CceEEEEEcCCCCeeEEEEecCC-CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eeEEe
Q 011452 239 IKISP-GIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-ELTEV 315 (485)
Q Consensus 239 VafSp-g~~ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-~~~~~ 315 (485)
.+||| ..-+++++ ++|++++|||+.. |+.+. +..|...+.+.+|+-.+...|++++.|++||+||+++- ..+-.
T Consensus 153 a~~sp~~~nlfas~--Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 153 AAFSPHIPNLFASA--SGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred EecCCCCCCeEEEc--cCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee
Confidence 99998 44444443 4569999999864 66655 88888888999998655555556789999999999974 46777
Q ss_pred cccCCCceEEEEEcCC-CcEEEEEe-CCcEEEEeCC-C-cEEEEeecCCCCCCCCCeeEEEECC-CCCEEEEEecCCCCC
Q 011452 316 SRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDD 390 (485)
Q Consensus 316 l~gh~~~v~avaFspd-g~llaS~s-D~TIklWd~~-G-~ll~tl~gH~~~~~~~~v~svafSp-DG~~LaS~s~d~~~d 390 (485)
+.||.-.|..|.|||- -.+|||++ |-|++|||.. + .++.+.+-|+.. |..+.+|+ ++.++||.+.
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF-----v~g~Dws~~~~~~vAs~gW----- 299 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF-----VCGLDWSLFDPGQVASTGW----- 299 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceE-----EeccccccccCceeeeccc-----
Confidence 8999999999999995 46788999 9999999996 4 377888888877 88898888 6789999988
Q ss_pred CCCcCCCCeEEEEe
Q 011452 391 PLAEGNAGSINISN 404 (485)
Q Consensus 391 ~~~~~~DgtIklWd 404 (485)
|++++||+
T Consensus 300 ------De~l~Vw~ 307 (311)
T KOG0277|consen 300 ------DELLYVWN 307 (311)
T ss_pred ------ccceeeec
Confidence 79999998
No 83
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-24 Score=229.07 Aligned_cols=265 Identities=12% Similarity=0.150 Sum_probs=216.6
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccccee
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf 187 (485)
+++.+....+.||+-.+|+...-... +.+.|.||.|+++|+.||.+- .+ +++.|||+.+.+.. .-+
T Consensus 190 ~laValg~~vylW~~~s~~v~~l~~~-~~~~vtSv~ws~~G~~LavG~----~~------g~v~iwD~~~~k~~---~~~ 255 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSGSVTELCSF-GEELVTSVKWSPDGSHLAVGT----SD------GTVQIWDVKEQKKT---RTL 255 (484)
T ss_pred eEEEEecceEEEEecCCCceEEeEec-CCCceEEEEECCCCCEEEEee----cC------CeEEEEehhhcccc---ccc
Confidence 44555677899999999984432223 367899999999999999854 44 69999998655542 112
Q ss_pred eeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE-E--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEec
Q 011452 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-I--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 188 ~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t-l--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi 264 (485)
...|...++.+++. +.+|.+|+.|+.|..+|+...+.+.. + |...|-.+++++++..+++ ++.|+.+.|||.
T Consensus 256 ~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lAS--GgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLAS--GGNDNVVFIWDG 330 (484)
T ss_pred cCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeecc--CCCccceEeccC
Confidence 21145677889984 68999999999999999988775433 4 4568999999987777765 457799999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEe--CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEE-e--
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-R-- 339 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~-s-- 339 (485)
.+-+.++++..|...|+.++|.|-..+.||+|+ .|++|++||+.+|+++...-.. ..|.+++|++..+-|+++ +
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCC
Confidence 888899999999999999999987788888863 9999999999999999887544 489999999988655554 4
Q ss_pred CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 340 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 340 D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
+..|.||+.. =+++..|.||... |..++.||||+.|++|+. |.|+|+|++-..
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~R-----Vl~la~SPdg~~i~t~a~-----------DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSR-----VLYLALSPDGETIVTGAA-----------DETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcce-----eEEEEECCCCCEEEEecc-----------cCcEEeccccCC
Confidence 8899999994 8899999999987 999999999999999987 799999998753
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.7e-25 Score=231.11 Aligned_cols=231 Identities=15% Similarity=0.140 Sum_probs=193.5
Q ss_pred cCceEEEEeC--CCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 193 KWPGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 193 ~~~~~V~Fs~--pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
..+.++.|+| |..-. +++| -.+.|++..+-..+.++. ...|.++.|-.||.||+++. ..+-|||+|+.+..
T Consensus 27 ~~vssl~fsp~~P~d~a-Vt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD--~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFA-VTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD--ESGHVKVFDMKSRV 101 (487)
T ss_pred CcceeEecCCCCCCceE-Eecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC--CcCcEEEeccccHH
Confidence 4567899985 22222 3333 478899988777667665 46899999998888887743 44899999988777
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEE
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVW 346 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklW 346 (485)
.|..|..|++++..+.|.++++..++++++|+.+|+||+.+...+..+.||++.|.+.+++|... +++||+ ||+||+|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 89999999999999999988777777789999999999999998668899999999999999766 889999 9999999
Q ss_pred eCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe-EEEEecCCCCCCCC
Q 011452 347 NFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK-CLAKIRASNGLPAE 423 (485)
Q Consensus 347 d~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk-~l~tl~gH~~~~~~ 423 (485)
|.+ +..+.+|. |..+ |.+|.|-|.|.+|||++. +.||+||+.+|. .+..+..|.
T Consensus 182 DtR~~~~~v~eln-hg~p-----Ve~vl~lpsgs~iasAgG------------n~vkVWDl~~G~qll~~~~~H~----- 238 (487)
T KOG0310|consen 182 DTRSLTSRVVELN-HGCP-----VESVLALPSGSLIASAGG------------NSVKVWDLTTGGQLLTSMFNHN----- 238 (487)
T ss_pred EeccCCceeEEec-CCCc-----eeeEEEcCCCCEEEEcCC------------CeEEEEEecCCceehhhhhccc-----
Confidence 995 67888885 6655 999999999999999985 789999998664 455444476
Q ss_pred cccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 424 NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..|+||.|..|++.|+|||-|+.||++|
T Consensus 239 ---------------------------------KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 239 ---------------------------------KTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred ---------------------------------ceEEEEEeecCCceEeecccccceEEEE
Confidence 2899999999999999999999999987
No 85
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.93 E-value=8.2e-22 Score=188.54 Aligned_cols=322 Identities=17% Similarity=0.284 Sum_probs=241.4
Q ss_pred ccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCc-EEEEeecCCcccEEEEEE-eeCCCEEEEEEeecCCCCcccc
Q 011452 91 FLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ-RICFLNVTADEVIRSLFY-NKNNDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 91 ~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~-~l~tl~g~~~~~i~sv~~-spdg~~Las~S~d~~~d~stL~ 166 (485)
...+...|..+.+. +..++.++.|+.+.+|+...+. .+..+.+.+...+..+.+ ++++..++... +..+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d----- 133 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS--SSLD----- 133 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc--CCCC-----
Confidence 34567778888888 8899999999999999988776 777777644446888888 88888444432 2224
Q ss_pred eeEEEEeEecc-CCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC-CCcEEEeecCCCeEEEEEcC--CcEEEEEEc
Q 011452 167 CRSTRIEYIRR-GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD--KNVQEIKIS 242 (485)
Q Consensus 167 ~~t~~lw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~-D~tiKlWdl~~g~~l~tl~~--~~V~~VafS 242 (485)
.++.+|++.. +... ..+. .+...+..++|+ |+++.+++++. |+++++|++.++..+.++.+ ..|..++|+
T Consensus 134 -~~~~~~~~~~~~~~~---~~~~-~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 134 -GTVKLWDLSTPGKLI---RTLE-GHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred -ccEEEEEecCCCeEE---EEEe-cCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc
Confidence 5899999765 3331 1122 234455689998 79999999986 99999999998888887764 689999999
Q ss_pred CCce-EEEEEcCCCCeeEEEEecCCCeEEE-EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee-EEecccC
Q 011452 243 PGIM-LLIFTKASGHVPLKILSIEDGTVLK-SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL-TEVSRTE 319 (485)
Q Consensus 243 pg~~-ll~sss~~~D~tIklWdi~tG~~L~-tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~-~~~l~gh 319 (485)
|.+. ++++ .+.|++|++||..+++++. .+.+|.... -..|. +++..+++++.|+++++||+..... +..+.+|
T Consensus 208 ~~~~~~~~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 208 PDGGLLIAS--GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred CCcceEEEE--ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence 8665 4444 3456899999999999999 688876664 33565 5566777789999999999997664 5555788
Q ss_pred CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEee--cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 320 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~--gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
...+.++.|.|++..+++++ |+++++||.. +....... .|... +..+.|+|++..++.+..
T Consensus 284 ~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------- 348 (466)
T COG2319 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP-----VSSLSFSPDGSLLVSGGS---------- 348 (466)
T ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc-----eEEEEECCCCCEEEEeec----------
Confidence 99999999999999999987 9999999996 66565555 77654 889999545456666532
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEE-e
Q 011452 396 NAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYT-G 474 (485)
Q Consensus 396 ~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaS-g 474 (485)
.|+.+++|++.+.........+. .+..+.|++ ...+++ +
T Consensus 349 ~d~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~-~~~~~~~~ 388 (466)
T COG2319 349 DDGTIRLWDLRTGKPLKTLEGHS---------------------------------------NVLSVSFSP-DGRVVSSG 388 (466)
T ss_pred CCCcEEeeecCCCceeEEecCCc---------------------------------------eEEEEEECC-CCCEEEEe
Confidence 26999999998877333333321 378899999 555555 7
Q ss_pred cCCCcEEEcc
Q 011452 475 NRHGLVHVWS 484 (485)
Q Consensus 475 s~DgtVklWd 484 (485)
+.++.+.+|+
T Consensus 389 ~~~~~~~~~~ 398 (466)
T COG2319 389 STDGTVRLWD 398 (466)
T ss_pred cCCCceEEEe
Confidence 9999999997
No 86
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.9e-24 Score=223.71 Aligned_cols=274 Identities=15% Similarity=0.213 Sum_probs=213.0
Q ss_pred cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC------------cccceeee--ccccCceEE
Q 011452 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD------------AGFALFES--ESLKWPGFV 198 (485)
Q Consensus 133 g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~------------~~~~lf~~--~~~~~~~~V 198 (485)
+.|.-.|.+|+++||+..+.++|-++ ++-=|++.+|+-+ .+.++-.. .|.+++..+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g----------~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDG----------TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCc----------ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 44778899999999999999988543 5556777777642 11222222 356667789
Q ss_pred EEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC
Q 011452 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (485)
Q Consensus 199 ~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~ 276 (485)
+.| +||++||+|+.|+-|.|||..+.+.++++.+ +.|.+++|-.|---+.+++ .|.+||+|+++.-..+.||=||
T Consensus 209 avS-~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s--~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 209 AVS-SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS--ADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred EEc-CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee--cCCceEEEehhHhHHHHHHhCC
Confidence 998 7999999999999999999999999988865 5899999995433334433 4589999999988888999999
Q ss_pred CcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEE
Q 011452 277 LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 353 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll 353 (485)
+..+..|+-. .-++.++. +.|.|+|||++ ..+...++++|...+-+++|-.+.. |+||| ||.|.||++. -+.+
T Consensus 286 qd~v~~IdaL--~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 286 QDGVLGIDAL--SRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred ccceeeechh--cccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCce
Confidence 9999999864 35788875 59999999999 4667778899999999999977665 78999 9999999995 6665
Q ss_pred EEee-cCC-----------CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC-eEEEEecCCCCC
Q 011452 354 TSFE-DHL-----------LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG-KCLAKIRASNGL 420 (485)
Q Consensus 354 ~tl~-gH~-----------~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG-k~l~tl~gH~~~ 420 (485)
.+.. .|. .| |++||..|..+++||||. +|.||||-+.+| +.+.-|..-.
T Consensus 362 f~~~~AHgv~~~~~~~~~~~W-----itsla~i~~sdL~asGS~-----------~G~vrLW~i~~g~r~i~~l~~ls-- 423 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFW-----ITSLAVIPGSDLLASGSW-----------SGCVRLWKIEDGLRAINLLYSLS-- 423 (479)
T ss_pred eEeeccccccCCccccccccc-----eeeeEecccCceEEecCC-----------CCceEEEEecCCccccceeeecc--
Confidence 5433 222 26 899999999999999997 799999999887 2222221111
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEec
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN 475 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs 475 (485)
+...|++|+|+++|+.|+.|-
T Consensus 424 ----------------------------------~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 424 ----------------------------------LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ----------------------------------cccEEEEEEEccCCCEEEEec
Confidence 013999999999999777663
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=8.9e-24 Score=206.91 Aligned_cols=276 Identities=13% Similarity=0.163 Sum_probs=225.9
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee---ccccCceEEEEeCCCCeE
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~pnG~~ 207 (485)
+++ |...|.||+||-+|..||++| .| +++.+|.+..+++ +++. ++...+..+.+++++-..
T Consensus 16 ~~~-~~~~v~Sv~wn~~g~~lasgs----~d------ktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 16 LQG-HVQKVHSVAWNCDGTKLASGS----FD------KTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhh-hhhcceEEEEcccCceeeecc----cC------CceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcc
Confidence 444 677899999999999999966 44 6999999977755 2332 233445567899999999
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEE
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~ 284 (485)
+++++.|++|++||...+++...+. +.++ -+.+|| |+..++.. .|.-|-..|+.+-+.+++.+.. -.+..+.
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~---kdD~it~id~r~~~~~~~~~~~-~e~ne~~ 154 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGN---KDDRITFIDARTYKIVNEEQFK-FEVNEIS 154 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEec---CcccEEEEEecccceeehhccc-ceeeeee
Confidence 9999999999999999999988875 3344 467886 55555543 3357788888887777766521 3456788
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 362 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~ 362 (485)
|. .++..+......|+|.|...-.-+.++.+..|.....++.|+|+|++||+|+ |-.+.|||++ --|++.+.-|.-+
T Consensus 155 w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp 233 (313)
T KOG1407|consen 155 WN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP 233 (313)
T ss_pred ec-CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc
Confidence 87 5677777788889999999999999999999999999999999999999999 9999999996 8899999988755
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
|+.|.||-||++|||||. |-.|-|=+++||.-+..++- +.
T Consensus 234 -----VRTlSFS~dg~~lASaSE-----------Dh~IDIA~vetGd~~~eI~~-~~----------------------- 273 (313)
T KOG1407|consen 234 -----VRTLSFSHDGRMLASASE-----------DHFIDIAEVETGDRVWEIPC-EG----------------------- 273 (313)
T ss_pred -----eEEEEeccCcceeeccCc-----------cceEEeEecccCCeEEEeec-cC-----------------------
Confidence 999999999999999987 79999999999999998853 31
Q ss_pred ccccccccchhcccCCeEEEEEcCCCCEEEEecCC---------CcEEEc
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH---------GLVHVW 483 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D---------gtVklW 483 (485)
.-.+|+|+|....||=+..| |+||+.
T Consensus 274 ---------------~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 274 ---------------PTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ---------------CceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 66789999999999988754 577765
No 88
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=3e-24 Score=224.60 Aligned_cols=291 Identities=16% Similarity=0.210 Sum_probs=211.6
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCc-----EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQ-----RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~-----~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
-|.++++. |-.+++||.|-+|++||.+ |. -.+.|.......|+|+.|||.|++|..+|. . -+
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~-gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg---~-------aq 237 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQ-GMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG---S-------AQ 237 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecc-cccccchhhhccCcccccccceeeecCCCCeEEEEec---C-------cc
Confidence 35556665 9999999999999999987 54 355677766778999999999999998773 2 27
Q ss_pred EEEeEeccCCc-------Ccccc-eeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEcCCcEEEE
Q 011452 170 TRIEYIRRGKP-------DAGFA-LFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKNVQEI 239 (485)
Q Consensus 170 ~~lw~i~~G~~-------~~~~~-lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~~~~V~~V 239 (485)
++|.| +.|.. |+++. +..+ +|..-+...+|.|-+-..+.++|.|+|+|+||+.+-+ .+..|...
T Consensus 238 akl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k----- 311 (641)
T KOG0772|consen 238 AKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK----- 311 (641)
T ss_pred eeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-----
Confidence 78888 67764 12211 1111 2333233567876666677788888888888887543 12222100
Q ss_pred EEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---eEEec
Q 011452 240 KISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE---LTEVS 316 (485)
Q Consensus 240 afSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---~~~~l 316 (485)
| +. +.--.+..++|+ +++..++++..||.|++||..+.. -..+-
T Consensus 312 ---~---------------------~~--------g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 312 ---P---------------------AG--------GKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred ---c---------------------CC--------CcccCceeeecC-CCcchhhhcccCCceeeeecCCcccccceEee
Confidence 0 00 100123467775 666666777899999999985432 23444
Q ss_pred ccCCC--ceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCC
Q 011452 317 RTEFM--TPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDP 391 (485)
Q Consensus 317 ~gh~~--~v~avaFspdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~ 391 (485)
..|.. .+++|+|||||++|||=+ |.++||||++ .++|.+.+|-...-+ -.+++||||.++|++|...+..+
T Consensus 359 ~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~---~tdc~FSPd~kli~TGtS~~~~~- 434 (641)
T KOG0772|consen 359 DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP---GTDCCFSPDDKLILTGTSAPNGM- 434 (641)
T ss_pred eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC---CCccccCCCceEEEecccccCCC-
Confidence 57877 999999999999999999 9999999995 889998887655422 35789999999999998644332
Q ss_pred CCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE
Q 011452 392 LAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI 471 (485)
Q Consensus 392 ~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L 471 (485)
..|++-++|-.|=+.+++|--.+ ..|-.+.|+|-=+.|
T Consensus 435 ----~~g~L~f~d~~t~d~v~ki~i~~--------------------------------------aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 435 ----TAGTLFFFDRMTLDTVYKIDIST--------------------------------------ASVVRCLWHPKLNQI 472 (641)
T ss_pred ----CCceEEEEeccceeeEEEecCCC--------------------------------------ceEEEEeecchhhhe
Confidence 35789999999999999885433 267889999999999
Q ss_pred EEecCCCcEEEc
Q 011452 472 YTGNRHGLVHVW 483 (485)
Q Consensus 472 aSgs~DgtVklW 483 (485)
.-|+.||++||+
T Consensus 473 ~~gsgdG~~~vy 484 (641)
T KOG0772|consen 473 FAGSGDGTAHVY 484 (641)
T ss_pred eeecCCCceEEE
Confidence 999999999986
No 89
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=5e-24 Score=237.33 Aligned_cols=289 Identities=12% Similarity=0.112 Sum_probs=222.5
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc----CCc-Ccc--cceeee-ccccCceEEEEe
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR----GKP-DAG--FALFES-ESLKWPGFVEFD 201 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~----G~~-~~~--~~lf~~-~~~~~~~~V~Fs 201 (485)
++-++++..|.||..+|||..+||++. ..| ..+.||.... -+. +.- ..|++. .|.+.+..|.|+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq--~~d------~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQ--VLD------GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS 78 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCc--ccc------ccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC
Confidence 344556678999999999999998662 123 3555887510 000 000 113333 466667789998
Q ss_pred CCCCeEEEEeeCCCcEEEeecCC------------------CeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEE
Q 011452 202 DVNGKVLTYSAQDSIYKVFDLKN------------------YTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 202 ~pnG~~Las~s~D~tiKlWdl~~------------------g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIkl 261 (485)
|||++||+||+|+.|-||.... .++..++ |...|.+|++||++.++++.+ .|++|-|
T Consensus 79 -~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s--~DnsVii 155 (942)
T KOG0973|consen 79 -PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS--LDNSVII 155 (942)
T ss_pred -CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec--ccceEEE
Confidence 8999999999999999999772 1134445 456899999999888887765 5689999
Q ss_pred EecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCC------ceEEEEEcCCCcEE
Q 011452 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM------TPSAFIFLYENQLF 335 (485)
Q Consensus 262 Wdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~------~v~avaFspdg~ll 335 (485)
||..+.++++++++|+..|+.|.|- |-|.++++-++|+||+||++.+-.+.+...+++. ....+.|||||++|
T Consensus 156 wn~~tF~~~~vl~~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 156 WNAKTFELLKVLRGHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred EccccceeeeeeecccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCee
Confidence 9999999999999999999999995 6788888889999999999887777777666554 45667889999999
Q ss_pred EEEe--CC---cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECC-----CCC------------EEEEEecCCCCCCC
Q 011452 336 LTFR--NR---TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-----DQD------------LIISYCKADSDDPL 392 (485)
Q Consensus 336 aS~s--D~---TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp-----DG~------------~LaS~s~d~~~d~~ 392 (485)
+|.. ++ +|.|-+-. .+.-.+|-||... +.-++|+| ..+ .+|+||.
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p-----~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq------- 302 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAP-----VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ------- 302 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeeeecCCCc-----eEEEEeChHHhccccccCCccCCCcceEEEEEecC-------
Confidence 9985 44 89998885 6777899999988 88999998 122 5667665
Q ss_pred CcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE
Q 011452 393 AEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY 472 (485)
Q Consensus 393 ~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La 472 (485)
|++|-||+...-+.+..+ |+- .+ ..|..++|+|||-.|.
T Consensus 303 ----DrSlSVW~T~~~RPl~vi--~~l-----------------------f~------------~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 303 ----DRSLSVWNTALPRPLFVI--HNL-----------------------FN------------KSIVDMSWSPDGFSLF 341 (942)
T ss_pred ----CccEEEEecCCCCchhhh--hhh-----------------------hc------------CceeeeeEcCCCCeEE
Confidence 899999997666665444 431 00 2789999999999999
Q ss_pred EecCCCcEEEc
Q 011452 473 TGNRHGLVHVW 483 (485)
Q Consensus 473 Sgs~DgtVklW 483 (485)
-+|.||+|.+-
T Consensus 342 acS~DGtV~~i 352 (942)
T KOG0973|consen 342 ACSLDGTVALI 352 (942)
T ss_pred EEecCCeEEEE
Confidence 99999999874
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-24 Score=216.03 Aligned_cols=290 Identities=13% Similarity=0.114 Sum_probs=215.3
Q ss_pred EEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccce
Q 011452 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (485)
Q Consensus 107 ~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~l 186 (485)
.|++.-.++|++. ++.+.+.| |.+.||-|+--.--..+.++|+ | +|.+||.+++|++.. .
T Consensus 126 rivssFk~~t~~~------~lvre~~G-HkDGiW~Vaa~~tqpi~gtASA----D------hTA~iWs~Esg~CL~---~ 185 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF------RLVRELEG-HKDGIWHVAADSTQPICGTASA----D------HTARIWSLESGACLA---T 185 (481)
T ss_pred hheeeecCCceeE------eehhhhcc-cccceeeehhhcCCcceeeccc----c------cceeEEeecccccee---e
Confidence 3555556666432 23344555 8889999998776667777665 5 799999999999932 1
Q ss_pred eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC----CCeEE--EEEcCCcEEEEEEcC-CceEEEEEcCCCC-ee
Q 011452 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTML--YSISDKNVQEIKISP-GIMLLIFTKASGH-VP 258 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~----~g~~l--~tl~~~~V~~VafSp-g~~ll~sss~~~D-~t 258 (485)
+ .+|.+.+.+|+|+ +.|.+++++|.|+|..||... ..+.. ...++ =.++.-|+ +..-.-+ +...| .|
T Consensus 186 Y-~GH~GSVNsikfh-~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSs--EeE~e~sDe~~~d~d~-~~~sD~~t 260 (481)
T KOG0300|consen 186 Y-TGHTGSVNSIKFH-NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSS--EEEEEHSDEHNRDTDS-SEKSDGHT 260 (481)
T ss_pred e-cccccceeeEEec-cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCc--hhhhhccccccccccc-ccccCCce
Confidence 2 2577788899997 799999999999999999732 11100 00110 00111121 1111111 11112 46
Q ss_pred EEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEE
Q 011452 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 259 IklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~ 338 (485)
|++ +|..|++|...+...+|. ..+++++++++|.|..|||+++|+.++.|.||....+-+.-.|..++++|+
T Consensus 261 iRv-------Pl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 261 IRV-------PLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred eee-------eeeeeeccccceEehhhh-cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe
Confidence 654 788999999999998986 457888889999999999999999999999999999999999999999999
Q ss_pred e-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC-eEEEEe
Q 011452 339 R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG-KCLAKI 414 (485)
Q Consensus 339 s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG-k~l~tl 414 (485)
| |.|.+||||+ =.-+..|.||+.. |.++.|.-| +.++|||+ |.|||+||+.+= ..|+||
T Consensus 333 SrDtTFRLWDFReaI~sV~VFQGHtdt-----VTS~vF~~d-d~vVSgSD-----------DrTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVFQGHTDT-----VTSVVFNTD-DRVVSGSD-----------DRTVKVWDLRNMRSPLATI 395 (481)
T ss_pred ccCceeEeccchhhcceeeeecccccc-----eeEEEEecC-CceeecCC-----------CceEEEeeeccccCcceee
Confidence 9 9999999996 4468899999987 999999887 56899886 799999999763 467888
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+-.+ .+.-|+.+--+.+||---....|||+|+
T Consensus 396 RtdS---------------------------------------~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 396 RTDS---------------------------------------PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ecCC---------------------------------------ccceeEeecCCceEEeccCCceEEEEec
Confidence 7643 5666777777777777777778888773
No 91
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=1.6e-21 Score=186.51 Aligned_cols=302 Identities=16% Similarity=0.283 Sum_probs=225.0
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC-cCcccce
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK-PDAGFAL 186 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~-~~~~~~l 186 (485)
......+..+..+...+ ..+. .|...|.++.|++.+..++.++ .+ ..+.+|+...+. . ...
T Consensus 42 ~~~~~~~~~~~~~~~~~----~~~~-~~~~~i~~~~~~~~~~~~~~~~----~d------~~~~~~~~~~~~~~---~~~ 103 (466)
T COG2319 42 LLALLSDSLVSLPDLSS----LLLR-GHEDSITSIAFSPDGELLLSGS----SD------GTIKLWDLDNGEKL---IKS 103 (466)
T ss_pred EEeecccccccccccch----heee-eccceEEEEEECCCCcEEEEec----CC------CcEEEEEcCCCcee---EEE
Confidence 33444444555554332 1233 3778999999999999988866 33 589999986664 2 112
Q ss_pred eeeccccCceEEEE-eCCCCe-EEEEeeC-CCcEEEeecCC-CeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 187 FESESLKWPGFVEF-DDVNGK-VLTYSAQ-DSIYKVFDLKN-YTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 187 f~~~~~~~~~~V~F-s~pnG~-~Las~s~-D~tiKlWdl~~-g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
+.......+..+.+ + +++. +++..+. |+++++||+.+ +.....+. ...|..++|+|++..++..+. .|.+++
T Consensus 104 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~ 181 (466)
T COG2319 104 LEGLHDSSVSKLALSS-PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS-LDGTIK 181 (466)
T ss_pred EeccCCCceeeEEEEC-CCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC-CCCceE
Confidence 22211112334444 4 5776 6666555 99999999987 66665554 568999999997755544332 479999
Q ss_pred EEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEE-ecccCCCceEEEEEcCCCcEEEEE
Q 011452 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~-~l~gh~~~v~avaFspdg~llaS~ 338 (485)
+|++.+++.+.++.+|...+..++|+ |++..++++ +.|++|++||..+++++. .+.+|...+ --.|+|++.+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 259 (466)
T COG2319 182 LWDLRTGKPLSTLAGHTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASG 259 (466)
T ss_pred EEEcCCCceEEeeccCCCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEe
Confidence 99999999999999999999999998 666645555 899999999999999988 788998875 33899999989988
Q ss_pred e-CCcEEEEeCC-Cc-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 339 R-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 339 s-D~TIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
+ |+++++|+.. .. ++..+.+|..+ |..+.|+|++..+++++. |+++++||+.++.......
T Consensus 260 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 260 SSDGTIRLWDLRSSSSLLRTLSGHSSS-----VLSVAFSPDGKLLASGSS-----------DGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred cCCCcEEEeeecCCCcEEEEEecCCcc-----EEEEEECCCCCEEEEeeC-----------CCcEEEEEcCCCceEEEee
Confidence 8 9999999996 33 36666788666 999999999999999765 6889999999988887776
Q ss_pred --CCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEe-cCCCcEEEccC
Q 011452 416 --ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG-NRHGLVHVWSN 485 (485)
Q Consensus 416 --gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg-s~DgtVklWd~ 485 (485)
+|.. .|..+.|.|++..++.+ ..|+.+++|+.
T Consensus 324 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 324 LKGHEG--------------------------------------PVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred ecccCC--------------------------------------ceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 6651 58888885453566666 78899999973
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-24 Score=232.58 Aligned_cols=244 Identities=15% Similarity=0.153 Sum_probs=192.8
Q ss_pred EEEEe-eCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc--Cc-ccceeeeccccCceEEEEeCCCCeEEEEeeCCCc
Q 011452 141 SLFYN-KNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP--DA-GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 216 (485)
Q Consensus 141 sv~~s-pdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~--~~-~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~t 216 (485)
++-.+ |++++|.|++.| .++++|++..-.- .. ...-+++ |..|+..++.- -+|+.|.|+|.|-|
T Consensus 29 ~Lq~da~~~ryLfTgGRD----------g~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~-~~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRD----------GIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILC-GNGKTLISASSDTT 96 (735)
T ss_pred hccccCCCCceEEecCCC----------ceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhh-cCCCceEEecCCce
Confidence 33343 456679997754 4999999733221 11 1234444 67888887775 58999999999999
Q ss_pred EEEeecCCC--eEEEEEc--CCcEEEEEE-cCCceEEEEEcCCCCeeEEEEecCCC--eEEEEee---------cCCcce
Q 011452 217 YKVFDLKNY--TMLYSIS--DKNVQEIKI-SPGIMLLIFTKASGHVPLKILSIEDG--TVLKSFN---------HLLHRN 280 (485)
Q Consensus 217 iKlWdl~~g--~~l~tl~--~~~V~~Vaf-Spg~~ll~sss~~~D~tIklWdi~tG--~~L~tl~---------~~~~~~ 280 (485)
||||+...+ -|+.+|. .+.|.++|+ -++.-+++++ +-|+.|.|||+++| +++.+|+ |+-..+
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSg--GLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASG--GLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeecccCceeEEec--CCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 999998866 4777774 468999999 5788887764 56799999999999 5555553 444556
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
+++|-. +.+..+++|+-.+-||+||.++++.+.-++||++.|.++..++||+.++|+| |+||||||+. .+|++|+.-
T Consensus 175 YSLA~N-~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 175 YSLAMN-QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred eeeecC-CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe
Confidence 677754 4344555678999999999999999999999999999999999999999999 9999999995 899999999
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEec
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIR 415 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~ 415 (485)
|... ||+++-+|+=+.+.||+. ||.|..=|+.+ .+|...++
T Consensus 254 H~e~-----VWaL~~~~sf~~vYsG~r-----------d~~i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 254 HKEG-----VWALQSSPSFTHVYSGGR-----------DGNIYRTDLRNPAKSTLICK 295 (735)
T ss_pred ccCc-----eEEEeeCCCcceEEecCC-----------CCcEEecccCCchhheEeec
Confidence 9876 999999999999999876 79999888887 45554444
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=5.3e-25 Score=222.79 Aligned_cols=278 Identities=13% Similarity=0.132 Sum_probs=219.6
Q ss_pred EEeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE
Q 011452 129 CFLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~ 207 (485)
+.|.| |.+.|.+++=+|+- .++||+|. | +.++||++.+..+ +..|+. |.+-+..+.++ + .-
T Consensus 60 ~~L~g-HrdGV~~lakhp~~ls~~aSGs~----D------G~VkiWnlsqR~~---~~~f~A-H~G~V~Gi~v~--~-~~ 121 (433)
T KOG0268|consen 60 GSLDG-HRDGVSCLAKHPNKLSTVASGSC----D------GEVKIWNLSQREC---IRTFKA-HEGLVRGICVT--Q-TS 121 (433)
T ss_pred hhccc-cccccchhhcCcchhhhhhcccc----C------ceEEEEehhhhhh---hheeec-ccCceeeEEec--c-cc
Confidence 34545 78889999999987 66777664 4 5999999977766 335554 55666778886 3 45
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEcCC-cEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEE
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~~~-~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f 285 (485)
+.++++|+|||+|-+.. ..++++.++ .+..|.-+- +...+++ + ..|-|||.+.-.++.+|+--.+.+.+|.|
T Consensus 122 ~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTc-G----e~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATC-G----EQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred eEEecCCcceeeeeccC-Ccceeeecccccccccccccccccccc-C----ceeeecccccCCccceeecCCCceeEEec
Confidence 67889999999998754 588888764 567777764 4454443 2 47999999988999999855677889999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCC
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLW 362 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~ 362 (485)
++--...|++++.|++|-|+|++++.+++-.. -.+..+.++|+|++--|++++ |..+-.+|++ -+.+....||...
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA 274 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA 274 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhccccee
Confidence 86444455556799999999999998766542 456889999999999999999 9999999996 7789999999988
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
|.+|.|||-|+-++|||. |.||||+.+..|..--+. |+
T Consensus 275 -----V~dVdfsptG~Efvsgsy-----------DksIRIf~~~~~~SRdiY--ht------------------------ 312 (433)
T KOG0268|consen 275 -----VMDVDFSPTGQEFVSGSY-----------DKSIRIFPVNHGHSRDIY--HT------------------------ 312 (433)
T ss_pred -----EEEeccCCCcchhccccc-----------cceEEEeecCCCcchhhh--hH------------------------
Confidence 999999999999999998 799999998744322111 22
Q ss_pred ccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
++- +.|.+|.||-|.++|+|||.|+.||||.
T Consensus 313 -kRM----------q~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 313 -KRM----------QHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred -hhh----------heeeEEEEeccccEEEecCCCcceeeee
Confidence 111 3899999999999999999999999995
No 94
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=8.7e-23 Score=222.52 Aligned_cols=321 Identities=15% Similarity=0.149 Sum_probs=240.0
Q ss_pred ccceEEEEEe---cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 95 RSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 95 ~s~V~~i~~s---~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
+++|.++.|. .-++|++...|.+.+||++.-+++..+.-.|.+.|...-|-|.-..|++++.| + .|+.+
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D---n--Slk~~--- 315 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD---N--SLKVW--- 315 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC---C--ceeEE---
Confidence 5899999999 45667777779999999996666666666688899999999988888887653 2 23322
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEe----------------------------------------
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYS---------------------------------------- 211 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~---------------------------------------- 211 (485)
+.|-.+|-+ ...-+..+|...|.++.|-..+|..+.|+
T Consensus 316 vfD~~dg~p--R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 316 VFDSGDGVP--RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EeeCCCCcc--hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 223122211 00011112323333333332333333333
Q ss_pred -------------------------eCCCcEEEeecCCCeE-EEEEc-------CCcEEEEEEcC-CceEEEEEcCCCCe
Q 011452 212 -------------------------AQDSIYKVFDLKNYTM-LYSIS-------DKNVQEIKISP-GIMLLIFTKASGHV 257 (485)
Q Consensus 212 -------------------------s~D~tiKlWdl~~g~~-l~tl~-------~~~V~~VafSp-g~~ll~sss~~~D~ 257 (485)
-.+...+.|++.+.+. .++|. +..+.+|++|+ |+.-+++.+. +
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~---G 470 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK---G 470 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC---C
Confidence 4455566666655443 44443 14788999997 7777766544 6
Q ss_pred eEEEEecCCCeEEEEe---ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE
Q 011452 258 PLKILSIEDGTVLKSF---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 258 tIklWdi~tG~~L~tl---~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l 334 (485)
+|-+++++.|-..++| ..|...+..|+.- .-+..+++++.||-++.||..++.++..++- ...+..+.......+
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDL 548 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhh
Confidence 9999999999999999 4777888888752 3466788889999999999999998877642 235677778888999
Q ss_pred EEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 335 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 335 laS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
||.+. |-.|.+.|.. -+.++.|.||.+. +++..|||||++|+|+|+ |+|||+||+.||+|+-
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr-----itd~~FS~DgrWlisasm-----------D~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNR-----ITDMTFSPDGRWLISASM-----------DSTIRTWDLPTGTLID 612 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccc-----eeeeEeCCCCcEEEEeec-----------CCcEEEEeccCcceee
Confidence 99998 8899999995 8899999999988 999999999999999998 7999999999999998
Q ss_pred EecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC-CcEEEccC
Q 011452 413 KIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH-GLVHVWSN 485 (485)
Q Consensus 413 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D-gtVklWd~ 485 (485)
-|.-.. ..++|.|||+|..|||...| .-|.+|.|
T Consensus 613 ~~~vd~---------------------------------------~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 613 GLLVDS---------------------------------------PCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eEecCC---------------------------------------cceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 874322 77899999999999999999 67999976
No 95
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.7e-25 Score=240.60 Aligned_cols=219 Identities=13% Similarity=0.252 Sum_probs=191.6
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
..++.++.|+.|..+-||....-.++.++ |...|.+|.|++...|+.+++. ++|||+||++.++.+++|.||+..+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa--sgtiK~wDleeAk~vrtLtgh~~~~ 115 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA--SGTIKVWDLEEAKIVRTLTGHLLNI 115 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc--CCceeeeehhhhhhhhhhhccccCc
Confidence 35788999999999999998665555554 5568999999987777766554 4899999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
.+|+|+ |.+++.+.++-|..++|||++..-|..+..+|...|..+.|+|||++++++. |.+|||||.. |+++.+|++
T Consensus 116 ~sv~f~-P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 116 TSVDFH-PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS 194 (825)
T ss_pred ceeeec-cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence 999997 7799998899999999999998899999999999999999999999999999 8999999996 999999999
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
|... +.++.|.|..-+|++|+. |+||++||++|-+.+-....-
T Consensus 195 ~e~~-----v~sle~hp~e~Lla~Gs~-----------d~tv~f~dletfe~I~s~~~~--------------------- 237 (825)
T KOG0267|consen 195 HEGK-----VQSLEFHPLEVLLAPGSS-----------DRTVRFWDLETFEVISSGKPE--------------------- 237 (825)
T ss_pred cccc-----ccccccCchhhhhccCCC-----------CceeeeeccceeEEeeccCCc---------------------
Confidence 9966 899999999999999886 899999998876655444332
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCC
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHG 478 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg 478 (485)
+..|.+++|+|||..+++|-.+.
T Consensus 238 -----------------~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 238 -----------------TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -----------------cCCceeeeecCCceeeecCchhh
Confidence 24899999999999999996543
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=2.5e-24 Score=209.92 Aligned_cols=240 Identities=14% Similarity=0.170 Sum_probs=191.9
Q ss_pred cccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccce
Q 011452 90 PFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRC 167 (485)
Q Consensus 90 ~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~ 167 (485)
.|.-|...|++-... --.-|+++-|=|.|+||..||-.|.++. |...|++++|+.|.+.|.+++ .+
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg----~e------ 121 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGG----QE------ 121 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccchhhhccc----hH------
Confidence 344455556665555 3345788899999999999999999875 677899999999999999965 44
Q ss_pred eEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc
Q 011452 168 RSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI 245 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~ 245 (485)
+.+||.++.+-+. +.-+- ++.+.+..|.|-. ..+.+.|++.|+|||+||..+|+.+++|. ..+|.++-+|+++
T Consensus 122 kllrvfdln~p~A----pp~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 122 KLLRVFDLNRPKA----PPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG 196 (334)
T ss_pred HHhhhhhccCCCC----CchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC
Confidence 5788888754443 11111 2445566788874 44566667999999999999999999997 5799999999988
Q ss_pred eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCCceE
Q 011452 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFMTPS 324 (485)
Q Consensus 246 ~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~~v~ 324 (485)
.+++.+-+ .+|+.||..+-.+||.++-- -.|.+... .|.-+.+++|++|.-+.-+|..||+.+... .||...|-
T Consensus 197 ~ilTia~g---ssV~Fwdaksf~~lKs~k~P-~nV~SASL-~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 197 RILTIAYG---SSVKFWDAKSFGLLKSYKMP-CNVESASL-HPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred CEEEEecC---ceeEEeccccccceeeccCc-cccccccc-cCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence 88877554 59999999999999988631 23344444 467789999999999999999999999985 99999999
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCC-Cc
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFR-GE 351 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~-G~ 351 (485)
+|.|+|||.+.|||| ||||+||... |+
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999999999 9999999986 65
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4e-23 Score=213.90 Aligned_cols=268 Identities=13% Similarity=0.142 Sum_probs=212.2
Q ss_pred cccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEe-----------------ecCCcccEEEEEEeeCCCEEE
Q 011452 92 LRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFL-----------------NVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 92 ~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl-----------------~g~~~~~i~sv~~spdg~~La 152 (485)
-.|+-+|.+++++ ..+++++|.||+|--|+..+|+-+..+ ...|...|-+++.||||++||
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 3466667777777 779999999999999999999955211 114677899999999999999
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~ 232 (485)
++. .| +.+.||+..+++.. ..|. +|.+.+..++|- ..-.-|-|+|.|++||+|+++.-..+.++.
T Consensus 219 tgg----~d------~~v~Iw~~~t~ehv---~~~~-ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 219 TGG----RD------RHVQIWDCDTLEHV---KVFK-GHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred ecC----CC------ceEEEecCcccchh---hccc-ccccceeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 854 45 68899999998873 3455 366777789996 344567889999999999998766666775
Q ss_pred C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011452 233 D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF 310 (485)
Q Consensus 233 ~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg 310 (485)
+ ..|.+|....-...++.+ ..|.|++||++.. +..-.|.+|.+.+.+|+|+. ++.+++||+||+|-||++.+.
T Consensus 284 GHqd~v~~IdaL~reR~vtVG--grDrT~rlwKi~e-esqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVG--GRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred CCccceeeechhcccceEEec--cccceeEEEeccc-cceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeeccc
Confidence 4 578888888777777664 3568999999954 55567888888899999974 688999999999999999988
Q ss_pred eeEEecc-c-----------CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C----cEEEEeecCCCCCCCCCeeEEE
Q 011452 311 ELTEVSR-T-----------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLLWHPDCNTNNIY 372 (485)
Q Consensus 311 ~~~~~l~-g-----------h~~~v~avaFspdg~llaS~s-D~TIklWd~~-G----~ll~tl~gH~~~~~~~~v~sva 372 (485)
+++.+.+ . +..||++++..|...+||||| ||-||||-++ | +++..+. -..+ ||+|+
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~Gf-----VNsl~ 432 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGF-----VNSLA 432 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccE-----EEEEE
Confidence 8766541 1 223999999999999999999 9999999995 6 4566554 2334 99999
Q ss_pred ECCCCCEEEEEec
Q 011452 373 ITSDQDLIISYCK 385 (485)
Q Consensus 373 fSpDG~~LaS~s~ 385 (485)
|+++|+.|+.|..
T Consensus 433 f~~sgk~ivagiG 445 (479)
T KOG0299|consen 433 FSNSGKRIVAGIG 445 (479)
T ss_pred EccCCCEEEEecc
Confidence 9999998887753
No 98
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=1.6e-22 Score=217.39 Aligned_cols=322 Identities=13% Similarity=0.185 Sum_probs=248.1
Q ss_pred eEEEEEe--cCEEEEEeCCCeEEeeeccc----CcEEEEeecCCcccEEEEEEee------CC-----CEEEEEEeecCC
Q 011452 98 IIEIVAA--RDIVFALAQSGVCAAFCRET----NQRICFLNVTADEVIRSLFYNK------NN-----DSLITVSVYASD 160 (485)
Q Consensus 98 V~~i~~s--~~~ias~s~dgtiklW~~~t----G~~l~tl~g~~~~~i~sv~~sp------dg-----~~Las~S~d~~~ 160 (485)
-++.+|. .+-|.....|..+.+||+.. |++-..| +|...||+|--=| .. .-.+|+|. |
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs---D 401 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS---D 401 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEecC---C
Confidence 3556666 89999999999999999764 5655444 6888999987654 11 12567673 4
Q ss_pred CCcccceeEEEEeEeccC---Cc------------------------Ccccceeee------ccccCceEEEEeCCCCeE
Q 011452 161 NFSSLRCRSTRIEYIRRG---KP------------------------DAGFALFES------ESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 161 d~stL~~~t~~lw~i~~G---~~------------------------~~~~~lf~~------~~~~~~~~V~Fs~pnG~~ 207 (485)
+ |||||++.-+ +. +++..+|.. +...-+.+|+.+ ||||.
T Consensus 402 ~-------TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqh 473 (1080)
T KOG1408|consen 402 G-------TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQH 473 (1080)
T ss_pred C-------cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCcce
Confidence 4 9999998442 21 122234443 112224468998 89999
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEc-C--CceEEEEEcCCCCeeEEEEecCCCe-EEEEeecCCccee
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKIS-P--GIMLLIFTKASGHVPLKILSIEDGT-VLKSFNHLLHRNK 281 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafS-p--g~~ll~sss~~~D~tIklWdi~tG~-~L~tl~~~~~~~~ 281 (485)
||+|..-|++||+||.+-+.+..+ |..+|.++.|| | +.+||++++ .|.-|.++|+..-- +++|+.+|...+.
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas--rdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS--RDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc--CCceEEEEecccccchhhhhccccccee
Confidence 999999999999999876655444 56689999999 7 778887755 55899999986543 4689999999999
Q ss_pred EEEEEecCC-CEEEEEeCCCcEEEEECCC-CeeEEecccC----CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEE
Q 011452 282 KVDFIEQFN-EKLLVKQENENLQILDVRN-FELTEVSRTE----FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 353 (485)
Q Consensus 282 ~V~f~~~~~-~~lls~s~D~tIkIWDv~t-g~~~~~l~gh----~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll 353 (485)
+|.|...+. -++++++.|+.|-.=-.+. +.-....++| ..+++.++.-|..+++++++ |+.|+|+|++ |+++
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 999976442 5778888998886543331 1111122222 23788899999999999999 9999999997 9999
Q ss_pred EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCC
Q 011452 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYS 433 (485)
Q Consensus 354 ~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~ 433 (485)
++|+|.... ++..-.|...|.|-|||+.|. |.|+-+.|.-+|+|+++..||.
T Consensus 632 k~FKgs~~~--eG~lIKv~lDPSgiY~atScs-----------dktl~~~Df~sgEcvA~m~GHs--------------- 683 (1080)
T KOG1408|consen 632 KSFKGSRDH--EGDLIKVILDPSGIYLATSCS-----------DKTLCFVDFVSGECVAQMTGHS--------------- 683 (1080)
T ss_pred eeecccccC--CCceEEEEECCCccEEEEeec-----------CCceEEEEeccchhhhhhcCcc---------------
Confidence 999986543 233678999999999999997 7999999999999999999997
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.|+.|-|.+|-+.|+|.|.||-|-||.+
T Consensus 684 -----------------------E~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 684 -----------------------EAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred -----------------------hheeeeeecccchhheeecCCceEEEEEC
Confidence 49999999999999999999999999974
No 99
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=1.1e-22 Score=218.47 Aligned_cols=331 Identities=12% Similarity=0.096 Sum_probs=230.6
Q ss_pred ccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCc---------------------E-
Q 011452 70 IRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQ---------------------R- 127 (485)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~---------------------~- 127 (485)
+..-.+.+.|..++++..|..+.. ..-+|||+|+|.+||||.+.-+- .
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~----------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l 250 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGG----------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMIL 250 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCC----------CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeee
Confidence 344466677777777776665511 13479999999999999976433 2
Q ss_pred --EE------EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee----cccc--
Q 011452 128 --IC------FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES----ESLK-- 193 (485)
Q Consensus 128 --l~------tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~----~~~~-- 193 (485)
+. ++.-+|+++|+||-++|.+..|.++|+| .+.-||... -. .-+|.. +..+
T Consensus 251 ~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaD----------ksmiiW~pd-~~----tGiWv~~vRlGe~gg~ 315 (764)
T KOG1063|consen 251 EEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASAD----------KSMIIWKPD-EN----TGIWVDVVRLGEVGGS 315 (764)
T ss_pred eeEEEEEehhhhhcCcccceEEEEEccchhhheecccC----------cceEEEecC-Cc----cceEEEEEEeeccccc
Confidence 22 3444599999999999999888898864 377778631 11 002221 0011
Q ss_pred C--ceEEEEeCCCCeEEEEeeCCCcEEEeecCC-Ce--EEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC
Q 011452 194 W--PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YT--MLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 194 ~--~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~--~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t 266 (485)
. -+..-|+ ||+..+.+-+.-|-.++|--++ .. ++..+++ +.|.+|+++|.|.++.+.+ .|+|-||+---
T Consensus 316 a~GF~g~lw~-~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs--~DQTTRlFa~w- 391 (764)
T KOG1063|consen 316 AGGFWGGLWS-PNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS--LDQTTRLFARW- 391 (764)
T ss_pred ccceeeEEEc-CCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEec--cccceeeeccc-
Confidence 1 1135687 7999888899999999998332 22 2233344 5899999999555555544 56999997643
Q ss_pred Ce-----EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC---------------------------------
Q 011452 267 GT-----VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR--------------------------------- 308 (485)
Q Consensus 267 G~-----~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~--------------------------------- 308 (485)
|+ ++..=+-|.+-..+++|.. .+-+++++.+.+-+|+++.-
T Consensus 392 g~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS 470 (764)
T KOG1063|consen 392 GRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS 470 (764)
T ss_pred ccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc
Confidence 22 2222334666677888863 23445555555555655431
Q ss_pred ----------CCe----eEE-----------------------------ecccCCCceEEEEEcCCCcEEEEEe-CC---
Q 011452 309 ----------NFE----LTE-----------------------------VSRTEFMTPSAFIFLYENQLFLTFR-NR--- 341 (485)
Q Consensus 309 ----------tg~----~~~-----------------------------~l~gh~~~v~avaFspdg~llaS~s-D~--- 341 (485)
+|. +.+ -+-||...|++++.+|+|+++||++ -.
T Consensus 471 nKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e 550 (764)
T KOG1063|consen 471 NKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE 550 (764)
T ss_pred CCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc
Confidence 111 111 1237889999999999999999997 33
Q ss_pred --cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe----EEEEe
Q 011452 342 --TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK----CLAKI 414 (485)
Q Consensus 342 --TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk----~l~tl 414 (485)
-|+||+.. -..++.|++|.+- |..++|||||++|+|.|. |.|+.||+.+.+. ..+.+
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLT-----VT~l~FSpdg~~LLsvsR-----------DRt~sl~~~~~~~~~e~~fa~~ 614 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLT-----VTRLAFSPDGRYLLSVSR-----------DRTVSLYEVQEDIKDEFRFACL 614 (764)
T ss_pred ceEEEEEeccchhhhheecccceE-----EEEEEECCCCcEEEEeec-----------CceEEeeeeecccchhhhhccc
Confidence 68999996 6777889999988 999999999999999998 7999999875322 12224
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.|+ +-||+..|+||++.+||+|+|++|+||.
T Consensus 615 k~Ht--------------------------------------RIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 615 KAHT--------------------------------------RIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred cccc--------------------------------------eEEEEcccCcccceeEEecCCceEEEEe
Confidence 4454 4899999999999999999999999996
No 100
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.2e-22 Score=196.44 Aligned_cols=276 Identities=12% Similarity=0.140 Sum_probs=220.4
Q ss_pred ccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE
Q 011452 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l 172 (485)
..+|.+|.|+ |+.+++.++|-+++|+|..+|+++++++- +.-.|..+-|-.....++.+|. +.|+ ++|.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sSt-k~d~-------tIry 84 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSST-KEDD-------TIRY 84 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccC-CCCC-------ceEE
Confidence 5678888898 99999999999999999999999999986 5556888888666666776664 3344 7777
Q ss_pred eEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEc
Q 011452 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK 252 (485)
Q Consensus 173 w~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss 252 (485)
-++.+.+. ...|. +|-.-+.+++-+| -+....|+|-|+|||+||++.-+|..-++-..-..+||.|.|.+++.+.
T Consensus 85 Lsl~dNky---lRYF~-GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 85 LSLHDNKY---LRYFP-GHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred EEeecCce---EEEcC-CCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEec
Confidence 77777776 34565 4667778899985 5578899999999999999988877666533334589999888887766
Q ss_pred CCCCeeEEEEecCC--CeEEEEeec---CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCc---eE
Q 011452 253 ASGHVPLKILSIED--GTVLKSFNH---LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMT---PS 324 (485)
Q Consensus 253 ~~~D~tIklWdi~t--G~~L~tl~~---~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~---v~ 324 (485)
.. ..|||.|+.. ..+-.+|.- -..+...+.|+ ++|..||.+...+.+.|.|.=+|..++++.+|... +-
T Consensus 160 ~~--~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS-~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 160 GS--ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS-PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred CC--CeEEEEEecccCCCCceeEccCCCCccceeeeEEc-CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 54 4999999863 234455542 23456699997 78999999999999999999999999998877543 35
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN 401 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk 401 (485)
..+|+||++.+++++ ||+|-+|+++ |+.+..+.+ |... +..+.|.|---.+||+| ..+.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~-----~~~~~fnP~~~mf~sa~-------------s~l~ 298 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGP-----VSCVRFNPRYAMFVSAS-------------SNLV 298 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCC-----ccccccCCceeeeeecC-------------ceEE
Confidence 678999999999999 9999999996 999999999 5555 67788999988888875 5788
Q ss_pred EEeC
Q 011452 402 ISNI 405 (485)
Q Consensus 402 lWdl 405 (485)
+|=.
T Consensus 299 fw~p 302 (311)
T KOG1446|consen 299 FWLP 302 (311)
T ss_pred EEec
Confidence 8843
No 101
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=1.3e-23 Score=219.73 Aligned_cols=230 Identities=16% Similarity=0.196 Sum_probs=174.7
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE-E---EEE---cCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEe
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-L---YSI---SDKNVQEIKISP-GIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~-l---~tl---~~~~V~~VafSp-g~~ll~sss~~~D~tIklWd 263 (485)
.+-+.+++|+ |+|-.++|||-|.+||+||++.-.. + ..| ..|.|++++||| +.++|+.+.. -.+||+|
T Consensus 167 tk~Vsal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~---aqakl~D 242 (641)
T KOG0772|consen 167 TKIVSALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS---AQAKLLD 242 (641)
T ss_pred ceEEEEeeec-CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC---cceeEEc
Confidence 3456678997 7999999999999999999975432 1 222 258999999997 6666655332 4899999
Q ss_pred cCCCeEEEEe-------------ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEecc-----cCCCceE
Q 011452 264 IEDGTVLKSF-------------NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTEVSR-----TEFMTPS 324 (485)
Q Consensus 264 i~tG~~L~tl-------------~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-~~~~l~-----gh~~~v~ 324 (485)
- +|..+..| +||...+.+..|.|..-+.+|++++|+|+||||+.+.+ .++++. +--..|.
T Consensus 243 R-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 243 R-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred c-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 5 66665443 46777778889986666889999999999999998653 445542 3345788
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCCCcEE----EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFRGELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~G~ll----~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
+.+|+|||++||++. ||.|.+|+..+.-+ ..=..|... ..|.+|.||+||++|+|-+. |++
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g---~~Itsi~FS~dg~~LlSRg~-----------D~t 387 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG---QDITSISFSYDGNYLLSRGF-----------DDT 387 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC---CceeEEEeccccchhhhccC-----------CCc
Confidence 899999999999999 99999999743322 223456542 23899999999999999876 799
Q ss_pred EEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 400 INISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 400 IklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
+|||||.. .|||.+..+-.+. -.-+.++||||.+.|+||..
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~------------------------------------~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTP------------------------------------FPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eeeeeccccccchhhhcCCCcc------------------------------------CCCCccccCCCceEEEeccc
Confidence 99999965 5778777665420 14456899999999999974
No 102
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-22 Score=221.73 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=188.3
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc-----------------------C--------C
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-----------------------G--------K 179 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~-----------------------G--------~ 179 (485)
++..|++.||++-||+||++||+|+. | +.++||-|.. + +
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGe----D------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGE----D------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCC----C------ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 44469999999999999999999764 4 5999998855 0 0
Q ss_pred c------------------Ccccceeee-------ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-C
Q 011452 180 P------------------DAGFALFES-------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D 233 (485)
Q Consensus 180 ~------------------~~~~~lf~~-------~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~ 233 (485)
. ......|.. +|..-+..+++| ...+|.|+|.|+|||||++..-+||.+|. .
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn 409 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFSHN 409 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEecC
Confidence 0 000011111 244445567887 35688899999999999999999999995 5
Q ss_pred CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee
Q 011452 234 KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL 312 (485)
Q Consensus 234 ~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~ 312 (485)
+.|.+|+|+| |..+.+++ +-|+.||||+|.+-++..-.. ...-|.+|.|. |+|+..++|+.+|.+++|+...-++
T Consensus 410 dfVTcVaFnPvDDryFiSG--SLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~-PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISG--SLDGKVRLWSISDKKVVDWND-LRDLITAVCYS-PDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred CeeEEEEecccCCCcEeec--ccccceEEeecCcCeeEeehh-hhhhheeEEec-cCCceEEEEEeccEEEEEEccCCeE
Confidence 7899999998 55555553 567999999998866654333 23678899997 7799999999999999999997766
Q ss_pred EEecc---------cCCCceEEEEEcCCCc--EEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 313 TEVSR---------TEFMTPSAFIFLYENQ--LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 313 ~~~l~---------gh~~~v~avaFspdg~--llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
..... .|. .|+.+-|.|... +|+|..|..|+|+|.+ -+++..|.|+.... .=....|++||++|
T Consensus 486 ~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~---SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS---SQISASFSSDGKHI 561 (712)
T ss_pred EEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC---cceeeeEccCCCEE
Confidence 44431 133 799999976544 7888779999999995 88999999987652 22578999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+|+|. |.-|.||+.
T Consensus 562 Vs~se-----------Ds~VYiW~~ 575 (712)
T KOG0283|consen 562 VSASE-----------DSWVYIWKN 575 (712)
T ss_pred EEeec-----------CceEEEEeC
Confidence 99996 799999997
No 103
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.3e-22 Score=201.30 Aligned_cols=298 Identities=13% Similarity=0.149 Sum_probs=212.1
Q ss_pred EEeeecccCcEE-----EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeecc
Q 011452 117 CAAFCRETNQRI-----CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (485)
Q Consensus 117 iklW~~~tG~~l-----~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~ 191 (485)
.+-|+.++.+.. .+|.+ |...|.+++||.||+.|||++ +| |+|+||++++=...+-.-+-..-.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKg-H~~~vt~~~FsSdGK~lat~~----~D------r~Ir~w~~~DF~~~eHr~~R~nve 131 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKG-HKKEVTDVAFSSDGKKLATIS----GD------RSIRLWDVRDFENKEHRCIRQNVE 131 (420)
T ss_pred hhhhcccCCCcccchhhhhhhc-cCCceeeeEEcCCCceeEEEe----CC------ceEEEEecchhhhhhhhHhhcccc
Confidence 445655544432 35666 888899999999999999988 45 799999985411100000111224
Q ss_pred ccCceEEEEeCCCCe-EEEEeeCCCcEEEeecC---CCeEEEE-Ec----------CCcEEEEEEcCCceEEEEEcCCCC
Q 011452 192 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLK---NYTMLYS-IS----------DKNVQEIKISPGIMLLIFTKASGH 256 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~---~g~~l~t-l~----------~~~V~~VafSpg~~ll~sss~~~D 256 (485)
..||..|.|. ||-+ ++++.....++.++-+. .|..-++ ++ .-.|..+-+-.++..+.+++ .|
T Consensus 132 ~dhpT~V~Fa-pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas--~d 208 (420)
T KOG2096|consen 132 YDHPTRVVFA-PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS--LD 208 (420)
T ss_pred CCCceEEEEC-CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEec--CC
Confidence 5688899998 5654 55666777888888764 2332211 11 12456666667777777655 45
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC---CCeeEE-----ecccCCCceEEEEE
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---NFELTE-----VSRTEFMTPSAFIF 328 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~---tg~~~~-----~l~gh~~~v~avaF 328 (485)
.+|-||++. |+.|.++...+..+...+.+ |+|..+++++.---|++|.+- .|+..+ .|.||+..|.+++|
T Consensus 209 t~i~lw~lk-Gq~L~~idtnq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF 286 (420)
T KOG2096|consen 209 TKICLWDLK-GQLLQSIDTNQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF 286 (420)
T ss_pred CcEEEEecC-CceeeeeccccccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence 899999997 99999998655555566654 788888888999999999853 344332 36899999999999
Q ss_pred cCCCcEEEEEe-CCcEEEEeCC-----Cc---EEEEee--cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 329 LYENQLFLTFR-NRTVAVWNFR-----GE---LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~-----G~---ll~tl~--gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
||+.+.++|.| ||++||||.+ |+ +++++. -|..- ..---++.||.|+.||-+..
T Consensus 287 sn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag---~~p~RL~lsP~g~~lA~s~g------------ 351 (420)
T KOG2096|consen 287 SNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG---SEPVRLELSPSGDSLAVSFG------------ 351 (420)
T ss_pred CCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC---CCceEEEeCCCCcEEEeecC------------
Confidence 99999999999 9999999964 22 333331 11111 01126999999999998764
Q ss_pred CeEEEEeCCCCeEEEEecC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 398 GSINISNILTGKCLAKIRA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
.+|+++.-++|+-+-+++. |. ..|.+++|+|||++|||.+
T Consensus 352 s~l~~~~se~g~~~~~~e~~h~--------------------------------------~~Is~is~~~~g~~~atcG- 392 (420)
T KOG2096|consen 352 SDLKVFASEDGKDYPELEDIHS--------------------------------------TTISSISYSSDGKYIATCG- 392 (420)
T ss_pred CceEEEEcccCccchhHHHhhc--------------------------------------CceeeEEecCCCcEEeeec-
Confidence 6899999999987777654 43 3899999999999999997
Q ss_pred CCcEEEcc
Q 011452 477 HGLVHVWS 484 (485)
Q Consensus 477 DgtVklWd 484 (485)
|..|+|-.
T Consensus 393 dr~vrv~~ 400 (420)
T KOG2096|consen 393 DRYVRVIR 400 (420)
T ss_pred ceeeeeec
Confidence 66677654
No 104
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2.3e-22 Score=224.06 Aligned_cols=281 Identities=12% Similarity=0.133 Sum_probs=219.7
Q ss_pred cccccc-eEEEEEe--cCEEEEEe--CCCeEEeeeccc------------CcEEEEeecCCcccEEEEEEeeCCCEEEEE
Q 011452 92 LRKRSK-IIEIVAA--RDIVFALA--QSGVCAAFCRET------------NQRICFLNVTADEVIRSLFYNKNNDSLITV 154 (485)
Q Consensus 92 ~~~~s~-V~~i~~s--~~~ias~s--~dgtiklW~~~t------------G~~l~tl~g~~~~~i~sv~~spdg~~Las~ 154 (485)
+.|... |.+|... +..+|+++ .|+.+++|+.+. -+.||++.. |...|.+|.|+|||++||++
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCCeEeec
Confidence 334333 4555555 89999999 999999998662 346788876 99999999999999999985
Q ss_pred EeecCCCCcccceeEEEEeEeccCCcCcccceeee-----------------ccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 155 SVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-----------------ESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 155 S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-----------------~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
| || +.+-||.... . .....|.. +|-.-+-.|+++ ||+.+|||+|-|++|
T Consensus 88 S----DD------~~v~iW~~~~-~--~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 88 S----DD------RLVMIWERAE-I--GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSV 153 (942)
T ss_pred c----Cc------ceEEEeeecc-c--CCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceE
Confidence 5 78 8999999542 1 11122321 133334468998 799999999999999
Q ss_pred EEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc------ceeEEEEEecC
Q 011452 218 KVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH------RNKKVDFIEQF 289 (485)
Q Consensus 218 KlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~------~~~~V~f~~~~ 289 (485)
-|||..+.+++.++.+| .|-.|.|-|=|+++++.+ +|+|||+|.+.+-.+.++++++-. +...+.|+ ||
T Consensus 154 iiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS-PD 230 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS-PD 230 (942)
T ss_pred EEEccccceeeeeeecccccccceEECCccCeeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccC-CC
Confidence 99999999988888654 799999999666666655 459999999888778888875543 23478886 88
Q ss_pred CCEEEEE----eCCCcEEEEECCCCeeEEecccCCCceEEEEEcC-----CCc------------EEEEEe-CCcEEEEe
Q 011452 290 NEKLLVK----QENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-----ENQ------------LFLTFR-NRTVAVWN 347 (485)
Q Consensus 290 ~~~lls~----s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-----dg~------------llaS~s-D~TIklWd 347 (485)
|++|++. +.-.++.|.+-.+-+.-..|.||...+..++|+| ..+ .+|+|+ |++|-||+
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 9999885 3557999999999999999999999999999987 111 678889 99999999
Q ss_pred CC-CcEE---EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 348 FR-GELV---TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 348 ~~-G~ll---~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
.- -+.+ +.|-++. |.++.+||||-.|.-+|. ||+|.+..++..
T Consensus 311 T~~~RPl~vi~~lf~~S-------I~DmsWspdG~~LfacS~-----------DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 311 TALPRPLFVIHNLFNKS-------IVDMSWSPDGFSLFACSL-----------DGTVALIHFEEK 357 (942)
T ss_pred cCCCCchhhhhhhhcCc-------eeeeeEcCCCCeEEEEec-----------CCeEEEEEcchH
Confidence 83 4432 2333443 999999999999999987 799999988753
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=5.2e-22 Score=204.62 Aligned_cols=264 Identities=14% Similarity=0.137 Sum_probs=218.8
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
...+++|+.|.++-++|..+++.|.++.| |.-.|.+|-|+|+.+.++++|++ ..++||.+..-..-
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~~v~~aSad----------~~i~vws~~~~s~~--- 296 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLDTVITASAD----------EIIRVWSVPLSSEP--- 296 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchhheeecCCc----------ceEEeeccccccCc---
Confidence 47899999999999999999999999988 88899999999999999998853 48999997544431
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
.+.. -+-..+.++.-. |+|.||.++|.|+++-+-|+.+|.++....+ -.+.+.+|+|||.++.++. .|+.||
T Consensus 297 ~~~~-~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt--~d~~vk 372 (506)
T KOG0289|consen 297 TSSR-PHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT--PDGVVK 372 (506)
T ss_pred cccc-cccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC--CCceEE
Confidence 1111 122334567775 8999999999999999999999998766654 2589999999999887754 558999
Q ss_pred EEecCCCeEEEEeecCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeeEEecc-cCCCceEEEEEcCCCcEEEEE
Q 011452 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFELTEVSR-TEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg~~~~~l~-gh~~~v~avaFspdg~llaS~ 338 (485)
|||+..+..+..|.+|.+.|.+|+|++ |++.++ +.+|+.|+|||++.-+..+++. .....|.++.|-+-|++|+.+
T Consensus 373 iwdlks~~~~a~Fpght~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPGHTGPVKAISFSE--NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEcCCccccccCCCCCCceeEEEecc--CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 999999999999999999999999985 666555 5799999999999887766653 334479999999999999999
Q ss_pred e-CCcEEEEeC---CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 339 R-NRTVAVWNF---RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 339 s-D~TIklWd~---~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
+ |=+|-+.+- +..++..+..|... .+.|.|..+-++|+++|+ |...||.-
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~-----st~v~Fg~~aq~l~s~sm-----------d~~l~~~a 504 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGL-----STGVRFGEHAQYLASTSM-----------DAILRLYA 504 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccc-----cceeeecccceEEeeccc-----------hhheEEee
Confidence 7 777777774 36788899999866 789999999999999998 67777764
No 106
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.8e-23 Score=208.70 Aligned_cols=299 Identities=15% Similarity=0.190 Sum_probs=220.9
Q ss_pred cccccchhHHHhhhccccccccccCCCCcccccccccccccceEEEEEec-CEEEEEeCCCeEEeeecccCcEEEEeecC
Q 011452 56 RAFTMTDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAAR-DIVFALAQSGVCAAFCRETNQRICFLNVT 134 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~-~~ias~s~dgtiklW~~~tG~~l~tl~g~ 134 (485)
||..++---++|-.==+ ...+.|..-++|.+-.|. . ..+||||.||.|+|||+.+-+|+.++..
T Consensus 43 RALNAtKleR~fakPFv-~~L~gHrdGV~~lakhp~-------------~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A- 107 (433)
T KOG0268|consen 43 RALNATKLERVFAKPFV-GSLDGHRDGVSCLAKHPN-------------KLSTVASGSCDGEVKIWNLSQRECIRTFKA- 107 (433)
T ss_pred HHhhhHHHHHHhhccch-hhccccccccchhhcCcc-------------hhhhhhccccCceEEEEehhhhhhhheeec-
Confidence 45566666666665322 445899998888888777 3 4799999999999999999999999876
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeec-cccCceEEEEeCCCCeEEEEeeC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
|++.|+.|.+.. ...++++ +| +|++.|-+ .|.+.. .+-.. .+--+....+ +.+.|+|++
T Consensus 108 H~G~V~Gi~v~~--~~~~tvg----dD------KtvK~wk~-~~~p~~---tilg~s~~~gIdh~~~----~~~FaTcGe 167 (433)
T KOG0268|consen 108 HEGLVRGICVTQ--TSFFTVG----DD------KTVKQWKI-DGPPLH---TILGKSVYLGIDHHRK----NSVFATCGE 167 (433)
T ss_pred ccCceeeEEecc--cceEEec----CC------cceeeeec-cCCcce---eeeccccccccccccc----cccccccCc
Confidence 999999999988 4556765 56 79999996 554311 11111 1111112222 346677774
Q ss_pred CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC
Q 011452 214 DSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
.|-|||..--..+.++. .+.|.+|+|+|.-.-+.++ ..+|+.|-|+|+.++++|+...- .-+...|.|+| ..-
T Consensus 168 --~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas-~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-eaf 242 (433)
T KOG0268|consen 168 --QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILAS-CASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EAF 242 (433)
T ss_pred --eeeecccccCCccceeecCCCceeEEecCCCcchheee-eccCCceEEEecccCCccceeee-eccccceecCc-ccc
Confidence 58899987666666665 5789999999933322221 23568999999999999987652 24567899985 566
Q ss_pred EEEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCe
Q 011452 292 KLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNT 368 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v 368 (485)
.+.++++|.++-.+|++. .+.+.+..+|...|..|.|||-|+-|+||| |+||+|+.++ |.---.. |+-- ...|
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkR--Mq~V 318 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKR--MQHV 318 (433)
T ss_pred ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhh--hhee
Confidence 777789999999999997 457888899999999999999999999999 9999999996 5432221 1110 1128
Q ss_pred eEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 369 ~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
..|.+|-|.++|+|||+ |+.||||-..--+
T Consensus 319 ~~Vk~S~Dskyi~SGSd-----------d~nvRlWka~Ase 348 (433)
T KOG0268|consen 319 FCVKYSMDSKYIISGSD-----------DGNVRLWKAKASE 348 (433)
T ss_pred eEEEEeccccEEEecCC-----------Ccceeeeecchhh
Confidence 99999999999999996 7999999754333
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.7e-22 Score=196.57 Aligned_cols=229 Identities=14% Similarity=0.182 Sum_probs=178.7
Q ss_pred CCCeEEEEeeCCCcEEEeecCC-C--eEEEEEcC--CcEEEEEEc-C-CceEEEEEcCCCCeeEEEEecCCCeEE--EEe
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKN-Y--TMLYSISD--KNVQEIKIS-P-GIMLLIFTKASGHVPLKILSIEDGTVL--KSF 273 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~-g--~~l~tl~~--~~V~~VafS-p-g~~ll~sss~~~D~tIklWdi~tG~~L--~tl 273 (485)
--|+.||+++.|++|||+.+.+ + +++.+|.+ .+|+.|+|- | -|.+|+++ +.|+.|-||.-++|+-- ..+
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc--sYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC--SYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEe--ecCceEEEEecCCCchhhhhhh
Confidence 3599999999999999999974 3 46777765 589999999 7 44455554 46799999998888543 455
Q ss_pred ecCCcceeEEEEEecCCCE-EEEEeCCCcEEEEECCCC-e--eEEecccCCCceEEEEEcCC---C-----------cEE
Q 011452 274 NHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNF-E--LTEVSRTEFMTPSAFIFLYE---N-----------QLF 335 (485)
Q Consensus 274 ~~~~~~~~~V~f~~~~~~~-lls~s~D~tIkIWDv~tg-~--~~~~l~gh~~~v~avaFspd---g-----------~ll 335 (485)
..|...+.+|+|.|-.-+. |+.++.||+|.|.+.++. . ..+....|...|++|.+.|- | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 6788889999997543344 445689999999998865 2 23445679999999999886 6 679
Q ss_pred EEEe-CCcEEEEeCC-C--cEEEEeecCCCCCCCCCeeEEEECCCC----CEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 336 LTFR-NRTVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 336 aS~s-D~TIklWd~~-G--~ll~tl~gH~~~~~~~~v~svafSpDG----~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
+|++ |.+||||+++ + ++-.+|++|.+| |+.||+.|.- .+|||+|. ||++-||-..
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw-----VRDVAwaP~~gl~~s~iAS~Sq-----------Dg~viIwt~~- 241 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGHKDW-----VRDVAWAPSVGLPKSTIASCSQ-----------DGTVIIWTKD- 241 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhcchh-----hhhhhhccccCCCceeeEEecC-----------CCcEEEEEec-
Confidence 9999 9999999996 4 466789999999 9999999964 78999987 7999999753
Q ss_pred CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 408 GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 408 Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.....+. ..+++|-..|+.+.||+.|+.|+-++.|+.|.||.
T Consensus 242 -~e~e~wk~---------------------------------tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 242 -EEYEPWKK---------------------------------TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred -CccCcccc---------------------------------cccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 11111110 11222334899999999999999999999999994
No 108
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=7.9e-22 Score=203.30 Aligned_cols=232 Identities=14% Similarity=0.189 Sum_probs=198.3
Q ss_pred ceEEEEeCCCC--eEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 195 PGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 195 ~~~V~Fs~pnG--~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
++..+|+ +.. ..+.+|+.|.++-++|-...+.+.++.|+ .|.+|.|+|+...+++++. |..|+||+..+..+-
T Consensus 220 pgi~ald-~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa--d~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALD-IIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA--DEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEe-ecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC--cceEEeeccccccCc
Confidence 4456665 344 57788999999999999999999888875 6999999998888887654 489999999888888
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc--CCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT--EFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g--h~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
....-|...|..+... |.|++|++++.|++.-.-|+++|.++..-.. -...+.+.+|.|||-+|+++. |+.|||||
T Consensus 297 ~~~~~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 8888888888888875 7899999999999999999999998776543 234689999999999999999 99999999
Q ss_pred CC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCccc
Q 011452 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENEC 426 (485)
Q Consensus 348 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~ 426 (485)
+. +.-+..|.||... |.+|+|+-+|-+||+++. |+.|+|||+.--+..++|.-.+.
T Consensus 376 lks~~~~a~Fpght~~-----vk~i~FsENGY~Lat~ad-----------d~~V~lwDLRKl~n~kt~~l~~~------- 432 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGP-----VKAISFSENGYWLATAAD-----------DGSVKLWDLRKLKNFKTIQLDEK------- 432 (506)
T ss_pred cCCccccccCCCCCCc-----eeEEEeccCceEEEEEec-----------CCeEEEEEehhhcccceeecccc-------
Confidence 95 8899999999988 999999999999999996 78899999986666677754331
Q ss_pred ccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 427 SCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
..|.+|.|++-|+.|+.++.|=+|++.
T Consensus 433 ------------------------------~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 433 ------------------------------KEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred ------------------------------ccceeEEEcCCCCeEEeecceeEEEEE
Confidence 168899999999999999988887764
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1e-20 Score=206.42 Aligned_cols=304 Identities=14% Similarity=0.163 Sum_probs=239.8
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccccee
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf 187 (485)
|+.|++.|-++|||+.+|+.++++++ +...|.++-=+|==+-+|.+- .+ ++|-|.+++.++.. .-|
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~-~~s~IT~ieqsPaLDVVaiG~----~~------G~ViifNlK~dkil---~sF 240 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQE-FFSRITAIEQSPALDVVAIGL----EN------GTVIIFNLKFDKIL---MSF 240 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEecc-cccceeEeccCCcceEEEEec----cC------ceEEEEEcccCcEE---EEE
Confidence 67799999999999999999999998 557899999999877666643 45 69999999998872 245
Q ss_pred eeccccCceEEEEeCCCCe-EEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEEEE-
Q 011452 188 ESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKIL- 262 (485)
Q Consensus 188 ~~~~~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIklW- 262 (485)
++. .+.+..++|. .||. +||+|..-|.+-+|||+.-+++..+. ...|....|-|+.-++.+++.| +.+|+|
T Consensus 241 k~d-~g~VtslSFr-tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D--nSlk~~v 316 (910)
T KOG1539|consen 241 KQD-WGRVTSLSFR-TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD--NSLKVWV 316 (910)
T ss_pred Ecc-ccceeEEEec-cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC--CceeEEE
Confidence 442 4567789997 5775 56777777999999999887765553 4578889999999888886654 788888
Q ss_pred -ecCCC--eEEEEeecCCcceeEEEEEe----------------------------------------------------
Q 011452 263 -SIEDG--TVLKSFNHLLHRNKKVDFIE---------------------------------------------------- 287 (485)
Q Consensus 263 -di~tG--~~L~tl~~~~~~~~~V~f~~---------------------------------------------------- 287 (485)
|..+| ..|+.=.||..+-..|.|..
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 54444 23443334433322222210
Q ss_pred -------------------------------------------------------------cCCCEEEEEeCCCcEEEEE
Q 011452 288 -------------------------------------------------------------QFNEKLLVKQENENLQILD 306 (485)
Q Consensus 288 -------------------------------------------------------------~~~~~lls~s~D~tIkIWD 306 (485)
+.|..-++|...|+|-++|
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 1111244556789999999
Q ss_pred CCCCeeEEec---ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEee-cCCCCCCCCCeeEEEECCCCCEE
Q 011452 307 VRNFELTEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 307 v~tg~~~~~l---~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDG~~L 380 (485)
+++|.....+ ..|.+.|..++.---+++++|++ ||-+|.||+. ..++.++. +|. +..+..+....++
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~-------~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS-------ITGIVYHRVSDLL 549 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC-------cceeeeeehhhhh
Confidence 9999988888 47999999999999999999999 9999999996 77777775 332 5677778888899
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeE
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDIT 460 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 460 (485)
|.++. |=.|++.|+.|-+.++.|.||++ .|+
T Consensus 550 a~~~d-----------df~I~vvD~~t~kvvR~f~gh~n--------------------------------------rit 580 (910)
T KOG1539|consen 550 AIALD-----------DFSIRVVDVVTRKVVREFWGHGN--------------------------------------RIT 580 (910)
T ss_pred hhhcC-----------ceeEEEEEchhhhhhHHhhcccc--------------------------------------cee
Confidence 99886 78999999999999999999985 899
Q ss_pred EEEEcCCCCEEEEecCCCcEEEccC
Q 011452 461 ALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 461 sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+++|||||+.|+|++.|++||+||+
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEec
Confidence 9999999999999999999999995
No 110
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.4e-23 Score=223.05 Aligned_cols=218 Identities=12% Similarity=0.234 Sum_probs=181.1
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEE
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI 286 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~ 286 (485)
.++....+-..|+||.+. ++.|...|...++-..+..++.+ ..|..+-||.+..-.++..|.+|...+.+|.|.
T Consensus 6 ~~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~G--g~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTG--GEDEKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred ccceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccC--CCceeeccccccCCchhheeeccCCcceeeecC
Confidence 344444556678888543 22244456666654444444443 244677799987767788899999999999997
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCC
Q 011452 287 EQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP 364 (485)
Q Consensus 287 ~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~ 364 (485)
. +...|++|+.|+|||+||+..++.+++|.||...+.+|.|+|-+.++|+++ |.-+++||.+ -.|.+++.+|..-
T Consensus 80 ~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v-- 156 (825)
T KOG0267|consen 80 T-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV-- 156 (825)
T ss_pred c-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce--
Confidence 3 344555567999999999999999999999999999999999999999999 9999999997 7799999998755
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
|+.+.|+|||.+++++.. |++|||||+..|+.+.+|++|+.
T Consensus 157 ---v~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~~~ef~~~e~------------------------- 197 (825)
T KOG0267|consen 157 ---VDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKLSKEFKSHEG------------------------- 197 (825)
T ss_pred ---eEEEeecCCCceeeccCC-----------cceeeeecccccccccccccccc-------------------------
Confidence 899999999999999875 79999999999999999999983
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|.+|.|+|---.|++||.|+||++||+
T Consensus 198 -------------~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 198 -------------KVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred -------------cccccccCchhhhhccCCCCceeeeecc
Confidence 7888999999999999999999999985
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=9.8e-22 Score=205.27 Aligned_cols=282 Identities=13% Similarity=0.098 Sum_probs=225.3
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee---ccccCceEEEEeCCC
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVN 204 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~pn 204 (485)
+.+|+ |.++|-.+.+|-..+.+-|++ . +.|+|||| .+.-+. .++-+. ..-.++.++... ||
T Consensus 413 ~~tL~--HGEvVcAvtIS~~trhVyTgG-----k------gcVKVWdi-s~pg~k-~PvsqLdcl~rdnyiRSckL~-pd 476 (705)
T KOG0639|consen 413 INTLA--HGEVVCAVTISNPTRHVYTGG-----K------GCVKVWDI-SQPGNK-SPVSQLDCLNRDNYIRSCKLL-PD 476 (705)
T ss_pred hhhhc--cCcEEEEEEecCCcceeEecC-----C------CeEEEeec-cCCCCC-CccccccccCcccceeeeEec-CC
Confidence 45554 789999999999999988855 2 69999998 222211 121111 123566788886 79
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEE--EEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTML--YSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l--~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
|+.|..|+.-.|+-||||..-+.. ..+. +-..+++++|||.+++.++- .|+.|.|||+++..+++.|+||++..
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFscc--sdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeec--cCCcEEEEEcccceeeecccCCCCCc
Confidence 999999999999999999876642 2222 34688999999999887654 45899999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecC
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDH 359 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH 359 (485)
.+|+.+ .+|.+|-+|+-|+|||.||++++..++.- .-...|.++-..|.+..||.|- ++.|.|-..+|...+-|.-|
T Consensus 555 scIdis-~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlh 632 (705)
T KOG0639|consen 555 SCIDIS-KDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLH 632 (705)
T ss_pred eeEEec-CCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccc
Confidence 999976 78999999999999999999988755421 1134788888899999999999 99998888888877777666
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccc
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNV 439 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 439 (485)
.. | |.++-|.+-|++.+|.++ |+-++.|..--|..+...+..+
T Consensus 633 eS----c-VLSlKFa~cGkwfvStGk-----------DnlLnawrtPyGasiFqskE~S--------------------- 675 (705)
T KOG0639|consen 633 ES----C-VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGASIFQSKESS--------------------- 675 (705)
T ss_pred cc----E-EEEEEecccCceeeecCc-----------hhhhhhccCccccceeeccccC---------------------
Confidence 54 4 899999999999999988 7999999877777766555432
Q ss_pred cccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 440 KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|.+...|-|.++|||||-|+...|+.
T Consensus 676 ------------------sVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 676 ------------------SVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ------------------cceeeeeccCceEEEecCCCcceEEEE
Confidence 789999999999999999998777664
No 112
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=3.6e-21 Score=192.31 Aligned_cols=278 Identities=11% Similarity=0.122 Sum_probs=221.1
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecc---------------c--C-cEEEEeecCCcccEEEEEEeeCCCEEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRE---------------T--N-QRICFLNVTADEVIRSLFYNKNNDSLIT 153 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~---------------t--G-~~l~tl~g~~~~~i~sv~~spdg~~Las 153 (485)
|.++++.-+|+ |..+|+||-|-.||+.|.+ + + -.|+||-- |.+.|..|.|.|-...||+
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPRETILIS 189 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecchhheEEe
Confidence 78889999999 9999999999999999987 1 1 35888887 7778999999999999999
Q ss_pred EEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-c
Q 011452 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S 232 (485)
Q Consensus 154 ~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~ 232 (485)
+|. | .+++|.|+..-....+++.|+. ...+.+++|. |.|.+|+-|.+-.++||+|++|++|..+- +
T Consensus 190 ~sr----D------~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 190 GSR----D------NTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred ccC----C------CeEEEEecccHHHHHHHHHhhc--cceeeeEeec-CCCceEEEecCCCceeEEeccceeEeeecCc
Confidence 774 3 5999999844333445667775 2345699997 89999999999999999999999987654 2
Q ss_pred ----CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCC-cceeEEEEEecCCCEEEEEeCCCcEEEEE
Q 011452 233 ----DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLL-HRNKKVDFIEQFNEKLLVKQENENLQILD 306 (485)
Q Consensus 233 ----~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~-~~~~~V~f~~~~~~~lls~s~D~tIkIWD 306 (485)
...|.+|.+|+.+.+.+++| .|+-|||||--.++|+.+|. .|. ..+-+..|. -++.++|+++.|.++|||.
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred ccccccceeEEEecCCccEEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeee
Confidence 35799999998666666655 45899999999999999996 332 346678885 5678899999999999999
Q ss_pred CCCCeeEEecccC-----CCceEEEEEcCCCcEEEEEe--CCcEEEEeCC-CcEEEEe-ecCCCCCCCCCeeEEEECCCC
Q 011452 307 VRNFELTEVSRTE-----FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSF-EDHLLWHPDCNTNNIYITSDQ 377 (485)
Q Consensus 307 v~tg~~~~~l~gh-----~~~v~avaFspdg~llaS~s--D~TIklWd~~-G~ll~tl-~gH~~~~~~~~v~svafSpDG 377 (485)
+.+|+++++..|- +..-...+|.....+++.-. -+.+--||.+ +..+..+ -||... ++-|.-||.+
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-----~R~i~HSP~~ 408 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-----VRWIVHSPVE 408 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-----ceEEEeCCCC
Confidence 9999999987553 22233345777777666554 5567789996 6554443 378877 8999999999
Q ss_pred CEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 378 DLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 378 ~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
--.+++|. |-.+|.|-
T Consensus 409 p~FmTcsd-----------D~raRFWy 424 (430)
T KOG0640|consen 409 PAFMTCSD-----------DFRARFWY 424 (430)
T ss_pred Cceeeecc-----------cceeeeee
Confidence 99999986 79999995
No 113
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=9.8e-21 Score=189.36 Aligned_cols=234 Identities=12% Similarity=0.169 Sum_probs=181.2
Q ss_pred eeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc---eEEEEEcCCCCeeE
Q 011452 186 LFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGI---MLLIFTKASGHVPL 259 (485)
Q Consensus 186 lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~---~ll~sss~~~D~tI 259 (485)
+|.. .|...+.+||- +|.++||||.|-||+|+|+..-..+.++. ...|.++.|.|.- .|+++ +.|+.|
T Consensus 36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~---sdDG~i 109 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSG---SDDGHI 109 (362)
T ss_pred cccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeee---cCCCcE
Confidence 4543 24455556775 58999999999999999999888777774 5689999999644 55543 345899
Q ss_pred EEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecc-cCCCceEEEEEcCCCcEEEE
Q 011452 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSR-TEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 260 klWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~-gh~~~v~avaFspdg~llaS 337 (485)
-+|+....+++++|+.|.+.|..|+.. | .++|+.+ +.|+.+|+||+-+|+--.+++ .|. ...|.|+|.|..|+-
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiH-P-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIH-P-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEec-C-CCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEE
Confidence 999999999999999999999999987 4 4566665 999999999999887533332 233 344889999999998
Q ss_pred EeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 338 FRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 338 ~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
..-+.|-||.++ ..+...++... . +..+-|- ++.+|+.|.. |+.|++||-.++.++..+.+
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~-r-----~l~~~~l-~~~~L~vG~d-----------~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPK-R-----ILCATFL-DGSELLVGGD-----------NEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred EeccEEEEEecccHhHhhhhhccc-c-----ceeeeec-CCceEEEecC-----------CceEEEeccCCCccceeeec
Confidence 886679999996 66655554331 1 2333332 5667777764 79999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE--EcCCCCEEEEecCCCcEEEccC
Q 011452 417 SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF--YDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 417 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~--fspDg~~LaSgs~DgtVklWd~ 485 (485)
|.+ .|-+++ -.|++.+|+|+|.||.|+|||+
T Consensus 248 H~~--------------------------------------RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 248 HEN--------------------------------------RVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred chh--------------------------------------heeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 984 455554 4789999999999999999984
No 114
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=6.8e-20 Score=177.12 Aligned_cols=240 Identities=13% Similarity=0.169 Sum_probs=191.7
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecC------CCeE--------E--EEEc-CCcEEEEEEcCCceEEEEEcCCC
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYTM--------L--YSIS-DKNVQEIKISPGIMLLIFTKASG 255 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~------~g~~--------l--~tl~-~~~V~~VafSpg~~ll~sss~~~ 255 (485)
..+.+|+|. |+|.+-|-||..+|.||-... .+.. + .+-| ...|.++++||.+.|++++ ++
T Consensus 33 qairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg--sn 109 (350)
T KOG0641|consen 33 QAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG--SN 109 (350)
T ss_pred hheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec--CC
Confidence 456799997 899999999999999987532 1111 1 1111 2479999999988887775 46
Q ss_pred CeeEEEEecCCCeEE-----EEeecCCcceeEEEEEec--CCCEEEEE-e-CCCcEEEEECCCCeeEEecccCCCceEEE
Q 011452 256 HVPLKILSIEDGTVL-----KSFNHLLHRNKKVDFIEQ--FNEKLLVK-Q-ENENLQILDVRNFELTEVSRTEFMTPSAF 326 (485)
Q Consensus 256 D~tIklWdi~tG~~L-----~tl~~~~~~~~~V~f~~~--~~~~lls~-s-~D~tIkIWDv~tg~~~~~l~gh~~~v~av 326 (485)
|++||+.-...-+|- ..|+-|.+.+..++|.+. .++.||++ + .|..|-|=|..+|+..+.+.||++.|-++
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 699999865544443 357778899999999632 24556654 3 88999999999999999999999999887
Q ss_pred EEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCC--CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 327 IFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 327 aFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~--~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
++-+|-+|+|++ |.||+.||++ ..|+.++...- .--....|.+|+..|.|++|+||-. |.+--|
T Consensus 190 -yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-----------dssc~l 257 (350)
T KOG0641|consen 190 -YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-----------DSSCML 257 (350)
T ss_pred -EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-----------CCceEE
Confidence 889999999999 9999999998 88999875321 1101123899999999999999876 688899
Q ss_pred EeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 403 SNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 403 Wdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
+||.-|+.++.+..|+. .|++|-|||--.+|.|+|.|..|||
T Consensus 258 ydirg~r~iq~f~phsa--------------------------------------dir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 258 YDIRGGRMIQRFHPHSA--------------------------------------DIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred EEeeCCceeeeeCCCcc--------------------------------------ceeEEEeCCCceEEEEecccceEEE
Confidence 99999999999999972 8999999999999999999999998
Q ss_pred ccC
Q 011452 483 WSN 485 (485)
Q Consensus 483 Wd~ 485 (485)
=|+
T Consensus 300 tdl 302 (350)
T KOG0641|consen 300 TDL 302 (350)
T ss_pred eec
Confidence 653
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=3.3e-20 Score=184.45 Aligned_cols=291 Identities=16% Similarity=0.275 Sum_probs=206.2
Q ss_pred cccceEEEEEe---cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 94 ~~s~V~~i~~s---~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
|+.+|.++.+. |++++||+-||.+.+||++.- ..+.++ .|+. ++.
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~------t~~e~s------------~li~--------------k~~ 89 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNA------TDYEAS------------GLIA--------------KHK 89 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccc------cchhhc------------ccee--------------hee
Confidence 78889888888 999999999999999997721 111111 1111 121
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC---Cce
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP---GIM 246 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp---g~~ 246 (485)
-+ +..... ..|.-.+..+-+=|-|.-.++|+|.|.|+||||..|-+....+. ...|.+-+.|| ...
T Consensus 90 c~--v~~~h~--------~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHc 159 (397)
T KOG4283|consen 90 CI--VAKQHE--------NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHC 159 (397)
T ss_pred ee--ccccCC--------ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcce
Confidence 11 111110 11111122222224455578999999999999999988888887 56899999998 234
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCCC-eeEEec--------
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNF-ELTEVS-------- 316 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg-~~~~~l-------- 316 (485)
|++.+- .|..|+|-|+..|.+-++|.||.+.|.+|.|+ |..+.+|+ ++.|++||+||++.- -|..++
T Consensus 160 LiA~gt--r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws-p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 160 LIAAGT--RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS-PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP 236 (397)
T ss_pred EEEEec--CCCcEEEEeccCCcceeeeccccCceEEEEec-cCceeEEEecCCCceEEEEEeecccceeEEeecccCccC
Confidence 544433 34899999999999999999999999999998 55666666 589999999999864 344443
Q ss_pred ------ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcE-EEEee--cCCCCCCCCCeeEEEEC---CCCCEEEE
Q 011452 317 ------RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL-VTSFE--DHLLWHPDCNTNNIYIT---SDQDLIIS 382 (485)
Q Consensus 317 ------~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~l-l~tl~--gH~~~~~~~~v~svafS---pDG~~LaS 382 (485)
..|...|+.++|+.||..+++.. |..+++|+.. |+- +..+- -|.. ..+.+|. -+....+-
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~------~~~~~~~~~~~~s~vfv~ 310 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ------TTSFAVHIQSMDSDVFVL 310 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccc------cccceEEEeecccceEEE
Confidence 45778899999999999999999 9999999985 652 11110 0110 1122221 11111111
Q ss_pred EecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEE
Q 011452 383 YCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITAL 462 (485)
Q Consensus 383 ~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 462 (485)
- .+|+++-|.++..|..+.-+.+|- ..|.+.
T Consensus 311 ~-----------p~~~~lall~~~sgs~ir~l~~h~--------------------------------------k~i~c~ 341 (397)
T KOG4283|consen 311 F-----------PNDGSLALLNLLEGSFVRRLSTHL--------------------------------------KRINCA 341 (397)
T ss_pred E-----------ecCCeEEEEEccCceEEEeeeccc--------------------------------------ceeeEE
Confidence 1 136899999999999999999994 378899
Q ss_pred EEcCCCCEEEEecCCCcEEEcc
Q 011452 463 FYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 463 ~fspDg~~LaSgs~DgtVklWd 484 (485)
+|-||=+++++|+.|+.|..|.
T Consensus 342 ~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 342 AYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred eecCchhhhhccccCCcccccc
Confidence 9999999999999999998884
No 116
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.4e-20 Score=200.55 Aligned_cols=316 Identities=16% Similarity=0.179 Sum_probs=228.1
Q ss_pred EEEEEeCCCeEEeeecccC--cEEEEeecCCcccEEEEEEeeCCC-EEEEEEeecCCCCcccceeEEEEeEeccCCc-C-
Q 011452 107 IVFALAQSGVCAAFCRETN--QRICFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYIRRGKP-D- 181 (485)
Q Consensus 107 ~ias~s~dgtiklW~~~tG--~~l~tl~g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t~~lw~i~~G~~-~- 181 (485)
.+|.++.+..+.++.-.++ ++++.|.| |.++|++|+|+..+. .+..+| ++.| +.||||.|.-+.. +
T Consensus 161 lla~Ggs~~~v~~~s~~~d~f~~v~el~G-H~DWIrsl~f~~~~~~~~~laS--~SQD------~yIRiW~i~~~~~~~~ 231 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSADSFARVAELEG-HTDWIRSLAFARLGGDDLLLAS--SSQD------RYIRIWRIVLGDDEDS 231 (764)
T ss_pred EEEecCcceEEEEeccCCcceeEEEEeec-cchhhhhhhhhccCCCcEEEEe--cCCc------eEEEEEEEEecCCccc
Confidence 4566777777777764433 46788888 899999999998876 333333 4567 8999998854441 0
Q ss_pred ----------cccceee------------e---ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCC--eEEEEE---
Q 011452 182 ----------AGFALFE------------S---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSI--- 231 (485)
Q Consensus 182 ----------~~~~lf~------------~---~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g--~~l~tl--- 231 (485)
.-.+.|. . +|-.|+.+|.+. |.|..|.|+|.|+++-+|...+- -=+-++
T Consensus 232 ~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~-p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlG 310 (764)
T KOG1063|consen 232 NEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH-PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLG 310 (764)
T ss_pred cccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc-cchhhheecccCcceEEEecCCccceEEEEEEee
Confidence 0011111 1 466789999997 78988899999999999986543 222222
Q ss_pred --cC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC-C--eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEE
Q 011452 232 --SD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIED-G--TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 304 (485)
Q Consensus 232 --~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t-G--~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkI 304 (485)
.+ ..-++.-|+|++..+++.+. .+-.++|-.++ + ..+....||...|+.|++. |.|+.|++.|-|.|-||
T Consensus 311 e~gg~a~GF~g~lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~-psGeflLsvs~DQTTRl 387 (764)
T KOG1063|consen 311 EVGGSAGGFWGGLWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD-PSGEFLLSVSLDQTTRL 387 (764)
T ss_pred cccccccceeeEEEcCCCCEEEEecc--cCcEEEEeccCccceeeccccccccccceeeeec-CCCCEEEEeccccceee
Confidence 22 35889999986544444333 37899998333 2 2344567999999999996 78999999999999999
Q ss_pred EECCCCe----eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC-------------------------------
Q 011452 305 LDVRNFE----LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF------------------------------- 348 (485)
Q Consensus 305 WDv~tg~----~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~------------------------------- 348 (485)
.-....+ .+....-|.....+++|-+..-.|+|+. ...+|+++.
T Consensus 388 Fa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 388 FARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred ecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 8766221 2223344777889999999777788988 677788861
Q ss_pred -------------CCcE----EE-----------------------------EeecCCCCCCCCCeeEEEECCCCCEEEE
Q 011452 349 -------------RGEL----VT-----------------------------SFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (485)
Q Consensus 349 -------------~G~l----l~-----------------------------tl~gH~~~~~~~~v~svafSpDG~~LaS 382 (485)
+|+. .. .|-||... |.++++||+|++|||
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE-----v~~l~~s~~gnliAS 542 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE-----VYALAISPTGNLIAS 542 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee-----EEEEEecCCCCEEee
Confidence 0111 11 13355443 999999999999999
Q ss_pred EecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEE
Q 011452 383 YCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITAL 462 (485)
Q Consensus 383 ~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 462 (485)
+|++..- +---|+||+..+-+.++.|++|+ ..|+-+
T Consensus 543 aCKS~~~------ehAvI~lw~t~~W~~~~~L~~Hs--------------------------------------LTVT~l 578 (764)
T KOG1063|consen 543 ACKSSLK------EHAVIRLWNTANWLQVQELEGHS--------------------------------------LTVTRL 578 (764)
T ss_pred hhhhCCc------cceEEEEEeccchhhhheecccc--------------------------------------eEEEEE
Confidence 9984211 12469999999888889999997 289999
Q ss_pred EEcCCCCEEEEecCCCcEEEcc
Q 011452 463 FYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 463 ~fspDg~~LaSgs~DgtVklWd 484 (485)
+|||||++|+|.|+|.|+.||.
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred EECCCCcEEEEeecCceEEeee
Confidence 9999999999999999999995
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.6e-20 Score=195.95 Aligned_cols=272 Identities=17% Similarity=0.153 Sum_probs=211.1
Q ss_pred cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCC
Q 011452 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 215 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ 215 (485)
-..|.|+|||.+...||.+= .+ ..+.||.++.+=+. .+.+....-.++.+++|. +|..|-|.+.++
T Consensus 25 Ps~I~slA~s~kS~~lAvsR----t~------g~IEiwN~~~~w~~--~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg 90 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSR----TD------GNIEIWNLSNNWFL--EPVIHGPEDRSIESLAWA--EGGRLFSSGLSG 90 (691)
T ss_pred ccceEEEEEeccCCceeeec----cC------CcEEEEccCCCcee--eEEEecCCCCceeeEEEc--cCCeEEeecCCc
Confidence 34699999999999988633 23 49999998765442 123333334567789997 456677888899
Q ss_pred cEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEE--eecCCcceeEEEEEecCC
Q 011452 216 IYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKS--FNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 216 tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~t--l~~~~~~~~~V~f~~~~~ 290 (485)
+|--||+.+++.++.+. +..||+++++| +..+++++ .|+-+.+.++..++.... |.--.+++.+|+|. +++
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc---ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~~~ 166 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC---DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-PTG 166 (691)
T ss_pred eEEEEecccCceeEEecCCCcceeEEEeCCccceEEeec---CCceEEEEecCCceEEEEeecccccceEEEEEec-CCc
Confidence 99999999999999886 67899999999 55555552 346899999998887643 33334788899997 677
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEe-------c-ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCC
Q 011452 291 EKLLVKQENENLQILDVRNFELTEV-------S-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHL 360 (485)
Q Consensus 291 ~~lls~s~D~tIkIWDv~tg~~~~~-------l-~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~ 360 (485)
-+|++|+.|+-||+||+.++..+.. + ++..--||+|.|..|++ ||||. -|+|+.||.. |.+++++..|.
T Consensus 167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS~~~h~ 245 (691)
T KOG2048|consen 167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQSHSCHD 245 (691)
T ss_pred cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhhhhhhh
Confidence 8899999999999999999987662 1 23556899999999987 56665 9999999996 99999999998
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe----cCCCCCCCCcccccCCCCCCCC
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI----RASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl----~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
.- |.+++.+++++++.|++. |+.|-.....+++--... ..|.
T Consensus 246 ad-----Vl~Lav~~~~d~vfsaGv-----------d~~ii~~~~~~~~~~wv~~~~r~~h~------------------ 291 (691)
T KOG2048|consen 246 AD-----VLALAVADNEDRVFSAGV-----------DPKIIQYSLTTNKSEWVINSRRDLHA------------------ 291 (691)
T ss_pred cc-----eeEEEEcCCCCeEEEccC-----------CCceEEEEecCCccceeeeccccCCc------------------
Confidence 76 999999999999999987 677766666655331111 1232
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
.+|.+++..++ .|+||+.|.++-+
T Consensus 292 --------------------hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 292 --------------------HDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred --------------------ccceeeeeecc--eEEecceeeEEEE
Confidence 28999999998 9999999998864
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=8.6e-21 Score=196.22 Aligned_cols=231 Identities=13% Similarity=0.173 Sum_probs=180.7
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeE----------EEEEc--CCcEEEEEEcC--CceEEEEEcCCCCeeEEEE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----------LYSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~----------l~tl~--~~~V~~VafSp--g~~ll~sss~~~D~tIklW 262 (485)
.+..-|.|-.++|+.+..+.|-|||.....- -.+|. ...=.++.+++ .+.||++ +.|.+|.+|
T Consensus 129 RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~---~~d~~i~lw 205 (422)
T KOG0264|consen 129 RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG---SDDHTICLW 205 (422)
T ss_pred hhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec---cCCCcEEEE
Confidence 3445577888999999999999999764321 12343 33456688886 5666654 456899999
Q ss_pred ecCCCeE-------EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC--CCeeEEecccCCCceEEEEEcC-CC
Q 011452 263 SIEDGTV-------LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR--NFELTEVSRTEFMTPSAFIFLY-EN 332 (485)
Q Consensus 263 di~tG~~-------L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~--tg~~~~~l~gh~~~v~avaFsp-dg 332 (485)
|+..... ...|.+|...|..|+|.+.+...+.+.++|+.+.|||++ +.++..+..+|...|++++|+| ++
T Consensus 206 di~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~ 285 (422)
T KOG0264|consen 206 DINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE 285 (422)
T ss_pred eccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC
Confidence 9975433 356789999999999986666666667999999999999 6677888899999999999987 66
Q ss_pred cEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCE-EEEEecCCCCCCCCcCCCCeEEEEeCCC-
Q 011452 333 QLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKADSDDPLAEGNAGSINISNILT- 407 (485)
Q Consensus 333 ~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~-LaS~s~d~~~d~~~~~~DgtIklWdl~T- 407 (485)
.+|||+| |+||+|||++ .+.+.+|++|... |..|.|||+-+. |||++ .|+.++|||+..
T Consensus 286 ~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de-----v~~V~WSPh~etvLASSg-----------~D~rl~vWDls~i 349 (422)
T KOG0264|consen 286 FILATGSADKTVALWDLRNLNKPLHTFEGHEDE-----VFQVEWSPHNETVLASSG-----------TDRRLNVWDLSRI 349 (422)
T ss_pred ceEEeccCCCcEEEeechhcccCceeccCCCcc-----eEEEEeCCCCCceeEecc-----------cCCcEEEEecccc
Confidence 7888999 9999999996 7899999999987 999999998755 55544 489999999853
Q ss_pred Ce-------------EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEE
Q 011452 408 GK-------------CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYT 473 (485)
Q Consensus 408 Gk-------------~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaS 473 (485)
|+ ++.+=-||. ..|....|+|+.. +|+|
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~--------------------------------------~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHT--------------------------------------AKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred ccccChhhhccCCcceeEEecCcc--------------------------------------cccccccCCCCCCeEEEE
Confidence 21 123333444 2788899999886 5899
Q ss_pred ecCCCcEEEcc
Q 011452 474 GNRHGLVHVWS 484 (485)
Q Consensus 474 gs~DgtVklWd 484 (485)
.++|+.++||+
T Consensus 392 vaeDN~LqIW~ 402 (422)
T KOG0264|consen 392 VAEDNILQIWQ 402 (422)
T ss_pred ecCCceEEEee
Confidence 99999999996
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=7.2e-20 Score=182.60 Aligned_cols=274 Identities=17% Similarity=0.172 Sum_probs=208.2
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEE
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTY 210 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las 210 (485)
|+..+.+.|-+|-|+|.++.|+.+|+|| +++++++..-.+ ...|.++ ..+...+|- |-..+++
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDg----------slrlYdv~~~~l---~~~~~~~--~plL~c~F~--d~~~~~~ 70 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDG----------SLRLYDVPANSL---KLKFKHG--APLLDCAFA--DESTIVT 70 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccC----------cEEEEeccchhh---hhheecC--Cceeeeecc--CCceEEE
Confidence 4555788999999999999888888654 888999855544 2245542 345578995 4567788
Q ss_pred eeCCCcEEEeecCCCeEEEEE-cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecC
Q 011452 211 SAQDSIYKVFDLKNYTMLYSI-SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 211 ~s~D~tiKlWdl~~g~~l~tl-~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~ 289 (485)
|+-|++||+.|+.+++...-. |+..|++|.+++..-.++++ +.|++||+||..+-.+.-++. ...+|.-....
T Consensus 71 G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsg--sWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v~ 144 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISG--SWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDVS 144 (323)
T ss_pred eccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEc--ccCccEEEEeccccccccccc----cCceEEEEecc
Confidence 999999999999999876655 46799999999733333443 466999999987633444443 33355544455
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEec--ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C----cEEEEeecCCC
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEVS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLL 361 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~l--~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G----~ll~tl~gH~~ 361 (485)
+.+|++|..|..+.+||+++-..-... ..-...+.+|++.|++.=++.+| ||-|.+=.++ - +....|..|..
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~ 224 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL 224 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec
Confidence 899999999999999999986542221 23456899999999999999999 9999887775 4 34668888876
Q ss_pred CCCC----CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 362 WHPD----CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 362 ~~~~----~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
-..+ -.||+|+|+|=-+++|||+. ||-|.+||+.+.|-+..|..-.
T Consensus 225 ~~~~~~~~yPVNai~Fhp~~~tfaTgGs-----------DG~V~~Wd~~~rKrl~q~~~~~------------------- 274 (323)
T KOG1036|consen 225 SEKDTEIIYPVNAIAFHPIHGTFATGGS-----------DGIVNIWDLFNRKRLKQLAKYE------------------- 274 (323)
T ss_pred ccCCceEEEEeceeEeccccceEEecCC-----------CceEEEccCcchhhhhhccCCC-------------------
Confidence 4322 13899999999999999875 8999999999999888885543
Q ss_pred cccccccccccccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
..|-+++|+-||..||.|+.
T Consensus 275 -------------------~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 -------------------TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -------------------CceEEEEeccCCCeEEEEec
Confidence 16899999999999999974
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=9.4e-21 Score=203.85 Aligned_cols=292 Identities=15% Similarity=0.146 Sum_probs=214.6
Q ss_pred cccCCCCcccccccccccccceEEEEEe-------------cCEEEEEeCCCeEEeeecccC---cEEE-----------
Q 011452 77 DTHDPKGHCSMVLPFLRKRSKIIEIVAA-------------RDIVFALAQSGVCAAFCRETN---QRIC----------- 129 (485)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~s~V~~i~~s-------------~~~ias~s~dgtiklW~~~tG---~~l~----------- 129 (485)
|.-|++-..+. .-+|-|.+-|++|.-- ..-+.+.|.|+|||||+++.+ +.++
T Consensus 352 DvrD~~kvgk~-~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki 430 (1080)
T KOG1408|consen 352 DVRDVNKVGKC-SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKI 430 (1080)
T ss_pred eccccccccce-eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcC
Confidence 33344333333 3455677777766431 466889999999999998841 2111
Q ss_pred -----------------------EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccce
Q 011452 130 -----------------------FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (485)
Q Consensus 130 -----------------------tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~l 186 (485)
.+-. ....||+|+.|||||.||++- +|+++++.++..=.+ .+
T Consensus 431 ~y~d~~~q~~~d~~~~~fdka~~s~~d-~r~G~R~~~vSp~gqhLAsGD----------r~GnlrVy~Lq~l~~----~~ 495 (1080)
T KOG1408|consen 431 PYEDSTQQIMHDASAGIFDKALVSTCD-SRFGFRALAVSPDGQHLASGD----------RGGNLRVYDLQELEY----TC 495 (1080)
T ss_pred ccccCchhhhhhccCCcccccchhhcC-cccceEEEEECCCcceecccC----------ccCceEEEEehhhhh----hh
Confidence 0011 122499999999999998722 357899988754333 22
Q ss_pred eeeccccCceEEEEeCCC--CeEEEEeeCCCcEEEeecC-CCeEEEEEcC--CcEEEEEEcC--CceEEEEEcCCCCeeE
Q 011452 187 FESESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLK-NYTMLYSISD--KNVQEIKISP--GIMLLIFTKASGHVPL 259 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pn--G~~Las~s~D~tiKlWdl~-~g~~l~tl~~--~~V~~VafSp--g~~ll~sss~~~D~tI 259 (485)
|-..|-..+-.++|+.|+ .++|||+|.|+.|.|+|++ +|.++.|+.+ ..|.+|+|-- ++..++++.+| +.|
T Consensus 496 ~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD--ksi 573 (1080)
T KOG1408|consen 496 FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD--KSI 573 (1080)
T ss_pred heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc--hhh
Confidence 332344456688998664 5899999999999999997 7889999965 4799999993 45777777665 343
Q ss_pred EEEecCC----CeEEEEeecCCc-----ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc---CCCceEEEE
Q 011452 260 KILSIED----GTVLKSFNHLLH-----RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT---EFMTPSAFI 327 (485)
Q Consensus 260 klWdi~t----G~~L~tl~~~~~-----~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g---h~~~v~ava 327 (485)
. ++... |.. |.-|.+ ..+.++. .|.-+.+++++.|.+|||+|+++|+..+.++| |.+..-.|.
T Consensus 574 m-Fr~~qk~~~g~~---f~r~t~t~~ktTlYDm~V-dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~ 648 (1080)
T KOG1408|consen 574 M-FRVNQKASSGRL---FPRHTQTLSKTTLYDMAV-DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI 648 (1080)
T ss_pred h-eehhccccCcee---ccccccccccceEEEeee-CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE
Confidence 2 22222 322 222222 2345554 35567777889999999999999999998854 777888999
Q ss_pred EcCCCcEEEEEe-CCcEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 328 FLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 328 Fspdg~llaS~s-D~TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.-|-|-++|++. |+|+.++|+ .|||+.++.||... |..+-|++|-+.|+|.+. ||-|-||.+
T Consensus 649 lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~-----VTG~kF~nDCkHlISvsg-----------DgCIFvW~l 712 (1080)
T KOG1408|consen 649 LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA-----VTGVKFLNDCKHLISVSG-----------DGCIFVWKL 712 (1080)
T ss_pred ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh-----eeeeeecccchhheeecC-----------CceEEEEEC
Confidence 999999999998 999999999 59999999999987 999999999999999987 799999987
Q ss_pred CC
Q 011452 406 LT 407 (485)
Q Consensus 406 ~T 407 (485)
..
T Consensus 713 p~ 714 (1080)
T KOG1408|consen 713 PL 714 (1080)
T ss_pred ch
Confidence 53
No 121
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=5.7e-20 Score=183.08 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=208.0
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc-CCcCcccceeeeccccCceEEEEeCCCCeEE
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLKWPGFVEFDDVNGKVL 208 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~L 208 (485)
.+...+++.|-+|+|||.-+.++.++ +.| .++|+|++.. |++.. ... .++-+.+..|+|+ .||..+
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~---SWD------~tVR~wevq~~g~~~~-ka~--~~~~~PvL~v~Ws-ddgskV 87 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAG---SWD------GTVRIWEVQNSGQLVP-KAQ--QSHDGPVLDVCWS-DDGSKV 87 (347)
T ss_pred ecCCCcccchheeEeccccCceEEec---ccC------CceEEEEEecCCcccc-hhh--hccCCCeEEEEEc-cCCceE
Confidence 35566888999999999555555333 344 5999999965 66522 111 1344567789998 699999
Q ss_pred EEeeCCCcEEEeecCCCeEEE-EEcCCcEEEEEEcCCce--EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEE
Q 011452 209 TYSAQDSIYKVFDLKNYTMLY-SISDKNVQEIKISPGIM--LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g~~l~-tl~~~~V~~VafSpg~~--ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f 285 (485)
.+|+.|+.+|+|||.+++... -.|+..|..+.|=++.. +|+++ +-|+|||.||...-+++.++. +-.+++..+.
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG--SWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv 164 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG--SWDKTLKFWDTRSSNPVATLQ-LPERVYAADV 164 (347)
T ss_pred EeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec--ccccceeecccCCCCeeeeee-ccceeeehhc
Confidence 999999999999999998544 44788999999986443 55554 466999999999999998886 2356666654
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeEE--ecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C--cEEEEeecC
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFELTE--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G--ELVTSFEDH 359 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~~~--~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G--~ll~tl~gH 359 (485)
. ...++++-.|..|.+++++++.... .-..-...+++|+.-+|++.+|-|+ .|.+.|-.++ + +--.+|.-|
T Consensus 165 ~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH 241 (347)
T KOG0647|consen 165 L---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH 241 (347)
T ss_pred c---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEe
Confidence 3 3467778899999999999764211 1111234689999999999999999 9999999996 6 455678888
Q ss_pred CCCC---C-CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCC
Q 011452 360 LLWH---P-DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 360 ~~~~---~-~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
.... + -..||+|+|.|.-..|++++. ||++..||-....-|++.+-|.
T Consensus 242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-----------DGtf~FWDkdar~kLk~s~~~~----------------- 293 (347)
T KOG0647|consen 242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-----------DGTFSFWDKDARTKLKTSETHP----------------- 293 (347)
T ss_pred ccCCCCCCceEEecceEeecccceEEEecC-----------CceEEEecchhhhhhhccCcCC-----------------
Confidence 7311 0 123899999999999999875 8999999977666666666665
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEe
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG 474 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg 474 (485)
..|++..|+-+|+++|=+
T Consensus 294 ---------------------qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 294 ---------------------QPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ---------------------CccceeEecCCCCEEEEE
Confidence 389999999999987654
No 122
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.8e-20 Score=191.32 Aligned_cols=281 Identities=13% Similarity=0.187 Sum_probs=216.1
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccc--cCceEEEEeCCCCe-EEEEeeC
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESL--KWPGFVEFDDVNGK-VLTYSAQ 213 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~--~~~~~V~Fs~pnG~-~Las~s~ 213 (485)
..|+||-|.|.-+.|++++ .| ++++|+.| +||.+. +.+.-++ -.+...+|. |+|+ .+.+++.
T Consensus 214 ~~I~sv~FHp~~plllvaG----~d------~~lrifqv-DGk~N~---~lqS~~l~~fPi~~a~f~-p~G~~~i~~s~r 278 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAG----LD------GTLRIFQV-DGKVNP---KLQSIHLEKFPIQKAEFA-PNGHSVIFTSGR 278 (514)
T ss_pred CCceEEEecCCCceEEEec----CC------CcEEEEEe-cCccCh---hheeeeeccCccceeeec-CCCceEEEeccc
Confidence 4799999999999999866 45 69999986 888754 2332111 224468897 7998 8999999
Q ss_pred CCcEEEeecCCCeEEE-----EEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec
Q 011452 214 DSIYKVFDLKNYTMLY-----SISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ 288 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~-----tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~ 288 (485)
-.-+..|||.+.+... ......+....+||++.+++.++.. +-|.|....|++.+.+|+- .+.+..+.|+ .
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~--G~I~lLhakT~eli~s~Ki-eG~v~~~~fs-S 354 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN--GHIHLLHAKTKELITSFKI-EGVVSDFTFS-S 354 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC--ceEEeehhhhhhhhheeee-ccEEeeEEEe-c
Confidence 9999999999887432 2223467789999744444443333 7999999999999999983 3678899998 5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEecccCCC-ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-------CcEEEEeecC
Q 011452 289 FNEKLLVKQENENLQILDVRNFELTEVSRTEFM-TPSAFIFLYENQLFLTFR-NRTVAVWNFR-------GELVTSFEDH 359 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~-~v~avaFspdg~llaS~s-D~TIklWd~~-------G~ll~tl~gH 359 (485)
++..|++++.+|.|-+||+++..|++.+..... .-.+++.|++|++||+|| -|.|-|||.+ -+.+.++..-
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL 434 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL 434 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence 678888899999999999999999998754321 336688899999999999 8999999942 3467777655
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccc
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNV 439 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 439 (485)
... |.++.|+||+|+||.+|. ..+.++||=.+.+-..-..+...
T Consensus 435 tt~-----Itsl~Fn~d~qiLAiaS~---------~~knalrLVHvPS~TVFsNfP~~---------------------- 478 (514)
T KOG2055|consen 435 TTA-----ITSLQFNHDAQILAIASR---------VKKNALRLVHVPSCTVFSNFPTS---------------------- 478 (514)
T ss_pred hee-----eeeeeeCcchhhhhhhhh---------ccccceEEEeccceeeeccCCCC----------------------
Confidence 544 999999999999999985 35788999887654333333222
Q ss_pred cccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 440 KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.-+..|++|+|||.|-+||-|+++|.|+||.+
T Consensus 479 -------------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 479 -------------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred -------------CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 112349999999999999999999999999974
No 123
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=3.2e-20 Score=184.89 Aligned_cols=241 Identities=14% Similarity=0.148 Sum_probs=179.1
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCC-CeEEEEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI---SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~~l~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
.+..++|||...-.|+.+|.|+|||+|++++ |...-.- ++..|.+|+||.++..+.+++ -|+.+|+||+++|+.
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~--~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG--CDKQAKLWDLASGQV 106 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec--cCCceEEEEccCCCe
Confidence 3458999965667777899999999999986 5543221 356899999997666666654 458999999999965
Q ss_pred EEEeecCCcceeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 270 LKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~-~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
. .+.-|...++.+.|++.-+ +.|++||+|+|||.||.+...++.++. -...+++... ...+++.+. ++.|.+++
T Consensus 107 ~-~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 107 S-QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYN 182 (347)
T ss_pred e-eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEEEE
Confidence 4 5566889999999986544 356668999999999999998877763 2235555533 344566666 99999999
Q ss_pred CC-Cc-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC--eEEEEecCCCCCCCC
Q 011452 348 FR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG--KCLAKIRASNGLPAE 423 (485)
Q Consensus 348 ~~-G~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG--k~l~tl~gH~~~~~~ 423 (485)
++ +. .....+.-..|+ +++|++-+|++.-|-||- .|.+-|-.+..+ +--.+|+-|..
T Consensus 183 L~n~~te~k~~~SpLk~Q----~R~va~f~d~~~~alGsi-----------EGrv~iq~id~~~~~~nFtFkCHR~---- 243 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQ----TRCVACFQDKDGFALGSI-----------EGRVAIQYIDDPNPKDNFTFKCHRS---- 243 (347)
T ss_pred cCCCcchhhhhcCcccce----eeEEEEEecCCceEeeee-----------cceEEEEecCCCCccCceeEEEecc----
Confidence 96 32 334444444443 899999999988888876 688888888877 55567777762
Q ss_pred cccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 424 NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.+. .. -.-| .|.+|+|+|.-.+|||++.||+.-.||
T Consensus 244 ------~~~------------~~----~~VY---aVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 244 ------TNS------------VN----DDVY---AVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred ------CCC------------CC----CceE---EecceEeecccceEEEecCCceEEEec
Confidence 110 00 0011 788999999999999999999999998
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.2e-20 Score=193.96 Aligned_cols=276 Identities=11% Similarity=0.064 Sum_probs=204.6
Q ss_pred EEEEEeCCCe-EEeeecccCcEEEEeecCCcccEEEE-EEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 107 IVFALAQSGV-CAAFCRETNQRICFLNVTADEVIRSL-FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 107 ~ias~s~dgt-iklW~~~tG~~l~tl~g~~~~~i~sv-~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
++.+.|.|.. |..||+.||..+-+..++-...=.++ +.++ ++++++.. +=..+.+|.+..-+... +
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~--~yllsaq~---------~rp~l~vw~i~k~~~~~-q 76 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNN--EYLLSAQL---------KRPLLHVWEILKKDQVV-Q 76 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhch--hheeeecc---------cCccccccccCchhhhh-h
Confidence 4555666666 99999999998888877511111111 2222 56665442 22477888873322211 0
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEE
Q 011452 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklW 262 (485)
...- -+-+..++-+ |+|-+|+.|..-+.+.+|.+.+|.+|+.++.| .|.+++||.+++.+++++ .|+-|.+|
T Consensus 77 ~~v~---Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs--kDg~V~vW 150 (476)
T KOG0646|consen 77 YIVL---PGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS--KDGAVLVW 150 (476)
T ss_pred hccc---ccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC--CCccEEEE
Confidence 0000 1123356655 79999998878999999999999999999764 799999998777777755 56899999
Q ss_pred ecC---------CCeEEEEeecCCcceeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCC
Q 011452 263 SIE---------DGTVLKSFNHLLHRNKKVDFIE-QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN 332 (485)
Q Consensus 263 di~---------tG~~L~tl~~~~~~~~~V~f~~-~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg 332 (485)
++- +=+.+..|.+|.-.|..+.... +.+.+|+++|+|.|+|+||+..|.++.+.. -...+.|++..|-.
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae 229 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAE 229 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccc
Confidence 864 3356777888877777665431 235799999999999999999999888763 34589999999999
Q ss_pred cEEEEEe-CCcEEEEeC-----------------CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 333 QLFLTFR-NRTVAVWNF-----------------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 333 ~llaS~s-D~TIklWd~-----------------~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
+.+--|. +|.|-+-++ +++.+..|.||... ..|..++++-||.+|+||+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~---~~ITcLais~DgtlLlSGd~--------- 297 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE---SAITCLAISTDGTLLLSGDE--------- 297 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC---cceeEEEEecCccEEEeeCC---------
Confidence 9998888 998877664 23456789999872 22999999999999999987
Q ss_pred CCCCeEEEEeCCCCeEEEEec
Q 011452 395 GNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 395 ~~DgtIklWdl~TGk~l~tl~ 415 (485)
||+|.|||+.+.||++++.
T Consensus 298 --dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 298 --DGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred --CCCEEEEecchHHHHHHHh
Confidence 7999999999999999996
No 125
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.7e-19 Score=178.45 Aligned_cols=279 Identities=14% Similarity=0.122 Sum_probs=197.7
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeeccc-----CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRET-----NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~t-----G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~ 166 (485)
|...|..+.|+ |..||+.+.|++|+||+++. -++|+. |..-+ --.-|+|.||-..++..-. ..+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~d-hpT~V~FapDc~s~vv~~~--~g~----- 155 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYD-HPTRVVFAPDCKSVVVSVK--RGN----- 155 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCC-CceEEEECCCcceEEEEEc--cCC-----
Confidence 66778888888 99999999999999999763 223431 22112 2467999999998876443 333
Q ss_pred eeEEEEeEe---ccCCcCcccc-----eeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cE
Q 011452 167 CRSTRIEYI---RRGKPDAGFA-----LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NV 236 (485)
Q Consensus 167 ~~t~~lw~i---~~G~~~~~~~-----lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V 236 (485)
++.++-+ ..|..-.... -|+..+..-+-.+-.- .++++|+|+|.|.+|-||+++ |+.|.++..+ .-
T Consensus 156 --~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 156 --KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN 231 (420)
T ss_pred --EEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence 5555554 3343311000 0111111111123333 589999999999999999998 9999998643 45
Q ss_pred EEEEEcCCceEEEEEcCCCCeeEEEEecC---CCeE-----EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011452 237 QEIKISPGIMLLIFTKASGHVPLKILSIE---DGTV-----LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~D~tIklWdi~---tG~~-----L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~ 308 (485)
...+.||+|++++++.-- --||+|.+- +|+. ...|+||+..|.+.+|+ ++.+++++.|.||++||||..
T Consensus 232 ~~aavSP~GRFia~~gFT--pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFT--PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cceeeCCCCcEEEEecCC--CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEEecCCcEEEeecc
Confidence 678999988877765443 459999753 4432 45788999999999997 667888999999999999976
Q ss_pred CC-------eeEEec----ccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 309 NF-------ELTEVS----RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 309 tg-------~~~~~l----~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
-. +.+++. ..-...+-.++.+|+|+.||.+...+++++..+ |+-.-+|+.-... | |.+|+|+||
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~---~-Is~is~~~~ 384 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHST---T-ISSISYSSD 384 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcC---c-eeeEEecCC
Confidence 21 223222 222345568899999999998888899999996 9988888753222 3 899999999
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
|++||+++ |..+++.-
T Consensus 385 g~~~atcG------------dr~vrv~~ 400 (420)
T KOG2096|consen 385 GKYIATCG------------DRYVRVIR 400 (420)
T ss_pred CcEEeeec------------ceeeeeec
Confidence 99999987 57888764
No 126
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.9e-18 Score=184.33 Aligned_cols=273 Identities=12% Similarity=0.097 Sum_probs=214.7
Q ss_pred CcccccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEE-EEeecCCcccEEEEEEeeCCCEEEEEEeecC
Q 011452 83 GHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRI-CFLNVTADEVIRSLFYNKNNDSLITVSVYAS 159 (485)
Q Consensus 83 ~~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l-~tl~g~~~~~i~sv~~spdg~~Las~S~d~~ 159 (485)
+|.|-|--+ +.++|.+++|+ ...||.+=.||.|.+||+..+-++ .++.|+.+..|-+|+|.+.| .|.|++.
T Consensus 15 vhrcrf~d~--~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~--- 88 (691)
T KOG2048|consen 15 VHRCRFVDY--KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGL--- 88 (691)
T ss_pred EEEEEEEee--eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecC---
Confidence 445556556 88999999999 566999999999999999876644 46778788899999999554 5777664
Q ss_pred CCCcccceeEEEEeEeccCCcCcccceeeec-cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc----CC
Q 011452 160 DNFSSLRCRSTRIEYIRRGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DK 234 (485)
Q Consensus 160 ~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~----~~ 234 (485)
+ ..+.-||+.+++. +...+ ..+.+|+++.. |.+..|+-|.+||.+...+..+++..|... ..
T Consensus 89 -s------g~i~EwDl~~lk~-----~~~~d~~gg~IWsiai~-p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 89 -S------GSITEWDLHTLKQ-----KYNIDSNGGAIWSIAIN-PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred -C------ceEEEEecccCce-----eEEecCCCcceeEEEeC-CccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 3 4888999999887 33332 23557789997 688899999999999999998888776542 36
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee----c----CCcceeEEEEEecCCCEEEEEeCCCcEEEEE
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN----H----LLHRNKKVDFIEQFNEKLLVKQENENLQILD 306 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~----~----~~~~~~~V~f~~~~~~~lls~s~D~tIkIWD 306 (485)
.|.+|+|+|.+..+++++ .|+-|++||...|+.++-.. + -.--+|+|.|.. ++.|++|-.-|+|+.||
T Consensus 156 RvLslsw~~~~~~i~~Gs--~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGS--IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWD 231 (691)
T ss_pred eEEEEEecCCccEEEecc--cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEc
Confidence 899999999888555543 45899999999999988211 1 112368999974 67888888999999999
Q ss_pred CCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCc---EEE--EeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 307 VRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE---LVT--SFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 307 v~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~---ll~--tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
..+|.+++...-|...|.+++..+++..+.+++ |++|-.+-..+. -+. ....|... |++++..++ .|
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd-----vrs~av~~~--~l 304 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD-----VRSMAVIEN--AL 304 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccc-----ceeeeeecc--eE
Confidence 999999999999999999999999999999999 999888887533 222 23344433 899999888 88
Q ss_pred EEEec
Q 011452 381 ISYCK 385 (485)
Q Consensus 381 aS~s~ 385 (485)
+||+.
T Consensus 305 ~sgG~ 309 (691)
T KOG2048|consen 305 ISGGR 309 (691)
T ss_pred Eecce
Confidence 88876
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.2e-19 Score=177.30 Aligned_cols=239 Identities=15% Similarity=0.195 Sum_probs=174.4
Q ss_pred eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe----EEEEE--cCCcEEEEEEc-C--CceEEEEEcCCCCe
Q 011452 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSI--SDKNVQEIKIS-P--GIMLLIFTKASGHV 257 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~----~l~tl--~~~~V~~VafS-p--g~~ll~sss~~~D~ 257 (485)
|..+|..-+-.|.|| +-|+.+|+||.|++|||||.+..+ +.-.. |+..|+.|.+- | |+.+|+. +.|+
T Consensus 8 i~s~h~DlihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c---S~Dr 83 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC---SYDR 83 (361)
T ss_pred cccCCcceeeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEE---ecCC
Confidence 333333334589997 799999999999999999976433 33333 45689999998 6 7666654 4669
Q ss_pred eEEEEecC---------CCeEEEEeecCCcceeEEEEEecC-CCEEEEEeCCCcEEEEECCCC------eeEEec-----
Q 011452 258 PLKILSIE---------DGTVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNF------ELTEVS----- 316 (485)
Q Consensus 258 tIklWdi~---------tG~~L~tl~~~~~~~~~V~f~~~~-~~~lls~s~D~tIkIWDv~tg------~~~~~l----- 316 (485)
|++||.=. .-....+|......+..|.|.|.. |=+|++.+.||+|||++.-.- .++..+
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99999631 123456777666778899998654 445666799999999975432 222222
Q ss_pred --ccCCCceEEEEEcC---CCcEEEEEeCC------cEEEEeCC--C-cE--EEEeecCCCCCCCCCeeEEEECCC----
Q 011452 317 --RTEFMTPSAFIFLY---ENQLFLTFRNR------TVAVWNFR--G-EL--VTSFEDHLLWHPDCNTNNIYITSD---- 376 (485)
Q Consensus 317 --~gh~~~v~avaFsp---dg~llaS~sD~------TIklWd~~--G-~l--l~tl~gH~~~~~~~~v~svafSpD---- 376 (485)
..+.....+|.++| .-++||.|+|. .++||... | ++ +.+|.+|... |.+|+|.|+
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-----I~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-----IRDISWAPNIGRS 238 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-----ceeeeeccccCCc
Confidence 23444667777776 46789998866 99999983 5 43 5689999988 999999996
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe--------------------EEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISNILTGK--------------------CLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk--------------------~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
-++||.+|+ || |+||++..-. .+..+.+|+
T Consensus 239 y~~lAvA~k-----------Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~------------------ 288 (361)
T KOG2445|consen 239 YHLLAVATK-----------DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN------------------ 288 (361)
T ss_pred eeeEEEeec-----------Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC------------------
Confidence 478999998 78 9999987311 112222332
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..||.|.|+--|.+|+|.+.||+||||.
T Consensus 289 --------------------~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 289 --------------------GEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred --------------------CceEEEEEeeeeeEEeecCCCceeeehh
Confidence 3899999999999999999999999995
No 128
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.7e-19 Score=189.17 Aligned_cols=313 Identities=13% Similarity=0.140 Sum_probs=232.2
Q ss_pred ccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 91 FLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 91 ~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
|--|.+.|.+|... |+.||+|+.|||+|+|.+.||.|++++.. ++.|+||+|+|.++.=+.+-+.+ .
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~--~------- 464 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVG--E------- 464 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEec--C-------
Confidence 44588889998887 99999999999999999999999999986 66899999999998644433322 2
Q ss_pred EEEEeEeccCCcC---cccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC------CCeEEEEEcCCcEEEE
Q 011452 169 STRIEYIRRGKPD---AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISDKNVQEI 239 (485)
Q Consensus 169 t~~lw~i~~G~~~---~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~------~g~~l~tl~~~~V~~V 239 (485)
.+-|-+..-|.-. .+..+|.. + |+ -...|.++-.|.-. -|-|+..-+...|..|
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~----------~--~~-----~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v 527 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLAS----------A--PN-----ESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV 527 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhc----------C--CC-----ccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence 2222222222110 00111211 0 00 01234466677633 1223333357899999
Q ss_pred EEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc
Q 011452 240 KIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT 318 (485)
Q Consensus 240 afS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g 318 (485)
.++ .|..|++.+.++....|-|-++..++.+-.|.-.-+.+..|.|.+ .--+|+++ .-..|||||+..+++.+.+..
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVa-Tq~~vRiYdL~kqelvKkL~t 605 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVA-TQRSVRIYDLSKQELVKKLLT 605 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecC-CCceEEEE-eccceEEEehhHHHHHHHHhc
Confidence 999 577888777777777888888887777767754447788999984 44455554 236799999999998888888
Q ss_pred CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 319 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 319 h~~~v~avaFspdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
...+|+.++.+|.|.-|+-++ |+.+-.+|++ .+..++|.-|... |++|+|.+-=-+++|||.
T Consensus 606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a-----vr~Va~H~ryPLfas~sd---------- 670 (733)
T KOG0650|consen 606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-----VRSVAFHKRYPLFASGSD---------- 670 (733)
T ss_pred CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh-----hhhhhhccccceeeeecC----------
Confidence 888999999999999999999 9999888986 6789999999877 999999999999999986
Q ss_pred CCCeEEEEe------CCCC---eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC
Q 011452 396 NAGSINISN------ILTG---KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE 466 (485)
Q Consensus 396 ~DgtIklWd------l~TG---k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp 466 (485)
||++-|+. +... -.|+.|+||.- .|. ..|..+.|+|
T Consensus 671 -Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~-----------------------~~~-----------~gVLd~~wHP 715 (733)
T KOG0650|consen 671 -DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK-----------------------TND-----------LGVLDTIWHP 715 (733)
T ss_pred -CCcEEEEeeeeehhhhcCCceEeeeeccCcee-----------------------ecc-----------cceEeecccC
Confidence 79998884 2111 14678889972 111 2788899999
Q ss_pred CCCEEEEecCCCcEEEc
Q 011452 467 DRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 467 Dg~~LaSgs~DgtVklW 483 (485)
.-..|+|++.|||||||
T Consensus 716 ~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 716 RQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEEecCCCceEEee
Confidence 99999999999999999
No 129
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=4.4e-19 Score=176.48 Aligned_cols=205 Identities=15% Similarity=0.102 Sum_probs=160.2
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--E-----EEEE----cC------CcEEEEEEcC--CceEEEEE
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--M-----LYSI----SD------KNVQEIKISP--GIMLLIFT 251 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~-----l~tl----~~------~~V~~VafSp--g~~ll~ss 251 (485)
|.+.+.++..++..|+++.||+.|+.|-||||++-. . .... .+ ..|.++-+=| .||+.++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss- 120 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS- 120 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc-
Confidence 345566788888899999999999999999998644 1 1111 11 2577777776 6776543
Q ss_pred cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC-CEEEE-EeCCCcEEEEECCCCeeEEecccCCCceEEEEEc
Q 011452 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~-~~lls-~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs 329 (485)
+.|.|+|+||..|-+...+|+- .+.|++-+.+|-.- ..|++ +-.|-.|||=|+++|.+-++|.||.+.|-+|.|+
T Consensus 121 --SFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 121 --SFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred --cccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 5679999999999998888872 24565555543322 34555 4589999999999999999999999999999999
Q ss_pred CCCcE-EEEEe-CCcEEEEeCC--CcEEEEeecCCC---------CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 330 YENQL-FLTFR-NRTVAVWNFR--GELVTSFEDHLL---------WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 330 pdg~l-laS~s-D~TIklWd~~--G~ll~tl~gH~~---------~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
|-... |+|++ |++||+||++ --|..+|+.|.. ....+.|+++||++||.+|++.+.
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----------- 266 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----------- 266 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC-----------
Confidence 98886 56777 9999999996 468899988872 222355899999999999999887
Q ss_pred CCeEEEEeCCCCeE
Q 011452 397 AGSINISNILTGKC 410 (485)
Q Consensus 397 DgtIklWdl~TGk~ 410 (485)
|..+++|+...|+-
T Consensus 267 d~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 267 DDRIRVWNMESGRN 280 (397)
T ss_pred ccceEEeecccCcc
Confidence 78999999998874
No 130
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=5.7e-18 Score=170.96 Aligned_cols=270 Identities=12% Similarity=0.119 Sum_probs=179.7
Q ss_pred EEEEeCCCeEEeeeccc-Cc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec-cCCcCcc
Q 011452 108 VFALAQSGVCAAFCRET-NQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR-RGKPDAG 183 (485)
Q Consensus 108 ias~s~dgtiklW~~~t-G~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~-~G~~~~~ 183 (485)
.++.++|+.|.+|++.+ |+ ++.++.. ......++++|||+.|..++. .+ ..+.+|++. .|++.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~--~~-------~~i~~~~~~~~g~l~-- 71 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVR--PE-------FRVLSYRIADDGALT-- 71 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEEC--CC-------CcEEEEEECCCCceE--
Confidence 44557899999999974 44 5555543 234678999999999877552 22 467778874 45441
Q ss_pred cceeee-ccccCceEEEEeCCCCeEEEEee-CCCcEEEeecCC-Ce---EEEEEcC-CcEEEEEEcCCceEE-EEEcCCC
Q 011452 184 FALFES-ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YT---MLYSISD-KNVQEIKISPGIMLL-IFTKASG 255 (485)
Q Consensus 184 ~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~-g~---~l~tl~~-~~V~~VafSpg~~ll-~sss~~~ 255 (485)
+... .....|..|+|+ |+|+.|.+++ .++.|.+|++++ |. .+..+.+ .....++|+|++..+ ++. ..
T Consensus 72 --~~~~~~~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~--~~ 146 (330)
T PRK11028 72 --FAAESPLPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC--LK 146 (330)
T ss_pred --EeeeecCCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee--CC
Confidence 1111 123467789998 7998877765 489999999963 42 3344433 357789999866544 443 34
Q ss_pred CeeEEEEecCCCeEEE-------EeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECC--CCe--eEEeccc-----
Q 011452 256 HVPLKILSIEDGTVLK-------SFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NFE--LTEVSRT----- 318 (485)
Q Consensus 256 D~tIklWdi~tG~~L~-------tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~--tg~--~~~~l~g----- 318 (485)
+.+|.+||+.+...+. ++.. ......++|+ |++.++.+.. .+++|.+||+. +++ .++.+..
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCC-CCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 5799999998733332 1111 1234578886 7788887876 59999999997 333 3443322
Q ss_pred -CCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 319 -EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 319 -h~~~v~avaFspdg~llaS~s--D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
+..++..++|+|||++|.++. +++|.+|+++ ++. .++.+|..... + .+.++|+|||++|+.++.
T Consensus 225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~-~-p~~~~~~~dg~~l~va~~-------- 293 (330)
T PRK11028 225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTET-Q-PRGFNIDHSGKYLIAAGQ-------- 293 (330)
T ss_pred CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccc-c-CCceEECCCCCEEEEEEc--------
Confidence 122445688999999888874 8999999984 432 23444432110 1 468999999999998875
Q ss_pred cCCCCeEEEEeC--CCCeE
Q 011452 394 EGNAGSINISNI--LTGKC 410 (485)
Q Consensus 394 ~~~DgtIklWdl--~TGk~ 410 (485)
.+++|.+|++ .+|..
T Consensus 294 --~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 294 --KSHHISVYEIDGETGLL 310 (330)
T ss_pred --cCCcEEEEEEcCCCCcE
Confidence 2699999987 45653
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=1.3e-17 Score=174.87 Aligned_cols=325 Identities=13% Similarity=0.091 Sum_probs=236.7
Q ss_pred ccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCC--------eEEeeecccCcEEEEeecCCcccEEE
Q 011452 70 IRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSG--------VCAAFCRETNQRICFLNVTADEVIRS 141 (485)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dg--------tiklW~~~tG~~l~tl~g~~~~~i~s 141 (485)
=+.|..|-.|..-+.|+..-|+ ...+|+|-..| .+|+||..+=+-|..++. -+..|.+
T Consensus 94 e~~Qr~y~GH~ddikc~~vHPd-------------ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~-f~~GV~~ 159 (626)
T KOG2106|consen 94 ERSQRHYLGHNDDIKCMAVHPD-------------RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGF-FDRGVTC 159 (626)
T ss_pred hhhcccccCCCCceEEEeecCC-------------ceeeccCcccccCCCcCCCeeeecccccceeeeeecc-cccccee
Confidence 3567889999998888888887 34444444444 489999877777777775 4557999
Q ss_pred EEEeeC-CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEe
Q 011452 142 LFYNKN-NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVF 220 (485)
Q Consensus 142 v~~spd-g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlW 220 (485)
|+|||- +-.+..+ .|-+.+ +-..+|+.+.+.... ++-.. ..-+...+|.|-+-.++.+++ -+-+-.|
T Consensus 160 vaFsk~~~G~~l~~-vD~s~~------h~lSVWdWqk~~~~~--~vk~s--ne~v~~a~FHPtd~nliit~G-k~H~~Fw 227 (626)
T KOG2106|consen 160 VAFSKINGGSLLCA-VDDSNP------HMLSVWDWQKKAKLG--PVKTS--NEVVFLATFHPTDPNLIITCG-KGHLYFW 227 (626)
T ss_pred eeecccCCCceEEE-ecCCCc------cccchhhchhhhccC--cceec--cceEEEEEeccCCCcEEEEeC-CceEEEE
Confidence 999885 3333333 344455 678899987766522 11111 112335789876777777776 6788999
Q ss_pred ecCCCeEEEEE---c---CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEE
Q 011452 221 DLKNYTMLYSI---S---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL 294 (485)
Q Consensus 221 dl~~g~~l~tl---~---~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ll 294 (485)
++.++.+..+- . ...|.+|.|.+++..++. |++++|-||+..+-+.-++...|.+.+.++... -+++|+
T Consensus 228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg---DS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l--r~Gtll 302 (626)
T KOG2106|consen 228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG---DSGGNILIWSKGTNRISKQVHAHDGGVFSLCML--RDGTLL 302 (626)
T ss_pred EccCCceEEEeeccccccceEEEEEEEcCCCCEEee---cCCceEEEEeCCCceEEeEeeecCCceEEEEEe--cCccEe
Confidence 99998876443 2 257999999998888876 455899999986666666655788888888764 378999
Q ss_pred EEeCCCcEEEEECC--CCe--------------------------------------eEEecccCCCceEEEEEcCCCcE
Q 011452 295 VKQENENLQILDVR--NFE--------------------------------------LTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 295 s~s~D~tIkIWDv~--tg~--------------------------------------~~~~l~gh~~~v~avaFspdg~l 334 (485)
+|+.|..|-+||-. +-+ ...+..||.+..+.++..|+..+
T Consensus 303 SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q 382 (626)
T KOG2106|consen 303 SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ 382 (626)
T ss_pred ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh
Confidence 99999999999821 110 01112478889999999999999
Q ss_pred EEEEe-CCcEEEEeCCCcEEEEe-ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 335 FLTFR-NRTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 335 laS~s-D~TIklWd~~G~ll~tl-~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
|+|++ |++++||| .-+++-+- .+. . +.++.|.|-| .||-|+. .|---+-|.+|...++
T Consensus 383 ~~T~gqdk~v~lW~-~~k~~wt~~~~d--~-----~~~~~fhpsg-~va~Gt~-----------~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN-DHKLEWTKIIED--P-----AECADFHPSG-VVAVGTA-----------TGRWFVLDTETQDLVT 442 (626)
T ss_pred eeeccCcceEEEcc-CCceeEEEEecC--c-----eeEeeccCcc-eEEEeec-----------cceEEEEecccceeEE
Confidence 99999 99999999 54444332 221 2 6799999999 8888886 5877788888744433
Q ss_pred EecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 413 KIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 413 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+ |.++ +.++.|.|+|||.+||-||.|+.|.|+.
T Consensus 443 -~--~~d~------------------------------------~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 443 -I--HTDN------------------------------------EQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred -E--EecC------------------------------------CceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 3 4321 3899999999999999999999999874
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.6e-18 Score=191.05 Aligned_cols=239 Identities=12% Similarity=0.102 Sum_probs=182.4
Q ss_pred CCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC--CcCcccceeeeccccCceEEEEeCCCCeEEEEe
Q 011452 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG--KPDAGFALFESESLKWPGFVEFDDVNGKVLTYS 211 (485)
Q Consensus 134 ~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G--~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~ 211 (485)
.|.+....|.|.|+|+.|.+++.+ +.|++|....- ++. .... +..-+.+++ .++..|++|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsd----------g~ir~~~~~sd~e~P~----ti~~-~g~~v~~ia---~~s~~f~~~ 72 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSD----------GDIRKWKTNSDEEEPE----TIDI-SGELVSSIA---CYSNHFLTG 72 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCC----------CceEEeecCCcccCCc----hhhc-cCceeEEEe---ecccceEEe
Confidence 477778999999999999987743 47888875222 110 0000 111122333 345688999
Q ss_pred eCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecC
Q 011452 212 AQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 212 s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~ 289 (485)
+.|+||.+....+++.--.|. .-++..++|+-+|..+++++ +|-.|||.+..++...+++++|...|..|.|. |.
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaags--dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p~ 149 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGS--DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-PK 149 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeec--CceeEEEEeccccchheeecccCCceeeeeEc-CC
Confidence 999999999998877432221 34789999996555555544 45899999999999999999999999999997 56
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEecccC--------CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecC
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEVSRTE--------FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 359 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~l~gh--------~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH 359 (485)
++.|++++-||+|+|||++++.+..++.+- ...+..++|+|+|-.||.-. |++||+++.. ++....|.+.
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~ 229 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK 229 (933)
T ss_pred CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence 778888899999999999999998887542 22456678999965555555 9999999996 8888888765
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
... ..+..+.|||+|+|||+++. ||-|-|||++|
T Consensus 230 ~~s---s~~~~~~wsPnG~YiAAs~~-----------~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 LSS---SKFSDLQWSPNGKYIAASTL-----------DGQILVWNVDT 263 (933)
T ss_pred ccc---cceEEEEEcCCCcEEeeecc-----------CCcEEEEeccc
Confidence 433 22788999999999999987 79999999986
No 133
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.83 E-value=3.8e-19 Score=184.06 Aligned_cols=245 Identities=14% Similarity=0.157 Sum_probs=182.2
Q ss_pred ecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec--------cCCcCcccceeeeccccCceEEEEeCC
Q 011452 132 NVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR--------RGKPDAGFALFESESLKWPGFVEFDDV 203 (485)
Q Consensus 132 ~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~--------~G~~~~~~~lf~~~~~~~~~~V~Fs~p 203 (485)
...|++-|+.+-|-|++..||.+- +.. ..+.|||.. .|++..-..|+.++.-+ ..++|+..
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~---t~~------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg--~glsWn~~ 188 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATK---TSS------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG--YGLSWNRQ 188 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEec---CCC------CCEEEEEeccCCCcccccccCCCceEEEeecccc--cccccccc
Confidence 345888999999999999887633 222 578899862 12222212455553212 24677655
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeE---------EEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecC--CCeEEE
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTM---------LYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE--DGTVLK 271 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~---------l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~--tG~~L~ 271 (485)
.--.|++++.|++|.+||+..+.. .++.|...|.+|+|+| ...+..+.+ .|+.+.|||+. +-++-+
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~--dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG--DDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec--CCCeEEEEEcCCCCCCCcc
Confidence 555788999999999999985443 2333556899999997 555555544 45899999999 556667
Q ss_pred EeecCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcCCCcE-EEEEe-CCcEEEEe
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWN 347 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFspdg~l-laS~s-D~TIklWd 347 (485)
+-..|...+.+|+|. |+++.+++ +|.|+||+|||+++- +++.++.+|...|..|-|||.... |||++ |+.+.|||
T Consensus 267 ~~~ah~~~vn~~~fn-p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFN-PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred cccccCCceeEEEeC-CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 778999999999998 55666555 579999999999984 578999999999999999997765 55556 99999999
Q ss_pred CC--CcE-------------EEEeecCCCCCCCCCeeEEEECCCCCEE-EEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 348 FR--GEL-------------VTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 348 ~~--G~l-------------l~tl~gH~~~~~~~~v~svafSpDG~~L-aS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
+. |+. +.+=-||..- |+.+.+.|+--++ +|.+. |+++.||...
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~k-----V~DfsWnp~ePW~I~Svae-----------DN~LqIW~~s 404 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAK-----VSDFSWNPNEPWTIASVAE-----------DNILQIWQMA 404 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccc-----cccccCCCCCCeEEEEecC-----------CceEEEeecc
Confidence 84 543 4566788877 9999999987554 45443 8999999854
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=6.4e-19 Score=194.18 Aligned_cols=232 Identities=12% Similarity=0.139 Sum_probs=186.7
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCC-eEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE---E
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV---L 270 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g-~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~---L 270 (485)
.|.|+ |+|..|.+++.|+-||+|+..+- +.-.++ ++..|.+++---+ .++++ +.++||.+..+..|+. |
T Consensus 18 ~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~---s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 18 LICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTG---SEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred EEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEe---eccceEEEeeCCCCCcccee
Confidence 68997 79999999999999999996554 222233 4567777776544 55544 3458999998887764 5
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
..|+ -.+..++|+ -+|..+++||+|-.|||-++.++....++++|...|.++.|.|.+.+||+++ ||+|++||++
T Consensus 93 ~Rft---lp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 93 ARFT---LPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeee---ccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 5555 467888987 5677888899999999999999999999999999999999999999999999 9999999996
Q ss_pred -CcEEEEeecCCCC---CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 350 -GELVTSFEDHLLW---HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 350 -G~ll~tl~gH~~~---~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
|.+..+|.+-..- ...-.+.-++|+|+|-.++-.+- |++|++++..+.+.+.+|+....
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-----------d~~Vkvy~r~~we~~f~Lr~~~~------ 231 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-----------DNTVKVYSRKGWELQFKLRDKLS------ 231 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-----------CCeEEEEccCCceeheeeccccc------
Confidence 9999888763321 00122467899999655555554 79999999999999999988542
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.+ .+..++|||.|++||++.-||.|-|||
T Consensus 232 -------------------ss-----------~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 232 -------------------SS-----------KFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred -------------------cc-----------ceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 01 578899999999999999999999998
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.3e-19 Score=174.84 Aligned_cols=235 Identities=11% Similarity=0.067 Sum_probs=175.9
Q ss_pred cCEEEEEeCCCeEEeeecccC---cEEEEeecCCcccEEEEEEee--CCCEEEEEEeecCCCCcccceeEEEEeEeccCC
Q 011452 105 RDIVFALAQSGVCAAFCRETN---QRICFLNVTADEVIRSLFYNK--NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG---~~l~tl~g~~~~~i~sv~~sp--dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~ 179 (485)
|..||+.|.|++||+|....+ ++|.+|.| |.++|+-|+|-- .|..|||+| .| +.+-||.-..|+
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLAScs----YD------gkVIiWke~~g~ 91 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASCS----YD------GKVIIWKEENGR 91 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEee----cC------ceEEEEecCCCc
Confidence 899999999999999997653 57889998 999999999944 799999988 45 689999977776
Q ss_pred cCcccceeee-ccccCceEEEEeCCC--CeEEEEeeCCCcEEEeecCCC--eEEEEE---cCCcEEEEEEcCC---ceEE
Q 011452 180 PDAGFALFES-ESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNY--TMLYSI---SDKNVQEIKISPG---IMLL 248 (485)
Q Consensus 180 ~~~~~~lf~~-~~~~~~~~V~Fs~pn--G~~Las~s~D~tiKlWdl~~g--~~l~tl---~~~~V~~VafSpg---~~ll 248 (485)
..+ +.+. .|...+.+|+|- |+ |-+||++|.||+|.|.+.++- .....+ |.-.|++|.+.|. +-+.
T Consensus 92 w~k---~~e~~~h~~SVNsV~wa-pheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 92 WTK---AYEHAAHSASVNSVAWA-PHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred hhh---hhhhhhhcccceeeccc-ccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 532 2222 244556789996 44 789999999999999998743 222222 3447889998885 2221
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eEEecccCCCceEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE--LTEVSRTEFMTPSAF 326 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~--~~~~l~gh~~~v~av 326 (485)
-. +.. ..-.+|++++.|.+||||+..+++ +-++|++|.++|+.|
T Consensus 168 ~~---------------------------~~~-------~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 168 DQ---------------------------GPA-------AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDV 213 (299)
T ss_pred cc---------------------------Ccc-------cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhh
Confidence 00 000 002578889999999999999874 445699999999999
Q ss_pred EEcCCC----cEEEEEe-CCcEEEEeCCC--c-EE-EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 327 IFLYEN----QLFLTFR-NRTVAVWNFRG--E-LV-TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 327 aFspdg----~llaS~s-D~TIklWd~~G--~-ll-~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
|+.|.- ..+||+| ||+|-||..+. + -. +.|+.-. +.++.+.||+.|.+|+-++. |
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~-----~~~w~vSWS~sGn~LaVs~G-----------d 277 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP-----DVVWRVSWSLSGNILAVSGG-----------D 277 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC-----cceEEEEEeccccEEEEecC-----------C
Confidence 999865 5699999 99999998742 2 11 1222211 33899999999999998876 7
Q ss_pred CeEEEEe
Q 011452 398 GSINISN 404 (485)
Q Consensus 398 gtIklWd 404 (485)
+.|.||-
T Consensus 278 Nkvtlwk 284 (299)
T KOG1332|consen 278 NKVTLWK 284 (299)
T ss_pred cEEEEEE
Confidence 9999995
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.1e-19 Score=197.43 Aligned_cols=228 Identities=12% Similarity=0.216 Sum_probs=180.4
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCC---CeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~---g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
|.+..-+.++||+++..|.|-+|||.- .++++.+. ...|..+.|++ --.+++++ +.|++||+||+..-+-..
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG--SQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG--SQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec--CCCceEEEEeeecccccc
Confidence 444434568999999999999999975 34555664 45799999995 44455554 456999999999988889
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
++.+....++.|.|++-.+.+++++.+.|++++||++. .+|...+..|.+.|.++-++|++.+||||+ |++|||||.+
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 99988888999999977788888899999999999995 467777899999999999999999999999 9999999996
Q ss_pred -Cc--EEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCCe-EEEEecCCCCCCCCc
Q 011452 350 -GE--LVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGSINISNILTGK-CLAKIRASNGLPAEN 424 (485)
Q Consensus 350 -G~--ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk-~l~tl~gH~~~~~~~ 424 (485)
++ .+.+.+ +.. .|..|.|=|+-+ .||+++. ..|-.|+||||.--- .-+++..|++
T Consensus 251 ~~~~~~~~tIn--Tia----pv~rVkWRP~~~~hLAtcsm---------v~dtsV~VWDvrRPYIP~~t~~eH~~----- 310 (839)
T KOG0269|consen 251 DSRAKPKHTIN--TIA----PVGRVKWRPARSYHLATCSM---------VVDTSVHVWDVRRPYIPYATFLEHTD----- 310 (839)
T ss_pred CCCccceeEEe--ecc----eeeeeeeccCccchhhhhhc---------cccceEEEEeeccccccceeeeccCc-----
Confidence 44 333443 222 278899999765 4666665 357899999986321 3467777773
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC-CCCEEEEecCCCcE
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE-DRNEIYTGNRHGLV 480 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp-Dg~~LaSgs~DgtV 480 (485)
.|+.++|.. |...|-|+|.|++|
T Consensus 311 ---------------------------------~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 311 ---------------------------------SVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred ---------------------------------cccceeccCCCceeeEeecCccHH
Confidence 677788876 67789999999987
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.2e-19 Score=182.71 Aligned_cols=257 Identities=13% Similarity=0.198 Sum_probs=192.7
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee-CCCcEEEeecCCCeEE--EEEcCCcEEEEEEcCC
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTML--YSISDKNVQEIKISPG 244 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~g~~l--~tl~~~~V~~VafSpg 244 (485)
+++.+||+++|... --|.....--..+..- .++++|+++. .-.-+-+|.+...... +-.....|.+++-+|.
T Consensus 18 ~~~~~~dl~TGt~~---~~ykg~~~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 18 INCIVWDLRTGTSL---LQYKGSYLAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cceeEEecCCCcee---EEecCcccccchhhhh--hchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 66889999999761 1122110000011111 3456777664 3457889987644322 2333568999999997
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC---------CCeeEEe
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---------NFELTEV 315 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~---------tg~~~~~ 315 (485)
|.++.++... +.|.||.+.+|++|..+..|-..+..+.|+ .|+..++++|.|+-|.+|++- +-+.+..
T Consensus 93 G~~l~ag~i~--g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 93 GYFLLAGTIS--GNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred ceEEEeeccc--CcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 7777664333 689999999999999999999999999997 678899999999999999764 2357888
Q ss_pred cccCCCceEEEEEcCC--CcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCC
Q 011452 316 SRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDP 391 (485)
Q Consensus 316 l~gh~~~v~avaFspd--g~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~ 391 (485)
+.+|+..|..+-..+. .-+|+|+| |+|||+||+. |.++.++.--. .+.++++.|-+..+..|+.
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------si~av~lDpae~~~yiGt~------ 237 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------SIKAVALDPAERVVYIGTE------ 237 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC------cceeEEEcccccEEEecCC------
Confidence 9999999999987665 45688999 9999999996 99998876432 2789999999999988876
Q ss_pred CCcCCCCeEEEEeCCC----------------CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcc
Q 011452 392 LAEGNAGSINISNILT----------------GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEA 455 (485)
Q Consensus 392 ~~~~~DgtIklWdl~T----------------Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (485)
+|.|-+-++.+ +..+..+.||.+ .
T Consensus 238 -----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-------------------------~---------- 277 (476)
T KOG0646|consen 238 -----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-------------------------E---------- 277 (476)
T ss_pred -----cceEEeeehhcCCcccccccccccccccceeeeeccccC-------------------------C----------
Confidence 68877666532 234455566653 1
Q ss_pred cCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 456 LEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 456 l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|++|+++-||..|+||+.||+|.|||.
T Consensus 278 -~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 278 -SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 28999999999999999999999999984
No 138
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.3e-18 Score=174.20 Aligned_cols=234 Identities=13% Similarity=0.167 Sum_probs=187.6
Q ss_pred ccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCC--EEEEEEeecCCCCcccceeEE
Q 011452 93 RKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNND--SLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 93 ~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~--~Las~S~d~~~d~stL~~~t~ 170 (485)
-|..+|.+++.++-++||||.|-||++||.++.+.+..|-- |.+.|.++-|.|+-. -|++++ +| +.+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~s----dD------G~i 109 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGS----DD------GHI 109 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeec----CC------CcE
Confidence 47889999999999999999999999999999999998876 888999999999874 577766 55 688
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEE
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLL 248 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp-g~~ll 248 (485)
-+|+. |.... ...+. .|.+.+.+++.. |.|++-.|-+.|+++++|||-+|+--+.+. .+.-..|.|+| |..++
T Consensus 110 ~iw~~--~~W~~-~~slK-~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 110 IIWRV--GSWEL-LKSLK-AHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV 184 (362)
T ss_pred EEEEc--CCeEE-eeeec-ccccccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence 89985 33210 11122 244557789996 899999999999999999999998655553 33334499998 44465
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
+..+ .-|-+|-+++-.+...+.- ..++-.+-|. ++++|++|++|++|++||-.+..+...+.+|..+|-++.+
T Consensus 185 v~~~----~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 185 VSGR----NKIDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred EEec----cEEEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 5533 4789999988777666652 1335566663 4789999999999999999999999999999999999985
Q ss_pred --cCCCcEEEEEe-CCcEEEEeCC
Q 011452 329 --LYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 329 --spdg~llaS~s-D~TIklWd~~ 349 (485)
.|++.+|+|+| ||.|++||++
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EecCCceEEEEeccCceEEEEEcc
Confidence 58899999999 9999999996
No 139
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=2.1e-17 Score=166.89 Aligned_cols=263 Identities=11% Similarity=0.143 Sum_probs=175.8
Q ss_pred eEEEEeEecc-CCcCcccceeeeccccCceEEEEeCCCCeEEEEe-eCCCcEEEeecC-CCeE--EEEEc-CCcEEEEEE
Q 011452 168 RSTRIEYIRR-GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLK-NYTM--LYSIS-DKNVQEIKI 241 (485)
Q Consensus 168 ~t~~lw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~-s~D~tiKlWdl~-~g~~--l~tl~-~~~V~~Vaf 241 (485)
+++.+|++.+ |++.. ...+. ....+..++|+ |||++|..+ ..++.|.+|++. +|++ +.++. ......|+|
T Consensus 12 ~~I~~~~~~~~g~l~~-~~~~~--~~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~ 87 (330)
T PRK11028 12 QQIHVWNLNHEGALTL-LQVVD--VPGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST 87 (330)
T ss_pred CCEEEEEECCCCceee-eeEEe--cCCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence 5888888853 55421 11222 23456689998 799987554 458999999996 4553 33333 345678999
Q ss_pred cCCceEEEEEcCCCCeeEEEEecC-CCe---EEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeeEE-
Q 011452 242 SPGIMLLIFTKASGHVPLKILSIE-DGT---VLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-FELTE- 314 (485)
Q Consensus 242 Spg~~ll~sss~~~D~tIklWdi~-tG~---~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~t-g~~~~- 314 (485)
+|++..+..+.. .++.|.+|+++ +|. .+..+.++ .+...++|. |++..++++. .+++|.+||+.+ +.+..
T Consensus 88 ~~~g~~l~v~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~-p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 88 DHQGRFLFSASY-NANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANID-PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred CCCCCEEEEEEc-CCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeC-CCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 987765555443 35899999996 343 34444432 234567775 6788887765 789999999987 43321
Q ss_pred -----ecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC---Cc--EEEEeecCCC--CCCCCCeeEEEECCCCCEE
Q 011452 315 -----VSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GE--LVTSFEDHLL--WHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 315 -----~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~~---G~--ll~tl~gH~~--~~~~~~v~svafSpDG~~L 380 (485)
... ....+..++|+|||++|.++. +++|.+|+++ |+ ++.++..+.. ..+. ....+.|+|||++|
T Consensus 165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~i~~~pdg~~l 242 (330)
T PRK11028 165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR-WAADIHITPDGRHL 242 (330)
T ss_pred CCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc-cceeEEECCCCCEE
Confidence 111 124578899999999987776 8999999995 33 3555543211 0011 13469999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeE
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDIT 460 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 460 (485)
..+.. .+++|.+|++.+.....++.+|... . ...+
T Consensus 243 yv~~~----------~~~~I~v~~i~~~~~~~~~~~~~~~-------------------------~----------~~p~ 277 (330)
T PRK11028 243 YACDR----------TASLISVFSVSEDGSVLSFEGHQPT-------------------------E----------TQPR 277 (330)
T ss_pred EEecC----------CCCeEEEEEEeCCCCeEEEeEEEec-------------------------c----------ccCC
Confidence 99865 2689999999654333355555310 0 1345
Q ss_pred EEEEcCCCCEEEEecC-CCcEEEcc
Q 011452 461 ALFYDEDRNEIYTGNR-HGLVHVWS 484 (485)
Q Consensus 461 sl~fspDg~~LaSgs~-DgtVklWd 484 (485)
.++|+|||++|++++. +++|.+|+
T Consensus 278 ~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 278 GFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEE
Confidence 6899999999998886 99999996
No 140
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=2.9e-18 Score=180.87 Aligned_cols=234 Identities=12% Similarity=0.064 Sum_probs=164.9
Q ss_pred CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeecccc
Q 011452 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (485)
Q Consensus 114 dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~ 193 (485)
+..+.+||.+ |....++.. +...+.++.|||||+.||.+|.+. .+ .++.+|++.+|+.. .+.. ...
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~-~~~~v~~p~wSPDG~~la~~s~~~-~~------~~i~i~dl~tg~~~----~l~~-~~g 248 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNR-SSQPLMSPAWSPDGSKLAYVSFEN-KK------SQLVVHDLRSGARK----VVAS-FRG 248 (429)
T ss_pred eEEEEEECCC-CCCceEecc-CCCccccceEcCCCCEEEEEEecC-CC------cEEEEEeCCCCceE----EEec-CCC
Confidence 5799999987 655666766 666899999999999999988533 23 57899999888641 1222 112
Q ss_pred CceEEEEeCCCCeEEEEee-CCCcEEEe--ecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC-C
Q 011452 194 WPGFVEFDDVNGKVLTYSA-QDSIYKVF--DLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIED-G 267 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s-~D~tiKlW--dl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t-G 267 (485)
+...++|+ |||+.|++++ .|+.++|| |+.++++ ..+. ...+.+++|||++..+++.+. .++..+||++.. |
T Consensus 249 ~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~-~~g~~~I~~~~~~~ 325 (429)
T PRK01742 249 HNGAPAFS-PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSD-RSGSPQVYRMSASG 325 (429)
T ss_pred ccCceeEC-CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEEC-CCCCceEEEEECCC
Confidence 34478998 7999888865 68877766 6666654 3343 345788999997765444332 346678886542 2
Q ss_pred eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEE
Q 011452 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 346 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklW 346 (485)
.....+ ++.. ..++|+ |++.+|++.+.++.++ ||+.++++.....++ ...++.|+|||++|+.++ ++.+++|
T Consensus 326 ~~~~~l-~~~~--~~~~~S-pDG~~ia~~~~~~i~~-~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 326 GGASLV-GGRG--YSAQIS-ADGKTLVMINGDNVVK-QDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred CCeEEe-cCCC--CCccCC-CCCCEEEEEcCCCEEE-EECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 222333 3322 346675 7888888877766554 999999876544333 345678999999999999 9988888
Q ss_pred eC---CCcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 347 NF---RGELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 347 d~---~G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
.+ +|++++.|.+|... ++.++|||-
T Consensus 399 ~~~~~~G~~~~~l~~~~g~-----~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRFKARLPGSDGQ-----VKFPAWSPY 426 (429)
T ss_pred EEEECCCCceEEccCCCCC-----CCCcccCCC
Confidence 75 59999999988765 788899884
No 141
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=6.2e-17 Score=169.80 Aligned_cols=314 Identities=13% Similarity=0.125 Sum_probs=234.4
Q ss_pred ccceEEEEEe----cCEEEEE--eCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 95 RSKIIEIVAA----RDIVFAL--AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 95 ~s~V~~i~~s----~~~ias~--s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
...|..|+|| |..|.+. +.+..+.+||-+.+..+....- .+++|--..|.|-+..|+.. .| . .
T Consensus 154 ~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-sne~v~~a~FHPtd~nliit--~G--k------~ 222 (626)
T KOG2106|consen 154 DRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-SNEVVFLATFHPTDPNLIIT--CG--K------G 222 (626)
T ss_pred cccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee-ccceEEEEEeccCCCcEEEE--eC--C------c
Confidence 4568889998 6666554 4567888999888887776654 56789999999987766552 22 2 3
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCce
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIM 246 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ 246 (485)
.+-+|+.+.|-+...+.+|+....+++-+|.|. +||++++ |..+|+|-||+..+.+..+.. |+..|.++..--+|+
T Consensus 223 H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-engdviT-gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt 300 (626)
T KOG2106|consen 223 HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENGDVIT-GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT 300 (626)
T ss_pred eEEEEEccCCceEEEeeccccccceEEEEEEEc-CCCCEEe-ecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc
Confidence 677899888888777788987444888899997 7999865 667999999998877766555 456899999888999
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEE-----------------------------------------EeecCCcceeEEEE
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLK-----------------------------------------SFNHLLHRNKKVDF 285 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~-----------------------------------------tl~~~~~~~~~V~f 285 (485)
|++. ..|..|-+||- +=+.++ +-.+|....+.++-
T Consensus 301 llSG---gKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 301 LLSG---GKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred Eeec---CccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 9873 46689999982 211111 11255666677776
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCC
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 363 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~ 363 (485)
. |+.+++++++.|++++||+ . .++ +..+--.+.+.++.|.|-| .+|-|. -|---+-|.+ -.+++.=.+ ...
T Consensus 377 h-ps~~q~~T~gqdk~v~lW~-~-~k~-~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~- 449 (626)
T KOG2106|consen 377 H-PSKNQLLTCGQDKHVRLWN-D-HKL-EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQ- 449 (626)
T ss_pred C-CChhheeeccCcceEEEcc-C-Cce-eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCc-
Confidence 5 6678899999999999999 2 222 2222234578899999999 888888 8877788887 445444333 333
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 364 ~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
++.|.|+|||.+||-||. |+.|.|+-+.. |..+....-|..
T Consensus 450 ----ls~v~ysp~G~~lAvgs~-----------d~~iyiy~Vs~~g~~y~r~~k~~g----------------------- 491 (626)
T KOG2106|consen 450 ----LSVVRYSPDGAFLAVGSH-----------DNHIYIYRVSANGRKYSRVGKCSG----------------------- 491 (626)
T ss_pred ----eEEEEEcCCCCEEEEecC-----------CCeEEEEEECCCCcEEEEeeeecC-----------------------
Confidence 899999999999999998 79999999865 444444444431
Q ss_pred ccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..|+.|.||+|+++|.|-|-|-.|-.|.
T Consensus 492 --------------s~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 492 --------------SPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred --------------ceeEEeeecCCCceEEeccCceEEEEEc
Confidence 2899999999999999999999998883
No 142
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1e-17 Score=176.82 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=151.1
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC---CcEEEeecCCCeE--EEEEcCCcEEEEEEc
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTM--LYSISDKNVQEIKIS 242 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D---~tiKlWdl~~g~~--l~tl~~~~V~~VafS 242 (485)
..+.|||. +|.-. +.+.. +...+.++.|+ |||+.||+.+.+ .+|.+||+.+|+. +..+.+ ....++||
T Consensus 184 ~~i~i~d~-dg~~~--~~lt~--~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wS 256 (429)
T PRK01742 184 YEVRVADY-DGFNQ--FIVNR--SSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFS 256 (429)
T ss_pred EEEEEECC-CCCCc--eEecc--CCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeEC
Confidence 68889995 45421 12222 22345688998 799999998754 4799999998863 433433 34579999
Q ss_pred CCce-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeeEEecccC
Q 011452 243 PGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-FELTEVSRTE 319 (485)
Q Consensus 243 pg~~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~t-g~~~~~l~gh 319 (485)
|++. ++.+.+.++...|.+||+.+|++ ..+..+...+..++|+ |++.+|+..+ .+++.+||++.. +...+.+ ++
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 9765 44443333323455668877764 5566665667789997 7888888765 688999998753 2222333 44
Q ss_pred CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 320 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
.. ....|+|||+.|+..+ ++.+ +||+. |+.......+. ..++.|+|||++|+.++. +
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~i~-~~Dl~~g~~~~lt~~~~-------~~~~~~sPdG~~i~~~s~-----------~ 392 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDNVV-KQDLTSGSTEVLSSTFL-------DESPSISPNGIMIIYSST-----------Q 392 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCCEE-EEECCCCCeEEecCCCC-------CCCceECCCCCEEEEEEc-----------C
Confidence 43 4567999999999888 7655 59996 76543323321 356889999999999986 5
Q ss_pred CeEEEEeC--CCCeEEEEecCCC
Q 011452 398 GSINISNI--LTGKCLAKIRASN 418 (485)
Q Consensus 398 gtIklWdl--~TGk~l~tl~gH~ 418 (485)
+.+++|++ .+|+++++|.+|.
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred CCceEEEEEECCCCceEEccCCC
Confidence 77787775 4699999999886
No 143
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1.4e-18 Score=185.85 Aligned_cols=296 Identities=14% Similarity=0.111 Sum_probs=194.7
Q ss_pred cCEEEEEeCCCeEEeeecccCcE------EEEeecCCcccEEEEEEeeCCCE-EEEEEeecCCCCcccceeEEEEeEecc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQR------ICFLNVTADEVIRSLFYNKNNDS-LITVSVYASDNFSSLRCRSTRIEYIRR 177 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~------l~tl~g~~~~~i~sv~~spdg~~-Las~S~d~~~d~stL~~~t~~lw~i~~ 177 (485)
..+||.+.+||-|.|+|..+-+. +.... .|.++|..|.+=| |+. |+++| .| +|+++||+..
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wap-ge~~lVsas----GD------sT~r~Wdvk~ 131 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAP-GESLLVSAS----GD------STIRPWDVKT 131 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccc-cccceeEeeccCC-CceeEEEcc----CC------ceeeeeeecc
Confidence 58999999999999999764321 34443 4999999999999 665 55544 35 7999999999
Q ss_pred CCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-Ce-EEEEEcCCcE----EEEEEcCCceEEEEE
Q 011452 178 GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YT-MLYSISDKNV----QEIKISPGIMLLIFT 251 (485)
Q Consensus 178 G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~-~l~tl~~~~V----~~VafSpg~~ll~ss 251 (485)
++++.+...++ |.+.+.+++|.+-|--++++|+.|+.|+|||+.- +. .+..+ ...+ ..-. .|..-+.
T Consensus 132 s~l~G~~~~~G--H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~-~~~~~~~~n~~p-tpskp~~--- 204 (720)
T KOG0321|consen 132 SRLVGGRLNLG--HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF-DNRIYGRHNTAP-TPSKPLK--- 204 (720)
T ss_pred ceeecceeecc--cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH-hhhhhccccCCC-CCCchhh---
Confidence 99876554444 4566678999877888999999999999999752 21 11000 0000 0000 1111110
Q ss_pred cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeE------Eec--ccC---
Q 011452 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNFELT------EVS--RTE--- 319 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~-D~tIkIWDv~tg~~~------~~l--~gh--- 319 (485)
.-++=|-...+ ++. ..|..|.| +|+..|+++|. |++||+||++...+. ... ..|
T Consensus 205 -----kr~~k~kA~s~----ti~---ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr 270 (720)
T KOG0321|consen 205 -----KRIRKWKAASN----TIF---SSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR 270 (720)
T ss_pred -----ccccccccccC----cee---eeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc
Confidence 11111211111 111 23455666 67888888875 999999999976542 221 223
Q ss_pred CCceEEEEEcCCC-cEEEEEeCCcEEEEeCCCc---EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 320 FMTPSAFIFLYEN-QLFLTFRNRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 320 ~~~v~avaFspdg-~llaS~sD~TIklWd~~G~---ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
...+.+++.-.-| .++|++.|++|-.||+.+. .+..+.||... ..-..-..|||+++|+||+.
T Consensus 271 s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~---sf~vks~lSpd~~~l~SgSs---------- 337 (720)
T KOG0321|consen 271 SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS---SFYVKSELSPDDCSLLSGSS---------- 337 (720)
T ss_pred eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc---eeeeeeecCCCCceEeccCC----------
Confidence 2234445443333 5556666999999999533 56677777642 11223446999999999987
Q ss_pred CCCeEEEEeCCCCe-EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEE
Q 011452 396 NAGSINISNILTGK-CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYT 473 (485)
Q Consensus 396 ~DgtIklWdl~TGk-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaS 473 (485)
|.-..+|.+.+-+ -+..+.||+ ..|++|.+.|--- -+||
T Consensus 338 -d~~ayiw~vs~~e~~~~~l~Ght--------------------------------------~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 338 -DEQAYIWVVSSPEAPPALLLGHT--------------------------------------REVTTVRWLPSATTPVAT 378 (720)
T ss_pred -CcceeeeeecCccCChhhhhCcc--------------------------------------eEEEEEeeccccCCCcee
Confidence 7899999998754 456677886 2799999977432 3666
Q ss_pred ecCCCcEEEccC
Q 011452 474 GNRHGLVHVWSN 485 (485)
Q Consensus 474 gs~DgtVklWd~ 485 (485)
+|+|-+|+||++
T Consensus 379 cSdD~~~kiW~l 390 (720)
T KOG0321|consen 379 CSDDFRVKIWRL 390 (720)
T ss_pred eccCcceEEEec
Confidence 799999999985
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.2e-17 Score=167.08 Aligned_cols=258 Identities=13% Similarity=0.127 Sum_probs=180.6
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc-cceeeeccccCceEEEEeCCC-CeE
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-FALFESESLKWPGFVEFDDVN-GKV 207 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~-~~lf~~~~~~~~~~V~Fs~pn-G~~ 207 (485)
++..+|.+.|.+|.|++-|+.+|++|.| ++++|||...+.-+-. ..-|. .|-+.++.|.+-+|. ||+
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsD----------q~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSD----------QTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCC----------CcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccce
Confidence 5556689999999999999999998853 5999999743332100 00122 234556677775554 999
Q ss_pred EEEeeCCCcEEEeecC--C----Ce---EEEEEcC--CcEEEEEEcC---CceEEEEEcCCCCeeEEEEecCCCeEEE--
Q 011452 208 LTYSAQDSIYKVFDLK--N----YT---MLYSISD--KNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTVLK-- 271 (485)
Q Consensus 208 Las~s~D~tiKlWdl~--~----g~---~l~tl~~--~~V~~VafSp---g~~ll~sss~~~D~tIklWdi~tG~~L~-- 271 (485)
+|++|.|+|++||.-. + |. ...++.+ ..|.+|.|.| |-++++. +.|++|||++..+--.|.
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~---~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA---SADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe---ccCcEEEEEecCCccccccc
Confidence 9999999999999742 1 11 2455554 4799999998 5555544 345899999765432222
Q ss_pred ----Eee-------cCCcceeEEEEEe--cCCCEEEEEeCC-----CcEEEEECC-CC-ee--EEecccCCCceEEEEEc
Q 011452 272 ----SFN-------HLLHRNKKVDFIE--QFNEKLLVKQEN-----ENLQILDVR-NF-EL--TEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 272 ----tl~-------~~~~~~~~V~f~~--~~~~~lls~s~D-----~tIkIWDv~-tg-~~--~~~l~gh~~~v~avaFs 329 (485)
.+. .+...-.+|.+.+ -....|++|+.+ +.++||.-. ++ ++ +..|.+|.+.|++++|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 222 1223345777752 123456666544 589999754 33 33 45578999999999999
Q ss_pred CC----CcEEEEEe-CCcEEEEeCCC---------------------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 330 YE----NQLFLTFR-NRTVAVWNFRG---------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 330 pd----g~llaS~s-D~TIklWd~~G---------------------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
|. -++||+++ || |+||++.+ +++..|.+|... |+.+.|.=-|..|+|.
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~-----VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE-----VWRVRWNMTGTILSST 306 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc-----eEEEEEeeeeeEEeec
Confidence 95 57899999 99 99999763 235568888755 9999999999999998
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCC---CCeEEEEecCCC
Q 011452 384 CKADSDDPLAEGNAGSINISNIL---TGKCLAKIRASN 418 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~---TGk~l~tl~gH~ 418 (485)
+. ||.||||... .-+|+..+++..
T Consensus 307 Gd-----------DG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 307 GD-----------DGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred CC-----------CceeeehhhhhhhhheeeeEEeccC
Confidence 75 8999999632 256888887654
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=5.4e-18 Score=170.42 Aligned_cols=277 Identities=10% Similarity=0.106 Sum_probs=208.1
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc---ccceeeec-cccCce-----------EEE
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA---GFALFESE-SLKWPG-----------FVE 199 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~---~~~lf~~~-~~~~~~-----------~V~ 199 (485)
+.+...+.-|||||..|.+-|. | ...++|.++.--..+ +...|... ....+. -..
T Consensus 48 p~nf~kgckWSPDGSciL~~se----d------n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~ 117 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSE----D------NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMK 117 (406)
T ss_pred chhhhccceeCCCCceEEeecc----c------CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccc
Confidence 4445667789999999988664 3 367777764322211 11123221 111111 122
Q ss_pred EeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----C---cEEEEEEcCCceEEEEEcCCCCeeEEEEec-CCCeEE-
Q 011452 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----K---NVQEIKISPGIMLLIFTKASGHVPLKILSI-EDGTVL- 270 (485)
Q Consensus 200 Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~---~V~~VafSpg~~ll~sss~~~D~tIklWdi-~tG~~L- 270 (485)
-+.|+-.+.|+++.|.-|++||.-+|++..+++. + .-.+++|||+|..+.++ .-.+||++|+ ..|.--
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG---ykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG---YKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec---ccceEEEeeccCCCCCCc
Confidence 3458889999999999999999999998877763 2 34579999977776653 2379999999 566532
Q ss_pred --EEee----cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCc
Q 011452 271 --KSFN----HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRT 342 (485)
Q Consensus 271 --~tl~----~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~T 342 (485)
.|+. +..+-+..++|+|-+...+++++...++-|+.-..++++.++.||.+.|+-+.|-+||+.|.||+ |-.
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk 274 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK 274 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCe
Confidence 1222 22345668999876666788899999999999999999999999999999999999999999998 999
Q ss_pred EEEEeCC--CcEEEEeecCCCCCCCCCeeEEEE--CCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCC
Q 011452 343 VAVWNFR--GELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRAS 417 (485)
Q Consensus 343 IklWd~~--G~ll~tl~gH~~~~~~~~v~svaf--SpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH 417 (485)
|-.||++ ++.|..|+.|..-. + .-|.| -|+|++||||+. ||.|++||+++ |..+..+..|
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~~T-N---QRI~FDld~~~~~LasG~t-----------dG~V~vwdlk~~gn~~sv~~~~ 339 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVGDT-N---QRILFDLDPKGEILASGDT-----------DGSVRVWDLKDLGNEVSVTGNY 339 (406)
T ss_pred EEEEeehhccchhhhhhhhccCc-c---ceEEEecCCCCceeeccCC-----------CccEEEEecCCCCCcccccccc
Confidence 9999995 89999999997631 1 23555 689999999976 79999999998 8877777777
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 418 NGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
++ -|.+|+++|-=.++||+|-.
T Consensus 340 sd--------------------------------------~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 340 SD--------------------------------------TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cc--------------------------------------cccceecCcccceeeeccCc
Confidence 63 78889999999999988743
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=2.4e-19 Score=194.65 Aligned_cols=193 Identities=12% Similarity=0.182 Sum_probs=160.6
Q ss_pred EEEEEc--CCceEEEEEcCCCCeeEEEEecCC---CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 011452 237 QEIKIS--PGIMLLIFTKASGHVPLKILSIED---GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311 (485)
Q Consensus 237 ~~VafS--pg~~ll~sss~~~D~tIklWdi~t---G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~ 311 (485)
++|+++ ..+.||+++. . +.|-+||+.- -+.|..|+.|...+.+++|++-....|++||.|++||+||++...
T Consensus 91 ~DVkW~~~~~NlIAT~s~-n--G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCST-N--GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred hhcccccchhhhheeecC-C--CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 345555 3555555533 3 7899999976 667789999999999999987777888999999999999999999
Q ss_pred eEEecccCCCceEEEEEcC-CCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCC
Q 011452 312 LTEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFsp-dg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~ 387 (485)
-..++.+....|..|.|+| ++..|+++. .|++++||++ .++...|..|.+. |..+-++|++.+||+|+.
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp-----V~c~nwhPnr~~lATGGR-- 240 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP-----VLCLNWHPNREWLATGGR-- 240 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-----eEEEeecCCCceeeecCC--
Confidence 9999999999999999998 678899999 9999999995 7788999999988 999999999999999986
Q ss_pred CCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCC
Q 011452 388 SDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDED 467 (485)
Q Consensus 388 ~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD 467 (485)
|++|||||..+++.-..+.-|+. ..|..|.|-|+
T Consensus 241 ---------DK~vkiWd~t~~~~~~~~tInTi-------------------------------------apv~rVkWRP~ 274 (839)
T KOG0269|consen 241 ---------DKMVKIWDMTDSRAKPKHTINTI-------------------------------------APVGRVKWRPA 274 (839)
T ss_pred ---------CccEEEEeccCCCccceeEEeec-------------------------------------ceeeeeeeccC
Confidence 89999999876553322222331 28899999999
Q ss_pred CCE-EEEec--CCCcEEEccC
Q 011452 468 RNE-IYTGN--RHGLVHVWSN 485 (485)
Q Consensus 468 g~~-LaSgs--~DgtVklWd~ 485 (485)
.+. |||.| .|-.|+|||+
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred ccchhhhhhccccceEEEEee
Confidence 875 88887 6889999995
No 147
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.4e-17 Score=170.76 Aligned_cols=221 Identities=16% Similarity=0.134 Sum_probs=175.2
Q ss_pred ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCC
Q 011452 176 RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASG 255 (485)
Q Consensus 176 ~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~ 255 (485)
+.|+++...+++.. |...+..++|+|-|..+|||||.|.||+||++.. +.|. . +
T Consensus 66 k~Gr~d~~~P~v~G-Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe--------------------~~l~-~---~- 119 (472)
T KOG0303|consen 66 KTGRMDASYPLVCG-HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPE--------------------NGLT-R---D- 119 (472)
T ss_pred cccccCCCCCCccC-ccccccccccCccCCceeecCCCCceEEEEECCC--------------------cccc-c---C-
Confidence 68888887888874 6777778999988999999999999999999743 2221 0 0
Q ss_pred CeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEE
Q 011452 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF 335 (485)
Q Consensus 256 D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ll 335 (485)
- + +....|.||+.+|.-|+|.+--..-|++++.|.+|.|||+.||+.+-++. |.+.|+++.|+.||.+|
T Consensus 120 -l--------t-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l 188 (472)
T KOG0303|consen 120 -L--------T-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLL 188 (472)
T ss_pred -c--------c-cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCcee
Confidence 0 1 56788999999999999986666788889999999999999999988886 99999999999999999
Q ss_pred EEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC---CeE
Q 011452 336 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT---GKC 410 (485)
Q Consensus 336 aS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T---Gk~ 410 (485)
+|.+ |+.|+|||.+ |+.+..-.+|.+.- -.-+.|-.+|+ |+|.+.+ .-++..|-|||-.. .--
T Consensus 189 ~TtckDKkvRv~dpr~~~~v~e~~~heG~k----~~Raifl~~g~-i~tTGfs-------r~seRq~aLwdp~nl~eP~~ 256 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGTVVSEGVAHEGAK----PARAIFLASGK-IFTTGFS-------RMSERQIALWDPNNLEEPIA 256 (472)
T ss_pred eeecccceeEEEcCCCCcEeeecccccCCC----cceeEEeccCc-eeeeccc-------cccccceeccCcccccCcce
Confidence 9999 9999999996 99999888888752 23567888999 5555542 34568899998543 223
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEec-CCCcEEEcc
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN-RHGLVHVWS 484 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs-~DgtVklWd 484 (485)
+++|-..+ .|.==+|+||-++||-++ -|+.||.+.
T Consensus 257 ~~elDtSn---------------------------------------Gvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 257 LQELDTSN---------------------------------------GVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eEEeccCC---------------------------------------ceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 33443221 677779999999988766 699998764
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.6e-17 Score=162.64 Aligned_cols=239 Identities=10% Similarity=0.128 Sum_probs=176.3
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t 272 (485)
.+..|.|+ |.+..|.-+|.|++++|+|+..-++...+. ++++.+.+|-|....+++ +-|+.||+.|+.+|+..+-
T Consensus 15 ~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G---~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 15 GISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTG---GLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEe---ccCceEEEEEecCCcceee
Confidence 45589999 566666666799999999998877766664 689999999998887765 4568999999999998876
Q ss_pred eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--
Q 011452 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 349 (485)
Q Consensus 273 l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-- 349 (485)
.+ |...+..|.++ +-.+.+++||+|++||+||.++..+..++... ..|.+. +-.|..|+.|. |+.|-+||++
T Consensus 91 gt-h~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 91 GT-HDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCM--DVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cc-CCCceEEEEee-ccCCeEEEcccCccEEEEeccccccccccccC-ceEEEE--eccCCEEEEeecCceEEEEEcccc
Confidence 65 56788999997 55678999999999999999985555554322 255554 55566677766 9999999995
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC----eEEEEecCCCCCCCCcc
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG----KCLAKIRASNGLPAENE 425 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG----k~l~tl~gH~~~~~~~~ 425 (485)
.+..+.-+-.... .+++|++-|++.=.|.+|- ||-|-+=.+.+. +--..|+.|-.
T Consensus 166 ~~~~q~reS~lky----qtR~v~~~pn~eGy~~sSi-----------eGRVavE~~d~s~~~~skkyaFkCHr~------ 224 (323)
T KOG1036|consen 166 DEPFQRRESSLKY----QTRCVALVPNGEGYVVSSI-----------EGRVAVEYFDDSEEAQSKKYAFKCHRL------ 224 (323)
T ss_pred cchhhhcccccee----EEEEEEEecCCCceEEEee-----------cceEEEEccCCchHHhhhceeEEeeec------
Confidence 4444322222111 2899999998887888776 687777655554 22345555642
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+++.. ...| +|.+++|+|--+++|||+.||.|-+||.
T Consensus 225 -------------~~~~~-------~~~y---PVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 225 -------------SEKDT-------EIIY---PVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred -------------ccCCc-------eEEE---EeceeEeccccceEEecCCCceEEEccC
Confidence 11111 1112 8999999999999999999999999984
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.3e-17 Score=167.85 Aligned_cols=281 Identities=10% Similarity=0.101 Sum_probs=213.1
Q ss_pred ccceEEEEEe--cCEEEEEeCCCeEEeeecc--cCcEEEEeecCCcccEEEEEEeeCCC-EEEEEEeecCCCCcccceeE
Q 011452 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~dgtiklW~~~--tG~~l~tl~g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t 169 (485)
-+.|.+|.|- .++|.+++.||+++||.++ ++.+|..+.. -.-+|.+..|.|+|+ .|++++ -. +-
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~----rr------ky 281 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSG----RR------KY 281 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecc----cc------eE
Confidence 3568889998 9999999999999999876 2346777766 566899999999999 555544 23 56
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceE
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIML 247 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp-g~~l 247 (485)
...||+.++|..+-.++.+.+ .......+.+ +++++||..+..|-|-|-..+|++++.+++ ...|.+++||. +.+|
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVE-EKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred EEEeeccccccccccCCCCcc-cchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEE
Confidence 778999999885433344433 1233355666 799999999999999999999999999998 45799999994 6555
Q ss_pred EEEEcCCCCeeEEEEecCCCeEEEEeecCCccee--EEEEEecCCCEEEEEeCCCcEEEEECCC------CeeEEecccC
Q 011452 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVKQENENLQILDVRN------FELTEVSRTE 319 (485)
Q Consensus 248 l~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~--~V~f~~~~~~~lls~s~D~tIkIWDv~t------g~~~~~l~gh 319 (485)
++++ .++.|-+||+..-.|++.|..- +.+. +++. ++++.++++||+-|-|.|||..+ .+++.++..-
T Consensus 360 ~~~~---~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~-S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL 434 (514)
T KOG2055|consen 360 LASG---GTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCI-SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL 434 (514)
T ss_pred EEEc---CCceEEEEecCCcceEEEEeec-Cccceeeeee-cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence 5553 3479999999999999999842 3343 4443 36788899999999999999664 3455555555
Q ss_pred CCceEEEEEcCCCcEEEEEe---CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 320 FMTPSAFIFLYENQLFLTFR---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~s---D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
.-.|+++.|+||+|+||-+| +.++||=.+- -..-..|.... .+-+.|.+++|||.|-+||-|-.
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n--~~vg~vtc~aFSP~sG~lAvGNe---------- 502 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN--TKVGHVTCMAFSPNSGYLAVGNE---------- 502 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC--CcccceEEEEecCCCceEEeecC----------
Confidence 66899999999999999887 7899988764 33222232111 11233899999999999999986
Q ss_pred CCCeEEEEeCC
Q 011452 396 NAGSINISNIL 406 (485)
Q Consensus 396 ~DgtIklWdl~ 406 (485)
+|.+.||.+.
T Consensus 503 -~grv~l~kL~ 512 (514)
T KOG2055|consen 503 -AGRVHLFKLH 512 (514)
T ss_pred -CCceeeEeec
Confidence 7999999763
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=2.4e-17 Score=165.73 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=178.4
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCC--------CeEE----EEE---cCCcEEEEEEc-------CCceEEEEEcCC
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKN--------YTML----YSI---SDKNVQEIKIS-------PGIMLLIFTKAS 254 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~--------g~~l----~tl---~~~~V~~VafS-------pg~~ll~sss~~ 254 (485)
...++ |||.-|.+-+.|.++++|++.. +-+. .++ .+..|.+-.+= |..-|.++++
T Consensus 54 gckWS-PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss-- 130 (406)
T KOG2919|consen 54 GCKWS-PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS-- 130 (406)
T ss_pred cceeC-CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc--
Confidence 45676 8999999999999999999742 1111 111 24455543321 5555555433
Q ss_pred CCeeEEEEecCCCeEEEEee--cCCccee---EEEEEecCCCEEEEEeCCCcEEEEEC-CCCeeEEec-------ccCCC
Q 011452 255 GHVPLKILSIEDGTVLKSFN--HLLHRNK---KVDFIEQFNEKLLVKQENENLQILDV-RNFELTEVS-------RTEFM 321 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L~tl~--~~~~~~~---~V~f~~~~~~~lls~s~D~tIkIWDv-~tg~~~~~l-------~gh~~ 321 (485)
.|.+|+|||..||++..++. .|+..+. +++|+ |||++|.+| ...+||+.|+ +.|.-..+. .|...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 55899999999999999887 4555554 89997 778777665 8899999999 666532222 12366
Q ss_pred ceEEEEEcCCC-cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 322 TPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 322 ~v~avaFspdg-~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
-+.+++|+|-. +++|.++ -+++-|++-. ++++++|-||..- |.-+.|-+||..|.||+.. |-
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG-----vThL~~~edGn~lfsGaRk----------~d 273 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG-----VTHLQWCEDGNKLFSGARK----------DD 273 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC-----eeeEEeccCcCeecccccC----------CC
Confidence 88999999955 4899999 9999999986 8899999999976 9999999999999999984 67
Q ss_pred eEEEEeCC-CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 399 SINISNIL-TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 399 tIklWdl~-TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
.|-.||+. .++.|..|..|.+. +| +.|. ....|+|++||||+.|
T Consensus 274 kIl~WDiR~~~~pv~~L~rhv~~----------------------TN------------QRI~-FDld~~~~~LasG~td 318 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALERHVGD----------------------TN------------QRIL-FDLDPKGEILASGDTD 318 (406)
T ss_pred eEEEEeehhccchhhhhhhhccC----------------------cc------------ceEE-EecCCCCceeeccCCC
Confidence 89999996 46778889888631 11 1443 5678999999999999
Q ss_pred CcEEEccC
Q 011452 478 GLVHVWSN 485 (485)
Q Consensus 478 gtVklWd~ 485 (485)
|.|++||+
T Consensus 319 G~V~vwdl 326 (406)
T KOG2919|consen 319 GSVRVWDL 326 (406)
T ss_pred ccEEEEec
Confidence 99999996
No 151
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.76 E-value=2.8e-17 Score=172.20 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=203.5
Q ss_pred cccccceEEEEEe--cCEEEEEeCCCeEEeeeccc-Cc--EEEE---eecCCcccEEEEEEeeCCCEEEEEEeecCCCCc
Q 011452 92 LRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRET-NQ--RICF---LNVTADEVIRSLFYNKNNDSLITVSVYASDNFS 163 (485)
Q Consensus 92 ~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~t-G~--~l~t---l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~s 163 (485)
|.|..-|.++.++ ...+++++ -|-||+||+.. |. .+.. |+ .++.|||.-+.|||.+|++++. -
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~--rdnyiRSckL~pdgrtLivGGe----a-- 486 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLN--RDNYIRSCKLLPDGRTLIVGGE----A-- 486 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccC--cccceeeeEecCCCceEEeccc----c--
Confidence 5677889999999 78888886 57899999863 11 1222 33 4678999999999999999663 3
Q ss_pred ccceeEEEEeEeccCCcCcccceeeeccccC--c--eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEE
Q 011452 164 SLRCRSTRIEYIRRGKPDAGFALFESESLKW--P--GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQ 237 (485)
Q Consensus 164 tL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~--~--~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~ 237 (485)
-++.|||+..-.+. ...+ +.. + ..++.+ ||.++.-++-.||.|.||||.+..++..|.+ +.+.
T Consensus 487 ----stlsiWDLAapTpr-----ikae-ltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 487 ----STLSIWDLAAPTPR-----IKAE-LTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred ----ceeeeeeccCCCcc-----hhhh-cCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 58889998655441 1111 111 1 247787 7999999999999999999999999999976 5799
Q ss_pred EEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc
Q 011452 238 EIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR 317 (485)
Q Consensus 238 ~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~ 317 (485)
+|.+|++|..+=++ .-|.|||-||+.+|..+..... ...|+++-.. |.++.+++|=+++.+-|...... ....+.
T Consensus 556 cIdis~dGtklWTG--GlDntvRcWDlregrqlqqhdF-~SQIfSLg~c-P~~dWlavGMens~vevlh~skp-~kyqlh 630 (705)
T KOG0639|consen 556 CIDISKDGTKLWTG--GLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKP-EKYQLH 630 (705)
T ss_pred eEEecCCCceeecC--CCccceeehhhhhhhhhhhhhh-hhhheecccC-CCccceeeecccCcEEEEecCCc-cceeec
Confidence 99999766655553 4579999999999987754321 2567777775 67889999999999999887744 445566
Q ss_pred cCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 318 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 318 gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
-|...|-++.|.|-|+.|+|.+ |+-+-.|..- |.-+....... . |.+..+|.|.+||++||.
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S-s-----VlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-S-----VLSCDISFDDKYIVTGSG 694 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC-c-----ceeeeeccCceEEEecCC
Confidence 7889999999999999999999 9999999995 87665544322 2 899999999999999986
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.4e-17 Score=170.69 Aligned_cols=228 Identities=13% Similarity=0.150 Sum_probs=165.4
Q ss_pred CCeEEEEeeCCCcEEEeecCCCe---EEEEE--------------------cCCcEEEEEEcC-CceEEEEEcCCCCeeE
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYT---MLYSI--------------------SDKNVQEIKISP-GIMLLIFTKASGHVPL 259 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~---~l~tl--------------------~~~~V~~VafSp-g~~ll~sss~~~D~tI 259 (485)
-|.++|-|..|..|-||||.=-. ...+| |...|.++++.- -.-+|+|+ +.|+||
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg--saD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG--SADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec--CCCceE
Confidence 47899999999999999986322 11222 112456677773 33344444 456999
Q ss_pred EEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE-EEEE
Q 011452 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL-FLTF 338 (485)
Q Consensus 260 klWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l-laS~ 338 (485)
||||+.+|+|-.++++|...|.+++|.+.-++.||+|+.|+||+|.|.+.-.+....-.-...|..+++.|.... ++.+
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999999888899999999999999999942221111112346888888876654 3344
Q ss_pred e-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 339 R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 339 s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
. ||+|+-.|.+ |+++.++..|... |.+|.+++.-. +|++++. |++||||++.- ..-...
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~-----ISgl~~n~~~p~~l~t~s~-----------d~~Vklw~~~~-~~~~~v 411 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDE-----ISGLSVNIQTPGLLSTAST-----------DKVVKLWKFDV-DSPKSV 411 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCC-----cceEEecCCCCcceeeccc-----------cceEEEEeecC-CCCccc
Confidence 4 9999999995 9999999999987 99999988654 4555554 89999999752 221222
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEEecCCCcEEEccC
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs~DgtVklWd~ 485 (485)
..|. . -+....+.++.|+-. +||.|+..+.+||||+
T Consensus 412 ~~~~------------------------~-----------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 412 KEHS------------------------F-----------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cccc------------------------c-----------cccceeecccCCCcceEEEecCccceEEEeec
Confidence 2332 0 112456677777764 5888889999999985
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=1.6e-17 Score=169.39 Aligned_cols=194 Identities=14% Similarity=0.217 Sum_probs=156.0
Q ss_pred cEEEEEEcC--CceEEEEEcCCCCeeEEEEecCC----------------CeEEEEeecCCcceeEEEEEecCCCEEEEE
Q 011452 235 NVQEIKISP--GIMLLIFTKASGHVPLKILSIED----------------GTVLKSFNHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 235 ~V~~VafSp--g~~ll~sss~~~D~tIklWdi~t----------------G~~L~tl~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
.|+-|.-++ +..++++= +.-+.|+|||+.. -++|.++++|...-+.++|++.-.+.|++|
T Consensus 153 ~~NRvr~~~~~~~~~~asw--se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASW--SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccceeeecccCCcceeeee--cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 455566664 33343332 2337788888742 346788999988889999997667788888
Q ss_pred eCCCcEEEEECCCCee---EEecccCCCceEEEEEcC-CCcEEEEEe-CCcEEEEeCC-C---cEEEEeecCCCCCCCCC
Q 011452 297 QENENLQILDVRNFEL---TEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCN 367 (485)
Q Consensus 297 s~D~tIkIWDv~tg~~---~~~l~gh~~~v~avaFsp-dg~llaS~s-D~TIklWd~~-G---~ll~tl~gH~~~~~~~~ 367 (485)
---+.|++|...+|.- ...+.+|+..|..+.+|| +...|||+| |++|+|||++ | .++.+ +.|..-
T Consensus 231 Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD----- 304 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD----- 304 (440)
T ss_pred ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc-----
Confidence 7889999999999865 334678999999999998 566889999 9999999997 6 35655 788765
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC---CeEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT---GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T---Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
||-|.|+.+--+||||+. ||+++||||.+ |+.+++++-|..
T Consensus 305 VNVISWnr~~~lLasG~D-----------dGt~~iwDLR~~~~~~pVA~fk~Hk~------------------------- 348 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD-----------DGTLSIWDLRQFKSGQPVATFKYHKA------------------------- 348 (440)
T ss_pred eeeEEccCCcceeeecCC-----------CceEEEEEhhhccCCCcceeEEeccC-------------------------
Confidence 999999999889999986 79999999964 788999998873
Q ss_pred ccccccchhcccCCeEEEEEcCC-CCEEEEecCCCcEEEccC
Q 011452 445 ASRIRSTVAEALEDITALFYDED-RNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspD-g~~LaSgs~DgtVklWd~ 485 (485)
.|++|.|+|. ...|+.++.|.+|-|||+
T Consensus 349 -------------pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 349 -------------PITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred -------------CeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 9999999985 467888889999999995
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=8.2e-17 Score=162.15 Aligned_cols=288 Identities=14% Similarity=0.180 Sum_probs=194.4
Q ss_pred eecCCcccEEEEEEeeC-----CCEEEEEEeecCCCCcccceeEEEEeEe-ccCCcCcccceeeec-cccCce---EEE-
Q 011452 131 LNVTADEVIRSLFYNKN-----NDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFESE-SLKWPG---FVE- 199 (485)
Q Consensus 131 l~g~~~~~i~sv~~spd-----g~~Las~S~d~~~d~stL~~~t~~lw~i-~~G~~~~~~~lf~~~-~~~~~~---~V~- 199 (485)
+.-.|+..|..++||+- =+..|+++ - ..+.|... .+| +..+++.- .-.+.. .++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG----~-------~rvtiy~c~~d~----~ir~lq~y~D~d~~Esfytcsw 97 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG----G-------NRVTIYECPGDG----GIRLLQSYADEDHDESFYTCSW 97 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC----C-------cEEEEEEECCcc----ceeeeeeccCCCCCcceEEEEE
Confidence 44457778999999853 23344433 1 35555543 233 23345431 001111 233
Q ss_pred -EeCCC-CeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 200 -FDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 200 -Fs~pn-G~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
++..+ ..+||-++.-|.|||-|+.++++...+ |++.|++|+|.|.. .|+.++| .|.+||||+|+++.|+..|-
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S--kD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS--KDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec--CCceEEEEeccCCeEEEEec
Confidence 33222 468899999999999999999987655 67899999999843 4555544 55899999999999999885
Q ss_pred ---cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec----------------------------ccCCCce
Q 011452 275 ---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS----------------------------RTEFMTP 323 (485)
Q Consensus 275 ---~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l----------------------------~gh~~~v 323 (485)
||-++|.+|+|+ .+++++++++.|++|++|++...+..+-+ .-|.+.|
T Consensus 176 G~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred ccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 788889999997 78899999999999999999854321111 1122223
Q ss_pred EEEEEcCCCcEEEEEe-CCcEEEEeC-C-C---------cEEEEeecCCCCCCCCCeeEEEE--CCCCCEEEEEecCCCC
Q 011452 324 SAFIFLYENQLFLTFR-NRTVAVWNF-R-G---------ELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKADSD 389 (485)
Q Consensus 324 ~avaFspdg~llaS~s-D~TIklWd~-~-G---------~ll~tl~gH~~~~~~~~v~svaf--SpDG~~LaS~s~d~~~ 389 (485)
-++-|. |.+++|=| ++.|-.|-. + + +.-.|.-++-. .+.|.++-|-| .|-++.||.|..
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~~~~la~gnq---- 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPWQKMLALGNQ---- 327 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHHHHHHhhccC----
Confidence 333222 67899988 999999987 3 3 32334434433 35676777765 456899998876
Q ss_pred CCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC
Q 011452 390 DPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN 469 (485)
Q Consensus 390 d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~ 469 (485)
-|+|.+||+..-+.. +..-|. |.+. . ..|+..+||.||.
T Consensus 328 -------~g~v~vwdL~~~ep~-~~ttl~------------------~s~~-----~----------~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 328 -------SGKVYVWDLDNNEPP-KCTTLT------------------HSKS-----G----------STVRQTSFSRDGS 366 (385)
T ss_pred -------CCcEEEEECCCCCCc-cCceEE------------------eccc-----c----------ceeeeeeecccCc
Confidence 699999999764432 111111 1011 1 2899999999999
Q ss_pred EEEEecCCCcEEEcc
Q 011452 470 EIYTGNRHGLVHVWS 484 (485)
Q Consensus 470 ~LaSgs~DgtVklWd 484 (485)
+|+--..|++|--||
T Consensus 367 ~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWD 381 (385)
T ss_pred EEEEEeCCCcEEEEE
Confidence 999999999998887
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=7.7e-17 Score=167.51 Aligned_cols=294 Identities=14% Similarity=0.144 Sum_probs=211.3
Q ss_pred EEeecCCcccEEEEEEeeCCC-EEEEEEeecCCCCcccceeEEEEeEeccCCc-CcccceeeeccccCceEEEEeCCCCe
Q 011452 129 CFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYIRRGKP-DAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t~~lw~i~~G~~-~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
++.-..+...|.+++|.|--. .|+.|+. |.++|-+|++...+. ..+..+|.. +...+..+.|+|.|-.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~Gd---------K~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGD---------KGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTS 248 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEcc---------CCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChh
Confidence 334445778899999999755 5554442 236999999843333 345667775 5566778999987777
Q ss_pred EEEEeeCCCcEEEeecCCCe--EEEEEcC--CcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeE-EEEeecCCcce
Q 011452 207 VLTYSAQDSIYKVFDLKNYT--MLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV-LKSFNHLLHRN 280 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~--~l~tl~~--~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~-L~tl~~~~~~~ 280 (485)
.+.++|.|||||+=|++++. +++++.+ ....+..|+ ..+++++.. .-+-.-+||+.++.- ...+.-|...|
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~---~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD---NVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee---cccceEEEEeecCCccchhhhhhhccc
Confidence 78888999999999999765 5677743 356788898 477777652 235788999987654 66666666788
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCe-----eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-----
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFE-----LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----- 349 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-----~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~----- 349 (485)
..|++.|..+..||++|-|+|+||||++.-. .+.+ ..|...|.++-|||.+-.|+|-+ |.+|+|||..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst-~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST-LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec-ccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 9999998888999999999999999998632 1333 46999999999999988899999 9999999982
Q ss_pred CcEEEEeecCCCCCCC-CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccc
Q 011452 350 GELVTSFEDHLLWHPD-CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSC 428 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~-~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~ 428 (485)
-+.+.++. |...+-. -..--.+|-||-.+|++|-. -.-|-|.|-..||.+..|-+-..
T Consensus 405 ~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~-----------~r~IDv~~~~~~q~v~el~~P~~--------- 463 (498)
T KOG4328|consen 405 DEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRY-----------PRPIDVFDGNGGQMVCELHDPES--------- 463 (498)
T ss_pred CCccceee-ccCcccccccchhheeCCCccEEEEecc-----------CcceeEEcCCCCEEeeeccCccc---------
Confidence 22333332 3221000 01245678999999999987 35699999877777776643220
Q ss_pred CCCCCCCCccccccccccccccchhcccCCeEE-EEEcCCCCEEEEe-cCCCcEEEccC
Q 011452 429 SGDYSSGSCNVKKHSHASRIRSTVAEALEDITA-LFYDEDRNEIYTG-NRHGLVHVWSN 485 (485)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s-l~fspDg~~LaSg-s~DgtVklWd~ 485 (485)
..|.+ ..|+|-+..|++| +.-|.|.||-+
T Consensus 464 ----------------------------~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 464 ----------------------------STIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ----------------------------cccccceeecccccceeccCCccceEEEEec
Confidence 02333 4799999955555 57899999953
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.75 E-value=2.6e-17 Score=172.27 Aligned_cols=253 Identities=15% Similarity=0.180 Sum_probs=187.8
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---E--EEEEcCCc---EEEEE
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---M--LYSISDKN---VQEIK 240 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~--l~tl~~~~---V~~Va 240 (485)
+++|||...-..+.-+.-.+.++. +.++.+...|--++|+.+.|+.|++|. +.|+ . +..+.++. |.++.
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w~~~n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPG--DFSFNWQRRNFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred ceEEeecccccCccccccCCCCCc--ceeeeccccceEEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhhh
Confidence 799999843332211111111221 345667644446778888999999998 4444 1 22222332 45555
Q ss_pred EcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccC-
Q 011452 241 ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE- 319 (485)
Q Consensus 241 fSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh- 319 (485)
+| +.++++..+ ++|||||++.--+.+.+++|+..|..|.+. -.+++|++.+..|-|-|-.+.++....++...
T Consensus 90 ~S---~y~~sgG~~--~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 90 QS---LYEISGGQS--GCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred cc---eeeeccCcC--ceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 55 666665444 899999999877889999999999999997 45789999999999999999999887777544
Q ss_pred CCceEEEEEcCCCcEEEE-Ee-CCcEEEEeCCCc--EEEEeecCCCCCCCCCeeEEEECCCC-CEEEEEecCCCCCCCCc
Q 011452 320 FMTPSAFIFLYENQLFLT-FR-NRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAE 394 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS-~s-D~TIklWd~~G~--ll~tl~gH~~~~~~~~v~svafSpDG-~~LaS~s~d~~~d~~~~ 394 (485)
...|.-+.|+|-.+.|++ ++ ||+|.|||++|. ...-.+.|..+ ...|+|||-+ .+|+|-+.
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP-----~~gicfspsne~l~vsVG~--------- 229 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP-----CRGICFSPSNEALLVSVGY--------- 229 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC-----cCcceecCCccceEEEecc---------
Confidence 345667889999887665 56 999999999865 34556789888 6899999965 56677666
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEe
Q 011452 395 GNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG 474 (485)
Q Consensus 395 ~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg 474 (485)
|+.|.++|+...+...+|.... +.++|+|+|+|-+|+.|
T Consensus 230 --Dkki~~yD~~s~~s~~~l~y~~---------------------------------------Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 230 --DKKINIYDIRSQASTDRLTYSH---------------------------------------PLSTVAFSECGTYLCAG 268 (673)
T ss_pred --cceEEEeecccccccceeeecC---------------------------------------CcceeeecCCceEEEee
Confidence 8999999998777777775532 77899999999999999
Q ss_pred cCCCcEEEccC
Q 011452 475 NRHGLVHVWSN 485 (485)
Q Consensus 475 s~DgtVklWd~ 485 (485)
+..|.|-.+|+
T Consensus 269 ~s~G~~i~YD~ 279 (673)
T KOG4378|consen 269 NSKGELIAYDM 279 (673)
T ss_pred cCCceEEEEec
Confidence 99999988774
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.7e-16 Score=159.36 Aligned_cols=282 Identities=15% Similarity=0.183 Sum_probs=205.9
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
+-+||.-.+ -.++-||+.|..||++-++ +.+-|||.-+-.+ ...|. .|...+-++++| +||+
T Consensus 17 l~~tld~~~---a~~~~Fs~~G~~lAvGc~n----------G~vvI~D~~T~~i---ar~ls-aH~~pi~sl~WS-~dgr 78 (405)
T KOG1273|consen 17 LTHTLDNPL---AECCQFSRWGDYLAVGCAN----------GRVVIYDFDTFRI---ARMLS-AHVRPITSLCWS-RDGR 78 (405)
T ss_pred hceeccCCc---cceEEeccCcceeeeeccC----------CcEEEEEccccch---hhhhh-ccccceeEEEec-CCCC
Confidence 445665433 5789999999999997654 4788999855443 12343 366667789998 7999
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCe--EEEEee-cCCcce
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGT--VLKSFN-HLLHRN 280 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~--~L~tl~-~~~~~~ 280 (485)
.|.++|.|..|++||+..|.+++.+. ...|+.+.|+| ..+.+++--. ..-.+-++.+++ +|-+=. +.+..+
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~---~sp~vi~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIME---ESPVVIDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEec---CCcEEEEecCCceeeccCCCccccccc
Confidence 99999999999999999999999986 67999999998 4444443222 122233333321 111100 111111
Q ss_pred eE-EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC-CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-----C--
Q 011452 281 KK-VDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----G-- 350 (485)
Q Consensus 281 ~~-V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~-~~v~avaFspdg~llaS~s-D~TIklWd~~-----G-- 350 (485)
.+ +.| .+.|+++++|-..|-+-++|..|-+|+..++--. ..|..+.|+-.|+.|+.-+ |++||.++.+ |
T Consensus 156 as~~~f-dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 156 ASHGVF-DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred cccccc-cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 11 224 3668899999999999999999999988876555 6889999999999999988 9999999863 1
Q ss_pred -cE--EEE---eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011452 351 -EL--VTS---FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424 (485)
Q Consensus 351 -~l--l~t---l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~ 424 (485)
+. .+. +-.-..| +.++||.||.|+..++. ..-.+.||.-.+|.+++.|.|..+
T Consensus 235 ~e~e~~~K~qDvVNk~~W------k~ccfs~dgeYv~a~s~----------~aHaLYIWE~~~GsLVKILhG~kg----- 293 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQW------KKCCFSGDGEYVCAGSA----------RAHALYIWEKSIGSLVKILHGTKG----- 293 (405)
T ss_pred CCcChhHHHHHHHhhhhh------hheeecCCccEEEeccc----------cceeEEEEecCCcceeeeecCCch-----
Confidence 21 111 2223345 67999999999998875 478899999999999999988652
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+..-.|.++|-+..|+|- ..|+|.+|.
T Consensus 294 --------------------------------E~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 294 --------------------------------EELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred --------------------------------hheeecccccceeeeeec-cCCceEEEE
Confidence 144457899999999998 789999995
No 158
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2e-15 Score=159.68 Aligned_cols=236 Identities=10% Similarity=0.067 Sum_probs=163.1
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
.+.+||.+ |.....+.. +.+.+.+..|||||+.||.++.... + ..+.+|++..|+.. .+... ..+.
T Consensus 180 ~l~~~d~d-g~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g-~------~~i~i~dl~~G~~~---~l~~~--~~~~ 245 (429)
T PRK03629 180 ELRVSDYD-GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESG-R------SALVIQTLANGAVR---QVASF--PRHN 245 (429)
T ss_pred eEEEEcCC-CCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCC-C------cEEEEEECCCCCeE---EccCC--CCCc
Confidence 68888877 544455554 4567999999999999998874332 2 47888998888652 22221 1334
Q ss_pred eEEEEeCCCCeEEEEe-eCCC--cEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCC-CeeEEEEecCCCeEE
Q 011452 196 GFVEFDDVNGKVLTYS-AQDS--IYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASG-HVPLKILSIEDGTVL 270 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~-s~D~--tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~-D~tIklWdi~tG~~L 270 (485)
..++|+ |||+.|+.. +.++ .|.+||++++++..... ...+.+.+|||++..+++.+... ...|.++|+.+|+.
T Consensus 246 ~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~- 323 (429)
T PRK03629 246 GAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP- 323 (429)
T ss_pred CCeEEC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-
Confidence 478998 799998875 3344 58899999887644333 24678899999776555544322 12344457777755
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEe-C--CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCc---E
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRT---V 343 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s-~--D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~T---I 343 (485)
+.+..+.+....+.|+ |++.+|+..+ . ...|.+||+.+++.......+ ......|+|||+.|+.++ |+. +
T Consensus 324 ~~lt~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 QRITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EEeecCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 3444333445567786 7888888764 3 356889999999865544332 234678999999999988 764 6
Q ss_pred EEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 344 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 344 klWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
.+|+++|+..+.|.+|... +...+|||
T Consensus 401 ~~~~~~G~~~~~l~~~~~~-----~~~p~Wsp 427 (429)
T PRK03629 401 NLVSTDGRFKARLPATDGQ-----VKFPAWSP 427 (429)
T ss_pred EEEECCCCCeEECccCCCC-----cCCcccCC
Confidence 7888899999999888765 67788877
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.72 E-value=3.7e-16 Score=162.48 Aligned_cols=278 Identities=15% Similarity=0.195 Sum_probs=190.2
Q ss_pred ccceEEEEEe----cCEEEEEeCCCeEEeeecccCc----EEEEeecCCcccEEEEEEeeCCCE-EEEEEeecCCCCccc
Q 011452 95 RSKIIEIVAA----RDIVFALAQSGVCAAFCRETNQ----RICFLNVTADEVIRSLFYNKNNDS-LITVSVYASDNFSSL 165 (485)
Q Consensus 95 ~s~V~~i~~s----~~~ias~s~dgtiklW~~~tG~----~l~tl~g~~~~~i~sv~~spdg~~-Las~S~d~~~d~stL 165 (485)
...|.+++|- ..+||+|+..|+|-+||..+.+ .+.-+++ |...|.++-|+|.+.. +.+.| .|
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ssS----yD---- 256 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSSS----YD---- 256 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeeec----cC----
Confidence 4456666666 4899999999999999995322 2333444 8889999999999865 44434 44
Q ss_pred ceeEEEEeEeccCCcCcccceeeec-cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE---EEEEcCCcEEEEEE
Q 011452 166 RCRSTRIEYIRRGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDKNVQEIKI 241 (485)
Q Consensus 166 ~~~t~~lw~i~~G~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~---l~tl~~~~V~~Vaf 241 (485)
+++++-|+..+.... +.... ...|.....|+..++.+|+ +..=|..-+||+.++.- ...+|...|.+|++
T Consensus 257 --GtiR~~D~~~~i~e~---v~s~~~d~~~fs~~d~~~e~~~vl~-~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 257 --GTIRLQDFEGNISEE---VLSLDTDNIWFSSLDFSAESRSVLF-GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred --ceeeeeeecchhhHH---HhhcCccceeeeeccccCCCccEEE-eecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 699999987776532 22220 1122334667654555554 44445899999986552 34456679999999
Q ss_pred cC-CceEEEEEcCCCCeeEEEEecCC--CeE---EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEEC----CCCe
Q 011452 242 SP-GIMLLIFTKASGHVPLKILSIED--GTV---LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV----RNFE 311 (485)
Q Consensus 242 Sp-g~~ll~sss~~~D~tIklWdi~t--G~~---L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv----~tg~ 311 (485)
.| .-.+++++ +.|+|+||||+.. ++. |.++. |...|.++.|+ |.++.|++.+.|.+|||||. ..-+
T Consensus 331 NP~~p~~laT~--s~D~T~kIWD~R~l~~K~sp~lst~~-HrrsV~sAyFS-Ps~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 331 NPVCPWFLATA--SLDQTAKIWDLRQLRGKASPFLSTLP-HRRSVNSAYFS-PSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred CCCCchheeec--ccCcceeeeehhhhcCCCCcceeccc-ccceeeeeEEc-CCCCceEeeccCCceEEeecccccccCC
Confidence 99 44444454 4568999999864 222 44554 67889999998 67788999999999999999 3444
Q ss_pred eEEeccc---CCC--ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 312 LTEVSRT---EFM--TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 312 ~~~~l~g---h~~--~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
.+.++.+ |.- .+...+|-||-.+++.+. -+-|-|.|-+ |+++..|-+-.... .-.-+.|.|=+..||+|+
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~t---I~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESST---IPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccc---cccceeecccccceeccC
Confidence 4444422 222 234457999999999999 8889999998 67787775443321 112367899999888887
Q ss_pred cCCCCCCCCcCCCCeEEEEe
Q 011452 385 KADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 385 ~d~~~d~~~~~~DgtIklWd 404 (485)
. .-|.|.||-
T Consensus 484 ~----------s~Gki~vft 493 (498)
T KOG4328|consen 484 N----------SSGKIYVFT 493 (498)
T ss_pred C----------ccceEEEEe
Confidence 5 257777774
No 160
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1e-16 Score=157.78 Aligned_cols=296 Identities=13% Similarity=0.106 Sum_probs=193.4
Q ss_pred CCCcccccccccccccceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecC
Q 011452 81 PKGHCSMVLPFLRKRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYAS 159 (485)
Q Consensus 81 ~~~~~~~~~~~~~~~s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~ 159 (485)
||....+ +.+ +.+.|.++.|- +++|.+|...|.+++|.++|...++.+.+.+...|..+-.-|++. |.+= |.
T Consensus 3 pPdP~fv-LRp--~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~-l~tq---gR 75 (323)
T KOG0322|consen 3 PPDPFFV-LRP--HSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS-LDTQ---GR 75 (323)
T ss_pred CCCCeeE-ecc--ccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc-hhhc---CC
Confidence 3444444 445 78889999988 999999999999999999999999999877888999999999854 5442 22
Q ss_pred CCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeC-CCCeEEEEeeCCCcEEEeecC-CCeEEEEEc---CC
Q 011452 160 DNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DK 234 (485)
Q Consensus 160 ~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~-pnG~~Las~s~D~tiKlWdl~-~g~~l~tl~---~~ 234 (485)
| -.+-+|+|.-+... .-..-.+++.+|..|+- ++++ ...|-+. .++..+..| ..
T Consensus 76 d-------~~L~lw~ia~s~~i----~i~Si~~nslgFCrfSl~~~~k----------~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 76 D-------PLLILWTIAYSAFI----SIHSIVVNSLGFCRFSLVKKPK----------NSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred C-------ceEEEEEccCcceE----EEeeeeccccccccceeccCCC----------cchhheecCCcccchhhhhccC
Confidence 3 47778887544331 01111233334555531 1111 1111111 011011111 11
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeE--EEEEecCCC--EEEEEeCCCcEEEEECCCC
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK--VDFIEQFNE--KLLVKQENENLQILDVRNF 310 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~--V~f~~~~~~--~lls~s~D~tIkIWDv~tg 310 (485)
.-..|.+-|+..+. +. +.+.. +.+ ..+. .|++|-+++.+-+||+.++
T Consensus 135 ~~tqv~i~dd~~~~----------------Kl-----------gsvmc~~~~~--~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 135 DTTQVQIADDSERS----------------KL-----------GSVMCQDKDH--ACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred ccceeEccCchhcc----------------cc-----------Cceeeeeccc--cccceEEEEEeccCCeEEEEEccCC
Confidence 11112222211110 01 11111 111 1122 3455669999999999998
Q ss_pred ee----------EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC---CcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 311 EL----------TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 311 ~~----------~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~---G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
.. ......|...|.++.|-+--..=++++ +..+-.|+++ |.|-.. .-|...+|. |+.|.|-||
T Consensus 186 ~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~-~e~~lknpG--v~gvrIRpD 262 (323)
T KOG0322|consen 186 DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR-KEITLKNPG--VSGVRIRPD 262 (323)
T ss_pred ceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc-ceEEecCCC--ccceEEccC
Confidence 32 222356888999998877666667888 7788899984 444221 113333333 899999999
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhccc
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEAL 456 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (485)
|+.+|+++. |+-||+++.+|++.|+.|+-|.+
T Consensus 263 ~KIlATAGW-----------D~RiRVyswrtl~pLAVLkyHsa------------------------------------- 294 (323)
T KOG0322|consen 263 GKILATAGW-----------DHRIRVYSWRTLNPLAVLKYHSA------------------------------------- 294 (323)
T ss_pred CcEEeeccc-----------CCcEEEEEeccCCchhhhhhhhc-------------------------------------
Confidence 999999998 79999999999999999999973
Q ss_pred CCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 457 EDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 457 ~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|.+|+|+||...+|.||.|++|-||++
T Consensus 295 -gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 -GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8999999999999999999999999985
No 161
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=7.2e-16 Score=172.03 Aligned_cols=304 Identities=12% Similarity=0.137 Sum_probs=209.5
Q ss_pred CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeec--c
Q 011452 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE--S 191 (485)
Q Consensus 114 dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~--~ 191 (485)
..+|-.||.. ++++ .+.+=+.+-|+|.-..||+ +| ++ -.|.+||.+.|+...+ |..+ .
T Consensus 1049 t~~i~~W~~~------~~~~-n~~~pk~~~~hpf~p~i~~--ad--~r------~~i~vwd~e~~~~l~~---F~n~~~~ 1108 (1387)
T KOG1517|consen 1049 TNPIGNWDQK------FMTG-NNQPPKTLKFHPFEPQIAA--AD--DR------ERIRVWDWEKGRLLNG---FDNGAFP 1108 (1387)
T ss_pred cccccchHHH------HHhc-CCCCCceeeecCCCceeEE--cC--Cc------ceEEEEecccCceecc---ccCCCCC
Confidence 3446677754 3333 3445678899999999987 33 23 4899999998887332 2221 1
Q ss_pred ccCceEEEE-eCCCCeEEEEeeCCCcEEEeecC-C----CeEEEEE---cC----C-cE-EEEEEc-CCceEEEEEcCCC
Q 011452 192 LKWPGFVEF-DDVNGKVLTYSAQDSIYKVFDLK-N----YTMLYSI---SD----K-NV-QEIKIS-PGIMLLIFTKASG 255 (485)
Q Consensus 192 ~~~~~~V~F-s~pnG~~Las~s~D~tiKlWdl~-~----g~~l~tl---~~----~-~V-~~VafS-pg~~ll~sss~~~ 255 (485)
...+..+++ ...|-.+|..|+.||.||||+-. + .+++..+ .+ . .- .=+.+- -.|.|++++.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--- 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--- 1185 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC---
Confidence 122334555 23455678889999999999732 2 2333322 21 1 11 223444 3677777632
Q ss_pred CeeEEEEecCCCeEEEEeecCC-cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---eEEecccCCCc--eEEEEEc
Q 011452 256 HVPLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE---LTEVSRTEFMT--PSAFIFL 329 (485)
Q Consensus 256 D~tIklWdi~tG~~L~tl~~~~-~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---~~~~l~gh~~~--v~avaFs 329 (485)
-..|+|||.+.-++.+.+..-+ .-+.++.-....+..+++|-.||.||++|.+... .+.+.+.|+.. |.-+.|-
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence 3799999999888888776321 1233333332335677778899999999999754 47778899988 8889898
Q ss_pred CCCcE-EEEEe-CCcEEEEeCCC-cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 330 YENQL-FLTFR-NRTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 330 pdg~l-laS~s-D~TIklWd~~G-~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
+.|-- |+|++ ||.|++||+++ ...+.++-...|.++..+..+...++-.+||||+. +.|+||++.
T Consensus 1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~------------q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA------------QLIKIYSLS 1333 (1387)
T ss_pred cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc------------ceEEEEecC
Confidence 86655 99999 99999999986 44444554444544544789999999999999973 899999976
Q ss_pred CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 407 TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 407 TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|+.+..++.+.. |. +-+. ..+.+|+|+|-.-.||.|+.|.+|-|+.
T Consensus 1334 -G~~l~~~k~n~~----F~-----------------~q~~----------gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1334 -GEQLNIIKYNPG----FM-----------------GQRI----------GSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred -hhhhcccccCcc----cc-----------------cCcC----------CCcceeeecchhHhhhhccCCceEEEee
Confidence 999999986642 11 0000 2678999999999999999999999874
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=5.7e-16 Score=154.13 Aligned_cols=267 Identities=15% Similarity=0.110 Sum_probs=188.9
Q ss_pred CCCeEEeee--cccCcEEEEeecCCcccEEEEEEeeCCCEEE-EEEeecCCCCcccce-eEEEEeEeccCCcC-cccc--
Q 011452 113 QSGVCAAFC--RETNQRICFLNVTADEVIRSLFYNKNNDSLI-TVSVYASDNFSSLRC-RSTRIEYIRRGKPD-AGFA-- 185 (485)
Q Consensus 113 ~dgtiklW~--~~tG~~l~tl~g~~~~~i~sv~~spdg~~La-s~S~d~~~d~stL~~-~t~~lw~i~~G~~~-~~~~-- 185 (485)
.|..|.+-. -+.+.+++....+|.+-||.|+-+|..+.|. |+-. +++..++ ..+-||.|+...-. .+.+
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn----~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYN----DTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEe----ccCCCcceeeEEEEecccccCccccchhh
Confidence 344444433 3335555555556788899999999887654 4332 2333322 34668998543221 1111
Q ss_pred ---eeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE-EEEEc-------CCcEEEEEEcC---CceEEEEE
Q 011452 186 ---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-------DKNVQEIKISP---GIMLLIFT 251 (485)
Q Consensus 186 ---lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~-l~tl~-------~~~V~~VafSp---g~~ll~ss 251 (485)
.+.++.++-+..|+|- ||+..||+-. |..|-||+++.+.. ...+. .+...+=++|| +.+++++
T Consensus 114 ~v~~Ldteavg~i~cvew~-Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt- 190 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWE-PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT- 190 (370)
T ss_pred HhhcCCHHHhCceeeEEEc-CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-
Confidence 1222455667789996 7999999876 99999999998775 33332 24567788897 6677665
Q ss_pred cCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCE-EEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEE
Q 011452 252 KASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~-lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaF 328 (485)
.|.|+.-||+.|-++...++ .|.+.+..++|.| .-+. |+++++|+-|||||.+. ...++.+.+|.++||+|.|
T Consensus 191 ---~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 191 ---SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ---CCCcEEEEEccchhhhcchhhhhcceeeeccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 34799999999988888886 6778899999974 4444 44568999999999985 5679999999999999999
Q ss_pred cCC-CcEEEEEe-CCcEEEEeC------------------------------CCcEEEEeecCCCCCCCCCeeEEEECC-
Q 011452 329 LYE-NQLFLTFR-NRTVAVWNF------------------------------RGELVTSFEDHLLWHPDCNTNNIYITS- 375 (485)
Q Consensus 329 spd-g~llaS~s-D~TIklWd~------------------------------~G~ll~tl~gH~~~~~~~~v~svafSp- 375 (485)
.|. .|+++|++ |..|-||.. ...++.+++.|.+. |+.+++|.
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS-----VY~~aWSsa 341 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS-----VYALAWSSA 341 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc-----eEEEeeccC
Confidence 984 67888988 999999962 11235578888877 99999987
Q ss_pred CCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 376 DQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 376 DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|-=+.||-|. ||-+-|-++.
T Consensus 342 dPWiFASLSY-----------DGRviIs~V~ 361 (370)
T KOG1007|consen 342 DPWIFASLSY-----------DGRVIISSVP 361 (370)
T ss_pred CCeeEEEecc-----------CceEEeecCC
Confidence 4445566665 7888777654
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.71 E-value=2.5e-16 Score=160.76 Aligned_cols=185 Identities=15% Similarity=0.217 Sum_probs=148.6
Q ss_pred CCeEEEEeeCCCcEEEeecCC----------------CeEEEEEcCC--cEEEEEEcC--CceEEEEEcCCCCeeEEEEe
Q 011452 204 NGKVLTYSAQDSIYKVFDLKN----------------YTMLYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~----------------g~~l~tl~~~--~V~~VafSp--g~~ll~sss~~~D~tIklWd 263 (485)
+..+.|+=|.-|.|+|||+.. .+.+|++.++ .=..+.||| .|.|++. |--..|.+|-
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG---Dc~~~I~lw~ 240 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG---DCVKGIHLWE 240 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC---ccccceEeee
Confidence 667788888899999999742 1236666544 457899998 6667643 3337899999
Q ss_pred cCCCeEE---EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC---eeEEecccCCCceEEEEEcCCCcEEEE
Q 011452 264 IEDGTVL---KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 264 i~tG~~L---~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg---~~~~~l~gh~~~v~avaFspdg~llaS 337 (485)
..+|.-. ..|.+|...|..++++|-..+-++++|-|++|||||++++ -|+.+ ..|...|+.+.|+.+-.+|||
T Consensus 241 ~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 241 PSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred eccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeee
Confidence 9988754 4688899999999998766677788899999999999998 56666 789999999999998889999
Q ss_pred Ee-CCcEEEEeCC----CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 338 FR-NRTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 338 ~s-D~TIklWd~~----G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
|+ |||++|||++ |+.+.+|+-|... |.+|.|+|.-.-.+.++ |.|..|-|||+..
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p-----ItsieW~p~e~s~iaas----------g~D~QitiWDlsv 379 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAP-----ITSIEWHPHEDSVIAAS----------GEDNQITIWDLSV 379 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCC-----eeEEEeccccCceEEec----------cCCCcEEEEEeec
Confidence 99 9999999983 7899999999988 99999999544333332 1379999999864
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-15 Score=160.21 Aligned_cols=276 Identities=11% Similarity=0.090 Sum_probs=196.5
Q ss_pred EEEEeCCCeEEeeecccCcEE-EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccce
Q 011452 108 VFALAQSGVCAAFCRETNQRI-CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l-~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~l 186 (485)
|-.+|...++||||...-... |.+.....-.+.++-|+..+. |+++|. +.| ..++||. +.|++ ...++
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~--~gd------k~~~~~~-K~g~~-~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASM--AGD------KVMRIKE-KDGKT-PEVPR 73 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeec--CCc------eeEEEec-ccCCC-Cccce
Confidence 344555668999996532211 222222333599999999886 777774 334 5889998 78883 33444
Q ss_pred eeeccccCceE---EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEEcCCCCeeEE
Q 011452 187 FESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLK 260 (485)
Q Consensus 187 f~~~~~~~~~~---V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~sss~~~D~tIk 260 (485)
.+.....-..+ ..|+ .++.+|++.++||||||+...+...+.+ ..|..|.+.- |-.+| +.+.+ +-|-
T Consensus 74 ~~k~~gd~~~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiA-svs~g--Gdii 146 (673)
T KOG4378|consen 74 VRKLTGDNAFCVACASQS----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIA-SVSDG--GDII 146 (673)
T ss_pred eeccccchHHHHhhhhcc----eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeE-EeccC--CcEE
Confidence 44311111122 3454 7999999999999999995445566655 4799999994 65555 44554 6788
Q ss_pred EEecCCCeEEEEeecCC-cceeEEEEEecCCCEEEE-EeCCCcEEEEECCCCee-EEecccCCCceEEEEEcCCCc-EEE
Q 011452 261 ILSIEDGTVLKSFNHLL-HRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFEL-TEVSRTEFMTPSAFIFLYENQ-LFL 336 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~-~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg~~-~~~l~gh~~~v~avaFspdg~-lla 336 (485)
|-.+.|+..-.+|.+.. ..++-+.|+ ++-..||+ .++||+|.|||++.... ......|......|+|+|-+. +|+
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys-~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYS-PSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecc-cccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 99999999888998543 344577887 45555555 58999999999997655 445678999999999999665 556
Q ss_pred EEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEE
Q 011452 337 TFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAK 413 (485)
Q Consensus 337 S~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~t 413 (485)
|-+ |..|-++|.. .+...+|.-.. + ..+|+|+|+|.+|+.|+. .|.|--+|+.. ...+++
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y~~-P-----lstvaf~~~G~~L~aG~s-----------~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTYSH-P-----LSTVAFSECGTYLCAGNS-----------KGELIAYDMRSTKAPVAV 288 (673)
T ss_pred EecccceEEEeecccccccceeeecC-C-----cceeeecCCceEEEeecC-----------CceEEEEecccCCCCceE
Confidence 667 9999999996 55555555322 1 578999999999999875 69999999964 567999
Q ss_pred ecCCCC
Q 011452 414 IRASNG 419 (485)
Q Consensus 414 l~gH~~ 419 (485)
+.+|..
T Consensus 289 ~sah~~ 294 (673)
T KOG4378|consen 289 RSAHDA 294 (673)
T ss_pred eeeccc
Confidence 999973
No 165
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.2e-14 Score=153.55 Aligned_cols=274 Identities=9% Similarity=0.070 Sum_probs=171.2
Q ss_pred eEEeeecccCcEEEEe--ecCCcccEEEEEE--------------eeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC
Q 011452 116 VCAAFCRETNQRICFL--NVTADEVIRSLFY--------------NKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 116 tiklW~~~tG~~l~tl--~g~~~~~i~sv~~--------------spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~ 179 (485)
.++|||..+|+.|... .+ +.+..|.++. -..+..||.++..+..+ -...++.+||. .|.
T Consensus 120 ~~~l~d~~~~~~~~~~~~~~-~~~~~r~~ah~~~d~i~~~~tg~~g~f~~~ia~v~~~~~~~---~~~~~l~i~D~-~g~ 194 (433)
T PRK04922 120 EYELFDVFKGERLLGLRLTA-PASAMRQAAHQIADAIYEKITGVPGAFWTRIAYVTVSGAGG---AMRYALQVADS-DGY 194 (433)
T ss_pred EEEEEECCCCCEeeceEEEe-CHHHHHHHHHHHHHHHHHHHcCCCCcccceEEEEEEeCCCC---CceEEEEEECC-CCC
Confidence 5899999888876532 22 2221222210 01122455554422211 23357888886 443
Q ss_pred cCcccceeeeccccCceEEEEeCCCCeEEEEeeCC---CcEEEeecCCCeEEEEE-cCCcEEEEEEcCCce-EEEEEcCC
Q 011452 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSI-SDKNVQEIKISPGIM-LLIFTKAS 254 (485)
Q Consensus 180 ~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D---~tiKlWdl~~g~~l~tl-~~~~V~~VafSpg~~-ll~sss~~ 254 (485)
.. ..+... -..+.+.+|+ |||+.|++.+.+ ..|.+||+.+|+..... ....+.+++|||++. ++.+.+.+
T Consensus 195 ~~--~~lt~~--~~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 195 NP--QTILRS--AEPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred Cc--eEeecC--CCccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC
Confidence 21 123322 2234578898 799999998743 47999999988753221 123455789998664 55554444
Q ss_pred CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCc--EEEEECCCCeeEEecccCCCceEEEEEcCC
Q 011452 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNFELTEVSRTEFMTPSAFIFLYE 331 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~t--IkIWDv~tg~~~~~l~gh~~~v~avaFspd 331 (485)
+...|.+||+.+|++. .+..+......++|+ |++.+|+..+ .++. |-++|+.+++..+.. .+.......+||||
T Consensus 270 g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpD 346 (433)
T PRK04922 270 GNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPD 346 (433)
T ss_pred CCceEEEEECCCCCeE-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCC
Confidence 4567999999998754 455554455678896 7888888876 4555 555577777754433 22233456899999
Q ss_pred CcEEEEEe-CC---cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 332 NQLFLTFR-NR---TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 332 g~llaS~s-D~---TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|+.|+..+ ++ .|.+||+. |++. .|... .+ ..+..|+|||++|+..+.. +....|.++++.
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~~-----~~~p~~spdG~~i~~~s~~--------~g~~~L~~~~~~ 411 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-SL-----DESPSFAPNGSMVLYATRE--------GGRGVLAAVSTD 411 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-CC-----CCCceECCCCCEEEEEEec--------CCceEEEEEECC
Confidence 99998765 32 69999997 5544 55422 23 4567999999999887751 223568888874
Q ss_pred CCeEEEEecCCC
Q 011452 407 TGKCLAKIRASN 418 (485)
Q Consensus 407 TGk~l~tl~gH~ 418 (485)
|.....+..+.
T Consensus 412 -g~~~~~l~~~~ 422 (433)
T PRK04922 412 -GRVRQRLVSAD 422 (433)
T ss_pred -CCceEEcccCC
Confidence 66677776554
No 166
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2e-14 Score=151.87 Aligned_cols=183 Identities=13% Similarity=0.131 Sum_probs=123.2
Q ss_pred CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEc-CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 214 DSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTK-ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss-~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
..+|.+||...+. ...+. ...|.+.+|||++..+++.+ .+.+..|.+||+.+|+... +..+.+.+..++|+ |++
T Consensus 183 ~~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~S-pDG 259 (433)
T PRK04922 183 RYALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFS-PDG 259 (433)
T ss_pred eEEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceEC-CCC
Confidence 3578999986443 33343 45799999999776555544 3334679999999987643 33333445578886 788
Q ss_pred CEEEEE-eCCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCc--EEEEeCC-CcEEEEeecCCCC
Q 011452 291 EKLLVK-QENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNFR-GELVTSFEDHLLW 362 (485)
Q Consensus 291 ~~lls~-s~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~T--IklWd~~-G~ll~tl~gH~~~ 362 (485)
.+|+.. +.++ .|.+||+.++++.+ +..|......++|+|||+.|+..+ ++. |-++|+. |+. +.+..+...
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~ 337 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNY 337 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 888764 4444 69999999998755 445555556789999999888776 455 5555665 543 333322222
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
...++|||||++|+-.+.+ +....|.+||+.+|+.. .|.
T Consensus 338 -----~~~~~~SpDG~~Ia~~~~~--------~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 338 -----NARASVSPDGKKIAMVHGS--------GGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred -----ccCEEECCCCCEEEEEECC--------CCceeEEEEECCCCCeE-ECC
Confidence 3468999999999987641 12347999999988764 443
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.7e-16 Score=166.63 Aligned_cols=201 Identities=17% Similarity=0.189 Sum_probs=155.2
Q ss_pred CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC--------CCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEE
Q 011452 233 DKNVQEIKISPGIMLLIFTKASGHVPLKILSIE--------DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 304 (485)
Q Consensus 233 ~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~--------tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkI 304 (485)
.+-|+..+|.|-.--+++++ .|++||||+++ .-+.+.+|.+|.+.|-+|+.. ..++.+.+++.|++||.
T Consensus 294 ~d~ir~l~~~~sep~lit~s--ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITAS--EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRC 370 (577)
T ss_pred hhhhhhhhcCCCCCeEEEec--cccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceeee
Confidence 35788899997333344443 45899999993 234678999999999999984 56889999999999999
Q ss_pred EECC------CC----eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeec---------------
Q 011452 305 LDVR------NF----ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED--------------- 358 (485)
Q Consensus 305 WDv~------tg----~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~g--------------- 358 (485)
|++- .. -+..++.||++.||.+++|+..+.|++++ |||+++|+..++...+|..
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence 9543 11 35667889999999999999999999999 9999999975332211110
Q ss_pred ---CC---------------------------CC--CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 359 ---HL---------------------------LW--HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 359 ---H~---------------------------~~--~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|. .. ...+.++-|.-.|.+.+.+++-. |++|++.|..
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-----------d~~Ir~~dn~ 519 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-----------DRSIRFFDNK 519 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-----------CCceeccccc
Confidence 10 00 00123566667777777777654 7999999999
Q ss_pred CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 407 TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 407 TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+|+.++...+|-+ .|+++++.|+|-+|+||+.|+.|++|.+
T Consensus 520 ~~~~l~s~~a~~~--------------------------------------svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 520 TGKILHSMVAHKD--------------------------------------SVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccchheeeccc--------------------------------------eecceeecCCCceEEeecCCceeehhhc
Confidence 9999999988863 8999999999999999999999999975
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=1.1e-15 Score=158.42 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=138.7
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCeEE-E
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVL-K 271 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~~L-~ 271 (485)
++++.-..-.+|||||.|.||||||+.+|++..++. +..|++++|.| ...||++ +.|++|+|-|...-.+. +
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG---s~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSG---SYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEec---cccceEEeeeccCccccCc
Confidence 455543345789999999999999999999998885 67999999997 5555543 56799999998731111 1
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeC
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF 348 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~ 348 (485)
..+ ..+.+..|++.+.....++++.+||+|+=.|+|+ |+++.++..|...|+.+.+++.-. +++|++ |++||||++
T Consensus 325 ~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 325 EWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred eEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 111 1256778888754455677778999999999997 499999999999999999887554 577778 999999999
Q ss_pred CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 349 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 349 ~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
.+.--..-..|..- .+...+.++-|+=-.+...+ |..+-++|||+.+..-
T Consensus 404 ~~~~~~~v~~~~~~--~~rl~c~~~~~~~a~~la~G----------G~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFK--LGRLHCFALDPDVAFTLAFG----------GEKAVLRVWDIFTNSP 453 (463)
T ss_pred cCCCCccccccccc--ccceeecccCCCcceEEEec----------CccceEEEeecccChh
Confidence 53321112223221 11133445555544433332 2357899999876543
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=6.7e-16 Score=164.56 Aligned_cols=236 Identities=13% Similarity=0.162 Sum_probs=185.0
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc---eEEEEEcCC------------
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI---MLLIFTKAS------------ 254 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~---~ll~sss~~------------ 254 (485)
|.+-+.+++-+ |.|..||||+.|||||||.+.||.|++++. +..|++|+|+|+. .||++....
T Consensus 399 Htg~Vr~iSvd-p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~ 477 (733)
T KOG0650|consen 399 HTGLVRSISVD-PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRL 477 (733)
T ss_pred cCCeEEEEEec-CCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchh
Confidence 55556678886 689999999999999999999999999997 6799999999833 233332111
Q ss_pred -----------------CCeeEEEEecCC---Ce--EEEEeecCCcceeEEEEEecCCCEEEEE---eCCCcEEEEECCC
Q 011452 255 -----------------GHVPLKILSIED---GT--VLKSFNHLLHRNKKVDFIEQFNEKLLVK---QENENLQILDVRN 309 (485)
Q Consensus 255 -----------------~D~tIklWdi~t---G~--~L~tl~~~~~~~~~V~f~~~~~~~lls~---s~D~tIkIWDv~t 309 (485)
.|.++-.|.-.. ++ +-.++ -|-..+..|.|. -.|++|++. +....|-|.++..
T Consensus 478 e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-~~~k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 478 EVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-KHPKSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE-ecCCccceeeee-cCCceEEEeccCCCcceEEEEeccc
Confidence 011223454321 11 00112 234567788887 568899885 3667889999998
Q ss_pred CeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCC
Q 011452 310 FELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (485)
Q Consensus 310 g~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~ 388 (485)
+..+..++--.+.|-++.|.|-.-+|+.++-+.|+|+|+- ++++..|.--.-| |.+++++|.|+-|+.++.
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw-----iS~msihp~GDnli~gs~--- 627 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW-----ISSMSIHPNGDNLILGSY--- 627 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee-----eeeeeecCCCCeEEEecC---
Confidence 8777777666678999999999999999999999999994 9998888777778 999999999999999987
Q ss_pred CCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCC
Q 011452 389 DDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDED 467 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD 467 (485)
|+.+-.+|+.- -+..++++-|.. .|++|+|++-
T Consensus 628 --------d~k~~WfDldlsskPyk~lr~H~~--------------------------------------avr~Va~H~r 661 (733)
T KOG0650|consen 628 --------DKKMCWFDLDLSSKPYKTLRLHEK--------------------------------------AVRSVAFHKR 661 (733)
T ss_pred --------CCeeEEEEcccCcchhHHhhhhhh--------------------------------------hhhhhhhccc
Confidence 79998889864 367788888873 8999999999
Q ss_pred CCEEEEecCCCcEEEc
Q 011452 468 RNEIYTGNRHGLVHVW 483 (485)
Q Consensus 468 g~~LaSgs~DgtVklW 483 (485)
=..++|||.||+|.|.
T Consensus 662 yPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 662 YPLFASGSDDGTVIVF 677 (733)
T ss_pred cceeeeecCCCcEEEE
Confidence 9999999999999885
No 170
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=1.4e-15 Score=163.08 Aligned_cols=239 Identities=13% Similarity=0.160 Sum_probs=167.7
Q ss_pred EEEEeCC--CCeEEEEeeCCCcEEEeecCCCeEE------EEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC
Q 011452 197 FVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTML------YSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 197 ~V~Fs~p--nG~~Las~s~D~tiKlWdl~~g~~l------~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t 266 (485)
.+.|++. .-.+||-+-.||-|.|+|.+.-... +-. |.+.|.++++-|+.++++++++ |.|+|+||+++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG--DsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG--DSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC--Cceeeeeeecc
Confidence 4667532 3467899999999999997643321 222 4568999999999999998764 58999999999
Q ss_pred CeEEEE--eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-------eEE--------------------ecc
Q 011452 267 GTVLKS--FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-------LTE--------------------VSR 317 (485)
Q Consensus 267 G~~L~t--l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-------~~~--------------------~l~ 317 (485)
+++... +-||+..+.+++|.+.+..-+++|+.|+.|.|||++-.. +.+ ...
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 999877 889999999999985545556667899999999987322 111 112
Q ss_pred cCCCceEE---EEEcCCCcEEEEEe--CCcEEEEeCC-CcEEEE------eecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 318 TEFMTPSA---FIFLYENQLFLTFR--NRTVAVWNFR-GELVTS------FEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 318 gh~~~v~a---vaFspdg~llaS~s--D~TIklWd~~-G~ll~t------l~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.|...+.+ +.|.-|..+|||++ |++||+||++ ..+... ..-|.....--.+.++....-|.+|...|.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt 291 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT 291 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence 34455666 66777888888888 9999999985 333322 111211000111556777777888888887
Q ss_pred CCCCCCCCcCCCCeEEEEeCCCC--eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE
Q 011452 386 ADSDDPLAEGNAGSINISNILTG--KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF 463 (485)
Q Consensus 386 d~~~d~~~~~~DgtIklWdl~TG--k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~ 463 (485)
|++|.+||+.+- ..++.+.+|.+ .. -.|- -.
T Consensus 292 -----------D~sIy~ynm~s~s~sP~~~~sg~~~-------------------------~s----------f~vk-s~ 324 (720)
T KOG0321|consen 292 -----------DNSIYFYNMRSLSISPVAEFSGKLN-------------------------SS----------FYVK-SE 324 (720)
T ss_pred -----------CCcEEEEeccccCcCchhhccCccc-------------------------ce----------eeee-ee
Confidence 799999998642 23344444431 11 0222 35
Q ss_pred EcCCCCEEEEecCCCcEEEcc
Q 011452 464 YDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 464 fspDg~~LaSgs~DgtVklWd 484 (485)
.|||++.|+||+.|+.+.+|.
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred cCCCCceEeccCCCcceeeee
Confidence 799999999999999999996
No 171
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.5e-14 Score=151.47 Aligned_cols=207 Identities=16% Similarity=0.188 Sum_probs=143.2
Q ss_pred CcEEEeecCCCeEEE-EEcCCcEEEEEEcCCceEEEEEc-CCCCeeEEEEecCCCeEE--EEeecCCcceeEEEEEecCC
Q 011452 215 SIYKVFDLKNYTMLY-SISDKNVQEIKISPGIMLLIFTK-ASGHVPLKILSIEDGTVL--KSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~-tl~~~~V~~VafSpg~~ll~sss-~~~D~tIklWdi~tG~~L--~tl~~~~~~~~~V~f~~~~~ 290 (485)
..+.|||.+.+.... +-....+.+.+|||++..+++.+ .+.+..|.+||+.+|+.. ..+. +.+..++|+ ||+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~~S-PDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFS-PDG 254 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeEEC-CCC
Confidence 478888887655322 22345799999999776555433 334468999999999643 3344 345578886 788
Q ss_pred CEEEEE-eCCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEE--eCCCcEEEEeecCCCCC
Q 011452 291 EKLLVK-QENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWH 363 (485)
Q Consensus 291 ~~lls~-s~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklW--d~~G~ll~tl~gH~~~~ 363 (485)
.+|+.. +.++ .|.+||++++++.+...++ ..+....|+|||+.|+..+ ++..+|| |+.+.....+..+...
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~- 332 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ- 332 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC-
Confidence 888875 4444 5888999999887665443 4677889999999888776 4566777 5554444455443322
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccc
Q 011452 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHS 443 (485)
Q Consensus 364 ~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (485)
.....|||||++|+..+.+ +....|.+||+.+|+. ..|....
T Consensus 333 ----~~~~~~SpDG~~Ia~~~~~--------~g~~~I~~~dl~~g~~-~~Lt~~~------------------------- 374 (429)
T PRK03629 333 ----NQDADVSSDGKFMVMVSSN--------GGQQHIAKQDLATGGV-QVLTDTF------------------------- 374 (429)
T ss_pred ----ccCEEECCCCCEEEEEEcc--------CCCceEEEEECCCCCe-EEeCCCC-------------------------
Confidence 4578999999999987651 1235699999998874 3444321
Q ss_pred cccccccchhcccCCeEEEEEcCCCCEEEEecCCCc
Q 011452 444 HASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGL 479 (485)
Q Consensus 444 ~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dgt 479 (485)
...+..|||||+.|+.++.|+.
T Consensus 375 --------------~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 375 --------------LDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred --------------CCCCceECCCCCEEEEEEcCCC
Confidence 1234689999999999998875
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=3.3e-16 Score=157.78 Aligned_cols=317 Identities=15% Similarity=0.143 Sum_probs=212.6
Q ss_pred ccchhhhhhhcccccccCcccccchhHHHhhhcccc--ccccccCCCCccc---ccccccccccceEEEEEe------cC
Q 011452 38 FVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQ--EEYDTHDPKGHCS---MVLPFLRKRSKIIEIVAA------RD 106 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~---~~~~~~~~~s~V~~i~~s------~~ 106 (485)
..|.++.=+...|.+-..-.|.....|.+|-+-|=. ..|+++-.-..+. ..-+. +..+-..++.+ +-
T Consensus 29 ~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d--~~Esfytcsw~yd~~~~~p 106 (385)
T KOG1034|consen 29 YTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADED--HDESFYTCSWSYDSNTGNP 106 (385)
T ss_pred eeeehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCC--CCcceEEEEEEecCCCCCe
Confidence 455555555555655555555556666666655433 3333333222111 11122 34445555555 44
Q ss_pred EEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc
Q 011452 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (485)
Q Consensus 107 ~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~ 185 (485)
++|+++.-|.||+.|..++++...+.+ |...|+.|-|.|+. |+|+++| .| +++|||+|+++.+ ..
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~qlvls~S----kD------~svRlwnI~~~~C---v~ 172 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQLVLSAS----KD------HSVRLWNIQTDVC---VA 172 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCcEEEEec----CC------ceEEEEeccCCeE---EE
Confidence 799999999999999999999999988 88899999999997 5667766 45 7999999999998 34
Q ss_pred eeee--ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEe
Q 011452 186 LFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 186 lf~~--~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWd 263 (485)
+|.. +|..++.+|.|+ ++|..|+|++.|.++|+|++...+.-..+. .++.|+|+.... +
T Consensus 173 VfGG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE----~s~~~~~~~t~~---------p----- 233 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLE----LSITYSPNKTTR---------P----- 233 (385)
T ss_pred EecccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhh----hhcccCCCCccC---------c-----
Confidence 7775 577778899998 799999999999999999998543221111 124566543311 0
Q ss_pred cCCCeEE-EEe---ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEEC-CCC---------eeEEecccCCC----ceE-
Q 011452 264 IEDGTVL-KSF---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV-RNF---------ELTEVSRTEFM----TPS- 324 (485)
Q Consensus 264 i~tG~~L-~tl---~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv-~tg---------~~~~~l~gh~~----~v~- 324 (485)
+.+-++. -.| .-|...|..|.| +++.++++|-++.|-.|-. +=+ +.-.+.-++.. .+|
T Consensus 234 fpt~~~~fp~fst~diHrnyVDCvrw---~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf 310 (385)
T KOG1034|consen 234 FPTPKTHFPDFSTTDIHRNYVDCVRW---FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF 310 (385)
T ss_pred CCccccccccccccccccchHHHHHH---HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence 0111111 111 234455667776 3789999998899999987 211 22222223332 233
Q ss_pred -EEEEcCCCcEEEEEe-CCcEEEEeCC-Cc--EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 325 -AFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 325 -avaFspdg~llaS~s-D~TIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
-++|.|-++.||-+. -|+|-+||++ -+ ...|+.-+.. ...|+..+||.||.+|+-.|. |++
T Consensus 311 irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~---~~tVRQ~sfS~dgs~lv~vcd-----------d~~ 376 (385)
T KOG1034|consen 311 IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS---GSTVRQTSFSRDGSILVLVCD-----------DGT 376 (385)
T ss_pred EEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc---cceeeeeeecccCcEEEEEeC-----------CCc
Confidence 456788899999999 9999999996 33 3445554432 245899999999999999996 799
Q ss_pred EEEEeCC
Q 011452 400 INISNIL 406 (485)
Q Consensus 400 IklWdl~ 406 (485)
|-=||..
T Consensus 377 Vwrwdrv 383 (385)
T KOG1034|consen 377 VWRWDRV 383 (385)
T ss_pred EEEEEee
Confidence 9999853
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=7e-16 Score=158.31 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=112.8
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-------eeEEecccCCCceEEEEEcCCC-cEEEEEe-CCc
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-------ELTEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRT 342 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-------~~~~~l~gh~~~v~avaFspdg-~llaS~s-D~T 342 (485)
.+.||.+.+-.++|.|..+.-|+++|+|.||+||++-.+ +.+..|.||+..|--|++.|-- +.|+|++ |.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 456999999999998555556666799999999998644 3467789999999999998853 4566776 999
Q ss_pred EEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 343 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
|+|||+. |+-+-+|. |.+- |+++.|+.||.+|++.|+ |..|||||..+|+.+..-.+|.+
T Consensus 156 v~iWnv~tgeali~l~-hpd~-----i~S~sfn~dGs~l~Ttck-----------DKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDM-----VYSMSFNRDGSLLCTTCK-----------DKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred EEEEeccCCceeeecC-CCCe-----EEEEEeccCCceeeeecc-----------cceeEEEcCCCCcEeeecccccC
Confidence 9999995 99888887 7766 999999999999999998 79999999999999999999985
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.64 E-value=5.1e-14 Score=145.05 Aligned_cols=277 Identities=15% Similarity=0.179 Sum_probs=191.3
Q ss_pred cccEEEEEEeeCCC-EEEEEEeecCCCCcccceeEEEEeEeccCCcCcc--cceeee---ccccCceEEEEeCCCCeEEE
Q 011452 136 DEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG--FALFES---ESLKWPGFVEFDDVNGKVLT 209 (485)
Q Consensus 136 ~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~--~~lf~~---~~~~~~~~V~Fs~pnG~~La 209 (485)
.+.|.++.|.++.. .|||++. | ..++||.+.+++...+ ...|.. .|...+..|.|+ |+|.+||
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~----D------~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLA 81 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGG----D------KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLA 81 (434)
T ss_pred CCceEEEEeccCcccceecccC----c------cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc-CCcCeee
Confidence 35799999999988 8888663 3 5899999988887553 222322 244556678998 8999999
Q ss_pred EeeCCCcEEEeecC--------C--------CeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 210 YSAQDSIYKVFDLK--------N--------YTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 210 s~s~D~tiKlWdl~--------~--------g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
||+++++|-+|-.. + ..-...+ |...|.+++++|+++.+++++ .|+++++||+..|++++
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s--~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS--VDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee--ccceEEEEEeccceeEe
Confidence 99999999999876 2 1112233 346899999999999988865 45899999999999999
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc--------c-----------CCC----ceEEEEE
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR--------T-----------EFM----TPSAFIF 328 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~--------g-----------h~~----~v~avaF 328 (485)
.+.+|.|.+..|++- |.++++++.+.|...+..++.....++... + |.. .-....|
T Consensus 160 ~~~dh~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eccccccccceeecc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 999999999999995 678888888888877666655433221110 0 111 2234578
Q ss_pred cCCCcEEEEEe-----CCcEEEEeCCCcEEEEeecCCCCCC-------CCCeeEEEECC------------------CCC
Q 011452 329 LYENQLFLTFR-----NRTVAVWNFRGELVTSFEDHLLWHP-------DCNTNNIYITS------------------DQD 378 (485)
Q Consensus 329 spdg~llaS~s-----D~TIklWd~~G~ll~tl~gH~~~~~-------~~~v~svafSp------------------DG~ 378 (485)
+|||.+|++.+ .+.+.. ...+.|.++.+.-| ...+..+.|+| =+-
T Consensus 239 TPdG~llvtPag~~~~g~~~~~-----n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFR-----NTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred CCCCcEEEcccceeeeCCceee-----ceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence 99999999753 444431 11222333322111 11234455554 234
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccC
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALE 457 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (485)
..|-++. +.|.|+|.++-+.+..... |- .
T Consensus 314 vfaiAt~------------~svyvydtq~~~P~~~v~nihy--------------------------------------~ 343 (434)
T KOG1009|consen 314 VFAIATK------------NSVYVYDTQTLEPLAVVDNIHY--------------------------------------S 343 (434)
T ss_pred EEEEeec------------ceEEEeccccccceEEEeeeee--------------------------------------e
Confidence 4556664 7899999776555544432 32 2
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEE
Q 011452 458 DITALFYDEDRNEIYTGNRHGLVH 481 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~DgtVk 481 (485)
.|+.++|++||..|+-.|.||..-
T Consensus 344 ~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 344 AITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred eecceeecCCCcEEEEeccCCceE
Confidence 899999999999999999999643
No 175
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.7e-14 Score=142.65 Aligned_cols=275 Identities=13% Similarity=0.129 Sum_probs=189.5
Q ss_pred CcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCC
Q 011452 83 GHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNF 162 (485)
Q Consensus 83 ~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~ 162 (485)
+.||-|+|. |++||.|+.||.+-+||..|-..-+.|.+ |--+|.||+||+||..|.|+|+ |
T Consensus 26 a~~~~Fs~~-------------G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr~LltsS~----D- 86 (405)
T KOG1273|consen 26 AECCQFSRW-------------GDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGRKLLTSSR----D- 86 (405)
T ss_pred cceEEeccC-------------cceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCCEeeeecC----C-
Confidence 556666666 99999999999999999998665555554 8889999999999999999885 3
Q ss_pred cccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-c---C---Cc
Q 011452 163 SSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S---D---KN 235 (485)
Q Consensus 163 stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~---~---~~ 235 (485)
+.+++||+..|.++..+. |. ..++++.|.|.+-...+..-.+..--|=++.+++ +++ + + +.
T Consensus 87 -----~si~lwDl~~gs~l~rir-f~----spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~ 154 (405)
T KOG1273|consen 87 -----WSIKLWDLLKGSPLKRIR-FD----SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNS 154 (405)
T ss_pred -----ceeEEEeccCCCceeEEE-cc----CccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCcccccc
Confidence 699999999998843211 22 2345677764333332222233333344443322 111 1 1 11
Q ss_pred E-EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC-cceeEEEEEecCCCEEEEEeCCCcEEEEECCC----
Q 011452 236 V-QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRN---- 309 (485)
Q Consensus 236 V-~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~-~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t---- 309 (485)
+ ....|.+-|.+++++... +-+-+.|.+|-+|+.+|+--. ..++.+-|+ .-+..|++-..|.+||.++++.
T Consensus 155 sas~~~fdr~g~yIitGtsK--Gkllv~~a~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSK--GKLLVYDAETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred ccccccccCCCCEEEEecCc--ceEEEEecchheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhccc
Confidence 1 123567644444443322 789999999999999998544 567788885 6688899999999999999872
Q ss_pred CeeEEecccC-------CCceEEEEEcCCCcEEEEEe--CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCE
Q 011452 310 FELTEVSRTE-------FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (485)
Q Consensus 310 g~~~~~l~gh-------~~~v~avaFspdg~llaS~s--D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~ 379 (485)
|+-.++-.-| .-+=..+.||.||.++..++ -..+-||... |.|++.|.|-.+.. ...|.+.|=--.
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~----l~DV~whp~rp~ 307 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEE----LLDVNWHPVRPI 307 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhh----eeecccccceee
Confidence 1111111011 11224678999999998887 7799999997 99999999877421 456777777778
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
|+|-. .|+|.||...+
T Consensus 308 i~si~------------sg~v~iw~~~~ 323 (405)
T KOG1273|consen 308 IASIA------------SGVVYIWAVVQ 323 (405)
T ss_pred eeecc------------CCceEEEEeec
Confidence 88874 49999998754
No 176
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.6e-13 Score=145.00 Aligned_cols=207 Identities=12% Similarity=0.032 Sum_probs=141.7
Q ss_pred CCcEEEeecCCCeEE-EEEcCCcEEEEEEcCCceEEEEEc-CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC
Q 011452 214 DSIYKVFDLKNYTML-YSISDKNVQEIKISPGIMLLIFTK-ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 214 D~tiKlWdl~~g~~l-~tl~~~~V~~VafSpg~~ll~sss-~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
...|.+||..++... .+-+...|.+.+|||++..+++.+ ..++..|.+||+++|+.. .+..+.+.+...+|+ |++.
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG~ 258 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFS-PDGR 258 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEEC-CCCC
Confidence 347888887655432 222356899999999766555543 334578999999998763 444444566788886 7888
Q ss_pred EEEEE-eCCCc--EEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--cEEEEeCCCcEEEEeecCCCCCC
Q 011452 292 KLLVK-QENEN--LQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWHP 364 (485)
Q Consensus 292 ~lls~-s~D~t--IkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--TIklWd~~G~ll~tl~gH~~~~~ 364 (485)
+|+.. +.|+. |.+||+.++++.+ +..|........|+|||+.|+..+ ++ .|.+||++|..++.+..+...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~-- 335 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR-- 335 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc--
Confidence 88765 56665 6666999888755 445665677789999999888766 33 577888876555556544333
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
+....|||||++|+..+.+ +.+..|.+||+.++ ....+.. ..
T Consensus 336 ---~~~~~~SpdG~~ia~~~~~--------~~~~~i~~~d~~~~-~~~~lt~-~~------------------------- 377 (435)
T PRK05137 336 ---YSTPVWSPRGDLIAFTKQG--------GGQFSIGVMKPDGS-GERILTS-GF------------------------- 377 (435)
T ss_pred ---ccCeEECCCCCEEEEEEcC--------CCceEEEEEECCCC-ceEeccC-CC-------------------------
Confidence 5678899999999987641 12357889997654 3444432 10
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
.+.++.|+|||+.|+-.+.
T Consensus 378 -------------~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 378 -------------LVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred -------------CCCCCeECCCCCEEEEEEc
Confidence 3446799999999876554
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.63 E-value=3.9e-14 Score=152.53 Aligned_cols=269 Identities=13% Similarity=0.129 Sum_probs=197.7
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
.|+.|+|-|||..|+.+. ++ .+-|+|...|.+.+ +|- +|..-+..|+++ .||+.+|||+.|+.|
T Consensus 14 ci~d~afkPDGsqL~lAA----g~-------rlliyD~ndG~llq--tLK--gHKDtVycVAys-~dGkrFASG~aDK~V 77 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GS-------RLLVYDTSDGTLLQ--PLK--GHKDTVYCVAYA-KDGKRFASGSADKSV 77 (1081)
T ss_pred chheeEECCCCceEEEec----CC-------EEEEEeCCCccccc--ccc--cccceEEEEEEc-cCCceeccCCCceeE
Confidence 799999999999998854 34 67899998887643 222 244456789998 799999999999999
Q ss_pred EEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE
Q 011452 218 KVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 218 KlWdl~~g~~l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
-||+-+---.+.--|++.|+++.|.| ...|++. +- ...-+|+.+.-.+.+--. ..++.+.+|. .||++++.|
T Consensus 78 I~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasC-sL---sdFglWS~~qK~V~K~ks--s~R~~~CsWt-nDGqylalG 150 (1081)
T KOG1538|consen 78 IIWTSKLEGILKYSHNDAIQCMSFNPITHQLASC-SL---SDFGLWSPEQKSVSKHKS--SSRIICCSWT-NDGQYLALG 150 (1081)
T ss_pred EEecccccceeeeccCCeeeEeecCchHHHhhhc-ch---hhccccChhhhhHHhhhh--heeEEEeeec-CCCcEEEEe
Confidence 99986532223333678999999999 5555544 33 246789986644433111 2466788886 678888889
Q ss_pred eCCCcEEEEECCCCee--EEecccCCCceEEEEEcCCC-----cEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCe
Q 011452 297 QENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNT 368 (485)
Q Consensus 297 s~D~tIkIWDv~tg~~--~~~l~gh~~~v~avaFspdg-----~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v 368 (485)
-.||||-|-|-...+. ++...|....|++++|+|.. ..++... ..|+..+.+.|+.+..=. .....|.|
T Consensus 151 ~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r-~L~FdP~C-- 227 (1081)
T KOG1538|consen 151 MFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR-ALNFDPCC-- 227 (1081)
T ss_pred ccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccc-cCCCCchh--
Confidence 9999999997653333 44455778899999999964 3566666 778888888887664211 12233444
Q ss_pred eEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccccc
Q 011452 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRI 448 (485)
Q Consensus 369 ~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
|..-|+|.++.-|+. |+-++++- ..|-.|.|+-..+
T Consensus 228 --isYf~NGEy~LiGGs-----------dk~L~~fT-R~GvrLGTvg~~D------------------------------ 263 (1081)
T KOG1538|consen 228 --ISYFTNGEYILLGGS-----------DKQLSLFT-RDGVRLGTVGEQD------------------------------ 263 (1081)
T ss_pred --heeccCCcEEEEccC-----------CCceEEEe-ecCeEEeeccccc------------------------------
Confidence 456689999998865 79999997 4488888875432
Q ss_pred ccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 449 RSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 449 ~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|||+|+..|++|.++-|..||||..++
T Consensus 264 --------~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 264 --------SWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred --------eeEEEEEEccCCceEEEEEccCeeehhh
Confidence 2999999999999999999999998765
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=5.2e-15 Score=157.06 Aligned_cols=252 Identities=15% Similarity=0.175 Sum_probs=180.3
Q ss_pred cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc---cceeee-ccccCceEEEEeCCCCeEE
Q 011452 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG---FALFES-ESLKWPGFVEFDDVNGKVL 208 (485)
Q Consensus 133 g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~---~~lf~~-~~~~~~~~V~Fs~pnG~~L 208 (485)
.+|.+.|+.++|.|----||++|. | +++++|.++..+.... .++++. .|-+.+-+|... +||+.+
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~se----d------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ 359 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASE----D------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHC 359 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEecc----c------cchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEE
Confidence 458889999999998889999874 4 5889999833222111 223332 355566678996 799999
Q ss_pred EEeeCCCcEEEeecC-------CCe---EEEEE--cCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeec
Q 011452 209 TYSAQDSIYKVFDLK-------NYT---MLYSI--SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (485)
Q Consensus 209 as~s~D~tiKlWdl~-------~g~---~l~tl--~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~ 275 (485)
-+|+.|++|+.|++. ++. +..++ |.+.||.+++|+ -..|+++ +.|+|+++|+...... -+|..
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEeeccCCcCc-cccCC
Confidence 999999999999543 121 22233 456899999995 4445544 4568999999855444 55543
Q ss_pred CCcce--eEEEEEecCCCEEEEEeCCCcE---EEEECCCCeeEEeccc-------CCCceEEEEEcCCCcEEEEEe-CCc
Q 011452 276 LLHRN--KKVDFIEQFNEKLLVKQENENL---QILDVRNFELTEVSRT-------EFMTPSAFIFLYENQLFLTFR-NRT 342 (485)
Q Consensus 276 ~~~~~--~~V~f~~~~~~~lls~s~D~tI---kIWDv~tg~~~~~l~g-------h~~~v~avaFspdg~llaS~s-D~T 342 (485)
-..+. .+|+|.. ..++....+.+. .|.|..++.-+.++.- -...++-|+..|.+.+..++- |++
T Consensus 436 ~~e~g~Plsvd~~s---s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTS---SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred ccccCCcceEeecc---chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 22222 3677642 222222233333 4445555554444421 124677788899999999998 999
Q ss_pred EEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 343 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
|++.|.. |+++.....|... |.+++|-|+|=+|+|++. ||.|++|.+....|+....+|.
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~s-----vtslai~~ng~~l~s~s~-----------d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKDS-----VTSLAIDPNGPYLMSGSH-----------DGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecccccccccchheeeccce-----ecceeecCCCceEEeecC-----------Cceeehhhccchheeecccccc
Confidence 9999995 9999999999877 999999999999999997 7999999999999999988885
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.62 E-value=1.9e-14 Score=143.36 Aligned_cols=262 Identities=13% Similarity=0.162 Sum_probs=183.3
Q ss_pred cccccccCCCCcccccccccccccceEEEEEe--cCEEEEEeCC--------CeEEeeecccC---------cEEEEeec
Q 011452 73 QEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQS--------GVCAAFCRETN---------QRICFLNV 133 (485)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~d--------gtiklW~~~tG---------~~l~tl~g 133 (485)
|...--+++........-|+-+-+.|+.|+.+ .+.|++.... --+.+|.+... ++++.|..
T Consensus 41 qVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt 120 (370)
T KOG1007|consen 41 QVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT 120 (370)
T ss_pred eeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH
Confidence 33344455655555555566677889999988 5555544433 34678987632 24555654
Q ss_pred CCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeecccc---CceEEEEeC-CCCeEEE
Q 011452 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK---WPGFVEFDD-VNGKVLT 209 (485)
Q Consensus 134 ~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~---~~~~V~Fs~-pnG~~La 209 (485)
.+-+.|.+|-|.||++.||+.- + ..+-+|++..+.-..+ .+...++.. +-.+-+++| .||..++
T Consensus 121 eavg~i~cvew~Pns~klasm~----d-------n~i~l~~l~ess~~va-ev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD----D-------NNIVLWSLDESSKIVA-EVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec----c-------CceEEEEcccCcchhe-eecccccccccceecccccCCCCccceEE
Confidence 4455799999999999998843 3 4888999876654211 111111111 111335664 5788877
Q ss_pred EeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCC-ceEEEEEcCCCCeeEEEEecCC-CeEEEEeecCCcceeEEE
Q 011452 210 YSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISPG-IMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 210 s~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafSpg-~~ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~~~~~V~ 284 (485)
+. .|+|++.||+.+-++.+.+. ++.|.++.|.|+ +.+++++ ++|+.|||||... -..++++.+|.|++|.|.
T Consensus 189 tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~--gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 189 TT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTC--GDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred Ee-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEc--CCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 65 49999999999988888885 567999999984 3444443 4569999999763 456899999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCe-----------------------------eEEecccCCCceEEEEEcC-CCcE
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFE-----------------------------LTEVSRTEFMTPSAFIFLY-ENQL 334 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~-----------------------------~~~~l~gh~~~v~avaFsp-dg~l 334 (485)
|.+..++.+|++|.|..|-||...+-. .++++..|.+.|++++||. |==+
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 998778888999999999999755311 2456677999999999864 5556
Q ss_pred EEEEe-CCcEEEEeCC
Q 011452 335 FLTFR-NRTVAVWNFR 349 (485)
Q Consensus 335 laS~s-D~TIklWd~~ 349 (485)
|||-| ||-+-|=.+.
T Consensus 346 FASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 346 FASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccCceEEeecCC
Confidence 77778 8877665553
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3e-15 Score=168.50 Aligned_cols=240 Identities=10% Similarity=0.102 Sum_probs=186.5
Q ss_pred ccceEEEEEe--cC----EEEEEeCCCeEEeeeccc---Cc---EEEEeecCCcccEEEEEEeeCCC-EEEEEEeecCCC
Q 011452 95 RSKIIEIVAA--RD----IVFALAQSGVCAAFCRET---NQ---RICFLNVTADEVIRSLFYNKNND-SLITVSVYASDN 161 (485)
Q Consensus 95 ~s~V~~i~~s--~~----~ias~s~dgtiklW~~~t---G~---~l~tl~g~~~~~i~sv~~spdg~-~Las~S~d~~~d 161 (485)
.++-.+++.. ++ +||.|.+||.|-|||... |+ .|.+... |.+.|+.|.|||... .||+++ ++
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa----~~ 138 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGA----DD 138 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccC----CC
Confidence 3344667776 44 499999999999999664 32 4556666 888999999999976 888744 45
Q ss_pred CcccceeEEEEeEeccCCcCcccceeeec---cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----C
Q 011452 162 FSSLRCRSTRIEYIRRGKPDAGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----K 234 (485)
Q Consensus 162 ~stL~~~t~~lw~i~~G~~~~~~~lf~~~---~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~ 234 (485)
..|-|||+..=+. =|... ...-|.+|++.-....+|||++.++.+-||||+..+.+..+.. -
T Consensus 139 ------geI~iWDlnn~~t-----P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 139 ------GEILIWDLNKPET-----PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ------CcEEEeccCCcCC-----CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 6999999854221 12111 1223446777655678899999999999999998776666642 2
Q ss_pred cEEEEEEcCC--ceEEEEEcCCCCeeEEEEecCC-CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 011452 235 NVQEIKISPG--IMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311 (485)
Q Consensus 235 ~V~~VafSpg--~~ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~ 311 (485)
.+..|+|+|+ -.+++++.++..-.|++||+.. -..+++|++|+..+-+++|...|+..||+++.|+.|-+||..|||
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 4889999983 2444444555668999999653 347899999999999999998888899999999999999999999
Q ss_pred eEEecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCCC
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRG 350 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~G 350 (485)
.+-.+....+|+..|-|.|..- +|+.++ ||.|.|+.++|
T Consensus 288 vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 288 VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 9999988889999999999888 777888 99999999964
No 181
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.5e-15 Score=169.15 Aligned_cols=275 Identities=12% Similarity=0.146 Sum_probs=199.4
Q ss_pred cCEEEEEeCCCeEEeeecc--cCc----EEEEeecCCcccEEEEEEeeCCCE---EEEEEeecCCCCcccceeEEEEeEe
Q 011452 105 RDIVFALAQSGVCAAFCRE--TNQ----RICFLNVTADEVIRSLFYNKNNDS---LITVSVYASDNFSSLRCRSTRIEYI 175 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~--tG~----~l~tl~g~~~~~i~sv~~spdg~~---Las~S~d~~~d~stL~~~t~~lw~i 175 (485)
+++=++-|.+.+..||.+. .+. ....+. .++..+.|+|.+.|.- ||.+ |.+| +.|-||+.
T Consensus 29 q~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaG---G~ed------G~I~ly~p 97 (1049)
T KOG0307|consen 29 QQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAG---GLED------GNIVLYDP 97 (1049)
T ss_pred hccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeec---cccC------CceEEecc
Confidence 3333444556666666543 122 222232 3456889999999987 3332 3466 79999996
Q ss_pred ccCCcCcccceeee--ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc----CCcEEEEEEc-CCceEE
Q 011452 176 RRGKPDAGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQEIKIS-PGIMLL 248 (485)
Q Consensus 176 ~~G~~~~~~~lf~~--~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~----~~~V~~VafS-pg~~ll 248 (485)
..=.-+....+..+ .|-++|..++|++-.+.+||||+.||.|-|||+++-+.-++.. ...|.+|++. --+.++
T Consensus 98 ~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 98 ASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred hhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHh
Confidence 32101111222222 3667788899986556699999999999999999866545542 3689999999 444555
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcc--eeEEEEEecCCCEEEEEeCC---CcEEEEECCC-CeeEEecccCCCc
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHR--NKKVDFIEQFNEKLLVKQEN---ENLQILDVRN-FELTEVSRTEFMT 322 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~--~~~V~f~~~~~~~lls~s~D---~tIkIWDv~t-g~~~~~l~gh~~~ 322 (485)
++++ .++++-|||+..-+.+-.|..|..+ +..|+|.+..-.+|+++++| -.|++||++. ...++++++|+..
T Consensus 178 AS~s--~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G 255 (1049)
T KOG0307|consen 178 ASGS--PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG 255 (1049)
T ss_pred hccC--CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc
Confidence 4433 3478999999988888788766553 45899985545566666533 6899999996 4568889999999
Q ss_pred eEEEEEcCCC-cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCC
Q 011452 323 PSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 323 v~avaFspdg-~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~Dg 398 (485)
|.++.|.+.. .+|+|++ |+.|-+||.+ ||.|..|-....| +..|.|.|--- .++.++. ||
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW-----~fdv~w~pr~P~~~A~asf-----------dg 319 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNW-----CFDVQWCPRNPSVMAAASF-----------DG 319 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcc-----eeeeeecCCCcchhhhhee-----------cc
Confidence 9999999877 8899998 9999999996 9999999998899 88999999654 7777777 79
Q ss_pred eEEEEeCCCC
Q 011452 399 SINISNILTG 408 (485)
Q Consensus 399 tIklWdl~TG 408 (485)
.|-|..+.++
T Consensus 320 kI~I~sl~~~ 329 (1049)
T KOG0307|consen 320 KISIYSLQGT 329 (1049)
T ss_pred ceeeeeeecC
Confidence 9999998754
No 182
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=1.9e-15 Score=165.51 Aligned_cols=277 Identities=13% Similarity=0.095 Sum_probs=200.6
Q ss_pred ccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 91 FLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 91 ~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
-|-|++.|+.++|. |-+|++||.|..+|+|..+++.|+.++.| |..-|+.++-|.++-++|++| .| .
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS----~D------~ 254 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAAS----ND------K 254 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhhhhhhcc----cC------c
Confidence 35689999999998 99999999999999999999999999988 888999999999999998877 45 6
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE---E---cCCcEEEEEEc
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS---I---SDKNVQEIKIS 242 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t---l---~~~~V~~VafS 242 (485)
.|++|-+++|.+.. .|++ +.+.+.+++|+| - ++++.|+|+++||..=--.+|. + .+..|-++-|.
T Consensus 255 vIrvWrl~~~~pvs--vLrg--htgavtaiafsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVS--VLRG--HTGAVTAIAFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred eEEEEecCCCchHH--HHhc--cccceeeeccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecc
Confidence 89999999999843 3444 457778999984 3 3778999999999761111222 0 12457777777
Q ss_pred CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCc
Q 011452 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMT 322 (485)
Q Consensus 243 pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~ 322 (485)
..++-..+.+ .|.+.+.|.++- +..+.....=|.++...+...+++=.+.-+.+|++-+|.+.+.+.+|.+.
T Consensus 326 ~~~~~f~Tgs--~d~ea~n~e~~~------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 326 NNGDRFLTGS--RDGEARNHEFEQ------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred cccccccccc--CCcccccchhhH------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence 6444433433 346777776532 11111111122222211234445568899999999999999999999999
Q ss_pred eEEEEEcCCCcEEE-EEe-CCcEEEEeC-CCcEEE-EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 323 PSAFIFLYENQLFL-TFR-NRTVAVWNF-RGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 323 v~avaFspdg~lla-S~s-D~TIklWd~-~G~ll~-tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
++.+-|.|-+..++ +++ ||.+-|||+ +|-.++ -+.+|.. +..-.||+||+.++... | -|
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k------l~d~kFSqdgts~~lsd-----~------hg 460 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK------LVDGKFSQDGTSIALSD-----D------HG 460 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce------eeccccCCCCceEecCC-----C------CC
Confidence 99999999877766 556 999999999 477544 3466643 56788999999988642 2 47
Q ss_pred eEEEEeCCCCeEEE
Q 011452 399 SINISNILTGKCLA 412 (485)
Q Consensus 399 tIklWdl~TGk~l~ 412 (485)
-+.|...-.|+...
T Consensus 461 ql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 461 QLYILGTGQSKSQK 474 (1113)
T ss_pred ceEEeccCCCcccc
Confidence 77776644444433
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=167.17 Aligned_cols=228 Identities=15% Similarity=0.196 Sum_probs=171.6
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
|+..+.++.|| ..|.++.+|+.|..||||..+++.|+.+..++ .|..+|.+-...+.+++ +.|.-|++|-+.+|.
T Consensus 189 H~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa--S~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 189 HRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA--SNDKVIRVWRLPDGA 265 (1113)
T ss_pred hhhheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc--ccCceEEEEecCCCc
Confidence 56667788997 79999999999999999999999999999764 79999999655554443 466899999999999
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe---------------------------------
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV--------------------------------- 315 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~--------------------------------- 315 (485)
++..|.||++.|.+++|+|. .++|.|+|+++||.+ -+.+..
T Consensus 266 pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 266 PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred hHHHHhccccceeeeccCcc-----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 99999999999999999852 377899999999988 111110
Q ss_pred --------cccCCCceEEEEEcCCC-cEEEEEe-CCcEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEE-EE
Q 011452 316 --------SRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLII-SY 383 (485)
Q Consensus 316 --------l~gh~~~v~avaFspdg-~llaS~s-D~TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~La-S~ 383 (485)
+..|...+.-+.++.|- -..+++. +--+++||+ +|.+++.+.+|... +.-+.|.|=.-.|+ |+
T Consensus 340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~-----~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE-----VYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc-----eeeeeecCCCcHhhhhc
Confidence 01111111111122111 3445555 677899999 59999999999987 88999999665555 44
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEE
Q 011452 384 CKADSDDPLAEGNAGSINISNILTGKCLAKI-RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITAL 462 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 462 (485)
+ .||++-|||+-.|--++.. .+|. .+..-
T Consensus 415 g-----------~dgst~iwdi~eg~pik~y~~gh~---------------------------------------kl~d~ 444 (1113)
T KOG0644|consen 415 G-----------YDGSTIIWDIWEGIPIKHYFIGHG---------------------------------------KLVDG 444 (1113)
T ss_pred c-----------CCCceEeeecccCCcceeeecccc---------------------------------------eeecc
Confidence 4 4899999999888766543 4453 44457
Q ss_pred EEcCCCCEEEEecCCCcEEE
Q 011452 463 FYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 463 ~fspDg~~LaSgs~DgtVkl 482 (485)
.||+||+.++-....|.+.+
T Consensus 445 kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 445 KFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ccCCCCceEecCCCCCceEE
Confidence 89999999988877777655
No 184
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=5.7e-14 Score=134.05 Aligned_cols=129 Identities=13% Similarity=0.191 Sum_probs=100.2
Q ss_pred cEEEEECCC-CeeEEec-ccCCCceEEEEEcCCCcEEEEE--e-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 301 NLQILDVRN-FELTEVS-RTEFMTPSAFIFLYENQLFLTF--R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 301 tIkIWDv~t-g~~~~~l-~gh~~~v~avaFspdg~llaS~--s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
...|+-++. +.....+ ..+...|.+++|+|+|+.||.. . +++|.|||++++.+.+|..+. ++.|.|||
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~-------~n~i~wsP 110 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQP-------RNTISWSP 110 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCC-------ceEEEECC
Confidence 355555532 2223333 2234469999999999997654 4 789999999999999996543 78999999
Q ss_pred CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcc
Q 011452 376 DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEA 455 (485)
Q Consensus 376 DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (485)
+|++||.++. +...|.|.+||+.+.+++.++. |.
T Consensus 111 ~G~~l~~~g~--------~n~~G~l~~wd~~~~~~i~~~~-~~------------------------------------- 144 (194)
T PF08662_consen 111 DGRFLVLAGF--------GNLNGDLEFWDVRKKKKISTFE-HS------------------------------------- 144 (194)
T ss_pred CCCEEEEEEc--------cCCCcEEEEEECCCCEEeeccc-cC-------------------------------------
Confidence 9999999986 2235889999999999998874 32
Q ss_pred cCCeEEEEEcCCCCEEEEecC------CCcEEEcc
Q 011452 456 LEDITALFYDEDRNEIYTGNR------HGLVHVWS 484 (485)
Q Consensus 456 l~~V~sl~fspDg~~LaSgs~------DgtVklWd 484 (485)
.++.++|||||+.|+|+.. |+.++||+
T Consensus 145 --~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 145 --DATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred --cEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 5678999999999999974 89999997
No 185
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.5e-13 Score=142.44 Aligned_cols=222 Identities=9% Similarity=0.097 Sum_probs=148.4
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
.+.+||.+ |.....+.. +...+.+..|||||+.|+.++.... + .++.+|++..|+.. .+... .+.+
T Consensus 183 ~l~~~d~d-g~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g-~------~~i~~~dl~~g~~~---~l~~~--~g~~ 248 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTD-GSSLVLTPRFSPNRQEITYMSYANG-R------PRVYLLDLETGQRE---LVGNF--PGMT 248 (435)
T ss_pred EEEEECCC-CCCcEEEec-CCCCeEeeEECCCCCEEEEEEecCC-C------CEEEEEECCCCcEE---EeecC--CCcc
Confidence 67788876 666666765 6678999999999999999885432 3 58899999888752 22211 2233
Q ss_pred eEEEEeCCCCeEEE-EeeCCCc--EEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEc-CCCCeeEEEEecCCCeE
Q 011452 196 GFVEFDDVNGKVLT-YSAQDSI--YKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTK-ASGHVPLKILSIEDGTV 269 (485)
Q Consensus 196 ~~V~Fs~pnG~~La-s~s~D~t--iKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss-~~~D~tIklWdi~tG~~ 269 (485)
...+|+ |||+.|+ +.+.|+. |.+||++++++.. +. ...+.+.+|||++..++..+ .+....|.+||+.+|+.
T Consensus 249 ~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 249 FAPRFS-PDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred cCcEEC-CCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 467898 7998776 4455655 6667888877543 43 23467799998666444444 33345788999877655
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEeC---CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC----
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR---- 341 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s~---D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~---- 341 (485)
+.+..+...+....|+ |++++|+..+. +..|.+||+.++.......+ ..+....|+|||+.|+-.+ ++
T Consensus 327 -~~lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 327 -RRISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred -EEeecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCC
Confidence 4444333455667786 78888888653 24788899876654333222 2467789999999987655 22
Q ss_pred --cEEEEeCCCcEEEEee
Q 011452 342 --TVAVWNFRGELVTSFE 357 (485)
Q Consensus 342 --TIklWd~~G~ll~tl~ 357 (485)
.+.+.|++|...+.+.
T Consensus 403 ~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 403 APKLYTVDLTGRNEREVP 420 (435)
T ss_pred cceEEEEECCCCceEEcc
Confidence 4566677766555554
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=3.3e-13 Score=137.87 Aligned_cols=227 Identities=17% Similarity=0.239 Sum_probs=174.6
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
+..|. .+...|+-|+.|| +|++....-...+... +..|-+.-||..-..+++. +.-..+|+.++..+..+=.+.
T Consensus 10 ~~~~N-qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~--~qpr~Lkv~~~Kk~~~ICe~~ 85 (391)
T KOG2110|consen 10 FIGFN-QDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSI--KQPRKLKVVHFKKKTTICEIF 85 (391)
T ss_pred eeeec-cceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEec--CCCceEEEEEcccCceEEEEe
Confidence 45575 6888888888887 7899887544433322 3468888999765555543 211559999988777664443
Q ss_pred cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc---CCCceEEEEEcCCCcEEEEEe---CCcEEEEeC
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT---EFMTPSAFIFLYENQLFLTFR---NRTVAVWNF 348 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g---h~~~v~avaFspdg~llaS~s---D~TIklWd~ 348 (485)
. .+.+-+|.+.. ++|++.=++. |-|+|+++=++++++.. |...+-|+.+++++-+||-=+ -|.|.|||+
T Consensus 86 f-pt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 86 F-PTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred c-CCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 2 25777888752 5666664433 99999999999888743 555677777777888888432 789999999
Q ss_pred C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe-EEEEeCCCCeEEEEecCCCCCCCCccc
Q 011452 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS-INISNILTGKCLAKIRASNGLPAENEC 426 (485)
Q Consensus 349 ~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt-IklWdl~TGk~l~tl~gH~~~~~~~~~ 426 (485)
. -+.+.+++.|... +-.++|+|||.+||++|. .|| ||++.+.+|+.+..|+--.-
T Consensus 161 ~nl~~v~~I~aH~~~-----lAalafs~~G~llATASe-----------KGTVIRVf~v~~G~kl~eFRRG~~------- 217 (391)
T KOG2110|consen 161 INLQPVNTINAHKGP-----LAALAFSPDGTLLATASE-----------KGTVIRVFSVPEGQKLYEFRRGTY------- 217 (391)
T ss_pred ccceeeeEEEecCCc-----eeEEEECCCCCEEEEecc-----------CceEEEEEEcCCccEeeeeeCCce-------
Confidence 5 8899999999987 999999999999999997 576 79999999999999976431
Q ss_pred ccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 427 SCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
| -.|.+|+|+||+++|+..|.-+||||..
T Consensus 218 ----------~-------------------~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 218 ----------P-------------------VSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ----------e-------------------eEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 1 2899999999999999999999999975
No 187
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.7e-13 Score=144.79 Aligned_cols=207 Identities=13% Similarity=0.098 Sum_probs=136.5
Q ss_pred CcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcC-CCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC
Q 011452 215 SIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKA-SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~-~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
..+.+||.. |.....+ +...|.+.+|||++..+++.+. +....|.+||+.+|+... +....+.+..++|+ ||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~S-PDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWS-PDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCC
Confidence 356666663 4433333 3467899999997765555443 333579999999997643 33222455678886 7888
Q ss_pred EEEEE-eCCCcEEEEE--CCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeC--CCcEEEEeecCCCCCC
Q 011452 292 KLLVK-QENENLQILD--VRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHP 364 (485)
Q Consensus 292 ~lls~-s~D~tIkIWD--v~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~--~G~ll~tl~gH~~~~~ 364 (485)
+|+.. +.|+..+||. +.+++. +.+..|........|+|||+.|+..+ ++...||.+ .+.....+..+...
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~-- 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY-- 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC--
Confidence 88764 6888877775 555554 44555555567788999999888666 567888876 44333333222222
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
..+.+|||||++|+..+.. +.+..|.+||+.+|+.. .+..+.
T Consensus 330 ---~~~~~~SpDG~~Ia~~s~~--------~g~~~I~v~d~~~g~~~-~lt~~~-------------------------- 371 (427)
T PRK02889 330 ---NTSPRISPDGKLLAYISRV--------GGAFKLYVQDLATGQVT-ALTDTT-------------------------- 371 (427)
T ss_pred ---cCceEECCCCCEEEEEEcc--------CCcEEEEEEECCCCCeE-EccCCC--------------------------
Confidence 3467899999999977651 12247999999988754 443321
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecCCC
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNRHG 478 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg 478 (485)
...++.|+|||+.|+.++.++
T Consensus 372 -------------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 372 -------------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -------------CccCceECCCCCEEEEEEecC
Confidence 234579999999988877554
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.59 E-value=1.2e-13 Score=148.73 Aligned_cols=269 Identities=11% Similarity=0.110 Sum_probs=201.3
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~ 174 (485)
.|.+|+|. |..|+-++ +..+-++|...|.++.+|.+ |.+.|++|+|+.||+..||+++ | +.+-||.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~a----D------K~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGSA----D------KSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCCC----c------eeEEEec
Confidence 46677777 44443333 34677999999999999998 8889999999999999998664 4 5888998
Q ss_pred ec-cCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcC
Q 011452 175 IR-RGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKA 253 (485)
Q Consensus 175 i~-~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~ 253 (485)
-+ .|- ..-.|...+-...|. |=.+.|||+|- +..-+|..+.......-....|.+.++..+|++++-+-
T Consensus 82 ~klEG~-------LkYSH~D~IQCMsFN-P~~h~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~- 151 (1081)
T KOG1538|consen 82 SKLEGI-------LKYSHNDAIQCMSFN-PITHQLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGM- 151 (1081)
T ss_pred ccccce-------eeeccCCeeeEeecC-chHHHhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEec-
Confidence 52 222 222244556678997 56678898874 35668876543222111235788899996555555443
Q ss_pred CCCeeEEEEecCCCeEEEEee---cCCcceeEEEEEecCC----CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEE
Q 011452 254 SGHVPLKILSIEDGTVLKSFN---HLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~---~~~~~~~~V~f~~~~~----~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~av 326 (485)
.++||.|=+ .+|++--.+. |....+++|+|+|..+ +.+++.-+..|+-.+.+. |+.+.--+.-...+-++
T Consensus 152 -~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Ci 228 (1081)
T KOG1538|consen 152 -FNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCI 228 (1081)
T ss_pred -cCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhh
Confidence 347888877 4777655554 4566789999986443 577888899999999987 66666444445567788
Q ss_pred EEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 327 IFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 327 aFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.+-|+|.+++-|+ |+.++++.-+|-++-|+-....| ||+|+..|++|+.+.||. ||||--+|+
T Consensus 229 sYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~W-----IWtV~~~PNsQ~v~~GCq-----------DGTiACyNl 292 (1081)
T KOG1538|consen 229 SYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSW-----IWTVQAKPNSQYVVVGCQ-----------DGTIACYNL 292 (1081)
T ss_pred eeccCCcEEEEccCCCceEEEeecCeEEeecccccee-----EEEEEEccCCceEEEEEc-----------cCeeehhhh
Confidence 8899999999988 99999999999999999888889 999999999999999998 799988887
Q ss_pred C
Q 011452 406 L 406 (485)
Q Consensus 406 ~ 406 (485)
.
T Consensus 293 ~ 293 (1081)
T KOG1538|consen 293 I 293 (1081)
T ss_pred H
Confidence 4
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.2e-13 Score=139.90 Aligned_cols=280 Identities=14% Similarity=0.165 Sum_probs=191.4
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEee--CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK--NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~sp--dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~ 182 (485)
...+|++...|++||+|..||+.+..+.+ +...++-+.|.. -.+.++++|.| ++|++||+|.-+-.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssD----------G~Vr~wD~Rs~~e~- 107 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSD----------GTVRLWDIRSQAES- 107 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccC----------CeEEEEEeecchhh-
Confidence 35688899999999999999999998887 555788898866 46677887743 49999999765542
Q ss_pred ccceeeeccccCceEEEEeCC-CCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEE
Q 011452 183 GFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs~p-nG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIkl 261 (485)
++..|+..+ + -.+..|+-. ++++++.|.. + ...|-.|-+
T Consensus 108 a~~~~~~~~-~-~~f~~ld~nck~~ii~~GtE----------------------------------~----~~s~A~v~l 147 (376)
T KOG1188|consen 108 ARISWTQQS-G-TPFICLDLNCKKNIIACGTE----------------------------------L----TRSDASVVL 147 (376)
T ss_pred hheeccCCC-C-CcceEeeccCcCCeEEeccc----------------------------------c----ccCceEEEE
Confidence 233455422 1 136777632 5667776631 0 011235666
Q ss_pred EecCCCeE-EEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe----eEEecccCCCceEEEEEcCCC-cE
Q 011452 262 LSIEDGTV-LKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE----LTEVSRTEFMTPSAFIFLYEN-QL 334 (485)
Q Consensus 262 Wdi~tG~~-L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~----~~~~l~gh~~~v~avaFspdg-~l 334 (485)
||+..-+. +..+. .|..-|..|.|.|.++..||+||-||-|.|+|+..-. ++.++ .|...|-.+.|+-++ +.
T Consensus 148 wDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykr 226 (376)
T KOG1188|consen 148 WDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKR 226 (376)
T ss_pred EEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcce
Confidence 76655444 44443 6778889999999999999999999999999998643 33444 356678899999888 23
Q ss_pred EEEEe-CCcEEEEeCC-CcEEEEeecCCC-----CC--CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 335 FLTFR-NRTVAVWNFR-GELVTSFEDHLL-----WH--PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 335 laS~s-D~TIklWd~~-G~ll~tl~gH~~-----~~--~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+-.-+ ..|.++|+++ |.++..|+.-.. +. ...++-+..-..++++.+.+..+ -|+..+.=+
T Consensus 227 I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~----------~n~~~~~~~ 296 (376)
T KOG1188|consen 227 IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD----------SNKGTIFPL 296 (376)
T ss_pred EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccc----------cCceeEEEe
Confidence 44556 9999999996 888877764421 00 00113333334566777666541 234333322
Q ss_pred ---C---CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCc
Q 011452 406 ---L---TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGL 479 (485)
Q Consensus 406 ---~---TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dgt 479 (485)
. +++.++.|.||.. +-|+++.|.-.+..|+||++||.
T Consensus 297 ~~~~s~~~~~~~a~l~g~~~-------------------------------------eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQGGHE-------------------------------------EIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred eecccccccCccccccCCcH-------------------------------------HHHHHHhhhcccceeeccCCCce
Confidence 2 3556677777541 38899999999999999999999
Q ss_pred EEEcc
Q 011452 480 VHVWS 484 (485)
Q Consensus 480 VklWd 484 (485)
+.+|.
T Consensus 340 l~~Wk 344 (376)
T KOG1188|consen 340 LQAWK 344 (376)
T ss_pred EEEEe
Confidence 99996
No 190
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=4.5e-13 Score=141.61 Aligned_cols=246 Identities=13% Similarity=0.072 Sum_probs=156.9
Q ss_pred EecCEEEEEeCCC--eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc
Q 011452 103 AARDIVFALAQSG--VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (485)
Q Consensus 103 ~s~~~ias~s~dg--tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~ 180 (485)
|++.+.+.....+ .+.+||.+ |...+.+.. +.+.+.+.+|||||+.|+.++... .. ..+.+|++..|+.
T Consensus 162 f~~~iayv~~~~~~~~L~~~D~d-G~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~-~~------~~I~~~dl~~g~~ 232 (427)
T PRK02889 162 FSTRIAYVIKTGNRYQLQISDAD-GQNAQSALS-SPEPIISPAWSPDGTKLAYVSFES-KK------PVVYVHDLATGRR 232 (427)
T ss_pred cccEEEEEEccCCccEEEEECCC-CCCceEecc-CCCCcccceEcCCCCEEEEEEccC-CC------cEEEEEECCCCCE
Confidence 4455555443333 45566654 766666655 566899999999999999877432 22 4688999988875
Q ss_pred CcccceeeeccccCceEEEEeCCCCeEEEE-eeCCCcEEEeec--CCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCC
Q 011452 181 DAGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVFDL--KNYTMLYSISD--KNVQEIKISPGIMLLIFTKASG 255 (485)
Q Consensus 181 ~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las-~s~D~tiKlWdl--~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~ 255 (485)
. .+... .+.....+|+ |||+.|+. .+.|+...||.+ .++. +..+.. ..+.+..|||++..++..+. .
T Consensus 233 ~---~l~~~--~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~-~ 304 (427)
T PRK02889 233 R---VVANF--KGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSD-R 304 (427)
T ss_pred E---EeecC--CCCccceEEC-CCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEec-C
Confidence 2 22211 1344578998 79988874 577888787765 4444 444432 34567899997765555443 2
Q ss_pred CeeEEEE--ecCCCeEEE-EeecCCcceeEEEEEecCCCEEEEEeCC---CcEEEEECCCCeeEEecccCCCceEEEEEc
Q 011452 256 HVPLKIL--SIEDGTVLK-SFNHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 256 D~tIklW--di~tG~~L~-tl~~~~~~~~~V~f~~~~~~~lls~s~D---~tIkIWDv~tg~~~~~l~gh~~~v~avaFs 329 (485)
++...|| ++.+|+... ++.+ ......+|+ |+|..|+..+.+ ..|.+||+.+++......++ ......|+
T Consensus 305 ~g~~~Iy~~~~~~g~~~~lt~~g--~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~~s 379 (427)
T PRK02889 305 GGAPQIYRMPASGGAAQRVTFTG--SYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESPSFA 379 (427)
T ss_pred CCCcEEEEEECCCCceEEEecCC--CCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCceEC
Confidence 2345555 555665432 3332 334467786 788888876533 37999999998876554332 34678999
Q ss_pred CCCcEEEEEe-CC-c--EEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 330 YENQLFLTFR-NR-T--VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 330 pdg~llaS~s-D~-T--IklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
|||+.|+.++ ++ . +.+-+.+|+..+.+..+..- +...++||
T Consensus 380 pdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~-----~~~p~wsp 424 (427)
T PRK02889 380 PNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGD-----VREPSWGP 424 (427)
T ss_pred CCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCC-----CCCCccCC
Confidence 9999998887 33 3 33334568877777655433 55666666
No 191
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.55 E-value=2.3e-14 Score=147.55 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=128.6
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---------eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE---------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---------~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
..+.++.|...+.++|++++.|..||||-+..++ .+.+|..|...|+.|-|+|+|.+||||+ +++|-||-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 3567888865444588899999999999887543 4556889999999999999999999999 99999997
Q ss_pred CC--------C---------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 348 FR--------G---------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 348 ~~--------G---------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
.. + .....+.+|..- +..++++||+.+|+++|. |+++++||+..|+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-----iydL~Ws~d~~~l~s~s~-----------dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-----IYDLAWSPDSNFLVSGSV-----------DNSVRLWDVHAGQL 157 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccc-----hhhhhccCCCceeeeeec-----------cceEEEEEecccee
Confidence 54 3 134578888866 899999999999999998 79999999999999
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
++.+-+|.+ .|..++++|-.+.++|=|.|...+.
T Consensus 158 ~~~~~dh~~--------------------------------------yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 158 LAILDDHEH--------------------------------------YVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred Eeecccccc--------------------------------------ccceeecchhhhhhhhhccCcccce
Confidence 999999973 7889999999999999998874443
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=134.82 Aligned_cols=286 Identities=15% Similarity=0.175 Sum_probs=203.5
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe------ccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI------RRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i------~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
+.+ |.+.|+.|-||-||+.||+ |+|| +.+++|.+ +..|+ +.+.++-|..-+.+++|+ ..
T Consensus 52 ~~~-H~GCiNAlqFS~N~~~L~S----GGDD------~~~~~W~~de~~~~k~~KP---I~~~~~~H~SNIF~L~F~-~~ 116 (609)
T KOG4227|consen 52 VRE-HTGCINALQFSHNDRFLAS----GGDD------MHGRVWNVDELMVRKTPKP---IGVMEHPHRSNIFSLEFD-LE 116 (609)
T ss_pred hhh-hccccceeeeccCCeEEee----cCCc------ceeeeechHHHHhhcCCCC---ceeccCccccceEEEEEc-cC
Confidence 444 8889999999999999988 5688 89999987 33344 335555454557889998 46
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe-E--EEEeecC
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT-V--LKSFNHL 276 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~-~--L~tl~~~ 276 (485)
...|-||..|++|-+-|+++.+-++.+.. ..|..+..+| +..+++++ .++-|-+||+...+ . +.-+...
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecCC
Confidence 67788999999999999999999998852 3799999998 77776653 34899999998655 1 1222211
Q ss_pred CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee--E-----EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL--T-----EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~--~-----~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~ 348 (485)
...-..+-|.|..+-.||+.++-+-+-+||++.... + .-|..+...-..+.|+|.|..|++-. -.---++|+
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 123348889866566777788999999999985431 1 11111111123567999999999988 555568899
Q ss_pred CC-cEEEEeecCC--CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-----C------------
Q 011452 349 RG-ELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-----G------------ 408 (485)
Q Consensus 349 ~G-~ll~tl~gH~--~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-----G------------ 408 (485)
.- .|-.--.+|. .+...|.+.+.+|--|-. |+|||. +=-|.||.|-- |
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD-----------~~~i~~WklP~~~ds~G~~~IG~~~~~~~ 341 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSD-----------HWGIHIWKLPRANDSYGFTQIGHDEEEMP 341 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCc-----------ccceEEEecCCCccccCccccCcchhhCc
Confidence 63 4433223443 344446677888876654 888885 57799998742 1
Q ss_pred ------eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 409 ------KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 409 ------k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
+.+..|+||.. -|..|-|+|-...|+|.+..+.+||
T Consensus 342 ~~~~i~~~~~VLrGHRS--------------------------------------v~NQVRF~~H~~~l~SSGVE~~~Kl 383 (609)
T KOG4227|consen 342 SEIFIEKELTVLRGHRS--------------------------------------VPNQVRFSQHNNLLVSSGVENSFKL 383 (609)
T ss_pred hhheecceeEEEecccc--------------------------------------cccceeecCCcceEeccchhhheec
Confidence 23445566641 6778999999999999999999999
Q ss_pred cc
Q 011452 483 WS 484 (485)
Q Consensus 483 Wd 484 (485)
|.
T Consensus 384 WS 385 (609)
T KOG4227|consen 384 WS 385 (609)
T ss_pred cc
Confidence 96
No 193
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=1.6e-11 Score=128.43 Aligned_cols=306 Identities=15% Similarity=0.141 Sum_probs=190.8
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccccee
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf 187 (485)
+++...++.+.+.|.+|.+.+.++..+.+ .--++.|+|||+++.+++. + ..+.++|+.+++..+. .
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~r---d-------g~vsviD~~~~~~v~~---i 74 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANR---D-------GTVSVIDLATGKVVAT---I 74 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEET---T-------SEEEEEETTSSSEEEE---E
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcC---C-------CeEEEEECCcccEEEE---E
Confidence 35677899999999999999999976433 4466889999999888764 3 3788999999987331 2
Q ss_pred eeccccCceEEEEeCCCCeEEEEee-CCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCCce-EEEEEcCCCC
Q 011452 188 ESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD---------KNVQEIKISPGIM-LLIFTKASGH 256 (485)
Q Consensus 188 ~~~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~g~~l~tl~~---------~~V~~VafSpg~~-ll~sss~~~D 256 (485)
.. -..+..+++| +||++|+.+. .++++.|+|.++.+.++++.. ..|.+|..+|+.. ++++-.+.
T Consensus 75 ~~--G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~-- 149 (369)
T PF02239_consen 75 KV--GGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT-- 149 (369)
T ss_dssp E---SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT--
T ss_pred ec--CCCcceEEEc-CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC--
Confidence 22 2346689998 7999887654 689999999999999998853 2578888898655 44443322
Q ss_pred eeEEEEecCCCeEEE--EeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecc----cCCCceEEEE--
Q 011452 257 VPLKILSIEDGTVLK--SFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSR----TEFMTPSAFI-- 327 (485)
Q Consensus 257 ~tIklWdi~tG~~L~--tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~----gh~~~v~ava-- 327 (485)
..|-+-|..+.+.+. .+. ....-....|. |++.+++++ ..+..|-++|.++++....+. .|......+-
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE---TTEEEEEE--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEET
T ss_pred CeEEEEEeccccccceeeec-ccccccccccC-cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCC
Confidence 355555776665443 332 11222355664 777888776 477799999999998766542 2332222221
Q ss_pred -------EcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 328 -------FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 328 -------Fspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
..-.+...++.- ...+.+||.. .+.+++++..... .-+.-+||+++|.....- ....+
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g------lFi~thP~s~~vwvd~~~-------~~~~~ 294 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG------LFIKTHPDSRYVWVDTFL-------NPDAD 294 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--------EE--TT-SEEEEE-TT--------SSHT
T ss_pred CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc------ceeecCCCCccEEeeccC-------CCCCc
Confidence 122333333443 5577789986 9999999865432 467789999999987210 11258
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCC
Q 011452 399 SINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHG 478 (485)
Q Consensus 399 tIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg 478 (485)
+|-++|.+|-+.+.+|....+ ..+.-+.|+|||++++-..+|+
T Consensus 295 ~v~viD~~tl~~~~~i~~~~~-------------------------------------~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 295 TVQVIDKKTLKVVKTITPGPG-------------------------------------KRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp -EEEEECCGTEEEE-HHHHHT---------------------------------------EEEEEE-TTSSEEEEEEE--
T ss_pred eEEEEECcCcceeEEEeccCC-------------------------------------CcEeccEECCCCCEEEEEEecC
Confidence 999999999988888864331 1477899999999877766544
Q ss_pred --cEEEcc
Q 011452 479 --LVHVWS 484 (485)
Q Consensus 479 --tVklWd 484 (485)
.|.++|
T Consensus 338 ~~~i~v~D 345 (369)
T PF02239_consen 338 NGAIVVYD 345 (369)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 588876
No 194
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=5.1e-12 Score=132.71 Aligned_cols=235 Identities=10% Similarity=0.078 Sum_probs=151.4
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
.+.++|.+ |.....+.. +.+.+.+..|||||+.|+.++... .. ..+.++++..|+. ..+... .+..
T Consensus 180 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~-~~------~~l~~~~l~~g~~---~~l~~~--~g~~ 245 (430)
T PRK00178 180 TLQRSDYD-GARAVTLLQ-SREPILSPRWSPDGKRIAYVSFEQ-KR------PRIFVQNLDTGRR---EQITNF--EGLN 245 (430)
T ss_pred EEEEECCC-CCCceEEec-CCCceeeeeECCCCCEEEEEEcCC-CC------CEEEEEECCCCCE---EEccCC--CCCc
Confidence 46677776 555555554 556789999999999999877432 12 3677889887865 122221 1233
Q ss_pred eEEEEeCCCCeEEEEe-eCCC--cEEEeecCCCeEEEEEc--CCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeE
Q 011452 196 GFVEFDDVNGKVLTYS-AQDS--IYKVFDLKNYTMLYSIS--DKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~-s~D~--tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~ 269 (485)
...+|+ |||+.|+.. +.++ .|.+||+++++.. .+. ...+.+..|||++. ++.++..+....|.++|+.+|+.
T Consensus 246 ~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 246 GAPAWS-PDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCeEEC-CCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 468898 799988754 4444 5788899988753 233 23456789998665 44443333345788889988885
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEe-CCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--c
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 342 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--T 342 (485)
.. +...........|+ |++.+++..+ .++ .|.+||+.+++......+ .......|+|||+.++-.+ ++ .
T Consensus 324 ~~-lt~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 324 ER-VTFVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred EE-eecCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceE
Confidence 43 22111233456675 7888887765 333 588899999876544332 2233568999999998776 33 4
Q ss_pred EEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 343 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 343 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
|.+++++|...+.+..+... +...+|||
T Consensus 400 l~~~~~~g~~~~~l~~~~g~-----~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSINGRVRLPLPTAQGE-----VREPSWSP 427 (430)
T ss_pred EEEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 66777788777666644333 55666665
No 195
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=7.1e-12 Score=129.91 Aligned_cols=241 Identities=11% Similarity=0.091 Sum_probs=154.3
Q ss_pred CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC---CcEEEeecCC
Q 011452 148 NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKN 224 (485)
Q Consensus 148 g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D---~tiKlWdl~~ 224 (485)
+..++.++..+..+ ...+.+++...++. ..+... -..+.+.+|+ |||+.||+.+.+ .+|.+||+.+
T Consensus 155 ~~~~~~~~~~~~~~-----~~~l~~~d~~g~~~---~~l~~~--~~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~ 223 (417)
T TIGR02800 155 STRIAYVSKSGKSR-----RYELQVADYDGANP---QTITRS--REPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLAT 223 (417)
T ss_pred CCEEEEEEEeCCCC-----cceEEEEcCCCCCC---EEeecC--CCceecccCC-CCCCEEEEEEcCCCCcEEEEEECCC
Confidence 45566666543111 13455666432222 223332 1234467897 899999998754 4899999999
Q ss_pred CeEEEEE-cCCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeC-CC-
Q 011452 225 YTMLYSI-SDKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE-NE- 300 (485)
Q Consensus 225 g~~l~tl-~~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~-D~- 300 (485)
++..... ....+.+++|||++. ++.+.+.+....|.+||+.+|+.. .+..+.......+|+ |++.+|+..+. ++
T Consensus 224 g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~ 301 (417)
T TIGR02800 224 GQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWS-PDGKSIAFTSDRGGS 301 (417)
T ss_pred CCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEEC-CCCCEEEEEECCCCC
Confidence 8643322 234567799998664 554544444567999999888654 444443444567786 68888887653 33
Q ss_pred -cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC---cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 301 -NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR---TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 301 -tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~---TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
.|.+||+.+++.... ..+...+..++|+|||++++..+ +. .|.+||+.+...+.+..+. . .....|+|
T Consensus 302 ~~iy~~d~~~~~~~~l-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~-----~~~p~~sp 374 (417)
T TIGR02800 302 PQIYMMDADGGEVRRL-TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG-L-----DESPSFAP 374 (417)
T ss_pred ceEEEEECCCCCEEEe-ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC-C-----CCCceECC
Confidence 577778888775443 33455677889999999999887 65 7889998743334444322 1 34578999
Q ss_pred CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 376 DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 376 DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
||+.|+..+.+ +....+.+.+ .+|+....+..+
T Consensus 375 dg~~l~~~~~~--------~~~~~l~~~~-~~g~~~~~~~~~ 407 (417)
T TIGR02800 375 NGRMILYATTR--------GGRGVLGLVS-TDGRFRARLPLG 407 (417)
T ss_pred CCCEEEEEEeC--------CCcEEEEEEE-CCCceeeECCCC
Confidence 99999988862 1123466666 347777666544
No 196
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=5.1e-12 Score=130.94 Aligned_cols=210 Identities=14% Similarity=0.104 Sum_probs=138.7
Q ss_pred CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEc-CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 214 DSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTK-ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss-~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
...|.++|...+. ...+. ...+...+|||++..+++.. .+....|.+||+++|+.... ..+...+..++|+ |++
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~s-pDg 245 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFS-PDG 245 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEEC-CCC
Confidence 3456777775443 33332 34699999998666555543 33336899999999876443 2333456678886 778
Q ss_pred CEEEEE-eCC--CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--cEEEEeCCCcEEEEeecCCCCC
Q 011452 291 EKLLVK-QEN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWH 363 (485)
Q Consensus 291 ~~lls~-s~D--~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--TIklWd~~G~ll~tl~gH~~~~ 363 (485)
..|+.. +.+ ..|.+||+.+++..+.. .|........|+|||+.|+..+ ++ .|-+||+.+.....+..+...
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~- 323 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY- 323 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC-
Confidence 888764 444 46889999988765544 4444455678999999887665 33 577778764434455544433
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccc
Q 011452 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHS 443 (485)
Q Consensus 364 ~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (485)
+..++|||||++|+..+.+ +.-..|.+||+.+++. ..+..+.
T Consensus 324 ----~~~~~~spdg~~i~~~~~~--------~~~~~i~~~d~~~~~~-~~l~~~~------------------------- 365 (417)
T TIGR02800 324 ----NASPSWSPDGDLIAFVHRE--------GGGFNIAVMDLDGGGE-RVLTDTG------------------------- 365 (417)
T ss_pred ----ccCeEECCCCCEEEEEEcc--------CCceEEEEEeCCCCCe-EEccCCC-------------------------
Confidence 5688999999999998761 1113799999988654 3343322
Q ss_pred cccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 444 HASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 444 ~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
.....+|+|||+.|+.++.++..
T Consensus 366 --------------~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 366 --------------LDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred --------------CCCCceECCCCCEEEEEEeCCCc
Confidence 12346899999998888776543
No 197
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.8e-13 Score=139.95 Aligned_cols=188 Identities=15% Similarity=0.232 Sum_probs=138.8
Q ss_pred eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe
Q 011452 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl 273 (485)
..|+|+ .||..||+++.|+++|||++.+-+.+... +...|.++.|||+++++++-+.+ ..+||++++|-+++++
T Consensus 148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d---~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD---SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC---ceEEEEeccCchhhhc
Confidence 489998 79999999999999999997765544444 24689999999999888776543 8999999999888777
Q ss_pred ecC-Ccc-eeEEEEEecCC---CEEEEE-e-CCCcEEEEECCC--C----eeEEecccCCCceEEEEEcCCCcEEEEEe-
Q 011452 274 NHL-LHR-NKKVDFIEQFN---EKLLVK-Q-ENENLQILDVRN--F----ELTEVSRTEFMTPSAFIFLYENQLFLTFR- 339 (485)
Q Consensus 274 ~~~-~~~-~~~V~f~~~~~---~~lls~-s-~D~tIkIWDv~t--g----~~~~~l~gh~~~v~avaFspdg~llaS~s- 339 (485)
... ... ...+.|+ .++ ..++++ . .-+-|++||+.. + +..+.+.. +..+++++.|+||+++|-|+
T Consensus 224 t~~~k~~~~~~cRF~-~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFS-VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred CCcccchhhhhceec-ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEEEEecc
Confidence 621 111 2377786 333 233333 3 556777766542 2 22233333 34899999999999999999
Q ss_pred CCcEEEEeCC-CcEEE-EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 340 NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 340 D~TIklWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
||.|.|.+.. -++++ .=+.|... |..|.|+||-+++++-|. |.++.|--+
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~-----VT~ltF~Pdsr~~~svSs-----------~~~~~v~~l 353 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGF-----VTGLTFSPDSRYLASVSS-----------DNEAAVTKL 353 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheee-----eeeEEEcCCcCccccccc-----------CCceeEEEE
Confidence 9999999995 55544 45678776 999999999999999776 566666544
No 198
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.1e-11 Score=132.21 Aligned_cols=235 Identities=12% Similarity=0.086 Sum_probs=151.0
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
.+.++|.+ |...+.+.. ..+.+.+..|||||+.|+.++... .. ..+.++++..|+.. .+... ....
T Consensus 199 ~l~i~d~d-G~~~~~l~~-~~~~~~~p~wSPDG~~La~~s~~~-g~------~~L~~~dl~tg~~~---~lt~~--~g~~ 264 (448)
T PRK04792 199 QLMIADYD-GYNEQMLLR-SPEPLMSPAWSPDGRKLAYVSFEN-RK------AEIFVQDIYTQVRE---KVTSF--PGIN 264 (448)
T ss_pred EEEEEeCC-CCCceEeec-CCCcccCceECCCCCEEEEEEecC-CC------cEEEEEECCCCCeE---EecCC--CCCc
Confidence 55666765 544455544 456789999999999999877432 12 36777888777651 22221 1223
Q ss_pred eEEEEeCCCCeEEEEe-eCCCc--EEEeecCCCeEEEEE-cCCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEE
Q 011452 196 GFVEFDDVNGKVLTYS-AQDSI--YKVFDLKNYTMLYSI-SDKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~-s~D~t--iKlWdl~~g~~l~tl-~~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L 270 (485)
...+|+ |||+.|+.. +.++. |.+||+++++..... ....+.+.+|||++. ++.++..+....|.++|+++|+..
T Consensus 265 ~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFS-PDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeEC-CCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 467898 799988764 55665 777788887643222 223567899998665 444433334457788899888764
Q ss_pred E-EeecCCcceeEEEEEecCCCEEEEEe-CCCcEEE--EECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--c
Q 011452 271 K-SFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQI--LDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 342 (485)
Q Consensus 271 ~-tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkI--WDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--T 342 (485)
+ ++.+ ......+|+ |++++|+..+ .++..+| +|+.+++......+. ......|+|||+.|+-.+ ++ .
T Consensus 344 ~Lt~~g--~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 344 RLTFEG--EQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR--LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred EEecCC--CCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC--CCCCceECCCCCEEEEEEecCCceE
Confidence 4 2333 334456775 7888888765 4554444 688888765433322 223457999999988766 43 3
Q ss_pred EEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 343 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 343 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
+.+++.+|+..+.+..+... +...+|||
T Consensus 419 l~~~~~~G~~~~~l~~~~g~-----~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSIDGRFKARLPAGQGE-----VKSPAWSP 446 (448)
T ss_pred EEEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 66778889888888765443 56677776
No 199
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=4.1e-13 Score=138.72 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=143.7
Q ss_pred EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec
Q 011452 237 QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS 316 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l 316 (485)
..|||++++.++++.. .|+++|+|+...-+.+..+..|...|..++|+ ||++.|++-+.| ..+|||+++|.+++..
T Consensus 148 k~vaf~~~gs~latgg--~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG--TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeecc--ccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 6799997655555533 45999999987777777777777899999997 677777777888 9999999999887776
Q ss_pred cc--CCCceEEEEEcCCC-----cEEEEEe-CCcEEEEeCC---C----cEEEEeecCCCCCCCCCeeEEEECCCCCEEE
Q 011452 317 RT--EFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFR---G----ELVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 317 ~g--h~~~v~avaFspdg-----~llaS~s-D~TIklWd~~---G----~ll~tl~gH~~~~~~~~v~svafSpDG~~La 381 (485)
.. -.-...++.|+-|+ .++++-. -+.|.+|++. | ++-+-+..|. .+.+++.|+||+++|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~------siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK------SISSLAVSDDGKFLA 297 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC------cceeEEEcCCCcEEE
Confidence 42 22245556799888 4444444 5577777752 3 3333333442 289999999999999
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeE
Q 011452 382 SYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDIT 460 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 460 (485)
-|+. ||.|-|.+..+=|+++-++. |. ..|+
T Consensus 298 lGT~-----------dGsVai~~~~~lq~~~~vk~aH~--------------------------------------~~VT 328 (398)
T KOG0771|consen 298 LGTM-----------DGSVAIYDAKSLQRLQYVKEAHL--------------------------------------GFVT 328 (398)
T ss_pred Eecc-----------CCcEEEEEeceeeeeEeehhhhe--------------------------------------eeee
Confidence 9997 79999999988888877643 43 3899
Q ss_pred EEEEcCCCCEEEEecCCCcEEEc
Q 011452 461 ALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 461 sl~fspDg~~LaSgs~DgtVklW 483 (485)
+|.|+||.+.+++-|.|.+++|-
T Consensus 329 ~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 329 GLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred eEEEcCCcCcccccccCCceeEE
Confidence 99999999999999999988763
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.49 E-value=2.7e-13 Score=145.53 Aligned_cols=222 Identities=14% Similarity=0.149 Sum_probs=161.5
Q ss_pred eCCCcEEEeecC-CCeE----EEEE-cCCcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCe-------EEEEeecC
Q 011452 212 AQDSIYKVFDLK-NYTM----LYSI-SDKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGT-------VLKSFNHL 276 (485)
Q Consensus 212 s~D~tiKlWdl~-~g~~----l~tl-~~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~-------~L~tl~~~ 276 (485)
+.-|.|-|++|. .|++ +-+| .+..|.++.+.| +.+|+++ .+|+.|+||.++.+- .-+.|+.|
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa---~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h 676 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVA---TDDGQINLWRLTANGLPENEMTPEKILTIH 676 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeec---ccCceEEEEEeccCCCCcccCCcceeeecc
Confidence 446889999986 3543 2222 356899999997 7777776 345899999998653 34678899
Q ss_pred CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc-EE
Q 011452 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE-LV 353 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~-ll 353 (485)
...+.++.|.+.--+-|+++++|-||+|||++++.....+.||++.|..+||||||+++||-+ |++|++++-+ ++ .+
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 999999999877677888899999999999999999999999999999999999999999999 9999999986 44 34
Q ss_pred EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC--CeEEEEecCCCCCCCCcccccCCC
Q 011452 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT--GKCLAKIRASNGLPAENECSCSGD 431 (485)
Q Consensus 354 ~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T--Gk~l~tl~gH~~~~~~~~~~~~~~ 431 (485)
+ +|...- ...---|.|-=||.+|+..+.| .++...|-++|.++ +..|.+..-... |
T Consensus 757 ~--Eg~gpv--gtRgARi~wacdgr~viv~Gfd-------k~SeRQv~~Y~Aq~l~~~pl~t~~lDva-p---------- 814 (1012)
T KOG1445|consen 757 Y--EGKGPV--GTRGARILWACDGRIVIVVGFD-------KSSERQVQMYDAQTLDLRPLYTQVLDVA-P---------- 814 (1012)
T ss_pred c--cCCCCc--cCcceeEEEEecCcEEEEeccc-------ccchhhhhhhhhhhccCCcceeeeeccc-C----------
Confidence 3 333211 0112346777799999988873 33346688888654 233333321100 0
Q ss_pred CCCCCccccccccccccccchhcccCCeEEEEEcCCCCE-EEEecCCCcEEEcc
Q 011452 432 YSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNE-IYTGNRHGLVHVWS 484 (485)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~-LaSgs~DgtVklWd 484 (485)
.+.--.|++|... ++||-.|.+|.++.
T Consensus 815 --------------------------s~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 815 --------------------------SPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred --------------------------ccccccccCCCceEEEecCCCceEEEEE
Confidence 1111367888775 67888899988764
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=2.4e-11 Score=134.53 Aligned_cols=317 Identities=11% Similarity=0.123 Sum_probs=205.0
Q ss_pred EEEEeCCCeEEeeecccCcE---EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC-Cc-Cc
Q 011452 108 VFALAQSGVCAAFCRETNQR---ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG-KP-DA 182 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~---l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G-~~-~~ 182 (485)
++..-++-.+-+|+..++.. .+-....|...+.++++||++..+|++-. | +.+.+|. .-| +- ..
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~----d------GrI~vw~-d~~~~~~~~ 242 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS----D------GRILVWR-DFGSSDDSE 242 (792)
T ss_pred EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc----C------CcEEEEe-ccccccccc
Confidence 44555556666777765441 11123346666899999999999887442 2 3588997 344 11 12
Q ss_pred ccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
...+|.- |-..+..++|+ +||.+|.||++.+..-+|.+.+++ ..-|+ +..|..+.+||++.+.+-.- .|+.|.
T Consensus 243 t~t~lHW-H~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~--~DNqI~ 317 (792)
T KOG1963|consen 243 TCTLLHW-HHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL--EDNQIH 317 (792)
T ss_pred cceEEEe-cccccceeEEe-cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe--cCceEE
Confidence 2233332 22346689998 799999999999999999999988 22233 67999999998776654433 357888
Q ss_pred EEecCCCeEEEEeecCCcc-----------eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc-----------c
Q 011452 261 ILSIEDGTVLKSFNHLLHR-----------NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR-----------T 318 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~-----------~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~-----------g 318 (485)
|....+-+...+..|.... ...+.+. |....++--+.-++||++|+.+-+.+.-+. -
T Consensus 318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred EEeccchhhhhhccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 8887666666666554332 2244443 445677778899999999999876543321 1
Q ss_pred CCCceEEEEEcCCCcEEEEEe---------CC--cEEEEeCCCc-----EEEEeecCCCCCCCCCeeEEEECCCCC-EEE
Q 011452 319 EFMTPSAFIFLYENQLFLTFR---------NR--TVAVWNFRGE-----LVTSFEDHLLWHPDCNTNNIYITSDQD-LII 381 (485)
Q Consensus 319 h~~~v~avaFspdg~llaS~s---------D~--TIklWd~~G~-----ll~tl~gH~~~~~~~~v~svafSpDG~-~La 381 (485)
+...+.+++++-.|+.++|.- |+ .+|.|-..+. |.+.. ..+|.++.|-.+.++|-.. ..+
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I---~~PH~~~~vat~~~~~~rs~~~v 473 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI---NNPHGNAFVATIFLNPTRSVRCV 473 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE---ecCCCceeEEEEEecCcccceeE
Confidence 334678888888899999863 22 5788987533 23333 2345556566666666555 788
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEE
Q 011452 382 SYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITA 461 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 461 (485)
+++. ||.+|||-+..-+.+. .|.. .-.|..- -.|+-..+++
T Consensus 474 ta~~-----------dg~~KiW~~~~~~n~~---k~~s--------------~W~c~~i-----------~sy~k~~i~a 514 (792)
T KOG1963|consen 474 TASV-----------DGDFKIWVFTDDSNIY---KKSS--------------NWTCKAI-----------GSYHKTPITA 514 (792)
T ss_pred Eecc-----------CCeEEEEEEecccccC---cCcc--------------ceEEeee-----------eccccCcccc
Confidence 8876 7999999864322211 1110 0111111 0122238899
Q ss_pred EEEcCCCCEEEEecCCCcEEEcc
Q 011452 462 LFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 462 l~fspDg~~LaSgs~DgtVklWd 484 (485)
++||.||. |.+.|.|++|-+||
T Consensus 515 ~~fs~dGs-lla~s~~~~Itiwd 536 (792)
T KOG1963|consen 515 LCFSQDGS-LLAVSFDDTITIWD 536 (792)
T ss_pred hhhcCCCc-EEEEecCCEEEEec
Confidence 99999995 66677899999998
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.9e-11 Score=118.72 Aligned_cols=195 Identities=12% Similarity=0.183 Sum_probs=133.4
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE------EEEE---------cCCcEEEEEEcC-CceEEEEEcCC
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM------LYSI---------SDKNVQEIKISP-GIMLLIFTKAS 254 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~------l~tl---------~~~~V~~VafSp-g~~ll~sss~~ 254 (485)
|-+.+..++|. | ..|.||+ ||.||=|-...... +..+ .--.|+++-.-| .+.++.++
T Consensus 61 hdgpiy~~~f~--d-~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag--- 133 (325)
T KOG0649|consen 61 HDGPIYYLAFH--D-DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG--- 133 (325)
T ss_pred cCCCeeeeeee--h-hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec---
Confidence 33445567774 2 3555554 57777666542221 1111 112577777776 33444332
Q ss_pred CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc---------C-CCceE
Q 011452 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT---------E-FMTPS 324 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g---------h-~~~v~ 324 (485)
+|..+.-||+|+|+..++|+||++.+-+|.-- ..++++++|++|||+||||.+|+++.+++.. | ..+|-
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCcceeeeeeec-ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 56899999999999999999999999999863 3478999999999999999999999887632 2 23555
Q ss_pred EEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEe--ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE
Q 011452 325 AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN 401 (485)
Q Consensus 325 avaFspdg~llaS~sD~TIklWd~~-G~ll~tl--~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk 401 (485)
+++- +...|+.|......||+++ -++..+| .+| |.-+.|-. +.+++++. -+-|+
T Consensus 213 ala~--~edWlvCGgGp~lslwhLrsse~t~vfpipa~--------v~~v~F~~--d~vl~~G~-----------g~~v~ 269 (325)
T KOG0649|consen 213 ALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIPAR--------VHLVDFVD--DCVLIGGE-----------GNHVQ 269 (325)
T ss_pred EEec--cCceEEecCCCceeEEeccCCCceEEEecccc--------eeEeeeec--ceEEEecc-----------cccee
Confidence 5544 5567888777788999996 6766655 455 66777744 46677664 36788
Q ss_pred EEeCCCCeEEEEecCC
Q 011452 402 ISNILTGKCLAKIRAS 417 (485)
Q Consensus 402 lWdl~TGk~l~tl~gH 417 (485)
-|.+. |..-+.++.-
T Consensus 270 ~~~l~-Gvl~a~ip~~ 284 (325)
T KOG0649|consen 270 SYTLN-GVLQANIPVE 284 (325)
T ss_pred eeeec-cEEEEeccCC
Confidence 89864 7777766653
No 203
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=7.3e-11 Score=137.87 Aligned_cols=253 Identities=14% Similarity=0.184 Sum_probs=168.8
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----------------CcEEEEEEcC-CceEEEEEcC
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----------------KNVQEIKISP-GIMLLIFTKA 253 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----------------~~V~~VafSp-g~~ll~sss~ 253 (485)
.+..|..|++++.+|.+.++.+..+.|++||+. |+.+..+.. +.-+.|+|.+ ++.+.++...
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 356788899986678899999999999999975 555444421 1247899997 5566666433
Q ss_pred CCCeeEEEEecCCCeEEEEeecC-----------------CcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEe
Q 011452 254 SGHVPLKILSIEDGTVLKSFNHL-----------------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEV 315 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~~~-----------------~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~ 315 (485)
...|+.+|..+|. +.+|.+- ...-+.|+|. ++++.+.++ ..++.|++||..++.....
T Consensus 645 --n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 645 --NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred --CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 2689999998765 5555321 1122478886 555666665 6899999999998865432
Q ss_pred c--------c------cCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCC-CcEEEEeec--------------CCCCC-
Q 011452 316 S--------R------TEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GELVTSFED--------------HLLWH- 363 (485)
Q Consensus 316 l--------~------gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~-G~ll~tl~g--------------H~~~~- 363 (485)
. . .....++.++|+|||+ ++++-+ +++|++||++ |+.. .+.+ +....
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccccCcccccccCCCCchh
Confidence 1 1 1234678899999998 666667 8999999996 5421 1111 00000
Q ss_pred --CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccc
Q 011452 364 --PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 364 --~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 441 (485)
....-.+|+|+|||++.++-+. +++|++||..++++. ++.+... +...++.
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~-----------N~rIrviD~~tg~v~-tiaG~G~------~G~~dG~--------- 852 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSY-----------NHKIKKLDPATKRVT-TLAGTGK------AGFKDGK--------- 852 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECC-----------CCEEEEEECCCCeEE-EEeccCC------cCCCCCc---------
Confidence 0001258999999998888664 699999999888765 4444220 0001110
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..+..+.....|+++|||+.+++-+.+++|++||.
T Consensus 853 ---------~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 853 ---------ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred ---------ccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 01111235678999999999999999999999984
No 204
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=2.4e-12 Score=144.31 Aligned_cols=265 Identities=9% Similarity=0.032 Sum_probs=185.8
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
.++|.+++-. -+.+++...|..|.-+...+...++ .+.|+..+- +.+-+...+...+..++.+..
T Consensus 17 ~~~llag~gp-~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~---------~~~~v~~~~~~~v~~~~~~~~- 81 (967)
T KOG0974|consen 17 SDYLLAGSGP-EILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLL---------SGKIVTCAKSDEVYVKEASNQ- 81 (967)
T ss_pred cceeeecCCC-ceEEeeCCchhHhhhhhhhcccccc----cccccceec---------cceEEEEEeecceeecchhhh-
Confidence 3667666533 5678888888877766554444444 233322111 111122222333333333210
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-C-----cEEEEEEcCCceEEEEEcCCCCee
Q 011452 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K-----NVQEIKISPGIMLLIFTKASGHVP 258 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-~-----~V~~VafSpg~~ll~sss~~~D~t 258 (485)
+...-..|+..-.+.. +.+.++....++.+-+||.+.+.++..+.. . ...-+-+|+....+.+++.. +.
T Consensus 82 --~~~~~s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~--~~ 156 (967)
T KOG0974|consen 82 --IIERFSDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF--GE 156 (967)
T ss_pred --hhhhccccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc--cc
Confidence 1111224544434432 345667777789999999999887766643 2 23345666766666554443 78
Q ss_pred EEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE-ecccCCCceEEEEEcCCCcEEEE
Q 011452 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 259 IklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~-~l~gh~~~v~avaFspdg~llaS 337 (485)
|-+|+..--+.-.-+.||.+.++++.++ .++.++++.|+|.++|||++++++... +.=||..+||++.|+|. .++|
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t 233 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIIT 233 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEE
Confidence 9999986222222488999999999997 678899999999999999999998766 66699999999999999 8999
Q ss_pred Ee-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 338 FR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 338 ~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
++ |-|.++|+.+|+.+..+++|...+ ++.++..++.-.++++.. |++||+||+.+
T Consensus 234 ~gedctcrvW~~~~~~l~~y~~h~g~~----iw~~~~~~~~~~~vT~g~-----------Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGTQLEVYDEHSGKG----IWKIAVPIGVIIKVTGGN-----------DSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEecccceehhhhhhhhcc----eeEEEEcCCceEEEeecc-----------Ccchhhhhhhc
Confidence 99 999999999999999999999875 899999999999999875 89999999864
No 205
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.44 E-value=1.3e-10 Score=135.86 Aligned_cols=244 Identities=12% Similarity=0.182 Sum_probs=160.2
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc----------eeeeccccCceEEEEeCCCCe-EE
Q 011452 140 RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA----------LFESESLKWPGFVEFDDVNGK-VL 208 (485)
Q Consensus 140 ~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~----------lf~~~~~~~~~~V~Fs~pnG~-~L 208 (485)
..|++++++..|..+ |... +.|.+++. .|+...... .+....+..|..|+|+ ++|. +.
T Consensus 571 ~gvavd~~~g~lyVa--Ds~n-------~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-~~gn~LY 639 (1057)
T PLN02919 571 GKLAIDLLNNRLFIS--DSNH-------NRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-AKKNLLY 639 (1057)
T ss_pred ceEEEECCCCeEEEE--ECCC-------CeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-CCCCEEE
Confidence 468998865544432 2223 46777774 555410000 1112245668899998 5554 55
Q ss_pred EEeeCCCcEEEeecCCCeEEEEEcC-------------------CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe
Q 011452 209 TYSAQDSIYKVFDLKNYTMLYSISD-------------------KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g~~l~tl~~-------------------~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
++....+.|+++|+.++. +.++.+ +.=+.|+|+| ++.+.++.. .++.|++||..+|.
T Consensus 640 VaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 640 VADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--GQHQIWEYNISDGV 716 (1057)
T ss_pred EEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--CCCeEEEEECCCCe
Confidence 555666889999998765 333311 1235799998 777777754 34799999998886
Q ss_pred EEEEeecC---------------CcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecc---------------
Q 011452 269 VLKSFNHL---------------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSR--------------- 317 (485)
Q Consensus 269 ~L~tl~~~---------------~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~--------------- 317 (485)
.. ++.+. ...-..|+|+ ++++.|.++ +.++.|++||+.++.......
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 53 33221 1122368886 667767665 688999999999875321110
Q ss_pred ------cCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCC--C-------CCCCCeeEEEECCCCCEEE
Q 011452 318 ------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL--W-------HPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 318 ------gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~--~-------~~~~~v~svafSpDG~~La 381 (485)
.....+..++|+|+|+++++-+ +++|++||.++..+.++.+... . ........|+++|||++++
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 1233578999999999999998 9999999997555555554221 0 0001256899999999888
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 382 SYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
+-+. +++|++||+.+++.
T Consensus 875 aDt~-----------Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 875 ADTN-----------NSLIRYLDLNKGEA 892 (1057)
T ss_pred EECC-----------CCEEEEEECCCCcc
Confidence 8654 69999999999875
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.44 E-value=1.9e-10 Score=117.85 Aligned_cols=183 Identities=12% Similarity=0.189 Sum_probs=141.9
Q ss_pred eEEEEeeCCC--cEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC-Cccee
Q 011452 206 KVLTYSAQDS--IYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL-LHRNK 281 (485)
Q Consensus 206 ~~Las~s~D~--tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~-~~~~~ 281 (485)
.++|-.+.+. ..|+-+.+.+..+-.+. ...|.+|++.-+.+++.- . ..|.|.||.+=++|+|+..- .+...
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~L--e---e~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCL--E---ESIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEE--c---ccEEEEecccceeehhhhccCCCccc
Confidence 4555555444 49999998777554443 468999999977666544 2 35999999999999999743 12223
Q ss_pred EEEEEecC-CCEEEE-Ee-CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC-cEEEEeCC-CcEEEE
Q 011452 282 KVDFIEQF-NEKLLV-KQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFR-GELVTS 355 (485)
Q Consensus 282 ~V~f~~~~-~~~lls-~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~-TIklWd~~-G~ll~t 355 (485)
-.||++.. +-+|+- ++ .-|.|.|||+.+-+...++..|...+-+++|+|+|.+|||+| .| -|||..+. |+.++.
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 55665322 336666 34 679999999999999999999999999999999999999999 55 57999994 999999
Q ss_pred eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 356 l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
|.--.. .+++.+++|+||+++|++.|. -+||.|+.+.+
T Consensus 212 FRRG~~---~~~IySL~Fs~ds~~L~~sS~-----------TeTVHiFKL~~ 249 (391)
T KOG2110|consen 212 FRRGTY---PVSIYSLSFSPDSQFLAASSN-----------TETVHIFKLEK 249 (391)
T ss_pred eeCCce---eeEEEEEEECCCCCeEEEecC-----------CCeEEEEEecc
Confidence 975443 366999999999999998875 69999998864
No 207
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=4.4e-11 Score=127.04 Aligned_cols=215 Identities=11% Similarity=0.009 Sum_probs=134.7
Q ss_pred cEEEeecCCCeEEE-EEcCCcEEEEEEcCCce---EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC
Q 011452 216 IYKVFDLKNYTMLY-SISDKNVQEIKISPGIM---LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 216 tiKlWdl~~g~~l~-tl~~~~V~~VafSpg~~---ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
.|-+.|...++... |-....+.+-+|||++. ++..+..++...|.+.++.+|+..+ +....+.....+|+ |||.
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wS-PDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFS-PRKK 243 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEEC-CCCC
Confidence 45555655554322 22234567889999764 2222333333568888998886533 22233455677886 7888
Q ss_pred EEEEEe-C----CCcEEEEECCC---CeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeC--C--CcEEEEee
Q 011452 292 KLLVKQ-E----NENLQILDVRN---FELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--R--GELVTSFE 357 (485)
Q Consensus 292 ~lls~s-~----D~tIkIWDv~t---g~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~--~--G~ll~tl~ 357 (485)
+|+..+ . |-.+.+||+.+ ++..+...++.....+.+|||||+.|+..+ ++..+||.+ + |...+.++
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 988764 2 34566688876 344555544444556789999999888665 677777754 3 34455555
Q ss_pred cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 358 DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
.+... +....|||||++|+..+.. .....|.+||+.+|++.. |....
T Consensus 324 ~~~~~-----~~~p~wSPDG~~Laf~~~~--------~g~~~I~v~dl~~g~~~~-Lt~~~------------------- 370 (428)
T PRK01029 324 KKYRN-----SSCPAWSPDGKKIAFCSVI--------KGVRQICVYDLATGRDYQ-LTTSP------------------- 370 (428)
T ss_pred cCCCC-----ccceeECCCCCEEEEEEcC--------CCCcEEEEEECCCCCeEE-ccCCC-------------------
Confidence 54433 5678999999999987651 113579999999988643 43222
Q ss_pred cccccccccccccchhcccCCeEEEEEcCCCCEEE-EecCC--CcEEEcc
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY-TGNRH--GLVHVWS 484 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La-Sgs~D--gtVklWd 484 (485)
..+.+..|+|||+.|+ ++..+ ..|.+||
T Consensus 371 -------------------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 371 -------------------ENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred -------------------CCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 1445689999999876 44443 3455554
No 208
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=6.4e-11 Score=124.46 Aligned_cols=204 Identities=10% Similarity=0.071 Sum_probs=135.6
Q ss_pred CceEEEEeCCCCeEEEEeeCC---CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCe
Q 011452 194 WPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D---~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~ 268 (485)
.+.+.+|+ |||+.|++.+.+ ..|.+||+.+|+...... ...+...+|||++. ++.+.+.+++..|.+||+++|+
T Consensus 200 ~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 200 PILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred ceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 34578898 799999988754 368899999887533222 23456799998664 5545444445678999999887
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEe-CC--CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR-- 341 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D--~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~-- 341 (485)
.. .+..+........|+ |++.+|+..+ .+ ..|.++|+.+++..+.... .......+|+|||+.|+-.+ ++
T Consensus 279 ~~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 279 LS-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred eE-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCce
Confidence 54 455444455577886 7888888775 33 3577778888886554321 12234567999999998776 33
Q ss_pred cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 342 TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
.|.+||+. |+. +.+.. ... ..+..|+|||+.|+-.+.. +....|.+.++. |+....|..+
T Consensus 356 ~l~~~dl~tg~~-~~lt~-~~~-----~~~p~~spdg~~i~~~~~~--------~g~~~l~~~~~~-g~~~~~l~~~ 416 (430)
T PRK00178 356 HVAAQDLQRGSV-RILTD-TSL-----DESPSVAPNGTMLIYATRQ--------QGRGVLMLVSIN-GRVRLPLPTA 416 (430)
T ss_pred EEEEEECCCCCE-EEccC-CCC-----CCCceECCCCCEEEEEEec--------CCceEEEEEECC-CCceEECcCC
Confidence 57888996 553 44442 212 2356899999999988751 122457788864 6666666644
No 209
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=4.8e-13 Score=139.82 Aligned_cols=197 Identities=18% Similarity=0.192 Sum_probs=167.1
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~t 272 (485)
|..+.|+ .||..|+-++.-|-+-.+|..++++...+. -..|.+|+|- ..+++|+++. ..+.|+| ..|++|+-
T Consensus 132 PY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK----~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQK----KYVYVYD-NNGTELHC 205 (545)
T ss_pred Ceeeeec-CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhh----ceEEEec-CCCcEEee
Confidence 4467887 699999999999999999999999999987 4689999998 5777777643 5889999 58999999
Q ss_pred eecCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-
Q 011452 273 FNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR- 349 (485)
Q Consensus 273 l~~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~- 349 (485)
++.| ..+..+.|.| --.||+ +++.|-++--||.+|+++..++.-.+.+....-.|-+-.+-.|- +|||.+|.-.
T Consensus 206 lk~~-~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred hhhc-Cchhhhcccc--hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 9865 6788999985 345555 57999999999999999888877777777777888888888887 9999999996
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
-+.+..+-.|... |++|||.|+|+|+|+.+. |..+||||+..-+.+.++.-
T Consensus 283 kePLvKiLcH~g~-----V~siAv~~~G~YMaTtG~-----------Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 283 KEPLVKILCHRGP-----VSSIAVDRGGRYMATTGL-----------DRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred cchHHHHHhcCCC-----cceEEECCCCcEEeeccc-----------ccceeEeeeccccccceeec
Confidence 7777777789887 999999999999999987 79999999987666666544
No 210
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=4e-11 Score=117.69 Aligned_cols=197 Identities=12% Similarity=0.043 Sum_probs=133.7
Q ss_pred EEeCCCCeEEEEeeCCCcEEEeecCC---------Ce-EEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC
Q 011452 199 EFDDVNGKVLTYSAQDSIYKVFDLKN---------YT-MLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 199 ~Fs~pnG~~Las~s~D~tiKlWdl~~---------g~-~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t 266 (485)
+.+ |-+++|+.|+.+|+|-+..++. |+ .+.+. |+..|..++|.++ .|++. +|+-|+=|-...
T Consensus 17 a~s-p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-~Lls~----gdG~V~gw~W~E 90 (325)
T KOG0649|consen 17 AIS-PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-FLLSG----GDGLVYGWEWNE 90 (325)
T ss_pred hhC-CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-heeec----cCceEEEeeehh
Confidence 455 6799999999999999999863 22 23333 4568999999954 44433 347888775432
Q ss_pred CeE---EEE---e--ecCC-----cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE-cCCC
Q 011452 267 GTV---LKS---F--NHLL-----HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF-LYEN 332 (485)
Q Consensus 267 G~~---L~t---l--~~~~-----~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF-spdg 332 (485)
-.. +|. . ..|. ..++++-.. |...-++.++.|+.+.-||+++|+..++++||++.+-+|+- +..+
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ld-P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLD-PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEec-cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 111 111 1 1111 223344443 33445555559999999999999999999999999999998 5566
Q ss_pred cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC---CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 333 QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW---HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 333 ~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~---~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
| ++||+ |||+||||.. ++++.+++--... -|+..-+--|.--|.++|++|.. ..+-||++.+
T Consensus 170 q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------------p~lslwhLrs 236 (325)
T KOG0649|consen 170 Q-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------------PKLSLWHLRS 236 (325)
T ss_pred c-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------------CceeEEeccC
Confidence 6 67888 9999999995 9999988743221 11111122344456669999874 5688999988
Q ss_pred CeEEEEec
Q 011452 408 GKCLAKIR 415 (485)
Q Consensus 408 Gk~l~tl~ 415 (485)
-+|..+|.
T Consensus 237 se~t~vfp 244 (325)
T KOG0649|consen 237 SESTCVFP 244 (325)
T ss_pred CCceEEEe
Confidence 77766654
No 211
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.42 E-value=1.9e-11 Score=116.77 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=112.9
Q ss_pred cCEEEEEeC----------CCeEEeeec-ccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 105 RDIVFALAQ----------SGVCAAFCR-ETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 105 ~~~ias~s~----------dgtiklW~~-~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
|++|+.... -|...||.+ ..+..+..+.-..++.|.+++|||+|+.+|.+. |..+ ..+.||
T Consensus 17 G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~--g~~~------~~v~ly 88 (194)
T PF08662_consen 17 GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY--GSMP------AKVTLY 88 (194)
T ss_pred CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE--ccCC------cccEEE
Confidence 666666555 234556655 335666667654556799999999999988754 3334 589999
Q ss_pred EeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC---CcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEE
Q 011452 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIF 250 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D---~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~s 250 (485)
+++ ++. ++... ......|.|+ |+|++|+.++.+ |.+.+||+.+.+.+.+.....+..++|||+|+.+++
T Consensus 89 d~~-~~~-----i~~~~-~~~~n~i~ws-P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKK-----IFSFG-TQPRNTISWS-PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccE-----eEeec-CCCceEEEEC-CCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEE
Confidence 974 554 34432 2345689998 899999998754 569999999999999988778899999997777776
Q ss_pred EcCC----CCeeEEEEecCCCeEEEEee
Q 011452 251 TKAS----GHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 251 ss~~----~D~tIklWdi~tG~~L~tl~ 274 (485)
+... .|..++||+. +|+++....
T Consensus 161 a~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred EEeccceeccccEEEEEe-cCeEeEecc
Confidence 6543 4789999998 688887654
No 212
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.42 E-value=6.9e-12 Score=134.90 Aligned_cols=196 Identities=14% Similarity=0.147 Sum_probs=146.8
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EE----EEEc--CCcEEEEEEcC--CceEEEEEcCCCCeeEEEEec
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--ML----YSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l----~tl~--~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi 264 (485)
+..+.|++-+..+||+||+|.+||||.+..|- .| ..+. +-.|.++.|+| ++.+++++. ++++|||+
T Consensus 82 VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~----g~v~i~D~ 157 (1012)
T KOG1445|consen 82 VTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH----GSVYITDI 157 (1012)
T ss_pred eeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC----ceEEEEEc
Confidence 34556665566799999999999999997443 22 1111 12578899997 887776532 69999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCC-ceEEEEEcCCCcEEEEEe-C-
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFM-TPSAFIFLYENQLFLTFR-N- 340 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~-~v~avaFspdg~llaS~s-D- 340 (485)
.+++.+..+.+|..-+.+..|++ ||..|++++.|+.|+|+|.+. ++.+++..+|.+ .=..|+|.-+-..|+|.+ +
T Consensus 158 stqk~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~ 236 (1012)
T KOG1445|consen 158 STQKTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTT 236 (1012)
T ss_pred ccCceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccch
Confidence 99999999999999999999975 555555567999999999985 688999999975 444577776666777665 4
Q ss_pred ---CcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 341 ---RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 341 ---~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
+.|++||.+ |..++||+=...- + |.-=-|.||-.+|+-+++. +.+|.+..+...+
T Consensus 237 ~R~reV~~~Dtr~f~~p~~tleld~st---G-vLiPl~DpDt~llfLaGKG----------~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 237 KRIREVRAYDTRKFGAPVHTLELDSST---G-VLIPLYDPDTRLLFLAGKG----------TNKLFMLEMQDRQ 296 (1012)
T ss_pred hhheeeeeeeccccCCcceeEEeeccc---c-eEeeeecCCCceEEEecCC----------cceEEEEEecCCC
Confidence 589999995 8888888743321 1 4445678999999988872 5778887776443
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=2.8e-11 Score=135.94 Aligned_cols=276 Identities=11% Similarity=0.112 Sum_probs=187.3
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecC--CcccEEEEEE-eeCC-CEEEEEEeecCCCCcccceeEEEEeEe-cc--
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVT--ADEVIRSLFY-NKNN-DSLITVSVYASDNFSSLRCRSTRIEYI-RR-- 177 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~--~~~~i~sv~~-spdg-~~Las~S~d~~~d~stL~~~t~~lw~i-~~-- 177 (485)
...|+++...-+|++||-+.|+++..+..+ ....|..+-| |-+. .+|.++| .| +.||||.- ..
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas----~d------GvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS----SD------GVIRIWKDYADKW 1145 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec----cC------ceEEEeccccccc
Confidence 788888888889999999888876644221 2235666666 4443 4566666 34 59999964 22
Q ss_pred CCcCcccceeee--cc----ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC---CcEEEEEEc-C-Cce
Q 011452 178 GKPDAGFALFES--ES----LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKIS-P-GIM 246 (485)
Q Consensus 178 G~~~~~~~lf~~--~~----~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~---~~V~~VafS-p-g~~ 246 (485)
+++.- ..-|.. +. .+----+++--.+|.++++|. =+.|||||+..-+++..+.- .-|.++.=+ + |++
T Consensus 1146 ~~~eL-VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1146 KKPEL-VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred CCcee-EEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 22200 001111 00 000012455445677776654 79999999998888887752 356666555 3 567
Q ss_pred EEEEEcCCCCeeEEEEecCCCe---EEEEeecCCcc--eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec--ccC
Q 011452 247 LLIFTKASGHVPLKILSIEDGT---VLKSFNHLLHR--NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS--RTE 319 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~---~L~tl~~~~~~--~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~gh 319 (485)
++++- .|+.|+++|...-. .+...+.|+.. |..+.+-+..-+.|++++.||.|++||++.......+ ..|
T Consensus 1224 i~AGf---aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1224 IAAGF---ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred EEEee---cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 66653 45899999975432 34566777777 7778876544457999999999999999975322222 222
Q ss_pred C--C-ceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecCCCC--CCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 320 F--M-TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 320 ~--~-~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH~~~--~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
- + ..+++...++..++|||+-+.||||++.|+.+..+.-+... +.-+.+..++|.|-.-+||.|+.
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~--------- 1371 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA--------- 1371 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC---------
Confidence 2 3 48889899999999999989999999999998887755432 22234789999999999999875
Q ss_pred CCCCeEEEEeCC
Q 011452 395 GNAGSINISNIL 406 (485)
Q Consensus 395 ~~DgtIklWdl~ 406 (485)
|.+|.|+...
T Consensus 1372 --Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1372 --DSTVSIYSCE 1381 (1387)
T ss_pred --CceEEEeecC
Confidence 7999998754
No 214
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4.1e-10 Score=120.25 Aligned_cols=317 Identities=15% Similarity=0.230 Sum_probs=212.2
Q ss_pred eEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec
Q 011452 98 IIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR 176 (485)
Q Consensus 98 V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~ 176 (485)
+...+++ +-.+++.+.++.+++++..++..+.+... . -++.+-|||-|.+|.+==..+..+=.+-..--+++|++.
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL--K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc--c-eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 4455566 67788999999999999998854444444 2 589999999999986611000000001112345578887
Q ss_pred cCCcCcccceeeec-cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEcCCcEEEEEEcCC---ceEEEEE
Q 011452 177 RGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKNVQEIKISPG---IMLLIFT 251 (485)
Q Consensus 177 ~G~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~~~~V~~VafSpg---~~ll~ss 251 (485)
+|.... -++.- .-+| ...|+ +|..+.|-- .-+.+.++++.+-+ ....|+...|...++||+ -.+|++-
T Consensus 114 t~~~~s---~~q~k~Q~~W--~~qfs-~dEsl~arl-v~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 114 TGVQRS---QIQKKMQNGW--VPQFS-IDESLAARL-VSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV 186 (566)
T ss_pred cceehh---heehhhhcCc--ccccc-cchhhhhhh-hcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc
Confidence 765522 12211 1234 67787 454332222 25689999988754 456677788999999987 4566664
Q ss_pred cCCC--CeeEEEEecCCCeEE-----EEeecCCcceeEEEE--EecCCCEEEEEe--CC---------CcEEEEECCCCe
Q 011452 252 KASG--HVPLKILSIEDGTVL-----KSFNHLLHRNKKVDF--IEQFNEKLLVKQ--EN---------ENLQILDVRNFE 311 (485)
Q Consensus 252 s~~~--D~tIklWdi~tG~~L-----~tl~~~~~~~~~V~f--~~~~~~~lls~s--~D---------~tIkIWDv~tg~ 311 (485)
.+.. -..+|||...-+..- ++|- .-.+|.| .......|+..+ -| .++.+.+++...
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFF----kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQHQPVANKSFF----KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred cCCCCCCcEEEEeccccccccchhhhcccc----ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 4432 357899987522221 2221 0113443 222123333333 34 589999999555
Q ss_pred eEEecccCCCceEEEEEcCCCcEEEEEe---CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCC
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~llaS~s---D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~ 388 (485)
+.-.|. -.+.|.+|.|+|.|+-|+..- =-+|.|+|++|..+..|-. .. =|.++|+|.|.+|+-++.
T Consensus 263 ~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--gp-----RN~~~fnp~g~ii~lAGF--- 331 (566)
T KOG2315|consen 263 VSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--GP-----RNTAFFNPHGNIILLAGF--- 331 (566)
T ss_pred EEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--CC-----ccceEECCCCCEEEEeec---
Confidence 555554 456999999999998888764 6799999999999998842 22 488999999999999997
Q ss_pred CCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 389 DDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
+ ---|.|-+||+.+-|||.++.+-. -+-..|+|||
T Consensus 332 -G----NL~G~mEvwDv~n~K~i~~~~a~~----------------------------------------tt~~eW~PdG 366 (566)
T KOG2315|consen 332 -G----NLPGDMEVWDVPNRKLIAKFKAAN----------------------------------------TTVFEWSPDG 366 (566)
T ss_pred -C----CCCCceEEEeccchhhccccccCC----------------------------------------ceEEEEcCCC
Confidence 2 235889999999999999998743 2347999999
Q ss_pred CEEEEec------CCCcEEEcc
Q 011452 469 NEIYTGN------RHGLVHVWS 484 (485)
Q Consensus 469 ~~LaSgs------~DgtVklWd 484 (485)
+.++|+. .|+-+|||+
T Consensus 367 e~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 367 EYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred cEEEEEeccccEEecCCeEEEE
Confidence 9999997 489999996
No 215
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.41 E-value=7.7e-11 Score=128.75 Aligned_cols=255 Identities=10% Similarity=0.071 Sum_probs=177.5
Q ss_pred EEEEeEeccC-CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--EEEE------cCCcEEEE
Q 011452 169 STRIEYIRRG-KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSI------SDKNVQEI 239 (485)
Q Consensus 169 t~~lw~i~~G-~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l~tl------~~~~V~~V 239 (485)
.+-||+++.- ++ ...|.. ..-+..++|.+-+..+||.|..+|.|-+||+..+.. ...+ |...|..|
T Consensus 223 ~~~vW~~~~p~~P---e~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 223 VLLVWSLKNPNTP---ELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred eEEEEecCCCCCc---eEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 5778887544 22 123332 334557899988899999999999999999987664 2222 23467776
Q ss_pred EEc--C-CceEEEEEcCCCCeeEEEEecCCC------eEEEEee------cCCcceeEEEEEecCCCEEEEEeCCCcEEE
Q 011452 240 KIS--P-GIMLLIFTKASGHVPLKILSIEDG------TVLKSFN------HLLHRNKKVDFIEQFNEKLLVKQENENLQI 304 (485)
Q Consensus 240 afS--p-g~~ll~sss~~~D~tIklWdi~tG------~~L~tl~------~~~~~~~~V~f~~~~~~~lls~s~D~tIkI 304 (485)
.+- + +-.+++. + .|+.|+.|++..= .++-+.. .-...+..++|.+-+...+++|.++|.|--
T Consensus 298 vW~~~~~~~~f~s~-s--sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSL-S--SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEeccCCCCceEEE-e--cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 666 2 3334443 3 3689999987532 2222222 112345689998777889999999999876
Q ss_pred ---EECCCCe-----eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEE
Q 011452 305 ---LDVRNFE-----LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYI 373 (485)
Q Consensus 305 ---WDv~tg~-----~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svaf 373 (485)
++.+.+. .+.+...|.+.|+++-++|-+..+..++ |-|||||.-. -..+..++.|... |.++++
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~-----v~~vaW 449 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY-----VTDVAW 449 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce-----eeeeEE
Confidence 3444333 2446677899999999999988877776 9999999974 6678888888876 899999
Q ss_pred CCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE--EEEecCCCCCCCCcccccCCCCCCCCcccccccccccccc
Q 011452 374 TSDQD-LIISYCKADSDDPLAEGNAGSINISNILTGKC--LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRS 450 (485)
Q Consensus 374 SpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (485)
||--- .++++.. ||.|.|||+..-.+ +.+.+-+.
T Consensus 450 SptrpavF~~~d~-----------~G~l~iWDLl~~~~~Pv~s~~~~~-------------------------------- 486 (555)
T KOG1587|consen 450 SPTRPAVFATVDG-----------DGNLDIWDLLQDDEEPVLSQKVCS-------------------------------- 486 (555)
T ss_pred cCcCceEEEEEcC-----------CCceehhhhhccccCCcccccccc--------------------------------
Confidence 99764 4444433 89999999863222 11111111
Q ss_pred chhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 451 TVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 451 ~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
...+-+.++++|+.|+.|..-|+|++|++
T Consensus 487 ------~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 487 ------PALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred ------cccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 15567899999999999999999999974
No 216
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.41 E-value=1.3e-09 Score=112.45 Aligned_cols=272 Identities=15% Similarity=0.079 Sum_probs=168.7
Q ss_pred EEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC
Q 011452 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (485)
Q Consensus 102 ~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~ 181 (485)
++.++.|+.++.+|.+..+|..+|+.+-..+. ......+++. ++..++.++. + ..+..+|..+|+.
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~~p~v--~~~~v~v~~~----~------g~l~ald~~tG~~- 127 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDL-DERLSGGVGA--DGGLVFVGTE----K------GEVIALDAEDGKE- 127 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecC-CCCcccceEE--cCCEEEEEcC----C------CEEEEEECCCCcE-
Confidence 44589999999999999999999998865544 2222233333 4566665442 2 3677778788886
Q ss_pred cccceeeeccccCce-EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC-cEEE------EEEcCCceEEEEEcC
Q 011452 182 AGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQE------IKISPGIMLLIFTKA 253 (485)
Q Consensus 182 ~~~~lf~~~~~~~~~-~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~-~V~~------VafSpg~~ll~sss~ 253 (485)
+|+......+. ..... ++++++ ++.|+.+..||+++|+.+...... .... ..+. ++.+++. .
T Consensus 128 ----~W~~~~~~~~~~~p~v~--~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~-~- 197 (377)
T TIGR03300 128 ----LWRAKLSSEVLSPPLVA--NGLVVV-RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVG-F- 197 (377)
T ss_pred ----eeeeccCceeecCCEEE--CCEEEE-ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEE-C-
Confidence 55542111111 11222 455554 567999999999999988776532 2111 1222 4454443 2
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCc-------ceeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEE
Q 011452 254 SGHVPLKILSIEDGTVLKSFNHLLH-------RNKKVDFIE-QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSA 325 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~~~~~-------~~~~V~f~~-~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~a 325 (485)
.++.+.-+|+++|+.+.+...... +...+.-.+ ..++.+.+++.++.+..||.++|+.+-..... ....
T Consensus 198 -~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~ 274 (377)
T TIGR03300 198 -AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQG 274 (377)
T ss_pred -CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccC
Confidence 236899999999998876542100 000010000 13678888889999999999999876654311 1122
Q ss_pred EEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 326 FIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 326 vaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
.+. .++++++...|+.|..+|.. |+++-..+.-... + ..+..+ .|.+|+.++. +|.|.++|
T Consensus 275 p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~---~-~ssp~i--~g~~l~~~~~-----------~G~l~~~d 336 (377)
T TIGR03300 275 PAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYR---Q-LTAPAV--VGGYLVVGDF-----------EGYLHWLS 336 (377)
T ss_pred ceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCC---c-cccCEE--ECCEEEEEeC-----------CCEEEEEE
Confidence 221 24554444449999999995 9987665321111 0 222222 4667887776 79999999
Q ss_pred CCCCeEEEEecCCC
Q 011452 405 ILTGKCLAKIRASN 418 (485)
Q Consensus 405 l~TGk~l~tl~gH~ 418 (485)
..+|+.+.+++.+.
T Consensus 337 ~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 337 REDGSFVARLKTDG 350 (377)
T ss_pred CCCCCEEEEEEcCC
Confidence 99999999998664
No 217
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=9.1e-11 Score=125.21 Aligned_cols=202 Identities=10% Similarity=0.132 Sum_probs=132.9
Q ss_pred ceEEEEeCCCCeEEEEeeCCC---cEEEeecCCCeEE--EEEcCCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCe
Q 011452 195 PGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTML--YSISDKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~---tiKlWdl~~g~~l--~tl~~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~ 268 (485)
+....|+ |||+.|++.+.+. .|.+||+.+|+.. ..+. ......+|||++. ++.+.+.++...|.++|+++|+
T Consensus 220 ~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 220 LMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred ccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 4467898 8999999876532 5888899888742 2222 2345789998665 5544444444568889998887
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEe-CCCc--EEEEECCCCeeEEec-ccCCCceEEEEEcCCCcEEEEEe--CCc
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNFELTEVS-RTEFMTPSAFIFLYENQLFLTFR--NRT 342 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~t--IkIWDv~tg~~~~~l-~gh~~~v~avaFspdg~llaS~s--D~T 342 (485)
. +.+..+.......+|+ |++..|+..+ .++. |.++|+.+++..+.. .++ .....+|+|||+.|+-.+ ++.
T Consensus 298 ~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 298 L-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred e-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEecCCc
Confidence 5 4455444455678886 7888888765 3444 555688888765542 333 334568999999988765 454
Q ss_pred EEE--EeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 343 VAV--WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 343 Ikl--Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
..| +|+. |+. +.+.... . ..+..|+|||+.|+-.+.. +....|.++++ +|+....+..+.
T Consensus 374 ~~I~~~dl~~g~~-~~lt~~~-~-----d~~ps~spdG~~I~~~~~~--------~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 374 FNIARQDLETGAM-QVLTSTR-L-----DESPSVAPNGTMVIYSTTY--------QGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred eEEEEEECCCCCe-EEccCCC-C-----CCCceECCCCCEEEEEEec--------CCceEEEEEEC-CCCceEECcCCC
Confidence 444 6776 543 4444331 2 2345899999999877651 11235788886 688888887654
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.41 E-value=4.7e-11 Score=135.80 Aligned_cols=257 Identities=13% Similarity=0.112 Sum_probs=169.8
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-----C--e--EEEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEE
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----Y--T--MLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-----g--~--~l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklW 262 (485)
..+..++-+++++.+++|||.||||||||+.. + + +.|...+..|..|.+.+ +..+|++ ..|+.|++.
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~---t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS---TKDGSVRVL 1125 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE---cCCCeEEEE
Confidence 33446677778889999999999999999752 1 1 33444567899999997 5566655 356899999
Q ss_pred ecCC--CeE-----EEEeecCC--cceeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeeEEecc--cCCCceEEEEEcC
Q 011452 263 SIED--GTV-----LKSFNHLL--HRNKKVDFIEQFNE-KLLVKQENENLQILDVRNFELTEVSR--TEFMTPSAFIFLY 330 (485)
Q Consensus 263 di~t--G~~-----L~tl~~~~--~~~~~V~f~~~~~~-~lls~s~D~tIkIWDv~tg~~~~~l~--gh~~~v~avaFsp 330 (485)
++.. ++- ....+.+. .-+.--+|...... .++.+-.-+-|-+||+++..-..+++ -..+.|++++.+|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP 1205 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC
Confidence 9865 221 11111110 11112223222223 34445678899999999876544432 2345899999999
Q ss_pred CCcEEEEEe-CCcEEEEeCC-CcEEEEee-cCCCCCCCCCeeEEEE---CCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 331 ENQLFLTFR-NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYI---TSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 331 dg~llaS~s-D~TIklWd~~-G~ll~tl~-gH~~~~~~~~v~svaf---SpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
.++.++.|. -|.+-+||++ +.++.+.+ .|..+ ++-|.. .|....++|++. +.-+-|-+||
T Consensus 1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~-----i~~v~~~~~~~~~S~~vs~~~---------~~~nevs~wn 1271 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAP-----IRHVWLCPTYPQESVSVSAGS---------SSNNEVSTWN 1271 (1431)
T ss_pred CceEEEEecCCceEEEEEeecCceeecccCcccCC-----cceEEeeccCCCCceEEEecc---------cCCCceeeee
Confidence 999999999 9999999999 99988775 22223 455544 445567888765 1357899999
Q ss_pred CCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 405 ILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 405 l~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.+|.|-.+|...++.|.+..+.-+++. . .+. ...+....+..-+..+++|+.|..||.||
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~-----------------~-kp~-~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDA-----------------R-KPD-SLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccC-----------------C-CCC-cccceeeecccCCceeeecCCccceeecc
Confidence 9999999999887544444333222210 0 000 11333456666677899999999999998
Q ss_pred C
Q 011452 485 N 485 (485)
Q Consensus 485 ~ 485 (485)
.
T Consensus 1333 ~ 1333 (1431)
T KOG1240|consen 1333 P 1333 (1431)
T ss_pred C
Confidence 3
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=3.5e-12 Score=134.04 Aligned_cols=328 Identities=12% Similarity=0.126 Sum_probs=219.8
Q ss_pred cchhhhhhhccccccc---CcccccchhHHHhhhccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCC
Q 011452 39 VNSVKKLQRREISSKR---DRAFTMTDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSG 115 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dg 115 (485)
-++...|-.||++..+ .+++.+ .-+-+.+.|+.-+.-|..-+....|+.. |+.|+|+|.|.
T Consensus 101 w~~~~~l~~Re~gss~~f~~~~~~s---~~~vqr~~l~~kL~~H~GcVntV~FN~~-------------Gd~l~SgSDD~ 164 (559)
T KOG1334|consen 101 WQSGTALHQRELGSSSRFVYEACGS---RLFVQRLRLQKKLNKHKGCVNTVHFNQR-------------GDVLASGSDDL 164 (559)
T ss_pred cchhhHHHhhhcCchhHHHHHhhhh---HHHHHHhhhhhcccCCCCccceeeeccc-------------CceeeccCccc
Confidence 4567888899999442 223333 2333456677777777776666666666 99999999999
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeC--CCEEEEEEeecCCCCcccceeEEEEeEe-ccCCcCcccceeeeccc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFESESL 192 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spd--g~~Las~S~d~~~d~stL~~~t~~lw~i-~~G~~~~~~~lf~~~~~ 192 (485)
++-+||-.+++....+..+|...|.---|=|+ -++|++.|+|| ++++-.| .+|+...+..+-.+ -
T Consensus 165 ~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg----------qvr~s~i~~t~~~e~t~rl~~h--~ 232 (559)
T KOG1334|consen 165 QVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG----------QVRVSEILETGYVENTKRLAPH--E 232 (559)
T ss_pred eEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC----------ceeeeeeccccceecceecccc--c
Confidence 99999999888777777778776665556554 56788877543 6666655 56665444444444 3
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCee--EEEEecCCCeEE
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVP--LKILSIEDGTVL 270 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~t--IklWdi~tG~~L 270 (485)
+++.-++-.|-.-+.|-|++.|+.++=.|+..+.....+ ++- ..|.. |.|.+
T Consensus 233 g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~-----------------~cr--~~~~~~~v~L~~------- 286 (559)
T KOG1334|consen 233 GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF-----------------VCR--EADEKERVGLYT------- 286 (559)
T ss_pred CccceeeecCCCCCcccccccccceeeeeeccCCcccee-----------------eee--ccCCccceeeee-------
Confidence 444444444334467889999999999998765422211 110 11111 22222
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE-----------Eecc-cCCCceEEEEEcC-CCcEEEE
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELT-----------EVSR-TEFMTPSAFIFLY-ENQLFLT 337 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~-----------~~l~-gh~~~v~avaFsp-dg~llaS 337 (485)
++..|.....+++++.|.-+|++|.+.-..- ..+. .....|.+++|+. .+.+|||
T Consensus 287 ------------Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 287 ------------IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ------------EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 1211222235666778888888887642211 1111 2234789999994 5556665
Q ss_pred EeCCcEEEEeCC---C----------cEEEE-eecCCCCCCCCCeeEE-EECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 338 FRNRTVAVWNFR---G----------ELVTS-FEDHLLWHPDCNTNNI-YITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 338 ~sD~TIklWd~~---G----------~ll~t-l~gH~~~~~~~~v~sv-afSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
-+|--|-|.+-. | .++.- ++||.+. ..|..| .|-|...|++|||+ =|-|=|
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~---~TVKgVNFfGPrsEyVvSGSD-----------CGhIFi 420 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS---RTVKGVNFFGPRSEYVVSGSD-----------CGHIFI 420 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhcccccc---cccceeeeccCccceEEecCc-----------cceEEE
Confidence 569999999763 5 34444 8899865 224555 46789999999995 589999
Q ss_pred EeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 403 SNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 403 Wdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
|+-.+|+.|+-++|... -|.+|-=+|--..|||.+-|.-|||
T Consensus 421 W~K~t~eii~~MegDr~--------------------------------------VVNCLEpHP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 421 WDKKTGEIIRFMEGDRH--------------------------------------VVNCLEPHPHLPVLASSGIDHDVKI 462 (559)
T ss_pred EecchhHHHHHhhcccc--------------------------------------eEeccCCCCCCchhhccCCccceee
Confidence 99999999999988541 7889998999999999999999999
Q ss_pred cc
Q 011452 483 WS 484 (485)
Q Consensus 483 Wd 484 (485)
|-
T Consensus 463 WT 464 (559)
T KOG1334|consen 463 WT 464 (559)
T ss_pred ec
Confidence 94
No 220
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=3.9e-09 Score=108.67 Aligned_cols=277 Identities=14% Similarity=0.166 Sum_probs=174.3
Q ss_pred EEEEEeCC----CeEEeeec--ccCcEE--EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc-
Q 011452 107 IVFALAQS----GVCAAFCR--ETNQRI--CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR- 177 (485)
Q Consensus 107 ~ias~s~d----gtiklW~~--~tG~~l--~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~- 177 (485)
+++.+++. +.|..|.. ++|++- ..+.. ...-.-|+++|+++.|-++...+... ..+..+.+..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~------g~v~~~~i~~~ 72 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDS------GGVSSYRIDPD 72 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTT------TEEEEEEEETT
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCC------CCEEEEEECCC
Confidence 35666666 78888887 556643 22222 22346689999999998877532122 3555555532
Q ss_pred -CCcCcccceeee-c-cccCceEEEEeCCCCeEEEEee-CCCcEEEeecCC-CeEEEE---Ec------------CCcEE
Q 011452 178 -GKPDAGFALFES-E-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YTMLYS---IS------------DKNVQ 237 (485)
Q Consensus 178 -G~~~~~~~lf~~-~-~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~-g~~l~t---l~------------~~~V~ 237 (485)
|++. +... . ....|-.|+++ |+|++|..+. .+++|-++++.. |++... +. .....
T Consensus 73 ~g~L~----~~~~~~~~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H 147 (345)
T PF10282_consen 73 TGTLT----LLNSVPSGGSSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH 147 (345)
T ss_dssp TTEEE----EEEEEEESSSCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE
T ss_pred cceeE----EeeeeccCCCCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce
Confidence 5652 1221 1 23456689998 7899888776 599999999986 664332 21 13578
Q ss_pred EEEEcCCceEEEEEcCCCCeeEEEEecCCCe--EE--EEeec-CCcceeEEEEEecCCCEEEEE-eCCCcEEEEECC--C
Q 011452 238 EIKISPGIMLLIFTKASGHVPLKILSIEDGT--VL--KSFNH-LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--N 309 (485)
Q Consensus 238 ~VafSpg~~ll~sss~~~D~tIklWdi~tG~--~L--~tl~~-~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~--t 309 (485)
.|.|+|++..+....-.. ..|.++++..+. +. ..+.- ....-+.++|+ |++.++.+. ..+++|-++++. +
T Consensus 148 ~v~~~pdg~~v~v~dlG~-D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGA-DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp EEEE-TTSSEEEEEETTT-TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eEEECCCCCEEEEEecCC-CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc-CCcCEEEEecCCCCcEEEEeecccC
Confidence 999999765444433333 478898887655 32 23321 11233578997 677777665 589999999998 5
Q ss_pred Cee--EEecc----c--CCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC---CcE--EEEeecCCCCCCCCCeeEEEEC
Q 011452 310 FEL--TEVSR----T--EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHLLWHPDCNTNNIYIT 374 (485)
Q Consensus 310 g~~--~~~l~----g--h~~~v~avaFspdg~llaS~s--D~TIklWd~~---G~l--l~tl~gH~~~~~~~~v~svafS 374 (485)
+.+ ++... + .......++++|||++|..+. +.+|-+++++ |++ +..+.-...+ -+.++|+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-----Pr~~~~s 300 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-----PRHFAFS 300 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-----EEEEEE-
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-----ccEEEEe
Confidence 543 22221 1 123789999999999876665 8899999993 554 2333221222 5799999
Q ss_pred CCCCEEEEEecCCCCCCCCcCCCCeEEEEeC--CCCeEEEE
Q 011452 375 SDQDLIISYCKADSDDPLAEGNAGSINISNI--LTGKCLAK 413 (485)
Q Consensus 375 pDG~~LaS~s~d~~~d~~~~~~DgtIklWdl--~TGk~l~t 413 (485)
|||++|+.++.+ +++|.++++ .||++..+
T Consensus 301 ~~g~~l~Va~~~----------s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 301 PDGRYLYVANQD----------SNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTSSEEEEEETT----------TTEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEecC----------CCeEEEEEEeCCCCcEEEe
Confidence 999999999863 689999976 68876544
No 221
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.39 E-value=1.7e-10 Score=122.12 Aligned_cols=325 Identities=16% Similarity=0.205 Sum_probs=216.9
Q ss_pred cceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCC--CCccccee---
Q 011452 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASD--NFSSLRCR--- 168 (485)
Q Consensus 96 s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~--d~stL~~~--- 168 (485)
-+|..+.+| |.+||+. +-.-|.+|.-..+-.|..+. |. -|+-+.|||++++|.+=+.-.-. +....+..
T Consensus 33 ~p~~~~~~SP~G~~l~~~-~~~~V~~~~g~~~~~l~~~~--~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 33 WPVAYVSESPLGTYLFSE-HAAGVECWGGPSKAKLVRFR--HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cchhheeecCcchheehh-hccceEEccccchhheeeee--cC-CceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 345566666 7766654 55668899866554444332 44 49999999999999886642220 11111112
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE----EEEEcCCcEEEEEEcCC
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSISDKNVQEIKISPG 244 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~----l~tl~~~~V~~VafSpg 244 (485)
...+||+..|++..++..-..-.++|+ .+.|+ -|.+++|--. -..++|.++ ++.+ ...+.-..|.+..|||.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp-~~k~s-~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWP-VLKFS-IDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccc-eeeee-ecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 588999999998544333333334664 67887 5777777663 456888887 5542 23344468999999996
Q ss_pred c---eEEEEE--cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE------e-----CCCcEEEEECC
Q 011452 245 I---MLLIFT--KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK------Q-----ENENLQILDVR 308 (485)
Q Consensus 245 ~---~ll~ss--s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~------s-----~D~tIkIWDv~ 308 (485)
+ .|+.-. ....+.+++||.|.-+..|.+-+-..-..-.+.+. +.|+.|+.- + ...++.|.+++
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 2 223222 22345789999999888876543211111234444 346666541 1 34789999998
Q ss_pred CCeeEEecccCCCceEEEEEcCCCcEEEEEe---CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 309 tg~~~~~l~gh~~~v~avaFspdg~llaS~s---D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
... +.+..+-.+.|-.++|.|.++.|+..+ +.++.+.|++|.++..+.... =+.+.|||.+.+|+.++.
T Consensus 264 e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~-------rNT~~fsp~~r~il~agF 335 (561)
T COG5354 264 ERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQK-------RNTIFFSPHERYILFAGF 335 (561)
T ss_pred ccc-cceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcc-------cccccccCcccEEEEecC
Confidence 443 444435578999999999999998765 889999999999877664332 478999999999999887
Q ss_pred CCCCCCCCcCCCCeEEEEeCCCCe-EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEE
Q 011452 386 ADSDDPLAEGNAGSINISNILTGK-CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFY 464 (485)
Q Consensus 386 d~~~d~~~~~~DgtIklWdl~TGk-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~f 464 (485)
+ ---|.|-+||..... |+.++.|-+ -+-+.|
T Consensus 336 ~--------nl~gni~i~~~~~rf~~~~~~~~~n----------------------------------------~s~~~w 367 (561)
T COG5354 336 D--------NLQGNIEIFDPAGRFKVAGAFNGLN----------------------------------------TSYCDW 367 (561)
T ss_pred C--------ccccceEEeccCCceEEEEEeecCC----------------------------------------ceEeec
Confidence 2 124789999987543 444776643 123689
Q ss_pred cCCCCEEEEec------CCCcEEEccC
Q 011452 465 DEDRNEIYTGN------RHGLVHVWSN 485 (485)
Q Consensus 465 spDg~~LaSgs------~DgtVklWd~ 485 (485)
||||+.+.+.- .|..|+|||+
T Consensus 368 spd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 368 SPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cCCceEEEecCCCcccccCcceEEEEe
Confidence 99999998874 5899999984
No 222
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=4.5e-10 Score=119.39 Aligned_cols=201 Identities=12% Similarity=0.103 Sum_probs=126.9
Q ss_pred EEEEeCCCCeE--EEEeeC-C--CcEEEeecCCCeE--EEEEcCCcEEEEEEcCCceEEEEEc-C--CCCeeEEEEecCC
Q 011452 197 FVEFDDVNGKV--LTYSAQ-D--SIYKVFDLKNYTM--LYSISDKNVQEIKISPGIMLLIFTK-A--SGHVPLKILSIED 266 (485)
Q Consensus 197 ~V~Fs~pnG~~--Las~s~-D--~tiKlWdl~~g~~--l~tl~~~~V~~VafSpg~~ll~sss-~--~~D~tIklWdi~t 266 (485)
+-+|+ |||+. +++-|. + ..|-+.++.+|+. +..+.+ .....+|||+|..++..+ . ..|..+.+|++.+
T Consensus 189 sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g-~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 189 TPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG-NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred cceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC-CccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 45787 79875 433332 3 3566778888763 333333 455689999774444433 2 2245666788876
Q ss_pred C---eEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEEC--CC-CeeEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 267 G---TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RN-FELTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 267 G---~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv--~t-g~~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
| +..+...++.+.....+|+ |||.+|+..+ .++..+||.+ .. +...+.+..+...+....|||||+.|+..+
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence 3 4333333332344577886 7888888875 5777777754 32 233444444555667889999999998765
Q ss_pred -C---CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 340 -N---RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 340 -D---~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+ ..|.+||+. |++ +.+...... +.+..|+|||+.|+-.+. ......|.+||+.+|+.....
T Consensus 346 ~~~g~~~I~v~dl~~g~~-~~Lt~~~~~-----~~~p~wSpDG~~L~f~~~--------~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 346 VIKGVRQICVYDLATGRD-YQLTTSPEN-----KESPSWAIDSLHLVYSAG--------NSNESELYLISLITKKTRKIV 411 (428)
T ss_pred cCCCCcEEEEEECCCCCe-EEccCCCCC-----ccceEECCCCCEEEEEEC--------CCCCceEEEEECCCCCEEEee
Confidence 2 369999997 554 445433222 578999999999885543 122467999999888764443
No 223
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.38 E-value=3.5e-11 Score=120.41 Aligned_cols=256 Identities=13% Similarity=0.134 Sum_probs=170.0
Q ss_pred cCEEEEEeC----CCeEEe--eecccCcEEEEeecCCcccEEEEEEeeCC-----CEEEEEEeecCCCCcccceeEEEEe
Q 011452 105 RDIVFALAQ----SGVCAA--FCRETNQRICFLNVTADEVIRSLFYNKNN-----DSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 105 ~~~ias~s~----dgtikl--W~~~tG~~l~tl~g~~~~~i~sv~~spdg-----~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
+..||.||. ...+.+ .+-++|+.+..-+.-|.-++..+-|.|+- +.|||.| | ..|||
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-----D-------~LRlW 126 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-----D-------FLRLW 126 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-----C-------eEEEE
Confidence 455555553 233333 23456777776666677889999999987 5788744 3 78899
Q ss_pred Eec--cCCcCcccceeee----ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--E---EEEcCCcEEEEEEc
Q 011452 174 YIR--RGKPDAGFALFES----ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--L---YSISDKNVQEIKIS 242 (485)
Q Consensus 174 ~i~--~G~~~~~~~lf~~----~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l---~tl~~~~V~~VafS 242 (485)
.+- .++... +.++.. +.-....+..+...|-.+|.++|-|-|.-|||+++|.- + ..-|+.+|.+|+|+
T Consensus 127 ri~~ee~~~~~-~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~ 205 (364)
T KOG0290|consen 127 RIGDEESRVEL-QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFL 205 (364)
T ss_pred eccCcCCceeh-hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEec
Confidence 874 333310 001111 11111123344455668999999999999999998732 2 22368899999999
Q ss_pred CCc-eEEEEEcCCCCeeEEEEecCCCeEEEEe--ecC--CcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCC-eeEEe
Q 011452 243 PGI-MLLIFTKASGHVPLKILSIEDGTVLKSF--NHL--LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNF-ELTEV 315 (485)
Q Consensus 243 pg~-~ll~sss~~~D~tIklWdi~tG~~L~tl--~~~--~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg-~~~~~ 315 (485)
-|+ .+.++ -+.|+.+|++|+..-+ .-|+ +.- ....-.+++..+|..++++= -+...|.|.|++.- ..+..
T Consensus 206 ~~s~~~FAS--vgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 206 KGSRDVFAS--VGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred cCccceEEE--ecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 643 33334 3556999999986522 1122 111 12234677777777777764 46688999999974 56888
Q ss_pred cccCCCceEEEEEcCCC-cEEEEEe-CCcEEEEeCC--Cc-------EEEEeecCCCCCCCCCeeEEEECC-CCCEEEEE
Q 011452 316 SRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GE-------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISY 383 (485)
Q Consensus 316 l~gh~~~v~avaFspdg-~llaS~s-D~TIklWd~~--G~-------ll~tl~gH~~~~~~~~v~svafSp-DG~~LaS~ 383 (485)
|++|...|++++|.|.. ..+.|++ |..+-|||++ .. +..+ .+|. ||.|.++| .++.|+.+
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~E-------VNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGE-------VNQIQWSSSQPDWIAIC 354 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccce-------eeeeeecccCCCEEEEE
Confidence 99999999999999865 5678888 9999999984 32 2233 2333 99999995 67888877
Q ss_pred e
Q 011452 384 C 384 (485)
Q Consensus 384 s 384 (485)
.
T Consensus 355 ~ 355 (364)
T KOG0290|consen 355 F 355 (364)
T ss_pred e
Confidence 6
No 224
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2.6e-10 Score=126.41 Aligned_cols=268 Identities=14% Similarity=0.146 Sum_probs=175.6
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC--eEEEEeeCCC
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG--KVLTYSAQDS 215 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG--~~Las~s~D~ 215 (485)
.-.--.||+|++.|+... .+ +++|+...+|++.. .+. ++....-.+.+.+..- -++-.++.||
T Consensus 18 ~~~~avfSnD~k~l~~~~----~~-------~V~VyS~~Tg~~i~---~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G 82 (792)
T KOG1963|consen 18 NKSPAVFSNDAKFLFLCT----GN-------FVKVYSTATGECIT---SLE-DHTAPLTSVIVLPSSENANYLIVCSLDG 82 (792)
T ss_pred eecccccccCCcEEEEee----CC-------EEEEEecchHhhhh---hcc-cccCccceeeecCCCccceEEEEEecCc
Confidence 334457899999998855 34 89999999999832 233 3455555777764323 4566899999
Q ss_pred cEEEeecCCCeEEEEEc-CCcEEEEEEcCCce---EEEEEcCCCCeeEEEEe---cCCCeEE-----EE--------eec
Q 011452 216 IYKVFDLKNYTMLYSIS-DKNVQEIKISPGIM---LLIFTKASGHVPLKILS---IEDGTVL-----KS--------FNH 275 (485)
Q Consensus 216 tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~---ll~sss~~~D~tIklWd---i~tG~~L-----~t--------l~~ 275 (485)
+|++||...+.++.++. +-.|.+..+.|-.+ ...+.+.. ..++.. .+.++.. .+ ++.
T Consensus 83 ~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~---~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 83 TIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVE---DYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred cEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecc---cceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 99999999999999986 33565555544111 11111111 111111 1111111 11 111
Q ss_pred CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe-----cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV-----SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 276 ~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~-----l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
|.- -..|.+. +. +....--.+..+-+|++.++. ..+ -..|+..+.+++|||.++.+|++- ||.|.+|.--
T Consensus 160 ~~~-~~~I~~~-~~-ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~ 235 (792)
T KOG1963|consen 160 HQE-PKSIVDN-NS-GEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDF 235 (792)
T ss_pred hcC-CccEEEc-CC-ceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecc
Confidence 111 1233332 21 222222367788999998755 222 245777789999999999999998 9999999854
Q ss_pred C-----cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011452 350 G-----ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424 (485)
Q Consensus 350 G-----~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~ 424 (485)
| +-.+.|- ||.+. |++++||+||-+|.||+. .|-.-+|.+.|++ ++|-.-=+
T Consensus 236 ~~~~~~~t~t~lH----WH~~~-V~~L~fS~~G~~LlSGG~-----------E~VLv~Wq~~T~~--kqfLPRLg----- 292 (792)
T KOG1963|consen 236 GSSDDSETCTLLH----WHHDE-VNSLSFSSDGAYLLSGGR-----------EGVLVLWQLETGK--KQFLPRLG----- 292 (792)
T ss_pred ccccccccceEEE----ecccc-cceeEEecCCceEeeccc-----------ceEEEEEeecCCC--cccccccC-----
Confidence 4 2234443 44443 899999999999999987 7999999999988 34432111
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
..|..+.+|||+...+.--.|+.|+|
T Consensus 293 --------------------------------s~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 293 --------------------------------SPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred --------------------------------CeeEEEEEcCCCCeEEEEecCceEEE
Confidence 28999999999999888888998886
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.38 E-value=4.8e-10 Score=117.28 Aligned_cols=283 Identities=9% Similarity=0.018 Sum_probs=172.7
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
|.+++..+.||.+.++|+.+++.+.++..+.+ -+++++||||++|+.+... . .++.|.|.++.++.+..
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~--~~~i~~s~DG~~~~v~n~~--~-------~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKVGGN--PRGIAVSPDGKYVYVANYE--P-------GTVSVIDAETLEPVKTI 116 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE--EEEEEE--TTTEEEEEEEE--T-------TEEEEEETTT--EEEEE
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEecCCC--cceEEEcCCCCEEEEEecC--C-------CceeEeccccccceeec
Confidence 88999999999999999999999999987543 6999999999999876542 2 47888887777663221
Q ss_pred ceeeec---cccCceEEEEeCCCCeEEEEeeCC-CcEEEeecCCCeEE--EEEc-CCcEEEEEEcCCceE-EEEEcCCCC
Q 011452 185 ALFESE---SLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTML--YSIS-DKNVQEIKISPGIML-LIFTKASGH 256 (485)
Q Consensus 185 ~lf~~~---~~~~~~~V~Fs~pnG~~Las~s~D-~tiKlWdl~~g~~l--~tl~-~~~V~~VafSpg~~l-l~sss~~~D 256 (485)
+.-... .-..+..|..+ |....++..-.| +.|-+=|..+.+.+ ..+. +..-.+..|+|++++ ++++..+
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s-~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s-- 193 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVAS-PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS-- 193 (369)
T ss_dssp E--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG--
T ss_pred ccccccccccCCCceeEEec-CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc--
Confidence 111110 00122355565 456644444444 44444465554422 3443 457788999987654 4444433
Q ss_pred eeEEEEecCCCeEEEEee-cCCc---cee-------EEEEEecCCCEEE-EEeCCCcEEEEECCCCeeEEecccCCCceE
Q 011452 257 VPLKILSIEDGTVLKSFN-HLLH---RNK-------KVDFIEQFNEKLL-VKQENENLQILDVRNFELTEVSRTEFMTPS 324 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~-~~~~---~~~-------~V~f~~~~~~~ll-s~s~D~tIkIWDv~tg~~~~~l~gh~~~v~ 324 (485)
..|-++|.++++....+. +... +.. ..-|.....+..+ +.-....+.+||..+.+.++.+...... -
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l 272 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L 272 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--
T ss_pred ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-c
Confidence 589999999999887664 1111 111 1112111111222 2222336668999999999988766544 5
Q ss_pred EEEEcCCCcEEEEE---e--CCcEEEEeCC-CcEEEEeecCCC-CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 325 AFIFLYENQLFLTF---R--NRTVAVWNFR-GELVTSFEDHLL-WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 325 avaFspdg~llaS~---s--D~TIklWd~~-G~ll~tl~gH~~-~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
-+.-+|+++++... + .++|.|+|.+ -+.+.++..... . +.-+.|++||+.+--+..+ .+
T Consensus 273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~-----~~h~ef~~dG~~v~vS~~~---------~~ 338 (369)
T PF02239_consen 273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKR-----VVHMEFNPDGKEVWVSVWD---------GN 338 (369)
T ss_dssp -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-------EEEEEE-TTSSEEEEEEE-----------T
T ss_pred eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCc-----EeccEECCCCCEEEEEEec---------CC
Confidence 56679999999988 3 5899999997 788888863322 2 6789999999988776662 24
Q ss_pred CeEEEEeCCCCeEEEEecC
Q 011452 398 GSINISNILTGKCLAKIRA 416 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~g 416 (485)
+.|.++|..|.++++.|..
T Consensus 339 ~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-
T ss_pred CEEEEEECCCcEEEEEEEe
Confidence 5999999999999999984
No 226
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=4.3e-09 Score=109.63 Aligned_cols=267 Identities=12% Similarity=0.113 Sum_probs=168.6
Q ss_pred CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEee------cCCCCcccceeEEEEeEeccCCcCcccce--
Q 011452 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVY------ASDNFSSLRCRSTRIEYIRRGKPDAGFAL-- 186 (485)
Q Consensus 115 gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d------~~~d~stL~~~t~~lw~i~~G~~~~~~~l-- 186 (485)
+++.+.|.++++.+.++..+..- +-+ +||||+.|..+..+ |.++ ..+.++|+.++++....++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~------d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRT------DYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCC------CEEEEEECccCcEEeEEccCC
Confidence 89999999999999999875443 234 99999999887741 1122 4899999999887433332
Q ss_pred ---eeeccccCceEEEEeCCCCeEEEEee--CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 187 ---FESESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 187 ---f~~~~~~~~~~V~Fs~pnG~~Las~s--~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
|. ....+..++++ |||+.|.-.- .+..|-|.|+.+++.+..+. .....-+..+++...+.+ .+. ..++
T Consensus 98 ~p~~~--~~~~~~~~~ls-~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~-~Dg--~~~~ 171 (352)
T TIGR02658 98 GPRFL--VGTYPWMTSLT-PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHC-RDG--SLAK 171 (352)
T ss_pred Cchhh--ccCccceEEEC-CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEe-ecC--ceEE
Confidence 11 13445578998 7999876443 38999999999999988885 222222333222211111 000 1111
Q ss_pred EEecCCCeEE-EE---eecCCcc--eeEEEEEecCCCEEEEEeCCCcEEEEECCC-----CeeEEecccC-------CCc
Q 011452 261 ILSIEDGTVL-KS---FNHLLHR--NKKVDFIEQFNEKLLVKQENENLQILDVRN-----FELTEVSRTE-------FMT 322 (485)
Q Consensus 261 lWdi~tG~~L-~t---l~~~~~~--~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-----g~~~~~l~gh-------~~~ 322 (485)
+=.=.+|+.. ++ |.+-... ... .|.+.++..+-++.+ ++|.+-|+.. .+...++.-. ...
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 1111233321 11 1110000 011 344335655555656 9999999543 3444433211 122
Q ss_pred eEEEEEcCCCcEEEEEe-----------CCcEEEEeCC-CcEEEEee-cCCCCCCCCCeeEEEECCCCC-EEEEEecCCC
Q 011452 323 PSAFIFLYENQLFLTFR-----------NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKADS 388 (485)
Q Consensus 323 v~avaFspdg~llaS~s-----------D~TIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~ 388 (485)
+..++++|||+++.... .++|.++|.. ++.+..+. |+. +++|+|||||+ +|...+.
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-------~~~iavS~Dgkp~lyvtn~--- 319 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-------IDSINVSQDAKPLLYALST--- 319 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-------eeeEEECCCCCeEEEEeCC---
Confidence 23399999988776632 2589999995 99888776 654 78999999999 8887764
Q ss_pred CCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 389 DDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
.+++|-+.|+.+++.++++.
T Consensus 320 -------~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 320 -------GDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred -------CCCcEEEEECcCCeEEeeec
Confidence 26899999999999999984
No 227
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.36 E-value=3.1e-11 Score=128.16 Aligned_cols=254 Identities=12% Similarity=0.162 Sum_probs=158.0
Q ss_pred ccccceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEE--------eeCCCEEEEEEeecCCCCc
Q 011452 93 RKRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFY--------NKNNDSLITVSVYASDNFS 163 (485)
Q Consensus 93 ~~~s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~--------spdg~~Las~S~d~~~d~s 163 (485)
|+...|..+..+ .+-+...+.|..+-+|+-.+......++. +++.|...-+ -..++.++..|.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~-p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG----- 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKL-PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG----- 85 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhC-CcccCCccccccccccCCCCCcceEEEEcCCc-----
Confidence 455556667776 34444444455555554333433333333 3333322222 22345566655433
Q ss_pred ccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEE
Q 011452 164 SLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKI 241 (485)
Q Consensus 164 tL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~Vaf 241 (485)
.+.|-. +.|+.... .. .|-+.+.+-.++ |||.-|.+++.||.||+|. ++|-+..++- +..|.++++
T Consensus 86 -----kf~il~-k~~rVE~s---v~-AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 86 -----RFVILN-KSARVERS---IS-AHAAAISSGRWS-PDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred -----eEEEec-ccchhhhh---hh-hhhhhhhhcccC-CCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 222323 45554210 00 122323334576 7999999999999999998 5665545553 358999999
Q ss_pred cCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCC
Q 011452 242 SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM 321 (485)
Q Consensus 242 Spg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~ 321 (485)
-|+.--+.++.+ ++..||=.-.. -+.+ ..+.|.+-+-+++|++ ....++++++|...||||-. |..+-+...|..
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL~~n-~k~i-~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPLAAN-SKII-RWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY 228 (737)
T ss_pred CCCCCceEEecC-CeEEEeecccc-ccee-EEeccCcEEEEeecCc-cccceeecCCceeEEeeccc-CcccccCChhcc
Confidence 984433333332 23455544332 1222 3456778889999985 46788899999999999988 666777778999
Q ss_pred ceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 322 TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 322 ~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.+.+|+|.|| ++++-+|-+|.+ |+.-.. +.|.++++||||..++.|+.
T Consensus 229 ~ITSva~npd-~~~~v~S~nt~R-----------~~~p~~----GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 229 AITSVAFNPE-KDYLLWSYNTAR-----------FSSPRV----GSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred ceeeeeeccc-cceeeeeeeeee-----------ecCCCc----cceEEEEEcCCCceeecccc
Confidence 9999999999 888877755665 222111 22899999999999999885
No 228
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=2e-09 Score=112.14 Aligned_cols=262 Identities=13% Similarity=0.127 Sum_probs=161.7
Q ss_pred cccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC----------CCcEEEeecCCCeEEEEEc
Q 011452 163 SSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 163 stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~----------D~tiKlWdl~~g~~l~tl~ 232 (485)
.++. .++.+-|..+++... .+..+ ..|..+ ++ |||+.|..+.. +..|.|||+++++.+..+.
T Consensus 23 ~~~~-~~v~ViD~~~~~v~g---~i~~G--~~P~~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 23 FAAT-TQVYTIDGEAGRVLG---MTDGG--FLPNPV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred cccC-ceEEEEECCCCEEEE---EEEcc--CCCcee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 3344 566676776666522 22222 233445 87 78887766654 8999999999999998885
Q ss_pred C---------CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEE--------EecCCCEEEE
Q 011452 233 D---------KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF--------IEQFNEKLLV 295 (485)
Q Consensus 233 ~---------~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f--------~~~~~~~lls 295 (485)
- ..-..+++||++++|.-+..+.+..|-+.|+++++.++++.- ..-..+.- ...|+..+-.
T Consensus 95 ~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 95 LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccEEEeecCceEEE
Confidence 1 234579999987766544445568999999999999998862 11011110 0122332222
Q ss_pred Ee-CCCcEEEEECCCCeeEEecccCC----CceEEEEEcC-CCcEEEEEeCCcEEEEeCCC------cEEEEeecC---C
Q 011452 296 KQ-ENENLQILDVRNFELTEVSRTEF----MTPSAFIFLY-ENQLFLTFRNRTVAVWNFRG------ELVTSFEDH---L 360 (485)
Q Consensus 296 ~s-~D~tIkIWDv~tg~~~~~l~gh~----~~v~avaFsp-dg~llaS~sD~TIklWd~~G------~ll~tl~gH---~ 360 (485)
.. .+++.+ ..+ ..++.+.. ..+ .|++ ||+++-.+..|+|.+=|+.+ +.+.+++.. .
T Consensus 173 ~~d~~g~~~---~~~---~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 173 GYGTKGNPK---IKP---TEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred EecCCCceE---Eee---eeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecccccccc
Confidence 21 333322 010 11111100 222 4556 77777555569999999643 233333322 2
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccc
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVK 440 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 440 (485)
.|.|.+ ..-++++|||++|.-......+. --....+.|-++|..|++.+..+.--.
T Consensus 244 ~wrP~g-~q~ia~~~dg~~lyV~~~~~~~~-thk~~~~~V~ViD~~t~kvi~~i~vG~---------------------- 299 (352)
T TIGR02658 244 GWRPGG-WQQVAYHRARDRIYLLADQRAKW-THKTASRFLFVVDAKTGKRLRKIELGH---------------------- 299 (352)
T ss_pred ccCCCc-ceeEEEcCCCCEEEEEecCCccc-cccCCCCEEEEEECCCCeEEEEEeCCC----------------------
Confidence 577776 35699999999998754210000 000123689999999999999987421
Q ss_pred ccccccccccchhcccCCeEEEEEcCCCC-EEEEec-CCCcEEEcc
Q 011452 441 KHSHASRIRSTVAEALEDITALFYDEDRN-EIYTGN-RHGLVHVWS 484 (485)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs-~DgtVklWd 484 (485)
.+++|+|||||+ .||..+ .+++|.+-|
T Consensus 300 -----------------~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 300 -----------------EIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred -----------------ceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 788999999999 999888 578888765
No 229
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.32 E-value=1.2e-10 Score=127.36 Aligned_cols=240 Identities=13% Similarity=0.067 Sum_probs=169.1
Q ss_pred ccceEEEEEe---cCEEEEEeCCCeEEeeecccCcE-----EEEeecCCcccEEEEEEeeC--CCEEEEEEeecCCCCcc
Q 011452 95 RSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQR-----ICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSS 164 (485)
Q Consensus 95 ~s~V~~i~~s---~~~ias~s~dgtiklW~~~tG~~-----l~tl~g~~~~~i~sv~~spd--g~~Las~S~d~~~d~st 164 (485)
+++|..+.|+ ..+||.|+++|.|-+||+..++. ++.+-..|.+.+..+.+-++ +.-++++|.||
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG------ 315 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG------ 315 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC------
Confidence 5788889988 89999999999999999887775 66777789999999999555 44489988644
Q ss_pred cceeEEEEeEecc------CCcCccccee--eeccccC--ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe----EEEE
Q 011452 165 LRCRSTRIEYIRR------GKPDAGFALF--ESESLKW--PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYS 230 (485)
Q Consensus 165 L~~~t~~lw~i~~------G~~~~~~~lf--~~~~~~~--~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~----~l~t 230 (485)
.+..|+++. +.+.. ... ..+.... .-.++|-+-+=..+.-|+.+|.|--=+-+.++ .++.
T Consensus 316 ----~i~~W~~~~l~~P~e~~~~~--~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 316 ----SICSWDTDMLSLPVEGLLLE--SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred ----cEeeeeccccccchhhcccc--cccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence 777887621 11110 001 0000111 22578865455566778888888763333222 2223
Q ss_pred ------EcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecC-CCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcE
Q 011452 231 ------ISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENL 302 (485)
Q Consensus 231 ------l~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~-tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tI 302 (485)
.+...|..|.++| .-.+..++. |-++|||+-. .-..|..+..+...+.+|+|++-....++++-.||+|
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 3456899999999 555554433 4799999976 5567777777777899999997666777778899999
Q ss_pred EEEECCCCe--eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 303 QILDVRNFE--LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 303 kIWDv~tg~--~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
-|||+.... .+....-+......+.|++.|++|+.|. .|+|.+|++.
T Consensus 467 ~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 999998543 3333333444556677888899999999 9999999984
No 230
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.32 E-value=4.6e-12 Score=132.57 Aligned_cols=225 Identities=18% Similarity=0.168 Sum_probs=174.1
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEE
Q 011452 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 218 (485)
Q Consensus 139 i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiK 218 (485)
=+.+-|+.||..|+.++.- +.+-..|..++++ .|+....--+..|.|- .|-+++|- ++-+-+.
T Consensus 132 PY~~~ytrnGrhlllgGrK----------GHlAa~Dw~t~~L-----~~Ei~v~Etv~Dv~~L-Hneq~~AV-AQK~y~y 194 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRK----------GHLAAFDWVTKKL-----HFEINVMETVRDVTFL-HNEQFFAV-AQKKYVY 194 (545)
T ss_pred CeeeeecCCccEEEecCCc----------cceeeeeccccee-----eeeeehhhhhhhhhhh-cchHHHHh-hhhceEE
Confidence 4788999999999875532 2444557788887 4554222224478885 57788774 5788888
Q ss_pred EeecCCCeEEEEEcC-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe
Q 011452 219 VFDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ 297 (485)
Q Consensus 219 lWdl~~g~~l~tl~~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s 297 (485)
|+| ..|++++-+.. ..|..+.|-|-..||++++.. +-++--|+.+|++...|..-.+.+..+.-. |-+..+=.|.
T Consensus 195 vYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~--G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~NaVih~Gh 270 (545)
T KOG1272|consen 195 VYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEA--GFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNAVIHLGH 270 (545)
T ss_pred Eec-CCCcEEeehhhcCchhhhcccchhheeeecccC--CceEEEeechhhhhHHHHccCCccchhhcC-CccceEEEcC
Confidence 999 68999999875 589999999999999887655 799999999999998887544555444433 5566667788
Q ss_pred CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec-CCCCCCCCCeeEEEEC
Q 011452 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYIT 374 (485)
Q Consensus 298 ~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafS 374 (485)
..|||-+|.....+.+.-+--|...|+++|+.|+|+++||++ |+.+||||++ -..+.++.- |. ...++||
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~-------a~~ls~S 343 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP-------ASNLSLS 343 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC-------ccccccc
Confidence 999999999999998877778999999999999999999999 9999999997 444444433 32 5789999
Q ss_pred CCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 375 SDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 375 pDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
.-|-+.+|.+ .-|.||-
T Consensus 344 qkglLA~~~G-------------~~v~iw~ 360 (545)
T KOG1272|consen 344 QKGLLALSYG-------------DHVQIWK 360 (545)
T ss_pred cccceeeecC-------------Ceeeeeh
Confidence 9987777765 3688894
No 231
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.1e-10 Score=120.37 Aligned_cols=249 Identities=15% Similarity=0.146 Sum_probs=171.1
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC------CeEEEEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------YTMLYSI---SDKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~------g~~l~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
+|.+-+.+++|+ .||+.||||+.|.-++||++.. .+.+... |..+|.+++|.-+...+.++ ..+++|-
T Consensus 54 ~H~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG--~~~~~VI 130 (609)
T KOG4227|consen 54 EHTGCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG--ERWGTVI 130 (609)
T ss_pred hhccccceeeec-cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC--CCcceeE
Confidence 456667789998 6899999999999999999752 2333322 12589999999888887764 4568999
Q ss_pred EEecCCCeEEEEeecCC--cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEE--ecccCCCceEEEEEcCCC-cE
Q 011452 261 ILSIEDGTVLKSFNHLL--HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTE--VSRTEFMTPSAFIFLYEN-QL 334 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~--~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-~~~--~l~gh~~~v~avaFspdg-~l 334 (485)
+-|+++-+.|..+++.. +.|+.+.-+ |-+..+++.+.|+-|-+||.+... .+. .+..-.....++.|.|.- .|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred eeecccceeeeeecccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 99999999999998432 245666655 446788888999999999998654 221 122233456778899965 46
Q ss_pred EEEEe-CCcEEEEeCC--CcEEEEeecCCCCCC-CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 335 FLTFR-NRTVAVWNFR--GELVTSFEDHLLWHP-DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 335 laS~s-D~TIklWd~~--G~ll~tl~gH~~~~~-~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
|++.+ -+-+-|||.+ ...+....+...... +..-.++-|+|+|..+++--. -.-=-++|+.+.+|
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR-----------~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR-----------GKCPLYFDFISQRC 278 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc-----------cCCCEEeeeecccc
Confidence 67777 8889999985 222222211111100 111157899999998887543 12234788887777
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..--..|+. -+-||+. .+-+++|--|.. ++|||.|=-|++|.+
T Consensus 279 ~V~k~D~N~--------------~GY~N~~-----------------T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 279 FVLKSDHNP--------------NGYCNIK-----------------TIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred eeEeccCCC--------------Ccceeee-----------------eeeeeeeeccee-eeccCcccceEEEec
Confidence 544445541 1335444 566788877765 999999999999974
No 232
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.30 E-value=1.1e-10 Score=124.12 Aligned_cols=201 Identities=11% Similarity=0.125 Sum_probs=151.4
Q ss_pred eEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEE
Q 011452 206 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283 (485)
Q Consensus 206 ~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V 283 (485)
..++-++.||.+-+-+ ++|+.-.++. ...|.+-.++|+|.-|.+++ .|+.||+|+- +|-+.-++....-.+++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~G--EDG~iKiWSr-sGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAG--EDGVIKIWSR-SGMLRSTVVQNEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeec--CCceEEEEec-cchHHHHHhhcCceeEEE
Confidence 4566777898887776 5666555554 45788999998776666644 4589999994 787766776655788999
Q ss_pred EEEecCCCEEEEEeCC-CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCC
Q 011452 284 DFIEQFNEKLLVKQEN-ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL 361 (485)
Q Consensus 284 ~f~~~~~~~lls~s~D-~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~ 361 (485)
+|- |+.+.++-++.+ -.||=.... .+.+ ..+.|.+-|-++.|+|.+.+++|++ |-..||||..|..+.+-..|..
T Consensus 152 ~W~-p~S~~vl~c~g~h~~IKpL~~n-~k~i-~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 152 RWA-PNSNSIVFCQGGHISIKPLAAN-SKII-RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEY 228 (737)
T ss_pred EEC-CCCCceEEecCCeEEEeecccc-ccee-EEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhcc
Confidence 996 555666665433 334433322 2333 3468999999999999999999999 9999999999999998888887
Q ss_pred CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccc
Q 011452 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 362 ~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 441 (485)
. +.+|+|.|| +..+-+|. +|.|+ ..-.
T Consensus 229 ~-----ITSva~npd-~~~~v~S~------------nt~R~------------~~p~----------------------- 255 (737)
T KOG1524|consen 229 A-----ITSVAFNPE-KDYLLWSY------------NTARF------------SSPR----------------------- 255 (737)
T ss_pred c-----eeeeeeccc-cceeeeee------------eeeee------------cCCC-----------------------
Confidence 7 999999999 66666665 67763 1111
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
. +.|..|+|||||..++.|...|.|
T Consensus 256 ---~-----------GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 256 ---V-----------GSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ---c-----------cceEEEEEcCCCceeeccccCceE
Confidence 0 389999999999999999988876
No 233
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=5.4e-11 Score=120.91 Aligned_cols=182 Identities=13% Similarity=0.174 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEe--cccCC-C
Q 011452 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNFELTEV--SRTEF-M 321 (485)
Q Consensus 246 ~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~-~~~~lls~s~D~tIkIWDv~tg~~~~~--l~gh~-~ 321 (485)
.+|++-|. ++|||+|..||+.|..|+++..++..|.|+.- .+.-+++++.||+||+||+++...... ..+|. .
T Consensus 42 ~vav~lSn---gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 42 AVAVSLSN---GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eEEEEecC---CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 34455444 69999999999999999999999999999854 345677789999999999998654333 34444 2
Q ss_pred ceEEEEEcCCCcEEEEEe-----CCcEEEEeCC--CcEEEE-eecCCCCCCCCCeeEEEECC-CCCEEEEEecCCCCCCC
Q 011452 322 TPSAFIFLYENQLFLTFR-----NRTVAVWNFR--GELVTS-FEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPL 392 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-----D~TIklWd~~--G~ll~t-l~gH~~~~~~~~v~svafSp-DG~~LaS~s~d~~~d~~ 392 (485)
.-.+++..-.+++++.+. |-.|-+||++ -+++.. .+.|.+- |..|.|.| |-.+|+|||-
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD-----VT~lrFHP~~pnlLlSGSv------- 186 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD-----VTQLRFHPSDPNLLLSGSV------- 186 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc-----ceeEEecCCCCCeEEeecc-------
Confidence 344455555778888774 6689999996 444554 4567655 99999999 5689999987
Q ss_pred CcCCCCeEEEEeCCCCe----EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 393 AEGNAGSINISNILTGK----CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 393 ~~~~DgtIklWdl~TGk----~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
||-|+|+|+.--. ++.+|. |. ..|..+.|..++
T Consensus 187 ----DGLvnlfD~~~d~EeDaL~~viN-~~--------------------------------------sSI~~igw~~~~ 223 (376)
T KOG1188|consen 187 ----DGLVNLFDTKKDNEEDALLHVIN-HG--------------------------------------SSIHLIGWLSKK 223 (376)
T ss_pred ----cceEEeeecCCCcchhhHHHhhc-cc--------------------------------------ceeeeeeeecCC
Confidence 8999999986321 111111 11 168889999888
Q ss_pred -CEEEEecCCCcEEEccC
Q 011452 469 -NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 469 -~~LaSgs~DgtVklWd~ 485 (485)
+.|.+-+.+++..+|++
T Consensus 224 ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYEL 241 (376)
T ss_pred cceEEEEEccCceeEEEc
Confidence 56999999999999973
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=7.1e-11 Score=132.73 Aligned_cols=191 Identities=11% Similarity=0.079 Sum_probs=144.7
Q ss_pred cEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCccee--EEEEE--ecCCCEEEEEeCCCcEEEEECCC
Q 011452 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFI--EQFNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 235 ~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~--~V~f~--~~~~~~lls~s~D~tIkIWDv~t 309 (485)
+|..-.+. .+..++...+ ++.+-|||...+.++....+- .+.. ..... .+..=++++++-=+.|-+|+..-
T Consensus 89 wi~g~~l~~e~k~i~l~~~---~ns~~i~d~~~~~~~~~i~~~-er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTS---RNSLLIRDSKNSSVLSKIQSD-ERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred cccccchhhhcceEEEEEc---CceEEEEecccCceehhcCCC-ceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence 44444444 3445555433 368888888877777655421 1111 11111 12223556677888999999873
Q ss_pred CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEE-EeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 310 FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 310 g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
-+.-..+.||.+.+.++.+|-||.+++|.| |++|++|+++ ++.+. +.=||... |+.+.|.|+ +|+|++.
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR-----vw~~~~~~n--~i~t~ge- 236 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR-----VWACCFLPN--RIITVGE- 236 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce-----eEEEEeccc--eeEEecc-
Confidence 232224789999999999999999999999 9999999996 77555 77789877 999999999 9999986
Q ss_pred CCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC
Q 011452 387 DSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE 466 (485)
Q Consensus 387 ~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp 466 (485)
|.|.++|+.. |+.+.++.+|.. ..|+.++.++
T Consensus 237 ----------dctcrvW~~~-~~~l~~y~~h~g-------------------------------------~~iw~~~~~~ 268 (967)
T KOG0974|consen 237 ----------DCTCRVWGVN-GTQLEVYDEHSG-------------------------------------KGIWKIAVPI 268 (967)
T ss_pred ----------ceEEEEEecc-cceehhhhhhhh-------------------------------------cceeEEEEcC
Confidence 7999999864 888899999974 3899999999
Q ss_pred CCCEEEEecCCCcEEEccC
Q 011452 467 DRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 467 Dg~~LaSgs~DgtVklWd~ 485 (485)
+-.+++||+.|+++|+|+.
T Consensus 269 ~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 269 GVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred CceEEEeeccCcchhhhhh
Confidence 9999999999999999983
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=5e-08 Score=100.53 Aligned_cols=242 Identities=16% Similarity=0.251 Sum_probs=155.8
Q ss_pred ccCceEEEEeCCCCeEEEEeeC----CCcEEEeecCC--CeE--EEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEE
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQ----DSIYKVFDLKN--YTM--LYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~----D~tiKlWdl~~--g~~--l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIkl 261 (485)
...|.+++++ |++++|-.... ++.|-.|++.. |++ +.+.. +..-..|+++|++..|..+.- .+++|-+
T Consensus 36 ~~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany-~~g~v~v 113 (345)
T PF10282_consen 36 GENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY-GGGSVSV 113 (345)
T ss_dssp SSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET-TTTEEEE
T ss_pred CCCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc-cCCeEEE
Confidence 3456789998 68887766654 57898888765 554 33333 456678999985555544432 2479999
Q ss_pred EecCC-CeEEEE---eec----------CCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCe--eEE--e-cccCCC
Q 011452 262 LSIED-GTVLKS---FNH----------LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFE--LTE--V-SRTEFM 321 (485)
Q Consensus 262 Wdi~t-G~~L~t---l~~----------~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~--~~~--~-l~gh~~ 321 (485)
+++.. |++... +.+ -..+.-.|.|. |++..+++.. ....|.++++.... +.. . -.....
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 99976 665543 211 12334578886 7888888874 45589999998654 322 1 123455
Q ss_pred ceEEEEEcCCCcEEEEEe--CCcEEEEeCC---CcE--EEEeecCC-CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 322 TPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s--D~TIklWd~~---G~l--l~tl~gH~-~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
.++-++|+|||+++-... +++|.++++. |++ +++..-.. .+........|++||||++|..+...
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------- 265 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------- 265 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-------
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-------
Confidence 799999999999876555 9999999984 432 33332110 11111126789999999999887762
Q ss_pred cCCCCeEEEEeC--CCCeE--EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC
Q 011452 394 EGNAGSINISNI--LTGKC--LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN 469 (485)
Q Consensus 394 ~~~DgtIklWdl--~TGk~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~ 469 (485)
.++|-++++ .+|+. +..+...- ..-+.++|+|||+
T Consensus 266 ---~~sI~vf~~d~~~g~l~~~~~~~~~G--------------------------------------~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 266 ---SNSISVFDLDPATGTLTLVQTVPTGG--------------------------------------KFPRHFAFSPDGR 304 (345)
T ss_dssp ---TTEEEEEEECTTTTTEEEEEEEEESS--------------------------------------SSEEEEEE-TTSS
T ss_pred ---CCEEEEEEEecCCCceEEEEEEeCCC--------------------------------------CCccEEEEeCCCC
Confidence 689999998 34543 22221110 1467899999999
Q ss_pred EEEEec-CCCcEEEcc
Q 011452 470 EIYTGN-RHGLVHVWS 484 (485)
Q Consensus 470 ~LaSgs-~DgtVklWd 484 (485)
+|+.++ .+++|.+++
T Consensus 305 ~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFD 320 (345)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCeEEEEE
Confidence 999887 567888875
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.26 E-value=7.2e-10 Score=126.40 Aligned_cols=242 Identities=13% Similarity=0.071 Sum_probs=153.6
Q ss_pred cccceEEEEEe---cCEEEEEeCCCeEEeeeccc-------CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCc
Q 011452 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRET-------NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFS 163 (485)
Q Consensus 94 ~~s~V~~i~~s---~~~ias~s~dgtiklW~~~t-------G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~s 163 (485)
|++.|..++.+ +.+++++|.|||||+||... -+..+|... -...+..|.+-++|+++|.++.|
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t~D------ 1119 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVSTKD------ 1119 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEcCC------
Confidence 77888999988 58999999999999999652 223444443 45579999999999999987543
Q ss_pred ccceeEEEEeEecc--CCc-Ccccce-eee-ccccCceEEEEeCCCCe-EEEEeeCCCcEEEeecCCCeEEEEEc----C
Q 011452 164 SLRCRSTRIEYIRR--GKP-DAGFAL-FES-ESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS----D 233 (485)
Q Consensus 164 tL~~~t~~lw~i~~--G~~-~~~~~l-f~~-~~~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~~g~~l~tl~----~ 233 (485)
+.+.+-.|.. ++. ...+.. -.. ..-..+.--+|....+. .|+++-.-+-|-.||+..-.-+.+++ .
T Consensus 1120 ----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1120 ----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred ----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 3666655532 111 000000 000 00011111244333444 78899888999999987655444443 4
Q ss_pred CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeec-CCcceeEEEE--EecCCCEEEEE-e-CCCcEEEEEC
Q 011452 234 KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH-LLHRNKKVDF--IEQFNEKLLVK-Q-ENENLQILDV 307 (485)
Q Consensus 234 ~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~-~~~~~~~V~f--~~~~~~~lls~-s-~D~tIkIWDv 307 (485)
..|.+++++| +.+++++.+ . +.+-+||+.=+.++.+..+ +...+..|.. ..+.+...+++ + ..+-|-+|++
T Consensus 1196 G~vTSi~idp~~~WlviGts-~--G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTS-R--GQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred cceeEEEecCCceEEEEecC-C--ceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 5799999999 555555433 3 7899999988877776652 2233444443 33434566665 4 7899999999
Q ss_pred CCCeeEEecccCCC-------------------ceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 308 RNFELTEVSRTEFM-------------------TPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 308 ~tg~~~~~l~gh~~-------------------~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
.+|.+..++..-.. ......+..-+..+++|+ |..|+.||..
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 99998888743311 111122223344566666 9999999985
No 237
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.24 E-value=2.1e-09 Score=108.76 Aligned_cols=229 Identities=14% Similarity=0.166 Sum_probs=154.1
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cC--CcEEEEEEcCCceEEEEEcCC---CCeeEEEEecCCCeE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SD--KNVQEIKISPGIMLLIFTKAS---GHVPLKILSIEDGTV 269 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~--~~V~~VafSpg~~ll~sss~~---~D~tIklWdi~tG~~ 269 (485)
.|+|. .|.--.+ .+.|.=+|+++.+..++..+- .+ -.+.+.-|--+-..++.+... .-+.|-|||=...++
T Consensus 10 svs~N-QD~ScFa-va~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~ 87 (346)
T KOG2111|consen 10 SVSFN-QDHSCFA-VATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC 87 (346)
T ss_pred EEEEc-cCCceEE-EEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence 58886 4554444 456777999998875543222 11 122222222222223321110 115788999888888
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeeEEecccCCC--ceEEEEEcCCCcEEEEEe--CCcEE
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NFELTEVSRTEFM--TPSAFIFLYENQLFLTFR--NRTVA 344 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~-tg~~~~~l~gh~~--~v~avaFspdg~llaS~s--D~TIk 344 (485)
+.+|.- ...|.+|.+. .++|++- -.+.|.+|... +-+.++.+..-.+ ..-++.=.-+..+||-=+ -|.|+
T Consensus 88 i~el~f-~~~I~~V~l~---r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 88 IIELSF-NSEIKAVKLR---RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EEEEEe-ccceeeEEEc---CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 888873 3678888875 3455554 67899999987 4455555433221 122222233444454334 78999
Q ss_pred EEeCC-CcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe-EEEEeCCCCeEEEEecCCCCC
Q 011452 345 VWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS-INISNILTGKCLAKIRASNGL 420 (485)
Q Consensus 345 lWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt-IklWdl~TGk~l~tl~gH~~~ 420 (485)
|=|+. -+. -.....|... |..|+++-+|.+|||+|. .|| |||||..+|+.++.++--.+
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaSt-----------kGTLIRIFdt~~g~~l~E~RRG~d- 225 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATAST-----------KGTLIRIFDTEDGTLLQELRRGVD- 225 (346)
T ss_pred EEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEecc-----------CcEEEEEEEcCCCcEeeeeecCCc-
Confidence 99985 333 2678899877 999999999999999997 576 89999999999999976442
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+ ..|++++||||+++||.+|..||||+..
T Consensus 226 ---------------------~--------------A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 226 ---------------------R--------------ADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred ---------------------h--------------heEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 1 2899999999999999999999999975
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=124.17 Aligned_cols=124 Identities=11% Similarity=0.184 Sum_probs=94.4
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECCCC--------------eeEEec--cc------------CCCceEEEEEcC
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNF--------------ELTEVS--RT------------EFMTPSAFIFLY 330 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg--------------~~~~~l--~g------------h~~~v~avaFsp 330 (485)
.+..+.|.+-++.+++++-.++.+-++|...- ....++ .. -...|+.++|||
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~ 300 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP 300 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC
Confidence 45577777767778888889999999875321 111111 11 134789999999
Q ss_pred CCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 331 ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 331 dg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
||+.||+-| |+.+||.|+. -+|+-.+.--- +....|+|||||+||++|++ |.-|-||.+..+
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-----GGLLCvcWSPDGKyIvtGGE-----------DDLVtVwSf~er 364 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-----GGLLCVCWSPDGKYIVTGGE-----------DDLVTVWSFEER 364 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHHHHHHHhhc-----cceEEEEEcCCccEEEecCC-----------cceEEEEEeccc
Confidence 999999999 9999999997 55555443221 22678999999999999987 689999999999
Q ss_pred eEEEEecCCC
Q 011452 409 KCLAKIRASN 418 (485)
Q Consensus 409 k~l~tl~gH~ 418 (485)
+.++-=+||.
T Consensus 365 RVVARGqGHk 374 (636)
T KOG2394|consen 365 RVVARGQGHK 374 (636)
T ss_pred eEEEeccccc
Confidence 9999888886
No 239
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.22 E-value=4.7e-10 Score=112.45 Aligned_cols=196 Identities=15% Similarity=0.186 Sum_probs=137.6
Q ss_pred cEEEEEEcCCc-----eEEEEEcCCCCeeEEEEecC--CCeEE--EEee-----cCCcceeEEEEEecCCCEEEEEeCCC
Q 011452 235 NVQEIKISPGI-----MLLIFTKASGHVPLKILSIE--DGTVL--KSFN-----HLLHRNKKVDFIEQFNEKLLVKQENE 300 (485)
Q Consensus 235 ~V~~VafSpg~-----~ll~sss~~~D~tIklWdi~--tG~~L--~tl~-----~~~~~~~~V~f~~~~~~~lls~s~D~ 300 (485)
++..+-|.|+. .||++++ ..+|||.+. .++.. ..|+ .+-....+.+|.+.+...+.++|-|-
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CccceEecCCccccCcchhhccc----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 55566666644 2343322 267777765 22221 1111 23345567778777788888899999
Q ss_pred cEEEEECCCCee---EEecccCCCceEEEEEcCCC-cEEEEEe-CCcEEEEeCC-CcEEE-EeecCCCCCCCCCeeEEEE
Q 011452 301 NLQILDVRNFEL---TEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYI 373 (485)
Q Consensus 301 tIkIWDv~tg~~---~~~l~gh~~~v~avaFspdg-~llaS~s-D~TIklWd~~-G~ll~-tl~gH~~~~~~~~v~svaf 373 (485)
|.-|||+++|.. ...|-.|...|..++|+-++ +.|||.+ ||.||+.|++ -+--+ .+|+-...++ ..-+++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p---LlRLsw 250 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP---LLRLSW 250 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc---ceeecc
Confidence 999999999733 55577899999999999865 5788889 9999999996 33222 2333321111 344666
Q ss_pred CC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccc
Q 011452 374 TS-DQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRST 451 (485)
Q Consensus 374 Sp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (485)
++ |-.++|+-.++ ...|-|-|+.- +..++.|++|+.
T Consensus 251 nkqDpnymATf~~d----------S~~V~iLDiR~P~tpva~L~~H~a-------------------------------- 288 (364)
T KOG0290|consen 251 NKQDPNYMATFAMD----------SNKVVILDIRVPCTPVARLRNHQA-------------------------------- 288 (364)
T ss_pred CcCCchHHhhhhcC----------CceEEEEEecCCCcceehhhcCcc--------------------------------
Confidence 55 45677777662 46788999864 667899999983
Q ss_pred hhcccCCeEEEEEcCCC-CEEEEecCCCcEEEccC
Q 011452 452 VAEALEDITALFYDEDR-NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 452 ~~~~l~~V~sl~fspDg-~~LaSgs~DgtVklWd~ 485 (485)
.|.+++|.|.. +.|.|++.|..+-+||+
T Consensus 289 ------~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 289 ------SVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred ------cccceEecCCCCceeeecCCcceEEEEec
Confidence 89999999976 56999999999999995
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=2.2e-09 Score=115.15 Aligned_cols=271 Identities=15% Similarity=0.162 Sum_probs=185.7
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccC--ceEEEEeCCCCeEEEEee
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW--PGFVEFDDVNGKVLTYSA 212 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~--~~~V~Fs~pnG~~Las~s 212 (485)
+..+-..|-.+|||++|..++.|. -.|+++|+..=-+ -|+- ++.. +.+.-.+ .|=.-++.--
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YK---------P~ikvydlanLSL-----KFER-hlDae~V~feiLs-DD~SK~v~L~ 113 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYK---------PQIKVYDLANLSL-----KFER-HLDAEVVDFEILS-DDYSKSVFLQ 113 (703)
T ss_pred CccccceeEecCCCcEEEEecccC---------CceEEEEccccee-----eeee-cccccceeEEEec-cchhhheEee
Confidence 556788999999999998877765 4778888632221 1332 2211 1122223 1222233334
Q ss_pred CCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 213 QDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l~tl~-~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
.|++|-+=. +.|. -|++. ...-.+++.+ |.--|+..+++ ..|.-.+++.|.-|..|....+.++.|..+ +-.
T Consensus 114 ~DR~IefHa-k~G~-hy~~RIP~~GRDm~y~~~scDly~~gsg---~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~~h 187 (703)
T KOG2321|consen 114 NDRTIEFHA-KYGR-HYRTRIPKFGRDMKYHKPSCDLYLVGSG---SEVYRLNLEQGRFLNPFETDSGELNVVSIN-EEH 187 (703)
T ss_pred cCceeeehh-hcCe-eeeeecCcCCccccccCCCccEEEeecC---cceEEEEccccccccccccccccceeeeec-Ccc
Confidence 577774433 1222 12221 1234567777 64444444444 368889999999999999777888888876 456
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEecc------cCC-----CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEee
Q 011452 291 EKLLVKQENENLQILDVRNFELTEVSR------TEF-----MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 357 (485)
Q Consensus 291 ~~lls~s~D~tIkIWDv~tg~~~~~l~------gh~-----~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~ 357 (485)
+.|++|.+|+.|..||.++.....++. .|. ..|+++.|+.||=.++.|. +|.|-|+|++ -+.+ -..
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-~~k 266 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-LVK 266 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-eec
Confidence 777778899999999999876655542 222 3499999999999999998 9999999997 4433 235
Q ss_pred cCCCCCCCCCeeEEEECCC--CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCC
Q 011452 358 DHLLWHPDCNTNNIYITSD--QDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpD--G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
+|... -.+..+.|-+. +..|+|.. ...+||||-.||+..+.+..-.
T Consensus 267 dh~~e---~pi~~l~~~~~~~q~~v~S~D------------k~~~kiWd~~~Gk~~asiEpt~----------------- 314 (703)
T KOG2321|consen 267 DHGYE---LPIKKLDWQDTDQQNKVVSMD------------KRILKIWDECTGKPMASIEPTS----------------- 314 (703)
T ss_pred ccCCc---cceeeecccccCCCceEEecc------------hHHhhhcccccCCceeeccccC-----------------
Confidence 56543 22778888665 77888864 3789999999999998887643
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
.|..++|=|++-++.+|.++..++-
T Consensus 315 ----------------------~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 315 ----------------------DLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ----------------------CcCceeeecCCceEEEecCCCccee
Confidence 5667889999999999998887654
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=5.5e-10 Score=119.72 Aligned_cols=205 Identities=11% Similarity=0.143 Sum_probs=147.3
Q ss_pred CCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe-EEEEeecCCcce
Q 011452 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT-VLKSFNHLLHRN 280 (485)
Q Consensus 202 ~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~-~L~tl~~~~~~~ 280 (485)
||-+.++|++..||-+|+||..++++...+. |...+ ++-++--.|.+.-+. +++...- .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~----------p~~~~------s~t~~~~~w~L~~~~s~~k~~~~--~-- 61 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFA----------PIASL------SGTCTYTKWGLSADYSPMKWLSL--E-- 61 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeec----------cchhc------cCcceeEEEEEEeccchHHHHhH--H--
Confidence 4668899999999999999998887655542 21111 111344444422111 1111110 0
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc--cCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~--gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
+...- ..+-..++-|-..|.|.++++..|+....+. .|...|+++-...+-..|=|++ |..|-.|++. +..+..+
T Consensus 62 ~~~~~-s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 62 KAKKA-SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred HHhhc-cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee
Confidence 00000 1111222335588999999999999988775 6999999999899999999999 9999999996 8889888
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
.+...- +.+++++|||+.|+++| ++|++||++|+|.+.+|.||..
T Consensus 141 ~~~~~~-----~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv~~ftgh~s----------------- 185 (541)
T KOG4547|consen 141 KEQKPL-----VSSLCISPDGKILLTAS-------------RQIKVLDIETKEVVITFTGHGS----------------- 185 (541)
T ss_pred ccCCCc-----cceEEEcCCCCEEEecc-------------ceEEEEEccCceEEEEecCCCc-----------------
Confidence 877655 89999999999999997 6899999999999999999973
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCC-----CCEEE-EecCCCcEEEc
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDED-----RNEIY-TGNRHGLVHVW 483 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD-----g~~La-Sgs~DgtVklW 483 (485)
.|++++|-.+ |..+. ++..+.-+-+|
T Consensus 186 ---------------------~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 186 ---------------------PVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ---------------------ceEEEEEEEeccccccceeeeccccccceeEE
Confidence 8999999888 65544 44444445555
No 242
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=5.8e-09 Score=111.60 Aligned_cols=310 Identities=17% Similarity=0.265 Sum_probs=209.7
Q ss_pred EEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCc----ccceeEEEEeE
Q 011452 101 IVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFS----SLRCRSTRIEY 174 (485)
Q Consensus 101 i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~s----tL~~~t~~lw~ 174 (485)
|.+| |.+|++--.-| |.||--+.-.+++ ..+|. .|.-+.|||+-++|+|=|. .... --.++.+.|||
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~--RF~Hp-~Vq~idfSP~EkYLVT~s~---~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQ--RFYHP-GVQFIDFSPNEKYLVTYSP---EPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHH--hccCC-CceeeecCCccceEEEecC---CccccCcccCCCceEEEEE
Confidence 5566 88888876555 6799744333443 23465 4899999999999998553 1100 11347899999
Q ss_pred eccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE--EEEcCCcEEEEEEcCCceEEEE-E
Q 011452 175 IRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIKISPGIMLLIF-T 251 (485)
Q Consensus 175 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l--~tl~~~~V~~VafSpg~~ll~s-s 251 (485)
|++|.+..+++.+......|| .+.+| .|+|++|--.. .+|-|++...-.++ .++.-..|....|||...++++ .
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP-~frWS-~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWP-IFRWS-HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred ccccchhcceeccCCCccccc-eEEec-cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 999999888888877677777 56787 68999997665 57889886553322 3444568999999996666555 3
Q ss_pred cCCCC--eeEEEEecCCCeEEEEeecCCccee--EEEEEecCCCEEEEEeC----C------CcEEEEECCCCee-EEec
Q 011452 252 KASGH--VPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVKQE----N------ENLQILDVRNFEL-TEVS 316 (485)
Q Consensus 252 s~~~D--~tIklWdi~tG~~L~tl~~~~~~~~--~V~f~~~~~~~lls~s~----D------~tIkIWDv~tg~~-~~~l 316 (485)
....+ -++-|-.+.+++.|++-+- .+|. .+.|- -.|++|.+.-+ - -++.|.-++.... +...
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nl--fnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v 442 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNL--FNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV 442 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccc--eeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence 33333 3567889999999998874 3454 44442 34667766421 1 2455665554332 2222
Q ss_pred ccCCCceEEEEEcCCCcEEEEEe----CCcEEEEeCC-----CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCC
Q 011452 317 RTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (485)
Q Consensus 317 ~gh~~~v~avaFspdg~llaS~s----D~TIklWd~~-----G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~ 387 (485)
.-...|-+|+|-|.|..|+.-+ -.||..+.++ -+++..|+.-. .|.|.|||.|++++-+..
T Consensus 443 -elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-------~N~vfwsPkG~fvvva~l-- 512 (698)
T KOG2314|consen 443 -ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-------ANTVFWSPKGRFVVVAAL-- 512 (698)
T ss_pred -ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-------cceEEEcCCCcEEEEEEe--
Confidence 2345788999999999998765 3589999874 23677787633 579999999999999886
Q ss_pred CCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCC
Q 011452 388 SDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDED 467 (485)
Q Consensus 388 ~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD 467 (485)
.|.-|.+...|..-..|.. .+|.. |. .-+-+.++|.
T Consensus 513 ------~s~~g~l~F~D~~~a~~k~--~~~~e----------------------h~--------------~at~veWDPt 548 (698)
T KOG2314|consen 513 ------VSRRGDLEFYDTDYADLKD--TASPE----------------------HF--------------AATEVEWDPT 548 (698)
T ss_pred ------cccccceEEEecchhhhhh--ccCcc----------------------cc--------------ccccceECCC
Confidence 4566889999875333322 22221 10 3345889999
Q ss_pred CCEEEEecCC
Q 011452 468 RNEIYTGNRH 477 (485)
Q Consensus 468 g~~LaSgs~D 477 (485)
|++++|+|.-
T Consensus 549 GRYvvT~ss~ 558 (698)
T KOG2314|consen 549 GRYVVTSSSS 558 (698)
T ss_pred CCEEEEeeeh
Confidence 9999999853
No 243
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.17 E-value=3.3e-09 Score=107.28 Aligned_cols=175 Identities=10% Similarity=0.179 Sum_probs=132.1
Q ss_pred CCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC-CCeEEEEeecCCcceeEEEEEecCCC
Q 011452 214 DSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~-tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
-+.+-|||=..+.++.++. ...|.+|.++++...++- .+.|+||... +-+.+..+..-..+..-.+..+-.+.
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl-----~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVL-----ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred CceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEe-----cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 3678899966677888887 568999999998776654 2699999987 55666766543223222333222234
Q ss_pred EEEEE-e-CCCcEEEEECCCCee--EEecccCCCceEEEEEcCCCcEEEEEe-CC-cEEEEeCC-CcEEEEeecCCCCCC
Q 011452 292 KLLVK-Q-ENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFR-GELVTSFEDHLLWHP 364 (485)
Q Consensus 292 ~lls~-s-~D~tIkIWDv~tg~~--~~~l~gh~~~v~avaFspdg~llaS~s-D~-TIklWd~~-G~ll~tl~gH~~~~~ 364 (485)
.+|+- | .=|.|||-|+..-+. ..+...|...|.+++.+-+|.++||+| .| -|||||.+ |++++.|.--...
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~-- 226 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR-- 226 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch--
Confidence 44442 4 559999999987665 366779999999999999999999999 77 58999996 9999988632221
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
..+..|+||||.++||.+|+ .|||.|+.+..
T Consensus 227 -A~iy~iaFSp~~s~LavsSd-----------KgTlHiF~l~~ 257 (346)
T KOG2111|consen 227 -ADIYCIAFSPNSSWLAVSSD-----------KGTLHIFSLRD 257 (346)
T ss_pred -heEEEEEeCCCccEEEEEcC-----------CCeEEEEEeec
Confidence 22899999999999999986 69999998763
No 244
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=2.1e-10 Score=122.29 Aligned_cols=233 Identities=17% Similarity=0.148 Sum_probs=151.0
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeC-CCCeEE
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD-VNGKVL 208 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~-pnG~~L 208 (485)
.|.| |.+-|+++.||.||..|||+| || ..+-|||.-.-|+ ..+..++|..-+.+|.|=| .+..++
T Consensus 45 eL~G-H~GCVN~LeWn~dG~lL~SGS----DD------~r~ivWd~~~~Kl---lhsI~TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 45 ELTG-HTGCVNCLEWNADGELLASGS----DD------TRLIVWDPFEYKL---LHSISTGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhcc-ccceecceeecCCCCEEeecC----Cc------ceEEeecchhcce---eeeeecccccceeEEeeeccCCCeEE
Confidence 4666 999999999999999999955 77 7888999876666 2244556777788899953 256889
Q ss_pred EEeeCCCcEEEeecCCCe---E----E-----EEEcCCcEEEEEEcCCc--eEEEEEcCCCCeeEEEEecCC-------C
Q 011452 209 TYSAQDSIYKVFDLKNYT---M----L-----YSISDKNVQEIKISPGI--MLLIFTKASGHVPLKILSIED-------G 267 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g~---~----l-----~tl~~~~V~~VafSpg~--~ll~sss~~~D~tIklWdi~t-------G 267 (485)
+||+.|+.|||+|+..-+ + . +.-|...|.-||-.|++ ...+ + +.|+||+-.|+.. +
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfws-a--sEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS-A--SEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEE-e--cCCcceeeecccCCccCCccc
Confidence 999999999999997421 1 1 11234578889988866 3333 2 4569999999864 2
Q ss_pred eEEEEe---ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEecccCCCce----EEEE-EcCCCcEEEEE
Q 011452 268 TVLKSF---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTP----SAFI-FLYENQLFLTF 338 (485)
Q Consensus 268 ~~L~tl---~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-~~~~l~gh~~~v----~ava-Fspdg~llaS~ 338 (485)
.+...+ ...+-..++++.+|..+.+|++|+.|--.||+|.+.-. ....-..|...+ .+|. |+|++-
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----- 262 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----- 262 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc-----
Confidence 222222 12122345788888888999999999999999965221 111111122111 1332 555542
Q ss_pred eCCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCC-CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 339 RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 339 sD~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG-~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
-+.+|.+..-. . | ..-+.|+|+| .+|+|.+. .-|.|+|+..++-..
T Consensus 263 -------kn~~gn~~~~~---~-----~-~t~vtfnpNGtElLvs~~g------------EhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 263 -------KNSQGNLDRYI---T-----C-CTYVTFNPNGTELLVSWGG------------EHVYLFDVNEDKSPT 309 (758)
T ss_pred -------cCcccccccce---e-----e-eEEEEECCCCcEEEEeeCC------------eEEEEEeecCCCCce
Confidence 11122221111 1 1 4568999998 56777764 579999998777543
No 245
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=1.9e-09 Score=110.58 Aligned_cols=175 Identities=10% Similarity=0.099 Sum_probs=124.8
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE---cCCcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCC-Ce--
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---SDKNVQEIKISP--GIMLLIFTKASGHVPLKILSIED-GT-- 268 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl---~~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~t-G~-- 268 (485)
.|++. +.=--+|.+..|-+||++|-+. ++.-.| .+.+|.++||-| +..+++++. .-|-||.... +.
T Consensus 103 ~~aWh-qH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr----~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 103 GVAWH-QHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR----AGICIWSDSRTLNAN 176 (445)
T ss_pred eEeec-hhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec----ceeEEEEcCcccccc
Confidence 56775 4444467788999999999544 654444 467999999998 666777655 3689997532 11
Q ss_pred ---------EEEEee--cCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEE
Q 011452 269 ---------VLKSFN--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFL 336 (485)
Q Consensus 269 ---------~L~tl~--~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~lla 336 (485)
++..|+ || ..|.++++. +|+..|++++ .|..|.|||+.+|.++-...---+.++-+.|||||..|.
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn-~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWN-EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEc-CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 112222 33 346688886 6788888887 889999999999988766544455778899999999999
Q ss_pred EEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 337 TFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 337 S~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.++ |++.+||+.+ -...+=..+. +.|...++||+|.+|.-.+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgs------grvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGS------GRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred EecccceeeeehhcccceecceeccC------CceeeeeecCCCCEEEEEEc
Confidence 999 9999999763 2222211121 12889999999998877664
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-09 Score=111.18 Aligned_cols=249 Identities=13% Similarity=0.173 Sum_probs=162.1
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecC-CCe----EEEEE--c------------CCcEEEEEEcCCc---eEEEEEc
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYT----MLYSI--S------------DKNVQEIKISPGI---MLLIFTK 252 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~-~g~----~l~tl--~------------~~~V~~VafSpg~---~ll~sss 252 (485)
+..|+|+ ..|.+||+|..+|-|-++.-. .++ ...++ | ...|..|.+.+++ ..+.+
T Consensus 28 is~vef~-~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls-- 104 (433)
T KOG1354|consen 28 ISAVEFD-HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS-- 104 (433)
T ss_pred eeeEEee-cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe--
Confidence 4579998 699999999999999888643 221 11222 1 1368889998522 22222
Q ss_pred CCCCeeEEEEecCCCeEE-----------------------------------EEe-ecCCcceeEEEEEecCCCEEEEE
Q 011452 253 ASGHVPLKILSIEDGTVL-----------------------------------KSF-NHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 253 ~~~D~tIklWdi~tG~~L-----------------------------------~tl-~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
..|+|||+|-+.....- +.+ +.|.-++.++.+. .|.+.++ +
T Consensus 105 -tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~l-S 181 (433)
T KOG1354|consen 105 -TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFL-S 181 (433)
T ss_pred -cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEe-e
Confidence 35699999987542211 122 2577788899986 3455555 4
Q ss_pred eCCCcEEEEECCC-Cee--EEecccCCC-----ceEEEEEcCC-CcEEEEEe-CCcEEEEeCC-Cc-EE---EEeecCCC
Q 011452 297 QENENLQILDVRN-FEL--TEVSRTEFM-----TPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GE-LV---TSFEDHLL 361 (485)
Q Consensus 297 s~D~tIkIWDv~t-g~~--~~~l~gh~~-----~v~avaFspd-g~llaS~s-D~TIklWd~~-G~-ll---~tl~gH~~ 361 (485)
.+|=-|.||+++- .++ +--.+.|.+ -|++.-|+|. ..+|+-++ -|+|+|-|++ .. |. ..|+.-..
T Consensus 182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 5899999999872 222 222344433 5677779885 45666666 9999999996 22 22 23332222
Q ss_pred CCCC-------CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC-CCCeEEEEecCCCCCCCCcccccCCCCC
Q 011452 362 WHPD-------CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI-LTGKCLAKIRASNGLPAENECSCSGDYS 433 (485)
Q Consensus 362 ~~~~-------~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl-~TGk~l~tl~gH~~~~~~~~~~~~~~~~ 433 (485)
+.+- ..|..|-||++|.||+|-.- -||||||+ ...+.+.+++-|....
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy------------ltvk~wD~nme~~pv~t~~vh~~lr------------ 317 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY------------LTVKLWDLNMEAKPVETYPVHEYLR------------ 317 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc------------ceeEEEeccccCCcceEEeehHhHH------------
Confidence 1100 23788999999999999653 89999999 7788999999997410
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.-+|..- ...+.-+=..++||-++..+.|||..+.+|+.+
T Consensus 318 ~kLc~lY-----------EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 318 SKLCSLY-----------ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHHh-----------hccchhheeEEEEcCCcceEecccccceEEEec
Confidence 0011100 001111335689999999999999999999876
No 247
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=5.2e-09 Score=108.09 Aligned_cols=224 Identities=15% Similarity=0.150 Sum_probs=160.1
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEE------c--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe----EE
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSI------S--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT----VL 270 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl------~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~----~L 270 (485)
+++++|.-.+.|..+...+.....+.-.+ + ...|-..+-.+| +|+++- +++-+.+|.++.|- .|
T Consensus 67 ~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-~Litc~---~sG~l~~~~~k~~d~hss~l 142 (412)
T KOG3881|consen 67 GETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-TLITCV---SSGNLQVRHDKSGDLHSSKL 142 (412)
T ss_pred CceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-EEEEEe---cCCcEEEEeccCCccccccc
Confidence 45667777777777777776655544332 1 245666666554 555442 23789999998443 23
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCC--CcEEEEECCCCeeEEeccc---------CCCceEEEEEcCC--CcEEEE
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNFELTEVSRT---------EFMTPSAFIFLYE--NQLFLT 337 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D--~tIkIWDv~tg~~~~~l~g---------h~~~v~avaFspd--g~llaS 337 (485)
..+.-+ ..+..|.-.+.+...+++|+.. ..++|||+++.+.+-.-.- -.-|+.++.|.|. .+.||+
T Consensus 143 ~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat 221 (412)
T KOG3881|consen 143 IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFAT 221 (412)
T ss_pred eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEE
Confidence 333322 2333343333445566668877 8999999998843322110 1237788999999 999999
Q ss_pred Ee-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE-
Q 011452 338 FR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK- 413 (485)
Q Consensus 338 ~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t- 413 (485)
+. -+.+++||.+ .+.+..|.--... +.++...|+|.+|..|.. -+-+..+|+.+|+.+..
T Consensus 222 ~T~~hqvR~YDt~~qRRPV~~fd~~E~~-----is~~~l~p~gn~Iy~gn~-----------~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 222 ITRYHQVRLYDTRHQRRPVAQFDFLENP-----ISSTGLTPSGNFIYTGNT-----------KGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred EecceeEEEecCcccCcceeEeccccCc-----ceeeeecCCCcEEEEecc-----------cchhheecccCceeeccc
Confidence 99 9999999995 5577777654444 899999999999999876 58899999999998766
Q ss_pred ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 414 IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 414 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.|-. +.|++|-.+|.++.|||++-|..|||.|.
T Consensus 286 ~kg~t--------------------------------------Gsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 286 LKGIT--------------------------------------GSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cCCcc--------------------------------------CCcceEEEcCCCceEEeeccceeEEEeec
Confidence 66655 28899999999999999999999999874
No 248
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.6e-09 Score=114.41 Aligned_cols=241 Identities=17% Similarity=0.206 Sum_probs=171.2
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC---CceEEEEEcCCCCeeEEEEe-c
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISP---GIMLLIFTKASGHVPLKILS-I 264 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafSp---g~~ll~sss~~~D~tIklWd-i 264 (485)
.+-+..|.|. ..|..|+|+|.|..|-|||+..++....+. ..+|-.-+|=| +..++.+ + .|+.+++=. +
T Consensus 142 ~GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~-s--~dgqvr~s~i~ 217 (559)
T KOG1334|consen 142 KGCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS-S--RDGQVRVSEIL 217 (559)
T ss_pred CCccceeeec-ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec-c--ccCceeeeeec
Confidence 3445578997 799999999999999999999998777774 34666666665 6666554 3 346777654 3
Q ss_pred CCCeEEE--EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec---ccCCC---ceEEEEEcCCCc-EE
Q 011452 265 EDGTVLK--SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS---RTEFM---TPSAFIFLYENQ-LF 335 (485)
Q Consensus 265 ~tG~~L~--tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l---~gh~~---~v~avaFspdg~-ll 335 (485)
++|.+.+ .+.-|.+++..++..+.....++++++|+.++=.|++++.....+ ..+.. ..++++..|-+. +|
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEF 297 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccc
Confidence 4677764 455778889999986655778899999999999999987654433 23443 677888888777 78
Q ss_pred EEEe-CCcEEEEeCC---Cc----EEEEeecCCC-CCCCCCeeEEEEC-CCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 336 LTFR-NRTVAVWNFR---GE----LVTSFEDHLL-WHPDCNTNNIYIT-SDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 336 aS~s-D~TIklWd~~---G~----ll~tl~gH~~-~~~~~~v~svafS-pDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+++. |.-++++|.+ .+ .+.+|.-|.+ ......|..++|| ..+.+||||. |--|.|++-
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn------------De~IYLF~~ 365 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN------------DEDIYLFNK 365 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec------------ccceEEecc
Confidence 8888 9999999963 33 2344443333 2223458999999 5568889887 466888753
Q ss_pred C--CC----------eEEEE-ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEE-EEEcCCCCEE
Q 011452 406 L--TG----------KCLAK-IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITA-LFYDEDRNEI 471 (485)
Q Consensus 406 ~--TG----------k~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s-l~fspDg~~L 471 (485)
. -| +.+.. ++||.+ .. .|-. =+|-|...++
T Consensus 366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN-------------------------~~-----------TVKgVNFfGPrsEyV 409 (559)
T KOG1334|consen 366 SMGDGSEPDPSSPREQYVKRVYKGHRN-------------------------SR-----------TVKGVNFFGPRSEYV 409 (559)
T ss_pred ccccCCCCCCCcchhhccchhhccccc-------------------------cc-----------ccceeeeccCccceE
Confidence 2 13 22333 556653 21 2333 2789999999
Q ss_pred EEecCCCcEEEcc
Q 011452 472 YTGNRHGLVHVWS 484 (485)
Q Consensus 472 aSgs~DgtVklWd 484 (485)
+|||.=|-|-+|+
T Consensus 410 vSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 410 VSGSDCGHIFIWD 422 (559)
T ss_pred EecCccceEEEEe
Confidence 9999999999997
No 249
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=2.2e-09 Score=114.66 Aligned_cols=161 Identities=11% Similarity=0.065 Sum_probs=121.1
Q ss_pred cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCC
Q 011452 232 SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN 309 (485)
Q Consensus 232 ~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~t 309 (485)
|..-|++++++.+|++|+++|+ |.-+-|||.-.-|++..+. ||+..+++|.|.|-.+..+++ +..|.-|+|+|+..
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSD--D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSD--DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccceecceeecCCCCEEeecCC--cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 4457999999988888887654 5889999999889998885 999999999999776665555 57999999999985
Q ss_pred C----------eeEEecccCCCceEEEEEcCCC-cEEEEEe-CCcEEEEeCC--CcEEEEeecCCC---CCC-CCCeeEE
Q 011452 310 F----------ELTEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GELVTSFEDHLL---WHP-DCNTNNI 371 (485)
Q Consensus 310 g----------~~~~~l~gh~~~v~avaFspdg-~llaS~s-D~TIklWd~~--G~ll~tl~gH~~---~~~-~~~v~sv 371 (485)
. +.+....-|+..|..+|--|++ ..|-|++ ||||+-+|++ -.|-.....|.. .++ .-....+
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence 2 2333345699999999999999 8999999 9999999985 233333222211 000 0125678
Q ss_pred EECCC-CCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 372 YITSD-QDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 372 afSpD-G~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.+||. -.+||-|+. |--.+|+|.
T Consensus 207 tisp~rp~~laVGgs-----------dpfarLYD~ 230 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGS-----------DPFARLYDR 230 (758)
T ss_pred eecCCCCceEEecCC-----------Cchhhhhhh
Confidence 89995 467777654 678899984
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.8e-08 Score=104.21 Aligned_cols=248 Identities=16% Similarity=0.112 Sum_probs=164.9
Q ss_pred cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc----Cc--ccceeeeccccCceEEEEeCCCCeEEE
Q 011452 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP----DA--GFALFESESLKWPGFVEFDDVNGKVLT 209 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~----~~--~~~lf~~~~~~~~~~V~Fs~pnG~~La 209 (485)
...|.+++|..|+++=+.....+.+ .+....+..+.+ ++ +..+++ +.+...+- .||.+++
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~--------~~~~~~~~E~~~~s~~~~~~~~~l~~----~~I~gl~~--~dg~Lit 120 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADD--------DLPKFVIEEFEISSSLDDAKTVSLGT----KSIKGLKL--ADGTLIT 120 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCc--------ccccccccCCcccccccccccccccc----ccccchhh--cCCEEEE
Confidence 3468888888887764443322222 333333322222 11 011111 22224444 4787655
Q ss_pred EeeCCCcEEEeecCCCe----EEEEE-cCCcEEEEEEcCCceE-EEEEcCCCCeeEEEEecCCCeEEEEeec-------C
Q 011452 210 YSAQDSIYKVFDLKNYT----MLYSI-SDKNVQEIKISPGIML-LIFTKASGHVPLKILSIEDGTVLKSFNH-------L 276 (485)
Q Consensus 210 s~s~D~tiKlWdl~~g~----~l~tl-~~~~V~~VafSpg~~l-l~sss~~~D~tIklWdi~tG~~L~tl~~-------~ 276 (485)
|-.+|.+.+|..+.+. .+..+ .+..+..|.-+|...- .++++...-.-++|||+++++.+.+-+- .
T Consensus 121 -c~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 121 -CVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred -EecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 5669999999998443 23333 2456667777763333 2333322236899999999866554331 1
Q ss_pred Cccee--EEEEEecC-CCEEEEEeCCCcEEEEECCCCe-eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C
Q 011452 277 LHRNK--KVDFIEQF-NEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 350 (485)
Q Consensus 277 ~~~~~--~V~f~~~~-~~~lls~s~D~tIkIWDv~tg~-~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G 350 (485)
-=++| .+.|.+++ ..+++++..=+.+|+||.++++ +...+.--...++++...|.|.++.++. -+.+...|.+ |
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 11233 88898643 4677778899999999999764 4444444456889999999999999999 9999999997 7
Q ss_pred cEEEE-eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 351 ELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 351 ~ll~t-l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+++.. |.|-.+. +++|.-.|.+++|||++- |..+||.|++|-+.+.+.
T Consensus 280 kl~g~~~kg~tGs-----irsih~hp~~~~las~GL-----------DRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 280 KLLGCGLKGITGS-----IRSIHCHPTHPVLASCGL-----------DRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeeccccCCccCC-----cceEEEcCCCceEEeecc-----------ceeEEEeecccchhhhhh
Confidence 77665 8887766 999999999999999987 799999999997766543
No 251
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.99 E-value=3.3e-06 Score=82.24 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=147.2
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE-EEcCCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~-tl~~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~t 272 (485)
+..+.|++.+|.++.+.-..+.|..||.++++... .+.+ ...+++. +++.++++.. ..+.+.|+++|+....
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEET----TCEEEEETTTTEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEc----CceEEEecCCCcEEEE
Confidence 35678885489999998889999999998887543 3333 7888998 8888888754 3466669999966544
Q ss_pred eec-----CCcceeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEE-EE
Q 011452 273 FNH-----LLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFL-TF 338 (485)
Q Consensus 273 l~~-----~~~~~~~V~f~~~~~~~lls~s~D--------~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~lla-S~ 338 (485)
+.. .......+++. ++|...++.... +.|-.++.. ++..... .....++.++|+||++.|. +-
T Consensus 76 ~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEE
T ss_pred eeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecc
Confidence 432 23445588886 555544443322 446667777 6655544 3467899999999998664 55
Q ss_pred e-CCcEEEEeCC--Cc-E-----EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 339 R-NRTVAVWNFR--GE-L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 339 s-D~TIklWd~~--G~-l-----l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
+ .+.|..++++ +. + +..+.+-. ...-.+++.++|.+.++... .+.|.++|.. |+
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----g~pDG~~vD~~G~l~va~~~-----------~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGP-----GYPDGLAVDSDGNLWVADWG-----------GGRIVVFDPD-GK 215 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-----CEEEEEEEBTTS-EEEEEET-----------TTEEEEEETT-SC
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCC-----cCCCcceEcCCCCEEEEEcC-----------CCEEEEECCC-cc
Confidence 6 8888888883 43 2 12222221 11468999999998887654 5899999976 99
Q ss_pred EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEE-cCCCCEEEEe
Q 011452 410 CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFY-DEDRNEIYTG 474 (485)
Q Consensus 410 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~f-spDg~~LaSg 474 (485)
.+..+.-.. ..+++++| -||.++|+-.
T Consensus 216 ~~~~i~~p~--------------------------------------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 216 LLREIELPV--------------------------------------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEE-SS--------------------------------------SSEEEEEEESTTSSEEEEE
T ss_pred EEEEEcCCC--------------------------------------CCEEEEEEECCCCCEEEEE
Confidence 999886542 27899999 5887877644
No 252
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=6.4e-09 Score=107.65 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=93.2
Q ss_pred eEEEEEecCCCEEEE--EeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCC-cEEEEe
Q 011452 281 KKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG-ELVTSF 356 (485)
Q Consensus 281 ~~V~f~~~~~~~lls--~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G-~ll~tl 356 (485)
.++.|...+-.-+++ +++...+.+|.+..+.+...+ ||-..+..|+++||++.++|+. |..||+=...+ --+.+|
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccCcchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 466676433333333 368899999999886666555 8999999999999999999999 99999988753 334443
Q ss_pred -ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 357 -EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 357 -~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
-||... |..++..++ +.|+|+|. |+||++||+.+|+||.++.-
T Consensus 190 clGH~eF-----VS~isl~~~-~~LlS~sG-----------D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 190 CLGHKEF-----VSTISLTDN-YLLLSGSG-----------DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ccccHhh-----eeeeeeccC-ceeeecCC-----------CCcEEEEecccCCcccccch
Confidence 489988 999999876 55899886 79999999999999987743
No 253
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.97 E-value=2.2e-08 Score=102.06 Aligned_cols=317 Identities=16% Similarity=0.174 Sum_probs=195.0
Q ss_pred ccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEE
Q 011452 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLIT 153 (485)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las 153 (485)
+.|+.-.+ .|-|+|. |.+||++++.+. -+-|.+|=|.+. |.-- -+.|--|-+..|...|+.
T Consensus 5 e~fk~~~~---~c~fSp~-------------g~yiAs~~~yrl-viRd~~tlq~~q-lf~c-ldki~yieW~ads~~ilC 65 (447)
T KOG4497|consen 5 ELFKSLNP---FCSFSPC-------------GNYIASLSRYRL-VIRDSETLQLHQ-LFLC-LDKIVYIEWKADSCHILC 65 (447)
T ss_pred HHHHhcCC---ceeECCC-------------CCeeeeeeeeEE-EEeccchhhHHH-HHHH-HHHhhheeeeccceeeee
Confidence 44444444 4555888 999999998843 355555333222 1110 124667778888887776
Q ss_pred EEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC-eEEEEeeCCCcEEEeecCCCeEEEEEc
Q 011452 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 154 ~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG-~~Las~s~D~tiKlWdl~~g~~l~tl~ 232 (485)
+- +. + ..+.+|++.+.+... ++ . +...-..++.+| ||| .+|.++..|--|.||.|.|.++.+.-+
T Consensus 66 ~~-yk-~-------~~vqvwsl~Qpew~c--kI-d-eg~agls~~~WS-PdgrhiL~tseF~lriTVWSL~t~~~~~~~~ 131 (447)
T KOG4497|consen 66 VA-YK-D-------PKVQVWSLVQPEWYC--KI-D-EGQAGLSSISWS-PDGRHILLTSEFDLRITVWSLNTQKGYLLPH 131 (447)
T ss_pred ee-ec-c-------ceEEEEEeecceeEE--Ee-c-cCCCcceeeeEC-CCcceEeeeecceeEEEEEEeccceeEEecc
Confidence 44 22 2 378899986554311 00 1 111223367898 799 778888999999999999877655444
Q ss_pred -CCcEEEEEEcCCceEEEEEcCCCC--eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011452 233 -DKNVQEIKISPGIMLLIFTKASGH--VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 233 -~~~V~~VafSpg~~ll~sss~~~D--~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t 309 (485)
.+++..++|+|+++.++-.+.- | .-+.|..-..-++++.|+-.+--...+.++ | ++.-+-+||---
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs-P---------dg~~laVwd~~L 200 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRR-DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS-P---------DGNWLAVWDNVL 200 (447)
T ss_pred cccCceeEEECCCCceeeeeecc-cHHHHHHHHhhHHHHHHHhcCCCcccccCceEC-C---------CCcEEEEecchh
Confidence 4689999999977776554432 2 233344333445566666433334577776 4 445666776321
Q ss_pred CeeEEecccCC-CceEEEEEcCCCcEEEEEe-CCcEEEEeC-C----CcEEE----------------------------
Q 011452 310 FELTEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF-R----GELVT---------------------------- 354 (485)
Q Consensus 310 g~~~~~l~gh~-~~v~avaFspdg~llaS~s-D~TIklWd~-~----G~ll~---------------------------- 354 (485)
. -+++.-|- -.+..++++|-+|+|+-|+ |+.+||-|- + ||.++
T Consensus 201 e--ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 201 E--YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred h--heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 1 11111121 3577899999999999999 999988651 1 22111
Q ss_pred ----EeecCC-------------------------CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 355 ----SFEDHL-------------------------LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 355 ----tl~gH~-------------------------~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.++.|. -..|-|.+--++||+|.+++|+-.. ..-+.+-|||+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd---------~~PnalW~Wdl 349 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND---------KYPNALWLWDL 349 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC---------CCCceEEEEec
Confidence 011111 1234467888999999999998642 23467999998
Q ss_pred CCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 406 LTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 406 ~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.-+.-+.|.. +| .|.+..++|....|+-.-...-+.+|.
T Consensus 350 q~l~l~avLiQ------------------------k~---------------piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 350 QNLKLHAVLIQ------------------------KH---------------PIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred hhhhhhhhhhh------------------------cc---------------ceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 85444333322 22 899999999998877655444466663
No 254
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=3.6e-07 Score=97.28 Aligned_cols=168 Identities=12% Similarity=0.054 Sum_probs=102.9
Q ss_pred CcEEEEEEcCCce-EEEEEcCC-CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-e--CCCcEEEEECC
Q 011452 234 KNVQEIKISPGIM-LLIFTKAS-GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-Q--ENENLQILDVR 308 (485)
Q Consensus 234 ~~V~~VafSpg~~-ll~sss~~-~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s--~D~tIkIWDv~ 308 (485)
..+..-+|||++. ++.+.+.. ....|.++|+.+|+...-.. ..+.+...+|+ ||+.+|+.. + .+..|-++|+.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECC
Confidence 4677899999665 45543433 35689999999997654332 22445567786 788888875 3 34567777999
Q ss_pred CCeeEEecccCCCceEEEEEcCCCcEEEEEeC--C--cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 309 tg~~~~~l~gh~~~v~avaFspdg~llaS~sD--~--TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
+++..+... +......-.|+|||+.|+=.+| + .|-+.|+. |+..+ +.....+ ...|||||++|+-.
T Consensus 266 ~g~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt~~g~~-------~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 266 TKTLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VVFHGKN-------NSSVSTYKNYIVYS 336 (419)
T ss_pred CCcEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-CccCCCc-------CceECCCCCEEEEE
Confidence 888655433 3322234469999987775553 3 67777886 55422 2211111 24899999999877
Q ss_pred ecCCCCCCCCcC-CCCeEEEEeCCCCeEEEEecC
Q 011452 384 CKADSDDPLAEG-NAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 384 s~d~~~d~~~~~-~DgtIklWdl~TGk~l~tl~g 416 (485)
+.....+ .+ ....|.+-|+.+|+. ..|..
T Consensus 337 ~~~~~~~---~~~~~~~I~v~d~~~g~~-~~LT~ 366 (419)
T PRK04043 337 SRETNNE---FGKNTFNLYLISTNSDYI-RRLTA 366 (419)
T ss_pred EcCCCcc---cCCCCcEEEEEECCCCCe-EECCC
Confidence 6520000 00 113577778887764 44544
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.96 E-value=1.6e-08 Score=103.50 Aligned_cols=224 Identities=12% Similarity=0.181 Sum_probs=149.0
Q ss_pred hccccccccccCCCCcccccccccccccceEEEEEe----cCEEEEEeCCCeEEeeeccc-CcEE---------------
Q 011452 69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA----RDIVFALAQSGVCAAFCRET-NQRI--------------- 128 (485)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s----~~~ias~s~dgtiklW~~~t-G~~l--------------- 128 (485)
.+..+.+|+-|+|.-.+.-. |--..+|..|..- ...+.....|.|+|+|.+.. +...
T Consensus 61 ey~~~t~fqshepEFDYLkS---leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~ 137 (433)
T KOG1354|consen 61 EYNFQTEFQSHEPEFDYLKS---LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTIT 137 (433)
T ss_pred ceeeeeeeeccCcccchhhh---hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccc
Confidence 45667888999997766443 3456677777766 34455566799999998652 1111
Q ss_pred -------------------EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee
Q 011452 129 -------------------CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES 189 (485)
Q Consensus 129 -------------------~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~ 189 (485)
+.....|.--|+||.+|.|+++++| .|| =.|.||.+.- .++.+.+-.-
T Consensus 138 ~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-----ADd------LRINLWnlei--~d~sFnIVDI 204 (433)
T KOG1354|consen 138 SLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-----ADD------LRINLWNLEI--IDQSFNIVDI 204 (433)
T ss_pred eeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-----ccc------eeeeeccccc--cCCceeEEEc
Confidence 1112235556999999999999987 256 4677887621 1211111110
Q ss_pred -----ccc-cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-E-----EEEEcC------------CcEEEEEEcCCc
Q 011452 190 -----ESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-M-----LYSISD------------KNVQEIKISPGI 245 (485)
Q Consensus 190 -----~~~-~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~-----l~tl~~------------~~V~~VafSpg~ 245 (485)
+.+ --+.+-+|+|..-.+++++|.-|+|||-|+.... | ++..+. ..|.+|+||+.|
T Consensus 205 KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG 284 (433)
T KOG1354|consen 205 KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG 284 (433)
T ss_pred cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC
Confidence 111 1133679998788999999999999999997433 2 222221 258899999877
Q ss_pred eEEEEEcCCCCeeEEEEec-CCCeEEEEeecCCc------------ce---eEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011452 246 MLLIFTKASGHVPLKILSI-EDGTVLKSFNHLLH------------RN---KKVDFIEQFNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 246 ~ll~sss~~~D~tIklWdi-~tG~~L~tl~~~~~------------~~---~~V~f~~~~~~~lls~s~D~tIkIWDv~t 309 (485)
.++.+ . +-.||||||+ ...+.+.+++-|.. .+ +.+.|+ -++..+++||.....+++++..
T Consensus 285 ryils--R-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s-g~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 285 RYILS--R-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS-GNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cEEEE--e-ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc-CCcceEecccccceEEEecCCC
Confidence 66655 2 2389999999 67778888875421 12 367775 4456888899999999999876
Q ss_pred Cee
Q 011452 310 FEL 312 (485)
Q Consensus 310 g~~ 312 (485)
|..
T Consensus 361 gsk 363 (433)
T KOG1354|consen 361 GSK 363 (433)
T ss_pred Ccc
Confidence 643
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.8e-08 Score=108.26 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=135.1
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC-CCeEEEEEcCCcEEEEEEcCCce
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKNVQEIKISPGIM 246 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~-~g~~l~tl~~~~V~~VafSpg~~ 246 (485)
+-++||+...+++ .++|- |.. +.+.-+|+-.|.|. .+.++....-.++ ..-|-|..
T Consensus 15 g~l~iw~t~~~~~----------------~~e~~-p~~----~~s~t~~~~~w~L~~~~s~~k~~~~~~~--~~~s~~t~ 71 (541)
T KOG4547|consen 15 GRLRIWDTAKNQL----------------QQEFA-PIA----SLSGTCTYTKWGLSADYSPMKWLSLEKA--KKASLDTS 71 (541)
T ss_pred CeEEEEEccCcee----------------eeeec-cch----hccCcceeEEEEEEeccchHHHHhHHHH--hhccCCce
Confidence 5899999877765 23453 443 33456899999864 3444443321111 11121211
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEEEee--cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceE
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLKSFN--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS 324 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~tl~--~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~ 324 (485)
.++-+. .-+.|-+.++..|++-..|. .|-+.+..+... +.-+.|-+++.|..+-.|+...+..++.....+..+.
T Consensus 72 ~lvlgt--~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 72 MLVLGT--PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred EEEeec--CCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 122111 12566677778888888887 455666676654 4556788889999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC-----CCEEEEEec
Q 011452 325 AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-----QDLIISYCK 385 (485)
Q Consensus 325 avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD-----G~~LaS~s~ 385 (485)
++..+|||..|++++ ++||+||++ +|.+.+|+||... |+.+.|.-+ |+++.|...
T Consensus 149 sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~-----v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSP-----VRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred eEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcc-----eEEEEEEEeccccccceeeeccc
Confidence 999999999999876 789999996 9999999999988 999999998 888888653
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.96 E-value=7.6e-07 Score=91.90 Aligned_cols=229 Identities=12% Similarity=0.074 Sum_probs=142.0
Q ss_pred EEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc
Q 011452 101 IVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (485)
Q Consensus 101 i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~ 180 (485)
++..++.|+.++.+|.+..+|.++|+.+-.... .. .+.+.-.- .++.++.++ .+ ..+..+|+.+|+.
T Consensus 101 p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~-~~~~~p~v-~~~~v~v~~----~~------g~l~a~d~~tG~~ 167 (377)
T TIGR03300 101 VGADGGLVFVGTEKGEVIALDAEDGKELWRAKL-SS-EVLSPPLV-ANGLVVVRT----ND------GRLTALDAATGER 167 (377)
T ss_pred eEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc-Cc-eeecCCEE-ECCEEEEEC----CC------CeEEEEEcCCCce
Confidence 344588899999999999999999998765443 22 22221111 234555433 22 4677888888886
Q ss_pred CcccceeeeccccCc------eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC------Cc---EEEEEEcC--
Q 011452 181 DAGFALFESESLKWP------GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KN---VQEIKISP-- 243 (485)
Q Consensus 181 ~~~~~lf~~~~~~~~------~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~------~~---V~~VafSp-- 243 (485)
+|+......+ ....+. ++ .+..+..++.+..+|+++|+.+.+..- .. +..+.-+|
T Consensus 168 -----~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 168 -----LWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred -----eeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE
Confidence 4553211100 111232 34 455667789999999999998765421 00 11111112
Q ss_pred -CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCC-
Q 011452 244 -GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM- 321 (485)
Q Consensus 244 -g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~- 321 (485)
++.+.+.+ .++.+..+|.++|+.+...+. ....... ..++++.+++.|+.|..+|..+|+.+-....-..
T Consensus 240 ~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~--~~~~~p~---~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 240 DGGQVYAVS---YQGRVAALDLRSGRVLWKRDA--SSYQGPA---VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred ECCEEEEEE---cCCEEEEEECCCCcEEEeecc--CCccCce---EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 45555543 347999999999999887762 1111222 2378888889999999999999987654321111
Q ss_pred ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCC
Q 011452 322 TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHL 360 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~ 360 (485)
...+.+. .+..|..++ |+.|.++|.+ |+++.+++-+.
T Consensus 312 ~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 1111112 345666677 9999999995 99999888654
No 258
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.94 E-value=1.3e-08 Score=108.69 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=85.0
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
.+...+|+ +|+..|+.-|.|+.+||+|..+-+++.+++.-++...+|+|||||+++|+|+ |.-|.||.+. ++.|..=
T Consensus 292 ~in~f~FS-~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 292 SINEFAFS-PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred cccceeEc-CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 55677887 5888999999999999999999999999999999999999999999999999 9999999995 9999999
Q ss_pred ecCCCCCCCCCeeEEEECC
Q 011452 357 EDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSp 375 (485)
.||..| |+.|+|.|
T Consensus 371 qGHkSW-----Vs~VaFDp 384 (636)
T KOG2394|consen 371 QGHKSW-----VSVVAFDP 384 (636)
T ss_pred cccccc-----eeeEeecc
Confidence 999999 99999986
No 259
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.94 E-value=3.6e-09 Score=105.05 Aligned_cols=134 Identities=11% Similarity=0.154 Sum_probs=104.8
Q ss_pred CCeeEEEEecCCCeEE----------EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eeE--EecccCC
Q 011452 255 GHVPLKILSIEDGTVL----------KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF--ELT--EVSRTEF 320 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L----------~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg--~~~--~~l~gh~ 320 (485)
.++.+-+||+.+|..+ .....|...+.+|+|.+. -..=++++.+..+-.|+++.. .+. ....-..
T Consensus 173 Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn 251 (323)
T KOG0322|consen 173 ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN 251 (323)
T ss_pred cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence 3478999999998433 334467788889998643 234466777788888887743 321 1111223
Q ss_pred CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 321 MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
-.|..+.+-||++.|||++ |+-|||++-+ +..+..|+-|... |++||||||-.++|++|+ |+
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag-----vn~vAfspd~~lmAaask-----------D~ 315 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG-----VNAVAFSPDCELMAAASK-----------DA 315 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc-----eeEEEeCCCCchhhhccC-----------Cc
Confidence 4678889999999999999 9999999996 9999999999976 999999999999999998 79
Q ss_pred eEEEEeC
Q 011452 399 SINISNI 405 (485)
Q Consensus 399 tIklWdl 405 (485)
+|-||++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999985
No 260
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=7.9e-07 Score=84.67 Aligned_cols=212 Identities=17% Similarity=0.130 Sum_probs=133.4
Q ss_pred EEEEeEeccCCcCcccceeeeccc-cCceEE--EEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCC
Q 011452 169 STRIEYIRRGKPDAGFALFESESL-KWPGFV--EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPG 244 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~-~~~~~V--~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg 244 (485)
++..+|.++|+. +|+.... .....+ .+. .+|. |..++.++.+..||.++|+.+.+.. ...+.......+
T Consensus 4 ~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~~-~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 4 TLSALDPRTGKE-----LWSYDLGPGIGGPVATAVP-DGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp EEEEEETTTTEE-----EEEEECSSSCSSEEETEEE-ETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred EEEEEECCCCCE-----EEEEECCCCCCCccceEEE-eCCE-EEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence 556677677775 5665210 112233 342 2454 4445789999999999999887664 222111112234
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEe-ecCC---c--ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSF-NHLL---H--RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT 318 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl-~~~~---~--~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g 318 (485)
+++++.. .++.|..+|.++|+++.++ .... . .....++ .++.++++..++.|..+|+++|+.+-....
T Consensus 77 ~~v~v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 77 GRVYVGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp TEEEEEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccccc---ceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 4444443 2359999999999999985 3221 1 1112332 378888888899999999999998766644
Q ss_pred CCCc----------eEEEEEcCCCcEEEEEeCC-cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 319 EFMT----------PSAFIFLYENQLFLTFRNR-TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 319 h~~~----------v~avaFspdg~llaS~sD~-TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
+... +.+-.+..++.++++..++ .+.+ |++ |+.+.+..-+. +..+ ..+++..|+.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~-------~~~~-~~~~~~~l~~~~~- 220 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKPISG-------IYSL-PSVDGGTLYVTSS- 220 (238)
T ss_dssp STT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEECSS--------ECEC-EECCCTEEEEEET-
T ss_pred CCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEecCCC-------ccCC-ceeeCCEEEEEeC-
Confidence 3311 1233344466777666666 5777 996 88664333111 2221 4578888888875
Q ss_pred CCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 387 DSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 387 ~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
++.|..||+.||+.+.+
T Consensus 221 ----------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 221 ----------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ----------TTEEEEEETTTTEEEEE
T ss_pred ----------CCEEEEEECCCCCEEeE
Confidence 79999999999998764
No 261
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.92 E-value=6.9e-08 Score=98.03 Aligned_cols=210 Identities=8% Similarity=-0.001 Sum_probs=145.2
Q ss_pred CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCC---CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEEC-
Q 011452 233 DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIED---GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV- 307 (485)
Q Consensus 233 ~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~t---G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv- 307 (485)
-..|.+-||++ ..++|++ ... ..|.|..... -+..++|+.|-..+..|++. |...+|++++.|.+-.+|..
T Consensus 10 ~~pitchAwn~drt~iAv~-~~~--~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVS-PNN--HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEec-cCC--ceEEEEEecCCCCceeceehhhhCcceeEEeec-CCCCceeEccCCCCccccccC
Confidence 46899999996 4455544 433 4565655443 45788999999999999997 55679999999999999998
Q ss_pred CCCee--EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 308 RNFEL--TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 308 ~tg~~--~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
..++- .-++.-|......|-++|.+.+||.+| -+.|.||-+++|---=...|..--....|.++.+.|++-+|+.||
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 44443 333445788999999999999999999 999999998766321111121111112389999999999999998
Q ss_pred cCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCC-C----CCCCccccccccccccccchhcccCCe
Q 011452 385 KADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGD-Y----SSGSCNVKKHSHASRIRSTVAEALEDI 459 (485)
Q Consensus 385 ~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~~V 459 (485)
. |+..|++..- ++-+..-. |+.+=| + ++++=+..+ -.+|
T Consensus 166 ~-----------D~k~rVfSay----IK~Vdekp-------ap~pWgsk~PFG~lm~E~~~~--------------ggwv 209 (361)
T KOG1523|consen 166 T-----------DGKCRVFSAY----IKGVDEKP-------APTPWGSKMPFGQLMSEASSS--------------GGWV 209 (361)
T ss_pred c-----------CcceeEEEEe----eeccccCC-------CCCCCccCCcHHHHHHhhccC--------------CCce
Confidence 7 7999998742 22222111 111111 0 011100000 1399
Q ss_pred EEEEEcCCCCEEEEecCCCcEEE
Q 011452 460 TALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 460 ~sl~fspDg~~LaSgs~DgtVkl 482 (485)
..|.|+|+|..|+=.+.|.+|-+
T Consensus 210 h~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 210 HGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred eeeEeCCCCCEeeEecCCCceEE
Confidence 99999999999999999999865
No 262
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.6e-07 Score=101.01 Aligned_cols=277 Identities=10% Similarity=0.163 Sum_probs=187.1
Q ss_pred HHHhhhccccccccccCCCCcccccccccccccceEEEEEecCEE-EEEeCCCeEEeeecccCcEEEEeecCCcccEEEE
Q 011452 64 QERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIV-FALAQSGVCAAFCRETNQRICFLNVTADEVIRSL 142 (485)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~i-as~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv 142 (485)
++.++.|.|-+.|++-.......+ +|+ |++| |+|-+--.||+||+. +--|++=..-..++|.=.
T Consensus 36 ~~~~~rieLiQdfe~p~ast~ik~-s~D-------------GqY~lAtG~YKP~ikvydla-nLSLKFERhlDae~V~fe 100 (703)
T KOG2321|consen 36 VDYRQRIELIQDFEMPTASTRIKV-SPD-------------GQYLLATGTYKPQIKVYDLA-NLSLKFERHLDAEVVDFE 100 (703)
T ss_pred hHHHHHHHHHHhcCCccccceeEe-cCC-------------CcEEEEecccCCceEEEEcc-cceeeeeecccccceeEE
Confidence 678888999998887555444444 666 7765 677888999999976 555654333234445443
Q ss_pred EEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc---eEEEEeCCCCeEEEEeeCCCcEEE
Q 011452 143 FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP---GFVEFDDVNGKVLTYSAQDSIYKV 219 (485)
Q Consensus 143 ~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~---~~V~Fs~pnG~~Las~s~D~tiKl 219 (485)
-++-|-..++. --.| |+|.+-. .-|.- +.. .-| ..+.++.|+..++.-|+....||
T Consensus 101 iLsDD~SK~v~----L~~D------R~IefHa-k~G~h------y~~---RIP~~GRDm~y~~~scDly~~gsg~evYR- 159 (703)
T KOG2321|consen 101 ILSDDYSKSVF----LQND------RTIEFHA-KYGRH------YRT---RIPKFGRDMKYHKPSCDLYLVGSGSEVYR- 159 (703)
T ss_pred EeccchhhheE----eecC------ceeeehh-hcCee------eee---ecCcCCccccccCCCccEEEeecCcceEE-
Confidence 33333222211 1122 4444432 22221 111 111 13566667777777666665555
Q ss_pred eecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC------c-----ceeEEEEE
Q 011452 220 FDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL------H-----RNKKVDFI 286 (485)
Q Consensus 220 Wdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~------~-----~~~~V~f~ 286 (485)
.+|+.|..|..+. ...++.|.++|-.-|++++. .++.|..||..+-....++..-. + .+.++.|.
T Consensus 160 lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt--~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~ 237 (703)
T KOG2321|consen 160 LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT--EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR 237 (703)
T ss_pred EEccccccccccccccccceeeeecCccceEEecc--cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec
Confidence 5999999998886 36899999998444444433 35899999998877777775322 2 26788985
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCCceEEEEEcCC--CcEEEEEeCCcEEEEeCC-CcEEEEeecCCCC
Q 011452 287 EQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFMTPSAFIFLYE--NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLW 362 (485)
Q Consensus 287 ~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~~v~avaFspd--g~llaS~sD~TIklWd~~-G~ll~tl~gH~~~ 362 (485)
.+|=.+++|..+|.|-|+|+++.+++.+- .+....+..+.|.+. +..++|..-.++||||-. |+....++--.
T Consensus 238 -d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~-- 314 (703)
T KOG2321|consen 238 -DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS-- 314 (703)
T ss_pred -CCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccC--
Confidence 34567777889999999999999877664 234558888888665 566777778899999985 99998887533
Q ss_pred CCCCCeeEEEECCCCCEEEEEec
Q 011452 363 HPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.++.+++-|++-++..+-.
T Consensus 315 ----~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 315 ----DLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ----CcCceeeecCCceEEEecC
Confidence 2899999999999998854
No 263
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=7.8e-07 Score=94.74 Aligned_cols=200 Identities=10% Similarity=0.049 Sum_probs=129.0
Q ss_pred eEEEEeCCCCeE-EEEeeCC---CcEEEeecCCCeEEEEE-cCCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeE
Q 011452 196 GFVEFDDVNGKV-LTYSAQD---SIYKVFDLKNYTMLYSI-SDKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 196 ~~V~Fs~pnG~~-Las~s~D---~tiKlWdl~~g~~l~tl-~~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
.+-.|+ |||+. +++.+.+ ..|.++|+.+|+...-. ....+...+|||++ .++.+.+.+.+..|-++|+.+|+
T Consensus 191 ~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~- 268 (419)
T PRK04043 191 IFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT- 268 (419)
T ss_pred EeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-
Confidence 367887 79984 7765543 56888899988743322 23456678899866 56655555556778888998887
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEe-CCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-C-----
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-N----- 340 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D----- 340 (485)
++.+..+........|+ |||.+|+..+ ..+ .|-+.|+.+|+..+...... ....|||||+.|+-.+ .
T Consensus 269 ~~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 269 LTQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EEEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCCCccc
Confidence 44455333333355676 7888888875 333 56777999888766543211 1248999999988766 3
Q ss_pred --C--cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 341 --R--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 341 --~--TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
+ .|.+.|+++...+.|+... . .....|||||+.|+-.+.. +....+-+.++. |.-...|..
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~~~-~-----~~~p~~SPDG~~I~f~~~~--------~~~~~L~~~~l~-g~~~~~l~~ 409 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTANG-V-----NQFPRFSSDGGSIMFIKYL--------GNQSALGIIRLN-YNKSFLFPL 409 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCCCC-C-----cCCeEECCCCCEEEEEEcc--------CCcEEEEEEecC-CCeeEEeec
Confidence 2 4666687644445565542 1 2368899999998877641 222447777764 655555543
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.87 E-value=5.3e-09 Score=122.76 Aligned_cols=179 Identities=15% Similarity=0.190 Sum_probs=139.9
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~ 278 (485)
|--.+-.+||+|+.||+|....++.+..+. ...|+.+.|+ .|++..++ +.|+-|-+|.+. -+...+-+-|.-
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~---d~dg~l~l~q~~-pk~~~s~qchnk 2293 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIV---DGDGDLSLWQAS-PKPYTSWQCHNK 2293 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeee---ccCCceeecccC-CcceeccccCCc
Confidence 555677889999999999999888887775 3579999999 58888776 677999999985 455555565555
Q ss_pred ceeEEEEEecCCCEEEEEe---CCCcEEEEECC-CC--eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C
Q 011452 279 RNKKVDFIEQFNEKLLVKQ---ENENLQILDVR-NF--ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 350 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s---~D~tIkIWDv~-tg--~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G 350 (485)
....+.|+. .-++++| +++++-+||.- .+ -++. ..|...++.+++-|.-|+|+||+ +|.|+|||++ .
T Consensus 2294 ~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2294 ALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred cccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 556788873 4455543 89999999944 22 2344 67999999999999999999999 9999999996 8
Q ss_pred cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 351 ~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
++.+++.. ++ -..++++++. .|+||||++.+-.+++++..
T Consensus 2369 ql~h~~~~---~~------------~~~~f~~~ss-----------~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2369 QLRHTFQA---LD------------TREYFVTGSS-----------EGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred HHHHHhhh---hh------------hhheeeccCc-----------ccceEEEEccccchhhcCch
Confidence 88877754 21 2467888875 69999999988788887764
No 265
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.86 E-value=4.2e-06 Score=79.69 Aligned_cols=212 Identities=16% Similarity=0.124 Sum_probs=134.9
Q ss_pred CCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec
Q 011452 213 QDSIYKVFDLKNYTMLYSISD----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ 288 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~ 288 (485)
.+++|..||+.+|+.+.+..- ......++.+++.++++. .++.|..||+.||+.+.++.. ...+..... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~--~ 74 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDL-PGPISGAPV--V 74 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEEC-SSCGGSGEE--E
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeec-cccccceee--e
Confidence 378999999999999877641 222222443566666652 347999999999999988874 122221111 3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEec-ccCC---CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC
Q 011452 289 FNEKLLVKQENENLQILDVRNFELTEVS-RTEF---MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 362 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~---~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~ 362 (485)
.++.+++...|+.|..+|..+|+.+-.. .... ..........++..++.+. ++.|...|.+ |+++.....+...
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 3678888888889999999999987763 3221 1112222333366666666 9999999985 9998888764421
Q ss_pred CCCCC------eeEEEECCCCCEEEEEecCCCCCCCCcCCCC-eEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCC
Q 011452 363 HPDCN------TNNIYITSDQDLIISYCKADSDDPLAEGNAG-SINISNILTGKCLAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 363 ~~~~~------v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg-tIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
. ... ...-.+..++.+.++ +. ++ .+.+ |+.+|+.+.....+
T Consensus 155 ~-~~~~~~~~~~~~~~~~~~~~v~~~-~~-----------~g~~~~~-d~~tg~~~w~~~~~------------------ 202 (238)
T PF13360_consen 155 G-SSPISSFSDINGSPVISDGRVYVS-SG-----------DGRVVAV-DLATGEKLWSKPIS------------------ 202 (238)
T ss_dssp S-S--EEEETTEEEEEECCTTEEEEE-CC-----------TSSEEEE-ETTTTEEEEEECSS------------------
T ss_pred C-CcceeeecccccceEEECCEEEEE-cC-----------CCeEEEE-ECCCCCEEEEecCC------------------
Confidence 0 000 123333345544444 33 35 5888 99999977544321
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+.+ ...+++..|+.++.|+.|..||.
T Consensus 203 ----------------------~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 203 ----------------------GIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp -----------------------ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred ----------------------CccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 2222 24678899999999999999873
No 266
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.85 E-value=6e-08 Score=98.90 Aligned_cols=196 Identities=13% Similarity=0.116 Sum_probs=126.8
Q ss_pred EEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecc
Q 011452 239 IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSR 317 (485)
Q Consensus 239 VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~ 317 (485)
..|||+|..+++.+. ..+-|=|.+|-++++-|.- +..+.-+.+. .+...++.+ ..|+.|++|++...+-..-+.
T Consensus 14 c~fSp~g~yiAs~~~---yrlviRd~~tlq~~qlf~c-ldki~yieW~-ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR---YRLVIRDSETLQLHQLFLC-LDKIVYIEWK-ADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred eeECCCCCeeeeeee---eEEEEeccchhhHHHHHHH-HHHhhheeee-ccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 578987777766543 4566667766555444432 1233334443 345566665 799999999999988777776
Q ss_pred cCCCceEEEEEcCCCcEEE-EEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCC-CC-----
Q 011452 318 TEFMTPSAFIFLYENQLFL-TFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD-SD----- 389 (485)
Q Consensus 318 gh~~~v~avaFspdg~lla-S~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~-~~----- 389 (485)
..+..+.++.+||||+.++ ++. |-.|.+|.+..+-..-+ .||..++..++|+|||++.+-.+.-| +|
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-----~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-----PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-----cccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 6777899999999996555 455 99999999953322211 12333378999999999999887643 10
Q ss_pred ----------------C--CCC-cCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccccccc
Q 011452 390 ----------------D--PLA-EGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRS 450 (485)
Q Consensus 390 ----------------d--~~~-~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (485)
| ++. ..+++.+-+||-- +-.++-+-+ .+
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~---Leykv~aYe--------------------------~~---- 210 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV---LEYKVYAYE--------------------------RG---- 210 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEEEecch---hhheeeeee--------------------------ec----
Confidence 1 111 1123455666521 111111111 00
Q ss_pred chhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 451 TVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 451 ~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
..|-.++|||.++.|+-||.|+.+||=
T Consensus 211 ------lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 211 ------LGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred ------cceeEEEeccccceEEeeccchhhhhh
Confidence 268889999999999999999999873
No 267
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.81 E-value=3e-06 Score=86.64 Aligned_cols=208 Identities=15% Similarity=0.155 Sum_probs=138.4
Q ss_pred EEEEeCCCCeEEEEeeCCCcE-EEeecCCCeEEEEEcC---Cc-EEEEEEcCCceEEEEEcCCC---CeeEEEEecC-CC
Q 011452 197 FVEFDDVNGKVLTYSAQDSIY-KVFDLKNYTMLYSISD---KN-VQEIKISPGIMLLIFTKASG---HVPLKILSIE-DG 267 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~ti-KlWdl~~g~~l~tl~~---~~-V~~VafSpg~~ll~sss~~~---D~tIklWdi~-tG 267 (485)
.++.+|..+..+|.+-.-++. -+||..+|+.+..+.. .. -=--.|||++.+|.+...+. .+-|-|||.+ +-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 456654366677777666654 4899999998888752 11 22367999887777755443 4899999998 55
Q ss_pred eEEEEeecCCcceeEEEEEecCCCEEEEE--e-----C-----------CCcEEEEECCCCeeEEe--c--ccCCCceEE
Q 011452 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVK--Q-----E-----------NENLQILDVRNFELTEV--S--RTEFMTPSA 325 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f~~~~~~~lls~--s-----~-----------D~tIkIWDv~tg~~~~~--l--~gh~~~v~a 325 (485)
+.+..|..|.-.--.+.+. ||++.|+++ + + +-++-..|..+|++++. + .-|+..+.=
T Consensus 89 ~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred EEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 6677777532222266665 778788875 2 1 24567789999998887 5 448889999
Q ss_pred EEEcCCCcEEEEEe-CC-------cEEEEeCCCcEEEEeecCCC-C-CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 326 FIFLYENQLFLTFR-NR-------TVAVWNFRGELVTSFEDHLL-W-HPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 326 vaFspdg~llaS~s-D~-------TIklWd~~G~ll~tl~gH~~-~-~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
+++.++|..+...- .+ -|-+++. |+.++.+..-.. | .-..++-||+|++||.+++..|.
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP---------- 236 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP---------- 236 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC----------
Confidence 99999998766553 22 2233332 332333322110 0 11134889999999999988775
Q ss_pred CCCeEEEEeCCCCeEEEEecC
Q 011452 396 NAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 396 ~DgtIklWdl~TGk~l~tl~g 416 (485)
.-+.+-+||..||+++....-
T Consensus 237 rGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred CCCEEEEEECCCCCEeecccc
Confidence 478999999999999876543
No 268
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=6.3e-08 Score=98.18 Aligned_cols=245 Identities=14% Similarity=0.132 Sum_probs=152.7
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCC-CeEEEE----EcC--------------CcEEEEEEc-CCc---eEEEE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYS----ISD--------------KNVQEIKIS-PGI---MLLIF 250 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~~l~t----l~~--------------~~V~~VafS-pg~---~ll~s 250 (485)
-+.+|+|+ ..|.+||+|...|-|-++.-.. +-|-|. +++ ..|.+|.+- |++ .|+++
T Consensus 28 ~ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 28 KITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred eeeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 35589998 6899999998889998887542 324332 211 358888888 533 34443
Q ss_pred EcCCCCeeEEEEecCCCe-------------------EEE--------E---------------e-ecCCcceeEEEEEe
Q 011452 251 TKASGHVPLKILSIEDGT-------------------VLK--------S---------------F-NHLLHRNKKVDFIE 287 (485)
Q Consensus 251 ss~~~D~tIklWdi~tG~-------------------~L~--------t---------------l-~~~~~~~~~V~f~~ 287 (485)
.|+|||||.+-... .+. . . +.|.-++.++.|..
T Consensus 107 ----NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 107 ----NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred ----CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 56999999875420 000 0 1 23555677888853
Q ss_pred cCCCEEEEEeCCCcEEEEECCCC---eeEEecccCCC-----ceEEEEEcCCCcEEE--EEeCCcEEEEeCC-Cc-EE--
Q 011452 288 QFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFM-----TPSAFIFLYENQLFL--TFRNRTVAVWNFR-GE-LV-- 353 (485)
Q Consensus 288 ~~~~~lls~s~D~tIkIWDv~tg---~~~~~l~gh~~-----~v~avaFspdg~lla--S~sD~TIklWd~~-G~-ll-- 353 (485)
+...+.+++|-.|.||++.-- --+--...|.+ -|++.-|+|+.-.+. |+|.|+|||-|++ .. |.
T Consensus 183 --D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 --DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred --chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 344455568999999998732 22333455544 567778999765433 3349999999986 22 22
Q ss_pred -EEeecCCCCCC-------CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCc
Q 011452 354 -TSFEDHLLWHP-------DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAEN 424 (485)
Q Consensus 354 -~tl~gH~~~~~-------~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~ 424 (485)
.+|+....... -..+..+.|||+|+||+|-+- -||+|||+.- .+|+.|+.-|.+.+.
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy------------ltvkiwDvnm~k~pikTi~~h~~l~~-- 326 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY------------LTVKIWDVNMAKNPIKTIPMHCDLMD-- 326 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc------------ceEEEEecccccCCceeechHHHHHH--
Confidence 22221111000 012778999999999999764 8999999965 579999988864110
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
-+|++- ...+.-+=..+.||-|.+.+.|||..+..
T Consensus 327 ----------~l~d~Y-----------EnDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 327 ----------ELNDVY-----------ENDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred ----------HHHhhh-----------hccceeeeEEEEecCCcccccccccccce
Confidence 001000 01111133458899999999999876543
No 269
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=1.3e-08 Score=71.41 Aligned_cols=27 Identities=26% Similarity=0.632 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 458 DITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|++|+|+|+++.|+||+.|++|+|||
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 999999999999999999999999997
No 270
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=1e-07 Score=98.18 Aligned_cols=137 Identities=13% Similarity=0.188 Sum_probs=104.3
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEecc-cCCCceEEEEEcCCCcEEE-EEeCCcEEEEeCCCcEE---------------E
Q 011452 292 KLLVKQENENLQILDVRNFELTEVSR-TEFMTPSAFIFLYENQLFL-TFRNRTVAVWNFRGELV---------------T 354 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~tg~~~~~l~-gh~~~v~avaFspdg~lla-S~sD~TIklWd~~G~ll---------------~ 354 (485)
.++++..|-+|||+|-.. .+...++ --+..|.+++|-|-+..-+ -++-+-|-||..+-.+. -
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhe
Confidence 455667899999999887 4444443 2355899999998776544 44477899998642211 1
Q ss_pred EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCcccccCCCCC
Q 011452 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI-RASNGLPAENECSCSGDYS 433 (485)
Q Consensus 355 tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl-~gH~~~~~~~~~~~~~~~~ 433 (485)
.-.||. . |.++.+.+||..|+++|.+ |..|.|||+.||+++--. .+
T Consensus 191 ~~pgh~-p-----Vtsmqwn~dgt~l~tAS~g----------sssi~iWdpdtg~~~pL~~~g----------------- 237 (445)
T KOG2139|consen 191 QDPGHN-P-----VTSMQWNEDGTILVTASFG----------SSSIMIWDPDTGQKIPLIPKG----------------- 237 (445)
T ss_pred eCCCCc-e-----eeEEEEcCCCCEEeecccC----------cceEEEEcCCCCCcccccccC-----------------
Confidence 223452 3 8999999999999999984 789999999999987654 22
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+..++-|-|||||..|..+.-|++.+||+
T Consensus 238 ----------------------lgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 238 ----------------------LGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred ----------------------CCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 13788899999999999999999999994
No 271
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.76 E-value=1.7e-05 Score=82.94 Aligned_cols=272 Identities=14% Similarity=0.127 Sum_probs=158.2
Q ss_pred EEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEE----------EEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIR----------SLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 102 ~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~----------sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
+++++.|+.++.+|.+..+|.++|+.+=.........+. ++.. +++.|+.++ .+ ..+.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~------g~l~ 133 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EK------GQVY 133 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CC------CEEE
Confidence 456889999999999999999999987654432211010 0111 234444433 22 3566
Q ss_pred EeEeccCCcCcccceeeeccccCceE-EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC-cEEEE--EEcC---C
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEI--KISP---G 244 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~-V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~-~V~~V--afSp---g 244 (485)
-.|..+|++ +|+......+.+ -... ++++++ ++.|+.+.-.|.++|+.+...... ....+ .-+| +
T Consensus 134 ald~~tG~~-----~W~~~~~~~~~ssP~v~--~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 134 ALNAEDGEV-----AWQTKVAGEALSRPVVS--DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF 205 (394)
T ss_pred EEECCCCCC-----cccccCCCceecCCEEE--CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence 678788987 565522111111 1121 566555 566889999999999998777531 11000 1123 3
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc-------ceeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeeEEec
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-------RNKKVDFIE-QFNEKLLVKQENENLQILDVRNFELTEVS 316 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~-------~~~~V~f~~-~~~~~lls~s~D~tIkIWDv~tg~~~~~l 316 (485)
+.+++.. .++.+.-.|.++|+.+..++.... +...+...| ..++.+.+.+.|+.+...|+.+|+.+-..
T Consensus 206 ~~v~~~~---~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVGG---DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEc---CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 4444442 346888899999998876542110 000111110 12678888889999999999999875433
Q ss_pred ccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 317 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 317 ~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
. ......++ ..++.+++...|+.+...|.+ |+.+-+.+.-... ...+.++ -+ .+|..++.
T Consensus 283 ~--~~~~~~~~-~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~----~~~sp~v-~~-g~l~v~~~---------- 343 (394)
T PRK11138 283 E--YGSVNDFA-VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR----LLTAPVL-YN-GYLVVGDS---------- 343 (394)
T ss_pred c--CCCccCcE-EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC----cccCCEE-EC-CEEEEEeC----------
Confidence 2 11111222 235555555459999999995 8876543321111 0122222 14 45555554
Q ss_pred CCCeEEEEeCCCCeEEEEecC
Q 011452 396 NAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 396 ~DgtIklWdl~TGk~l~tl~g 416 (485)
||.|...|..||+.+...+-
T Consensus 344 -~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 344 -EGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred -CCEEEEEECCCCCEEEEEEc
Confidence 79999999999999987754
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1.8e-06 Score=92.95 Aligned_cols=278 Identities=12% Similarity=0.112 Sum_probs=172.8
Q ss_pred ceEEEEEe--cCEEE-----EEeCCCeEE-----eeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcc
Q 011452 97 KIIEIVAA--RDIVF-----ALAQSGVCA-----AFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSS 164 (485)
Q Consensus 97 ~V~~i~~s--~~~ia-----s~s~dgtik-----lW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~st 164 (485)
.++++.|| +.+|. +-..+++.. +|+.+||.....++...... |+..|++|-.+-|-
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~ar----------- 142 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAAR----------- 142 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhh-----------
Confidence 57778887 66654 344555555 99999977766666544333 78999998654322
Q ss_pred cceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC--e-----EEEEeeCCCcEEEeecCCCeE-----EEEEc
Q 011452 165 LRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG--K-----VLTYSAQDSIYKVFDLKNYTM-----LYSIS 232 (485)
Q Consensus 165 L~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG--~-----~Las~s~D~tiKlWdl~~g~~-----l~tl~ 232 (485)
|-...+.++++-. .. ..+..-+...+...++|+ -+ - +..+.+.-..||||...-... ..++-
T Consensus 143 lv~nev~f~~~~~--f~---~~~~kl~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 143 LVSNEVQFYDLGS--FK---TIQHKLSVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF 216 (566)
T ss_pred hhcceEEEEecCC--cc---ceeeeeeccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence 1124666766422 11 011111223333455552 21 1 112346678899998652111 12221
Q ss_pred -CCcEEEEEEcC-CceEEEEEcCCCC---------eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-e-CC
Q 011452 233 -DKNVQEIKISP-GIMLLIFTKASGH---------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-Q-EN 299 (485)
Q Consensus 233 -~~~V~~VafSp-g~~ll~sss~~~D---------~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s-~D 299 (485)
.+.| ...+.+ |.-||+-++.+-| .++.+.++++-.+...|.. .+.|.+|.|+ +++..+++. | .=
T Consensus 217 kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~-~s~~EF~VvyGfMP 293 (566)
T KOG2315|consen 217 KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVTWS-PSGREFAVVYGFMP 293 (566)
T ss_pred cccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEEEC-CCCCEEEEEEeccc
Confidence 1222 234443 2222222222222 5899999985567777763 4789999997 556555553 4 78
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe----CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEEC
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 374 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s----D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafS 374 (485)
-.+-|+|++ +..+..+. .+.=+++-|+|.|++++-++ -|.|.+||+. -+++.+++.-. ..-..|+
T Consensus 294 Akvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-------tt~~eW~ 363 (566)
T KOG2315|consen 294 AKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-------TTVFEWS 363 (566)
T ss_pred ceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-------ceEEEEc
Confidence 899999999 55555552 23457788999999988776 5799999994 88999987532 4568899
Q ss_pred CCCCEEEEEecCC-CCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 375 SDQDLIISYCKAD-SDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 375 pDG~~LaS~s~d~-~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
|||++++++..+| =+- |+.||||+. ||..+.
T Consensus 364 PdGe~flTATTaPRlrv------dNg~Kiwhy-tG~~l~ 395 (566)
T KOG2315|consen 364 PDGEYFLTATTAPRLRV------DNGIKIWHY-TGSLLH 395 (566)
T ss_pred CCCcEEEEEeccccEEe------cCCeEEEEe-cCceee
Confidence 9999999998744 121 588999996 588765
No 273
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=9.2e-08 Score=105.18 Aligned_cols=278 Identities=12% Similarity=0.125 Sum_probs=171.4
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecc-cCcEEEEeecCCcccEEEEEEeeCC---CEEEEEEeecCCCCcccceeEE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRE-TNQRICFLNVTADEVIRSLFYNKNN---DSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~-tG~~l~tl~g~~~~~i~sv~~spdg---~~Las~S~d~~~d~stL~~~t~ 170 (485)
++-++.+. |+-||.++.-|..-+ |+. .+.+-+-|..-....|-.+-+||.- ..+++.| . +..
T Consensus 26 ~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-----~------qka 93 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-----N------QKA 93 (1081)
T ss_pred cccceeeccccchhhhhhhcCeEEE-eccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-----c------chh
Confidence 34444444 666666666555433 222 2444333322222335556666652 2233333 1 455
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEc--CCcEEEEEEc-CCce
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKNVQEIKIS-PGIM 246 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~--~~~V~~VafS-pg~~ 246 (485)
-+|++..-. +.++.+.-+++...+..+.|.+.+-.+||+++.|-.+-.||+.+-. .+|+.. ...-..|+++ .+.-
T Consensus 94 iiwnlA~ss-~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 94 IIWNLAKSS-SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred hhhhhhcCC-ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc
Confidence 578873322 2334444444555556678887778899999999999999998765 667665 3456679999 3333
Q ss_pred EEEEEcCCCCeeEEEEecCC-CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eeEEecccCCCce
Q 011452 247 LLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF--ELTEVSRTEFMTP 323 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg--~~~~~l~gh~~~v 323 (485)
.++++.+ +-|.+||+.- +.+|.++++|...+..++|...--..+++.+.|+|||.||-... +...+.. -...+
T Consensus 173 vlasshg---~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~pi 248 (1081)
T KOG0309|consen 173 VLASSHG---NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPI 248 (1081)
T ss_pred hhhhccC---CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccCcc
Confidence 3444222 6799999875 46899999988888899987554567788899999999998754 3333332 23355
Q ss_pred EEEEEcCCCc-----------EEEEEe-CCcEEEEeC-C-CcEEEEeecCCCCCCCCCeeEEEECC----CC------CE
Q 011452 324 SAFIFLYENQ-----------LFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITS----DQ------DL 379 (485)
Q Consensus 324 ~avaFspdg~-----------llaS~s-D~TIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSp----DG------~~ 379 (485)
+--.|.|-|+ .+.--. +..-+.||+ + -+.+++|.||.+. |...-+-. || =.
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~-----V~eFlWR~r~e~~~d~d~rdfQ 323 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV-----VLEFLWRKRKECDGDYDSRDFQ 323 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH-----HHHHhhhhcccccCCCCcccee
Confidence 6555666433 222222 455667887 4 5689999999964 22222211 11 14
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
|++-|+ |.++|||-|.+
T Consensus 324 LVTWSk-----------D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 324 LVTWSK-----------DQTLRLWPIDS 340 (1081)
T ss_pred EEEeec-----------CCceEeeeccH
Confidence 788887 79999998853
No 274
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.69 E-value=4.3e-06 Score=89.34 Aligned_cols=262 Identities=10% Similarity=0.025 Sum_probs=159.6
Q ss_pred CCCeEEe-eecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeecc
Q 011452 113 QSGVCAA-FCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (485)
Q Consensus 113 ~dgtikl-W~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~ 191 (485)
.+..+.+ |+.+ .....+.....+..+..+.|||.|.+|++.- -..|.+|+-+.+. .|... .
T Consensus 9 ~s~~i~~f~~~~-s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----------~~~V~~~~g~~~~-----~l~~~-~ 70 (561)
T COG5354 9 YSAVISVFWNSQ-SEVIHTRFESENWPVAYVSESPLGTYLFSEH-----------AAGVECWGGPSKA-----KLVRF-R 70 (561)
T ss_pred ccceEEEeecCc-cccccccccccCcchhheeecCcchheehhh-----------ccceEEccccchh-----heeee-e
Confidence 3444444 5544 5556666666788999999999999997722 1567777743332 12222 1
Q ss_pred ccCceEEEEeCCCCeEEEEeeC---------------CCcEEEeecCCCeEEEEEcC--Cc--EE-EEEEcCCceEEEEE
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQ---------------DSIYKVFDLKNYTMLYSISD--KN--VQ-EIKISPGIMLLIFT 251 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~---------------D~tiKlWdl~~g~~l~tl~~--~~--V~-~VafSpg~~ll~ss 251 (485)
...+..+.|+ |+|++|++=+. +..+.|||.++|..+.++.. .. .| -+.||-+..+++--
T Consensus 71 ~~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 71 HPDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred cCCceecccC-cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 2345689998 89999998764 33599999999999999863 22 55 68899444443332
Q ss_pred cCCCCeeEEEEecCCCeEE----EEeecCCcceeEEEEEecCC-CEEEE-----EeCCCcEEEEECCCCeeEEecccCCC
Q 011452 252 KASGHVPLKILSIEDGTVL----KSFNHLLHRNKKVDFIEQFN-EKLLV-----KQENENLQILDVRNFELTEVSRTEFM 321 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L----~tl~~~~~~~~~V~f~~~~~-~~lls-----~s~D~tIkIWDv~tg~~~~~l~gh~~ 321 (485)
.. ..++|.++ |+..- +.++ ..++..-.|++-.+ ..|+. ++.+.+++||.+-.+..+.+-. ..
T Consensus 150 v~---~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--lf 221 (561)
T COG5354 150 VG---SSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--LF 221 (561)
T ss_pred cc---CeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--eE
Confidence 22 47888887 44432 2222 12344445543312 22332 3588999999988655443311 11
Q ss_pred ceE--EEEEcCCCcEEEEEe------------CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCC
Q 011452 322 TPS--AFIFLYENQLFLTFR------------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (485)
Q Consensus 322 ~v~--avaFspdg~llaS~s------------D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~ 387 (485)
.+. .+-+.+.|+.|+.-- ..++.|.++++.-+....+-.+. |-+.+|.|+++..+..+
T Consensus 222 k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~p-----Vhdf~W~p~S~~F~vi~--- 293 (561)
T COG5354 222 KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDP-----VHDFTWEPLSSRFAVIS--- 293 (561)
T ss_pred eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccc-----ceeeeecccCCceeEEe---
Confidence 222 244577777665211 24566777764433333233334 89999999998877765
Q ss_pred CCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 388 SDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 388 ~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
+.++.++.+.|+. |+...-+..
T Consensus 294 ------g~~pa~~s~~~lr-~Nl~~~~Pe 315 (561)
T COG5354 294 ------GYMPASVSVFDLR-GNLRFYFPE 315 (561)
T ss_pred ------cccccceeecccc-cceEEecCC
Confidence 2347899999987 666555543
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.69 E-value=9.2e-08 Score=112.73 Aligned_cols=210 Identities=18% Similarity=0.200 Sum_probs=158.2
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeec-CCcce
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH-LLHRN 280 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~-~~~~~ 280 (485)
+.++..+.+..+.+.--|.-+.+..+..-+-++|..+.=+| ...++++ +.|+.|++|-...|+.+.++.. -..++
T Consensus 2178 ~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltg---s~dgsv~~~~w~~~~~v~~~rt~g~s~v 2254 (2439)
T KOG1064|consen 2178 SFSNRFTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTG---SQDGSVRMFEWGHGQQVVCFRTAGNSRV 2254 (2439)
T ss_pred cccccCCcccCCccccceecccceeEeecccCceeeecCCCCCceEEec---CCCceEEEEeccCCCeEEEeeccCcchh
Confidence 45666777777877777776544433332346777777777 5555544 4568999999999999888862 22667
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe----CCcEEEEeC--CCc--E
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNF--RGE--L 352 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s----D~TIklWd~--~G~--l 352 (485)
....|+.+ |.+..++-.||-+-+|.+. .+....-+-|......|.|.- .++++++ ++.+-+||. .+. +
T Consensus 2255 tr~~f~~q-Gnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2255 TRSRFNHQ-GNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred hhhhhccc-CCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence 78999754 7899999999999999988 444445566888899999976 6677763 779999997 333 5
Q ss_pred EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCC
Q 011452 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDY 432 (485)
Q Consensus 353 l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~ 432 (485)
+. +.|... +.-+++-|..|+|+||++ +|-|+|||+...|+.++++.
T Consensus 2331 v~--~~H~~g-----aT~l~~~P~~qllisggr-----------~G~v~l~D~rqrql~h~~~~---------------- 2376 (2439)
T KOG1064|consen 2331 VH--TCHDGG-----ATVLAYAPKHQLLISGGR-----------KGEVCLFDIRQRQLRHTFQA---------------- 2376 (2439)
T ss_pred ee--eecCCC-----ceEEEEcCcceEEEecCC-----------cCcEEEeehHHHHHHHHhhh----------------
Confidence 66 667654 889999999999999987 79999999987777665543
Q ss_pred CCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 433 SSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+ ...++++|+..|.+|||+.
T Consensus 2377 -------------------------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2377 -------------------------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred -------------------------------hh-hhheeeccCcccceEEEEc
Confidence 12 3578899999999999974
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.67 E-value=3.7e-06 Score=86.40 Aligned_cols=241 Identities=10% Similarity=0.106 Sum_probs=152.8
Q ss_pred ccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeee-cccCcEEEEeecCCcccEEEEEEeeCCCEEE
Q 011452 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFC-RETNQRICFLNVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~-~~tG~~l~tl~g~~~~~i~sv~~spdg~~La 152 (485)
.-|+.|..-.+..+..|. .+.+++++.|.|+|+|- ++.||.-..+..+....++++.|+++-..|.
T Consensus 18 ~~~eG~~d~vn~~~l~~~-------------e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPK-------------EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLY 84 (404)
T ss_pred hhhcCchhhhhhheeccC-------------CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEE
Confidence 345666666666666666 78899999999999995 7778877766555566899999999887776
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCCcCcccceeee---ccccCceEEEEeCCCCeEEEEeeCCCcEEEee-cCCCeEE
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD-LKNYTML 228 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWd-l~~g~~l 228 (485)
.+= ++ .++.=..+ .-.++. .+|-. .+...+..+-|+.+ -+.+.|.+.|..+ .|- .+.|..+
T Consensus 85 vg~----~n------gtvtefs~-sedfnk--m~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~-~~hc~e~~~~l 149 (404)
T KOG1409|consen 85 VGQ----DN------GTVTEFAL-SEDFNK--MTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQF-AWHCTESGNRL 149 (404)
T ss_pred EEE----ec------ceEEEEEh-hhhhhh--cchhhhhhhhhcceeeEEecCC-ceeEEEeccccce-EEEeeccCCcc
Confidence 522 23 12211111 111110 01111 13333445678754 5667788888766 453 2334332
Q ss_pred --EEEc--C-C--cEEEEEEcCCceEEEEEcCCCCeeEEEEe--cCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCC
Q 011452 229 --YSIS--D-K--NVQEIKISPGIMLLIFTKASGHVPLKILS--IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN 299 (485)
Q Consensus 229 --~tl~--~-~--~V~~VafSpg~~ll~sss~~~D~tIklWd--i~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D 299 (485)
|.+. . . -.-..+|-. +..+.|.+.. .+.=.++.++++|.+.+....+- +-+..|.++..|
T Consensus 150 g~Y~~~~~~t~~~~d~~~~fvG----------d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d 218 (404)
T KOG1409|consen 150 GGYNFETPASALQFDALYAFVG----------DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASD 218 (404)
T ss_pred cceEeeccCCCCceeeEEEEec----------ccccceEEEEEeecCCceEEEEcCcccceEEEEEc-CCCcEEEecccc
Confidence 2221 0 1 111133331 1112332222 23445678899999999999996 445666677899
Q ss_pred CcEEEEECCCCe-eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEE
Q 011452 300 ENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 353 (485)
Q Consensus 300 ~tIkIWDv~tg~-~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll 353 (485)
..+-+||+--++ ....+.+|.+.|.++...+--+.|.|+. |+-|.+||.+-+.+
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 999999987543 3445679999999998888888888888 99999999865443
No 277
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.67 E-value=8.5e-07 Score=90.23 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=168.0
Q ss_pred cccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCc---EEEEeecCCcccEEEEEEeeCCCEE
Q 011452 75 EYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQ---RICFLNVTADEVIRSLFYNKNNDSL 151 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~---~l~tl~g~~~~~i~sv~~spdg~~L 151 (485)
+|...-.|++|.++++. ++.||.+-+..-|-++....++ ..+||+. |+..|..|.++|..+.|
T Consensus 5 ~~~~~~~pitchAwn~d-------------rt~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~snrI 70 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSD-------------RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSNRI 70 (361)
T ss_pred EeeeccCceeeeeecCC-------------CceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCCce
Confidence 34444556666666666 8889999999999999877544 6888987 99999999999999999
Q ss_pred EEEEeecCCCCcccceeEEEEeEe-ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE--
Q 011452 152 ITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-- 228 (485)
Q Consensus 152 as~S~d~~~d~stL~~~t~~lw~i-~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l-- 228 (485)
+++|. | |...+|.. ..|+...+..|... -....+|.++ |++..+|.||.-+.|-||-++..+-=
T Consensus 71 vtcs~----d------rnayVw~~~~~~~WkptlvLlRi--NrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 71 VTCSH----D------RNAYVWTQPSGGTWKPTLVLLRI--NRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred eEccC----C------CCccccccCCCCeeccceeEEEe--ccceeeEeec-CcCceEEeccCccEEEEEEEecccceeh
Confidence 99885 3 57778887 44544333333433 2344589998 78889999999999999987643321
Q ss_pred -EEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEE
Q 011452 229 -YSI---SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 304 (485)
Q Consensus 229 -~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkI 304 (485)
+-+ ....|.++.++|++.|++.++.| ...|+++. .|+.|+=- | +-.-++..+.
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D--~k~rVfSa--------------yIK~Vdek-p-----ap~pWgsk~P- 194 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTD--GKCRVFSA--------------YIKGVDEK-P-----APTPWGSKMP- 194 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccC--cceeEEEE--------------eeeccccC-C-----CCCCCccCCc-
Confidence 111 13478999999988888876654 56666653 22222210 0 0000111111
Q ss_pred EECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCc--EEEEeecCCCCCCCCCeeEEEECCCCCEEE
Q 011452 305 LDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 305 WDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~--ll~tl~gH~~~~~~~~v~svafSpDG~~La 381 (485)
=|+++.......+++..|.|+|.|..|+=.+ |.+|.+=|..|. .+.++.--+++ ..++.|-.+.+.++
T Consensus 195 ----FG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP-----~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 195 ----FGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLP-----LLSVSWISENSVVA 265 (361)
T ss_pred ----HHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCC-----ceeeEeecCCceee
Confidence 1444444445567999999999999999999 999999998743 46655544444 46666655555444
Q ss_pred E
Q 011452 382 S 382 (485)
Q Consensus 382 S 382 (485)
.
T Consensus 266 a 266 (361)
T KOG1523|consen 266 A 266 (361)
T ss_pred c
Confidence 3
No 278
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=96.65 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=108.4
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-----eeEEecccCCCceEEEEE
Q 011452 254 SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-----ELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-----~~~~~l~gh~~~v~avaF 328 (485)
..+..|-|-|++||- -+.|. ...-|.+..|. ..+..+..|..+|.|-..|++.+ .+.+.+ -|...|.++-.
T Consensus 231 G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~ 306 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQI 306 (425)
T ss_pred cccceeEEEEeeccc-ccccc-cchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhh
Confidence 344678888888873 34444 23456777775 33445555779999999999965 455555 47778888877
Q ss_pred cC-CCcEEEEEe-CCcEEEEeCC-CcE---EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 329 LY-ENQLFLTFR-NRTVAVWNFR-GEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 329 sp-dg~llaS~s-D~TIklWd~~-G~l---l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
+. ++|.|.+++ +|+|+|||.+ -++ |++.+||.+.+-- .-+-+.+..-.|+|+++ |..-||
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~---l~~~v~~eeg~I~s~Gd-----------DcytRi 372 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY---LPAHVKEEEGSIFSVGD-----------DCYTRI 372 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccc---cccccccccceEEEccC-----------eeEEEE
Confidence 77 888888888 9999999997 667 9999999654211 12344566678888775 799999
Q ss_pred EeCCCCeEEEEecCCC
Q 011452 403 SNILTGKCLAKIRASN 418 (485)
Q Consensus 403 Wdl~TGk~l~tl~gH~ 418 (485)
|.+..|.++.+++-..
T Consensus 373 Wsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPFPY 388 (425)
T ss_pred EecccCceeeccCCCC
Confidence 9999999999997644
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.63 E-value=0.00019 Score=69.85 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=128.6
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--EEEEc-----CCcEEEEE
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-----DKNVQEIK 240 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l~tl~-----~~~V~~Va 240 (485)
..+.-++...++. ..+.. ..+..++|+.++|.++++.. + .+.+.|+++++. +.... ....++++
T Consensus 22 ~~i~~~~~~~~~~----~~~~~---~~~~G~~~~~~~g~l~v~~~-~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~ 92 (246)
T PF08450_consen 22 GRIYRVDPDTGEV----EVIDL---PGPNGMAFDRPDGRLYVADS-G-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVA 92 (246)
T ss_dssp TEEEEEETTTTEE----EEEES---SSEEEEEEECTTSEEEEEET-T-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEE
T ss_pred CEEEEEECCCCeE----EEEec---CCCceEEEEccCCEEEEEEc-C-ceEEEecCCCcEEEEeeccCCCcccCCCceEE
Confidence 3555566544443 12332 22667888756788777553 4 445559999874 34442 23688999
Q ss_pred EcCCceEEEEEcCCCC------eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECC--CCe
Q 011452 241 ISPGIMLLIFTKASGH------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--NFE 311 (485)
Q Consensus 241 fSpg~~ll~sss~~~D------~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~--tg~ 311 (485)
+.|+|.+.++.+.... +.|-.++.. |+....+.+ ...-..++|+ +++..|.+. +..+.|.-+|+. +++
T Consensus 93 vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s-~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 93 VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFS-PDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred EcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEEC-CcchheeecccccceeEEEeccccccc
Confidence 9997777766543221 346666665 565544443 4566799997 677778765 688889999985 331
Q ss_pred e-----EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEE-CCCCCEEEEE
Q 011452 312 L-----TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISY 383 (485)
Q Consensus 312 ~-----~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDG~~LaS~ 383 (485)
. ...+.+....+-.+++..+|++.++.. .+.|.++|.+|+++..++--... +.+++| -||.+.|.-.
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~-----~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPR-----PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSS-----EEEEEEESTTSSEEEEE
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCC-----EEEEEEECCCCCEEEEE
Confidence 1 222233334588999999999999887 99999999999999887754323 889999 5776666543
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.62 E-value=1.2e-05 Score=85.58 Aligned_cols=271 Identities=14% Similarity=0.135 Sum_probs=172.9
Q ss_pred ccccccccccceEEEEEe-cCEEEEEeCCCeEEeeecc-cCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcc
Q 011452 87 MVLPFLRKRSKIIEIVAA-RDIVFALAQSGVCAAFCRE-TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSS 164 (485)
Q Consensus 87 ~~~~~~~~~s~V~~i~~s-~~~ias~s~dgtiklW~~~-tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~st 164 (485)
.|.+|+--..-|.+=++- +.+-+-..++|.-.|+..+ .|+-|+-....++ -+.=-.|.||+.|+..- .
T Consensus 217 tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvFq~----~---- 286 (668)
T COG4946 217 TFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVFQN----A---- 286 (668)
T ss_pred ceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEEec----C----
Confidence 334443333333333333 3444555667776666533 1554442222122 12233477888886522 1
Q ss_pred cceeEEEEeEeccCCc---Ccccceeee-c---cccCceEEE-EeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcE
Q 011452 165 LRCRSTRIEYIRRGKP---DAGFALFES-E---SLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNV 236 (485)
Q Consensus 165 L~~~t~~lw~i~~G~~---~~~~~lf~~-~---~~~~~~~V~-Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V 236 (485)
+.|-+.|..+-++ +-+.+++.. + ......+++ |+..+|.++|..| -|..-|.+.-.+--+..-+...|
T Consensus 287 ---GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~V 362 (668)
T COG4946 287 ---GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGV 362 (668)
T ss_pred ---CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCce
Confidence 3566666544433 233344522 1 111112455 8888999999988 45666666555544555555678
Q ss_pred EEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe
Q 011452 237 QEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV 315 (485)
Q Consensus 237 ~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~ 315 (485)
.-..|+ .+...+++.. ++ -.|-|+|.++|+. +.+....+.+.+|..+ ++|.+++++.....|-+.|+.||+....
T Consensus 363 rY~r~~~~~e~~vigt~-dg-D~l~iyd~~~~e~-kr~e~~lg~I~av~vs-~dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 363 RYRRIQVDPEGDVIGTN-DG-DKLGIYDKDGGEV-KRIEKDLGNIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred EEEEEccCCcceEEecc-CC-ceEEEEecCCceE-EEeeCCccceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 888888 3334555422 22 2899999987754 5666667899999975 7788888888888999999999998888
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-C----CcEEEEeCCC-cE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFR-N----RTVAVWNFRG-EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~s-D----~TIklWd~~G-~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
-+...+-|..++++|+++.+|-+- + +.|||+|+.| +. ++|-.+| -.+=||.|||++|-==
T Consensus 439 dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~--------DfsPaFD~d~ryLYfL 506 (668)
T COG4946 439 DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAY--------DFSPAFDPDGRYLYFL 506 (668)
T ss_pred cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCccc--------ccCcccCCCCcEEEEE
Confidence 788888999999999999999775 4 5899999985 54 3343344 3467899999887533
No 281
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.62 E-value=9e-08 Score=67.12 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=36.9
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
|+++++|++|... |++|+|+|++.+|||+|. |++|+|||
T Consensus 1 g~~~~~~~~h~~~-----i~~i~~~~~~~~~~s~~~-----------D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSS-----INSIAWSPDGNFLASGSS-----------DGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSS-----EEEEEEETTSSEEEEEET-----------TSEEEEEE
T ss_pred CeEEEEEcCCCCc-----EEEEEEecccccceeeCC-----------CCEEEEEC
Confidence 6899999999988 999999999999999997 79999997
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.58 E-value=6.3e-07 Score=93.11 Aligned_cols=156 Identities=16% Similarity=0.224 Sum_probs=107.9
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCC----eEEEEEc--C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g----~~l~tl~--~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
.+.++ +.|++||.+-.++..-++++..- +++.... . ..+..+..+ -..++....+++..+.+|++..|.
T Consensus 67 ~~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~--~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 67 LVLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED--TSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc--ceEEEEeecCCceeeeeecccccC
Confidence 45564 67888877766666556665421 1222222 1 234444443 334445555667899999988766
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe-cccCCCceEEEEEcCCCcEEEEEe-CCcEEEE
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 346 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~-l~gh~~~v~avaFspdg~llaS~s-D~TIklW 346 (485)
++-.+ ||..-+..|+++ ||++.++++-.|+.|||-....-.-++. .-||...|+.++.- ++++|+|++ |+||++|
T Consensus 144 ~~~~l-GhvSml~dVavS-~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 CEPIL-GHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-DNYLLLSGSGDKTLRLW 220 (390)
T ss_pred cchhh-hhhhhhheeeec-CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec-cCceeeecCCCCcEEEE
Confidence 65444 788888999997 7788888899999999977664444443 35899999998765 556688888 9999999
Q ss_pred eCC-CcEEEEeec
Q 011452 347 NFR-GELVTSFED 358 (485)
Q Consensus 347 d~~-G~ll~tl~g 358 (485)
|.. |+++.+++-
T Consensus 221 d~~sgk~L~t~dl 233 (390)
T KOG3914|consen 221 DITSGKLLDTCDL 233 (390)
T ss_pred ecccCCcccccch
Confidence 996 999987753
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.57 E-value=4.5e-05 Score=76.86 Aligned_cols=224 Identities=15% Similarity=0.171 Sum_probs=132.7
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCC-Ce-EEEE--Ec-C-C-cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN-YT-MLYS--IS-D-K-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~-~l~t--l~-~-~-~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
++-+ .||++||.- +|..|-+=..++ +. ++.. ++ + + .-+-++||||+++|+.+... ++|++.|+. |..|
T Consensus 3 ~~~~-~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~--G~i~vfdl~-g~~l 77 (282)
T PF15492_consen 3 LALS-SDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST--GTIRVFDLM-GSEL 77 (282)
T ss_pred eeec-CCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC--CeEEEEecc-ccee
Confidence 3444 699999864 788887776553 22 2222 22 2 1 45779999999999886544 899999995 5777
Q ss_pred EEeecC-------CcceeEEEEEecC-----CCEEEEEeCCCcEEEEECCCC-----eeEEe---cccCCCceEEEEEcC
Q 011452 271 KSFNHL-------LHRNKKVDFIEQF-----NEKLLVKQENENLQILDVRNF-----ELTEV---SRTEFMTPSAFIFLY 330 (485)
Q Consensus 271 ~tl~~~-------~~~~~~V~f~~~~-----~~~lls~s~D~tIkIWDv~tg-----~~~~~---l~gh~~~v~avaFsp 330 (485)
..++.- ...+..+.|.++. ...|++=..+|.+|=+-+..| +...+ ...+...|.++++.|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 766521 1334466786543 235667678888877765322 22222 234577999999999
Q ss_pred CCcEEEEEe--CCcEEEEeCC--CcE-EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 331 ENQLFLTFR--NRTVAVWNFR--GEL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 331 dg~llaS~s--D~TIklWd~~--G~l-l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.-++|+-++ ...-..+... |-. -+.|.+ +|..+.+.++. |+.... ..+-.+|.+
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~---------------~Pyyk~v~~~~-----~~~~~~-~~~~~~~~~ 216 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD---------------SPYYKQVTSSE-----DDITAS-SKRRGLLRI 216 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCC---------------CCcEEEccccC-----cccccc-ccccceeec
Confidence 999988776 3322222221 211 111221 23333322211 111000 123345655
Q ss_pred CCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 406 LTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 406 ~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+.+.-- .++.. . ..|..+..||||+.||+-..+|.|-||++
T Consensus 217 ~~~~~fs-~~~~~--------------------------~-----------d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 217 PSFKFFS-RQGQE--------------------------Q-----------DGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred cceeeee-ccccC--------------------------C-----------CceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 5433211 11211 0 28999999999999999999999999984
No 284
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=0.00021 Score=73.87 Aligned_cols=263 Identities=11% Similarity=0.155 Sum_probs=163.9
Q ss_pred eEEEEeEe--ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC---CCcEEEeecC--CCeEEE----EEcCCcE
Q 011452 168 RSTRIEYI--RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ---DSIYKVFDLK--NYTMLY----SISDKNV 236 (485)
Q Consensus 168 ~t~~lw~i--~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~---D~tiKlWdl~--~g~~l~----tl~~~~V 236 (485)
+.|..|++ .+|++..-+ +. +....|-.++|+ |+++.|-++.. ++.|--+.++ +|++-+ .+.++.=
T Consensus 16 ~gI~v~~ld~~~g~l~~~~-~v--~~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQ-LV--AELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CceEEEEEeCcccccchhh-hc--cccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 56777877 466663211 12 234567789997 79988777643 5677766665 377532 2234555
Q ss_pred EEEEEcCCceEEEEEcCCCCeeEEEEecCC-CeEEE---EeecCCcc----------eeEEEEEecCCCEEEEEe--CCC
Q 011452 237 QEIKISPGIMLLIFTKASGHVPLKILSIED-GTVLK---SFNHLLHR----------NKKVDFIEQFNEKLLVKQ--ENE 300 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~D~tIklWdi~t-G~~L~---tl~~~~~~----------~~~V~f~~~~~~~lls~s--~D~ 300 (485)
.-|++++++.++.++.-.. +.|.+.-+.+ |.+.. .+. |++. +-.+.|. |++.+|++.. .|
T Consensus 92 ~yvsvd~~g~~vf~AnY~~-g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~v~DLG~D- 167 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHS-GSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFT-PDGRYLVVPDLGTD- 167 (346)
T ss_pred eEEEECCCCCEEEEEEccC-ceEEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeC-CCCCEEEEeecCCc-
Confidence 7899998776655544333 7888888844 65533 222 2222 4456664 7787888864 55
Q ss_pred cEEEEECCCCeeEEecc---cCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCCC--cEEEEeecCCC----CCCCCCee
Q 011452 301 NLQILDVRNFELTEVSR---TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRG--ELVTSFEDHLL----WHPDCNTN 369 (485)
Q Consensus 301 tIkIWDv~tg~~~~~l~---gh~~~v~avaFspdg~llaS~s--D~TIklWd~~G--~ll~tl~gH~~----~~~~~~v~ 369 (485)
-|.++++..|.+...-. .....++=++|.|++++.-.-. ++||-+|..++ ..+..++-|.. .+......
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 57899999887643321 3345788899999999877776 99999999853 22222222211 11111267
Q ss_pred EEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccccc
Q 011452 370 NIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRI 448 (485)
Q Consensus 370 svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
.|.+||||++|-.+-. + ..+|-++.+.. |..|..+.-.. .|..
T Consensus 248 aIhis~dGrFLYasNR---------g-~dsI~~f~V~~~~g~L~~~~~~~-----teg~--------------------- 291 (346)
T COG2706 248 AIHISPDGRFLYASNR---------G-HDSIAVFSVDPDGGKLELVGITP-----TEGQ--------------------- 291 (346)
T ss_pred EEEECCCCCEEEEecC---------C-CCeEEEEEEcCCCCEEEEEEEec-----cCCc---------------------
Confidence 8999999999998654 1 34777777643 23344333221 0111
Q ss_pred ccchhcccCCeEEEEEcCCCCEEEEecCCC-cEEEc
Q 011452 449 RSTVAEALEDITALFYDEDRNEIYTGNRHG-LVHVW 483 (485)
Q Consensus 449 ~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg-tVklW 483 (485)
.=+...|+|+|+.|+.+++|. +|.|.
T Consensus 292 ---------~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 292 ---------FPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred ---------CCccceeCCCCCEEEEEccCCCcEEEE
Confidence 235689999999999998654 45554
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.54 E-value=4.4e-05 Score=76.95 Aligned_cols=188 Identities=13% Similarity=0.108 Sum_probs=108.1
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCC--------ceEEEEEcCCCCeeE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------KNVQEIKISPG--------IMLLIFTKASGHVPL 259 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~---------~~V~~VafSpg--------~~ll~sss~~~D~tI 259 (485)
-|+|| ||+.+||++..-|+|+|+|+- |..++.++. ..|..+.|-+- ..|++. .++.+
T Consensus 48 kl~WS-pD~tlLa~a~S~G~i~vfdl~-g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~----Y~G~L 121 (282)
T PF15492_consen 48 KLAWS-PDCTLLAYAESTGTIRVFDLM-GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN----YRGQL 121 (282)
T ss_pred EEEEC-CCCcEEEEEcCCCeEEEEecc-cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe----cccee
Confidence 58998 899999999999999999985 577777752 35777777631 223332 11233
Q ss_pred EEE--ec---CCCeEEEEeec---CCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecccCCCceEEEEE--
Q 011452 260 KIL--SI---EDGTVLKSFNH---LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIF-- 328 (485)
Q Consensus 260 klW--di---~tG~~L~tl~~---~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF-- 328 (485)
+=. ++ +..+...+|.. +.+.+..+.+.+ .-..|+++| +...-..+... .-.+.+...
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~-----------~~GLtaWRiL~ 189 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKAS-----------SCGLTAWRILS 189 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCcccccc-----------ccCceEEEEcC
Confidence 322 22 23445566653 345778888874 335666665 43321111100 111122211
Q ss_pred -cCCCcEEEEEeCCc------EEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeE
Q 011452 329 -LYENQLFLTFRNRT------VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSI 400 (485)
Q Consensus 329 -spdg~llaS~sD~T------IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI 400 (485)
+|.-+.+.++.|+. -.+|.+- .+..-....-... |..+.+||||++||+... +|+|
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~-----i~kmSlSPdg~~La~ih~-----------sG~l 253 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG-----IFKMSLSPDGSLLACIHF-----------SGSL 253 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeeeccccCCCc-----eEEEEECCCCCEEEEEEc-----------CCeE
Confidence 34444333222322 1244432 2211111111222 899999999999999987 6999
Q ss_pred EEEeCCCCeEEEEecCCC
Q 011452 401 NISNILTGKCLAKIRASN 418 (485)
Q Consensus 401 klWdl~TGk~l~tl~gH~ 418 (485)
-||++-+=++.++..-++
T Consensus 254 sLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 254 SLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred EEEecCcchhhcccchhh
Confidence 999999877777776554
No 286
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=0.00038 Score=72.03 Aligned_cols=271 Identities=13% Similarity=0.132 Sum_probs=170.4
Q ss_pred CCeEEeeeccc--CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe--ccCCcCcccceeee
Q 011452 114 SGVCAAFCRET--NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI--RRGKPDAGFALFES 189 (485)
Q Consensus 114 dgtiklW~~~t--G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i--~~G~~~~~~~lf~~ 189 (485)
++-|..|++.+ |+.-........+...=|+++|+++.|-++-..+... .+--..| .+|++. +...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~g-------gvaay~iD~~~G~Lt----~ln~ 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEG-------GVAAYRIDPDDGRLT----FLNR 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcC-------cEEEEEEcCCCCeEE----Eeec
Confidence 57788888773 4432222222445678899999999998877654322 3333344 347762 1111
Q ss_pred --ccccCceEEEEeCCCCeEEEEee-CCCcEEEeecCC-CeEEEE---E-cCC----------cEEEEEEcCCceEEEEE
Q 011452 190 --ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YTMLYS---I-SDK----------NVQEIKISPGIMLLIFT 251 (485)
Q Consensus 190 --~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~-g~~l~t---l-~~~----------~V~~VafSpg~~ll~ss 251 (485)
.....+-.|++| ++|++|.++. .-+.|.|.-++. |.+... + +.. .+....|.|++.++...
T Consensus 84 ~~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~ 162 (346)
T COG2706 84 QTLPGSPPCYVSVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP 162 (346)
T ss_pred cccCCCCCeEEEEC-CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe
Confidence 122344689998 7999998886 358899998854 665322 2 211 27889999988666654
Q ss_pred cCCCCeeEEEEecCCCeEEEEeecC---CcceeEEEEEecCCCEEEE--EeCCCcEEEEECCC--Ce--eEEec---c--
Q 011452 252 KASGHVPLKILSIEDGTVLKSFNHL---LHRNKKVDFIEQFNEKLLV--KQENENLQILDVRN--FE--LTEVS---R-- 317 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~~~---~~~~~~V~f~~~~~~~lls--~s~D~tIkIWDv~t--g~--~~~~l---~-- 317 (485)
.-..| .|.++++++|++-..-... ...-+-|+|. | +++++- .--+.||-+|.... |+ +++++ .
T Consensus 163 DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH-p-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 163 DLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH-P-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred ecCCc-eEEEEEcccCccccccccccCCCCCcceEEEc-C-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 44343 6889999998875432211 1223468897 4 445443 45899999999887 43 33332 1
Q ss_pred -cCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCC
Q 011452 318 -TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (485)
Q Consensus 318 -gh~~~v~avaFspdg~llaS~s--D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~ 392 (485)
.-..+..++..+|||+.|-.+. ...|-++.+. |..+..++ +..-+-.+ =+...|+|+|++|+.+..+
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~-~~~teg~~-PR~F~i~~~g~~Liaa~q~------ 311 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG-ITPTEGQF-PRDFNINPSGRFLIAANQK------ 311 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE-EeccCCcC-CccceeCCCCCEEEEEccC------
Confidence 1234677888999999887775 5588888873 44443332 22111112 2688999999999998863
Q ss_pred CcCCCCeEEEEeC--CCCeEE
Q 011452 393 AEGNAGSINISNI--LTGKCL 411 (485)
Q Consensus 393 ~~~~DgtIklWdl--~TGk~l 411 (485)
..+|.++.+ .||++-
T Consensus 312 ----sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 312 ----SDNITVFERDKETGRLT 328 (346)
T ss_pred ----CCcEEEEEEcCCCceEE
Confidence 456888865 566653
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=2.7e-07 Score=98.93 Aligned_cols=168 Identities=12% Similarity=0.211 Sum_probs=122.6
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-------CeeEEecccCCCceEEEEEcCCCcEEEEEeCC
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-------FELTEVSRTEFMTPSAFIFLYENQLFLTFRNR 341 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-------g~~~~~l~gh~~~v~avaFspdg~llaS~sD~ 341 (485)
.|..|.||+..++.++-+. ....+++++.|+|||+|.++. ..|.-+...|...|..+-|..|.+.++|+ |+
T Consensus 727 rL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-cC
Confidence 4667889999998888652 234567789999999999873 35888889999999999999999988653 89
Q ss_pred cEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECC--CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 342 TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS--DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 342 TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSp--DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
-|.+||. .|.++..+++..-. .. +..|.--| |..+++.+|.. ..|||+.|...++-...++-.+
T Consensus 805 giHlWDPFigr~Laq~~dapk~-~a--~~~ikcl~nv~~~iliAgcsa----------eSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKE-GA--GGNIKCLENVDRHILIAGCSA----------ESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred cceeecccccchhHhhhcCccc-CC--CceeEecccCcchheeeeccc----------hhhheeeecccccceeeEEecc
Confidence 9999997 59887755543211 11 22232223 56667766642 5899999999888777666543
Q ss_pred CCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 419 GLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|+.+. .-+++++..|.|+.||.|=..|+|-+-|
T Consensus 872 -------a~~Pn--------------------------a~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 872 -------APGPN--------------------------ALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred -------CCCCc--------------------------hheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 11111 2788999999999999998888876544
No 288
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.50 E-value=9.6e-06 Score=82.00 Aligned_cols=132 Identities=10% Similarity=0.033 Sum_probs=97.4
Q ss_pred EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE--EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeeE
Q 011452 237 QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK--SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NFELT 313 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~--tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~-tg~~~ 313 (485)
.++.|++.+.-++++ +.++.+-+=+...+.+.+ +.+.|.-..|-..|+..+++.+.+||+|+.+.-||++ -++++
T Consensus 125 lslD~~~~~~~i~vs--~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVS--DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eEEEeeccCceEEEE--cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 357788755444432 233566655555555555 7788888889999987778888889999999999999 55666
Q ss_pred Ee-cccCCCceEEEEEc-CCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 314 EV-SRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 314 ~~-l~gh~~~v~avaFs-pdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
.. .+-|.+.|.++--+ |....++||+ |.+|++||.+ |+.+..-. .. +.||-|.-+|-
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~----GGVWRi~~~p~ 264 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VG----GGVWRIKHHPE 264 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cc----cceEEEEecch
Confidence 55 56788999988765 5788999999 9999999996 88765322 11 33899999884
No 289
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.49 E-value=0.00042 Score=80.85 Aligned_cols=269 Identities=13% Similarity=0.127 Sum_probs=160.4
Q ss_pred EEEEEe--cCEEEEEeC------CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 99 IEIVAA--RDIVFALAQ------SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 99 ~~i~~s--~~~ias~s~------dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
..|..- |+++|..+- -+.+|+|+++ |++..+-.. -++.-.+++|.|.|..||++-. ..+. +.|
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~-~~~~------~~V 283 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQR-LPDR------HDV 283 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEE-cCCC------cEE
Confidence 344444 899998875 3699999998 997776553 5566778999999999988765 3343 566
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEEc---CCcEEEEEEcC--
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS---DKNVQEIKISP-- 243 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl~---~~~V~~VafSp-- 243 (485)
-++. +.|-....+.|-.......+..++|+ +|+.+||---.|. |.||-..||. +-+.+. ...+..+.|+|
T Consensus 284 vFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 284 VFFE-RNGLRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred EEEe-cCCcEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 6665 56654332222211011234579998 7999999977665 9999999998 444453 23455588887
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEE---ecCCCEEEEEeCCCcEEEEECCCCe-----eEEe
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI---EQFNEKLLVKQENENLQILDVRNFE-----LTEV 315 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~---~~~~~~lls~s~D~tIkIWDv~tg~-----~~~~ 315 (485)
-..|.+.... +.+...+ ..+.++.+ +|++.-+++-=+..+++|=.++... +...
T Consensus 361 p~~L~v~t~~---g~~~~~~---------------~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~ 422 (928)
T PF04762_consen 361 PLRLHVLTSN---GQYEIYD---------------FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE 422 (928)
T ss_pred CCEEEEEecC---CcEEEEE---------------EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence 2233332211 1111111 11233332 1222222223356777877777653 1222
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc--------EEEEeecC-----CCCCCCCCeeEEEECCCCCEE
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--------LVTSFEDH-----LLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~--------ll~tl~gH-----~~~~~~~~v~svafSpDG~~L 380 (485)
+. -...|.+|+|++++..+|.-. |++|.+|... .. +..++..+ ....+...+..++|..+..++
T Consensus 423 l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (928)
T PF04762_consen 423 LE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLL 501 (928)
T ss_pred Ec-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEE
Confidence 21 235799999999998777777 9999999953 21 11122211 111112236788888888777
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
+..+. ..+-..|.++++.
T Consensus 502 ~~~~~--------~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 502 VLSDS--------DSNQSKIVLVDID 519 (928)
T ss_pred EEEec--------CcccceEEEEEec
Confidence 77654 1123678888774
No 290
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.46 E-value=8.6e-05 Score=76.16 Aligned_cols=220 Identities=13% Similarity=0.106 Sum_probs=141.4
Q ss_pred EEEEEeeC-CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccC-ceEEEEeCCCCeEEEEe-----e
Q 011452 140 RSLFYNKN-NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW-PGFVEFDDVNGKVLTYS-----A 212 (485)
Q Consensus 140 ~sv~~spd-g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~-~~~V~Fs~pnG~~Las~-----s 212 (485)
..++.+|. +..++.+-. .+.-.-++|.++|+..+ .+....-.| -+...|| +||++|-+. +
T Consensus 8 H~~a~~p~~~~avafaRR---------PG~~~~v~D~~~g~~~~---~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARR---------PGTFALVFDCRTGQLLQ---RLWAPPGRHFYGHGVFS-PDGRLLYTTENDYET 74 (305)
T ss_pred cceeeCCCCCeEEEEEeC---------CCcEEEEEEcCCCceee---EEcCCCCCEEecCEEEc-CCCCEEEEeccccCC
Confidence 45778884 444443332 33567788988888732 222211111 1247898 799998765 3
Q ss_pred CCCcEEEeecC-CCeEEEEEcCCcE--EEEEEcCCc-eEEEEEcC---------------CCCeeEEEEecCCCeEEEE-
Q 011452 213 QDSIYKVFDLK-NYTMLYSISDKNV--QEIKISPGI-MLLIFTKA---------------SGHVPLKILSIEDGTVLKS- 272 (485)
Q Consensus 213 ~D~tiKlWdl~-~g~~l~tl~~~~V--~~VafSpg~-~ll~sss~---------------~~D~tIklWdi~tG~~L~t- 272 (485)
..|.|-|||+. +++.+-.+..+.| -++.+.|++ .|+++... ..+-.+-+.|..+|++|..
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 46899999999 7888888876544 578889877 77776443 1123566788899999876
Q ss_pred -e--ecCCcceeEEEEEecCCCEEEEE-eCCCc-------EEEEECCCCeeEEecc-------cCCCceEEEEEcCCCcE
Q 011452 273 -F--NHLLHRNKKVDFIEQFNEKLLVK-QENEN-------LQILDVRNFELTEVSR-------TEFMTPSAFIFLYENQL 334 (485)
Q Consensus 273 -l--~~~~~~~~~V~f~~~~~~~lls~-s~D~t-------IkIWDv~tg~~~~~l~-------gh~~~v~avaFspdg~l 334 (485)
| ..|+-.+.-++.. .+ +..+.+ ++.+- |=+++- ++.++.+. .=.+.+-+|+|+++|.+
T Consensus 155 ~Lp~~~~~lSiRHLa~~-~~-G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVD-GD-GTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred ecCccccccceeeEEec-CC-CcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 5 3455566667764 33 444443 43221 222222 22222221 22357899999999998
Q ss_pred EEEEe--CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 335 FLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 335 laS~s--D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
++.+| -+.+-+||.. |+++....=.. +-.|+-.++| +++|.+
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-------~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRLLGSVPLPD-------ACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EEEECCCCCEEEEEECCCCCEeeccccCc-------eeeeeecCCc-eEEeCC
Confidence 88777 8899999995 99987654332 6789988888 888754
No 291
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.44 E-value=0.00015 Score=75.75 Aligned_cols=226 Identities=12% Similarity=0.080 Sum_probs=136.2
Q ss_pred EEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEE-EEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC
Q 011452 101 IVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRS-LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 101 i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~s-v~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~ 179 (485)
++..++.|+.++.+|.+..+|.+||+.+=..+. .. .+.+ .... ++ .|+.++ .+ ..+.-.|..+|+
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~-~~~ssP~v~-~~-~v~v~~----~~------g~l~ald~~tG~ 181 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV-AG-EALSRPVVS-DG-LVLVHT----SN------GMLQALNESDGA 181 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccC-CC-ceecCCEEE-CC-EEEEEC----CC------CEEEEEEccCCC
Confidence 455688899999999999999999998765543 22 2222 1221 33 444432 12 355666778887
Q ss_pred cCcccceeeeccccC------ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC------C---cEEEEEEcC-
Q 011452 180 PDAGFALFESESLKW------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------K---NVQEIKISP- 243 (485)
Q Consensus 180 ~~~~~~lf~~~~~~~------~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~------~---~V~~VafSp- 243 (485)
. +|+...... ...-... +|.+++ ++.|+.+...|+++|+.+....- . ....+.-+|
T Consensus 182 ~-----~W~~~~~~~~~~~~~~~sP~v~--~~~v~~-~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 182 V-----KWTVNLDVPSLTLRGESAPATA--FGGAIV-GGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred E-----eeeecCCCCcccccCCCCCEEE--CCEEEE-EcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 6 555421100 0011121 344443 55688888889999887655421 0 111222334
Q ss_pred --CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc--cC
Q 011452 244 --GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR--TE 319 (485)
Q Consensus 244 --g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~--gh 319 (485)
++.+.+.+ .++.+.-.|+++|+.+.+... .....+. ..++++.+.+.|+.|..+|..+|+.+-... .+
T Consensus 254 v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~--~~~~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~ 325 (394)
T PRK11138 254 VVGGVVYALA---YNGNLVALDLRSGQIVWKREY--GSVNDFA---VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH 325 (394)
T ss_pred EECCEEEEEE---cCCeEEEEECCCCCEEEeecC--CCccCcE---EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC
Confidence 56665543 247899999999999876542 1211222 236888888999999999999998754322 11
Q ss_pred CCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeec
Q 011452 320 FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~g 358 (485)
.. ..+.+ ..+|.+++...|+.|.+.|.. |+.+...+-
T Consensus 326 ~~-~~sp~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 326 RL-LTAPV-LYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred Cc-ccCCE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 11 11111 136666655449999999995 999887653
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.44 E-value=6.8e-05 Score=79.97 Aligned_cols=191 Identities=11% Similarity=0.091 Sum_probs=126.6
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEE-EE--c------CC-------cEEEEEEcCCceEEEEEcCCCCeeEEEEecCC
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLY-SI--S------DK-------NVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~-tl--~------~~-------~V~~VafSpg~~ll~sss~~~D~tIklWdi~t 266 (485)
.||+.++.. .-|-|-++|.++-++.. .+ . .. .....+.++|.+++.-+. +.+-|.+...
T Consensus 276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR----GkaFi~~~~~ 350 (668)
T COG4946 276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR----GKAFIMRPWD 350 (668)
T ss_pred CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec----CcEEEECCCC
Confidence 368888764 46788899987655311 11 1 00 112244556777766543 3566666555
Q ss_pred CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCC-cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEE
Q 011452 267 GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE-NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 267 G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~-tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIk 344 (485)
|-.++.- |-+.|+=..+. -+++.++.+-.|+ .|-|+|.++++..+. .+..+.|.++..+|||+.++.+. ...|-
T Consensus 351 ~~~iqv~--~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 351 GYSIQVG--KKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred CeeEEcC--CCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 6666533 33567666664 4677888998777 999999999886544 45677999999999999998888 55676
Q ss_pred EEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 345 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 345 lWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+.|++ |+.. ..+... . .-+...+++|++.+||=+-. + +---+.|||.|+.+||....-
T Consensus 427 vididngnv~-~idkS~-~---~lItdf~~~~nsr~iAYafP----~---gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 427 VIDIDNGNVR-LIDKSE-Y---GLITDFDWHPNSRWIAYAFP----E---GYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEEecCCCee-Eecccc-c---ceeEEEEEcCCceeEEEecC----c---ceeeeeEEEEecCCCeEEEec
Confidence 77775 6632 222111 1 22889999999999996543 0 112368999999988876543
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4.9e-06 Score=87.92 Aligned_cols=264 Identities=14% Similarity=0.086 Sum_probs=175.7
Q ss_pred cccccceEEEEEe-cCEEEEEeCCCeEEeeeccc--CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 92 LRKRSKIIEIVAA-RDIVFALAQSGVCAAFCRET--NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 92 ~~~~s~V~~i~~s-~~~ias~s~dgtiklW~~~t--G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
.+||.-|.-++.+ -+++.++|.||..|.|.... |-.+.--...|...|-+++-|-+|-+.+|++. .| +
T Consensus 6 ymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d---~D------h 76 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVED---PD------H 76 (558)
T ss_pred hcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccC---cc------c
Confidence 4788888888888 89999999999999998442 33332233458889999999999999988662 25 7
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC----eEEEEeeCCCcEEEeecCCCeE--EE--EEcCCcEEEEE
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG----KVLTYSAQDSIYKVFDLKNYTM--LY--SISDKNVQEIK 240 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG----~~Las~s~D~tiKlWdl~~g~~--l~--tl~~~~V~~Va 240 (485)
.+|+.|+..=.....++ . ..-|+++++...-| .+-++...++.+-|.|-....| .+ .+|-.+|-.+.
T Consensus 77 s~KvfDvEn~DminmiK---L--~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIK---L--VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred ceeEEEeeccchhhhcc---c--ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE
Confidence 88888875544322111 1 12345555533334 5555666788999998653332 22 24567899999
Q ss_pred EcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC
Q 011452 241 ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF 320 (485)
Q Consensus 241 fSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~ 320 (485)
.+|-+..++|. +..+.|.-|+.+. .++-.+ ..+. |.+.+..-+-.+..-.
T Consensus 152 y~qa~Ds~vSi--D~~gmVEyWs~e~--~~qfPr------~~l~--------------------~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 152 YNQAGDSAVSI--DISGMVEYWSAEG--PFQFPR------TNLN--------------------FELKHETDLYGFPKAK 201 (558)
T ss_pred eeccccceeec--cccceeEeecCCC--cccCcc------cccc--------------------ccccccchhhcccccc
Confidence 99855555543 3337899998742 221111 1122 2222222222222334
Q ss_pred CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEee--------------------------------cCCCCCCCC
Q 011452 321 MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--------------------------------DHLLWHPDC 366 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~--------------------------------gH~~~~~~~ 366 (485)
..+.++.|+|+|..+++.+ |.+|++.++. |++++.++ .|...
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~---- 277 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST---- 277 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc----
Confidence 5678999999999999999 9999999995 87766443 22211
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
.-..+.|...|++|+=++. =-||+.|+.|++|++.|-
T Consensus 278 ~~~~~~fdes~~flly~t~------------~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 278 VGTNAVFDESGNFLLYGTI------------LGIKVINLDTNTVVRILG 314 (558)
T ss_pred ccceeEEcCCCCEEEeecc------------eeEEEEEeecCeEEEEec
Confidence 1346788899999998775 459999999999999883
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.34 E-value=2.6e-06 Score=94.11 Aligned_cols=248 Identities=13% Similarity=0.148 Sum_probs=158.6
Q ss_pred cccCCCCcccccccccccccceEEEEEe----cCEEEEEeCCCeEEeeecc--cCcEEEEeecCCcccEEEEEEeeCC-C
Q 011452 77 DTHDPKGHCSMVLPFLRKRSKIIEIVAA----RDIVFALAQSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYNKNN-D 149 (485)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~s~V~~i~~s----~~~ias~s~dgtiklW~~~--tG~~l~tl~g~~~~~i~sv~~spdg-~ 149 (485)
+-|.||.......|. .|-++..+ .++-+.....+..-+|++. +.+.|-++.-+|...|..+-|+|+. +
T Consensus 54 ~p~~ppr~l~h~tpw-----~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd 128 (1081)
T KOG0309|consen 54 DPFTPPRWLHHITPW-----QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD 128 (1081)
T ss_pred CCCCCceeeeccCcc-----hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc
Confidence 344444444444444 35555555 5555544455555688864 4666776666699999999999986 5
Q ss_pred EEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc--eEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-
Q 011452 150 SLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP--GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT- 226 (485)
Q Consensus 150 ~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~--~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~- 226 (485)
.||+.|+|. .+..||++.-.. +.... ...+. ..|+++-.|+.+||+ +..+-|++||+.-|.
T Consensus 129 Vlatcsvdt----------~vh~wd~rSp~~----p~ys~-~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~ 192 (1081)
T KOG0309|consen 129 VLATCSVDT----------YVHAWDMRSPHR----PFYST-SSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGST 192 (1081)
T ss_pred ceeeccccc----------cceeeeccCCCc----ceeee-ecccccCceeeecccCcchhhh-ccCCceEEEeccCCCc
Confidence 688888653 677899866543 22222 11111 248888788999986 568899999998554
Q ss_pred EEEEEcCC--cEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCeEE--EEeecCCcceeEEEEEecCCCEEEEEe---
Q 011452 227 MLYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVL--KSFNHLLHRNKKVDFIEQFNEKLLVKQ--- 297 (485)
Q Consensus 227 ~l~tl~~~--~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~~L--~tl~~~~~~~~~V~f~~~~~~~lls~s--- 297 (485)
.+.+++++ .|+.++|.- -+.++++ +.|+|||.||-+.-... ++.+. .-.++.-.|.|...++.+.-+
T Consensus 193 pl~s~K~~vs~vn~~~fnr~~~s~~~s~---~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg~g~~~mp~~G~ 268 (1081)
T KOG0309|consen 193 PLCSLKGHVSSVNSIDFNRFKYSEIMSS---SNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFGEGYCIMPMVGG 268 (1081)
T ss_pred ceEEecccceeeehHHHhhhhhhhhccc---CCCCceeeecccccccccceeccc-cCcceeccccccCceeEeccccCC
Confidence 78888874 688889983 5566654 56799999997643221 11111 134555556533334444422
Q ss_pred -------CCCcEEEEECCCC-eeEEecccCCCceEEEEEcCCCc----------EEEEEe-CCcEEEEeCC
Q 011452 298 -------ENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYENQ----------LFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 298 -------~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFspdg~----------llaS~s-D~TIklWd~~ 349 (485)
-+...+.|++.++ +.+.++.||.+.|-.|-|--.+. .|+|=| |.++|+|-+.
T Consensus 269 n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 269 NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 2344456776665 56899999999998776632222 578888 9999999763
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.33 E-value=0.0012 Score=77.10 Aligned_cols=249 Identities=14% Similarity=0.132 Sum_probs=131.2
Q ss_pred ccccceEEEEEe--cCEEEEEeCCCeEEee----ecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 011452 93 RKRSKIIEIVAA--RDIVFALAQSGVCAAF----CRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~~ias~s~dgtiklW----~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~ 166 (485)
.....|.++.+- .+.|..+..+|-|-+. +..+. ....-|.-+..|.+.+||||+++||.+. +...+-.|+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT--~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVT--GEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEe--CCCEEEEEe
Confidence 445667777776 6667777778888777 54422 2334555677899999999999999866 322211111
Q ss_pred eeEEEEeEeccCCcCcccceeee---ccccCce-EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEc
Q 011452 167 CRSTRIEYIRRGKPDAGFALFES---ESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242 (485)
Q Consensus 167 ~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~-~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafS 242 (485)
+=|++..-.... ...|+. -.++|=. .--|.--.||..|-...|-++. .++.+.. + .++.--.|.|-
T Consensus 149 ----~~fd~i~E~~l~-~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~--~~d~~~~--s-~dd~~~~ISWR 218 (928)
T PF04762_consen 149 ----RDFDPISEVPLD-SDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP--KVDEGKL--S-WDDGRVRISWR 218 (928)
T ss_pred ----ccceEEEEeecC-ccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC--ccccCcc--c-cCCCceEEEEC
Confidence 112221100000 001111 0111100 1123222333322111222221 1111111 1 12222345555
Q ss_pred C-CceEEEEEc--CCC-CeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe---CCCcEEEEE---CCCCee
Q 011452 243 P-GIMLLIFTK--ASG-HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILD---VRNFEL 312 (485)
Q Consensus 243 p-g~~ll~sss--~~~-D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s---~D~tIkIWD---v~tg~~ 312 (485)
. |...|++.- ..+ -..||||+-+ |++..+.+--.+--..++|- |.|..+++.+ ....|-.|. ++.|+.
T Consensus 219 GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF 296 (928)
T PF04762_consen 219 GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLRHGEF 296 (928)
T ss_pred CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence 4 444455433 122 3799999975 88766655211222367775 6677777766 356666665 333443
Q ss_pred EEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC---CcEEEEee
Q 011452 313 TEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR---GELVTSFE 357 (485)
Q Consensus 313 ~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~---G~ll~tl~ 357 (485)
.-.+......|..+.|++|+..||---...|+||-.. .-+.+.+.
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~ 344 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIR 344 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEE
Confidence 3333345668999999999999998665459999873 44666665
No 296
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.32 E-value=0.001 Score=70.35 Aligned_cols=314 Identities=13% Similarity=0.122 Sum_probs=145.7
Q ss_pred ecccCcEEEEeecCCcccEEEE-----EEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 121 CRETNQRICFLNVTADEVIRSL-----FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 121 ~~~tG~~l~tl~g~~~~~i~sv-----~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
|..||-++-.|...+. .-.++ .|.+||+.|+.+|... .. +..-+-|+.+|+..+ |-........
T Consensus 16 D~~TG~~VtrLT~~~~-~~h~~YF~~~~ft~dG~kllF~s~~d-g~------~nly~lDL~t~~i~Q---LTdg~g~~~~ 84 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDG-HSHRLYFYQNCFTDDGRKLLFASDFD-GN------RNLYLLDLATGEITQ---LTDGPGDNTF 84 (386)
T ss_dssp -TTT--EEEE-S-TTS--EE---TTS--B-TTS-EEEEEE-TT-SS-------EEEEEETTT-EEEE------SS-B-TT
T ss_pred CCCCCceEEEecCCCC-cccceeecCCCcCCCCCEEEEEeccC-CC------cceEEEEcccCEEEE---CccCCCCCcc
Confidence 4667777776655322 11212 4588999998877632 22 466666777777622 2221111111
Q ss_pred eEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEEcCCcEEEEEEc--CCceEEEEEcC-C----------------
Q 011452 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKNVQEIKIS--PGIMLLIFTKA-S---------------- 254 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl~~~~V~~VafS--pg~~ll~sss~-~---------------- 254 (485)
....+ |+.+.|.+--...+++--||++.+ ++|.++..++-...++ .+..+++.... .
T Consensus 85 -g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 85 -GGFLS-PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp -T-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred -ceEEe-cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 12223 677888887777889999999887 6889988888666665 35555543221 0
Q ss_pred ---CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe---CCC-cEEEEECCC-CeeEEecccCCCceEE-
Q 011452 255 ---GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ---ENE-NLQILDVRN-FELTEVSRTEFMTPSA- 325 (485)
Q Consensus 255 ---~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s---~D~-tIkIWDv~t-g~~~~~l~gh~~~v~a- 325 (485)
-...|.--|+.||+.-..+.. ..+..-+.|+|.++..|+-+- +|. +-|||=+++ |.-.+-+..|.....+
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEE
T ss_pred hhCCCceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccc
Confidence 113455668999987666653 245567899877666666663 555 357885543 3222333333221111
Q ss_pred -EEEcCCCcEEEEE-----e-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCC-----CC
Q 011452 326 -FIFLYENQLFLTF-----R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD-----PL 392 (485)
Q Consensus 326 -vaFspdg~llaS~-----s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d-----~~ 392 (485)
=-|.|||..+.-- . +..|.=.|.. ++..... +..| ..-.-.++||+++|-=+.|++-| ..
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~-----~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPW-----CSHFMSSPDGKLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-S-----EEEEEE-TTSSEEEEEE-------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCc-----eeeeEEcCCCCEEEecCCCCCccccccccc
Confidence 1278999876532 1 3455566664 5432222 2223 34567789999998655432211 11
Q ss_pred CcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCE-E
Q 011452 393 AEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNE-I 471 (485)
Q Consensus 393 ~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~-L 471 (485)
...++--|.|+++++++.. .|.-|. +++.+.++.+.- + . .-+.|||||+. |
T Consensus 315 ~~~~~p~i~~~~~~~~~~~-~l~~h~----------------~sw~v~~~~~q~---------~-h-Php~FSPDgk~Vl 366 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFR-KLARHD----------------TSWKVLDGDRQV---------T-H-PHPSFSPDGKWVL 366 (386)
T ss_dssp ------EEEEEETTTTEEE-EEEE-----------------------BTTBSST---------T------EE-TTSSEEE
T ss_pred eecCCcEEEEeccccCcee-eeeecc----------------CcceeecCCCcc---------C-C-CCCccCCCCCEEE
Confidence 1124557889999877653 455564 234443332111 0 1 24799999997 5
Q ss_pred EEecCCCcEEEc
Q 011452 472 YTGNRHGLVHVW 483 (485)
Q Consensus 472 aSgs~DgtVklW 483 (485)
++.+..|...|+
T Consensus 367 F~Sd~~G~~~vY 378 (386)
T PF14583_consen 367 FRSDMEGPPAVY 378 (386)
T ss_dssp EEE-TTSS-EEE
T ss_pred EECCCCCCccEE
Confidence 666677766553
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=3e-06 Score=91.12 Aligned_cols=214 Identities=18% Similarity=0.165 Sum_probs=138.7
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec-cCCcCccc-ceeee-ccccCceEEEEeCC
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR-RGKPDAGF-ALFES-ESLKWPGFVEFDDV 203 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~-~G~~~~~~-~lf~~-~~~~~~~~V~Fs~p 203 (485)
+||.+.| |.+.||.++-=.|-+..|++|. | +|+++|.++ .|.-..+. --|+- .|.+.+..+-|- .
T Consensus 727 rL~nf~G-H~~~iRai~AidNENSFiSASk----D------KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~ 794 (1034)
T KOG4190|consen 727 RLCNFTG-HQEKIRAIAAIDNENSFISASK----D------KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-A 794 (1034)
T ss_pred eeecccC-cHHHhHHHHhcccccceeeccC----C------ceEEEEEeccccCccccceeeeEhhhccCcccceeee-e
Confidence 5777777 8889999988777788888774 3 599999983 33321110 02332 355556677785 5
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCeEEEEee---
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVLKSFN--- 274 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~~L~tl~--- 274 (485)
+-+.+||+ |+-|.|||.--|+++....+ ..+.-|+--| +.-++++. .+...|||+.|...++-.-.++
T Consensus 795 ~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 795 DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred ccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeecccccceeeEEecc
Confidence 67788765 89999999888887654431 1222232223 33333332 2334799999998876544332
Q ss_pred --cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEE-EeC-C
Q 011452 275 --HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV-WNF-R 349 (485)
Q Consensus 275 --~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIkl-Wd~-~ 349 (485)
+....++.++. .+.|.+++++=.+|+|-+.|.++|+.+...+.-.-..-.++ -|..|.|++.. |.++.+ |.. +
T Consensus 872 a~~Pna~~R~iaV-a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 872 APGPNALTRAIAV-ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CCCCchheeEEEe-ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 22234566665 36788888888999999999999998775543221122222 45566677776 999999 987 5
Q ss_pred CcEEEEee
Q 011452 350 GELVTSFE 357 (485)
Q Consensus 350 G~ll~tl~ 357 (485)
|....+.+
T Consensus 950 gimh~q~k 957 (1034)
T KOG4190|consen 950 GIMHLQDK 957 (1034)
T ss_pred CeeeeccC
Confidence 87666554
No 298
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.29 E-value=1.8e-05 Score=81.41 Aligned_cols=215 Identities=14% Similarity=0.132 Sum_probs=140.3
Q ss_pred eEEEEeeCCCcEEEee-cCCCeEEEEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC----CCeEEEEeecCC
Q 011452 206 KVLTYSAQDSIYKVFD-LKNYTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIE----DGTVLKSFNHLL 277 (485)
Q Consensus 206 ~~Las~s~D~tiKlWd-l~~g~~l~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~----tG~~L~tl~~~~ 277 (485)
..+.+.|.|.++|||= .++|+---+++ ...+.++.+++.-..|...-.. +++.-..+. .-..++....|+
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n--gtvtefs~sedfnkm~~~r~~~~h~ 114 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN--GTVTEFALSEDFNKMTFLKDYLAHQ 114 (404)
T ss_pred CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec--ceEEEEEhhhhhhhcchhhhhhhhh
Confidence 3466789999999994 33455333343 3578888888755444432222 455444322 223445556788
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-----CCcEEEEeC---C
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-----NRTVAVWNF---R 349 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-----D~TIklWd~---~ 349 (485)
.++..+-|+.+ .+.+++.+.|..+.===.++|.-+ .++...-.+. +.+..+... -+.|.+-.+ .
T Consensus 115 ~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~l---g~Y~~~~~~t----~~~~d~~~~fvGd~~gqvt~lr~~~~~ 186 (404)
T KOG1409|consen 115 ARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRL---GGYNFETPAS----ALQFDALYAFVGDHSGQITMLKLEQNG 186 (404)
T ss_pred cceeeEEecCC-ceeEEEeccccceEEEeeccCCcc---cceEeeccCC----CCceeeEEEEecccccceEEEEEeecC
Confidence 99999999754 678888899988764444444322 1221111111 111111111 223333333 3
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE-EEEecCCCCCCCCccccc
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC-LAKIRASNGLPAENECSC 428 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~-l~tl~gH~~~~~~~~~~~ 428 (485)
-.++.++.+|... +..+.+.|.+++|.||.. |..|-+|||--.+- ...+.+|.+
T Consensus 187 ~~~i~~~~~h~~~-----~~~l~Wd~~~~~LfSg~~-----------d~~vi~wdigg~~g~~~el~gh~~--------- 241 (404)
T KOG1409|consen 187 CQLITTFNGHTGE-----VTCLKWDPGQRLLFSGAS-----------DHSVIMWDIGGRKGTAYELQGHND--------- 241 (404)
T ss_pred CceEEEEcCcccc-----eEEEEEcCCCcEEEeccc-----------cCceEEEeccCCcceeeeeccchh---------
Confidence 5688999999987 999999999999999987 79999999964332 345677863
Q ss_pred CCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 429 SGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|.+|.+-+--+.|.|+++||.|-+|+
T Consensus 242 -----------------------------kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 242 -----------------------------KVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred -----------------------------hhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 788888888889999999999999997
No 299
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.25 E-value=0.00013 Score=73.28 Aligned_cols=226 Identities=11% Similarity=-0.007 Sum_probs=147.3
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcE------EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNV------QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V------~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
+-.+||-|++-+..++|.+.+.+-...+.+... .-.+.+.- .+.++ +.|.|+|+.+++.+ .++... |-
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~-~~~i~---sndht~k~~~~~~~-s~~~~~-h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKF-PLNIA---SNDHTGKTMVVSGD-SNKFAV-HN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccc-ceeec---cCCcceeEEEEecC-ccccee-ec
Confidence 445889999999999999987664333332222 22333322 23343 46689999998654 333322 22
Q ss_pred cc--eeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEE--ecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--
Q 011452 278 HR--NKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTE--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 349 (485)
Q Consensus 278 ~~--~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~--~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-- 349 (485)
.. ..+++.+ +|+..+++-++-..|-.+.+.. ++.+. ....-.+.-....|+....+||.+. |+++.|||++
T Consensus 157 ~~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 157 QNLTQNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred cccceeeeEEc-CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 22 4577765 6776666678889999998875 33322 2333344556778999999999999 9999999996
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCC--CE-EEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCccc
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQ--DL-IISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENEC 426 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG--~~-LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~ 426 (485)
+.+..+... +-.|+++.++.+-|||-| ++ ++|-. =+-+.+-|+.+++-.+.+.-.++
T Consensus 236 ~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEh------------fs~~hv~D~R~~~~~q~I~i~~d------- 295 (344)
T KOG4532|consen 236 ATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFISEH------------FSRVHVVDTRNYVNHQVIVIPDD------- 295 (344)
T ss_pred ccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEecC------------cceEEEEEcccCceeeEEecCcc-------
Confidence 665544332 233455669999999865 23 33322 26788999999887777765443
Q ss_pred ccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCc
Q 011452 427 SCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGL 479 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dgt 479 (485)
+.+.- +...|..-.|+.++..++..+++..
T Consensus 296 ------------~~~~~-----------~tq~ifgt~f~~~n~s~~v~~e~~~ 325 (344)
T KOG4532|consen 296 ------------VERKH-----------NTQHIFGTNFNNENESNDVKNELQG 325 (344)
T ss_pred ------------ccccc-----------cccccccccccCCCcccccccchhh
Confidence 11111 1136888899999998888887653
No 300
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.18 E-value=0.0013 Score=68.20 Aligned_cols=240 Identities=15% Similarity=0.144 Sum_probs=134.7
Q ss_pred CCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC-----------
Q 011452 113 QSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD----------- 181 (485)
Q Consensus 113 ~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~----------- 181 (485)
..+..-++|+++++... +.. ....+....+||||+.||.+. + +.+-+.+...|+..
T Consensus 21 ~~~~y~i~d~~~~~~~~-l~~-~~~~~~~~~~sP~g~~~~~v~----~-------~nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITP-LTP-PPPKLQDAKWSPDGKYIAFVR----D-------NNLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp EEEEEEEEETTTTEEEE-SS--EETTBSEEEE-SSSTEEEEEE----T-------TEEEEESSTTSEEEESES--TTTEE
T ss_pred cceeEEEEecCCCceEE-CcC-CccccccceeecCCCeeEEEe----c-------CceEEEECCCCCeEEeccccceeEE
Confidence 35678899999876554 433 245688999999999999876 2 24555554444321
Q ss_pred cccc--eeeeccccCceEEEEeCCCCeEEEEeeCC-CcEEEeecCCCeEEEEEcCC----cEEEEEEc-CCceEEEEEcC
Q 011452 182 AGFA--LFESESLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTMLYSISDK----NVQEIKIS-PGIMLLIFTKA 253 (485)
Q Consensus 182 ~~~~--lf~~~~~~~~~~V~Fs~pnG~~Las~s~D-~tiKlWdl~~g~~l~tl~~~----~V~~VafS-pg~~ll~sss~ 253 (485)
.|.+ +.+.|-+.....+-|| |||+.||....| ..|+.+.+- ...... .+..+++- ||.....
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~~-----~~~~~~~~yp~~~~~~YPk~G~~np~---- 157 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPLP-----DYSPPDSQYPEVESIRYPKAGDPNPR---- 157 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEEE-----EESSSTESS-EEEEEE--BTTS---E----
T ss_pred cCccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEee-----ccCCccccCCcccccccCCCCCcCCc----
Confidence 0011 1111224445578898 899999998644 444444321 111221 36666665 5665421
Q ss_pred CCCeeEEEEecCCCeEEE--Ee---ecCCcceeEEEEEecCCCEEEEE--e---CCCcEEEEECCCCeeEEeccc-CCCc
Q 011452 254 SGHVPLKILSIEDGTVLK--SF---NHLLHRNKKVDFIEQFNEKLLVK--Q---ENENLQILDVRNFELTEVSRT-EFMT 322 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~--tl---~~~~~~~~~V~f~~~~~~~lls~--s---~D~tIkIWDv~tg~~~~~l~g-h~~~ 322 (485)
..+.|+|+++|+... .. ..-...+..|.|+ +++.++++. . ..-.+.+.|+.++++...... ...+
T Consensus 158 ---v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~-~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 158 ---VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWS-PDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp ---EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEE-ETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred ---eEEEEEECCCCcEEEeeeccccCCCccCcccceec-CCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 578889999998632 22 1223445689997 445546664 3 334567779988876444322 2223
Q ss_pred e---EEEEEc-CCCcEEEEEe--CCcEEEE--eCCCcEEEEeecCCCCCCCCCee-EEEECCCCCEEEEEe
Q 011452 323 P---SAFIFL-YENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNTN-NIYITSDQDLIISYC 384 (485)
Q Consensus 323 v---~avaFs-pdg~llaS~s--D~TIklW--d~~G~ll~tl~gH~~~~~~~~v~-svafSpDG~~LaS~s 384 (485)
| ..+.|. +++..++-.+ ||--.|+ +.+|...+-|+... |. |. -+.++++++.|.=-+
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~-~~----V~~i~~~d~~~~~iyf~a 299 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD-WE----VTSILGWDEDNNRIYFTA 299 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS-S-----EEEEEEEECTSSEEEEEE
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc-ee----ecccceEcCCCCEEEEEe
Confidence 2 356665 7777666555 7755555 55677777776443 41 64 478899988776433
No 301
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.17 E-value=6.3e-05 Score=76.24 Aligned_cols=194 Identities=11% Similarity=-0.043 Sum_probs=126.7
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE--EEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecC-CCeEE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE-DGTVL 270 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~--tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~-tG~~L 270 (485)
.+.|+ +-|.-++++-.++.|-+=+-....+.. +++ +-+.|..+|+. +--++.++ ++|..+.-||+. -++.+
T Consensus 126 slD~~-~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytG--gDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 126 SLDIS-TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG--GDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred EEEee-ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEec--CCCceEEEEEecCCccee
Confidence 35676 456667777667777644444333333 444 34789999994 44455554 356899999998 55666
Q ss_pred EE-eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCc--EEEEEeCCcEEEE
Q 011452 271 KS-FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQ--LFLTFRNRTVAVW 346 (485)
Q Consensus 271 ~t-l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~--llaS~sD~TIklW 346 (485)
.+ -+-|...|-+|.-++|++-.+++|++|++|++||.++ ++++..- .-.+.||.+..+|.-+ +|+.+--+-.||-
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 55 4456677888888888888999999999999999995 6654432 1236899999988544 4444444446777
Q ss_pred eCC---Cc---EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE-EEeCCCCe
Q 011452 347 NFR---GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN-ISNILTGK 409 (485)
Q Consensus 347 d~~---G~---ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk-lWdl~TGk 409 (485)
+.+ +| .+.+.+.|..- +..-.+..-...||++|. -|+.|+ +|-.-||.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl-----~YG~DWd~~~~~lATCsF----------YDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSL-----CYGGDWDSKDSFLATCSF----------YDKKIRQLWLHITGE 336 (339)
T ss_pred Eecccccchheeeeccccccce-----eeccccccccceeeeeec----------cccceeeeeeeccCC
Confidence 773 55 45556666533 223333222356899876 378866 88665553
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.16 E-value=3.3e-05 Score=78.82 Aligned_cols=266 Identities=14% Similarity=0.201 Sum_probs=153.5
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCc-----EEEEeecCCc------------ccEEEEEEeeCCC---EE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ-----RICFLNVTAD------------EVIRSLFYNKNND---SL 151 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~-----~l~tl~g~~~------------~~i~sv~~spdg~---~L 151 (485)
....|.+|.|. |.+||+|...|.+-+|.++.-. .+..+++ |+ +.|..|-+-.+++ .|
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQs-he~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQS-HELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcc-cccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 44568888998 9999999999999999877432 1111333 32 2466776655543 34
Q ss_pred EEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-------
Q 011452 152 ITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------- 224 (485)
Q Consensus 152 as~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~------- 224 (485)
.+ +.| ++++||-|....+ ++.....+ ..++.| |-.|. |+|-. .+++=.+..
T Consensus 104 ls-----tNd------ktiKlWKiyeknl----k~va~nnl--s~~~~~-~~~g~-~~s~~---~l~lprls~hd~iiaa 161 (460)
T COG5170 104 LS-----TND------KTIKLWKIYEKNL----KVVAENNL--SDSFHS-PMGGP-LTSTK---ELLLPRLSEHDEIIAA 161 (460)
T ss_pred Ee-----cCC------ceeeeeeeecccc----hhhhcccc--cccccc-ccCCC-cCCHH---HhhcccccccceEEEe
Confidence 44 245 7999999865543 11111111 112222 12222 22111 111111110
Q ss_pred -CeEEE-EEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC--CCeE-EEEeec-----CCcceeEEEEEecCCCEEE
Q 011452 225 -YTMLY-SISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE--DGTV-LKSFNH-----LLHRNKKVDFIEQFNEKLL 294 (485)
Q Consensus 225 -g~~l~-tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~--tG~~-L~tl~~-----~~~~~~~V~f~~~~~~~ll 294 (485)
..-+| ..|...|++|.|..+...+.++ +|-.|-||+++ +|.- +..++- ++.-+.+..|+|.-...+.
T Consensus 162 ~p~rvyaNaH~yhiNSiS~NsD~et~lSa---DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm 238 (460)
T COG5170 162 KPCRVYANAHPYHINSISFNSDKETLLSA---DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM 238 (460)
T ss_pred ccceeccccceeEeeeeeecCchheeeec---cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence 01112 2234578999999654444442 45799999875 3221 111221 1122346677654444555
Q ss_pred EEeCCCcEEEEECCCCe-eE---E----e--------cccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC--CcEEEEe
Q 011452 295 VKQENENLQILDVRNFE-LT---E----V--------SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSF 356 (485)
Q Consensus 295 s~s~D~tIkIWDv~tg~-~~---~----~--------l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~--G~ll~tl 356 (485)
-++..|+|+|-|++... |. . + +.+-...|+.+-|+|.|++++|-.=-||||||++ ..++.|.
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceee
Confidence 57899999999999432 11 0 1 1122346788899999999998777899999995 6788887
Q ss_pred ecCCC--------CCCCCC--eeEEEECCCCCEEEEEec
Q 011452 357 EDHLL--------WHPDCN--TNNIYITSDQDLIISYCK 385 (485)
Q Consensus 357 ~gH~~--------~~~~~~--v~svafSpDG~~LaS~s~ 385 (485)
.=|.. ...++. --.+.||-|.+.+.|||.
T Consensus 319 ~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 319 PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred chHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence 55542 111221 134789999999999886
No 303
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.012 Score=62.01 Aligned_cols=270 Identities=11% Similarity=0.109 Sum_probs=180.8
Q ss_pred EEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCce
Q 011452 117 CAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG 196 (485)
Q Consensus 117 iklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~ 196 (485)
+.+++..+.+....+.. .. ....+.++|+|..+..+.... ++ +-.+... .+. ...+-.....++.
T Consensus 13 ~~v~~~~~~~~~~~~~~-~~-~~~~v~~~~~g~~~~v~~~~~-~~----------~~~~~~~-~n~-~~~~~~~g~~~p~ 77 (381)
T COG3391 13 VSVINTGTNKVTAAISL-GR-GPGGVAVNPDGTQVYVANSGS-ND----------VSVIDAT-SNT-VTQSLSVGGVYPA 77 (381)
T ss_pred eEEEeecccEEEEEeec-CC-CCceeEEcCccCEEEEEeecC-ce----------eeecccc-cce-eeeeccCCCcccc
Confidence 55566555555555543 22 568899999997765544322 11 1111122 110 1111110114455
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
.+++++...+..+....+.+|.+-|..+.+.+.++. +..-..++++| +..+.++.......++-+.|-.+++++++..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 788875555688888888999999999888888875 55778999997 5476666553245899999999999998865
Q ss_pred cCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEE-e---cccCCCceEEEEEcCCCcEEEEEe--C--CcEEE
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTE-V---SRTEFMTPSAFIFLYENQLFLTFR--N--RTVAV 345 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~-~---l~gh~~~v~avaFspdg~llaS~s--D--~TIkl 345 (485)
--... ..+++. |+++++.+. ..+++|-+.|.++-...+ . ..+-...+.-++++|+|+.+-... + ++|..
T Consensus 158 vG~~P-~~~a~~-p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 158 VGNTP-TGVAVD-PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred cCCCc-ceEEEC-CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 32223 678875 788888887 589999999988777664 1 112344678899999999655554 3 58888
Q ss_pred EeCC-CcEEEE-eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 346 WNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 346 Wd~~-G~ll~t-l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
-|.. +....+ +..-..+ -..++++|+|+.+-.... ..+++.+-|..+.+...++....
T Consensus 236 id~~~~~v~~~~~~~~~~~-----~~~v~~~p~g~~~yv~~~----------~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 236 IDTATGNVTATDLPVGSGA-----PRGVAVDPAGKAAYVANS----------QGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred EeCCCceEEEeccccccCC-----CCceeECCCCCEEEEEec----------CCCeEEEEeCCCCceeeeecccc
Confidence 8886 665554 2222212 357999999999988754 25889999999888888876655
No 304
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.10 E-value=0.0051 Score=66.81 Aligned_cols=279 Identities=13% Similarity=0.112 Sum_probs=152.6
Q ss_pred EecCEEEEEeCCCeEEeeecccCcEEEEeecCCc-----c--cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe
Q 011452 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTAD-----E--VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (485)
Q Consensus 103 ~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~-----~--~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i 175 (485)
+.++.|+.++.++.+...|.+||+.+=....... . ..+.+++. +++.++.++. + ..+.-.|.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~------g~v~AlD~ 127 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----D------GRLVALDA 127 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----C------CeEEEEEC
Confidence 4578888899999999999999998765443211 0 01111221 2245555332 2 35556677
Q ss_pred ccCCcCcccceeeeccccC-------ceEEEEeCCCCeEEEEe--------eCCCcEEEeecCCCeEEEEEcC-------
Q 011452 176 RRGKPDAGFALFESESLKW-------PGFVEFDDVNGKVLTYS--------AQDSIYKVFDLKNYTMLYSISD------- 233 (485)
Q Consensus 176 ~~G~~~~~~~lf~~~~~~~-------~~~V~Fs~pnG~~Las~--------s~D~tiKlWdl~~g~~l~tl~~------- 233 (485)
++|+. +|+.+.... .....+. ++.+++.. ..++.+.-.|+++|+.+.....
T Consensus 128 ~TG~~-----~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~ 200 (488)
T cd00216 128 ETGKQ-----VWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA 200 (488)
T ss_pred CCCCE-----eeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC
Confidence 88886 566532111 0122343 35554432 2367888889999998766531
Q ss_pred ---------------CcEE-EEEEcC-CceEEEEEcCC---------------CCeeEEEEecCCCeEEEEeecCCccee
Q 011452 234 ---------------KNVQ-EIKISP-GIMLLIFTKAS---------------GHVPLKILSIEDGTVLKSFNHLLHRNK 281 (485)
Q Consensus 234 ---------------~~V~-~VafSp-g~~ll~sss~~---------------~D~tIklWdi~tG~~L~tl~~~~~~~~ 281 (485)
..|+ ..++.+ ++++.+..... .+..|--+|++||+++-.++.-.+..+
T Consensus 201 ~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~ 280 (488)
T cd00216 201 FPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW 280 (488)
T ss_pred CCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc
Confidence 1122 245554 45555543221 124788999999999988762112111
Q ss_pred ------EEEEEe---cCCC---EEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEE-----------
Q 011452 282 ------KVDFIE---QFNE---KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF----------- 338 (485)
Q Consensus 282 ------~V~f~~---~~~~---~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~----------- 338 (485)
...+.. -+++ .+++++.++.+...|.+||+.+-....- ....+.+| +.+++.+
T Consensus 281 ~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~ 356 (488)
T cd00216 281 DYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQK 356 (488)
T ss_pred ccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccc
Confidence 111110 1222 3566789999999999999986543210 01122233 3333311
Q ss_pred ------e-CCcEEEEeCC-CcEEEEeecCC---CCCCC-CC-eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 339 ------R-NRTVAVWNFR-GELVTSFEDHL---LWHPD-CN-TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 339 ------s-D~TIklWd~~-G~ll~tl~gH~---~~~~~-~~-v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
. ++.+---|.. |+.+-+.+-.. .|... .. ...++. .|.+|..++. ||.|.-.|.
T Consensus 357 ~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~-----------dG~l~ald~ 423 (488)
T cd00216 357 KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAA-----------DGYFRAFDA 423 (488)
T ss_pred cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECC-----------CCeEEEEEC
Confidence 1 3445555553 66554443210 00000 00 112222 4567777765 799999999
Q ss_pred CCCeEEEEecC
Q 011452 406 LTGKCLAKIRA 416 (485)
Q Consensus 406 ~TGk~l~tl~g 416 (485)
.||+.+.+.+-
T Consensus 424 ~tG~~lW~~~~ 434 (488)
T cd00216 424 TTGKELWKFRT 434 (488)
T ss_pred CCCceeeEEEC
Confidence 99999988754
No 305
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.08 E-value=0.00042 Score=76.99 Aligned_cols=186 Identities=17% Similarity=0.123 Sum_probs=117.0
Q ss_pred CCCeEEE-EeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 203 VNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 203 pnG~~La-s~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
|||+.|. ++-..+.+-+.|.++.+...++. +.+-.-++++|++.++..++- |.|.|..+..+.-. ..-
T Consensus 202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsy---------NsE~G~tl~em~a~-e~d 271 (635)
T PRK02888 202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCY---------NSEEGVTLAEMMAA-ERD 271 (635)
T ss_pred CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEecc---------CcccCcceeeeccc-cCc
Confidence 6887653 33456788888888877777665 445567899986666655431 22334433333210 111
Q ss_pred eEEEEEe-------cCCCEEEEEeCCCcEEEEECCC-----CeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEE
Q 011452 281 KKVDFIE-------QFNEKLLVKQENENLQILDVRN-----FELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW 346 (485)
Q Consensus 281 ~~V~f~~-------~~~~~lls~s~D~tIkIWDv~t-----g~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklW 346 (485)
..+.|.. ++|....+ .+++|.+.|.++ .+.+..+. -...+..+++||||+++..++ +.||.|-
T Consensus 272 ~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 272 WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 3333321 23444444 478999999998 34444432 334788899999999988887 9999999
Q ss_pred eCC-Cc------------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC------
Q 011452 347 NFR-GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT------ 407 (485)
Q Consensus 347 d~~-G~------------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T------ 407 (485)
|++ -+ ++...+--..+ .-.+|.++|....|-.- |..|-.||+.+
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevevGlGP------LHTaFDg~G~aytslf~-----------dsqv~kwn~~~a~~~~~ 411 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPELGLGP------LHTAFDGRGNAYTTLFL-----------DSQIVKWNIEAAIRAYK 411 (635)
T ss_pred EChhhhhhhhccCCccceEEEeeccCCCc------ceEEECCCCCEEEeEee-----------cceeEEEehHHHHHHhc
Confidence 985 33 23333321211 35889999987777665 67888899987
Q ss_pred ----CeEEEEecCCC
Q 011452 408 ----GKCLAKIRASN 418 (485)
Q Consensus 408 ----Gk~l~tl~gH~ 418 (485)
...+.++.-|.
T Consensus 412 g~~~~~v~~k~dV~y 426 (635)
T PRK02888 412 GEKVDPIVQKLDVHY 426 (635)
T ss_pred cccCCcceecccCCC
Confidence 34566665444
No 306
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=2.2e-06 Score=96.04 Aligned_cols=188 Identities=17% Similarity=0.206 Sum_probs=132.4
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecC-CCeEEEE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-DGTVLKS 272 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~-tG~~L~t 272 (485)
.++|+ .+...|+-|+.-|.||++++.+|.+.-+. |+..|.-|--| +|.++|++++.+. --..||+.. +|...++
T Consensus 1106 c~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~-PlsaLW~~~s~~~~~Hs 1183 (1516)
T KOG1832|consen 1106 CIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS-PLSALWDASSTGGPRHS 1183 (1516)
T ss_pred eEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC-chHHHhccccccCcccc
Confidence 58898 68889999999999999999999977554 56688888888 6778887765442 234789864 4555666
Q ss_pred eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe-ccc---CCCceEEEEEcCCCcEEEEEeCCcEEEEeC
Q 011452 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV-SRT---EFMTPSAFIFLYENQLFLTFRNRTVAVWNF 348 (485)
Q Consensus 273 l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~-l~g---h~~~v~avaFspdg~llaS~sD~TIklWd~ 348 (485)
|.+ -..|.|+.. -+.-+.|..-.-.-|||++|+..+.+ +.+ -+-.=+.+.|||+.++++ .||. |||+
T Consensus 1184 f~e----d~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndGv--LWDv 1254 (1516)
T KOG1832|consen 1184 FDE----DKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDGV--LWDV 1254 (1516)
T ss_pred ccc----cceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCce--eeee
Confidence 653 357778632 23334455556788999999987776 322 111225566899888875 3553 8999
Q ss_pred C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 349 ~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+ -+-++.|..-... -+=.|.|.|.-++.-+. |||+.|-+.|++...-
T Consensus 1255 R~~~aIh~FD~ft~~------~~G~FHP~g~eVIINSE----------------IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1255 RIPEAIHRFDQFTDY------GGGGFHPSGNEVIINSE----------------IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred ccHHHHhhhhhheec------ccccccCCCceEEeech----------------hhhhHHHHHHhcCccc
Confidence 7 6667766544321 23358999999998764 8999998888776553
No 307
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.04 E-value=0.02 Score=60.07 Aligned_cols=245 Identities=18% Similarity=0.168 Sum_probs=141.9
Q ss_pred cEEEEEEeeCCCEEEEE-EeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCce--EEEEeCCCCeEEEEeeCC
Q 011452 138 VIRSLFYNKNNDSLITV-SVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG--FVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~-S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~--~V~Fs~pnG~~Las~s~D 214 (485)
.+....+||||+.||.+ +..|++. .++++.|+.+|+.. .. .+..+. +++|. +||+.|.+...|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~------~~l~v~Dl~tg~~l------~d-~i~~~~~~~~~W~-~d~~~~~y~~~~ 190 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEW------YTLRVFDLETGKFL------PD-GIENPKFSSVSWS-DDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSE------EEEEEEETTTTEEE------EE-EEEEEESEEEEEC-TTSSEEEEEECS
T ss_pred EeeeeeECCCCCEEEEEecCCCCce------EEEEEEECCCCcCc------CC-cccccccceEEEe-CCCCEEEEEEeC
Confidence 34467899999998865 5555555 67889999999762 21 112222 38997 799998888655
Q ss_pred C-----------cEEEeecCCCe----EEEEEcCC-c-EEEEEEcC-CceEEEEEcCCCC-eeEEEEecCCC----eEEE
Q 011452 215 S-----------IYKVFDLKNYT----MLYSISDK-N-VQEIKISP-GIMLLIFTKASGH-VPLKILSIEDG----TVLK 271 (485)
Q Consensus 215 ~-----------tiKlWdl~~g~----~l~tl~~~-~-V~~VafSp-g~~ll~sss~~~D-~tIklWdi~tG----~~L~ 271 (485)
. .|+.|.+.+.. +++.-.+. . ...+..|+ +..+++.+....+ ..+.+.++.++ ...+
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 4 37788877653 45555443 3 67888996 5555655555555 77888899876 2333
Q ss_pred EeecCC-cceeEEEEEecCCCEEEEEe----CCCcEEEEECCCCee---EEecccCCCceEEEEEcC-CCcEEEEEe-CC
Q 011452 272 SFNHLL-HRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNFEL---TEVSRTEFMTPSAFIFLY-ENQLFLTFR-NR 341 (485)
Q Consensus 272 tl~~~~-~~~~~V~f~~~~~~~lls~s----~D~tIkIWDv~tg~~---~~~l~gh~~~v~avaFsp-dg~llaS~s-D~ 341 (485)
.+.... +....|.. .++.+.+-+ .++.|---++.+... ..++..|...+.-..+.. .+.++++-. |+
T Consensus 271 ~l~~~~~~~~~~v~~---~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 271 LLSPREDGVEYYVDH---HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEESSSS-EEEEEE---ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEeCCCCceEEEEEc---cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 333222 22233333 256555532 446666667777652 335555555333333333 445555555 55
Q ss_pred --cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE-EEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 342 --TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 342 --TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L-aS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
.|+++++. |.....+.--.. +.|.++...++++.+ ++++. .-.-.+|--+|+.||+..
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~p~~----g~v~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPLPEA----GSVSGVSGDFDSDELRFSYSS--------FTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEEETT-TEEEEEEESSSS----SEEEEEES-TT-SEEEEEEEE--------TTEEEEEEEEETTTTCEE
T ss_pred ccEEEEEECCCCcEEeeecCCcc----eEEeccCCCCCCCEEEEEEeC--------CCCCCEEEEEECCCCCEE
Confidence 78899998 887766653221 225666655665544 34332 112368999999998763
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=2.7e-06 Score=95.35 Aligned_cols=246 Identities=15% Similarity=0.167 Sum_probs=151.8
Q ss_pred cccchhhhhhhcccccccCccc----ccchhHHHhhhccccccccccCCCCcccccccccccccceEEEEEe--cCEEEE
Q 011452 37 GFVNSVKKLQRREISSKRDRAF----TMTDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFA 110 (485)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s--~~~ias 110 (485)
...|---.|-+||.-....+-. ..-+.=-|||+++ .|--|+.- -..++|+ .+.|+.
T Consensus 1057 ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~---~frd~~~~---------------fTc~afs~~~~hL~v 1118 (1516)
T KOG1832|consen 1057 APLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWR---SFRDETAL---------------FTCIAFSGGTNHLAV 1118 (1516)
T ss_pred cchhhhhcccchhhcCcccccccCcccchhhHhhcccch---hhhccccc---------------eeeEEeecCCceEEe
Confidence 3555566677777765543322 2333334566554 33333332 3455566 788999
Q ss_pred EeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec-cCCcCcccceeee
Q 011452 111 LAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR-RGKPDAGFALFES 189 (485)
Q Consensus 111 ~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~-~G~~~~~~~lf~~ 189 (485)
|+..|.+|++|..+|+.....|. |...|.-|--|.||.++.+.|..++- -.-||+.. .|++ ...|..
T Consensus 1119 G~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~P--------lsaLW~~~s~~~~---~Hsf~e 1186 (1516)
T KOG1832|consen 1119 GSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSP--------LSALWDASSTGGP---RHSFDE 1186 (1516)
T ss_pred eeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCc--------hHHHhccccccCc---cccccc
Confidence 99999999999999999998888 88999999999999999887764422 23467752 2222 122332
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-cC-----CcEEEEEEcCCceEEEEEcCCCCeeEEEEe
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SD-----KNVQEIKISPGIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~~-----~~V~~VafSpg~~ll~sss~~~D~tIklWd 263 (485)
. ..|+|+.. -+.-+-|..-...-|+|++|+..+.++ .+ ..-+.+.|||...|+.- |+ -|||
T Consensus 1187 d-----~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-----dG--vLWD 1253 (1516)
T KOG1832|consen 1187 D-----KAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-----DG--VLWD 1253 (1516)
T ss_pred c-----ceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-----Cc--eeee
Confidence 1 26899732 222222323356779999999977773 32 12367899997776542 22 3899
Q ss_pred cCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE
Q 011452 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 264 i~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l 334 (485)
+..-+-++.|......... -|. |.|..+++-+ .|||++|.++++....-. --+|.|...|..
T Consensus 1254 vR~~~aIh~FD~ft~~~~G-~FH-P~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1254 VRIPEAIHRFDQFTDYGGG-GFH-PSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDV 1315 (1516)
T ss_pred eccHHHHhhhhhheecccc-ccc-CCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccc
Confidence 8877667666432222112 354 5555566654 499999998776543211 134556655553
No 309
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.96 E-value=0.053 Score=59.83 Aligned_cols=281 Identities=14% Similarity=0.165 Sum_probs=157.9
Q ss_pred ecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccE----------EEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVI----------RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 104 s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i----------~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
.+++|+.++.++.+...|.+||+.+=.........+ +.+++. ++.|+.++. +. .+---
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~---dg-------~l~AL 135 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTL---DA-------RLVAL 135 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcC---CC-------EEEEE
Confidence 478888899999999999999998876543211111 223332 234544332 22 23333
Q ss_pred EeccCCcCcccceeeeccccCce-EEEEeC---CCCeEEEEee-----CCCcEEEeecCCCeEEEEEcC-----------
Q 011452 174 YIRRGKPDAGFALFESESLKWPG-FVEFDD---VNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD----------- 233 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~-~V~Fs~---pnG~~Las~s-----~D~tiKlWdl~~g~~l~tl~~----------- 233 (485)
|..+|++ +|+.....+.. ....++ .+|++++..+ .++.|.-.|+++|+.+-.+..
T Consensus 136 Da~TGk~-----~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~ 210 (527)
T TIGR03075 136 DAKTGKV-----VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKA 210 (527)
T ss_pred ECCCCCE-----EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccc
Confidence 6678886 45542111100 000011 1566666433 368899999999998755431
Q ss_pred ----------------------CcEEE-EEEcC-CceEEEEEcC----C-----CC----eeEEEEecCCCeEEEEeecC
Q 011452 234 ----------------------KNVQE-IKISP-GIMLLIFTKA----S-----GH----VPLKILSIEDGTVLKSFNHL 276 (485)
Q Consensus 234 ----------------------~~V~~-VafSp-g~~ll~sss~----~-----~D----~tIklWdi~tG~~L~tl~~~ 276 (485)
..||. .++-| -+.+.+..+. . .| ..|-=.|++||+..-.|+..
T Consensus 211 ~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~ 290 (527)
T TIGR03075 211 DKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT 290 (527)
T ss_pred ccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC
Confidence 12332 34555 2333222211 0 11 26667799999999888854
Q ss_pred CcceeEE-------EEE-ecCCC--EEE-EEeCCCcEEEEECCCCeeEEe--cccCCCce--------------------
Q 011452 277 LHRNKKV-------DFI-EQFNE--KLL-VKQENENLQILDVRNFELTEV--SRTEFMTP-------------------- 323 (485)
Q Consensus 277 ~~~~~~V-------~f~-~~~~~--~ll-s~s~D~tIkIWDv~tg~~~~~--l~gh~~~v-------------------- 323 (485)
.|-++.- -+- +.+++ +++ .++.++.+-+.|-+||+++.. ...+..++
T Consensus 291 ~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~ 370 (527)
T TIGR03075 291 PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSAD 370 (527)
T ss_pred CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCC
Confidence 4444422 221 12344 344 568999999999999998621 00000000
Q ss_pred -------------------EEEEEcCCCcEEEEEe-C---------------------------------CcEEEEeCC-
Q 011452 324 -------------------SAFIFLYENQLFLTFR-N---------------------------------RTVAVWNFR- 349 (485)
Q Consensus 324 -------------------~avaFspdg~llaS~s-D---------------------------------~TIklWd~~- 349 (485)
...++.|+..++.... + +.|.-||+.
T Consensus 371 ~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~t 450 (527)
T TIGR03075 371 GKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPIT 450 (527)
T ss_pred CCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCC
Confidence 1145566555543222 2 457778884
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
|+.+-..+..... ..+.. .-.|.+++.++. ||.++.+|.+|||.|..++-..
T Consensus 451 Gk~~W~~~~~~p~-----~~~~l-~t~g~lvf~g~~-----------~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 451 GKIVWEHKEDFPL-----WGGVL-ATAGDLVFYGTL-----------EGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CceeeEecCCCCC-----CCcce-EECCcEEEEECC-----------CCeEEEEECCCCCEeEEEeCCC
Confidence 8887766533222 12222 224557777765 7999999999999999886543
No 310
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.91 E-value=0.019 Score=59.98 Aligned_cols=278 Identities=12% Similarity=0.167 Sum_probs=146.9
Q ss_pred CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceee---ecc
Q 011452 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE---SES 191 (485)
Q Consensus 115 gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~---~~~ 191 (485)
+.+.+.|-++|+.|-.+..+.. -.+.+||||+.+.+++.+-+-....=.---+.+||..+=++..-..+=. ...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 3688899999998888766443 4477899999999987654332111122245567753322210000000 001
Q ss_pred ccCceEEEEeCCCCeEEEEe--eCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecC-CC
Q 011452 192 LKWPGFVEFDDVNGKVLTYS--AQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-DG 267 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~--s~D~tiKlWdl~~g~~l~tl~~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~-tG 267 (485)
+.+....+++ .||+.+.-. +--..|-|=|++..+.+..+..-..+-|==+ +++..+.+ . |+++---.+. .|
T Consensus 94 ~~~~~~~~ls-~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC-~---DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 94 VPYKNMFALS-ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLC-G---DGSLLTVTLDADG 168 (342)
T ss_dssp S--GGGEEE--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEE-T---TSCEEEEEETSTS
T ss_pred cccccceEEc-cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEe-c---CCceEEEEECCCC
Confidence 2334456787 688876543 4456788889998888877753333333223 34333322 2 2344333333 67
Q ss_pred eEEEEeecCCcceeEEEE-E---ecCCCEEEEEeCCCcEEEEECCCCee-----EEecc---cCCCc----eEEEEEcCC
Q 011452 268 TVLKSFNHLLHRNKKVDF-I---EQFNEKLLVKQENENLQILDVRNFEL-----TEVSR---TEFMT----PSAFIFLYE 331 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f-~---~~~~~~lls~s~D~tIkIWDv~tg~~-----~~~l~---gh~~~----v~avaFspd 331 (485)
++..+-..--+....-.| . ...+++++--+.+|.|+--|+..... ...+. ...+| -..+++.+.
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 765332210011111111 1 12345666677778777777765431 11110 00011 112666654
Q ss_pred C-cEEEEE------e--CCcEEEE--eCC-CcEEEEee-cCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCC
Q 011452 332 N-QLFLTF------R--NRTVAVW--NFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 332 g-~llaS~------s--D~TIklW--d~~-G~ll~tl~-gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~D 397 (485)
. ++++-- + |.-=.|| |+. ++.+..++ .|. +.+|++|.|.+ +|...+. .+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vsqd~~P~L~~~~~----------~~ 311 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVSQDDKPLLYALSA----------GD 311 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEESSSS-EEEEEET----------TT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-------cceEEEccCCCcEEEEEcC----------CC
Confidence 4 444421 1 3333455 664 99999887 443 78999999998 5545443 26
Q ss_pred CeEEEEeCCCCeEEEEecCC
Q 011452 398 GSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~gH 417 (485)
+++.++|..||+.+.++.+-
T Consensus 312 ~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 312 GTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp TEEEEEETTT--EEEEE---
T ss_pred CeEEEEeCcCCcEEeehhcc
Confidence 99999999999999999763
No 311
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.85 E-value=5.4e-05 Score=48.70 Aligned_cols=27 Identities=15% Similarity=0.513 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 458 DITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|+++.|+|+++.+++|+.|+.|++|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 899999999999999999999999996
No 312
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00072 Score=72.56 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=93.6
Q ss_pred CCcEEEEEEcCCceEEEEEcCCCCe--eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEE--EC
Q 011452 233 DKNVQEIKISPGIMLLIFTKASGHV--PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DV 307 (485)
Q Consensus 233 ~~~V~~VafSpg~~ll~sss~~~D~--tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIW--Dv 307 (485)
...+..-+|+|++..+++.+-...+ .+.++|+.+|+.-+.++. .+....-+|+ ||+.+|+.+. .|+...|| |+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fs-pDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFS-PDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCC-CCCCEEEEEECCCCCccEEEEcC
Confidence 3567888999855554443322223 589999999987666551 2445567786 7899998874 77776666 88
Q ss_pred CCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 308 ~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
.+++..+ +..-...-..=.|+|||+.++=.+ .| .|-+.|.+|.-++.++-+... -..-.+||||++|+..
T Consensus 270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~-----~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG-----NSNPVWSPDGDKIVFE 343 (425)
T ss_pred CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC-----CcCccCCCCCCEEEEE
Confidence 8877555 322221112345899999998776 44 444555667765555544332 1245679999999998
Q ss_pred ec
Q 011452 384 CK 385 (485)
Q Consensus 384 s~ 385 (485)
+.
T Consensus 344 ~~ 345 (425)
T COG0823 344 SS 345 (425)
T ss_pred ec
Confidence 74
No 313
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.78 E-value=0.0028 Score=70.59 Aligned_cols=206 Identities=13% Similarity=0.145 Sum_probs=122.4
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC--------CceEEEEEcCCCCeeEEEEe
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP--------GIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp--------g~~ll~sss~~~D~tIklWd 263 (485)
+.+.-++|+ ++|+++.+.+.+ .+.|..+..+. ...=+.++|++ +++.+.. .+++|.+.|
T Consensus 235 gnpd~v~~s-pdGk~afvTsyN-------sE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V----~gn~V~VID 302 (635)
T PRK02888 235 GNLDNVDTD-YDGKYAFSTCYN-------SEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI----GGSKVPVVD 302 (635)
T ss_pred CCcccceEC-CCCCEEEEeccC-------cccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE----CCCEEEEEE
Confidence 355678997 699988777642 22333333332 11124455553 3333332 136899999
Q ss_pred cCC----C-eEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCee------------EEecccCCCceEE
Q 011452 264 IED----G-TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFEL------------TEVSRTEFMTPSA 325 (485)
Q Consensus 264 i~t----G-~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~------------~~~l~gh~~~v~a 325 (485)
..+ | +.+..+.- ...-..|+++ ||+.++++++ .+.+|-+.|+++.+. ..... =...+.-
T Consensus 303 ~~t~~~~~~~v~~yIPV-GKsPHGV~vS-PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-vGlGPLH 379 (635)
T PRK02888 303 GRKAANAGSALTRYVPV-PKNPHGVNTS-PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-LGLGPLH 379 (635)
T ss_pred CCccccCCcceEEEEEC-CCCccceEEC-CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-cCCCcce
Confidence 988 4 56666652 1344588886 8899998875 899999999998552 11111 1235666
Q ss_pred EEEcCCCcEEEEEe-CCcEEEEeCCC-----------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCC---
Q 011452 326 FIFLYENQLFLTFR-NRTVAVWNFRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD--- 390 (485)
Q Consensus 326 vaFspdg~llaS~s-D~TIklWd~~G-----------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d--- 390 (485)
.+|.++|....|-- |..|-.||+.. ..+..+.-|...-......+=.-.|||++|+|.++=.+|=
T Consensus 380 TaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~ 459 (635)
T PRK02888 380 TAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLP 459 (635)
T ss_pred EEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccC
Confidence 78999999888888 99999999742 3455555444320000011112379999999998632210
Q ss_pred --CCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 391 --PLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 391 --~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
++-.-+ -.|-|| +|..+.-+..|
T Consensus 460 vgpl~pen---~qlidI-sgdkM~lv~d~ 484 (635)
T PRK02888 460 VGPLHPEN---DQLIDI-SGDKMKLVHDG 484 (635)
T ss_pred CCCCCCCc---ceeEEc-cCCeeEEEecC
Confidence 111112 345565 47666666444
No 314
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.76 E-value=0.00046 Score=69.51 Aligned_cols=142 Identities=13% Similarity=0.030 Sum_probs=100.6
Q ss_pred EEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE-EeecCCcceeEEEE
Q 011452 209 TYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK-SFNHLLHRNKKVDF 285 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~-tl~~~~~~~~~V~f 285 (485)
--++.|.|+|+.++..+..-+.+|-. .+.+.++||++.++++..++.+....-.|-+.-..++ +.+.-.++-+.+.|
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred eeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 34678999999999877665556533 4899999999999988877754444444444444555 34444566778898
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCee-----EEecccCCCceEEEEEcCCCcE---EEEEeCCcEEEEeCC-Cc
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFEL-----TEVSRTEFMTPSAFIFLYENQL---FLTFRNRTVAVWNFR-GE 351 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~-----~~~l~gh~~~v~avaFspdg~l---laS~sD~TIklWd~~-G~ 351 (485)
+ ..+..++++..|+++-|||+++-.. -.+-..|.+.+..+.|+|.|-+ |.|=.=+-+.|-|++ +.
T Consensus 212 s-~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 212 S-ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred c-cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 7 4578899999999999999997432 2223468999999999987754 222225567788875 54
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.75 E-value=8.8e-05 Score=76.58 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=100.4
Q ss_pred EEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC------CcEEEEeecCCCCCCCC
Q 011452 294 LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR------GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 294 ls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~------G~ll~tl~gH~~~~~~~ 366 (485)
++.+-+..|-|-|++||-..... -...|.|.-|.--+.++.-|. +|.|-..|++ |.+.+.|- |...
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ss---- 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSS---- 300 (425)
T ss_pred ecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcc----
Confidence 44467778888899987543332 344677777888788888888 9999999984 34565554 4433
Q ss_pred CeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE---EEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 367 NTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNILTGKC---LAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 367 ~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~---l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
|.++.+-. ++++|++.++ +|+|+|||+.--|| +.+.+||-+.+.
T Consensus 301 -vtslq~Lq~s~q~LmaS~M-----------~gkikLyD~R~~K~~~~V~qYeGHvN~~a-------------------- 348 (425)
T KOG2695|consen 301 -VTSLQILQFSQQKLMASDM-----------TGKIKLYDLRATKCKKSVMQYEGHVNLSA-------------------- 348 (425)
T ss_pred -hhhhhhhccccceEeeccC-----------cCceeEeeehhhhcccceeeeeccccccc--------------------
Confidence 67777766 7788887776 79999999987778 999999986322
Q ss_pred ccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+. +-..|+--.|++++.|-.-|+|.+
T Consensus 349 ---------------~l~-~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 349 ---------------YLP-AHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred ---------------ccc-cccccccceEEEccCeeEEEEEec
Confidence 111 334566667888999999999974
No 316
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.055 Score=57.05 Aligned_cols=231 Identities=17% Similarity=0.173 Sum_probs=147.6
Q ss_pred CceEEEEeCCCC-eEEEEeeCCCcEEEeecCCCeEEEEEc-C-CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 194 WPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 194 ~~~~V~Fs~pnG-~~Las~s~D~tiKlWdl~~g~~l~tl~-~-~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
++..|... ++| +..+.-+...++.+-+.....-..+.. + ..-+.++++| +.+..+... .+..|.+.|.++-++
T Consensus 32 ~~~~v~~~-~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~--~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVN-PDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTG--DSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEc-CccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecC--CCCeEEEEcCcccce
Confidence 55577776 566 444443333355555543111111111 1 2345788886 444544432 247999999888888
Q ss_pred EEEee-cCCcceeEEEEEecCCCEEEEEe---CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcE
Q 011452 270 LKSFN-HLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTV 343 (485)
Q Consensus 270 L~tl~-~~~~~~~~V~f~~~~~~~lls~s---~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TI 343 (485)
+.+.. +. .-..++|. ++++++.++. .++++.+.|-.+++.+++...-. .+..++|.|+|+.+.... +++|
T Consensus 109 ~~~~~vG~--~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 109 LGSIPVGL--GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TPTGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred eeEeeecc--CCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-CcceEEECCCCCeEEEEecCCCeE
Confidence 87776 32 33477775 6787888763 37999999999998887743322 448899999999655554 9999
Q ss_pred EEEeCCCcEEEE------eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 344 AVWNFRGELVTS------FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 344 klWd~~G~ll~t------l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
.+-|.++.-+.. ..-+.. =..++++|||+++..... .+.+++|-.-|..+++...+...-
T Consensus 185 ~vi~~~~~~v~~~~~~~~~~~~~~------P~~i~v~~~g~~~yV~~~--------~~~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 185 SVIDTSGNSVVRGSVGSLVGVGTG------PAGIAVDPDGNRVYVAND--------GSGSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred EEEeCCCcceeccccccccccCCC------CceEEECCCCCEEEEEec--------cCCCceEEEEeCCCceEEEecccc
Confidence 999987554442 222221 257999999998877764 122478888898888877662221
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC-CcEEE
Q 011452 418 NGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH-GLVHV 482 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D-gtVkl 482 (485)
.. + .-..++++|+|+.++..... ++|.+
T Consensus 251 ~~------------------------------------~-~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 251 GS------------------------------------G-APRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cc------------------------------------C-CCCceeECCCCCEEEEEecCCCeEEE
Confidence 10 0 23458999999999988543 45443
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.62 E-value=0.041 Score=57.52 Aligned_cols=266 Identities=12% Similarity=0.163 Sum_probs=154.8
Q ss_pred CcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee----------CCCcEEEeecCCCeEEEEE
Q 011452 162 FSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSI 231 (485)
Q Consensus 162 ~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s----------~D~tiKlWdl~~g~~l~tl 231 (485)
|-++. ..+.+-|-..|++ ...-..+....+..+ |||+.+..++ ..-.|-+||.+|-+....+
T Consensus 12 ~~~~~-~rv~viD~d~~k~------lGmi~~g~~~~~~~s-pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI 83 (342)
T PF06433_consen 12 FFHMT-SRVYVIDADSGKL------LGMIDTGFLGNVALS-PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI 83 (342)
T ss_dssp GGGSS-EEEEEEETTTTEE------EEEEEEESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE
T ss_pred ccccc-ceEEEEECCCCcE------EEEeecccCCceeEC-CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE
Confidence 45565 3577777666665 232222333456777 7999988764 2457999999998876644
Q ss_pred --cCC-c------EEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCc
Q 011452 232 --SDK-N------VQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENEN 301 (485)
Q Consensus 232 --~~~-~------V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~t 301 (485)
+.. . .+..++|+ |..+++..- .--..|-|-|++.++.+..+.- ...+-|. |..+..+.+-+.||+
T Consensus 84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~kvv~ei~~--PGC~~iy--P~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNF-TPATSVTVVDLAAKKVVGEIDT--PGCWLIY--PSGNRGFSMLCGDGS 158 (342)
T ss_dssp EETTS-B--BS--GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEEG--TSEEEEE--EEETTEEEEEETTSC
T ss_pred ecCCcchheecccccceEEccCCcEEEEEcc-CCCCeEEEEECCCCceeeeecC--CCEEEEE--ecCCCceEEEecCCc
Confidence 432 2 23478896 445555433 3347899999999999998862 2333332 222456667789999
Q ss_pred EEEEECC-CCeeEEecc----cCCCce-EEEEEcCC-CcEEEEEeCCcEEEEeCCCcEE---EEee------cCCCCCCC
Q 011452 302 LQILDVR-NFELTEVSR----TEFMTP-SAFIFLYE-NQLFLTFRNRTVAVWNFRGELV---TSFE------DHLLWHPD 365 (485)
Q Consensus 302 IkIWDv~-tg~~~~~l~----gh~~~v-~avaFspd-g~llaS~sD~TIklWd~~G~ll---~tl~------gH~~~~~~ 365 (485)
+.-..+. .|+..+... ...+.+ ..-+++.. ++++-.+-+|.|.-=|+.|+-. ..++ .-..|-|.
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 9988888 566543221 111111 11122222 3333332266666666654422 2221 12356555
Q ss_pred CCeeEEEECCCCCEEEEEecCCCCCCCCcC-CC--CeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 366 CNTNNIYITSDQDLIISYCKADSDDPLAEG-NA--GSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 366 ~~v~svafSpDG~~LaS~s~d~~~d~~~~~-~D--gtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
+. .-+++.+..+.|..-=....+ ++ .| ..|-++|+.|+|.++.|.--.
T Consensus 239 G~-Q~~A~~~~~~rlyvLMh~g~~----gsHKdpgteVWv~D~~t~krv~Ri~l~~------------------------ 289 (342)
T PF06433_consen 239 GW-QLIAYHAASGRLYVLMHQGGE----GSHKDPGTEVWVYDLKTHKRVARIPLEH------------------------ 289 (342)
T ss_dssp SS-S-EEEETTTTEEEEEEEE--T----T-TTS-EEEEEEEETTTTEEEEEEEEEE------------------------
T ss_pred ce-eeeeeccccCeEEEEecCCCC----CCccCCceEEEEEECCCCeEEEEEeCCC------------------------
Confidence 53 568888876666543221000 00 11 247888999999999997421
Q ss_pred ccccccccchhcccCCeEEEEEcCCCC-EEEEec-CCCcEEEcc
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRN-EIYTGN-RHGLVHVWS 484 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs-~DgtVklWd 484 (485)
.+.+|+.+.|.+ .|+..+ .++++.++|
T Consensus 290 ---------------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 290 ---------------PIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp ---------------EESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ---------------ccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 677899999988 676655 589999987
No 318
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.61 E-value=0.013 Score=63.42 Aligned_cols=214 Identities=14% Similarity=0.155 Sum_probs=117.4
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl 273 (485)
.|..+.++ |+|+.++-++ |+.|-|......+..... .-.+.+|++.+.+|+-.+ ..+|+|..--+.+..+++
T Consensus 34 ~p~~ls~n-pngr~v~V~g-~geY~iyt~~~~r~k~~G---~g~~~vw~~~n~yAv~~~---~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHN-PNGRFVLVCG-DGEYEIYTALAWRNKAFG---SGLSFVWSSRNRYAVLES---SSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE--TTSSEEEEEE-TTEEEEEETTTTEEEEEE---E-SEEEE-TSSEEEEE-T---TS-EEEEETTEE-TT---
T ss_pred CCeeEEEC-CCCCEEEEEc-CCEEEEEEccCCcccccC---ceeEEEEecCccEEEEEC---CCeEEEEEcCccccceEE
Confidence 46789997 7999988855 888888874443332222 234578888888887743 368888532222222344
Q ss_pred ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCCCc--
Q 011452 274 NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE-- 351 (485)
Q Consensus 274 ~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~G~-- 351 (485)
+-. ..+..+- ++.||.-..++.|.+||+++++.+....-. .|..|.|+++|+++|=.++.+|-|.+.+-+
T Consensus 106 ~~~-~~~~~If-----~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~ 177 (443)
T PF04053_consen 106 KLP-FSVEKIF-----GGNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAV 177 (443)
T ss_dssp --S-S-EEEEE------SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHH
T ss_pred cCC-cccceEE-----cCcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhc
Confidence 310 1223332 255555444559999999999999888522 379999999999999999889999998744
Q ss_pred ----------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011452 352 ----------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLP 421 (485)
Q Consensus 352 ----------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~ 421 (485)
.+..+..-... |.+.+|--| ++-++. .+-||- +..|+. .+|. |-+
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~-----IkSg~W~~d---~fiYtT-----------~~~lkY--l~~Ge~-~~i~-~ld-- 232 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISER-----IKSGCWVED---CFIYTT-----------SNHLKY--LVNGET-GIIA-HLD-- 232 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S-------SEEEEETT---EEEEE------------TTEEEE--EETTEE-EEEE-E-S--
T ss_pred ccccccCchhceEEEEEecce-----eEEEEEEcC---EEEEEc-----------CCeEEE--EEcCCc-ceEE-EcC--
Confidence 44444331112 777777655 333443 245665 333443 2221 211
Q ss_pred CCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 422 AENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
..++=+.+.|+.+.|+...+|+.|...
T Consensus 233 -----------------------------------~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 233 -----------------------------------KPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -----------------------------------S--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred -----------------------------------CceEEEEEEccCCEEEEEECCCCEEEE
Confidence 267778999988999999999988765
No 319
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0004 Score=73.87 Aligned_cols=217 Identities=15% Similarity=0.147 Sum_probs=131.8
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC-CcCcccceeeeccccCceEEEEeCCCCeEEEEeeC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG-KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G-~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
|.+.|.-|+-+. -+.+++||.|| ..+.|-- .+ .-..-.+-|. .++.-+.+++-+ .+|-++.|.+.
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDG----------h~KFWkK-s~isGvEfVKhFr-aHL~~I~sl~~S-~dg~L~~Sv~d 73 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDG----------HKKFWKK-SRISGVEFVKHFR-AHLGVILSLAVS-YDGWLFRSVED 73 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecch----------hhhhcCC-CCccceeehhhhH-HHHHHHHhhhcc-ccceeEeeccC
Confidence 666777777766 56899999765 4556652 22 1100011122 234434455555 68999999777
Q ss_pred -CCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCE
Q 011452 214 -DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK 292 (485)
Q Consensus 214 -D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ 292 (485)
|..+|++|+.+..++.-+ |+-++..-.+..+-+| ..+. .
T Consensus 74 ~Dhs~KvfDvEn~Dminmi----------------------------KL~~lPg~a~wv~skG--d~~s----------~ 113 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMI----------------------------KLVDLPGFAEWVTSKG--DKIS----------L 113 (558)
T ss_pred cccceeEEEeeccchhhhc----------------------------ccccCCCceEEecCCC--Ceee----------e
Confidence 999999999876653222 1111111011111110 0011 2
Q ss_pred EEEEe-CCCcEEEEECCCCee--EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCc-------EEEEeecCCC
Q 011452 293 LLVKQ-ENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE-------LVTSFEDHLL 361 (485)
Q Consensus 293 lls~s-~D~tIkIWDv~tg~~--~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~-------ll~tl~gH~~ 361 (485)
++++. +++-|-+.|-....| ...-.-|+.+|...-.+|-+..++|.. .|.|+-|..+|. +...+. |..
T Consensus 114 IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K-~eT 192 (558)
T KOG0882|consen 114 IAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK-HET 192 (558)
T ss_pred EEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccc-ccc
Confidence 22222 566777777664443 222234888999999999999999988 999999998762 111111 110
Q ss_pred C---CC--CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 362 W---HP--DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 362 ~---~~--~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
. -+ -..-.++.|+|+|..|..-+. |.+|++.++.||+.++.|..-
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~qistl~~-----------DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGAQISTLNP-----------DRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred hhhcccccccCccceEEccccCcccccCc-----------ccEEEEEEeccchhhhhhhcc
Confidence 0 00 012468999999999998764 799999999999999988653
No 320
>PRK10115 protease 2; Provisional
Probab=97.59 E-value=0.17 Score=57.55 Aligned_cols=243 Identities=11% Similarity=0.133 Sum_probs=136.3
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc-eEEEEeCCCCeEEEEeeCC-
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP-GFVEFDDVNGKVLTYSAQD- 214 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~-~~V~Fs~pnG~~Las~s~D- 214 (485)
-.+..+.+||||+.||.+...++++ -.++.+-++.+|+.. -. .+.++ ..++|. +||+.|.+...|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E-----~~~l~v~d~~tg~~l-----~~--~i~~~~~~~~w~-~D~~~~~y~~~~~ 193 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRR-----QYGIRFRNLETGNWY-----PE--LLDNVEPSFVWA-NDSWTFYYVRKHP 193 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcE-----EEEEEEEECCCCCCC-----Cc--cccCcceEEEEe-eCCCEEEEEEecC
Confidence 3577788999999887754332222 256667777788731 11 11122 368997 688888887653
Q ss_pred -----CcEEEeecCCC--e--EEEEEcCCcEE-EEEEc-CCceEEEEEcCCCCeeEEEEec--CCCeEEEEeecCCccee
Q 011452 215 -----SIYKVFDLKNY--T--MLYSISDKNVQ-EIKIS-PGIMLLIFTKASGHVPLKILSI--EDGTVLKSFNHLLHRNK 281 (485)
Q Consensus 215 -----~tiKlWdl~~g--~--~l~tl~~~~V~-~VafS-pg~~ll~sss~~~D~tIklWdi--~tG~~L~tl~~~~~~~~ 281 (485)
..|.++++.++ + +++.-.+.... .+..+ ++..+++.+....+..+.+++. .+|+....+..-.+...
T Consensus 194 ~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (686)
T PRK10115 194 VTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY 273 (686)
T ss_pred CCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE
Confidence 35677788887 2 45554333333 44455 6666666666666678999984 35553222221111111
Q ss_pred EEEEEecCCCEEEEEe--CCCcEEEE--ECC-CCeeEEecccCC-CceEEEEEcCCCcEEEEEe-CCcEEEEeC--CCcE
Q 011452 282 KVDFIEQFNEKLLVKQ--ENENLQIL--DVR-NFELTEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGEL 352 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s--~D~tIkIW--Dv~-tg~~~~~l~gh~-~~v~avaFspdg~llaS~s-D~TIklWd~--~G~l 352 (485)
.+. ..++.+.... ...+-+|. ++. .++...++.... ..+..+.+. .+.++++.. ++.-+|+-+ .+..
T Consensus 274 --~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~ 349 (686)
T PRK10115 274 --SLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE 349 (686)
T ss_pred --EEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc
Confidence 222 2245555543 22445555 454 333333333323 367888777 556777777 776666654 4555
Q ss_pred EEEee-cCCCCCCCCCeeEEEEC--CC-CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 353 VTSFE-DHLLWHPDCNTNNIYIT--SD-QDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 353 l~tl~-gH~~~~~~~~v~svafS--pD-G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
+..+. +.... +..+.++ ++ +.++++.+. ...-++|-.+|+.+++
T Consensus 350 ~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 350 VIGIAFDDPAY-----VTWIAYNPEPETSRLRYGYSS--------MTTPDTLFELDMDTGE 397 (686)
T ss_pred eEEecCCCCce-----EeeecccCCCCCceEEEEEec--------CCCCCEEEEEECCCCc
Confidence 55554 22111 3334455 44 456666664 2235789999998875
No 321
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.57 E-value=0.041 Score=58.39 Aligned_cols=264 Identities=14% Similarity=0.167 Sum_probs=121.8
Q ss_pred cCEEEEEeCCCeEEee--ecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc
Q 011452 105 RDIVFALAQSGVCAAF--CRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (485)
Q Consensus 105 ~~~ias~s~dgtiklW--~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~ 182 (485)
..+|+++..||.-.|| |+++|+..+ |.-+........+.+|+++.|+-+. ++ +++.--++.+++.
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~----~~------~~l~~vdL~T~e~-- 114 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVK----NG------RSLRRVDLDTLEE-- 114 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEE----TT------TEEEEEETTT--E--
T ss_pred CEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEE----CC------CeEEEEECCcCcE--
Confidence 4778888878776665 577666554 6554433334678888888876543 11 2333334455443
Q ss_pred ccceeeeccccCceEEEEe-CCCCeEEEEee----------------------CCCcEEEeecCCCeEEEEEc-CCcEEE
Q 011452 183 GFALFESESLKWPGFVEFD-DVNGKVLTYSA----------------------QDSIYKVFDLKNYTMLYSIS-DKNVQE 238 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs-~pnG~~Las~s----------------------~D~tiKlWdl~~g~~l~tl~-~~~V~~ 238 (485)
..+++- .-.|.+...+. +.|+..++-.- -.+.|.-=|+++|+.--.+. ..++.-
T Consensus 115 -~~vy~~-p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 115 -RVVYEV-PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp -EEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred -EEEEEC-CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 234443 22344433442 24566655431 13344445788877544444 468889
Q ss_pred EEEcC-CceEEEEEcC-CCCe-eEEEEecC-CCeEEEEeecCCcc-eeEEEEEecCCCEEEE-E----eCCCcEEEEECC
Q 011452 239 IKISP-GIMLLIFTKA-SGHV-PLKILSIE-DGTVLKSFNHLLHR-NKKVDFIEQFNEKLLV-K----QENENLQILDVR 308 (485)
Q Consensus 239 VafSp-g~~ll~sss~-~~D~-tIklWdi~-tG~~L~tl~~~~~~-~~~V~f~~~~~~~lls-~----s~D~tIkIWDv~ 308 (485)
+-||| +-.++.++-. ..|. +-|||=+. +|.-.+.+..+... +-.=.|-.+||.+|.- + +.+..|.=.|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99997 6566666443 3332 34778443 56666666433221 1122233477877765 2 356788888999
Q ss_pred CCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC----------------cEEEEeCCCcEEEEeecCCC-CC-----CC
Q 011452 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR----------------TVAVWNFRGELVTSFEDHLL-WH-----PD 365 (485)
Q Consensus 309 tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~----------------TIklWd~~G~ll~tl~gH~~-~~-----~~ 365 (485)
|++...... ..+.+=+.-++||+||+--+ |. -|.|++++.+-...|.-|.. |. ..
T Consensus 273 t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 273 TGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ 350 (386)
T ss_dssp T--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSS
T ss_pred CCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc
Confidence 987654432 22334455689999998655 53 45567776333333443421 10 00
Q ss_pred CCeeEEEECCCCCEEEEEec
Q 011452 366 CNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 366 ~~v~svafSpDG~~LaS~s~ 385 (485)
..-..+.|||||++|+=.|.
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp TT----EE-TTSSEEEEEE-
T ss_pred cCCCCCccCCCCCEEEEECC
Confidence 01245889999999998875
No 322
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.48 E-value=0.00031 Score=44.97 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=34.2
Q ss_pred CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 310 FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 310 g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
++++..+..|...|.++.|.|+++++++++ |++|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 566777788999999999999999999999 99999996
No 323
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0044 Score=67.58 Aligned_cols=179 Identities=15% Similarity=0.203 Sum_probs=120.2
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCC---------CeeEEEEecCCC
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASG---------HVPLKILSIEDG 267 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~---------D~tIklWdi~tG 267 (485)
.|.|| |-|.+|+|=-+-| |-+|-=++...++.+..-.|+-|.|||.-.+|++-+... -..+.||||.||
T Consensus 215 yv~wS-P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWS-PKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEec-CCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 68998 7999999876544 679976666677777667899999999665555433311 157999999999
Q ss_pred eEEEEeec--CCcceeE-EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe---C-
Q 011452 268 TVLKSFNH--LLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR---N- 340 (485)
Q Consensus 268 ~~L~tl~~--~~~~~~~-V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s---D- 340 (485)
.+.++|.- ..-.++. +.|+ . +++.++-=.-.+|-|++..+-.++.--.-.-..|..|.|+|.+++||-=. +
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS-~-DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWS-H-DDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred chhcceeccCCCccccceEEec-c-CCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 99999974 1222332 3343 3 45555543337899998877554432212234677889999999998543 2
Q ss_pred --CcEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 341 --RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 341 --~TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
-++-|-.+ .++.+++-.=|... +| .+.+-.+|++|+-.-
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVs--Dc---kLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVS--DC---KLHWQKSGDYLCVKV 412 (698)
T ss_pred CcceEEEEecCccceeeeccceeee--cc---EEEeccCCcEEEEEE
Confidence 25666676 46666665544422 33 378888999998764
No 324
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.00043 Score=76.90 Aligned_cols=150 Identities=12% Similarity=0.151 Sum_probs=104.0
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCe---------------eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEE
Q 011452 282 KVDFIEQFNEKLLVKQENENLQILDVRNFE---------------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 345 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---------------~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIkl 345 (485)
.++|. -..++++.++.||-+|+..+.+.. .-+++.||...|.-+.|..+.|.|-|+. +|-|-+
T Consensus 19 c~~WN-ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 19 CAEWN-KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEc-ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 44553 335789999999999999876531 2467899999999999999999999888 999999
Q ss_pred EeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011452 346 WNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424 (485)
Q Consensus 346 Wd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~ 424 (485)
|-+ .|.-...+...... .+|.++.++.||+.|+..-.|- .-+.++-||. |||. |. |+|.
T Consensus 98 WmlykgsW~EEMiNnRnK---SvV~SmsWn~dG~kIcIvYeDG--avIVGsvdGN-RIwg----Ke---Lkg~------- 157 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNK---SVVVSMSWNLDGTKICIVYEDG--AVIVGSVDGN-RIWG----KE---LKGQ------- 157 (1189)
T ss_pred EeeecccHHHHHhhCcCc---cEEEEEEEcCCCcEEEEEEccC--CEEEEeeccc-eecc----hh---cchh-------
Confidence 998 46533333322221 3489999999999998887610 0111122222 5563 22 2332
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
-...|.+|||.+.+.-+=..|.++|.||
T Consensus 158 ---------------------------------~l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 158 ---------------------------------LLAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred ---------------------------------eccceeecccHHHHHhhhcCCcEEEecc
Confidence 1224788999888888888888888875
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.35 E-value=0.22 Score=50.63 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=68.7
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
..+++.+|+++.++.-|.++|+.+=.-. -...|.+-+.= =|+.++.+- .. ..+.+-+..+|...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-vgdfVV~GC----y~------g~lYfl~~~tGs~~--- 86 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-VGDFVVLGC----YS------GGLYFLCVKTGSQI--- 86 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-ECCEEEEEE----cc------CcEEEEEecchhhe---
Confidence 6889999999999999999999764211 11234433332 244444322 11 22333344777441
Q ss_pred ceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc
Q 011452 185 ALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 185 ~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~ 232 (485)
--|.. +..+-...++ ++|.++-.++.|++...-|.+++.++|..+
T Consensus 87 w~f~~~~~vk~~a~~d---~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 87 WNFVILETVKVRAQCD---FDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred eeeeehhhhccceEEc---CCCceEEEecCCCcEEEecccccceEEecc
Confidence 12333 2333222344 468899999999999999999999999976
No 326
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.33 E-value=0.19 Score=49.40 Aligned_cols=195 Identities=17% Similarity=0.267 Sum_probs=121.5
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE---------------EEc-CCcEEEEEEc---CCceEEEEEcCCC
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY---------------SIS-DKNVQEIKIS---PGIMLLIFTKASG 255 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~---------------tl~-~~~V~~VafS---pg~~ll~sss~~~ 255 (485)
+..++.-+.-+.+|+- + |+++.++++.+-.... .+. ...|..++.. .+...++.+..
T Consensus 38 I~ql~vl~~~~~llvL-s-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-- 113 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVL-S-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-- 113 (275)
T ss_pred EEEEEEecccCEEEEE-c-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC--
Confidence 5566665333444443 3 6999999988655433 222 2466666622 24444444333
Q ss_pred CeeEEEEecCCC-----eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC----------
Q 011452 256 HVPLKILSIEDG-----TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF---------- 320 (485)
Q Consensus 256 D~tIklWdi~tG-----~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~---------- 320 (485)
++|.|+..... +.++.+.- ......++|. +..++++.. ....+.|+.++.....+....
T Consensus 114 -k~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~---~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~ 187 (275)
T PF00780_consen 114 -KKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL---GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNS 187 (275)
T ss_pred -CEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe---CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhccc
Confidence 48888877553 46666653 3567788886 567777764 448999999888766653221
Q ss_pred -CceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 321 -MTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 321 -~~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
..+..+.-.+++.+|+.. |..--.=|.+|+..+ .....|... ..++++.. .||+..+ ++.
T Consensus 188 ~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r--~~~i~W~~~--p~~~~~~~--pyli~~~------------~~~ 248 (275)
T PF00780_consen 188 SSKPLGIFQLSDNEFLLCY-DNIGVFVNKNGEPSR--KSTIQWSSA--PQSVAYSS--PYLIAFS------------SNS 248 (275)
T ss_pred CCCceEEEEeCCceEEEEe-cceEEEEcCCCCcCc--ccEEEcCCc--hhEEEEEC--CEEEEEC------------CCE
Confidence 123333334556777654 444446677888666 444456332 45666643 4777765 477
Q ss_pred EEEEeCCCCeEEEEecCCC
Q 011452 400 INISNILTGKCLAKIRASN 418 (485)
Q Consensus 400 IklWdl~TGk~l~tl~gH~ 418 (485)
|.||++.+|++++++..+.
T Consensus 249 iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 249 IEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEEECcCCcEEEEEECCC
Confidence 9999999999999998764
No 327
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.018 Score=64.58 Aligned_cols=347 Identities=12% Similarity=0.076 Sum_probs=197.2
Q ss_pred cCEEEEEeCCCeEEeeecccCcE---------------EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 105 RDIVFALAQSGVCAAFCRETNQR---------------ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~---------------l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
..+||.++.||..|+-.+.|... =.||.| |+..|+-|.||.++|.|-| | ..+ +-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTt-S---Dt~------Gl 94 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTT-S---DTS------GL 94 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccc-c---CCC------ce
Confidence 78999999999999998875221 125666 8899999999999999865 2 123 57
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE-EEEEcCCcEEEEEEcCCceEE
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISDKNVQEIKISPGIMLL 248 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~-l~tl~~~~V~~VafSpg~~ll 248 (485)
|-+|-+-.|..-.- ........-+.+.++. .||+.+.-.=.||.|-|=.++.... -..+++....-|.+|||..++
T Consensus 95 IiVWmlykgsW~EE--MiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEE--MINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred EEEEeeecccHHHH--HhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 88998877765110 0000000112356665 5777777666677765554432211 022333334457788766655
Q ss_pred EEEcCCCCeeEEEEecCCC-------eEEEEeec----CCccee-------EEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011452 249 IFTKASGHVPLKILSIEDG-------TVLKSFNH----LLHRNK-------KVDFIEQFNEKLLVKQENENLQILDVRNF 310 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG-------~~L~tl~~----~~~~~~-------~V~f~~~~~~~lls~s~D~tIkIWDv~tg 310 (485)
...-+. +.+.|.|-+.. .|+-+.+| ..+.+. .+..++|+--.|++.-++|.++|---.+.
T Consensus 172 Lf~~an--ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 172 LFKKAN--GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HhhhcC--CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 443333 56666664321 12111111 011122 23334566678888989999998754443
Q ss_pred -eeEEecccCCCceEEEEEcCCCcEEEEEe-CC---------cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCE
Q 011452 311 -ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR---------TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (485)
Q Consensus 311 -~~~~~l~gh~~~v~avaFspdg~llaS~s-D~---------TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~ 379 (485)
++.-+-.| +.+...-|+|+|..||.++ |. .|..+..-|+.+.+|.-...- |.++.+-..|-.
T Consensus 250 ~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~-----It~lsWEg~gLr 322 (1189)
T KOG2041|consen 250 PEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSC-----ITGLSWEGTGLR 322 (1189)
T ss_pred CCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCce-----eeeeEEcCCceE
Confidence 33333333 6788888999999999887 42 455665558888888754322 777777777766
Q ss_pred EEEEecCCC---C---C--------------CCCcCCCCeEEEEeCCCCe-EEEEe---------cCCC--------CCC
Q 011452 380 IISYCKADS---D---D--------------PLAEGNAGSINISNILTGK-CLAKI---------RASN--------GLP 421 (485)
Q Consensus 380 LaS~s~d~~---~---d--------------~~~~~~DgtIklWdl~TGk-~l~tl---------~gH~--------~~~ 421 (485)
||-+-.+-. + + +..+.----|-.||..|.+ -+++. ..|- +++
T Consensus 323 iA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 323 IAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred EEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCC
Confidence 666542000 0 0 1111112347789887754 22222 2221 111
Q ss_pred C-C-cccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 422 A-E-NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 422 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
+ + ..-.+++-+.+.+||+--. ++.+..-+|.-.+.--+|..++-+|.+.. -+|
T Consensus 403 ~e~s~le~~~~~~~l~LCNSIGT--------~lD~kytdirP~Fv~vn~~~vviAS~e~~-~iW 457 (1189)
T KOG2041|consen 403 PEYSTLENRSRVYFLQLCNSIGT--------SLDYKYTDIRPKFVCVNGICVVIASEERY-FIW 457 (1189)
T ss_pred cchhhhhcccceEEEeeecccCC--------cCCCCcceeeeeEEEecceEEEEeccccE-EEE
Confidence 0 0 1112233346778876543 23333346666677777888888887764 366
No 328
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.19 E-value=0.2 Score=52.56 Aligned_cols=205 Identities=14% Similarity=0.124 Sum_probs=110.6
Q ss_pred EEEEeCCCCeEEEEe-----eCCCcEEEeecCCCeEEEE-EcCCcEEEEEEcCCceEEEEEcCCC---------CeeEEE
Q 011452 197 FVEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLYS-ISDKNVQEIKISPGIMLLIFTKASG---------HVPLKI 261 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~-----s~D~tiKlWdl~~g~~l~t-l~~~~V~~VafSpg~~ll~sss~~~---------D~tIkl 261 (485)
..++| |||++||.+ +...++++.|+++|+.+-. +....-..+.|++++..+.+..-+. ...|++
T Consensus 128 ~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 56787 899999976 2336799999999987643 3322222399998755544444333 456888
Q ss_pred EecCCCeE--EEEeecCCcce--eEEEEEecCCCEEEEEe---CC-CcEEEEECCCC----eeEEecccCCCceEEEEEc
Q 011452 262 LSIEDGTV--LKSFNHLLHRN--KKVDFIEQFNEKLLVKQ---EN-ENLQILDVRNF----ELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 262 Wdi~tG~~--L~tl~~~~~~~--~~V~f~~~~~~~lls~s---~D-~tIkIWDv~tg----~~~~~l~gh~~~v~avaFs 329 (485)
|.+.++.. .-.|....+.. ..+..+ .++..|++.+ .+ ..+.+-|+.++ ...+.+..+...+...+-.
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 88877643 23344332333 356654 6788877643 34 55888899875 2233333344455555544
Q ss_pred CCCcEEEEEe----CCcEEEEeCC-Cc---EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE
Q 011452 330 YENQLFLTFR----NRTVAVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN 401 (485)
Q Consensus 330 pdg~llaS~s----D~TIklWd~~-G~---ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk 401 (485)
.++.+++... ++.|---++. .. -...+-.|... ..+..+....+ .++++.-. + -...|+
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~---~~l~~~~~~~~-~Lvl~~~~----~-----~~~~l~ 352 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED---VSLEDVSLFKD-YLVLSYRE----N-----GSSRLR 352 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS---EEEEEEEEETT-EEEEEEEE----T-----TEEEEE
T ss_pred cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc---eeEEEEEEECC-EEEEEEEE----C-----CccEEE
Confidence 5666665543 3344444553 32 22244444321 12445544322 34444443 1 124689
Q ss_pred EEeCCCCeEEEEecC
Q 011452 402 ISNILTGKCLAKIRA 416 (485)
Q Consensus 402 lWdl~TGk~l~tl~g 416 (485)
++|+..++....+..
T Consensus 353 v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 353 VYDLDDGKESREIPL 367 (414)
T ss_dssp EEETT-TEEEEEEES
T ss_pred EEECCCCcEEeeecC
Confidence 999875666666554
No 329
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.16 E-value=0.22 Score=54.16 Aligned_cols=226 Identities=13% Similarity=0.123 Sum_probs=128.2
Q ss_pred cCEEEEEe---------CCCeEEeeecccCcEEEEeecCCc-------------------ccEE-EEEEeeCCCEEEEEE
Q 011452 105 RDIVFALA---------QSGVCAAFCRETNQRICFLNVTAD-------------------EVIR-SLFYNKNNDSLITVS 155 (485)
Q Consensus 105 ~~~ias~s---------~dgtiklW~~~tG~~l~tl~g~~~-------------------~~i~-sv~~spdg~~Las~S 155 (485)
+++++.++ .+|.+...|.+||+.+=.....+. ..|+ +.++.+.+.+++.++
T Consensus 156 ~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~ 235 (488)
T cd00216 156 KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGT 235 (488)
T ss_pred CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEEC
Confidence 56666665 368899999999998765543211 1122 456666677777765
Q ss_pred eecCCCC--------cccceeEEEEeEeccCCcCcccceeeecccc---Cc----eEEEEe---CCCCe---EEEEeeCC
Q 011452 156 VYASDNF--------SSLRCRSTRIEYIRRGKPDAGFALFESESLK---WP----GFVEFD---DVNGK---VLTYSAQD 214 (485)
Q Consensus 156 ~d~~~d~--------stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~---~~----~~V~Fs---~pnG~---~Las~s~D 214 (485)
.++.-+. ..+....+--.|+.+|+. +|+..... |. ....+. +.+|. ++..++.+
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-----~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~ 310 (488)
T cd00216 236 GNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-----KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN 310 (488)
T ss_pred CCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-----EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC
Confidence 4331110 011112444456677876 56542111 10 011111 12454 56667789
Q ss_pred CcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEc--------------CCCCeeEEEEecCCCeEEEEeecCCc--
Q 011452 215 SIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK--------------ASGHVPLKILSIEDGTVLKSFNHLLH-- 278 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss--------------~~~D~tIklWdi~tG~~L~tl~~~~~-- 278 (485)
+.+...|+++|+.+...... ...++.+|+...+.+.. ...++.|--.|+.+|+.+-+.....+
T Consensus 311 G~l~ald~~tG~~~W~~~~~-~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~ 389 (488)
T cd00216 311 GFFYVLDRTTGKLISARPEV-EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRD 389 (488)
T ss_pred ceEEEEECCCCcEeeEeEee-ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccc
Confidence 99999999999988765321 12344555333221100 11246777889999999987763211
Q ss_pred ------ce--eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc-CCCceEEEEEcCCCcEEEEEe
Q 011452 279 ------RN--KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT-EFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 279 ------~~--~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g-h~~~v~avaFspdg~llaS~s 339 (485)
.. ..+. ..++.+.+++.|+.|..+|.+||+.+-..+- ......-++|..+|++.+..-
T Consensus 390 ~~~~g~~~~~~~~~---~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 390 SWNIGFPHWGGSLA---TAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred ccccCCcccCcceE---ecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEE
Confidence 11 1222 2367888888999999999999998766532 222233345566777766544
No 330
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.18 Score=52.10 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=111.1
Q ss_pred EEEEeeCCCcEEEeecCCCe-EEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee----cCC-cce
Q 011452 207 VLTYSAQDSIYKVFDLKNYT-MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN----HLL-HRN 280 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~-~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~----~~~-~~~ 280 (485)
++-+.-..+.|.-||..+|+ ..+...+..-....+.+++.|+++. .-+.+++.++|.....+. +.. .+-
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-----HGVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-----cccEEEeccCCceeEEeccccCCCCcCCC
Confidence 44444456777777776664 3344444444456666788887652 457788887776633332 111 111
Q ss_pred eEEEEEecCCCEEEEE-e-----C---CCcEEEEECC-CCeeEEecccCCCceEEEEEcCCCcEEEEE-e-CCcEEEEeC
Q 011452 281 KKVDFIEQFNEKLLVK-Q-----E---NENLQILDVR-NFELTEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVAVWNF 348 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~-s-----~---D~tIkIWDv~-tg~~~~~l~gh~~~v~avaFspdg~llaS~-s-D~TIklWd~ 348 (485)
+.+... ++|...+.. + . -.+=.||=+. .+..++.+.+|....+.++||||++.|--+ + .+.|--+++
T Consensus 114 ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 114 NDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CceeEc-CCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 233332 444433332 2 1 1222566555 677888888888899999999999766555 4 577777765
Q ss_pred C---CcEE----EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC-eEEEEeCCCCeEEEEecCC
Q 011452 349 R---GELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG-SINISNILTGKCLAKIRAS 417 (485)
Q Consensus 349 ~---G~ll----~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg-tIklWdl~TGk~l~tl~gH 417 (485)
. |..- .-+.+...-- --+++.-.||.+-+++-. +| -|..|+.. |+.+..++-.
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~----PDG~~vDadG~lw~~a~~-----------~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGL----PDGMAVDADGNLWVAAVW-----------GGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred CcccCccCCcceEEEccCCCCC----CCceEEeCCCCEEEeccc-----------CCceEEEECCC-CcEEEEEECC
Confidence 3 3211 1111111111 235777888888865443 23 89999977 9999988775
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.05 Score=58.10 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=40.9
Q ss_pred eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee
Q 011452 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL 312 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~ 312 (485)
.|+|++. .|++|.++.--.+++-.+.|.. ++.|++-..||+++++|+. |+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-Cce
Confidence 4888886 7899988764346777888853 7899998999999999997 444
No 332
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.13 E-value=0.0051 Score=70.21 Aligned_cols=174 Identities=15% Similarity=0.162 Sum_probs=120.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCC
Q 011452 289 FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~ 366 (485)
+++.++.|+.-+.+--.|+++.+..++.. -...-..+.-.+++.|..|. .|||-|-|.+ -+.+++|..|++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~--v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s---- 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN--VSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS---- 219 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee--ccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc----
Confidence 35688888877777778999888777653 22323456678889999999 9999999996 8999999999965
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCC------CCC--cccccCCCCCCCCcc
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGL------PAE--NECSCSGDYSSGSCN 438 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~------~~~--~~~~~~~~~~~~~~~ 438 (485)
+ ..|.-.|.+|+|++.+--. ..-.-|.-||+||+.+=+.|..|.=|-++ |.+ -.|+.+...|--.|+
T Consensus 220 -i--SDfDv~GNlLitCG~S~R~--~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 220 -I--SDFDVQGNLLITCGYSMRR--YNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred -e--eeeeccCCeEEEeeccccc--ccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecc
Confidence 4 4566789999999863110 01123567999999887777766655542 222 223333332222222
Q ss_pred ---c--------cccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 439 ---V--------KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 439 ---~--------~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
- ..+.+. ..+.++.+|+.|+.||-|..+|-|++|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~-----------s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNG-----------SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCC-----------CcceeEEecCCCceEEEecccCcEeeec
Confidence 0 111111 1589999999999999999999999994
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.012 Score=63.39 Aligned_cols=179 Identities=12% Similarity=0.128 Sum_probs=111.5
Q ss_pred EEEEeCCCCeEEEEee---CC-CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 197 FVEFDDVNGKVLTYSA---QD-SIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s---~D-~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
+-+|+ |+|+.|++-+ .. ..+.++|+++++.-..+. ...-..-+|||++ +++.+...+....|-+-|+.+++ +
T Consensus 197 ~p~ws-~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~ 274 (425)
T COG0823 197 TPAWS-PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L 274 (425)
T ss_pred ccccC-cCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence 34676 7899888874 23 458899999888555443 3344567899855 44444444444667777987766 5
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEE--ECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCc--E
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--V 343 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIW--Dv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~T--I 343 (485)
..|+.-.+....=.|+ |+|.+++..+ ..+.-+|| |++.+...+....-.... .-.+||||++++-.+ ++. |
T Consensus 275 ~~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 275 PRLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred eecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCCceee
Confidence 5566443444444554 8899998875 55555655 677665544332222121 445799999999877 454 5
Q ss_pred EEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 344 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 344 klWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
-+-|.+ |.-++.|+.-.. ...-.+.|||..|+..+.
T Consensus 353 ~~~~~~~~~~~~~lt~~~~------~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 353 DKNDLASGGKIRILTSTYL------NESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEeccCCCCcEEEcccccc------CCCCCcCCCCceEEEecc
Confidence 556663 443555543221 345667899999988764
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.05 E-value=0.16 Score=50.93 Aligned_cols=191 Identities=17% Similarity=0.214 Sum_probs=106.2
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEE
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLT 209 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~La 209 (485)
.|.+-.++ +-.|+|+|+.++|+++.. ... .+ ++.=.+|++....++-. ..-+..|++- -+|++++
T Consensus 16 ~l~g~~~e-~SGLTy~pd~~tLfaV~d--~~~-------~i-~els~~G~vlr~i~l~g---~~D~EgI~y~-g~~~~vl 80 (248)
T PF06977_consen 16 PLPGILDE-LSGLTYNPDTGTLFAVQD--EPG-------EI-YELSLDGKVLRRIPLDG---FGDYEGITYL-GNGRYVL 80 (248)
T ss_dssp E-TT--S--EEEEEEETTTTEEEEEET--TTT-------EE-EEEETT--EEEEEE-SS----SSEEEEEE--STTEEEE
T ss_pred ECCCccCC-ccccEEcCCCCeEEEEEC--CCC-------EE-EEEcCCCCEEEEEeCCC---CCCceeEEEE-CCCEEEE
Confidence 34553444 999999999999998772 122 33 22225777743333211 3345679996 5788887
Q ss_pred EeeCCCcEEEeecCCCe------EEEEE----c--C-CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCC---CeEEEE
Q 011452 210 YSAQDSIYKVFDLKNYT------MLYSI----S--D-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIED---GTVLKS 272 (485)
Q Consensus 210 s~s~D~tiKlWdl~~g~------~l~tl----~--~-~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~t---G~~L~t 272 (485)
+.-.++++.+.++...+ ....+ . + ..+-.|++.| ++.|++... ..|.+|+.+.. +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE---~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE---RKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE---SSSEEEEEEESTT-SS--EE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC---CCChhhEEEccccCccceee
Confidence 76668999999983221 11222 1 1 3589999998 567766532 25777777643 333322
Q ss_pred ee--c------CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec--cc-------CCCceEEEEEcCCCcEE
Q 011452 273 FN--H------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS--RT-------EFMTPSAFIFLYENQLF 335 (485)
Q Consensus 273 l~--~------~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~g-------h~~~v~avaFspdg~ll 335 (485)
.. . ......+++|.+..+..++-+++...|-+.| .+|+.+..+ .. ...++..|+|.|+|.+.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 21 1 1223458899876666666688999999999 557765543 22 23479999999999999
Q ss_pred EEEe
Q 011452 336 LTFR 339 (485)
Q Consensus 336 aS~s 339 (485)
+++-
T Consensus 237 IvsE 240 (248)
T PF06977_consen 237 IVSE 240 (248)
T ss_dssp EEET
T ss_pred EEcC
Confidence 8865
No 335
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.063 Score=60.87 Aligned_cols=233 Identities=15% Similarity=0.181 Sum_probs=149.8
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-----------ceEEEEEcCCCCeeEEEEe
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG-----------IMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg-----------~~ll~sss~~~D~tIklWd 263 (485)
++.++ |.| +||+|+ -+.|-|=|..+++.+.++. ...|..|+++|- ..++++ ++|-.+.|-|||
T Consensus 20 A~Dw~-~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA-saD~~GrIil~d 95 (1062)
T KOG1912|consen 20 AADWS-PSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA-SADISGRIILVD 95 (1062)
T ss_pred ccccC-ccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEE-eccccCcEEEEE
Confidence 56665 445 789988 4678888999999998885 568999998751 223333 345568999999
Q ss_pred cCCCeEEEEeecCCcceeEEEEEec-CC--CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe
Q 011452 264 IEDGTVLKSFNHLLHRNKKVDFIEQ-FN--EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR 339 (485)
Q Consensus 264 i~tG~~L~tl~~~~~~~~~V~f~~~-~~--~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s 339 (485)
...+..+..|++|...+..+.|.+. +. ..|++=..-.+|-|||..||+..--..--.....+|.|-| |.+.|.-.+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 9999999999988888888888642 22 3455557788999999999987654332233455566655 444333333
Q ss_pred -CCcEEEEeC--------CCcEEEEeecCCCC------------CCCCC--------eeEEEECCCCC--EEEEEecCCC
Q 011452 340 -NRTVAVWNF--------RGELVTSFEDHLLW------------HPDCN--------TNNIYITSDQD--LIISYCKADS 388 (485)
Q Consensus 340 -D~TIklWd~--------~G~ll~tl~gH~~~------------~~~~~--------v~svafSpDG~--~LaS~s~d~~ 388 (485)
.|.+-+-++ -|+..+.-.+|... +..+. .-..+|+|.=+ +++..
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~----- 250 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF----- 250 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-----
Confidence 665555542 25666665665541 00111 01234566433 33333
Q ss_pred CCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 389 DDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
-.-+-|.|++=-+|+.++.--.+ .+-=|.+=||+
T Consensus 251 --------prellv~dle~~~~l~vvpier~--------------------------------------~akfv~vlP~~ 284 (1062)
T KOG1912|consen 251 --------PRELLVFDLEYECCLAVVPIERG--------------------------------------GAKFVDVLPDP 284 (1062)
T ss_pred --------ccceEEEcchhhceeEEEEeccC--------------------------------------CcceeEeccCC
Confidence 25688999988888888754321 22224444554
Q ss_pred --CEEEEecCCCcEEEcc
Q 011452 469 --NEIYTGNRHGLVHVWS 484 (485)
Q Consensus 469 --~~LaSgs~DgtVklWd 484 (485)
..|+++-.||-+-+|-
T Consensus 285 ~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred CcceEEEEecCCeEEEEE
Confidence 5699999999998883
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.01 E-value=0.41 Score=47.09 Aligned_cols=231 Identities=14% Similarity=0.120 Sum_probs=128.4
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
++.|+.|.++| +-+++.........+.. ...|..+..-|+=+.|+..+ + +++.+.++..=......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs----d-------~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS----D-------GQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc----C-------CccEEEEchhhcccccc
Confidence 89999999999 77888733333333322 22399999999888877754 2 35555555322221100
Q ss_pred -c-ee--------eeccccCceEEE-EeCCCCeEEEEeeCCCcEEEeecCCC-----eEEEEEc-CCcEEEEEEcCCceE
Q 011452 185 -A-LF--------ESESLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNY-----TMLYSIS-DKNVQEIKISPGIML 247 (485)
Q Consensus 185 -~-lf--------~~~~~~~~~~V~-Fs~pnG~~Las~s~D~tiKlWdl~~g-----~~l~tl~-~~~V~~VafSpg~~l 247 (485)
+ .+ .....+.+.+++ -..+++......+..++|.||.+... +.+..+. ...+.+++|.++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~ 152 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKIC 152 (275)
T ss_pred ccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEE
Confidence 0 00 001122222222 01233433334555779999998653 3455554 578999999955444
Q ss_pred EEEEcCCCCeeEEEEecCCCeEEEEeecCCcc---------eeEEE-EEecCCCEEEEEeCCCcEEEEECCCCeeEE--e
Q 011452 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHR---------NKKVD-FIEQFNEKLLVKQENENLQILDVRNFELTE--V 315 (485)
Q Consensus 248 l~sss~~~D~tIklWdi~tG~~L~tl~~~~~~---------~~~V~-f~~~~~~~lls~s~D~tIkIWDv~tg~~~~--~ 315 (485)
++.+ ....+.|+.+|....-+...... ...+. |--++++.|++. |..--.-|.. |+..+ .
T Consensus 153 -v~~~----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~ 224 (275)
T PF00780_consen 153 -VGTS----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKN-GEPSRKST 224 (275)
T ss_pred -EEeC----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCC-CCcCcccE
Confidence 4432 36788899888765444211111 11121 111335555542 3333444544 43322 2
Q ss_pred cccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCC
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHL 360 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~ 360 (485)
+.= ...+.++++ ...+|+...++.|.||++. |++++++.++.
T Consensus 225 i~W-~~~p~~~~~--~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 225 IQW-SSAPQSVAY--SSPYLIAFSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEc-CCchhEEEE--ECCEEEEECCCEEEEEECcCCcEEEEEECCC
Confidence 211 235666666 4457888887779999995 99999998764
No 337
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.96 E-value=0.55 Score=48.69 Aligned_cols=211 Identities=10% Similarity=0.086 Sum_probs=123.7
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecC------CC-eEEEEEcC-------CcEEEEEEcCCceEEEEEc----
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NY-TMLYSISD-------KNVQEIKISPGIMLLIFTK---- 252 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~------~g-~~l~tl~~-------~~V~~VafSpg~~ll~sss---- 252 (485)
.++-+|.|+|+ |.|..-++...-++..|+|.. .. .++-++.. .....|.|+...-.+++..
T Consensus 21 ~L~N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 21 GLRNAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cccccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 45667899998 789999999889999999986 22 24566652 2466677774332322210
Q ss_pred ------CCCCeeEEEEecCCCeEE-----EEee-cCCccee-EEEEEe-cCCCEEEEEe-CCCcEEEEECCCCeeEEecc
Q 011452 253 ------ASGHVPLKILSIEDGTVL-----KSFN-HLLHRNK-KVDFIE-QFNEKLLVKQ-ENENLQILDVRNFELTEVSR 317 (485)
Q Consensus 253 ------~~~D~tIklWdi~tG~~L-----~tl~-~~~~~~~-~V~f~~-~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~ 317 (485)
...|+||-=|.-.-+... ..+. .....++ .+++.. ..+.+|-++- ..++|.++|-.=.+ +. +.
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~-~~ 177 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PP-LP 177 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-cc-CC
Confidence 023467777764322221 1111 1112333 344421 1134555553 66777777744221 11 11
Q ss_pred cCCC--------ceEEEEEcCCCcEEEEEe--------------CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 318 TEFM--------TPSAFIFLYENQLFLTFR--------------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 318 gh~~--------~v~avaFspdg~llaS~s--------------D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
+-+. .+.-+ -.-.+++++|-. -|-|-++|.+|.+++.|..- .. .+. =|.|++.|
T Consensus 178 g~F~DP~iPagyAPFnI-qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~-g~-LNa-PWG~a~AP 253 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNV-QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS-GR-LNA-PWGLAIAP 253 (336)
T ss_pred CCccCCCCCCCCCCcce-EEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccC-Cc-ccC-CceeeeCh
Confidence 1110 11111 112466666653 35899999999999998522 11 122 36888866
Q ss_pred ------CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 376 ------DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 376 ------DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
.|++|+---- ||+|+.+|..+|+.+-.|.+-++
T Consensus 254 a~FG~~sg~lLVGNFG-----------DG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 254 ESFGSLSGALLVGNFG-----------DGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred hhhCCCCCCeEEeecC-----------CceeEEecCCCCceeeeecCCCC
Confidence 6888886543 89999999999999999988664
No 338
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.92 E-value=0.0035 Score=63.06 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=93.5
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE-EEEEe-CCcEEEEeCC-Cc-EEEEeecCCCCCCCCCeeEEEECC
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l-laS~s-D~TIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSp 375 (485)
+..++|+++--+.+.....-...|.+++-.|..|. ++.|+ ||.|-|||.+ +. .+-.|..|... ++.|-|.|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~-----i~eV~FHp 233 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE-----IWEVHFHP 233 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-----hhheeccC
Confidence 35677777643332222222335888887776555 45556 9999999996 44 45678889887 99999999
Q ss_pred -CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccc-cccccchh
Q 011452 376 -DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHA-SRIRSTVA 453 (485)
Q Consensus 376 -DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 453 (485)
+++.|.+++. ||++-.||.. ++.|. +...... -.+|+.---.|+ -.+.+.++
T Consensus 234 k~p~~Lft~se-----------dGslw~wdas-~~~l~-i~~~~s~-------------~s~WLsgD~v~s~i~i~~ll~ 287 (319)
T KOG4714|consen 234 KNPEHLFTCSE-----------DGSLWHWDAS-TTFLS-ISNQASV-------------ISSWLSGDPVKSRIEITSLLP 287 (319)
T ss_pred CCchheeEecC-----------CCcEEEEcCC-CceEE-ecCcccc-------------ccccccCCcccceEeeecccc
Confidence 7889999886 7999999955 55554 2111100 001111100000 11222222
Q ss_pred cccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 454 EALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 454 ~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+--..|. .|+=-|..|++|+.-+.|.|.++
T Consensus 288 ~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 288 SRSLSIN--SFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred ccceeee--eeeccCceEEeccccceEEEecc
Confidence 2112343 46667899999999999988753
No 339
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.79 E-value=0.0044 Score=67.86 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=55.6
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccc
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASR 447 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (485)
|.+.+++|+.+.|+-||. ||+|.|||..++ +.++.-+.
T Consensus 262 v~~ca~sp~E~kLvlGC~-----------DgSiiLyD~~~~--~t~~~ka~----------------------------- 299 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCE-----------DGSIILYDTTRG--VTLLAKAE----------------------------- 299 (545)
T ss_pred ceEEecCcccceEEEEec-----------CCeEEEEEcCCC--eeeeeeec-----------------------------
Confidence 889999999999999997 799999998665 33332222
Q ss_pred cccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 448 IRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 448 ~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
-..+-++|+|+|.+++.||.-|.+.+||+
T Consensus 300 ---------~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 300 ---------FIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ---------ccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 14567999999999999999999999994
No 340
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.77 E-value=0.0043 Score=62.43 Aligned_cols=97 Identities=8% Similarity=0.080 Sum_probs=65.3
Q ss_pred eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee-EEecccCCCceEEEEEcC-CCcEE
Q 011452 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL-TEVSRTEFMTPSAFIFLY-ENQLF 335 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~-~~~l~gh~~~v~avaFsp-dg~ll 335 (485)
..+.|++.--+.+..-.-.+..+..++-.|.....++.|++||.+-|||+++... ...+..|...++.|-|.| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 4456665332222111111233555554433344555578999999999998743 445688999999999987 67788
Q ss_pred EEEe-CCcEEEEeCCCcEEE
Q 011452 336 LTFR-NRTVAVWNFRGELVT 354 (485)
Q Consensus 336 aS~s-D~TIklWd~~G~ll~ 354 (485)
.+++ ||.+--||..++.+.
T Consensus 240 ft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred eEecCCCcEEEEcCCCceEE
Confidence 8888 999999998876554
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.63 E-value=0.0006 Score=75.12 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=106.4
Q ss_pred cCCcceeEEEEEecCCCEEEEEe----CCCcEEEEECCCC--eeEEe---cccCCCceEEEEEcCCCcEEEEEe-CCcEE
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNF--ELTEV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s----~D~tIkIWDv~tg--~~~~~---l~gh~~~v~avaFspdg~llaS~s-D~TIk 344 (485)
+|...-..++|++.|-..|++|= .|-.++|||+.++ -+.+. ..+-....+++++.-|.+++++|. .+.|+
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 44445568888877666777762 6789999999987 22221 112233456888899999999999 99999
Q ss_pred EEeCCCcEEEEeecCCCCCCCCCeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeC-CC-CeEEEEecCCCCCC
Q 011452 345 VWNFRGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNI-LT-GKCLAKIRASNGLP 421 (485)
Q Consensus 345 lWd~~G~ll~tl~gH~~~~~~~~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl-~T-Gk~l~tl~gH~~~~ 421 (485)
+.|++..+.+..+-.+-. |.++.+.| .+.|+++.+ ||-|-+||- .. .+.+..+....+
T Consensus 180 ifdlRqs~~~~~svnTk~-----vqG~tVdp~~~nY~cs~~------------dg~iAiwD~~rnienpl~~i~~~~N-- 240 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSVNTKY-----VQGITVDPFSPNYFCSNS------------DGDIAIWDTYRNIENPLQIILRNEN-- 240 (783)
T ss_pred hhhhhhhhhhhhhhhhhh-----cccceecCCCCCceeccc------------cCceeeccchhhhccHHHHHhhCCC--
Confidence 999975554433323322 67888999 999999986 589999992 21 233334432221
Q ss_pred CCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEEecCC-CcEEEccC
Q 011452 422 AENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYTGNRH-GLVHVWSN 485 (485)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs~D-gtVklWd~ 485 (485)
++. ..+.+++|.|-.. .|++-++| +||++.++
T Consensus 241 ----------------------~~~----------~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 241 ----------------------KKP----------KQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred ----------------------Ccc----------cceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 011 2688999999764 35555554 68887763
No 342
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.61 E-value=0.035 Score=63.70 Aligned_cols=178 Identities=11% Similarity=0.034 Sum_probs=117.3
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
++.++.-|+.-..+-..|+.++++..+.. ... |.+- -+++.+..+... ++|-|-|..+-+.+++|..|++.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~---v~imR~Nnr~lf~G~t~--G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG---VTIMRYNNRNLFCGDTR--GTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc---eEEEEecCcEEEeeccc--ceEEeecCCcCceeeeeeccccce
Confidence 34566667666666788998887765553 222 3333 455666654443 899999999999999999999988
Q ss_pred eEEEEEecCCCEEEEEe---------CCCcEEEEECCCCeeEEecccCCCceEEEEEcC--CCcEEEEEeCCcEEEEeCC
Q 011452 281 KKVDFIEQFNEKLLVKQ---------ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY--ENQLFLTFRNRTVAVWNFR 349 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s---------~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp--dg~llaS~sD~TIklWd~~ 349 (485)
...+. .|..|++.| .|.-|++||+++=+.+..+.=|.+ +.-+.|.| -.++.++++-|...+-|..
T Consensus 221 SDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 221 SDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC-chhhhhcccccceEEEEecccceeecccc
Confidence 77664 367777754 367789999998665544432222 12233544 4555555558888887731
Q ss_pred --Cc-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 350 --GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 350 --G~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
++ ....+--|... ..+.+..||++|+.||-+.. +|-|++|-
T Consensus 297 ~lsNP~~~~~~v~p~~---s~i~~fDiSsn~~alafgd~-----------~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNG---SGISAFDISSNGDALAFGDH-----------EGHVNLWA 340 (1118)
T ss_pred ccCCCccceeEEccCC---CcceeEEecCCCceEEEecc-----------cCcEeeec
Confidence 22 23333223221 11789999999999999865 79999996
No 343
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.7 Score=47.80 Aligned_cols=203 Identities=12% Similarity=0.108 Sum_probs=124.9
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc----C---CcEEEEE
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----D---KNVQEIK 240 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~----~---~~V~~Va 240 (485)
+.+.-|+...|+. ..|..-. .......++ ..|.++++ +.-+.+++++++.....+. + ..-++++
T Consensus 47 ~~i~r~~~~~g~~----~~~~~p~-~~~~~~~~d-~~g~Lv~~---~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 47 GRIHRLDPETGKK----RVFPSPG-GFSSGALID-AGGRLIAC---EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred CeEEEecCCcCce----EEEECCC-Ccccceeec-CCCeEEEE---ccccEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence 4555556555543 2344311 112235565 45655543 3456678877666533332 1 3467889
Q ss_pred EcCCceEEEEEcC-----CC--CeeEEEEecC-CCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCC--
Q 011452 241 ISPGIMLLIFTKA-----SG--HVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-- 309 (485)
Q Consensus 241 fSpg~~ll~sss~-----~~--D~tIklWdi~-tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~t-- 309 (485)
+.|++.+.++... .. -.+-.||-+. .|...+-+..+...-+.|+|+ ||+..|..+ +..+.|.-+++..
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~S-pDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFS-PDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEEC-CCCCEEEEEeCCCCeEEEEecCccc
Confidence 9987777666443 11 0122466655 678888777665566799997 778788877 5778888887652
Q ss_pred Ce-----eEEecccCCCceEEEEEcCCCcEEEEEe-CC-cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEE-CCCCCEEE
Q 011452 310 FE-----LTEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLII 381 (485)
Q Consensus 310 g~-----~~~~l~gh~~~v~avaFspdg~llaS~s-D~-TIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDG~~La 381 (485)
+. .......+...+-.++.--||.+.+++- ++ -|..|+.+|+++...+-...+ +.+++| .|+.+.|.
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~-----~t~~~FgG~~~~~L~ 271 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKR-----PTNPAFGGPDLNTLY 271 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCC-----CccceEeCCCcCEEE
Confidence 21 1222223456667777778888887555 44 899999999999988877544 566777 45666666
Q ss_pred EEec
Q 011452 382 SYCK 385 (485)
Q Consensus 382 S~s~ 385 (485)
..+.
T Consensus 272 iTs~ 275 (307)
T COG3386 272 ITSA 275 (307)
T ss_pred EEec
Confidence 5553
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.49 E-value=1.1 Score=45.01 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=106.3
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--C-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC--eE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG--TV 269 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG--~~ 269 (485)
+..++|++.++.+.|.....+.|---++ +|+.+..++ + +..-.|++..++.++++.. .++++.+.++... ..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E--r~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEE--RDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEET--TTTEEEEEEE----TT-
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEc--CCCcEEEEEEecccccc
Confidence 4579998545666666666777766665 688887775 3 4688899997777777643 3478888877321 11
Q ss_pred ----EEEee--cC---CcceeEEEEEecCCCEEEEEeCCCcEEEEECCC---CeeEEe--------cccCCCceEEEEEc
Q 011452 270 ----LKSFN--HL---LHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---FELTEV--------SRTEFMTPSAFIFL 329 (485)
Q Consensus 270 ----L~tl~--~~---~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t---g~~~~~--------l~gh~~~v~avaFs 329 (485)
.+.+. -. ......|+|. +.++.|++..+....+|+.+.. +..+.. .......+++++|.
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred chhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 12232 11 1123589997 5577888888888888888764 222221 12244578999998
Q ss_pred CC-CcEEEEEe-CCcEEEEeCCCcEEEEee--c--CCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 330 YE-NQLFLTFR-NRTVAVWNFRGELVTSFE--D--HLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 330 pd-g~llaS~s-D~TIklWd~~G~ll~tl~--g--H~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
|. |.+++-+. .+.|-..|.+|+.+..+. . |.++..-..--.|+|.|||.+.++.
T Consensus 180 p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred CCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 76 56666666 999999998899876543 2 1111101124689999999988874
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.49 E-value=0.00054 Score=75.50 Aligned_cols=191 Identities=17% Similarity=0.137 Sum_probs=121.3
Q ss_pred cCEEEEEeCCCeEEeeecccCc-E-EEEeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccC--C
Q 011452 105 RDIVFALAQSGVCAAFCRETNQ-R-ICFLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRG--K 179 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~-~-l~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G--~ 179 (485)
+-+++.|+.+|.|.+=....-. - --+.++ +.....+++|++-. +.||. +.+..+. --.++|||+.++ .
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~-~ar~Ct~lAwneLDtn~LAa-gldkhrn-----ds~~~Iwdi~s~ltv 142 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPG-YARPCTSLAWNELDTNHLAA-GLDKHRN-----DSSLKIWDINSLLTV 142 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceeccc-ccccccccccccccHHHHHh-hhhhhcc-----cCCccceecccccCC
Confidence 3578888888888886543111 0 113333 55678899999863 23443 3333322 135779999887 3
Q ss_pred cCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-CeEEEEEcCCcEEEEEEcC--CceEEEEEcCCCC
Q 011452 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDKNVQEIKISP--GIMLLIFTKASGH 256 (485)
Q Consensus 180 ~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~~l~tl~~~~V~~VafSp--g~~ll~sss~~~D 256 (485)
+-.. ++|..+.+.-+.+|.+. -|.+++.+|..-+.|+++|+.. ..-...+....|+.+.++| .+.++++ .|
T Consensus 143 Pke~-~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~----~d 216 (783)
T KOG1008|consen 143 PKES-PLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN----SD 216 (783)
T ss_pred Cccc-cccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc----cc
Confidence 3222 23443334444578886 7889999999999999999872 2223344456788999998 5555443 35
Q ss_pred eeEEEEecCC--CeEEEEeecCCc----ceeEEEEEecCCCEEEEEe-CCCcEEEEECC
Q 011452 257 VPLKILSIED--GTVLKSFNHLLH----RNKKVDFIEQFNEKLLVKQ-ENENLQILDVR 308 (485)
Q Consensus 257 ~tIklWdi~t--G~~L~tl~~~~~----~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~ 308 (485)
+-|-+||..- -..+.++.+... +...++++|-..+.|++-+ .-+||+++|+.
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 7899999311 112333322112 2678999987788888877 66999999987
No 346
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.49 E-value=0.18 Score=59.58 Aligned_cols=113 Identities=13% Similarity=0.189 Sum_probs=75.5
Q ss_pred EEEEEcCCCcEEEEE-----eC-CcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 324 SAFIFLYENQLFLTF-----RN-RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 324 ~avaFspdg~llaS~-----sD-~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
.+|.|--||++||.. .+ ++|++||.+|.|-.+=+--..- =.++++=|.|.+||+--. .++|
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l-----~~~LsWkPsgs~iA~iq~--------~~sd 265 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGL-----QHSLSWKPSGSLIAAIQC--------KTSD 265 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCccccc-----ccceeecCCCCeEeeeee--------cCCC
Confidence 468899999999984 26 8999999997765443322221 246888999999998765 2456
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEE---e
Q 011452 398 GSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYT---G 474 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaS---g 474 (485)
++|.++. .+|-. |.. +.-..+.+ -..|..|+|+.++..||. .
T Consensus 266 ~~IvffE-rNGL~------hg~----f~l~~p~d------------------------e~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 266 SDIVFFE-RNGLR------HGE----FVLPFPLD------------------------EKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred CcEEEEe-cCCcc------ccc----cccCCccc------------------------ccchheeeecCCCCceeeeecc
Confidence 7899987 34532 221 00000000 014889999999999998 5
Q ss_pred cCCCcEEEcc
Q 011452 475 NRHGLVHVWS 484 (485)
Q Consensus 475 s~DgtVklWd 484 (485)
.....|+||-
T Consensus 311 ~e~~~v~lwt 320 (1265)
T KOG1920|consen 311 LENSLVQLWT 320 (1265)
T ss_pred cccceEEEEE
Confidence 5666699994
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.45 E-value=1.4 Score=45.71 Aligned_cols=261 Identities=9% Similarity=0.047 Sum_probs=139.0
Q ss_pred ccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEE-Eeec-------CCc--------ccEEEEEEeeCCCEEEEEEe
Q 011452 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRIC-FLNV-------TAD--------EVIRSLFYNKNNDSLITVSV 156 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~-tl~g-------~~~--------~~i~sv~~spdg~~Las~S~ 156 (485)
...+....+| |+.||-.. ++-+-+++..+|+..+ |-.| -.+ +.-..+.|||||+.||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 3445555555 77777665 5678888877776554 1112 111 12356789999999999776
Q ss_pred ecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCce--EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE-EEEc-
Q 011452 157 YASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG--FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS- 232 (485)
Q Consensus 157 d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~--~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l-~tl~- 232 (485)
|.+.= +.+.+-+..... ...|. .+.+ |--|.... .-.+.|+|+++++.. ..+.
T Consensus 121 d~~~v------~~~~~~~~~~~~------------~~yp~~~~~~Y-Pk~G~~np----~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 121 DEREV------PEYPLPDYSPPD------------SQYPEVESIRY-PKAGDPNP----RVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp E-TTS-------EEEEEEESSST------------ESS-EEEEEE---BTTS-------EEEEEEEESSSTCCCEE---H
T ss_pred CCcCC------ceEEeeccCCcc------------ccCCccccccc-CCCCCcCC----ceEEEEEECCCCcEEEeeecc
Confidence 43221 333332211110 00111 2222 11122211 124556888888742 2222
Q ss_pred -----CCcEEEEEEcCCce-EEEE--EcCCCCeeEEEEecCCCeEEEEeec-CCcce---eEEEEEecCCCEEEE-EeCC
Q 011452 233 -----DKNVQEIKISPGIM-LLIF--TKASGHVPLKILSIEDGTVLKSFNH-LLHRN---KKVDFIEQFNEKLLV-KQEN 299 (485)
Q Consensus 233 -----~~~V~~VafSpg~~-ll~s--ss~~~D~tIklWdi~tG~~L~tl~~-~~~~~---~~V~f~~~~~~~lls-~s~D 299 (485)
+..+..+.++|++. +++. ........+.+.|.++|++-..+.. ..+.+ ....|..+++..++- ...|
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 34688999997555 3332 2223335677789988877544432 11233 256665234444444 5577
Q ss_pred CcEEEE--ECCCCeeEEecccCCCceEE-EEEcCCCcEEE-EEe-C--CcEEEEeC--C-CcEEEEeecCCCCCCCCCee
Q 011452 300 ENLQIL--DVRNFELTEVSRTEFMTPSA-FIFLYENQLFL-TFR-N--RTVAVWNF--R-GELVTSFEDHLLWHPDCNTN 369 (485)
Q Consensus 300 ~tIkIW--Dv~tg~~~~~l~gh~~~v~a-vaFspdg~lla-S~s-D--~TIklWd~--~-G~ll~tl~gH~~~~~~~~v~ 369 (485)
|--+|+ |..++.......| ...|.. +.+.++++.+. ++. + ..-.||-+ + |..++.|+.....| .
T Consensus 258 G~~hly~~~~~~~~~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-----~ 331 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-----Y 331 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-----E
T ss_pred CCcEEEEEcccccceeccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-----e
Confidence 655555 6776775544444 446645 56788877554 444 2 35566655 6 67788888776552 5
Q ss_pred EEEECCCCCEEEEEec
Q 011452 370 NIYITSDQDLIISYCK 385 (485)
Q Consensus 370 svafSpDG~~LaS~s~ 385 (485)
++.|||||++++-.|.
T Consensus 332 ~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 332 SASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEE-TTSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEc
Confidence 8999999999987764
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.41 E-value=0.28 Score=54.17 Aligned_cols=91 Identities=10% Similarity=0.029 Sum_probs=67.8
Q ss_pred EEEECCCCeeEEe---cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCC
Q 011452 303 QILDVRNFELTEV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 378 (485)
Q Consensus 303 kIWDv~tg~~~~~---l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~ 378 (485)
.+|++...+..++ .-.....|.+.+++|+.+.|+-|+ ||+|.+||.+-+ ++++..+..- ..-++++|+|.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t~~~ka~~~-----P~~iaWHp~ga 312 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-VTLLAKAEFI-----PTLIAWHPDGA 312 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-eeeeeeeccc-----ceEEEEcCCCc
Confidence 4566665544332 124566899999999999999999 999999999633 3333333322 67899999999
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
+++.|+. -|-|.+||+.-.-+
T Consensus 313 i~~V~s~-----------qGelQ~FD~ALspi 333 (545)
T PF11768_consen 313 IFVVGSE-----------QGELQCFDMALSPI 333 (545)
T ss_pred EEEEEcC-----------CceEEEEEeecCcc
Confidence 9999986 59999999875443
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.38 E-value=0.58 Score=50.04 Aligned_cols=49 Identities=10% Similarity=0.210 Sum_probs=37.0
Q ss_pred cEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 216 IYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 216 tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
.|+|++. .|+++.++. .+.|-.+.|+.+..|++-. .|+++++.|+. |+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~---~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQ---SDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEE---cCCEEEEEeCC-Cce
Confidence 5999985 677777764 5789999999766666553 34899999985 555
No 350
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.37 E-value=0.16 Score=58.36 Aligned_cols=282 Identities=17% Similarity=0.165 Sum_probs=154.5
Q ss_pred EEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeec
Q 011452 143 FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 222 (485)
Q Consensus 143 ~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl 222 (485)
.|.|---.+|.+| ||+=.++.+.|+- .+|+++.- . +.-.|..++.+. |.--+||.|=.-+.+-||..
T Consensus 22 SWHPsePlfAVA~------fS~er~GSVtIfa-dtGEPqr~---V--t~P~hatSLCWH-pe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 22 SWHPSEPLFAVAS------FSPERGGSVTIFA-DTGEPQRD---V--TYPVHATSLCWH-PEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccCCCCceeEEEE------ecCCCCceEEEEe-cCCCCCcc---c--ccceehhhhccC-hHHHHHhhccccceeEEEec
Confidence 4566666777766 5666778888854 89998421 1 112344467786 77788898888899999986
Q ss_pred CCCeEEEEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc----ceeEEEE-EecCCC---
Q 011452 223 KNYTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH----RNKKVDF-IEQFNE--- 291 (485)
Q Consensus 223 ~~g~~l~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~----~~~~V~f-~~~~~~--- 291 (485)
.+ +..++.. ...|+-+.|||+|..+.+. +.-+.+.+|...--..+++.+-.+| +..-+.| .+++++
T Consensus 89 ~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~--d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~ 165 (1416)
T KOG3617|consen 89 NT-TETHTVVETHPAPIQGLDWSHDGTVLMTL--DNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKF 165 (1416)
T ss_pred CC-ceeeeeccCCCCCceeEEecCCCCeEEEc--CCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhh
Confidence 54 4555553 4589999999855544442 4558999997642222333221111 1122223 233332
Q ss_pred ---EEEEEeCCCcEE-EEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCC----CC
Q 011452 292 ---KLLVKQENENLQ-ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHL----LW 362 (485)
Q Consensus 292 ---~lls~s~D~tIk-IWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~----~~ 362 (485)
+.++++++.-+- ..+.+-...-... .|.+ +|+|..|.-+. +|||--=|-.|++.+...-.. +|
T Consensus 166 ~laKaaVtgDe~alD~~fnwk~~~a~rs~-~ksg-------v~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf 237 (1416)
T KOG3617|consen 166 KLAKAAVTGDESALDEPFNWKESLAERSD-EKSG-------VPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLF 237 (1416)
T ss_pred hhhhhhccCchhhhcccccCccchhhccc-cccC-------CCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHH
Confidence 445555555443 4443311111111 1221 68888888888 999987777788766554332 34
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEE-eCCCCe----EEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINIS-NILTGK----CLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklW-dl~TGk----~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
++.|..-.+.+ . +=++-+. -..+|+ |-.++.|-.+ ++.|. ++|
T Consensus 238 ~~~~eai~~i~-----------e-----------~lr~~l~~v~~~G~~ee~~~vk~sgk~G--------grqGg--iA~ 285 (1416)
T KOG3617|consen 238 MGYCEAISIII-----------E-----------FLRDCLIFVLAKGTSEERCAVKVSGKLG--------GRQGG--IAC 285 (1416)
T ss_pred hcccceEEEEe-----------e-----------eceeeEEEecCCCchHHhhhhhhccccC--------CccCc--ccc
Confidence 44432111110 0 0111111 111121 2223333221 12222 333
Q ss_pred cccccccccccccchhccc---CCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 438 NVKKHSHASRIRSTVAEAL---EDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l---~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
--+- .-++.+.-|++ +.+.+++|+.-+..|.-|-..|.|.+|.
T Consensus 286 sEss----GvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 286 SESS----GVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred cccc----ccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 2221 12333333433 3899999999999999999999999994
No 351
>PRK10115 protease 2; Provisional
Probab=96.36 E-value=1.8 Score=49.47 Aligned_cols=182 Identities=5% Similarity=-0.006 Sum_probs=95.9
Q ss_pred EEEEeCCCCeEEEEeeC-----CCcEEEeecCCCeEEE-EEcCCcEEEEEEcCCc-eEEEEEcCC---CCeeEEEEecCC
Q 011452 197 FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLY-SISDKNVQEIKISPGI-MLLIFTKAS---GHVPLKILSIED 266 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~-----D~tiKlWdl~~g~~l~-tl~~~~V~~VafSpg~-~ll~sss~~---~D~tIklWdi~t 266 (485)
.+.+| |||++||.+.. .-++++=|+.+|+.+- .+.+.. ..++|+|++ .++.+.-.. ....|.++++.|
T Consensus 131 ~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 131 GMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 66776 79999998742 3467788888886432 222222 469999644 444432211 124678889998
Q ss_pred C--eEEEEeecCCcceeEEEEEecCCCEEEEEe---CCCcEEEEEC--CCCeeEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 267 G--TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDV--RNFELTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 267 G--~~L~tl~~~~~~~~~V~f~~~~~~~lls~s---~D~tIkIWDv--~tg~~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
+ +-...+....+...-..+.+.++..+++.+ .+..+.+++. .+++....+.........+. ...+.+++...
T Consensus 209 ~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn 287 (686)
T PRK10115 209 PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSN 287 (686)
T ss_pred ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEc
Confidence 8 333334322222331222334677776643 5678999994 34553333322333333333 44556555554
Q ss_pred -C-CcEEEEeC--CC-cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 340 -N-RTVAVWNF--RG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 340 -D-~TIklWd~--~G-~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
+ ..-+|..+ .. ...+.+-.|.. +..+.++.++. ..++++...
T Consensus 288 ~~~~~~~l~~~~~~~~~~~~~l~~~~~---~~~i~~~~~~~-~~l~~~~~~ 334 (686)
T PRK10115 288 RHGKNFGLYRTRVRDEQQWEELIPPRE---NIMLEGFTLFT-DWLVVEERQ 334 (686)
T ss_pred CCCCCceEEEecCCCcccCeEEECCCC---CCEEEEEEEEC-CEEEEEEEe
Confidence 2 34455543 31 11233434421 12377888873 356666654
No 352
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.35 E-value=1.4 Score=44.77 Aligned_cols=172 Identities=15% Similarity=0.092 Sum_probs=103.7
Q ss_pred CeEEEEEc-C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCccee--EEEEEecCCCEEEE-EeC
Q 011452 225 YTMLYSIS-D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLV-KQE 298 (485)
Q Consensus 225 g~~l~tl~-~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~--~V~f~~~~~~~lls-~s~ 298 (485)
++.+.+.+ + ...+.+.|-+++.|.-|..--+...|+.+|++||+.++...-. ...+ .++.. +++|.. +=.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~---~d~l~qLTWk 108 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL---GDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE---TTEEEEEESS
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-ccccceeEEEE---CCEEEEEEec
Confidence 45566664 2 4689999966666666655555679999999999998765521 2222 44443 344444 447
Q ss_pred CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 299 NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 299 D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
+++.-+||..+.+.+.++. ....=|.++ .||+.|+.+. ..++..+|.. -+.+.+++-...-.|-..+|.+-+- |
T Consensus 109 ~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred CCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 8999999999999988874 234557776 4555555444 7778888874 5555555433222222336777764 6
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
|.+.|=-=. ...|-.-|..||+++..+.
T Consensus 185 G~IyANVW~-----------td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 185 GKIYANVWQ-----------TDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp TEEEEEETT-----------SSEEEEEETTT-BEEEEEE
T ss_pred CEEEEEeCC-----------CCeEEEEeCCCCeEEEEEE
Confidence 766664433 2456666999999998874
No 353
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.31 E-value=0.37 Score=54.09 Aligned_cols=186 Identities=10% Similarity=0.107 Sum_probs=97.7
Q ss_pred ccEEEEEEeeCCCEEEEEEee--cCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 137 EVIRSLFYNKNNDSLITVSVY--ASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d--~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
..+.+.++||||+.+|.+-.. ...| ..-.||=...|... .++..... ...-.|| |||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d------~~s~Lwv~~~gg~~--~~lt~g~~---~t~PsWs-pDG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPD------PASSLWVGPLGGVA--VQVLEGHS---LTRPSWS-LDADAVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCC------cceEEEEEeCCCcc--eeeecCCC---CCCceEC-CCCCceEEEecC
Confidence 468899999999999886631 1112 34445544323221 23322211 2345676 788877776532
Q ss_pred -CcEEEe-----------ecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEE---EecCCCeE-E---EEee-
Q 011452 215 -SIYKVF-----------DLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKI---LSIEDGTV-L---KSFN- 274 (485)
Q Consensus 215 -~tiKlW-----------dl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIkl---Wdi~tG~~-L---~tl~- 274 (485)
..+++. ++..++....+ +..|.++++||+|..++.-.. +.|.+ =..+.|+. | ..+.
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeec
Confidence 222332 33333322211 347999999987765555432 35555 55566751 1 1122
Q ss_pred cCCcceeEEEEEecCCCEEEEEeCCCcEEEE--ECCCCeeEEeccc--CCCceEEEEEcCCCcEEEEEeCCc
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQIL--DVRNFELTEVSRT--EFMTPSAFIFLYENQLFLTFRNRT 342 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s~D~tIkIW--Dv~tg~~~~~l~g--h~~~v~avaFspdg~llaS~sD~T 342 (485)
+.......++|.. ++.|+++..+..-.+| ++. |.....+.+ ....+.+|+=++ +.++++.+++.
T Consensus 494 ~l~~~~~~l~W~~--~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~~g~ 561 (591)
T PRK13616 494 GLGDTAVSLDWRT--GDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASP-STVYVTDARAV 561 (591)
T ss_pred ccCCccccceEec--CCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCC-ceEEEEcCCce
Confidence 2223346788863 5567776544444445 455 333222223 355677777666 45666555653
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.17 Score=57.54 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=93.2
Q ss_pred ecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeC-----CCEEEEEEeecCCCCcccceeEEEEeEeccC
Q 011452 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN-----NDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (485)
Q Consensus 104 s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spd-----g~~Las~S~d~~~d~stL~~~t~~lw~i~~G 178 (485)
.|+++||+|.||++-+-.+-+++..+++.. + -++.+|+++|| .++.++++ .. + +-|.. ++
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~-rpiksial~Pd~~~~~sk~fv~GG----~a------g-lvL~e--r~ 146 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-K-RPIKSIALHPDFSRQQSKQFVSGG----MA------G-LVLSE--RN 146 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-C-CcceeEEeccchhhhhhhheeecC----cc------e-EEEeh--hh
Confidence 399999999999999999999999998887 3 47999999999 33344422 11 1 22211 11
Q ss_pred CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcE------EEEEEcCCceEEEE
Q 011452 179 KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNV------QEIKISPGIMLLIF 250 (485)
Q Consensus 179 ~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V------~~VafSpg~~ll~s 250 (485)
=+..-...--++.-+.+.+|.+ .|.++|-++++| |||+|..+.+-+..++- ..| ..+.|.|...|+++
T Consensus 147 wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG 222 (846)
T KOG2066|consen 147 WLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG 222 (846)
T ss_pred hhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence 1100001111122345557777 588999888665 89999998887777741 222 34778888888886
Q ss_pred EcCCCCeeEEEEecCC
Q 011452 251 TKASGHVPLKILSIED 266 (485)
Q Consensus 251 ss~~~D~tIklWdi~t 266 (485)
-+ -+|+|..|..
T Consensus 223 -W~---d~v~i~~I~~ 234 (846)
T KOG2066|consen 223 -WG---DSVKICSIKK 234 (846)
T ss_pred -cC---CeEEEEEEec
Confidence 33 3899999873
No 355
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.034 Score=62.89 Aligned_cols=126 Identities=11% Similarity=0.157 Sum_probs=89.2
Q ss_pred EeecCCcce--eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC-----------Cc-EEEE
Q 011452 272 SFNHLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-----------NQ-LFLT 337 (485)
Q Consensus 272 tl~~~~~~~--~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd-----------g~-llaS 337 (485)
|+.|-.++. .++++++ ++.++-| ....|-+-|..+-+.++++..|+..|+.|.|.|. .+ +||+
T Consensus 8 tlpG~l~~sN~~A~Dw~~--~GLiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 8 TLPGPLSRSNRNAADWSP--SGLIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred cCCCCCCcccccccccCc--cceEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe
Confidence 455444443 3777753 3444444 5568889999999999999999999999998653 33 4555
Q ss_pred Ee-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC---C-CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 338 FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD---Q-DLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 338 ~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD---G-~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
+. .|.|.|||+. +-.+.-|+-|... +..+++-|. . ++|+.-.. -.+|-|||..||+.+
T Consensus 85 aD~~GrIil~d~~~~s~~~~l~~~~~~-----~qdl~W~~~rd~Srd~LlaIh~-----------ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLASVINWLSHSNDS-----VQDLCWVPARDDSRDVLLAIHG-----------SSTLVLWNTDTGEKF 148 (1062)
T ss_pred ccccCcEEEEEehhhhhhhhhcCCCcc-----hhheeeeeccCcchheeEEecC-----------CcEEEEEEccCCcee
Confidence 66 8999999996 7777778777665 566666553 3 33333222 379999999999998
Q ss_pred EEecC
Q 011452 412 AKIRA 416 (485)
Q Consensus 412 ~tl~g 416 (485)
.+...
T Consensus 149 Wk~~y 153 (1062)
T KOG1912|consen 149 WKYDY 153 (1062)
T ss_pred ecccc
Confidence 87654
No 356
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.027 Score=62.39 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCee-EEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 322 TPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTN-NIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~-svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
.+.-+.++|...++|... +|.|-+.-++-+.+.++.-|... |. +++|-|||++||-|-+ |||
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~-----v~~sL~W~~DGkllaVg~k-----------dG~ 85 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGEN-----VTASLCWRPDGKLLAVGFK-----------DGT 85 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCc-----cceeeeecCCCCEEEEEec-----------CCe
Confidence 456677999999999999 99888888887777777655433 44 9999999999999987 799
Q ss_pred EEEEeCCCCeEEEEe
Q 011452 400 INISNILTGKCLAKI 414 (485)
Q Consensus 400 IklWdl~TGk~l~tl 414 (485)
|+|-|+++|..+...
T Consensus 86 I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVSF 100 (665)
T ss_pred EEEEEccCCCceecc
Confidence 999999999887663
No 357
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.99 E-value=2.4 Score=43.95 Aligned_cols=99 Identities=19% Similarity=0.289 Sum_probs=57.2
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE---EEEEc------CCcEEEEEEcCC----ceEEEEEcC------
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS------DKNVQEIKISPG----IMLLIFTKA------ 253 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~---l~tl~------~~~V~~VafSpg----~~ll~sss~------ 253 (485)
..|+.++|. |||+++++- ..+.|++.+ +++.. +..+. ......|+|+|+ +.+.++.+.
T Consensus 2 ~~P~~~a~~-pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFL-PDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEE-TTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEe-CCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 467899998 799999975 499999999 56664 33442 136899999993 444444331
Q ss_pred CCCeeEEEEecCCC-------eEE-EEeec---CCcceeEEEEEecCCCEEEEE
Q 011452 254 SGHVPLKILSIEDG-------TVL-KSFNH---LLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 254 ~~D~tIklWdi~tG-------~~L-~tl~~---~~~~~~~V~f~~~~~~~lls~ 296 (485)
..+..|.-|....+ +.+ ..+.. ..|....++|. |++ +|.++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-pDG-~LYvs 130 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-PDG-KLYVS 130 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE--TTS-EEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-CCC-cEEEE
Confidence 11134444555444 122 22222 34566789997 555 66554
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.94 E-value=0.92 Score=46.17 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=102.1
Q ss_pred eEEEEecCCCeEEEEeecCC-cceeEEEEEecC------CCEEEEEe-----C-----CCcEEEEECCCC-----eeEEe
Q 011452 258 PLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQF------NEKLLVKQ-----E-----NENLQILDVRNF-----ELTEV 315 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~-~~~~~V~f~~~~------~~~lls~s-----~-----D~tIkIWDv~tg-----~~~~~ 315 (485)
.|||.|..+.+.+.++.-.. ..+.++...... .+.+++|. + .|.|.++++... ++...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888888888777665221 233444443222 34666652 1 178999999984 33222
Q ss_pred -cccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-Cc-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCC
Q 011452 316 -SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (485)
Q Consensus 316 -l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~ 392 (485)
.....+.|.+++-- +|. |+.+.+++|.+|++. .+ ++..-.-+... .+.++. .-+++|+.|..
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~----~i~sl~--~~~~~I~vgD~------- 147 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPF----YITSLS--VFKNYILVGDA------- 147 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSS----SEEEEE--EETTEEEEEES-------
T ss_pred EEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecceE----EEEEEe--ccccEEEEEEc-------
Confidence 12346788888644 555 666668999999995 55 44332222211 144444 44668888765
Q ss_pred CcCCCCeEEEEeCC-CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE
Q 011452 393 AEGNAGSINISNIL-TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI 471 (485)
Q Consensus 393 ~~~~DgtIklWdl~-TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L 471 (485)
-..|-+.... .++.+..+..... -.+|+++.|=+|++.+
T Consensus 148 ----~~sv~~~~~~~~~~~l~~va~d~~------------------------------------~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 148 ----MKSVSLLRYDEENNKLILVARDYQ------------------------------------PRWVTAAEFLVDEDTI 187 (321)
T ss_dssp ----SSSEEEEEEETTTE-EEEEEEESS-------------------------------------BEEEEEEEE-SSSEE
T ss_pred ----ccCEEEEEEEccCCEEEEEEecCC------------------------------------CccEEEEEEecCCcEE
Confidence 4677776443 2444444432110 0389999998787899
Q ss_pred EEecCCCcEEEcc
Q 011452 472 YTGNRHGLVHVWS 484 (485)
Q Consensus 472 aSgs~DgtVklWd 484 (485)
+.+..+|.|.+..
T Consensus 188 i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 188 IVGDKDGNLFVLR 200 (321)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEEcCCCeEEEEE
Confidence 9999999998764
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.92 E-value=0.92 Score=46.29 Aligned_cols=227 Identities=14% Similarity=0.120 Sum_probs=116.7
Q ss_pred EecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEee-CCCEEEEEEeecCCCC--cccceeEEEEeEeccCC
Q 011452 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNF--SSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 103 ~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~sp-dg~~Las~S~d~~~d~--stL~~~t~~lw~i~~G~ 179 (485)
|+++.|..+++|++..+-|..+-.++-..+- .....-|=+.+| ++...++ +..| .=+ +--..-...+|-...+.
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~g~~sly~a-~t~G-~vlavt~~~~~~~~~w~~~~~~ 179 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAPGDGSLYAA-ITAG-AVLAVTKNPYSSTEFWAATRFG 179 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEeccc-CCceeccceecCCCceEEEE-eccc-eEEEEccCCCCcceehhhhcCC
Confidence 3499999999999999999988777765433 222233334444 3332221 1100 000 00000123455555555
Q ss_pred cCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcE-EEEEEcCCceEEEEEcCCCC
Q 011452 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNV-QEIKISPGIMLLIFTKASGH 256 (485)
Q Consensus 180 ~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V-~~VafSpg~~ll~sss~~~D 256 (485)
+..+-+|+-.. ++-..-+||++++.. .-| =.||...|+-.++.-+ .++- +-|.+-..+-..+--..
T Consensus 180 PiF~splcv~~------sv~i~~VdG~l~~f~-~sG-~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~--- 248 (354)
T KOG4649|consen 180 PIFASPLCVGS------SVIITTVDGVLTSFD-ESG-RQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPI--- 248 (354)
T ss_pred ccccCceeccc------eEEEEEeccEEEEEc-CCC-cEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccc---
Confidence 53333333221 233323678877665 455 4589888776655543 1221 33333332222211111
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEecC--CCEEEE-EeCCCcEEEE---------ECCCCeeEEecccCCCceE
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLV-KQENENLQIL---------DVRNFELTEVSRTEFMTPS 324 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~--~~~lls-~s~D~tIkIW---------Dv~tg~~~~~l~gh~~~v~ 324 (485)
.---+|..++|..+...- ......+|.++. .++|+. ++.|+.+.|. +-+.|++.+..+ +.+.
T Consensus 249 ~ghL~w~~~~g~t~~vy~---~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~---~el~ 322 (354)
T KOG4649|consen 249 AGHLLWATQSGTTLHVYL---SPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEA---IELS 322 (354)
T ss_pred cceEEEEecCCcEEEEEe---CcccceeccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEE---eecC
Confidence 122467777876655443 122223333332 246665 5799999888 444455433221 1111
Q ss_pred EEEE-cC---CCcEEEEEeCCcEEEEeCC
Q 011452 325 AFIF-LY---ENQLFLTFRNRTVAVWNFR 349 (485)
Q Consensus 325 avaF-sp---dg~llaS~sD~TIklWd~~ 349 (485)
+=+| || ||++|+-++|.-|+-||++
T Consensus 323 ~eIFsSPvii~grl~igcRDdYv~cldl~ 351 (354)
T KOG4649|consen 323 NEIFSSPVIIDGRLLIGCRDDYVRCLDLD 351 (354)
T ss_pred cccccCCeEEccEEEEEEccCeEEEEecc
Confidence 2234 23 7998888889999999986
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.88 E-value=0.31 Score=52.84 Aligned_cols=134 Identities=15% Similarity=0.252 Sum_probs=78.3
Q ss_pred eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEE-eCCCcEEEEee
Q 011452 280 NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW-NFRGELVTSFE 357 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklW-d~~G~ll~tl~ 357 (485)
...+.++ |.+..+++ ..|+.--|+......-... +.-..++|.+.++ +|.-. +++|+|. |++.+.+.++.
T Consensus 35 p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 35 PQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp -SEEEE--TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT----
T ss_pred CeeEEEC-CCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc
Confidence 3477776 54555555 7788888888544433322 2335588999666 66665 8999995 66544323332
Q ss_pred cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 358 DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
-. ..+..|.. |.+|+..+. +.|.++|+++++.++.+.-.
T Consensus 107 ~~------~~~~~If~---G~LL~~~~~------------~~i~~yDw~~~~~i~~i~v~-------------------- 145 (443)
T PF04053_consen 107 LP------FSVEKIFG---GNLLGVKSS------------DFICFYDWETGKLIRRIDVS-------------------- 145 (443)
T ss_dssp -S------S-EEEEE----SSSEEEEET------------TEEEEE-TTT--EEEEESS---------------------
T ss_pred CC------cccceEEc---CcEEEEECC------------CCEEEEEhhHcceeeEEecC--------------------
Confidence 11 11556654 888888763 68999999999999999642
Q ss_pred cccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
.|..|.||++|+.+|=.+.|. +.|.
T Consensus 146 --------------------~vk~V~Ws~~g~~val~t~~~-i~il 170 (443)
T PF04053_consen 146 --------------------AVKYVIWSDDGELVALVTKDS-IYIL 170 (443)
T ss_dssp --------------------E-EEEEE-TTSSEEEEE-S-S-EEEE
T ss_pred --------------------CCcEEEEECCCCEEEEEeCCe-EEEE
Confidence 578899999999999988764 4443
No 361
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.82 E-value=0.47 Score=53.31 Aligned_cols=140 Identities=9% Similarity=0.007 Sum_probs=76.8
Q ss_pred CcEEEEEEcCCceEEEEEcC------CCCeeEEEEecCCCeEEEEe-ecCCcceeEEEEEecCCCEEEEEe---------
Q 011452 234 KNVQEIKISPGIMLLIFTKA------SGHVPLKILSIEDGTVLKSF-NHLLHRNKKVDFIEQFNEKLLVKQ--------- 297 (485)
Q Consensus 234 ~~V~~VafSpg~~ll~sss~------~~D~tIklWdi~tG~~L~tl-~~~~~~~~~V~f~~~~~~~lls~s--------- 297 (485)
..+.+.++||++..+++... +....|.+++. .|.. +.+ .+ .....-.|+ |+++.+.+.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g--~~~t~PsWs-pDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG--HSLTRPSWS-LDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC--CCCCCceEC-CCCCceEEEecCcceEEEe
Confidence 35778999986665555441 22234555554 3333 333 22 123445554 5555444432
Q ss_pred -CCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEE---eCC-CcEEEEeec-CCCC-CCCCCe
Q 011452 298 -ENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW---NFR-GELVTSFED-HLLW-HPDCNT 368 (485)
Q Consensus 298 -~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklW---d~~-G~ll~tl~g-H~~~-~~~~~v 368 (485)
.++ .+.+.++..++..+ .....|.++.|||||..+|--.++.|.|= .-+ |+ ..+.. +... .....+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTA 499 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCcc
Confidence 223 33334777776654 23446999999999999987777766652 223 65 22210 0000 001115
Q ss_pred eEEEECCCCCEEEEE
Q 011452 369 NNIYITSDQDLIISY 383 (485)
Q Consensus 369 ~svafSpDG~~LaS~ 383 (485)
.++.|.+|+.+++..
T Consensus 500 ~~l~W~~~~~L~V~~ 514 (591)
T PRK13616 500 VSLDWRTGDSLVVGR 514 (591)
T ss_pred ccceEecCCEEEEEe
Confidence 789999999977553
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.82 E-value=0.44 Score=42.41 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=51.6
Q ss_pred eeEEEEEecCC---CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEE
Q 011452 280 NKKVDFIEQFN---EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS 355 (485)
Q Consensus 280 ~~~V~f~~~~~---~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~t 355 (485)
|.++++...++ ..|+++++|..||||+=. +++... .....|.+++-++.++ |+.+- +|||-+++-.-++-+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei-~e~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI-TETDKVTSLCSLGGGR-FAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE-ecccceEEEEEcCCCE-EEEEecCCEEEEEeCcceeeee
Confidence 34455543333 479999999999999854 444444 3556788888777755 66666 9999999875444443
Q ss_pred eecCC
Q 011452 356 FEDHL 360 (485)
Q Consensus 356 l~gH~ 360 (485)
=..|.
T Consensus 78 KSK~~ 82 (111)
T PF14783_consen 78 KSKNQ 82 (111)
T ss_pred ccCCC
Confidence 34444
No 363
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.74 E-value=0.021 Score=56.51 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=85.4
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE-------cCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCC
Q 011452 292 KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF-------LYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLL 361 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF-------spdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~ 361 (485)
.+++.+.|++|+=.+++--+. .+.+.-| .--+..++.+. |+.|.+|+.+ |+..-....-..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~---------s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e 102 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKE---------SCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE 102 (238)
T ss_pred hhccccCCcccccchhhhhhh---------hhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence 356678899999888874332 1222222 22234456666 9999999875 543221111111
Q ss_pred CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccc
Q 011452 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 362 ~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 441 (485)
.....|....++.+...++. ||-||.|+++-++.+-..-.|+.
T Consensus 103 ----~i~~~Ip~~~~~~~~c~~~~-----------dg~ir~~n~~p~k~~g~~g~h~~---------------------- 145 (238)
T KOG2444|consen 103 ----SIDLGIPNGRDSSLGCVGAQ-----------DGRIRACNIKPNKVLGYVGQHNF---------------------- 145 (238)
T ss_pred ----cceeccccccccceeEEecc-----------CCceeeeccccCceeeeeccccC----------------------
Confidence 11445555666667777665 79999999998888877766652
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEe--cCCCcEEEccC
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTG--NRHGLVHVWSN 485 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg--s~DgtVklWd~ 485 (485)
+.+..+..+--+..|+++ |.|.++|.|+.
T Consensus 146 ---------------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 ---------------ESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ---------------CCcceeEEecCCceEEeeccccchhhhhcch
Confidence 255556666677888888 89999999973
No 364
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.66 E-value=2.3 Score=50.73 Aligned_cols=253 Identities=10% Similarity=0.117 Sum_probs=129.5
Q ss_pred cceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE-
Q 011452 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI- 172 (485)
Q Consensus 96 s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l- 172 (485)
..|.++.|- ..-|..+..+|.+-+=|.++...-+ -|.-++.|-+..+|||.+.++.+.. . +++-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg~vd~GI~aaswS~Dee~l~liT~----~------~tll~m 136 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VGNVDNGISAASWSPDEELLALITG----R------QTLLFM 136 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee--eeeccCceEEEeecCCCcEEEEEeC----C------cEEEEE
Confidence 357777776 4445556667777777888766443 3446778999999999999988652 1 12221
Q ss_pred ---eEeccCCcCcccceeee----c---cccCce-EEEEeCCCCeE-----EEEeeCCCcEEEeecCCCeEEEEEcCCcE
Q 011452 173 ---EYIRRGKPDAGFALFES----E---SLKWPG-FVEFDDVNGKV-----LTYSAQDSIYKVFDLKNYTMLYSISDKNV 236 (485)
Q Consensus 173 ---w~i~~G~~~~~~~lf~~----~---~~~~~~-~V~Fs~pnG~~-----Las~s~D~tiKlWdl~~g~~l~tl~~~~V 236 (485)
|++-.-+ +|+.. . ..+|-. .-.|.-..|+. +.....++.+ ++ ++.=
T Consensus 137 T~~f~~i~E~-----~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~---~~----------~~~~ 198 (1265)
T KOG1920|consen 137 TKDFEPIAEK-----PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI---EQ----------DDHK 198 (1265)
T ss_pred eccccchhcc-----ccccccccccccceecccccceeeecchhhhcccccccccccccch---hh----------ccCC
Confidence 2221111 12111 0 111111 11232111111 0000001111 00 0112
Q ss_pred EEEEEcCCc-eEEEEEc-CCCC-eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe---CCCcEEEEECC--
Q 011452 237 QEIKISPGI-MLLIFTK-ASGH-VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVR-- 308 (485)
Q Consensus 237 ~~VafSpg~-~ll~sss-~~~D-~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s---~D~tIkIWDv~-- 308 (485)
.+|.+-.+| ..+++.- ...+ ..||+||.+ |.+-.+-.--.+--..++|- |.|..+++-+ .|..|.++.-.
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCc
Confidence 235555444 4444211 1122 799999987 55433222111122367775 5788888743 67789988733
Q ss_pred -CCeeEEecccCCCceEEEEEcCCCcEEEE---Ee-CCcEEEEeCC---CcEEEEee--cC--CCCCCCCCeeEEEEC-C
Q 011452 309 -NFELTEVSRTEFMTPSAFIFLYENQLFLT---FR-NRTVAVWNFR---GELVTSFE--DH--LLWHPDCNTNNIYIT-S 375 (485)
Q Consensus 309 -tg~~~~~l~gh~~~v~avaFspdg~llaS---~s-D~TIklWd~~---G~ll~tl~--gH--~~~~~~~~v~svafS-p 375 (485)
.|+..-...-....+..++|+-++.+||. .. ...|++|-+. .-+.+.+. +- ..|||.. -..+.+. -
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~-~~~L~v~~~ 355 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVT-EKTLHVLRE 355 (1265)
T ss_pred cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCC-ceeEEEEec
Confidence 33332222223334899999999999997 44 5569999873 33444332 22 3366643 2444444 4
Q ss_pred CCCEEE
Q 011452 376 DQDLII 381 (485)
Q Consensus 376 DG~~La 381 (485)
+|++++
T Consensus 356 sG~~~v 361 (1265)
T KOG1920|consen 356 SGQRLV 361 (1265)
T ss_pred CCcEEE
Confidence 666654
No 365
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.26 Score=56.17 Aligned_cols=132 Identities=9% Similarity=-0.054 Sum_probs=92.1
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC-----
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE----- 331 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd----- 331 (485)
+-|.+.+. .|.. ++.-.|... .-.|++++++|.||+|.|-.+-+.+...+.. -.-.+.+|+++||
T Consensus 59 g~v~~~~~-~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~ 128 (846)
T KOG2066|consen 59 GAVYLTTC-QGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQ 128 (846)
T ss_pred ceEEEEec-CCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhh
Confidence 56666664 4554 333333222 2458999999999999999999888766653 2347899999999
Q ss_pred CcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 332 NQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 332 g~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
.+.+++|+ -| +-|..-+ |..... ..|..- +.|.+|++ .|.+||=++. --||++|+.++
T Consensus 129 sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~e---G~I~~i~W--~g~lIAWand------------~Gv~vyd~~~~ 189 (846)
T KOG2066|consen 129 SKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGE---GPIHSIKW--RGNLIAWAND------------DGVKVYDTPTR 189 (846)
T ss_pred hhheeecCcce-EEEehhhhhcCccce-eeecCc---cceEEEEe--cCcEEEEecC------------CCcEEEecccc
Confidence 66788988 55 7677654 443332 223321 34888888 5789998864 44899999999
Q ss_pred eEEEEecCC
Q 011452 409 KCLAKIRAS 417 (485)
Q Consensus 409 k~l~tl~gH 417 (485)
+.+..++..
T Consensus 190 ~~l~~i~~p 198 (846)
T KOG2066|consen 190 QRLTNIPPP 198 (846)
T ss_pred ceeeccCCC
Confidence 998888653
No 366
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.60 E-value=3.1 Score=42.36 Aligned_cols=193 Identities=12% Similarity=0.116 Sum_probs=117.8
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
.+.+...-+......+.|..+|..+-|.+.+| . -.++..++.+|+.....+|=. ..++ ..++.- +++
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG--~------S~l~~~d~~tg~~~~~~~l~~-~~Fg--EGit~~--~d~ 101 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYG--Q------SSLRKVDLETGKVLQSVPLPP-RYFG--EGITIL--GDK 101 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTT--E------EEEEEEETTTSSEEEEEE-TT-T--E--EEEEEE--TTE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCC--c------EEEEEEECCCCcEEEEEECCc-cccc--eeEEEE--CCE
Confidence 34455433445678899989999888877665 1 356677888888632111000 0111 124442 455
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC-----Ccce
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL-----LHRN 280 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~-----~~~~ 280 (485)
+..--=.+++.-+||.++-+.+.+++ ...=|.++ ++|..|+.|.+ ...|..+|.++-+..+++.-. ....
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt-~dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT-SDGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE-ECSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEecCCcceEEE-cCCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCc
Confidence 55545578999999999999988886 34566777 66777776633 369999999999888877621 1123
Q ss_pred eEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecc------------cC---CCceEEEEEcCC-CcEEEEEe
Q 011452 281 KKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSR------------TE---FMTPSAFIFLYE-NQLFLTFR 339 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~------------gh---~~~v~avaFspd-g~llaS~s 339 (485)
.++.++ ++++.+-- ....|-..|..||+....+. .+ .+-.+.+|+.|+ +++++||.
T Consensus 178 NELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 178 NELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 466665 57777764 44566667999999877641 11 356899999665 55667764
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.46 E-value=0.4 Score=55.40 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=91.9
Q ss_pred CeeEEEEecCCCeEEEEeecCCcc-eeEEEE----EecCCCEEEEEeCCCcEEEEECCCC-e-eEEecccC----CCceE
Q 011452 256 HVPLKILSIEDGTVLKSFNHLLHR-NKKVDF----IEQFNEKLLVKQENENLQILDVRNF-E-LTEVSRTE----FMTPS 324 (485)
Q Consensus 256 D~tIklWdi~tG~~L~tl~~~~~~-~~~V~f----~~~~~~~lls~s~D~tIkIWDv~tg-~-~~~~l~gh----~~~v~ 324 (485)
...|.-.||++|+++...+-|-.. +..++- ....++....|=.++.|-.||.+-. . ++. ..+| .....
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-ccccccccCCCce
Confidence 467888999999999998854322 333321 1112466777778999999999853 2 332 1222 33567
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCCCcE-EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFRGEL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~G~l-l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
+++-+-+|.+ |.|+ +|-|||+|--|+- .+.|.|=..+ |..|..|.||++|+..|. ..+-|
T Consensus 582 ~~aTt~~G~i-avgs~~G~IRLyd~~g~~AKT~lp~lG~p-----I~~iDvt~DGkwilaTc~------------tyLlL 643 (794)
T PF08553_consen 582 CFATTEDGYI-AVGSNKGDIRLYDRLGKRAKTALPGLGDP-----IIGIDVTADGKWILATCK------------TYLLL 643 (794)
T ss_pred EEEecCCceE-EEEeCCCcEEeecccchhhhhcCCCCCCC-----eeEEEecCCCcEEEEeec------------ceEEE
Confidence 7888888875 5555 9999999975653 3445554445 899999999999999984 77888
Q ss_pred EeCC
Q 011452 403 SNIL 406 (485)
Q Consensus 403 Wdl~ 406 (485)
.+..
T Consensus 644 i~t~ 647 (794)
T PF08553_consen 644 IDTL 647 (794)
T ss_pred EEEe
Confidence 8753
No 368
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.04 Score=58.34 Aligned_cols=126 Identities=10% Similarity=0.032 Sum_probs=85.2
Q ss_pred EEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEE
Q 011452 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 259 IklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~ 338 (485)
++..+..+-+.+.-+.+|...++.++|++...+.+..++-+.+|+|-|+++..+......| ..+|+.+|--|...++-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 4445444444455555666778899998543446777899999999999999999988888 689999998888888877
Q ss_pred e--CCcEEEEeCC-C-cEEEEeecCCCCCCCCC---eeEEEECCCCCEEEEEec
Q 011452 339 R--NRTVAVWNFR-G-ELVTSFEDHLLWHPDCN---TNNIYITSDQDLIISYCK 385 (485)
Q Consensus 339 s--D~TIklWd~~-G-~ll~tl~gH~~~~~~~~---v~svafSpDG~~LaS~s~ 385 (485)
+ +|.|-|+|++ - ..+..|.+...-+|-+. +..-.+.+-|-+|+..+.
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt 307 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT 307 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh
Confidence 7 9999999995 2 24444444221111100 111244556667766554
No 369
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.034 Score=58.89 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=63.9
Q ss_pred eecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCC
Q 011452 356 FEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSS 434 (485)
Q Consensus 356 l~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~ 434 (485)
+.+|... |++++|||... +|..++. +++|||-|+.|-.++.....|.
T Consensus 189 lp~~g~~-----IrdlafSp~~~GLl~~asl-----------~nkiki~dlet~~~vssy~a~~---------------- 236 (463)
T KOG1645|consen 189 LPGEGSF-----IRDLAFSPFNEGLLGLASL-----------GNKIKIMDLETSCVVSSYIAYN---------------- 236 (463)
T ss_pred ccccchh-----hhhhccCccccceeeeecc-----------CceEEEEecccceeeeheeccC----------------
Confidence 4455555 89999999998 7888876 7999999999999999998875
Q ss_pred CCccccccccccccccchhcccCCeEEEEEcCCC-CEEEEecCCCcEEEccC
Q 011452 435 GSCNVKKHSHASRIRSTVAEALEDITALFYDEDR-NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg-~~LaSgs~DgtVklWd~ 485 (485)
.+|+.+|+-|. +.||.|-..|.|-|+|.
T Consensus 237 -----------------------~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 237 -----------------------QIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred -----------------------CceeeeeccCCcceeEEeccCceEEEEEc
Confidence 78999998764 67999999999999873
No 370
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.19 E-value=1.4 Score=46.11 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=49.6
Q ss_pred cEEEEECCC--Ce--eEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCCC------c---EEEEeecCCC-CCCCC
Q 011452 301 NLQILDVRN--FE--LTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG------E---LVTSFEDHLL-WHPDC 366 (485)
Q Consensus 301 tIkIWDv~t--g~--~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~G------~---ll~tl~gH~~-~~~~~ 366 (485)
.|.+++-.+ |. ..+++......+..++|.++| ++++..+...++.|.+| + ++..|..... .| -
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~--~ 124 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHH--H 124 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccc--c
Confidence 677776543 33 234444445578999999999 88775566555667643 2 2333433200 01 1
Q ss_pred CeeEEEECCCCCEEEEEe
Q 011452 367 NTNNIYITSDQDLIISYC 384 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s 384 (485)
..+.++|.|||.+.++-+
T Consensus 125 ~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred cccCceECCCCCEEEecc
Confidence 167899999999988765
No 371
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.13 E-value=0.43 Score=49.45 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=43.9
Q ss_pred ceEEEEEcCCCcEEEEEeCCcEEEEeCCCcE---EEEeecCCCCCCCCCeeEEEECCC----CCEEEEEec
Q 011452 322 TPSAFIFLYENQLFLTFRNRTVAVWNFRGEL---VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCK 385 (485)
Q Consensus 322 ~v~avaFspdg~llaS~sD~TIklWd~~G~l---l~tl~gH~~~~~~~~v~svafSpD----G~~LaS~s~ 385 (485)
.+++++|.|||++|++-..|+|.+.+.+|.. +..+..-. .........|+|.|+ +.+-++++.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~-~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVF-ADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTB-TSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceeccccccc-ccccCCcccceeccccCCCCEEEEEEEc
Confidence 6899999999999998779999999966665 44442111 111233789999995 888888874
No 372
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.93 E-value=7.7 Score=43.03 Aligned_cols=193 Identities=15% Similarity=0.108 Sum_probs=112.1
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEcC---CcEE----------EEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQ----------EIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~~---~~V~----------~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
+|.+.+ ++.++.|.=.|+++|+++-+..- ..+. .+++.. ++++.+ ..|..|.-.|.+||+++
T Consensus 69 ~g~vyv-~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-~~v~v~---t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYV-TTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD-GKVFFG---TLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEE-ECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC-CEEEEE---cCCCEEEEEECCCCCEE
Confidence 565555 34466777778888888766531 1121 234443 444443 23468888899999999
Q ss_pred EEeecCCcc-eeEEEEEe-cCCCEEEEEe------CCCcEEEEECCCCeeEEeccc---C--------------------
Q 011452 271 KSFNHLLHR-NKKVDFIE-QFNEKLLVKQ------ENENLQILDVRNFELTEVSRT---E-------------------- 319 (485)
Q Consensus 271 ~tl~~~~~~-~~~V~f~~-~~~~~lls~s------~D~tIkIWDv~tg~~~~~l~g---h-------------------- 319 (485)
-.+...... -..+.-.+ ..+++++++. .++.|.-.|++||+.+-.... .
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 876521111 01111100 1256777763 278999999999997654311 1
Q ss_pred --------CCceEE-EEEcCCCcEEEEEe-C-----C-----------cEEEEeCC-CcEEEEee--cCCCCCCCCCeeE
Q 011452 320 --------FMTPSA-FIFLYENQLFLTFR-N-----R-----------TVAVWNFR-GELVTSFE--DHLLWHPDCNTNN 370 (485)
Q Consensus 320 --------~~~v~a-vaFspdg~llaS~s-D-----~-----------TIklWd~~-G~ll~tl~--gH~~~~~~~~v~s 370 (485)
...+|. .++-|+..++--+. + + .|--=|.+ ||++-.|. -|..|+.+..-..
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 112222 24445444443332 2 1 33344564 88865554 5777876643233
Q ss_pred EEEC--CCCC---EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 371 IYIT--SDQD---LIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 371 vafS--pDG~---~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
+-+. .||+ .++-+.+ +|-+-+-|-.|||.+.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADR-----------NGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEEEeccCCcEEEEEEEeCC-----------CceEEEEECCCCceec
Confidence 3343 5887 7778877 7999999999999873
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.80 E-value=1.8 Score=50.29 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=85.4
Q ss_pred EEEEE-eCCCcEEEEECCCCeeEEecccCCCc-eEEEEEcC--------CCcEEEEEeCCcEEEEeCC--Cc-EEEEeec
Q 011452 292 KLLVK-QENENLQILDVRNFELTEVSRTEFMT-PSAFIFLY--------ENQLFLTFRNRTVAVWNFR--GE-LVTSFED 358 (485)
Q Consensus 292 ~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~-v~avaFsp--------dg~llaS~sD~TIklWd~~--G~-ll~tl~g 358 (485)
.|+.. ...+.|.--|+.+|+.++...-|.+. |..+ -| ..+.|+--+++.+-.||.+ |. ++. -+.
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~~ 571 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQS 571 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceee-ccc
Confidence 33443 46788999999999999998877765 4444 34 3456766678888999986 53 443 234
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE-ecCCCCCCCCcccccCCCCCCCCc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK-IRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t-l~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
|+- .......++|-+.+|. ||-||. +|-|||+| ..|+--+| |.|-.
T Consensus 572 k~Y-~~~~~Fs~~aTt~~G~-iavgs~-----------~G~IRLyd-~~g~~AKT~lp~lG------------------- 618 (794)
T PF08553_consen 572 KQY-SSKNNFSCFATTEDGY-IAVGSN-----------KGDIRLYD-RLGKRAKTALPGLG------------------- 618 (794)
T ss_pred ccc-ccCCCceEEEecCCce-EEEEeC-----------CCcEEeec-ccchhhhhcCCCCC-------------------
Confidence 432 2233367888888886 455665 79999999 44543222 22211
Q ss_pred cccccccccccccchhcccCCeEEEEEcCCCCEEEEec
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN 475 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs 475 (485)
.+|..|..+.||++|+...
T Consensus 619 -------------------~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 619 -------------------DPIIGIDVTADGKWILATC 637 (794)
T ss_pred -------------------CCeeEEEecCCCcEEEEee
Confidence 2888999999999865443
No 374
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.79 E-value=4.9 Score=40.08 Aligned_cols=169 Identities=14% Similarity=0.097 Sum_probs=94.5
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
.+.+.+.|+||+.+|.++. .++ ...|+-.+.|... ..+.+...+. .-.|+ ++|.+.+....+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~--~~~-------~~~L~~~~~~~~~--~~~~~g~~l~---~PS~d-~~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE--GDG-------GRSLYVGPAGGPV--RPVLTGGSLT---RPSWD-PDGWVWTVDDGSGGV 89 (253)
T ss_pred cccceEECCCCCeEEEEEE--cCC-------CCEEEEEcCCCcc--eeeccCCccc---ccccc-CCCCEEEEEcCCCce
Confidence 5899999999999998772 222 2333333333321 1122222233 44676 689998888888888
Q ss_pred EEee-cCCCeEE-EEE--cC-C-cEEEEEEcCCceEEEEEcCC-CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 218 KVFD-LKNYTML-YSI--SD-K-NVQEIKISPGIMLLIFTKAS-GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 218 KlWd-l~~g~~l-~tl--~~-~-~V~~VafSpg~~ll~sss~~-~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
+++. ..+++.. ..+ .. . .|.++++||+|..++.-..+ .+..|.+ +-+..
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v----------------------a~V~r-- 145 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV----------------------AGVVR-- 145 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE----------------------EEEEe--
Confidence 8884 4455432 222 21 2 79999999876665442211 1111111 00101
Q ss_pred CEEEEEeCCC-cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEE-EeCCCcEEEEe
Q 011452 291 EKLLVKQENE-NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAV-WNFRGELVTSF 356 (485)
Q Consensus 291 ~~lls~s~D~-tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIkl-Wd~~G~ll~tl 356 (485)
..++ ... -...++........+.+++|.+++.+++-+. +..+.. ....|-....+
T Consensus 146 ------~~~g~~~~-----l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 146 ------DGDGVPRR-----LTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred ------CCCCCcce-----eccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCccccc
Confidence 1222 111 1233344444556889999999999988887 554544 55566555554
No 375
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.76 E-value=1.5 Score=45.98 Aligned_cols=141 Identities=14% Similarity=0.057 Sum_probs=79.2
Q ss_pred cEEEEEEcCCceEEEEEcC---------CCC-eeEEEEecC--CCeE--EEEeecCCcceeEEEEEecCCCEEEEEeCCC
Q 011452 235 NVQEIKISPGIMLLIFTKA---------SGH-VPLKILSIE--DGTV--LKSFNHLLHRNKKVDFIEQFNEKLLVKQENE 300 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~---------~~D-~tIklWdi~--tG~~--L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~ 300 (485)
....|+|.+.+.+.++... ... ..|.+++-. +|+. ...|...+.....++|. + ++ |.+++.+.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~-~-~G-lyV~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA-V-GG-VYVATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe-c-CC-EEEeCCCe
Confidence 3456777776666555321 001 156566543 3553 24454434555678875 3 34 77776666
Q ss_pred cEEEEECCCC-----e---eEEeccc----CCCceEEEEEcCCCcEEEEEeC--------------------CcEEEEeC
Q 011452 301 NLQILDVRNF-----E---LTEVSRT----EFMTPSAFIFLYENQLFLTFRN--------------------RTVAVWNF 348 (485)
Q Consensus 301 tIkIWDv~tg-----~---~~~~l~g----h~~~v~avaFspdg~llaS~sD--------------------~TIklWd~ 348 (485)
-.++.|.... + ++..+.. +...+..++|.|||.+.++-++ +.|--+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 5556665421 2 2222322 2456889999999999886652 22333344
Q ss_pred CCcEEEEe-ecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 349 RGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 349 ~G~ll~tl-~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
+|..+..+ .|+. +.+.++|+|+|+++++-.
T Consensus 172 dg~~~e~~a~G~r------np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQ------NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcC------CCccceECCCCCEEEEcc
Confidence 44433333 2332 257899999999988744
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.66 E-value=5.8 Score=40.35 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCEEEEEeCCCcEEEE--ECCCCeeEEeccc-CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 290 NEKLLVKQENENLQIL--DVRNFELTEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 290 ~~~lls~s~D~tIkIW--Dv~tg~~~~~l~g-h~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
+.+++++-.-+.|.++ +-+..++...-+. ...++.++.|.+|++.++.+. +|.|.++...
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 4577777666666655 3332333333222 345788999997777777777 9999988753
No 377
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.64 E-value=0.013 Score=67.03 Aligned_cols=100 Identities=12% Similarity=0.159 Sum_probs=67.9
Q ss_pred eCCCcEEEEECCCCeeEEecccCCCceEEEEE-----------cCCCcEEEEEe-CCcEEEEeC--CCc----EEEEeec
Q 011452 297 QENENLQILDVRNFELTEVSRTEFMTPSAFIF-----------LYENQLFLTFR-NRTVAVWNF--RGE----LVTSFED 358 (485)
Q Consensus 297 s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF-----------spdg~llaS~s-D~TIklWd~--~G~----ll~tl~g 358 (485)
-.|++|+|.++.+.+. ..+++|..++..++| ||||+.||.++ ||.++.|.. .|+ |+...+-
T Consensus 202 ~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred cCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 3789999998876544 566778877776665 99999999999 999999997 365 5556666
Q ss_pred CCCCCCCCCeeEEEECCC---------CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 359 HLLWHPDCNTNNIYITSD---------QDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 359 H~~~~~~~~v~svafSpD---------G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
|... |. |-.+ |..+ =+++|++++. ..-+|+|.-..-+|+
T Consensus 281 hd~~-p~--vC~l-c~~~~~~~v~i~~w~~~Itttd~----------nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 281 HDKH-PR--VCWL-CHKQEILVVSIGKWVLRITTTDV----------NREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCC-Cc--eeee-eccccccCCccceeEEEEecccC----------CcceeEeeccchhhh
Confidence 6521 11 2222 2111 1456666541 356899987777787
No 378
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=4.3 Score=47.10 Aligned_cols=199 Identities=10% Similarity=0.029 Sum_probs=116.7
Q ss_pred EEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEcC--Cc-EEEEEEcCCceEEEEEcCCCC---eeEEEEecCCC----
Q 011452 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KN-VQEIKISPGIMLLIFTKASGH---VPLKILSIEDG---- 267 (485)
Q Consensus 199 ~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~~--~~-V~~VafSpg~~ll~sss~~~D---~tIklWdi~tG---- 267 (485)
.++ ++|..+|-|+.||-| |-+..+- .++.+.. +. |+-+..-.+.-+|.+-..|.. ..|||||++.-
T Consensus 30 c~~-s~~~~vvigt~~G~V--~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCS-SSTGSVVIGTADGRV--VILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEc-CCCceEEEeeccccE--EEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 465 688888999988865 4444443 4455542 33 444444455455555544432 26999998732
Q ss_pred --eEEEEe--ecCCcc-----eeEEEEEecCCCEEEEEeCCCcEEEEE--CCC--CeeEEecccCCCceEEEEEcCCCcE
Q 011452 268 --TVLKSF--NHLLHR-----NKKVDFIEQFNEKLLVKQENENLQILD--VRN--FELTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 268 --~~L~tl--~~~~~~-----~~~V~f~~~~~~~lls~s~D~tIkIWD--v~t--g~~~~~l~gh~~~v~avaFspdg~l 334 (485)
+|+.+. -.|..+ ...++.+ .+-..+++|=.||.|-+.- +.. |............|+.++|..|++.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 344211 122122 2345544 4445555566889988873 322 2222222234568999999999998
Q ss_pred EEEEe-CCcEEEEeCCCcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 335 FLTFR-NRTVAVWNFRGEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 335 laS~s-D~TIklWd~~G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
++=.. -..|.++.++|+- +.++..|... ++...|++--.-++.++ ..-|-++|..--+.-
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~-----lnCss~~~~t~qfIca~------------~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGIS-----LNCSSFSDGTYQFICAG------------SEFLYFYDSDGRGPC 248 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCcc-----ceeeecCCCCccEEEec------------CceEEEEcCCCccee
Confidence 43233 6679999998665 6677777655 77788877544344444 256788876543333
Q ss_pred EEec-CCC
Q 011452 412 AKIR-ASN 418 (485)
Q Consensus 412 ~tl~-gH~ 418 (485)
.++. ||.
T Consensus 249 faf~~g~k 256 (933)
T KOG2114|consen 249 FAFEVGEK 256 (933)
T ss_pred eeecCCCe
Confidence 4555 665
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.48 E-value=2.1 Score=44.26 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=98.3
Q ss_pred EEEeCCCCeEEE-EeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 198 VEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 198 V~Fs~pnG~~La-s~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
-+|...||++=+ .-+. .|+++..+. ...-..|+|+|-- .-++.+..-+ .-..++|..+++.+.++.
T Consensus 40 saf~~~dgs~g~a~~~e----------aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPG-tf~~vfD~~~~~~pv~~~ 108 (366)
T COG3490 40 SAFDARDGSFGAATLSE----------AGKIVFATALPARGHGIAFHPALPRAVAFARRPG-TFAMVFDPNGAQEPVTLV 108 (366)
T ss_pred eeeeccCCceeEEEEcc----------CCceeeeeecccccCCeecCCCCcceEEEEecCC-ceEEEECCCCCcCcEEEe
Confidence 367677787633 3333 455554432 2223345666522 2222233221 345577888888888775
Q ss_pred cCCccee--EEEEEecCCCEEEEEeCC-----CcEEEEECCCCe-eEEecccCCCceEEEEEcCCCcEEEEEeCCcEE--
Q 011452 275 HLLHRNK--KVDFIEQFNEKLLVKQEN-----ENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVA-- 344 (485)
Q Consensus 275 ~~~~~~~--~V~f~~~~~~~lls~s~D-----~tIkIWDv~tg~-~~~~l~gh~~~v~avaFspdg~llaS~sD~TIk-- 344 (485)
.-.++-+ -=.|+ |||..|-++-.| +-|=|||.+.+- .+-.+.+|...+-.+.+.+||++++-+. |-|+
T Consensus 109 s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan-GGIeth 186 (366)
T COG3490 109 SQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGIETH 186 (366)
T ss_pred cccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC-Cceecc
Confidence 3222211 12354 778777776433 789999999653 3445678888889999999999998664 3233
Q ss_pred ------------------EEe-CCCcEEEEeecCCCC--CCCCCeeEEEECCCCCEEEE
Q 011452 345 ------------------VWN-FRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIIS 382 (485)
Q Consensus 345 ------------------lWd-~~G~ll~tl~gH~~~--~~~~~v~svafSpDG~~LaS 382 (485)
+-| .+|+++ +.|.+. ...-.|+-+++-+||..++-
T Consensus 187 pdfgR~~lNldsMePSlvlld~atG~li---ekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 187 PDFGRTELNLDSMEPSLVLLDAATGNLI---EKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred cccCccccchhhcCccEEEEeccccchh---hhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 334 245543 334332 11122899999999987664
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.27 E-value=0.18 Score=59.10 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=51.0
Q ss_pred EEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 335 FLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 335 laS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
++-++ -|.|-+-|.+|.+-. -|.+-+....|.+++|+.||.+++-|-. +|-|.+||+.+++.++.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~---~~~ne~v~~~Vtsvafn~dg~~l~~G~~-----------~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGP---LHQNERVQGPVTSVAFNQDGSLLLAGLG-----------DGHVTVWDMHRAKILKV 167 (1206)
T ss_pred EEEEcCchhhhhhhhhcccch---hhcCCccCCcceeeEecCCCceeccccC-----------CCcEEEEEccCCcceee
Confidence 44444 455556666555322 1333333345999999999999998875 79999999999999999
Q ss_pred ecCCCC
Q 011452 414 IRASNG 419 (485)
Q Consensus 414 l~gH~~ 419 (485)
|..|..
T Consensus 168 i~e~~a 173 (1206)
T KOG2079|consen 168 ITEHGA 173 (1206)
T ss_pred eeecCC
Confidence 988863
No 381
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.94 E-value=3.2 Score=45.38 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=59.6
Q ss_pred CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe--EEEEeec-----CCcceeEEEEEecC-----CCEEEEEe-C--
Q 011452 234 KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT--VLKSFNH-----LLHRNKKVDFIEQF-----NEKLLVKQ-E-- 298 (485)
Q Consensus 234 ~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~--~L~tl~~-----~~~~~~~V~f~~~~-----~~~lls~s-~-- 298 (485)
..-++|+|.|++.++++.... +.|++++-.++. .+..+.. -+.....|+|.|.+ +.+|-+.. .
T Consensus 30 ~~Pw~maflPDG~llVtER~~--G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERAT--GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEEcCCCeEEEEEecC--CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 356899999988888875422 689999866553 2222221 13445689987544 23444431 1
Q ss_pred -C----CcEEE--EECCC--C------eeEEecc-cCCCceEEEEEcCCCcEEEEEeCC
Q 011452 299 -N----ENLQI--LDVRN--F------ELTEVSR-TEFMTPSAFIFLYENQLFLTFRNR 341 (485)
Q Consensus 299 -D----~tIkI--WDv~t--g------~~~~~l~-gh~~~v~avaFspdg~llaS~sD~ 341 (485)
+ ..-+| |.+.. . .++..+. +..+.-..++|.|||.|+++.+|+
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1 12344 44431 1 1122121 111234678899999999988855
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.75 E-value=5.7 Score=41.20 Aligned_cols=183 Identities=16% Similarity=0.244 Sum_probs=111.0
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
.|-++.|||+-++|.++-. . ...-+|=-.+|++....+|-. +.-+..+++- -+|++.++.=.|+++
T Consensus 87 nvS~LTynp~~rtLFav~n----~------p~~iVElt~~GdlirtiPL~g---~~DpE~Ieyi-g~n~fvi~dER~~~l 152 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTN----K------PAAIVELTKEGDLIRTIPLTG---FSDPETIEYI-GGNQFVIVDERDRAL 152 (316)
T ss_pred cccceeeCCCcceEEEecC----C------CceEEEEecCCceEEEecccc---cCChhHeEEe-cCCEEEEEehhcceE
Confidence 4999999999999998652 1 233344336898865555433 3456678887 589999988889999
Q ss_pred EEeecCCCeEEEE-------Ec-----CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEE---EEeecCC----
Q 011452 218 KVFDLKNYTMLYS-------IS-----DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVL---KSFNHLL---- 277 (485)
Q Consensus 218 KlWdl~~g~~l~t-------l~-----~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L---~tl~~~~---- 277 (485)
-+..+...+.+.. |. ...-..+|+.| +.++..+ ..- .|++|..++.+.-. +....++
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a-KEr--~P~~I~~~~~~~~~l~~~~~~~~~~~~~ 229 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA-KER--NPIGIFEVTQSPSSLSVHASLDPTADRD 229 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE-Ecc--CCcEEEEEecCCcccccccccCcccccc
Confidence 9998876643222 21 12467899998 5666555 333 68888877543311 1111111
Q ss_pred ---cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec---cc------CCCceEEEEEcCCCcEEEEE
Q 011452 278 ---HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS---RT------EFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 278 ---~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l---~g------h~~~v~avaFspdg~llaS~ 338 (485)
.-+.++.|.++.+..|+-+.+++-+.--|.. |+.+..+ .| .-.....|+..++|.+-+.+
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 1234666765544444457788888887776 4433332 11 12244556666666655544
No 383
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.69 E-value=7.4 Score=40.19 Aligned_cols=66 Identities=6% Similarity=0.209 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCcEEEEEe-C------CcEEEEeCCCcEEEEee---cC-------CCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 322 TPSAFIFLYENQLFLTFR-N------RTVAVWNFRGELVTSFE---DH-------LLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-D------~TIklWd~~G~ll~tl~---gH-------~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
...++++.++|.+++|+- + ..|.-.+.+|+.+..+. .. ..+..+....+++++|||+.|..+.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 566899999999999998 8 88888888898877662 22 3345566689999999999888887
Q ss_pred cCC
Q 011452 385 KAD 387 (485)
Q Consensus 385 ~d~ 387 (485)
..+
T Consensus 166 E~~ 168 (326)
T PF13449_consen 166 ESP 168 (326)
T ss_pred Ccc
Confidence 655
No 384
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=2 Score=49.69 Aligned_cols=106 Identities=8% Similarity=0.197 Sum_probs=69.8
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCC-cEEEEEe-CC-----cEEEEeCC----Cc---E
Q 011452 287 EQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTFR-NR-----TVAVWNFR----GE---L 352 (485)
Q Consensus 287 ~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg-~llaS~s-D~-----TIklWd~~----G~---l 352 (485)
.+.++.++.|+.||.|-+.|-. -+.++-+..+...+-.+...-++ .+|+|-. |. +|||||++ ++ |
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred cCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 3557888889999988888754 44446666666554344444455 4666666 44 69999983 22 4
Q ss_pred E--EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 353 V--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 353 l--~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
+ ..+..|..+..-..+..|++|.|=+.||.|-. +|+|-...
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~-----------nG~V~~~~ 153 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFT-----------NGLVICYK 153 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEec-----------CcEEEEEc
Confidence 4 24445554422234788999999999999876 68887763
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=0.36 Score=56.62 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=64.8
Q ss_pred CEEEEEeCCCcEEEEECCCCee-EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCC
Q 011452 291 EKLLVKQENENLQILDVRNFEL-TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 367 (485)
Q Consensus 291 ~~lls~s~D~tIkIWDv~tg~~-~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~ 367 (485)
.-+++++.-+.+-+-|+.+..+ ...-..-+.+|.+++|+.||.+++-|= +|.|++||.+ ++.++-++.|..++..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~-- 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG-- 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce--
Confidence 3455566666666666553221 011112346899999999999999887 9999999996 8999999988866433
Q ss_pred eeEEEECCCCCEEEEEec
Q 011452 368 TNNIYITSDQDLIISYCK 385 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~ 385 (485)
|--+-.+.++..+.++..
T Consensus 178 vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred EEEEEEeCCCcEEEEccC
Confidence 555666677777777643
No 386
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.24 E-value=5.4 Score=35.60 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=60.7
Q ss_pred cEEEEEEcC----C-ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011452 235 NVQEIKISP----G-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 235 ~V~~VafSp----g-~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t 309 (485)
+|.++++++ | ..|+++ + .|..||+++ ..+++..++.. +.+..+.-+ .+++++.+-++|||-+++-..
T Consensus 1 ~V~al~~~d~d~dg~~eLlvG-s--~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVG-S--DDFEIRVFK--GDEIVAEITET-DKVTSLCSL--GGGRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred CeeEEEEEecCCCCcceEEEe-c--CCcEEEEEe--CCcEEEEEecc-cceEEEEEc--CCCEEEEEecCCEEEEEeCcc
Confidence 477888874 2 345554 3 458999998 44688888743 455555543 357888888999998887643
Q ss_pred CeeEEecccCCCceEEEEEcC-CC---cEEEEEe-CCcEE
Q 011452 310 FELTEVSRTEFMTPSAFIFLY-EN---QLFLTFR-NRTVA 344 (485)
Q Consensus 310 g~~~~~l~gh~~~v~avaFsp-dg---~llaS~s-D~TIk 344 (485)
..-.-- -...+.++++.+ +| .-|++|. +|.|.
T Consensus 73 RlWRiK---SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIK---SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeec---cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 322211 122466665433 32 2467776 88764
No 387
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.89 E-value=0.44 Score=53.66 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=80.1
Q ss_pred CCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 320 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~s-D~TIklWd~~G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
...|.--++.-.++.++-|+ -|.+-|++-.|.. +...++-.. .+..+.+|++-++.|.|+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-----~~~~~~vs~~e~lvAagt~----------- 96 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-----ITCVRSVSSVEYLVAAGTA----------- 96 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccc-----eEEEEEecchhHhhhhhcC-----------
Confidence 34555556788888999898 8999999997443 334444322 2677889999999888875
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 397 AGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 397 DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
.|-|-+.-+..++ . ++..|...|++. | + ..|+++.||+|+..+|+|..
T Consensus 97 ~g~V~v~ql~~~~-----p-------------~~~~~~t~~d~~-~--~-----------~rVTal~Ws~~~~k~ysGD~ 144 (726)
T KOG3621|consen 97 SGRVSVFQLNKEL-----P-------------RDLDYVTPCDKS-H--K-----------CRVTALEWSKNGMKLYSGDS 144 (726)
T ss_pred CceEEeehhhccC-----C-------------Ccceeecccccc-C--C-----------ceEEEEEecccccEEeecCC
Confidence 4777666554311 1 122344445443 2 1 28999999999999999999
Q ss_pred CCcEEE
Q 011452 477 HGLVHV 482 (485)
Q Consensus 477 DgtVkl 482 (485)
-|+|.+
T Consensus 145 ~Gkv~~ 150 (726)
T KOG3621|consen 145 QGKVVL 150 (726)
T ss_pred CceEEE
Confidence 999975
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.70 E-value=0.32 Score=48.40 Aligned_cols=104 Identities=9% Similarity=0.048 Sum_probs=63.9
Q ss_pred CCEEEEEeCCCcEEEEECCC-CeeE-EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCC
Q 011452 290 NEKLLVKQENENLQILDVRN-FELT-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 365 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~t-g~~~-~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~ 365 (485)
+.+++++..|+.|.+|+..- |... ....+......-|.-..++.+..++. |+-|+.|+.. ++-+-.--.|..-
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~--- 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE--- 146 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC---
Confidence 46788899999999998761 1111 11112222333343455666777777 9999999997 7766655555521
Q ss_pred CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 366 ~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
. +.....+.-+..|+++- -|.|..+|.||+.
T Consensus 147 ~-~e~~ivv~sd~~i~~a~---------~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 147 S-GEELIVVGSDEFLKIAD---------TSHDRVLKKWNVE 177 (238)
T ss_pred C-cceeEEecCCceEEeec---------cccchhhhhcchh
Confidence 1 33444455556666661 1337888888875
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.31 E-value=8.8 Score=39.87 Aligned_cols=205 Identities=14% Similarity=0.117 Sum_probs=113.4
Q ss_pred EEEEeCCCCeEEEEeeCCCcE-EEeecCCCeEEEEEc---C-CcEEEEEEcCCceEEEEEcCCCC---eeEEEEecCCCe
Q 011452 197 FVEFDDVNGKVLTYSAQDSIY-KVFDLKNYTMLYSIS---D-KNVQEIKISPGIMLLIFTKASGH---VPLKILSIEDGT 268 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~ti-KlWdl~~g~~l~tl~---~-~~V~~VafSpg~~ll~sss~~~D---~tIklWdi~tG~ 268 (485)
.++|+|.-...++.+=.-+|. .|+|..+.++..++. + |.---=.|||++.+|.+...|.| +.|-|+|...+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 456665555556655555554 488988888777664 1 11111249999988877665554 678888875431
Q ss_pred -EEEEeecCCcceeEEEEEecCCCEEEEEeC------C------------CcEEEEECCCCeeEE--ecc--cCCCceEE
Q 011452 269 -VLKSFNHLLHRNKKVDFIEQFNEKLLVKQE------N------------ENLQILDVRNFELTE--VSR--TEFMTPSA 325 (485)
Q Consensus 269 -~L~tl~~~~~~~~~V~f~~~~~~~lls~s~------D------------~tIkIWDv~tg~~~~--~l~--gh~~~v~a 325 (485)
.+-.+..|.-.--.|.+. +||..+++... | -.+-+.|..+|++++ +|. -|...+.-
T Consensus 152 qrvgE~~t~GiGpHev~lm-~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLM-ADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred ceecccccCCcCcceeEEe-cCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 223444432222367765 67777777521 1 246778888888765 333 34445666
Q ss_pred EEEcCCCcEEEEEe-CC-----cEEEEeCC-CcEEEEeecCCC-C-CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 326 FIFLYENQLFLTFR-NR-----TVAVWNFR-GELVTSFEDHLL-W-HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 326 vaFspdg~llaS~s-D~-----TIklWd~~-G~ll~tl~gH~~-~-~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
++.-+||+.+.-+- -| ---|=-+. |+.++-|.--.. | --..+|-+|+.+.+-.+++-.|. .
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP----------~ 300 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP----------R 300 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC----------C
Confidence 66666665444331 11 00000111 443332221000 0 00012778999876666665554 2
Q ss_pred CCeEEEEeCCCCeEEE
Q 011452 397 AGSINISNILTGKCLA 412 (485)
Q Consensus 397 DgtIklWdl~TGk~l~ 412 (485)
-+..-+||..||..+.
T Consensus 301 GN~~vi~da~tG~vv~ 316 (366)
T COG3490 301 GNRAVIWDAATGAVVS 316 (366)
T ss_pred CCeEEEEEcCCCcEEe
Confidence 4567899999998764
No 390
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.94 E-value=0.3 Score=56.13 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=71.3
Q ss_pred EcCCCcEEEEEe-----CCcEEEEeCCCcEEEEee--cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeE
Q 011452 328 FLYENQLFLTFR-----NRTVAVWNFRGELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSI 400 (485)
Q Consensus 328 Fspdg~llaS~s-----D~TIklWd~~G~ll~tl~--gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI 400 (485)
|.|-..+||.++ .|.|-|+--+||.-+..+ -| +.++++.|.--.|++|=. -|-+
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~h--------atSLCWHpe~~vLa~gwe-----------~g~~ 83 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVH--------ATSLCWHPEEFVLAQGWE-----------MGVS 83 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEecCCCCCccccccee--------hhhhccChHHHHHhhccc-----------ccee
Confidence 444444444332 467888877788544222 22 678999999888888754 5889
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 401 NISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 401 klWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
-+|+..+.+--.....|. .+|..|.|||||..|.|+..=|.|
T Consensus 84 ~v~~~~~~e~htv~~th~--------------------------------------a~i~~l~wS~~G~~l~t~d~~g~v 125 (1416)
T KOG3617|consen 84 DVQKTNTTETHTVVETHP--------------------------------------APIQGLDWSHDGTVLMTLDNPGSV 125 (1416)
T ss_pred EEEecCCceeeeeccCCC--------------------------------------CCceeEEecCCCCeEEEcCCCcee
Confidence 999876544332333343 388999999999999999999999
Q ss_pred EEcc
Q 011452 481 HVWS 484 (485)
Q Consensus 481 klWd 484 (485)
++|+
T Consensus 126 ~lwr 129 (1416)
T KOG3617|consen 126 HLWR 129 (1416)
T ss_pred EEEE
Confidence 9996
No 391
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=91.89 E-value=5.4 Score=43.61 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=47.1
Q ss_pred EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc--EEEEeecCCCCCCCCCeeEEEECCCC-------CEEEE
Q 011452 314 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQ-------DLIIS 382 (485)
Q Consensus 314 ~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDG-------~~LaS 382 (485)
+++......+++++|.|||++|++-. .|.|++++-. +. .+..+..-..-........|+|+||= .+-++
T Consensus 23 ~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 34445567899999999999999998 6999999864 32 33333211000001237899999984 35566
Q ss_pred Eec
Q 011452 383 YCK 385 (485)
Q Consensus 383 ~s~ 385 (485)
++.
T Consensus 103 yt~ 105 (454)
T TIGR03606 103 YTY 105 (454)
T ss_pred Eec
Confidence 654
No 392
>PRK13684 Ycf48-like protein; Provisional
Probab=91.73 E-value=18 Score=37.50 Aligned_cols=147 Identities=11% Similarity=0.032 Sum_probs=84.9
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---EEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
.+..++++ |+|.+++.+..-..++.+|- .++ .+.+-....+.++++.|++.+++.+.. +.+.+=+...|+.-
T Consensus 174 ~~~~i~~~-~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~---G~~~~~s~d~G~sW 248 (334)
T PRK13684 174 VVRNLRRS-PDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG---GQIRFNDPDDLESW 248 (334)
T ss_pred eEEEEEEC-CCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecC---CEEEEccCCCCCcc
Confidence 44568887 78888877654444444432 222 222222467899999987666554332 45543234455443
Q ss_pred EEeecC----CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc---cCCCceEEEEEcCCCcEEEEEeCCcE
Q 011452 271 KSFNHL----LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR---TEFMTPSAFIFLYENQLFLTFRNRTV 343 (485)
Q Consensus 271 ~tl~~~----~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~---gh~~~v~avaFspdg~llaS~sD~TI 343 (485)
+...-. ......++|.+ ++.+.+.+.++.|. .-...|+.-+..+ +-....+.+.|..+++.++.+..|+|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~--~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRT--PGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcC--CCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 322211 12356788763 34566677777664 3445555433332 11235778889999999998888888
Q ss_pred EEEeC
Q 011452 344 AVWNF 348 (485)
Q Consensus 344 klWd~ 348 (485)
--|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 76653
No 393
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.21 E-value=17 Score=39.08 Aligned_cols=135 Identities=9% Similarity=0.016 Sum_probs=81.1
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeE---EEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe-----EEEEe
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT-----VLKSF 273 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~---l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~-----~L~tl 273 (485)
+||.+++.+..-..++-|| .|.. ..... ...+.++.|.+++.++..... +. -+|+..+|+ .+..+
T Consensus 248 ~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~---G~-l~~S~d~G~~~~~~~f~~~ 321 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG---GG-LYVSKGTGLTEEDFDFEEA 321 (398)
T ss_pred CCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCC---ce-EEEecCCCCcccccceeec
Confidence 6787777776555566665 3321 12222 457899999975555544332 33 356666665 23333
Q ss_pred ecC--CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec---ccCCCceEEEEEcCCCcEEEEEeCCcEEEE
Q 011452 274 NHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS---RTEFMTPSAFIFLYENQLFLTFRNRTVAVW 346 (485)
Q Consensus 274 ~~~--~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l---~gh~~~v~avaFspdg~llaS~sD~TIklW 346 (485)
... ...+..|.|. +++.+++.+.+|.+.... ..|+.-+.. ..-....+++.|.++++.++++.+|.|--|
T Consensus 322 ~~~~~~~~l~~v~~~--~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 322 DIKSRGFGILDVGYR--SKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ccCCCCcceEEEEEc--CCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 211 1125678875 356777888888877764 334432221 122345789999999999999988877543
No 394
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.01 E-value=21 Score=36.95 Aligned_cols=109 Identities=10% Similarity=-0.003 Sum_probs=58.4
Q ss_pred CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCC---cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 319 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 319 h~~~v~avaFspdg~llaS~s-D~TIklWd~~G---~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
-...+..+..++||+++|.++ -...+-||--. +...... . ..|.++.|+|||.+.+.+ .
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~--~-----~riq~~gf~~~~~lw~~~-~--------- 205 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS--S-----RRIQSMGFSPDGNLWMLA-R--------- 205 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--S--S-----S-EEEEEE-TTS-EEEEE-T---------
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCc--c-----ceehhceecCCCCEEEEe-C---------
Confidence 345788888899999999888 55556787522 2222221 1 238999999999987765 3
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEe
Q 011452 395 GNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG 474 (485)
Q Consensus 395 ~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg 474 (485)
.|-|+.-+. ..-..++..+.. .+...+ -.+..|+|.|+.+..|+|
T Consensus 206 --Gg~~~~s~~--~~~~~~w~~~~~------~~~~~~-------------------------~~~ld~a~~~~~~~wa~g 250 (302)
T PF14870_consen 206 --GGQIQFSDD--PDDGETWSEPII------PIKTNG-------------------------YGILDLAYRPPNEIWAVG 250 (302)
T ss_dssp --TTEEEEEE---TTEEEEE---B-------TTSS---------------------------S-EEEEEESSSS-EEEEE
T ss_pred --CcEEEEccC--CCCccccccccC------CcccCc-------------------------eeeEEEEecCCCCEEEEe
Confidence 588888872 223334443321 011111 158899999999888888
Q ss_pred cCCCc
Q 011452 475 NRHGL 479 (485)
Q Consensus 475 s~Dgt 479 (485)
+....
T Consensus 251 g~G~l 255 (302)
T PF14870_consen 251 GSGTL 255 (302)
T ss_dssp STT-E
T ss_pred CCccE
Confidence 76543
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.75 E-value=19 Score=35.89 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=81.2
Q ss_pred cEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEEEEe-ecCCcceeEEEEEecCCCEEEEEeCCCcEEEE-ECCCCe
Q 011452 235 NVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSF-NHLLHRNKKVDFIEQFNEKLLVKQENENLQIL-DVRNFE 311 (485)
Q Consensus 235 ~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L~tl-~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIW-Dv~tg~ 311 (485)
.+.+.++||++. +++....+....+.++.. |.....+ .+ .....-.|. +++..+.+...+...+++ +..+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d-~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWD-PDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--Ccccccccc-CCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999997554 444331222356666654 3333332 33 234455554 555555555566666777 344443
Q ss_pred e--EEecccCCC-ceEEEEEcCCCcEEEEEe----CCcEEEEeC----CCc------EEEEeecCCCCCCCCCeeEEEEC
Q 011452 312 L--TEVSRTEFM-TPSAFIFLYENQLFLTFR----NRTVAVWNF----RGE------LVTSFEDHLLWHPDCNTNNIYIT 374 (485)
Q Consensus 312 ~--~~~l~gh~~-~v~avaFspdg~llaS~s----D~TIklWd~----~G~------ll~tl~gH~~~~~~~~v~svafS 374 (485)
. +.+-..... .|.+|.+||||..+|--. ++.|.+=-+ .|. .+....... ..+.+++|.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~-----~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL-----SDVTDVAWS 174 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc-----Ccceeeeec
Confidence 3 333222222 899999999999988665 556655544 241 111111111 127899999
Q ss_pred CCCCEEEEEec
Q 011452 375 SDQDLIISYCK 385 (485)
Q Consensus 375 pDG~~LaS~s~ 385 (485)
+++.+++-+..
T Consensus 175 ~~~~L~V~~~~ 185 (253)
T PF10647_consen 175 DDSTLVVLGRS 185 (253)
T ss_pred CCCEEEEEeCC
Confidence 99999988765
No 396
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.19 E-value=17 Score=39.76 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=74.9
Q ss_pred CCeEEEEe---eCCCcEEEeecCCCeEEEEEcCCcEEE--EEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC-
Q 011452 204 NGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKNVQE--IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL- 277 (485)
Q Consensus 204 nG~~Las~---s~D~tiKlWdl~~g~~l~tl~~~~V~~--VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~- 277 (485)
+|-++++. ......-+-| .+|.....+....... +.+-++|.+++... ..++..|+ .|++++...--.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~----~~~~e~D~-~G~v~~~~~l~~~ 187 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG----NRLYEIDL-LGKVIWEYDLPGG 187 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB----TEEEEE-T-T--EEEEEE--TT
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC----CceEEEcC-CCCEEEeeecCCc
Confidence 44455554 2233444445 2455544443222222 55668888877654 58899998 688876654211
Q ss_pred ----cceeEEEEEecCCCEEEEEeC-------------CCcEEEEECCCCeeEEec--ccCC------------------
Q 011452 278 ----HRNKKVDFIEQFNEKLLVKQE-------------NENLQILDVRNFELTEVS--RTEF------------------ 320 (485)
Q Consensus 278 ----~~~~~V~f~~~~~~~lls~s~-------------D~tIkIWDv~tg~~~~~l--~gh~------------------ 320 (485)
|| .+.+. |.|..|+.+.+ .-.|-..| .+|+.+... ..|.
T Consensus 188 ~~~~HH--D~~~l-~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~ 263 (477)
T PF05935_consen 188 YYDFHH--DIDEL-PNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISG 263 (477)
T ss_dssp EE-B-S---EEE--TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-
T ss_pred cccccc--ccEEC-CCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccccccccccccc
Confidence 22 34443 44555554441 22355556 666655442 1221
Q ss_pred -------CceEEEEEcC-CCcEEEEEe-CCcEEEEeC-CCcEEEEeecCCCCCC
Q 011452 321 -------MTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHP 364 (485)
Q Consensus 321 -------~~v~avaFsp-dg~llaS~s-D~TIklWd~-~G~ll~tl~gH~~~~~ 364 (485)
..++++.+.| ++.+++|++ -.+|-..|. +|+++..|-.|..|..
T Consensus 264 ~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~ 317 (477)
T PF05935_consen 264 SGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNG 317 (477)
T ss_dssp SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--T
T ss_pred CCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCc
Confidence 3578999888 899999998 557777886 4999999998888744
No 397
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.35 E-value=50 Score=38.61 Aligned_cols=169 Identities=16% Similarity=0.166 Sum_probs=95.9
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcc--------eeEEEEEe---------------cCCCEEEEEeCCC
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR--------NKKVDFIE---------------QFNEKLLVKQENE 300 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~--------~~~V~f~~---------------~~~~~lls~s~D~ 300 (485)
|+++.+++ .++.|.=.|.+||+++-.+.-.... .+.|++.. ..+++++.+..|+
T Consensus 194 gg~lYv~t---~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCT---PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEEC---CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 55555542 2367888899999999887632211 12344422 1345888888999
Q ss_pred cEEEEECCCCeeEEecccCCCce----------------EEEEEcCCCcEEEEEe----------CCcEEEEeCC-CcEE
Q 011452 301 NLQILDVRNFELTEVSRTEFMTP----------------SAFIFLYENQLFLTFR----------NRTVAVWNFR-GELV 353 (485)
Q Consensus 301 tIkIWDv~tg~~~~~l~gh~~~v----------------~avaFspdg~llaS~s----------D~TIklWd~~-G~ll 353 (485)
.|--.|.+||+.+..+.. ...| .+--.-.++..++.++ ++.|+-.|.+ |+++
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999998865421 1111 1111122566665443 4789999995 9998
Q ss_pred EEeec-CC----------CCC-CCCCe-eEEEECCCCCEEEEEecCCCCC----CC-C--cCCCCeEEEEeCCCCeEEEE
Q 011452 354 TSFED-HL----------LWH-PDCNT-NNIYITSDQDLIISYCKADSDD----PL-A--EGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 354 ~tl~g-H~----------~~~-~~~~v-~svafSpDG~~LaS~s~d~~~d----~~-~--~~~DgtIklWdl~TGk~l~t 413 (485)
-.+.- +. .|. -..++ ...++.|+-.++.-....+.-| .+ . .--.++|-=-|+.|||.+..
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 87651 10 010 00111 1244555544444332211111 01 0 11246788889999999998
Q ss_pred ecC
Q 011452 414 IRA 416 (485)
Q Consensus 414 l~g 416 (485)
++-
T Consensus 430 ~Q~ 432 (764)
T TIGR03074 430 FQT 432 (764)
T ss_pred ecc
Confidence 876
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.27 E-value=5.5 Score=44.20 Aligned_cols=130 Identities=17% Similarity=0.166 Sum_probs=88.3
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEec------CCCEEEEEeCCCcEEEEECCC-Ce-eEEecccCC----CceE
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ------FNEKLLVKQENENLQILDVRN-FE-LTEVSRTEF----MTPS 324 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~------~~~~lls~s~D~tIkIWDv~t-g~-~~~~l~gh~----~~v~ 324 (485)
..|+=.|||.|+.+-+.+-+-. +.=|++.+. +.+..++|=.|..|-=||.+= ++ .+.+-.+|+ ..-.
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs 434 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS 434 (644)
T ss_pred CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence 5778889999999988875544 444555321 124555666888899999772 22 444444553 1345
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCCCcEE-EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFRGELV-TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~G~ll-~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
+++-.-+|- +|.|| +|-|||+|--|..- +.|.|-... |.-|..|.||++|+..|+ .++-|
T Consensus 435 c~aTT~sG~-IvvgS~~GdIRLYdri~~~AKTAlPgLG~~-----I~hVdvtadGKwil~Tc~------------tyLlL 496 (644)
T KOG2395|consen 435 CFATTESGY-IVVGSLKGDIRLYDRIGRRAKTALPGLGDA-----IKHVDVTADGKWILATCK------------TYLLL 496 (644)
T ss_pred eeeecCCce-EEEeecCCcEEeehhhhhhhhhcccccCCc-----eeeEEeeccCcEEEEecc------------cEEEE
Confidence 555556665 66677 99999999865543 345554444 889999999999999884 67777
Q ss_pred EeC
Q 011452 403 SNI 405 (485)
Q Consensus 403 Wdl 405 (485)
-++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 664
No 399
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=6.6 Score=45.12 Aligned_cols=144 Identities=16% Similarity=0.220 Sum_probs=86.6
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-cc---CCCceEEEEEcCCC
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RT---EFMTPSAFIFLYEN 332 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~g---h~~~v~avaFspdg 332 (485)
-.|+|.++ +|++|.++.-..+..-..-|+ +++.|+.-+.|+++.++++- |+.++.. .| ....|...-|...|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 45899997 889998775211233344443 47899999999999999987 5554441 11 11123333343344
Q ss_pred cEEEEEeCC--------cEEEEeCC---C-----cEEEEeec----------------------------CCCCCCCCCe
Q 011452 333 QLFLTFRNR--------TVAVWNFR---G-----ELVTSFED----------------------------HLLWHPDCNT 368 (485)
Q Consensus 333 ~llaS~sD~--------TIklWd~~---G-----~ll~tl~g----------------------------H~~~~~~~~v 368 (485)
-.+++.++. .-++|... + .|.+-++. |....+...+
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV 219 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence 444443333 33344320 1 11122221 2222233446
Q ss_pred eEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 369 ~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
.-+.+||+.++||-+.. +|.|.+=++...+|+-++.
T Consensus 220 ~ki~VS~n~~~laLyt~-----------~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTE-----------TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEcCCcceEEEEec-----------CCcEEEEecchhhhhhccC
Confidence 78999999999999986 6888888888888877776
No 400
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.11 E-value=1.3 Score=49.51 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=55.2
Q ss_pred CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccc
Q 011452 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHA 445 (485)
Q Consensus 366 ~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (485)
+.+.-+.++|-=++||.+.. +|-|-|--+. -+.+.++.-|.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~-----------~gelli~R~n-~qRlwtip~p~--------------------------- 61 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTE-----------KGELLIHRLN-WQRLWTIPIPG--------------------------- 61 (665)
T ss_pred cceEEEEEcCccchhheecc-----------CCcEEEEEec-cceeEeccCCC---------------------------
Confidence 34777888999999999876 5777776665 66777776554
Q ss_pred cccccchhcccCCeE-EEEEcCCCCEEEEecCCCcEEEcc
Q 011452 446 SRIRSTVAEALEDIT-ALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 446 ~~~~~~~~~~l~~V~-sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.|+ +++|.|||+.||-|=.||+|+|=|
T Consensus 62 -----------~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 62 -----------ENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred -----------CccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 1455 999999999999999999999866
No 401
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.03 E-value=3.1 Score=44.92 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=63.4
Q ss_pred EEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC---------------
Q 011452 229 YSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--------------- 291 (485)
Q Consensus 229 ~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~--------------- 291 (485)
+.|.+ ..+.+|..+|++.+++.. |+=+-|-|+|+.+|..++-.+| -+--.+.|++-..+
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~t--DslGRV~LiD~~~~~vvrmWKG--YRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVT--DSLGRVLLIDVARGIVVRMWKG--YRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEE--cCCCcEEEEECCCChhhhhhcc--CccceEEEEEeecccccccccccccCCCC
Confidence 44444 368899999988888774 4458999999999999999887 44456666532111
Q ss_pred ----EEEE-EeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEE
Q 011452 292 ----KLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF 335 (485)
Q Consensus 292 ----~lls-~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ll 335 (485)
.|++ .-.-+.|.||++++|.. |.++...++++||
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~R----------v~a~~v~k~~rLl 415 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPR----------VAAFNVGKGCRLL 415 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCE----------EEEEEeCCCcEEC
Confidence 2222 34678899999987764 4455556666553
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.94 E-value=5.2 Score=44.39 Aligned_cols=130 Identities=15% Similarity=0.099 Sum_probs=89.7
Q ss_pred EEEE-EeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc--------EEEEEeCCcEEEEeCC--Cc-EEEEeecC
Q 011452 292 KLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ--------LFLTFRNRTVAVWNFR--GE-LVTSFEDH 359 (485)
Q Consensus 292 ~lls-~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~--------llaS~sD~TIklWd~~--G~-ll~tl~gH 359 (485)
.|+. +..-.-|.=.|++.|+.++...-|.+ |+-+.|.||++ .|+--+|..|-=||.+ |+ .+.--++|
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4444 34556777789999999999887776 77777877653 4666668888899985 66 45555566
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCcccccCCCCCCCCcc
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI-RASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
+-... .+.++.+-+.+|. ||.||. +|.|||+|- .|+.-+|. +|--
T Consensus 426 qy~~k-~nFsc~aTT~sG~-IvvgS~-----------~GdIRLYdr-i~~~AKTAlPgLG-------------------- 471 (644)
T KOG2395|consen 426 QYSTK-NNFSCFATTESGY-IVVGSL-----------KGDIRLYDR-IGRRAKTALPGLG-------------------- 471 (644)
T ss_pred ccccc-cccceeeecCCce-EEEeec-----------CCcEEeehh-hhhhhhhcccccC--------------------
Confidence 64321 2356788888884 666765 799999995 66554443 2221
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEe
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG 474 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg 474 (485)
..|.-|..+.||+.|+..
T Consensus 472 ------------------~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 472 ------------------DAIKHVDVTADGKWILAT 489 (644)
T ss_pred ------------------CceeeEEeeccCcEEEEe
Confidence 278888889999886654
No 403
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=14 Score=36.85 Aligned_cols=175 Identities=17% Similarity=0.154 Sum_probs=96.6
Q ss_pred EEEeCCCCeEEEEeeC--CCcEEEeecCCCeEEEEEc-C-CcEEE--EEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 198 VEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS-D-KNVQE--IKISPGI-MLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~--D~tiKlWdl~~g~~l~tl~-~-~~V~~--VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
++.. ||.++.|.++ -+.|++|||.+|+.+.+-. . ..+.. +.-.-+. ..|+- .++-.-..|..|-++|
T Consensus 51 L~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw----~egvaf~~d~~t~~~l 124 (262)
T COG3823 51 LEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW----KEGVAFKYDADTLEEL 124 (262)
T ss_pred eeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe----ccceeEEEChHHhhhh
Confidence 4554 6788888764 5679999999999876643 1 11111 1111111 11221 1234455677777777
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc-c-CCCceEE---EEEcCCCcEEEEEe-CCcEE
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR-T-EFMTPSA---FIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~-g-h~~~v~a---vaFspdg~llaS~s-D~TIk 344 (485)
..++. .+.-|.+. .|+..|+++...-|++.-|.++...+.+.. . ...+|.. +-+ =||.+.|--. +..|.
T Consensus 125 g~~~y-~GeGWgLt---~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~ 199 (262)
T COG3823 125 GRFSY-EGEGWGLT---SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIA 199 (262)
T ss_pred ccccc-CCcceeee---cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceE
Confidence 77763 24456665 457778888788888888888754433221 0 0011111 111 1666666655 55555
Q ss_pred EEeCC-CcEEEEeecCCC-------CCCCCCeeEEEECCCC-CEEEEE
Q 011452 345 VWNFR-GELVTSFEDHLL-------WHPDCNTNNIYITSDQ-DLIISY 383 (485)
Q Consensus 345 lWd~~-G~ll~tl~gH~~-------~~~~~~v~svafSpDG-~~LaS~ 383 (485)
.=|.+ |+.+..++-... -..+.+.|.||+-|++ +++++|
T Consensus 200 rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 200 RIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 55664 777665432111 1111237899999998 455553
No 404
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.79 E-value=1 Score=33.99 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEE
Q 011452 321 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 353 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll 353 (485)
..|..++|+|...+||.+. ||.|-|+.++|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 3688999999999999999 99999999887754
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.40 E-value=58 Score=38.12 Aligned_cols=66 Identities=18% Similarity=0.331 Sum_probs=43.7
Q ss_pred CCcEEEEeCC-CcEEEEee--cCCCCCCCCCeeEEE--EC-CCCC---EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 340 NRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIY--IT-SDQD---LIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 340 D~TIklWd~~-G~ll~tl~--gH~~~~~~~~v~sva--fS-pDG~---~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
.+.|---|.+ ||++-.++ -|..|+.|..-..+- +. .||+ .++.+++ +|.+.+.|-.|||.
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTK-----------QGQIYVLDRRTGEP 481 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECC-----------CCEEEEEECCCCCE
Confidence 3455567774 88776554 466776553211221 22 2774 7888776 79999999999999
Q ss_pred EEEecC
Q 011452 411 LAKIRA 416 (485)
Q Consensus 411 l~tl~g 416 (485)
|...+.
T Consensus 482 l~~~~e 487 (764)
T TIGR03074 482 IVPVEE 487 (764)
T ss_pred Eeecee
Confidence 987654
No 406
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.05 E-value=0.98 Score=49.60 Aligned_cols=39 Identities=23% Similarity=0.495 Sum_probs=31.7
Q ss_pred eeEEEECC----CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 368 TNNIYITS----DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 368 v~svafSp----DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+.++++++ +..+|++-|. |+++||||+.|++|++++.-.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~-----------D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSR-----------DHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEE-----ETTTEEEEEET-----------TSEEEEEETTTTCEEEEEETT
T ss_pred cceEEEecceeCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeccc
Confidence 66777877 8899999997 799999999999998887443
No 407
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.56 E-value=2.1 Score=48.57 Aligned_cols=118 Identities=12% Similarity=0.062 Sum_probs=84.3
Q ss_pred ccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeE
Q 011452 95 RSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (485)
Q Consensus 95 ~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~ 174 (485)
+.....+...+++|+-|+.-|.+.|+++.+|+.+..=+++.+..+-....|++..+.|.++ +. ..|-+..
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt----~~------g~V~v~q 104 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT----AS------GRVSVFQ 104 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc----CC------ceEEeeh
Confidence 4445566666999999999999999999988877655555566778888899888777654 33 4666666
Q ss_pred eccCCcCcccceeeeccc---cCceEEEEeCCCCeEEEEeeCCCcEEEeecCC
Q 011452 175 IRRGKPDAGFALFESESL---KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 224 (485)
Q Consensus 175 i~~G~~~~~~~lf~~~~~---~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~ 224 (485)
+..+++ ..+..++.++. ..+.++++| +||+.|-||..-|+|-+=.|.+
T Consensus 105 l~~~~p-~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 105 LNKELP-RDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhccCC-CcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence 655443 11334555433 345578998 8999999998888887766655
No 408
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.32 E-value=5.7 Score=39.05 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=55.2
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-------c-------cCCCceEEEEEcCCCcEEEEEeCCcEEEEe
Q 011452 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-------R-------TEFMTPSAFIFLYENQLFLTFRNRTVAVWN 347 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-------~-------gh~~~v~avaFspdg~llaS~sD~TIklWd 347 (485)
.+.|....+..|++-..+|.+.+||+.+++++-.. . .....|..+.++.+|.-+++.+++..-.||
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 34455566788888899999999999999874332 2 355678888899999999999988888999
Q ss_pred CCCcE
Q 011452 348 FRGEL 352 (485)
Q Consensus 348 ~~G~l 352 (485)
.+=++
T Consensus 94 ~~L~~ 98 (219)
T PF07569_consen 94 PDLGC 98 (219)
T ss_pred cccce
Confidence 87333
No 409
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.12 E-value=2.9 Score=41.13 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=54.2
Q ss_pred cccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEE-------eec------CCcccEEEEEEeeCCCEEEEE
Q 011452 88 VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICF-------LNV------TADEVIRSLFYNKNNDSLITV 154 (485)
Q Consensus 88 ~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~t-------l~g------~~~~~i~sv~~spdg~~Las~ 154 (485)
..|+|.=.++|.-+...+++|.+...+|++.+||+.+++++.. |+. .....|.++.++.+|.-||+-
T Consensus 5 l~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred ccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4688888889888888899999999999999999998886542 221 245568888888888877775
Q ss_pred E
Q 011452 155 S 155 (485)
Q Consensus 155 S 155 (485)
|
T Consensus 85 s 85 (219)
T PF07569_consen 85 S 85 (219)
T ss_pred e
Confidence 5
No 410
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.92 E-value=0.19 Score=57.93 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=87.3
Q ss_pred EeCCCCeEEEEeeCCCcEEEeecC-CCe----EEEEEc--C-C-cEEEEEEcCCc---------eEEEEEcCCCCeeEEE
Q 011452 200 FDDVNGKVLTYSAQDSIYKVFDLK-NYT----MLYSIS--D-K-NVQEIKISPGI---------MLLIFTKASGHVPLKI 261 (485)
Q Consensus 200 Fs~pnG~~Las~s~D~tiKlWdl~-~g~----~l~tl~--~-~-~V~~VafSpg~---------~ll~sss~~~D~tIkl 261 (485)
.| |||+++|.+..||.++.|... +|+ |++..+ + + .|-.+ |.... .+++... +-..-+|+
T Consensus 243 lS-pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Ittt-d~nre~k~ 319 (1283)
T KOG1916|consen 243 LS-PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTT-DVNREEKF 319 (1283)
T ss_pred eC-CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecc-cCCcceeE
Confidence 45 899999999999999999865 443 444443 2 2 23222 33211 2333322 34478999
Q ss_pred EecCCCeEEEEeecCCcceeEEEEEecCCC------------EEEEEeCCCcEEEEECCCCeeEEecccC-CCceEEEEE
Q 011452 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNE------------KLLVKQENENLQILDVRNFELTEVSRTE-FMTPSAFIF 328 (485)
Q Consensus 262 Wdi~tG~~L~tl~~~~~~~~~V~f~~~~~~------------~lls~s~D~tIkIWDv~tg~~~~~l~gh-~~~v~avaF 328 (485)
|.-.-.+|+ +...-..+..|. +++++ .++..+.|++|+||.=+.-...-+++.| .+.|.+-+|
T Consensus 320 w~~a~w~Cl--l~~~~d~v~iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~~~~~hpV~S~i~ 395 (1283)
T KOG1916|consen 320 WAEAPWQCL--LDKLIDGVQIVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSRPHDGHPVLSAIF 395 (1283)
T ss_pred eeccchhhh--hhhcccceEeec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhhhhhcceeccccc
Confidence 998888888 222223444555 44443 2233568999999975543333333333 335666555
Q ss_pred --c---CCCcEEEEEe--CCcEEEEeCCCc
Q 011452 329 --L---YENQLFLTFR--NRTVAVWNFRGE 351 (485)
Q Consensus 329 --s---pdg~llaS~s--D~TIklWd~~G~ 351 (485)
| |+-.-++++. ++.+++|-+.|+
T Consensus 396 v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~ 425 (1283)
T KOG1916|consen 396 VTSPERPDHIELITGGPLNRELKIWVSAGE 425 (1283)
T ss_pred cccCCCccccccccCCcchhhhhhhhhccc
Confidence 3 3455567776 899999987654
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.72 E-value=26 Score=35.72 Aligned_cols=139 Identities=7% Similarity=0.034 Sum_probs=84.4
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE-EEEeeCCCcE
Q 011452 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV-LTYSAQDSIY 217 (485)
Q Consensus 139 i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~-Las~s~D~ti 217 (485)
.+.---+|+|++.+-.=++-+++|....|- ...|- ..+|.. .+|.. +.-+..+++| .+.|. -...+.+-+|
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~-Ly~~~-~~h~v~---~i~~~--v~IsNgl~Wd-~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGE-LYSWL-AGHQVE---LIWNC--VGISNGLAWD-SDAKKFYYIDSLNYEV 182 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccE-EEEec-cCCCce---eeehh--ccCCcccccc-ccCcEEEEEccCceEE
Confidence 334455899998765556666776666643 34444 455552 24443 3444578887 45554 4456778888
Q ss_pred EEee--cCCCeE-----EEEEcC-----CcE-EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEE
Q 011452 218 KVFD--LKNYTM-----LYSISD-----KNV-QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 218 KlWd--l~~g~~-----l~tl~~-----~~V-~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~ 284 (485)
+-|| ..+|.+ ++.+.. +.. -..++-..|.|.++.-.. ++|.-.|..||+.|++++-.+..+.+++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng--~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG--GTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC--cEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 8899 566653 444431 111 113333223332222222 6889999999999999997788899999
Q ss_pred EEe
Q 011452 285 FIE 287 (485)
Q Consensus 285 f~~ 287 (485)
|--
T Consensus 261 FgG 263 (310)
T KOG4499|consen 261 FGG 263 (310)
T ss_pred ecC
Confidence 953
No 412
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=86.68 E-value=1.3 Score=33.35 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 458 DITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|..++|+|....||.|+.||.|.|++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~R 39 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYR 39 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEE
Confidence 799999999999999999999998875
No 413
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.50 E-value=8.6 Score=38.70 Aligned_cols=77 Identities=13% Similarity=0.064 Sum_probs=50.6
Q ss_pred EEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--C--CcEEEEeCCC---cEE-E----EeecCCCCCCCCCeeE
Q 011452 303 QILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--N--RTVAVWNFRG---ELV-T----SFEDHLLWHPDCNTNN 370 (485)
Q Consensus 303 kIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D--~TIklWd~~G---~ll-~----tl~gH~~~~~~~~v~s 370 (485)
-+||+.+++..-.-........+=+|.|||++|.+|+ | +.|++++-.. .+- . .|. ..-| =.+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RW-----YpT 122 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRW-----YPT 122 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCc-----ccc
Confidence 4788888776544334444566667999999999998 4 3688887522 221 1 121 1224 256
Q ss_pred EEECCCCCEEEEEec
Q 011452 371 IYITSDQDLIISYCK 385 (485)
Q Consensus 371 vafSpDG~~LaS~s~ 385 (485)
+..-|||+.||-|+.
T Consensus 123 ~~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGS 137 (243)
T ss_pred ceECCCCCEEEEeCc
Confidence 777899999999875
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=86.00 E-value=46 Score=34.53 Aligned_cols=142 Identities=11% Similarity=0.008 Sum_probs=79.1
Q ss_pred CcEEEEEEcCCceEEEEEcCCCCeeEE-EEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 011452 234 KNVQEIKISPGIMLLIFTKASGHVPLK-ILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311 (485)
Q Consensus 234 ~~V~~VafSpg~~ll~sss~~~D~tIk-lWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~ 311 (485)
..+.++++.|++.+++.+.. +.+. .+| ..|+.-.... .-...+..+.+. ++ +.+++.+..+.+++=....|+
T Consensus 173 g~~~~i~~~~~g~~v~~g~~---G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~-~~-g~~~~vg~~G~~~~~s~d~G~ 246 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSR---GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQ-PD-GNLWMLARGGQIRFNDPDDLE 246 (334)
T ss_pred ceEEEEEECCCCeEEEEeCC---ceEEEEcC-CCCCeEEEeeCCCcccceeeeEc-CC-CCEEEEecCCEEEEccCCCCC
Confidence 46888999998877665432 2332 222 1223222222 112345677775 33 445555667777643344444
Q ss_pred eEEecc----cCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 312 LTEVSR----TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 312 ~~~~l~----gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
.-+... .-...+.+++|.|++++++.+.++.|. ...+ |+--+.+..+..- + ...+.+.|-.+++.+|.|.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~-~-~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEV-P-SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCC-C-cceEEEEEeCCCceEEECC
Confidence 322111 112357889999999988887788664 4444 6644443321111 1 1267888888889988875
No 415
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.86 E-value=3.5 Score=43.80 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 458 DITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|.+|..+|.++.||+.+.+++|++|++
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEE
Confidence 4999999999999999999999999984
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.46 E-value=27 Score=39.88 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=70.9
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEE-EecCCCEEEEEeCCCcEEEEECC----
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDF-IEQFNEKLLVKQENENLQILDVR---- 308 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f-~~~~~~~lls~s~D~tIkIWDv~---- 308 (485)
+..-|.-|.=+++++-.++. .++.|||...|.+...-. ...+.|..++| +.|+++-+++-|..+.|.|+--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~--~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSR--SELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCC--CEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 33444455433444443322 699999999988654332 23467888988 45778888888999999998532
Q ss_pred -CC----eeEEe--cccCC-CceEEEEEcCCCcEEEEEeCCcEEEEeC
Q 011452 309 -NF----ELTEV--SRTEF-MTPSAFIFLYENQLFLTFRNRTVAVWNF 348 (485)
Q Consensus 309 -tg----~~~~~--l~gh~-~~v~avaFspdg~llaS~sD~TIklWd~ 348 (485)
+. ..++. +..|+ +.|...+|.+||.+++.+ ++.+-|.|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 11 12222 23444 578999999999977654 344556654
No 417
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.51 E-value=47 Score=33.32 Aligned_cols=170 Identities=11% Similarity=0.034 Sum_probs=90.0
Q ss_pred CeeEEEEecCCCeEEEEeecCCcceeEEEEEe---cCCCEE-EEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC
Q 011452 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE---QFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE 331 (485)
Q Consensus 256 D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~---~~~~~l-ls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd 331 (485)
-.-|+.||+++|+++.+-+-....+ |-+ .-++.+ +-.=.|+---++|.++-+++..+. -.+.=|.+ ..|
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~----FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgL--t~d 139 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTV----FGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGL--TSD 139 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccc----cccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceee--ecC
Confidence 3589999999999987655211111 110 001111 112256777788888888876652 11222444 445
Q ss_pred CcEEEEEe-CCcEEEEeC-----CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 332 NQLFLTFR-NRTVAVWNF-----RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 332 g~llaS~s-D~TIklWd~-----~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
++-|..+. ..|+..-|. .+....|++|-.-. ..|.+-+ =||.+.|--=. +..|---|.
T Consensus 140 ~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~----~LNELE~-VdG~lyANVw~-----------t~~I~rI~p 203 (262)
T COG3823 140 DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVS----KLNELEW-VDGELYANVWQ-----------TTRIARIDP 203 (262)
T ss_pred CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecc----cccceee-eccEEEEeeee-----------ecceEEEcC
Confidence 55455554 666665553 13444455543211 1233332 15555554332 244555588
Q ss_pred CCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC-CEEEEe
Q 011452 406 LTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR-NEIYTG 474 (485)
Q Consensus 406 ~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg-~~LaSg 474 (485)
++|+.++.+.-..- +.++. .+ ...+.-...+||.|++ +.++||
T Consensus 204 ~sGrV~~widlS~L---~~~~~-~~----------------------~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 204 DSGRVVAWIDLSGL---LKELN-LD----------------------KSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCcEEEEEEccCC---chhcC-cc----------------------ccccccccceeecCcCCeEEEec
Confidence 89999988865431 11111 11 1112366789999999 667777
No 418
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=84.50 E-value=14 Score=41.67 Aligned_cols=149 Identities=12% Similarity=0.159 Sum_probs=87.9
Q ss_pred cCCCeEEEEE----cC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC---CE
Q 011452 222 LKNYTMLYSI----SD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN---EK 292 (485)
Q Consensus 222 l~~g~~l~tl----~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~---~~ 292 (485)
|-.|++++|. ++ |+|..||+.+|...+-+.-.-..+.+|.= +-+.+-.|+ +|..|.|.|+.. -.
T Consensus 2 LGkgkLLRTGlNaL~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~pa 74 (671)
T PF15390_consen 2 LGKGKLLRTGLNALHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPA 74 (671)
T ss_pred CcccchhhcchHHHHhhhccccceEecCCCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCc
Confidence 3456666554 32 78999999998776654211000112211 123444454 688999976532 37
Q ss_pred EEEEeCCCcEEEEECC-----CCeeEEecccCC-----CceEEEEEcCCCcEEEEEe--CCcEEEEeCC--Cc-EEEEee
Q 011452 293 LLVKQENENLQILDVR-----NFELTEVSRTEF-----MTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE-LVTSFE 357 (485)
Q Consensus 293 lls~s~D~tIkIWDv~-----tg~~~~~l~gh~-----~~v~avaFspdg~llaS~s--D~TIklWd~~--G~-ll~tl~ 357 (485)
||+-+..+.|-+|.+. +++++..-.-|- .-+-...|.|....|+--. |-.| +.+++ +. ....+.
T Consensus 75 LLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~ 153 (671)
T PF15390_consen 75 LLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIK 153 (671)
T ss_pred eEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEecc
Confidence 8899999999999987 222222211111 1223345677777766554 4444 67774 33 344555
Q ss_pred cCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 358 DHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
++.. |...+|++||+.|+-+-
T Consensus 154 ~~G~------IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 154 TSGL------IHCACWTKDGQRLVVAV 174 (671)
T ss_pred CCce------EEEEEecCcCCEEEEEe
Confidence 4432 78899999999999874
No 419
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.82 E-value=72 Score=34.92 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=79.4
Q ss_pred CceEEEEE-cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe--cccCC
Q 011452 244 GIMLLIFT-KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV--SRTEF 320 (485)
Q Consensus 244 g~~ll~ss-s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~--l~gh~ 320 (485)
++..++.. .......+-+.|. +|.+...+.....+...+.+ ..++.|++++. ..++..|+. |+.+.. +.+..
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~--l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQ--LPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE---TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTE
T ss_pred CcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeE--cCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcc
Confidence 55555553 1123367778885 78888777632222222333 34667777654 888888886 554332 22200
Q ss_pred -CceEEEEEcCCCcEEEEEe--------------CCcEEEEeCCCcEEEE--eecCC-----------------------
Q 011452 321 -MTPSAFIFLYENQLFLTFR--------------NRTVAVWNFRGELVTS--FEDHL----------------------- 360 (485)
Q Consensus 321 -~~v~avaFspdg~llaS~s--------------D~TIklWd~~G~ll~t--l~gH~----------------------- 360 (485)
..--.+.+.|+|.+|+.+. ...|-..|-+|+.+.. +.+|.
T Consensus 189 ~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 189 YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 0011266899999888665 1234445544776664 33343
Q ss_pred CC-CCCCCeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 361 LW-HPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 361 ~~-~~~~~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
+| | +|+|.+.| |+.+|+|+=. -..|-..|..||+.+..|-+|.+
T Consensus 269 DW~H----~Nsi~yd~~dd~iivSsR~-----------~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 269 DWLH----INSIDYDPSDDSIIVSSRH-----------QSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp BS------EEEEEEETTTTEEEEEETT-----------T-EEEEEE-TTS-EEEEES-STT
T ss_pred Cccc----cCccEEeCCCCeEEEEcCc-----------ceEEEEEECCCCcEEEEeCCCCC
Confidence 12 3 79999988 7777777532 34777778889999999988764
No 420
>PHA02713 hypothetical protein; Provisional
Probab=83.76 E-value=64 Score=36.05 Aligned_cols=203 Identities=8% Similarity=-0.005 Sum_probs=99.0
Q ss_pred cCEEEEEeCC------CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC
Q 011452 105 RDIVFALAQS------GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (485)
Q Consensus 105 ~~~ias~s~d------gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G 178 (485)
+.+.+.|+.+ .++-.+|..+++- ..+..-+...-...+-.-+|...|.++.++. -...++..+|..+.
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~-----~~~~sve~Ydp~~~ 377 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLAVIDDTIYAIGGQNGT-----NVERTIECYTMGDD 377 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEEEECCEEEEECCcCCC-----CCCceEEEEECCCC
Confidence 7777777754 3455677665532 1121101111111222345666666543221 11246777887665
Q ss_pred CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCC-----------------------cEEEeecCCCe--EEEEEcC
Q 011452 179 KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-----------------------IYKVFDLKNYT--MLYSISD 233 (485)
Q Consensus 179 ~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~-----------------------tiKlWdl~~g~--~l~tl~~ 233 (485)
+.....++-. .......+++ +|++.+.|+.++ ++-.+|..+.+ .+..+..
T Consensus 378 ~W~~~~~mp~--~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~ 452 (557)
T PHA02713 378 KWKMLPDMPI--ALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT 452 (557)
T ss_pred eEEECCCCCc--ccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence 5421111111 1111223444 689999988663 35566666544 2222221
Q ss_pred CcEE-EEEEcCCceEEEEEcCCC---CeeEEEEecCC-C--eEEEEeecCCcceeEEEEEecCCCEEEEEeCCC--cEEE
Q 011452 234 KNVQ-EIKISPGIMLLIFTKASG---HVPLKILSIED-G--TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE--NLQI 304 (485)
Q Consensus 234 ~~V~-~VafSpg~~ll~sss~~~---D~tIklWdi~t-G--~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~--tIkI 304 (485)
.... +++.-.|...++++..+. ...+..+|.++ . +.+..++........+. .+|...++||.|+ ++..
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~---~~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL---HDNTIMMLHCYESYMLQDT 529 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE---ECCEEEEEeeecceeehhh
Confidence 1111 233334544454432111 13467888886 3 34455543222222222 2355556688887 8999
Q ss_pred EECCCCeeEEecccCCC
Q 011452 305 LDVRNFELTEVSRTEFM 321 (485)
Q Consensus 305 WDv~tg~~~~~l~gh~~ 321 (485)
+|+.+.+-...-..|..
T Consensus 530 yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 530 FNVYTYEWNHICHQHSN 546 (557)
T ss_pred cCcccccccchhhhcCC
Confidence 99999887766656653
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=83.59 E-value=7.6 Score=42.01 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=62.4
Q ss_pred EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEE-CC---------------
Q 011452 314 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI-TS--------------- 375 (485)
Q Consensus 314 ~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svaf-Sp--------------- 375 (485)
..+....-.+.+++.+|.+++.|... =|-|-|+|+. |..++-++|-.+.+ +--+.. .+
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq----c~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ----CGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce----EEEEEeecccccccccccccCCCC
Confidence 33444455678899999999888865 6789999995 88888777654321 111111 11
Q ss_pred -CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 376 -DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 376 -DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
-..+|+-+.. .-|.|.||++++|..++.+.-
T Consensus 377 ~~~l~LvIyap----------rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 377 RFALFLVIYAP----------RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cceEEEEEEec----------cCCeEEEEecCCCCEEEEEEe
Confidence 1357787765 369999999999999999865
No 422
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=83.37 E-value=70 Score=34.39 Aligned_cols=166 Identities=12% Similarity=0.091 Sum_probs=93.9
Q ss_pred CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee--c------CCcceeEEEEE--ecCCC-----EEEEEe
Q 011452 233 DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN--H------LLHRNKKVDFI--EQFNE-----KLLVKQ 297 (485)
Q Consensus 233 ~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~--~------~~~~~~~V~f~--~~~~~-----~lls~s 297 (485)
...|.+++.|+=|..+++. .++++.|-|+..-..+..-. . ....+..+.|. +..++ .|++|-
T Consensus 86 ~g~vtal~~S~iGFvaigy---~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGY---ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEE---TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred CCcEeEEecCCCcEEEEEe---cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 5689999999988888774 33799999998888876622 2 11134466664 12221 566677
Q ss_pred CCCcEEEEECC--C-Ce----eEEecccCCCceEEEE-EcCC---------------------CcEEEEEeCCcEEEEeC
Q 011452 298 ENENLQILDVR--N-FE----LTEVSRTEFMTPSAFI-FLYE---------------------NQLFLTFRNRTVAVWNF 348 (485)
Q Consensus 298 ~D~tIkIWDv~--t-g~----~~~~l~gh~~~v~ava-Fspd---------------------g~llaS~sD~TIklWd~ 348 (485)
..|++-++.+. . +. .......|...|.++. |..+ ..+++.+++..||+...
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 88999888764 1 21 2222234556777665 5322 23666777899999998
Q ss_pred -CCcEEEEeecCCCCCCCCCeeEEEEC-----CCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 349 -RGELVTSFEDHLLWHPDCNTNNIYIT-----SDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 349 -~G~ll~tl~gH~~~~~~~~v~svafS-----pDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
++++.+........ ...+.+- ..+..|++-.. +|.|++..+-.=+.+..++-+
T Consensus 243 ~~~k~~~K~~~~~~~-----~~~~~vv~~~~~~~~~~Lv~l~~-----------~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 243 PKSKGAHKSFDDPFL-----CSSASVVPTISRNGGYCLVCLFN-----------NGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp T---EEEEE-SS-EE-----EEEEEEEEEE-EEEEEEEEEEET-----------TSEEEEEETTT--EEEEEE-S
T ss_pred CCCcccceeeccccc-----cceEEEEeecccCCceEEEEEEC-----------CCcEEEEECCCchHhhcccCC
Confidence 47765433332211 4455553 46777888775 799999999877777766554
No 423
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.89 E-value=22 Score=35.75 Aligned_cols=138 Identities=16% Similarity=0.110 Sum_probs=76.7
Q ss_pred EEEecCCCeEEEEeecCCccee--EEEEEecCCCEEEEEe-CC--CcEEEEECCC----CeeEEec--ccCCCceEEEEE
Q 011452 260 KILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVKQ-EN--ENLQILDVRN----FELTEVS--RTEFMTPSAFIF 328 (485)
Q Consensus 260 klWdi~tG~~L~tl~~~~~~~~--~V~f~~~~~~~lls~s-~D--~tIkIWDv~t----g~~~~~l--~gh~~~v~avaF 328 (485)
-+||+.+++.. .+.-. ...+ +=+|. ++|..|.+|+ .| ..+|+++..+ ....+.. -...-|=-++.-
T Consensus 49 ~~yD~~tn~~r-pl~v~-td~FCSgg~~L-~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTVQ-TDTFCSGGAFL-PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEecCCCcEE-eccCC-CCCcccCcCCC-CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 36777776542 22210 1111 11232 4554454554 23 5688888664 1222211 122235556667
Q ss_pred cCCCcEEEEEe--CCcEEEEeCC--Cc-EEE--Eee---cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 329 LYENQLFLTFR--NRTVAVWNFR--GE-LVT--SFE---DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 329 spdg~llaS~s--D~TIklWd~~--G~-ll~--tl~---gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
+|||+.|+-|+ .-+...|.-. +. ... -|. ..... +- =.-+...|||++++.+.. +
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~--nl-YP~~~llPdG~lFi~an~------------~ 190 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPN--NL-YPFVHLLPDGNLFIFANR------------G 190 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCcc--cc-CceEEEcCCCCEEEEEcC------------C
Confidence 89999988887 5588888862 22 111 111 11111 11 136788999999999864 3
Q ss_pred eEEEEeCCCCeEEEEecC
Q 011452 399 SINISNILTGKCLAKIRA 416 (485)
Q Consensus 399 tIklWdl~TGk~l~tl~g 416 (485)
+ .|+|..+.+.+++|..
T Consensus 191 s-~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 191 S-IIYDYKTNTVVRTLPD 207 (243)
T ss_pred c-EEEeCCCCeEEeeCCC
Confidence 3 4789999988887764
No 424
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.44 E-value=6.1 Score=43.42 Aligned_cols=39 Identities=10% Similarity=0.422 Sum_probs=28.7
Q ss_pred CceEEEEEcC----CCcEEEEEe-CCcEEEEeCC-CcEEEEeecC
Q 011452 321 MTPSAFIFLY----ENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 359 (485)
Q Consensus 321 ~~v~avaFsp----dg~llaS~s-D~TIklWd~~-G~ll~tl~gH 359 (485)
+.+.+.++++ +..+|++-+ |+++|+||+. ++++.++.-.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 3456666766 788888998 9999999996 9998877544
No 425
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.64 E-value=10 Score=45.42 Aligned_cols=104 Identities=12% Similarity=0.091 Sum_probs=73.7
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCC
Q 011452 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHL 360 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~ 360 (485)
.+.+.+......++...|..|++.-+.-.......-.-...+.+|+|+|-|+.++-+. +||+.-+...++.+..+.+-.
T Consensus 160 ~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp 239 (1405)
T KOG3630|consen 160 KNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP 239 (1405)
T ss_pred cccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC
Confidence 4444443344555666788887766542221111112345789999999999999998 999999999999888776554
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
... +..|.+|.|-....+||.|+.-
T Consensus 240 ~~e-~yrvl~v~Wl~t~eflvvy~n~ 264 (1405)
T KOG3630|consen 240 VEE-NYRVLSVTWLSTQEFLVVYGNV 264 (1405)
T ss_pred cCC-CcceeEEEEecceeEEEEeccc
Confidence 432 4568999999999999999864
No 426
>PHA02713 hypothetical protein; Provisional
Probab=80.90 E-value=67 Score=35.87 Aligned_cols=190 Identities=9% Similarity=0.048 Sum_probs=98.2
Q ss_pred CCeEEEEeeCC------CcEEEeecCCCeE--EEEEcCC-cEEEEEEcCCceEEEEEcCCC--CeeEEEEecCCCeEE--
Q 011452 204 NGKVLTYSAQD------SIYKVFDLKNYTM--LYSISDK-NVQEIKISPGIMLLIFTKASG--HVPLKILSIEDGTVL-- 270 (485)
Q Consensus 204 nG~~Las~s~D------~tiKlWdl~~g~~--l~tl~~~-~V~~VafSpg~~ll~sss~~~--D~tIklWdi~tG~~L-- 270 (485)
++++.+.|+.+ .++-.+|..+.+- +-.+... .-.+++...|..+++++.... -.++..+|..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 67888888754 3455667665542 1111111 111333335555555533211 146888998876432
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCC-----------------------CcEEEEECCCCeeEEecccCCCceEEEE
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQEN-----------------------ENLQILDVRNFELTEVSRTEFMTPSAFI 327 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D-----------------------~tIkIWDv~tg~~~~~l~gh~~~v~ava 327 (485)
..+...... ..++ ..++...++||.+ .++..+|.++.+-.....-......+-+
T Consensus 383 ~~mp~~r~~-~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 383 PDMPIALSS-YGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCccccc-ccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 222211011 1222 1234444556654 3588899998876444322222222233
Q ss_pred EcCCCcEEEEEe-C------CcEEEEeCCC-c---EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 328 FLYENQLFLTFR-N------RTVAVWNFRG-E---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 328 Fspdg~llaS~s-D------~TIklWd~~G-~---ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
-.-+|++.+.|+ + .+|..+|.+. . .+..+.-.... ...+++ +|++.+.|+.+ +
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-----~~~~~~--~~~iyv~Gg~~--------~- 523 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-----LHTILH--DNTIMMLHCYE--------S- 523 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-----ceeEEE--CCEEEEEeeec--------c-
Confidence 355788888876 4 2467788753 2 33444332211 333444 88999998862 1
Q ss_pred CCeEEEEeCCCCeEEE
Q 011452 397 AGSINISNILTGKCLA 412 (485)
Q Consensus 397 DgtIklWdl~TGk~l~ 412 (485)
..++-.+|+.|.+--.
T Consensus 524 ~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 524 YMLQDTFNVYTYEWNH 539 (557)
T ss_pred eeehhhcCcccccccc
Confidence 1378889988877543
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=80.90 E-value=31 Score=39.39 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=58.6
Q ss_pred EeCCCcEEEEECCCCeeE--EecccCCCceEEEEE--cCCCcEEEEEe-CCcEEEEeC------C-C---cEEEE--eec
Q 011452 296 KQENENLQILDVRNFELT--EVSRTEFMTPSAFIF--LYENQLFLTFR-NRTVAVWNF------R-G---ELVTS--FED 358 (485)
Q Consensus 296 ~s~D~tIkIWDv~tg~~~--~~l~gh~~~v~avaF--spdg~llaS~s-D~TIklWd~------~-G---~ll~t--l~g 358 (485)
.+...++.|||.+.+.+. +.+ .+.+.|..+.| .||||.+++-+ .+.|.|+-- + + ..++. +.+
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~ 125 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS 125 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec
Confidence 456789999999988753 233 34567877765 79999999999 999999952 1 1 12332 234
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
|+.. . |.+..+.+||.+++.++
T Consensus 126 ~T~h---~-Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 126 HTPH---P-IGDSIWLKDGTLVVGSG 147 (631)
T ss_pred CCCC---C-ccceeEecCCeEEEEeC
Confidence 4421 1 77899999999888654
No 428
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.70 E-value=6.8 Score=27.21 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=30.1
Q ss_pred cCCCEEEEEe-CCCcEEEEECCCCeeEEecccCCCceEEEEEc
Q 011452 288 QFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 288 ~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs 329 (485)
|++++|.++. .+++|-++|..+++.+....- ...+..++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 4567777764 789999999999988777654 3456667664
No 429
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=80.51 E-value=71 Score=32.59 Aligned_cols=158 Identities=14% Similarity=0.215 Sum_probs=86.7
Q ss_pred EeecCCCeEEEEEc--------CCcEEEEEEcC--C----ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCccee-EE
Q 011452 219 VFDLKNYTMLYSIS--------DKNVQEIKISP--G----IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK-KV 283 (485)
Q Consensus 219 lWdl~~g~~l~tl~--------~~~V~~VafSp--g----~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~-~V 283 (485)
+||+++.+.++++. +...+.+++.. + +...++.+ ...-|-+.|+.+|+--+.+.++..... ..
T Consensus 38 ~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~--~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~ 115 (287)
T PF03022_consen 38 AFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS--GGPGLIVYDLATGKSWRVLHNSFSPDPDAG 115 (287)
T ss_dssp EEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET--TTCEEEEEETTTTEEEEEETCGCTTS-SSE
T ss_pred EEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC--CcCcEEEEEccCCcEEEEecCCcceecccc
Confidence 56677766655542 24688888874 3 34444433 336899999999998877765433221 12
Q ss_pred E-------EEecCCCEEEEE----eCCCcEEEEECCCC-ee----------------------EEecccCC-CceEEEEE
Q 011452 284 D-------FIEQFNEKLLVK----QENENLQILDVRNF-EL----------------------TEVSRTEF-MTPSAFIF 328 (485)
Q Consensus 284 ~-------f~~~~~~~lls~----s~D~tIkIWDv~tg-~~----------------------~~~l~gh~-~~v~avaF 328 (485)
. |.-+++ ..-+. +.|+..--|..-++ .+ .+.+ |.. ......++
T Consensus 116 ~~~i~g~~~~~~dg-~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~ 193 (287)
T PF03022_consen 116 PFTIGGESFQWPDG-IFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI 193 (287)
T ss_dssp EEEETTEEEEETTS-EEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred ceeccCceEecCCC-ccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence 2 211211 11111 12332222222222 11 1222 221 24566788
Q ss_pred cCCCcEEEEEe-CCcEEEEeCCC-----cEEEEeec-C-CCCCCCCCeeEEEECC--CCCEEEEEec
Q 011452 329 LYENQLFLTFR-NRTVAVWNFRG-----ELVTSFED-H-LLWHPDCNTNNIYITS--DQDLIISYCK 385 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~G-----~ll~tl~g-H-~~~~~~~~v~svafSp--DG~~LaS~s~ 385 (485)
.++|.++.+-- ...|..||.++ +...-..+ . ..| +.++.|.+ +|.+-+....
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~-----pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQW-----PDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSS-----EEEEEE-T--TS-EEEEE-S
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeec-----cceeeeccccCceEEEEECc
Confidence 99999999988 99999999987 22111222 2 457 89999999 9988887653
No 430
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=79.75 E-value=35 Score=35.19 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=47.2
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccc
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASR 447 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (485)
.-+|++.++|.+++|.=. ....+..-.|.-.+.. |+.+..+.-... +. +...++ .....|
T Consensus 87 ~Egi~~~~~g~~~is~E~-----~~~~~~~p~I~~~~~~-G~~~~~~~vP~~---~~--~~~~~~------~~~~~N--- 146 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEG-----GRTGGIPPRIRRFDLD-GRVIRRFPVPAA---FL--PDANGT------SGRRNN--- 146 (326)
T ss_pred hhHeEEecCCCEEEEeCC-----ccCCCCCCEEEEECCC-CcccceEccccc---cc--cccCcc------ccccCC---
Confidence 458999999999998532 0011112678888866 888887733221 00 000000 000111
Q ss_pred cccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 448 IRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 448 ~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
....+|+++|||+.|+++.+
T Consensus 147 ---------~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 147 ---------RGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred ---------CCeEEEEECCCCCEEEEEEC
Confidence 27889999999998888764
No 431
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=79.64 E-value=79 Score=32.57 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=52.7
Q ss_pred eeEEEEecCCCeEEEEeec--CC-------------------------cceeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011452 257 VPLKILSIEDGTVLKSFNH--LL-------------------------HRNKKVDFIEQFNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~--~~-------------------------~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t 309 (485)
..+.--|++||++|..... |. -|+.+|..- .+|.+|++.=.=.+|-+.|-++
T Consensus 96 ~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~-~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 96 DVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKD-DDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred ceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeec-CCccEEEEecccCEEEEEECCC
Confidence 4667779999999976541 11 013344432 2345555555778999999999
Q ss_pred CeeEEecccCCCc---eE--EEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 310 FELTEVSRTEFMT---PS--AFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 310 g~~~~~l~gh~~~---v~--avaFspdg~llaS~s-D~TIklWd~ 348 (485)
|+.+-.+.|.... .. .+++-.|=+.+-... +++|.|.|=
T Consensus 175 G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 175 GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 9999888766110 01 133333333333333 666666663
No 432
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=78.63 E-value=1e+02 Score=33.19 Aligned_cols=264 Identities=14% Similarity=0.084 Sum_probs=122.0
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEE--eeCCCEEEEEEeecCCCCcccceeEEEE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFY--NKNNDSLITVSVYASDNFSSLRCRSTRI 172 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~--spdg~~Las~S~d~~~d~stL~~~t~~l 172 (485)
.|..|.|+ .--+|.+-.+|-+-||....++.-. +.+.=..+.+ .+.. .+.-+..-+.|
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-----~~~~~~~~~~~~~~~~-------------~~~~~~~l~di 64 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-----NREQPPDLDYNFRRFS-------------LNNSPGKLTDI 64 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S---------------GGGSS-SEEE-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-----ccCCCcccCccccccc-------------ccCCCcceEEe
Confidence 47888888 3358888899999999876443221 0000011111 0100 00001123333
Q ss_pred eEeccCCcCcccc---eeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--C--------CcEEEE
Q 011452 173 EYIRRGKPDAGFA---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D--------KNVQEI 239 (485)
Q Consensus 173 w~i~~G~~~~~~~---lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~--------~~V~~V 239 (485)
-+.....+.+++. |.+.. .+.+-.++.|+ =| .+|-|.+||++.|-|+.....+|.-+ . ..|.++
T Consensus 65 ~~r~~~~~~~gf~P~~l~~~~-~g~vtal~~S~-iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 65 SDRAPPSLKEGFLPLTLLDAK-QGPVTALKNSD-IG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp GGG--TT-SEEEEEEEEE----S-SEEEEEE-B-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred hhhCCcccccccCchhheecc-CCcEeEEecCC-Cc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 3322333323321 23322 34556788873 34 78889999999999999999888742 1 268888
Q ss_pred EEcC-----Cc----eEEEEEcCCCCeeEEEEecC---CCeEEEEee----cCCcceeEEEEEecCC-------------
Q 011452 240 KISP-----GI----MLLIFTKASGHVPLKILSIE---DGTVLKSFN----HLLHRNKKVDFIEQFN------------- 290 (485)
Q Consensus 240 afSp-----g~----~ll~sss~~~D~tIklWdi~---tG~~L~tl~----~~~~~~~~V~f~~~~~------------- 290 (485)
.|+. ++ .++++... +.+.++.|. .|.-...+. .+.+.+..|.....+.
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~---G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~ 218 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNS---GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQG 218 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETT---SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred EEEEEecCCCcccceEEEEEeCC---CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence 8882 11 22222211 344343321 111111121 1223333444321111
Q ss_pred -------CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE-----cCCCcEEEEEe-CCcEEEEeC-CCcEEEEe
Q 011452 291 -------EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF-----LYENQLFLTFR-NRTVAVWNF-RGELVTSF 356 (485)
Q Consensus 291 -------~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF-----spdg~llaS~s-D~TIklWd~-~G~ll~tl 356 (485)
..+++...+..|||...-+.++............++.| ...+..|+.-. ||.|+++.+ .=+.+..+
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred cccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 12444456788999999988775544333234445556 34677777777 999999999 56666655
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.-+...+. ..+....|+++|+.++=.+.
T Consensus 299 ~l~~~~d~-~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 299 SLPPPLDS-RRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp E-SS---H-HHHTT-EE-TTS-EEEE-SS
T ss_pred cCCCcccc-ccccccEECCCCCEEEEeCc
Confidence 54322111 11456788999998877664
No 433
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=77.71 E-value=21 Score=37.49 Aligned_cols=110 Identities=10% Similarity=0.046 Sum_probs=68.3
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl 273 (485)
|.+-.| .+|++-++-+..+.+.-+|.++|+..-.. -......++|. |.+++++.|.-. .-++|
T Consensus 205 PhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~-G~llvVgmSk~R-------------~~~~f 268 (335)
T TIGR03032 205 PHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA-GDFAFVGLSKLR-------------ESRVF 268 (335)
T ss_pred CcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee-CCEEEEEecccc-------------CCCCc
Confidence 334445 37888888888999999998888643222 23467788888 666666644321 11334
Q ss_pred ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec--ccCCCceEEEEEcCCCc
Q 011452 274 NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS--RTEFMTPSAFIFLYENQ 333 (485)
Q Consensus 274 ~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~gh~~~v~avaFspdg~ 333 (485)
.|. |-.+++-.. ..-|.+-|++||+.+..+ .+--..+..|++.|+=+
T Consensus 269 ~gl-----------pl~~~l~~~--~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 269 GGL-----------PIEERLDAL--GCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVR 317 (335)
T ss_pred CCC-----------chhhhhhhh--cccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCC
Confidence 431 112222222 367888999999987775 34455777888877643
No 434
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=76.40 E-value=1.4e+02 Score=33.66 Aligned_cols=226 Identities=14% Similarity=0.086 Sum_probs=114.5
Q ss_pred cCEEEEEeCC------CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC
Q 011452 105 RDIVFALAQS------GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (485)
Q Consensus 105 ~~~ias~s~d------gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G 178 (485)
+.+++.|+.+ .+++.+|..+++-...-.-...-.-.+++. -+|...|+++.+. + .....++...|...+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~--~--~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDS--G--SDRLSSVERYDPRTN 359 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccC--C--CcccceEEEecCCCC
Confidence 5666666666 578899988875433222211212333343 3456666655431 1 223357777887777
Q ss_pred CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCc-----EEEeecCCCeE--EEEEcCCcEEEEEEcC-CceEEEE
Q 011452 179 KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI-----YKVFDLKNYTM--LYSISDKNVQEIKISP-GIMLLIF 250 (485)
Q Consensus 179 ~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~t-----iKlWdl~~g~~--l~tl~~~~V~~VafSp-g~~ll~s 250 (485)
+....-++.+. .+-..|+- -+|.+-|.|+.|+. |-.||..+-+- +..... .....+... ++++.+.
T Consensus 360 ~W~~~a~M~~~---R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 360 QWTPVAPMNTK---RSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYII 433 (571)
T ss_pred ceeccCCccCc---cccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEE
Confidence 65332222222 11123443 37999999999854 44555444331 111111 222333332 4444444
Q ss_pred EcCCCC----eeEEEEecCCCeEE--EEeecCCcce-eEEEEEecCCCEE-EEEeCCC-----cEEEEECCCCeeEEec-
Q 011452 251 TKASGH----VPLKILSIEDGTVL--KSFNHLLHRN-KKVDFIEQFNEKL-LVKQENE-----NLQILDVRNFELTEVS- 316 (485)
Q Consensus 251 ss~~~D----~tIklWdi~tG~~L--~tl~~~~~~~-~~V~f~~~~~~~l-ls~s~D~-----tIkIWDv~tg~~~~~l- 316 (485)
++.+.. .++...|..+++-. .++.- .+. ..++.. +++| ++||.|+ +|.-+|.++.+-..+-
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCccc--ccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 332222 46777777766543 23321 111 135543 4455 4567665 4788999988765542
Q ss_pred -ccCCCceEEEEEcCCCcEEEEEe-CC-----cEEEEeC
Q 011452 317 -RTEFMTPSAFIFLYENQLFLTFR-NR-----TVAVWNF 348 (485)
Q Consensus 317 -~gh~~~v~avaFspdg~llaS~s-D~-----TIklWd~ 348 (485)
......+. +-.-++++.+.|+ |+ ||..||.
T Consensus 509 m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 509 MTSPRSAVG--VVVLGGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred Ccccccccc--EEEECCEEEEEecccCccccceeEEcCC
Confidence 11111111 2345788888888 65 5666665
No 435
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=75.93 E-value=11 Score=26.19 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=14.9
Q ss_pred eeEEEECCCCCEEEEEec
Q 011452 368 TNNIYITSDQDLIISYCK 385 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~ 385 (485)
-...+|||||++|+=.+.
T Consensus 11 ~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp EEEEEE-TTSSEEEEEEE
T ss_pred ccCEEEecCCCEEEEEec
Confidence 578999999999998886
No 436
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=75.10 E-value=1.3e+02 Score=32.53 Aligned_cols=144 Identities=12% Similarity=0.094 Sum_probs=83.1
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEE--EEeecCCCCCC
Q 011452 288 QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELV--TSFEDHLLWHP 364 (485)
Q Consensus 288 ~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll--~tl~gH~~~~~ 364 (485)
+++..++++....-++-||--...-..........+.++.|.+||.+++.+.+|.+ +|... |+.- .+|..-.....
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~ 326 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSR 326 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCC
Confidence 44444444444444455554321112222233457889999999999998888876 55553 6421 12321111001
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
...+.+++|.+|++.+++|- .|.|.... .-|+--...+.-+.
T Consensus 327 ~~~l~~v~~~~d~~~~a~G~------------~G~v~~s~-D~G~tW~~~~~~~~------------------------- 368 (398)
T PLN00033 327 GFGILDVGYRSKKEAWAAGG------------SGILLRST-DGGKSWKRDKGADN------------------------- 368 (398)
T ss_pred CcceEEEEEcCCCcEEEEEC------------CCcEEEeC-CCCcceeEccccCC-------------------------
Confidence 11278899999999999875 48776664 44665444332110
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEE
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVH 481 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVk 481 (485)
.+ ...+++.|.++++-.++| .+|.|-
T Consensus 369 -------~~---~~ly~v~f~~~~~g~~~G-~~G~il 394 (398)
T PLN00033 369 -------IA---ANLYSVKFFDDKKGFVLG-NDGVLL 394 (398)
T ss_pred -------CC---cceeEEEEcCCCceEEEe-CCcEEE
Confidence 00 267899999888877777 466654
No 437
>PHA03098 kelch-like protein; Provisional
Probab=74.59 E-value=1.4e+02 Score=32.67 Aligned_cols=147 Identities=8% Similarity=0.065 Sum_probs=73.2
Q ss_pred CCeEEEEeeCC-----CcEEEeecCCCeEE--EEEcCC-cEEEEEEcCCceEEEEEcCCCC---eeEEEEecCCCeEEE-
Q 011452 204 NGKVLTYSAQD-----SIYKVFDLKNYTML--YSISDK-NVQEIKISPGIMLLIFTKASGH---VPLKILSIEDGTVLK- 271 (485)
Q Consensus 204 nG~~Las~s~D-----~tiKlWdl~~g~~l--~tl~~~-~V~~VafSpg~~ll~sss~~~D---~tIklWdi~tG~~L~- 271 (485)
+|++.+.|+.+ .++-.||..+.+-. ..++.. .-.+++...+..+++++....+ ..+..+|+.+++-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 68888888865 34667777665421 112211 1112233345555444321111 467888988765432
Q ss_pred -EeecCCccee-EEEEEecCCCEEEEEeCC--------CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-C
Q 011452 272 -SFNHLLHRNK-KVDFIEQFNEKLLVKQEN--------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-N 340 (485)
Q Consensus 272 -tl~~~~~~~~-~V~f~~~~~~~lls~s~D--------~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D 340 (485)
.+.. .+.. .+.. .++...+.||.+ ..+.++|..+++......-........+...++++++-|+ +
T Consensus 422 ~~~p~--~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 497 (534)
T PHA03098 422 SPLPI--SHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDK 497 (534)
T ss_pred CCCCc--cccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCc
Confidence 2221 1111 2222 223344556532 2388999998876554311111111122234888888877 4
Q ss_pred -----CcEEEEeCCCcEEE
Q 011452 341 -----RTVAVWNFRGELVT 354 (485)
Q Consensus 341 -----~TIklWd~~G~ll~ 354 (485)
.+|.++|.....-.
T Consensus 498 ~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 498 YEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCcccceeEEEeCCCCEEE
Confidence 36777877644333
No 438
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=74.45 E-value=99 Score=35.66 Aligned_cols=163 Identities=20% Similarity=0.272 Sum_probs=94.5
Q ss_pred ccceEEEEEe--cCEEEEEeCCCeEEeeecccC--cEEEEeecCCc-ccEEEEEEee----C-CCEEEEEEeecCCCCcc
Q 011452 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETN--QRICFLNVTAD-EVIRSLFYNK----N-NDSLITVSVYASDNFSS 164 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG--~~l~tl~g~~~-~~i~sv~~sp----d-g~~Las~S~d~~~d~st 164 (485)
.++|..|-|. ++.|++..++|.|++|+.+.+ +.+-++...+. ..+++-|.+- + .+.+.+++.-.+..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k--- 205 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSK--- 205 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCc---
Confidence 6789999998 899999999999999998222 22112333222 2444422221 2 35666666412222
Q ss_pred cceeEEEEeEeccCCcCcccceeeec----cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-C-----C
Q 011452 165 LRCRSTRIEYIRRGKPDAGFALFESE----SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D-----K 234 (485)
Q Consensus 165 L~~~t~~lw~i~~G~~~~~~~lf~~~----~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~-----~ 234 (485)
-..|+..+ +. ...+.++-. ..--...-.|.-.+|++.-. .+++|-+|++.+.+..+++. . .
T Consensus 206 ---~~ykL~~l--~~--~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~ 276 (670)
T PF10395_consen 206 ---LSYKLISL--SN--ESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKE 276 (670)
T ss_pred ---EEEEEEEe--cc--CCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccc
Confidence 34455554 10 011223321 00001122333357988766 68899999999999888874 1 1
Q ss_pred ---cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 235 ---NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 235 ---~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
.|.=.+.||+..|++. ..+|.|.|+.-..+|.++.
T Consensus 277 ~~~~vSl~~~s~nRvLLs~-----~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 277 SDDLVSLKPPSPNRVLLSV-----NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cccceEeecCCCCeEEEEc-----CCEEEEEeehhhhhhhhhh
Confidence 2222334456666643 2699999998877777776
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.21 E-value=11 Score=26.22 Aligned_cols=28 Identities=4% Similarity=0.000 Sum_probs=19.3
Q ss_pred CCCceEEEEEcCCCcEEEEEe--C--CcEEEE
Q 011452 319 EFMTPSAFIFLYENQLFLTFR--N--RTVAVW 346 (485)
Q Consensus 319 h~~~v~avaFspdg~llaS~s--D--~TIklW 346 (485)
....-...+|||||+.|+=.+ + +.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334557788999999988766 5 666665
No 440
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=72.89 E-value=15 Score=25.39 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=26.6
Q ss_pred CCe-EEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEE
Q 011452 204 NGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKI 241 (485)
Q Consensus 204 nG~-~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~Vaf 241 (485)
+|+ +.++.-.+++|-++|+++++.+..+. +..=+.++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 444 56666678999999999999888775 333344444
No 441
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.57 E-value=1.4e+02 Score=31.21 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=111.6
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC---CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~---~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
+.++.|+ |+-.+|-+-.....--||=-..|+++.+++= +.-..|...-++..+++. ..++++.+..+..+..+.
T Consensus 88 vS~LTyn-p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~d--ER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 88 VSSLTYN-PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVD--ERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccceeeC-CCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEe--hhcceEEEEEEcCCccEE
Confidence 4578997 6777777777667777887788999999862 334457777677777764 345788777766554332
Q ss_pred Eee-------cCCcce---eEEEEEecCCCEEEEEeCCCcEEEEECCCCe---eEEecccCC-------CceEEEEEcCC
Q 011452 272 SFN-------HLLHRN---KKVDFIEQFNEKLLVKQENENLQILDVRNFE---LTEVSRTEF-------MTPSAFIFLYE 331 (485)
Q Consensus 272 tl~-------~~~~~~---~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---~~~~l~gh~-------~~v~avaFspd 331 (485)
.+. .-.+.+ ..+|+. +.++.|.+..+-..++|+.+..+. .......++ ..|+++.|.+.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d-~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWD-PVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred eccceEEeccccCCCCcCceeeecC-CCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 221 111112 278886 567888888888899998877443 122222332 24677778765
Q ss_pred CcEEEEEe--CCcEEEEeCCCcEEEEeecCCCCCC----CCCeeEEEECCCCCE
Q 011452 332 NQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHP----DCNTNNIYITSDQDL 379 (485)
Q Consensus 332 g~llaS~s--D~TIklWd~~G~ll~tl~gH~~~~~----~~~v~svafSpDG~~ 379 (485)
...|+.-| ++.+---|..|+.+..+.-+..+|. ...-..|+.-++|.+
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred CCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 55444444 7777777777887665554444332 222345555555543
No 442
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=70.13 E-value=1.9e+02 Score=32.54 Aligned_cols=228 Identities=9% Similarity=-0.006 Sum_probs=110.2
Q ss_pred ceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC------CcEEEeecCCCeEE--EEEcCC-cE
Q 011452 166 RCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD------SIYKVFDLKNYTML--YSISDK-NV 236 (485)
Q Consensus 166 ~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D------~tiKlWdl~~g~~l--~tl~~~-~V 236 (485)
.++.+...|..+++.....++-. ... ...+++ .+|++.+.|+.| +++-.+|..+.+=. -.+... .=
T Consensus 299 ~~~~ve~yd~~~~~w~~~a~m~~--~r~-~~~~~~--~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~ 373 (571)
T KOG4441|consen 299 SLRSVECYDPKTNEWSSLAPMPS--PRC-RVGVAV--LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD 373 (571)
T ss_pred ccceeEEecCCcCcEeecCCCCc--ccc-cccEEE--ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc
Confidence 34677777877775522111111 111 124666 378999999999 45556666554411 111111 11
Q ss_pred EEEEEcCCceEEEEEcCCC--CeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCC------CcEEEEECC
Q 011452 237 QEIKISPGIMLLIFTKASG--HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVR 308 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~--D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D------~tIkIWDv~ 308 (485)
-+++.-.|-..++++.+.. -.+|-.+|.++-+--..-. +......++-..-.+...++||.| .++..+|..
T Consensus 374 ~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 374 FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred ceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 1233334555555433311 1467778876644221111 111222222222223444556633 568999999
Q ss_pred CCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC-----cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEE-CCCCCEEE
Q 011452 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR-----TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLII 381 (485)
Q Consensus 309 tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~-----TIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDG~~La 381 (485)
+.+......--+.+...-+-..++.+.+-|+ |+ +|..+|.+......+..=... ...+.+ .-++++-|
T Consensus 453 t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~-----rs~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 453 TNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP-----RSAVGVVVLGGKLYA 527 (571)
T ss_pred CCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc-----cccccEEEECCEEEE
Confidence 9876444321111111123356788888887 76 478888864333332211111 111211 22566667
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 382 SYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
.|+.+-.. .=+||..||..+.+-
T Consensus 528 vGG~~~~~------~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 528 VGGFDGNN------NLNTVECYDPETDTW 550 (571)
T ss_pred EecccCcc------ccceeEEcCCCCCce
Confidence 76652111 135777777776653
No 443
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.40 E-value=32 Score=41.99 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 457 EDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 457 ~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.|..++.+..++.||+=++.++|++|++
T Consensus 243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 243 DPIRQITIDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred CcceeeEeccccceeeeeccCceEEEEEc
Confidence 48999999999999999999999999985
No 444
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=68.64 E-value=2.7e+02 Score=33.64 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=96.5
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEE---EeeC-CCEEEEEEee-cCCCCcccceeEEEEeEeccCCcCcccceeeec
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLF---YNKN-NDSLITVSVY-ASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE 190 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~---~spd-g~~Las~S~d-~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~ 190 (485)
-+++.|-.|=+.++.......+.+.|+- |..| +.+++.+-.. -++.-..-.+|.+-+..-..+++ ..+-++.
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L---~~v~e~~ 827 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL---ELVAETV 827 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce---eeeeeee
Confidence 4677777777777766665556555555 7777 5555543221 11111122223332222221332 1111222
Q ss_pred cccCceE-EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCceEEEEEcCCCCeeEEEE--ec
Q 011452 191 SLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKIL--SI 264 (485)
Q Consensus 191 ~~~~~~~-V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafS-pg~~ll~sss~~~D~tIklW--di 264 (485)
..+.|.+ ++| ||++|| +-...|+|+++.+.+.++.=. ..++..+.+. -|..++++ |..+.+.+. +-
T Consensus 828 v~Gav~aL~~f---ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~Vg---Dlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 828 VKGAVYALVEF---NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVG---DLMRSITLLQYKG 899 (1096)
T ss_pred eccceeehhhh---CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEe---eccceEEEEEEec
Confidence 2222333 456 799998 556899999999887665543 3467777777 47777765 333444444 33
Q ss_pred CCCeEEEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011452 265 EDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308 (485)
Q Consensus 265 ~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~ 308 (485)
..|...-.-+ -+..+..+|.+. +++..+.+-.++++.+--..
T Consensus 900 ~eg~f~evArD~~p~Wmtaveil--~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 900 DEGNFEEVARDYNPNWMTAVEIL--DDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred cCCceEEeehhhCccceeeEEEe--cCceEEeecccccEEEEEec
Confidence 3443433222 122334467664 46677777777888776544
No 445
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=66.19 E-value=3.5e+02 Score=33.98 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=43.4
Q ss_pred eEEEECCCCCEEEEEecCCCCCCCCcCCCCeE-EEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccc
Q 011452 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSI-NISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASR 447 (485)
Q Consensus 369 ~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI-klWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (485)
.+|+|+++|-+-+.-++ ...| +|=-+.|...+..|.|-...|.-.++. -|-|..-.+.
T Consensus 596 r~Iavg~~G~lyvaEsD-----------~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~------~cdcfs~~~~---- 654 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESD-----------GRRINRVRKLSTDGTISILAGAKSPCSCDVAA------CCDCFSLRDV---- 654 (1899)
T ss_pred hceeecCCceEEEEecc-----------chhhhheEEeccCceEEEecCCCCCCCccccc------CCccccccch----
Confidence 68999999999888663 1111 233334444556666644211100100 0223222210
Q ss_pred cccchhcccCCeEEEEEcCCCCEEEEec
Q 011452 448 IRSTVAEALEDITALFYDEDRNEIYTGN 475 (485)
Q Consensus 448 ~~~~~~~~l~~V~sl~fspDg~~LaSgs 475 (485)
..-...+....+||.+|||..++.-+
T Consensus 655 --~At~A~lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 655 --AATQAKLNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred --hhhccccCCcceEEECCCCcEEEecC
Confidence 00111234788999999999876543
No 446
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=63.09 E-value=22 Score=35.27 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=38.5
Q ss_pred CEEEEEeCCCeEEeeecc--cCcEEEEeecCCcccEEEEEEeeCCCEEEEE
Q 011452 106 DIVFALAQSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYNKNNDSLITV 154 (485)
Q Consensus 106 ~~ias~s~dgtiklW~~~--tG~~l~tl~g~~~~~i~sv~~spdg~~Las~ 154 (485)
|.|+.+.....|.+|+++ ..+.++++.- -+.|..+.|+..|++|+|-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccceEEEE
Confidence 788887888899999987 3557777654 3579999999999999984
No 447
>PHA03098 kelch-like protein; Provisional
Probab=62.82 E-value=2.3e+02 Score=30.84 Aligned_cols=191 Identities=9% Similarity=0.026 Sum_probs=92.2
Q ss_pred CCeEEEEeeCCC------cEEEeecCCCeEEEEEcC---C-cEEEEEEcCCceEEEEEcCCCC---eeEEEEecCCCeEE
Q 011452 204 NGKVLTYSAQDS------IYKVFDLKNYTMLYSISD---K-NVQEIKISPGIMLLIFTKASGH---VPLKILSIEDGTVL 270 (485)
Q Consensus 204 nG~~Las~s~D~------tiKlWdl~~g~~l~tl~~---~-~V~~VafSpg~~ll~sss~~~D---~tIklWdi~tG~~L 270 (485)
++++.+.|+.++ .+..+|..+.+-. .+.. . .-.+++.-.+..+++++ .+.. .++..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~~~~lyv~GG-~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVFNNRIYVIGG-IYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEECCEEEEEeC-CCCCEecceEEEEcCCCCcee
Confidence 567777777542 4667777766532 2221 1 11122222444444443 2211 35777888776533
Q ss_pred E--EeecCCcce-eEEEEEecCCCEEEEEeC--C----CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-C
Q 011452 271 K--SFNHLLHRN-KKVDFIEQFNEKLLVKQE--N----ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-N 340 (485)
Q Consensus 271 ~--tl~~~~~~~-~~V~f~~~~~~~lls~s~--D----~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D 340 (485)
. .+.. .+. ..++. .++...+.||. + ..+..||+.+.+-.....-....-...+...++++++.|+ +
T Consensus 372 ~~~~lp~--~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 447 (534)
T PHA03098 372 EEPPLIF--PRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGIS 447 (534)
T ss_pred eCCCcCc--CCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCcc
Confidence 2 2221 111 12332 23444455652 2 4688999998765443211111111123345788888776 3
Q ss_pred C--------cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 341 R--------TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 341 ~--------TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
. .+.++|.....-..+..-. .+......+.+ ++++.+-|+.+. .+..++|.++|..+.+-
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~~~~~~~~--~~~iyv~GG~~~------~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLN--FPRINASLCIF--NNKIYVVGGDKY------EYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCC--cccccceEEEE--CCEEEEEcCCcC------CcccceeEEEeCCCCEE
Confidence 2 3778887522222222111 11111122333 788888776520 11135788999887653
No 448
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=61.00 E-value=2.4e+02 Score=31.91 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=78.2
Q ss_pred cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE----e--CCCc----
Q 011452 232 SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK----Q--ENEN---- 301 (485)
Q Consensus 232 ~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~----s--~D~t---- 301 (485)
.+..+.++.|||++..++..+.+.+....+|-+..+..+ ..+...+....++ +.+..++.- . .|+.
T Consensus 58 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g~~---~~~~~~v~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 133 (620)
T COG1506 58 FGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGGLI---TKTAFGVSDARWS-PDGDRIAFLTAEGASKRDGGDHLF 133 (620)
T ss_pred cCCcccccccCCCCCEEEEEeccCCCcceEEEEecCCce---eeeecccccceeC-CCCCeEEEEecccccccCCceeee
Confidence 466788999999777777766444445555544332111 1111233344443 344444441 0 1221
Q ss_pred ---EEEEECCCC-e-----------eEEecccCCCceEEEEEcCCCcEEEEEe-CCc-------EEEEeCC-CcEEEEee
Q 011452 302 ---LQILDVRNF-E-----------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRT-------VAVWNFR-GELVTSFE 357 (485)
Q Consensus 302 ---IkIWDv~tg-~-----------~~~~l~gh~~~v~avaFspdg~llaS~s-D~T-------IklWd~~-G~ll~tl~ 357 (485)
+.+|....+ + ...........+..+++.+++..+++.. +.. ..+|... |++....
T Consensus 134 ~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 212 (620)
T COG1506 134 VDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLT- 212 (620)
T ss_pred ecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEc-
Confidence 223332222 1 2222334455777788888889888877 442 3344443 5544433
Q ss_pred cCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 358 DHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
..... +..++|.+||+.++-.+.
T Consensus 213 ~~~~~-----~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 213 PGEGS-----ISKLAFDADGKSIALLGT 235 (620)
T ss_pred CCCce-----eeeeeeCCCCCeeEEecc
Confidence 33333 788999999997777765
No 449
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=60.92 E-value=85 Score=36.47 Aligned_cols=101 Identities=11% Similarity=0.194 Sum_probs=62.9
Q ss_pred CCeEEEEeeCCCcEEEeecCC-------C-------------eEEEEEc-CCcEEEEEEc--CCceEEEEEcCCCCeeEE
Q 011452 204 NGKVLTYSAQDSIYKVFDLKN-------Y-------------TMLYSIS-DKNVQEIKIS--PGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~-------g-------------~~l~tl~-~~~V~~VafS--pg~~ll~sss~~~D~tIk 260 (485)
+..+|+.|.+||.|-+|..++ . ++.+.+. +..+|+++|+ ....+++.++.. ..|.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs--~~VT 190 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNS--QEVT 190 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCC--ceEE
Confidence 567888889999999996421 1 1123333 4579999999 666655554444 4555
Q ss_pred EEecCC--CeEE--EEeecCCcceeEEEEEecC--CC---EEEEEeCCCcEEEEEC
Q 011452 261 ILSIED--GTVL--KSFNHLLHRNKKVDFIEQF--NE---KLLVKQENENLQILDV 307 (485)
Q Consensus 261 lWdi~t--G~~L--~tl~~~~~~~~~V~f~~~~--~~---~lls~s~D~tIkIWDv 307 (485)
|+-..- .+.- ... .|.|.+-+|.|..-+ +. ++++++-.|++-+|++
T Consensus 191 VFaf~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 554322 1211 111 256788899997533 22 6666788888888777
No 450
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=60.82 E-value=37 Score=33.71 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=41.8
Q ss_pred ceEEEEEcCCCcEEEEEeCCcEEEEeCC---CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 322 TPSAFIFLYENQLFLTFRNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 322 ~v~avaFspdg~llaS~sD~TIklWd~~---G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.+.++.=++..-+|++.+...|.+|++. .+++.+|.-- +. |..++.+.-|+||++==.
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~-----V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GR-----VLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hh-----eeEEEeccccceEEEEEe
Confidence 4555555554566666667889999985 4567777643 22 899999999999999643
No 451
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=60.44 E-value=2.3e+02 Score=29.96 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=94.6
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecC------CCe-EEEEeecC-----CcceeEEEEEe------cCC-----C
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIE------DGT-VLKSFNHL-----LHRNKKVDFIE------QFN-----E 291 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~------tG~-~L~tl~~~-----~~~~~~V~f~~------~~~-----~ 291 (485)
+=|.|+|+|++.+-++... -++..|+|.. ..+ ++-++..- ......+.|.. ..+ .
T Consensus 24 N~WGia~~p~~~~WVadng--T~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTG--TGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCC--cceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 4578999987766666433 3678888875 222 23343310 01223455531 111 2
Q ss_pred EEEEEeCCCcEEEEECCCCee------EEecccCCCceE-EEEEc--CCCcEEEEEe--CCcEEEEeCCCcEEE---Eee
Q 011452 292 KLLVKQENENLQILDVRNFEL------TEVSRTEFMTPS-AFIFL--YENQLFLTFR--NRTVAVWNFRGELVT---SFE 357 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~tg~~------~~~l~gh~~~v~-avaFs--pdg~llaS~s--D~TIklWd~~G~ll~---tl~ 357 (485)
.++..+||+||-=|...-+.. +..-.+-...|+ -+|+- ..+.+|-.+. +++|.++|-+-..+. .|.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 357788999999998543322 212112223333 24443 3344444444 899999998733332 233
Q ss_pred cCCCCCCC--CCeeEEEECCCCCEEEEEecCCCC--CCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 358 DHLLWHPD--CNTNNIYITSDQDLIISYCKADSD--DPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 358 gH~~~~~~--~~v~svafSpDG~~LaS~s~d~~~--d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
+-.....- -+|..| .|++.++|.+.+.+ |...+.--|-|.++|. .|+.++.+.
T Consensus 182 DP~iPagyAPFnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~a 238 (336)
T TIGR03118 182 DPALPAGYAPFNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVA 238 (336)
T ss_pred CCCCCCCCCCcceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEec
Confidence 32211000 012222 58899999986532 3333334489999996 499999983
No 452
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=59.17 E-value=0.82 Score=50.04 Aligned_cols=150 Identities=13% Similarity=0.164 Sum_probs=92.2
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEE-cCCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
|++.-|+-+..+-+++.+|-+ |+....+ ....--++++- .+..+|+-+.. .+|+.|||+.+-. -.++..-..+.
T Consensus 44 ~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek--~~piylwd~n~ey-tqqLE~gg~~s 119 (615)
T KOG2247|consen 44 PEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEK--TGPIYLWDVNSEY-TQQLESGGTSS 119 (615)
T ss_pred cCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhc--CCCeeechhhhhh-HHHHhccCcch
Confidence 566667778889999999943 4433222 12222233333 34444444333 3799999986522 22222100111
Q ss_pred eE-EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEee
Q 011452 281 KK-VDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFE 357 (485)
Q Consensus 281 ~~-V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~ 357 (485)
.+ .+| ++....++++-.-++++|++-.+.+.+-++..|+-++..+++.++++.+.-+.|.++.+=...|+-....+
T Consensus 120 ~sll~w-sKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qegeta~lte 196 (615)
T KOG2247|consen 120 KSLLAW-SKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGETASLTE 196 (615)
T ss_pred HHHHhh-ccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhhhccceeeeee
Confidence 11 223 24344566666889999999999888777766999999999999998766555887766665566544443
No 453
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=59.00 E-value=21 Score=26.72 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCC---EEEEecCCCcEEEccC
Q 011452 458 DITALFYDEDRN---EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 458 ~V~sl~fspDg~---~LaSgs~DgtVklWd~ 485 (485)
.|+++.|||+.- .|+-+-.-+-|+|+|.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~ 32 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDT 32 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEc
Confidence 688999998554 8998888999999984
No 454
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=58.48 E-value=30 Score=25.90 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=23.0
Q ss_pred ceeEEEEEecCC--CEEEEEeCCCcEEEEECCC
Q 011452 279 RNKKVDFIEQFN--EKLLVKQENENLQILDVRN 309 (485)
Q Consensus 279 ~~~~V~f~~~~~--~~lls~s~D~tIkIWDv~t 309 (485)
.++.+.|+|..+ +.|+.+-.-+-|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 467889984333 4555666779999999995
No 455
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=58.18 E-value=2.3e+02 Score=29.32 Aligned_cols=107 Identities=13% Similarity=0.005 Sum_probs=63.8
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~ 278 (485)
-||++.+. ..|+.+.-.|.++++.+.+... ..+..=.+-.++++.++. .++.+...|..+|+++-+++....
T Consensus 67 ~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~---~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 67 GDGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGS---WDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred eCCeEEEe-cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEec---ccceEEEEECCCCcEEEEEecCCC
Confidence 36666664 5577777777777775543321 122221222267777663 335788889889999998885430
Q ss_pred -ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe
Q 011452 279 -RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV 315 (485)
Q Consensus 279 -~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~ 315 (485)
...+-.. ..++.+...+.|+.+.-.|..||+.+-.
T Consensus 143 ~~~~~~~v--~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 143 PYYASPPV--VGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred eEEecCcE--EcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 1111111 1245555556889998889888887544
No 456
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=57.50 E-value=1.9e+02 Score=27.96 Aligned_cols=29 Identities=21% Similarity=0.512 Sum_probs=18.6
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
+..|+ |||..=..++ +|.||+=| ..|..|
T Consensus 147 vk~vy--~dG~qet~y~------------~gr~r~kd-~~g~~~ 175 (179)
T PF07202_consen 147 VKTVY--PDGRQETRYA------------SGRVRIKD-KDGNVI 175 (179)
T ss_pred EEEEe--cCCCEEEEeC------------CCcEEEec-CCCCEE
Confidence 44443 5776666665 58898888 447654
No 457
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=57.26 E-value=1.6e+02 Score=30.35 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=57.5
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe---CC----cEEEEeCCCcEEEEeecCCCCCCCCCeeEEE
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR---NR----TVAVWNFRGELVTSFEDHLLWHPDCNTNNIY 372 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s---D~----TIklWd~~G~ll~tl~gH~~~~~~~~v~sva 372 (485)
..|.+||..+.+-.....+=.+.|.++.|..+.++++.|. ++ .+..||+...-..++.+-..-...+.|..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 4689999999888877777778999999999999999886 33 6889999877776776632000112266665
Q ss_pred E-CCCCCEEE
Q 011452 373 I-TSDQDLII 381 (485)
Q Consensus 373 f-SpDG~~La 381 (485)
+ +.|+.-+.
T Consensus 96 ~~~~d~~~~~ 105 (281)
T PF12768_consen 96 FISNDGSNFW 105 (281)
T ss_pred eeccCCceEE
Confidence 5 33554343
No 458
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.13 E-value=2.4e+02 Score=31.45 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=42.0
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSI---SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE 265 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~ 265 (485)
.|-||+.|-++++.-| +-+.=|-++... ..-++ ....|.+|+||||.++++-...+ .+|.+.+..
T Consensus 27 gvFfDDaNkqlfavrS--ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~--~~v~f~nf~ 96 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRS--GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTS--KTVDFCNFI 96 (657)
T ss_pred ceeeccCcceEEEEec--CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecC--ceEEEEecC
Confidence 4677776666666544 344445544322 11122 12489999999988888887654 899999873
No 459
>PHA02790 Kelch-like protein; Provisional
Probab=55.67 E-value=3.1e+02 Score=29.93 Aligned_cols=190 Identities=12% Similarity=0.015 Sum_probs=93.3
Q ss_pred CCeEEEEeeCCC-----cEEEeecCCCeEE--EEEcCCc-EEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE--Ee
Q 011452 204 NGKVLTYSAQDS-----IYKVFDLKNYTML--YSISDKN-VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK--SF 273 (485)
Q Consensus 204 nG~~Las~s~D~-----tiKlWdl~~g~~l--~tl~~~~-V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~--tl 273 (485)
++.+.+.|+.++ ++-.+|..+.+-. ..+.... -.+++.-.|...++++ .+...++..||..+++-.. .+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG-~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGG-LPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECC-cCCCCceEEEECCCCeEEECCCC
Confidence 567777777543 4556777665532 1222111 1122222444445443 2233578889987664332 23
Q ss_pred ecCCccee-EEEEEecCCCEEEEEeCC---CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC
Q 011452 274 NHLLHRNK-KVDFIEQFNEKLLVKQEN---ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 349 (485)
Q Consensus 274 ~~~~~~~~-~V~f~~~~~~~lls~s~D---~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~ 349 (485)
.. .+.. .++- .+|...++||.+ .++..||.++.+-.....-....-...+-..+|++.+.|+ .+..+|.+
T Consensus 350 ~~--~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG--~~e~ydp~ 423 (480)
T PHA02790 350 LK--PRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR--NAEFYCES 423 (480)
T ss_pred CC--CCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC--ceEEecCC
Confidence 21 1111 2222 234444556644 4688999998776543211111111223356788888774 56788885
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
...-..+..- ..+......++ -+|++.+.|+.+. .+.-.+|..+|..+++-
T Consensus 424 ~~~W~~~~~m--~~~r~~~~~~v--~~~~IYviGG~~~------~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 424 SNTWTLIDDP--IYPRDNPELII--VDNKLLLIGGFYR------GSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CCcEeEcCCC--CCCccccEEEE--ECCEEEEECCcCC------CcccceEEEEECCCCeE
Confidence 3222222211 11111122222 3778888887520 01125688888876653
No 460
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=53.43 E-value=4.9e+02 Score=31.60 Aligned_cols=145 Identities=12% Similarity=0.052 Sum_probs=89.0
Q ss_pred EEEEeCCCCeEEEEeeC----------CCcEEEeecCCCeEEEEEcCCcEEEEEEc---CCceEEEEEcCCCCeeEEEEe
Q 011452 197 FVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYSISDKNVQEIKIS---PGIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~----------D~tiKlWdl~~g~~l~tl~~~~V~~VafS---pg~~ll~sss~~~D~tIklWd 263 (485)
++.|.+..+.+++-|.. -|-|-|+....++.|..++...|.....+ =+++++++= . ..|+|.+
T Consensus 779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~I-n---~~vrLye 854 (1096)
T KOG1897|consen 779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGI-N---QSVRLYE 854 (1096)
T ss_pred eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEec-C---cEEEEEE
Confidence 45685433667665520 12233333333222223332334443333 156666542 2 5899999
Q ss_pred cCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe--CCCcEEEEECCCCeeEEeccc-CCCceEEEEEcCCCcEEEEEeC
Q 011452 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRT-EFMTPSAFIFLYENQLFLTFRN 340 (485)
Q Consensus 264 i~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~tg~~~~~l~g-h~~~v~avaFspdg~llaS~sD 340 (485)
..++++|+.=..|..++..++.. --++.++++- .--|+-.++-..|...++-+. |..|..++.+..+-.+|.+-.+
T Consensus 855 ~t~~~eLr~e~~~~~~~~aL~l~-v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~ 933 (1096)
T KOG1897|consen 855 WTTERELRIECNISNPIIALDLQ-VKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENS 933 (1096)
T ss_pred ccccceehhhhcccCCeEEEEEE-ecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeeccc
Confidence 99998888877777777777765 3477888885 455566666666778777654 6679999999888777765556
Q ss_pred CcEEEE
Q 011452 341 RTVAVW 346 (485)
Q Consensus 341 ~TIklW 346 (485)
+.+.+-
T Consensus 934 gNlf~v 939 (1096)
T KOG1897|consen 934 GNLFTV 939 (1096)
T ss_pred ccEEEE
Confidence 655544
No 461
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=53.26 E-value=2.8e+02 Score=28.79 Aligned_cols=121 Identities=10% Similarity=0.046 Sum_probs=65.7
Q ss_pred eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecC
Q 011452 280 NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDH 359 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH 359 (485)
+..+..+ +++.++++++..+-.+-||--...-....+.-...+.++.|.||+.+.+.+..+.|+.=+. +.-..++..+
T Consensus 147 ~~~~~r~-~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~-~~~~~~w~~~ 224 (302)
T PF14870_consen 147 INDITRS-SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDD-PDDGETWSEP 224 (302)
T ss_dssp EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE--TTEEEEE---
T ss_pred eEeEEEC-CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccC-CCCccccccc
Confidence 3444443 5666777777778888998654333333344567999999999999988777888887772 1112233322
Q ss_pred CCC--CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 360 LLW--HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 360 ~~~--~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
... ...-.+.++++.|++++.|+|.. |++-... .-||-=++-+
T Consensus 225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg~------------G~l~~S~-DgGktW~~~~ 269 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRPPNEIWAVGGS------------GTLLVST-DGGKTWQKDR 269 (302)
T ss_dssp B-TTSS--S-EEEEEESSSS-EEEEEST------------T-EEEES-STTSS-EE-G
T ss_pred cCCcccCceeeEEEEecCCCCEEEEeCC------------ccEEEeC-CCCccceECc
Confidence 211 01122789999999999998874 6665443 4465444443
No 462
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=52.41 E-value=34 Score=29.25 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=23.9
Q ss_pred cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 342 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 342 TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
-+--||...+.++.|-+-... -|.|++|||++.|+-+
T Consensus 38 Rll~ydp~t~~~~vl~~~L~f-----pNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 38 RLLRYDPSTKETTVLLDGLYF-----PNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEEEETTTTEEEEEEEEESS-----EEEEEE-TTSSEEEEE
T ss_pred CEEEEECCCCeEEEehhCCCc-----cCeEEEcCCCCEEEEE
Confidence 334788875545444444444 6899999999977664
No 463
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=51.18 E-value=2.8e+02 Score=30.64 Aligned_cols=127 Identities=9% Similarity=0.070 Sum_probs=58.8
Q ss_pred eeEEEEecCCCeEEEEeec-CCcc-eeEEEEEe-cCCCEEEEE-eCCCcEEEEEC-CCCe-----eEEeccc----C---
Q 011452 257 VPLKILSIEDGTVLKSFNH-LLHR-NKKVDFIE-QFNEKLLVK-QENENLQILDV-RNFE-----LTEVSRT----E--- 319 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~-~~~~-~~~V~f~~-~~~~~lls~-s~D~tIkIWDv-~tg~-----~~~~l~g----h--- 319 (485)
.+|.+||+++.+.++++.- -.+. ..+|.|.- |....=.++ --..+|-+|-- +.++ .+++... -
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence 6899999999999999972 2222 34788852 222222222 23334433322 3332 2222110 0
Q ss_pred ---------CCceEEEEEcCCCcEEEEEe--CCcEEEEeCC--Cc--EEEEee-cCCC---CCCC-------CCeeEEEE
Q 011452 320 ---------FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE--LVTSFE-DHLL---WHPD-------CNTNNIYI 373 (485)
Q Consensus 320 ---------~~~v~avaFspdg~llaS~s--D~TIklWd~~--G~--ll~tl~-gH~~---~~~~-------~~v~svaf 373 (485)
..-|+.+..|.|.+.|--+. +|.|+.+|++ -+ ++.... |-.. .++. +...-|.+
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvql 381 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQL 381 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEE
Confidence 13467788888888765554 9999999984 33 333211 1110 0000 11256889
Q ss_pred CCCCCEEEEE
Q 011452 374 TSDQDLIISY 383 (485)
Q Consensus 374 SpDG~~LaS~ 383 (485)
|-||+.|--.
T Consensus 382 S~DGkRlYvT 391 (461)
T PF05694_consen 382 SLDGKRLYVT 391 (461)
T ss_dssp -TTSSEEEEE
T ss_pred ccCCeEEEEE
Confidence 9999988654
No 464
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.87 E-value=2.4e+02 Score=32.97 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=44.7
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec-----cCCcCcc------------cceeeeccccCceEEEE
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR-----RGKPDAG------------FALFESESLKWPGFVEF 200 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~-----~G~~~~~------------~~lf~~~~~~~~~~V~F 200 (485)
-|..|.+||+|..||.++. +.+-|-+++ .|.+..+ ..+|......-+.-|.|
T Consensus 86 ~v~~i~~n~~g~~lal~G~-----------~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~W 154 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGP-----------RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRW 154 (717)
T ss_pred eEEEEEECCCCCEEEEEcC-----------CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEE
Confidence 4999999999999998764 223333332 1111111 01333222222335777
Q ss_pred eC--CCCeEEEEeeCCCcEEEeecCCCe
Q 011452 201 DD--VNGKVLTYSAQDSIYKVFDLKNYT 226 (485)
Q Consensus 201 s~--pnG~~Las~s~D~tiKlWdl~~g~ 226 (485)
.| +++..|+-=..|+++|++|+...+
T Consensus 155 hP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 155 HPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred cCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 62 234566666679999999997544
No 465
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=50.81 E-value=44 Score=22.03 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=21.6
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEe
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVF 220 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlW 220 (485)
..|..|+.+ ++|.++++-+....|+++
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 457789998 799999998877777654
No 466
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=48.29 E-value=1.7e+02 Score=31.01 Aligned_cols=97 Identities=12% Similarity=0.196 Sum_probs=63.8
Q ss_pred EEECCCCeeEEec--ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc--EEEEeecCCCCCCCCCeeEEEECCCC
Q 011452 304 ILDVRNFELTEVS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQ 377 (485)
Q Consensus 304 IWDv~tg~~~~~l--~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDG 377 (485)
++|+.+++.+..- -.|. +. =+||++.++-+ .+.|.-+|.+ |+ .+..+.|. .+.++|. |
T Consensus 189 vidv~s~evl~~GLsmPhS--PR----WhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~--------~rGL~f~--G 252 (335)
T TIGR03032 189 VIDIPSGEVVASGLSMPHS--PR----WYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGF--------TRGLAFA--G 252 (335)
T ss_pred EEEeCCCCEEEcCccCCcC--Cc----EeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCC--------Cccccee--C
Confidence 4788888765431 1121 11 24899999988 9999999996 85 56666553 6789998 8
Q ss_pred CEEEEEecCCCCC---------CCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 378 DLIISYCKADSDD---------PLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 378 ~~LaS~s~d~~~d---------~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
++++.+-..+-++ ..-....+-|.+-|+.||..++.|+=
T Consensus 253 ~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~f 300 (335)
T TIGR03032 253 DFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRF 300 (335)
T ss_pred CEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEe
Confidence 8886654322111 00111125588899999999998864
No 467
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=46.68 E-value=44 Score=21.96 Aligned_cols=25 Identities=16% Similarity=0.184 Sum_probs=21.2
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEE
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRIC 129 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~ 129 (485)
+..|+.++.+|.+...|.++|+.+=
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 4578889999999999999888764
No 468
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=46.54 E-value=52 Score=21.66 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCcEEEEEe-CCcEEE
Q 011452 321 MTPSAFIFLYENQLFLTFR-NRTVAV 345 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s-D~TIkl 345 (485)
..|..+++.++|+++++-+ +..|++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence 3578899999999999888 777765
No 469
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=45.90 E-value=4.2e+02 Score=28.63 Aligned_cols=192 Identities=15% Similarity=0.178 Sum_probs=101.6
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEE--eeCCCE--EEEEEeecCCCCcccceeEEEEeEec--cC
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFY--NKNNDS--LITVSVYASDNFSSLRCRSTRIEYIR--RG 178 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~--spdg~~--Las~S~d~~~d~stL~~~t~~lw~i~--~G 178 (485)
+.+|+....++=+.+||++ |+.+..+..+.-+.| .|.+ .-+|+. ||.+|.-.... .+++|+.|. +|
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNV-Dvrygf~l~g~~vDlavas~R~~g~------n~l~~f~id~~~g 139 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNV-DVRYGFPLNGKTVDLAVASDRSDGR------NSLRLFRIDPDTG 139 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEE-EEEEEEEETTEEEEEEEEEE-CCCT-------EEEEEEEETTTT
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecCCCccee-eeecceecCCceEEEEEEecCcCCC------CeEEEEEecCCCC
Confidence 5678888888889999988 999998864322222 2222 235665 56666421111 267777763 34
Q ss_pred CcCc----ccceeeeccccCceEEEE--eCCCCeEEEE-eeCCCcEEEeecC---CC----eEEEEEc-CCcEEEEEEcC
Q 011452 179 KPDA----GFALFESESLKWPGFVEF--DDVNGKVLTY-SAQDSIYKVFDLK---NY----TMLYSIS-DKNVQEIKISP 243 (485)
Q Consensus 179 ~~~~----~~~lf~~~~~~~~~~V~F--s~pnG~~Las-~s~D~tiKlWdl~---~g----~~l~tl~-~~~V~~VafSp 243 (485)
.+.. ..++.. .+.-+..+++ ++.+|++.|. ...++.+..|-|. +| ++++.|. ...+..++.-+
T Consensus 140 ~L~~v~~~~~p~~~--~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDD 217 (381)
T PF02333_consen 140 ELTDVTDPAAPIAT--DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDD 217 (381)
T ss_dssp EEEE-CBTTC-EE---SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEET
T ss_pred cceEcCCCCccccc--ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEec
Confidence 4311 111211 1222344554 4456775554 4567877766653 44 3567776 46788899886
Q ss_pred -CceEEEEEcCCCCeeEEEEecC-----CCeEEEEeec--CCcceeEEEEEec-C-CCEEEEE-eCCCcEEEEECCC
Q 011452 244 -GIMLLIFTKASGHVPLKILSIE-----DGTVLKSFNH--LLHRNKKVDFIEQ-F-NEKLLVK-QENENLQILDVRN 309 (485)
Q Consensus 244 -g~~ll~sss~~~D~tIklWdi~-----tG~~L~tl~~--~~~~~~~V~f~~~-~-~~~lls~-s~D~tIkIWDv~t 309 (485)
.+.|.++- .+.-|.-++.+ +++.+....+ +..-+..|+.... + .++|+++ |.|++.-|||.+.
T Consensus 218 e~g~LYvgE---E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 218 ETGRLYVGE---EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTTEEEEEE---TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ccCCEEEec---CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 66666652 23344444544 3444444432 3345566776432 2 3577776 6999999999884
No 470
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.53 E-value=5.6e+02 Score=29.97 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=25.9
Q ss_pred cceeEEEEEec--CCCEEEEEeCCCcEEEEECCCC
Q 011452 278 HRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNF 310 (485)
Q Consensus 278 ~~~~~V~f~~~--~~~~lls~s~D~tIkIWDv~tg 310 (485)
..+..|.|.|- .+..|++=..|++||+||+...
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 46678999843 3578888789999999999753
No 471
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=44.41 E-value=4.7e+02 Score=30.09 Aligned_cols=79 Identities=14% Similarity=0.285 Sum_probs=45.8
Q ss_pred eecCCcceeEEEEEecCCCEEEEEe---CCCcEEEEECCCCeeEEecccCCCceEEEEEcCC----CcEEEEEe-CCcEE
Q 011452 273 FNHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE----NQLFLTFR-NRTVA 344 (485)
Q Consensus 273 l~~~~~~~~~V~f~~~~~~~lls~s---~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd----g~llaS~s-D~TIk 344 (485)
|....|.+..++|- ||.+++-.. .+|.+|.=|-. + -|.+..|..+.|.|- --.|+.-. .+-|-
T Consensus 15 L~qAiHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGds~------v-iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVt 85 (671)
T PF15390_consen 15 LHQAIHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGDSK------V-IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVT 85 (671)
T ss_pred HHhhhccccceEec--CCCEEEEEeeeeeCCccccCCcc------E-eeccceeeeeeecCcccCCCCceEEEeccceEE
Confidence 44445777888884 454443331 33444432211 1 267778999999885 32444455 88999
Q ss_pred EEeCC------CcEEEEeecCC
Q 011452 345 VWNFR------GELVTSFEDHL 360 (485)
Q Consensus 345 lWd~~------G~ll~tl~gH~ 360 (485)
+|.+. ++++.+.+.+.
T Consensus 86 VWqL~~s~~e~~K~l~sQtcEi 107 (671)
T PF15390_consen 86 VWQLCPSTTERNKLLMSQTCEI 107 (671)
T ss_pred EEEeccCccccccceeeeeeec
Confidence 99862 45555554443
No 472
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=43.75 E-value=3.8e+02 Score=27.55 Aligned_cols=96 Identities=16% Similarity=0.082 Sum_probs=59.9
Q ss_pred ccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee------CCCcEEEeecCCCeEEEEEcC----
Q 011452 164 SLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA------QDSIYKVFDLKNYTMLYSISD---- 233 (485)
Q Consensus 164 tL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s------~D~tiKlWdl~~g~~l~tl~~---- 233 (485)
.|.|..+-+||+...+... +...-.+.+..+.|. .+.++++.|. ....+-.||+++.+- .++.+
T Consensus 12 sL~C~~lC~yd~~~~qW~~----~g~~i~G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~ 85 (281)
T PF12768_consen 12 SLPCPGLCLYDTDNSQWSS----PGNGISGTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSN 85 (281)
T ss_pred CcCCCEEEEEECCCCEeec----CCCCceEEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccc
Confidence 5789999999987777632 222223445578886 4778888874 466788999887653 22222
Q ss_pred ---CcEEEEEEc--C-CceEEEEEcCCCCeeEEEEecC
Q 011452 234 ---KNVQEIKIS--P-GIMLLIFTKASGHVPLKILSIE 265 (485)
Q Consensus 234 ---~~V~~VafS--p-g~~ll~sss~~~D~tIklWdi~ 265 (485)
.+|..+.+. + +...++..+..++..|.-||=.
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 468887774 3 3344444334444567777643
No 473
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=43.02 E-value=37 Score=23.73 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=22.0
Q ss_pred EEEEEeCCCeEEeeecccCcEEEEeec
Q 011452 107 IVFALAQSGVCAAFCRETNQRICFLNV 133 (485)
Q Consensus 107 ~ias~s~dgtiklW~~~tG~~l~tl~g 133 (485)
.|+.++.||.+...|.+||+.+=..+.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466679999999999999998765543
No 474
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=42.47 E-value=5.1e+02 Score=28.68 Aligned_cols=192 Identities=14% Similarity=0.103 Sum_probs=88.3
Q ss_pred CeEEEEeeCCCcEEEeecC----CCeEEEEEcCC------cE-E--EEEEcCCceEEEEEcCCCC----eeEEEEecCCC
Q 011452 205 GKVLTYSAQDSIYKVFDLK----NYTMLYSISDK------NV-Q--EIKISPGIMLLIFTKASGH----VPLKILSIEDG 267 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~----~g~~l~tl~~~------~V-~--~VafSpg~~ll~sss~~~D----~tIklWdi~tG 267 (485)
..+++.|=..+.|-|.|++ .-++.+++... .+ . .+---|++.+++++-++.+ +-+-+.|-+|-
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 3455556578889999987 34566666421 11 1 1111265533344332222 45667777776
Q ss_pred eEEEEeecCC---cceeEEEEEecCCCEEEEEe--------------------CCCcEEEEECCCCeeEEecc-cC-CCc
Q 011452 268 TVLKSFNHLL---HRNKKVDFIEQFNEKLLVKQ--------------------ENENLQILDVRNFELTEVSR-TE-FMT 322 (485)
Q Consensus 268 ~~L~tl~~~~---~~~~~V~f~~~~~~~lls~s--------------------~D~tIkIWDv~tg~~~~~l~-gh-~~~ 322 (485)
+++..-.... .--..+.+. |--..+++++ ..+++.+||+.+.+.++++. |. ...
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~q-pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQ-PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp -EEEE--SB-TT------EEEE-TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred cccceeccCCCCCCCCCCeEEc-CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 6665554211 111233333 2233444443 35899999999999999873 22 235
Q ss_pred eEEEEEcC--CCcE-EEEEe-CCcEEEEeC-C-Cc----EEEEeec--CCCCCC----------CCCeeEEEECCCCCEE
Q 011452 323 PSAFIFLY--ENQL-FLTFR-NRTVAVWNF-R-GE----LVTSFED--HLLWHP----------DCNTNNIYITSDQDLI 380 (485)
Q Consensus 323 v~avaFsp--dg~l-laS~s-D~TIklWd~-~-G~----ll~tl~g--H~~~~~----------~~~v~svafSpDG~~L 380 (485)
+-.|.|.. +... |+.+. ..+|-+|-- + |+ -+-++.. ...|.. -..+..|.+|.|.++|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL 326 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL 326 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence 77788854 4444 34333 556555544 2 44 2333321 112210 0227899999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
--.+. -+|.||-+||..
T Consensus 327 Yvs~W----------~~GdvrqYDISD 343 (461)
T PF05694_consen 327 YVSNW----------LHGDVRQYDISD 343 (461)
T ss_dssp EEEET----------TTTEEEEEE-SS
T ss_pred EEEcc----------cCCcEEEEecCC
Confidence 99887 379999999964
No 475
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=42.26 E-value=4.7e+02 Score=28.22 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=72.4
Q ss_pred CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEE---ecCCCE--EEEEe--CC--CcEEEEEC--CCCe
Q 011452 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI---EQFNEK--LLVKQ--EN--ENLQILDV--RNFE 311 (485)
Q Consensus 243 pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~---~~~~~~--lls~s--~D--~tIkIWDv--~tg~ 311 (485)
|...++++.. ...-+.++|+ +|+.++.+.. ++...|+.. ...+++ |++.+ .+ .+|+||-+ .++.
T Consensus 66 p~kSlIigTd--K~~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 66 PAKSLIIGTD--KKGGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp GGG-EEEEEE--TTTEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred cccceEEEEe--CCCCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 4444444432 2357889998 7899998863 455555542 122333 44554 22 68999955 4676
Q ss_pred eEEecc------cCCCceEEEEE--cC-CCcEEEEEe--CCcEEEEeC----CC----cEEEEeecCCCCCCCCCeeEEE
Q 011452 312 LTEVSR------TEFMTPSAFIF--LY-ENQLFLTFR--NRTVAVWNF----RG----ELVTSFEDHLLWHPDCNTNNIY 372 (485)
Q Consensus 312 ~~~~l~------gh~~~v~avaF--sp-dg~llaS~s--D~TIklWd~----~G----~ll~tl~gH~~~~~~~~v~sva 372 (485)
+..+.. .....++.+++ +| +|++.|-.. +|.+..|-+ +| +++++|..-. .+..++
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s------Q~EGCV 214 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS------QPEGCV 214 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-------EEEEE
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC------cceEEE
Confidence 644321 12235788887 33 577655443 898887765 14 4688887532 267888
Q ss_pred ECCCCCEEEEEe
Q 011452 373 ITSDQDLIISYC 384 (485)
Q Consensus 373 fSpDG~~LaS~s 384 (485)
......+|--+=
T Consensus 215 VDDe~g~LYvgE 226 (381)
T PF02333_consen 215 VDDETGRLYVGE 226 (381)
T ss_dssp EETTTTEEEEEE
T ss_pred EecccCCEEEec
Confidence 877777777654
No 476
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.14 E-value=4.1e+02 Score=27.40 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=63.4
Q ss_pred EEECCCCeeEEecccCC--------CceEEEEEcCCCcEE-EEEe-CCcEEEEe--CC-CcE-----EEEeecCCCC---
Q 011452 304 ILDVRNFELTEVSRTEF--------MTPSAFIFLYENQLF-LTFR-NRTVAVWN--FR-GEL-----VTSFEDHLLW--- 362 (485)
Q Consensus 304 IWDv~tg~~~~~l~gh~--------~~v~avaFspdg~ll-aS~s-D~TIklWd--~~-G~l-----l~tl~gH~~~--- 362 (485)
+.....|++...+.+|+ .-.++++|+-|.+.| ..-+ +-+|.-|| .. |.+ +..|+..+..
T Consensus 133 ~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~ 212 (310)
T KOG4499|consen 133 DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL 212 (310)
T ss_pred cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC
Confidence 33344566666666664 234567776666554 4556 88999999 33 543 4445442221
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
-|+ .+++..+|.+.+..-. -++|...|..|||.|.+++=.+
T Consensus 213 ~PD----Gm~ID~eG~L~Va~~n-----------g~~V~~~dp~tGK~L~eiklPt 253 (310)
T KOG4499|consen 213 EPD----GMTIDTEGNLYVATFN-----------GGTVQKVDPTTGKILLEIKLPT 253 (310)
T ss_pred CCC----cceEccCCcEEEEEec-----------CcEEEEECCCCCcEEEEEEcCC
Confidence 122 4566678877665443 5899999999999999997655
No 477
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=42.12 E-value=3.6e+02 Score=30.65 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=73.0
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEecC------CCEEEEEeCCCcEEEEECC-CCeeEEecccCCCceEEEEEc
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF------NEKLLVKQENENLQILDVR-NFELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~------~~~lls~s~D~tIkIWDv~-tg~~~~~l~gh~~~v~avaFs 329 (485)
..+.=.||+.|+++-+..-|-.- -|.|.|.+ +++.++|=.|..|--.|.+ .|..+.+-. -.+.+..--||
T Consensus 490 ~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fs 566 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFS 566 (776)
T ss_pred ccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhcccccccc
Confidence 45555699999999887754222 56664321 3566777444444444654 454333321 11122222233
Q ss_pred ----CCCcEEEEEe-CCcEEEEeCCCcEEEE-eecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 330 ----YENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 330 ----pdg~llaS~s-D~TIklWd~~G~ll~t-l~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
-++-++|.+| -|-|||+|-=|..-.| |.+-... |..|..+.+|+.|+..|+
T Consensus 567 s~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~a-----Ik~idvta~Gk~ilaTCk 623 (776)
T COG5167 567 SGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDA-----IKHIDVTANGKHILATCK 623 (776)
T ss_pred ccccccCceEEEecCCCceeeehhhcchhhhcCcccccc-----eeeeEeecCCcEEEEeec
Confidence 3455788888 9999999975554333 3332223 888999999999999996
No 478
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=42.02 E-value=4.9e+02 Score=28.36 Aligned_cols=139 Identities=16% Similarity=0.355 Sum_probs=85.0
Q ss_pred CCeEEEEeeCCCcEEEeecCCCe-----EEEEEc-CCcEEEEEEc---C---CceEEEEEcCCCCeeEEEEec--CCCe-
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYT-----MLYSIS-DKNVQEIKIS---P---GIMLLIFTKASGHVPLKILSI--EDGT- 268 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~-----~l~tl~-~~~V~~VafS---p---g~~ll~sss~~~D~tIklWdi--~tG~- 268 (485)
+...|+.||..|.+||++...+. ++.... ..+|..|+.- + +..||+-.+ +.+-|+.+ .+|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP----~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHP----RKLSVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecC----CEEEEEEEEecCCCc
Confidence 44678889999999999986433 233322 4566555432 1 334444322 34445544 1222
Q ss_pred ------EEE-EeecCCcce-eEEEEEecCC-----CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEE
Q 011452 269 ------VLK-SFNHLLHRN-KKVDFIEQFN-----EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF 335 (485)
Q Consensus 269 ------~L~-tl~~~~~~~-~~V~f~~~~~-----~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ll 335 (485)
.|. -++|++.+. .....- |+| +.+.+=+.||++.+++-++--..+.+.+ +--|-.++|.|.-..|
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G-~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCG-PFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSF 189 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEE-ECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEE
Confidence 122 233333322 233332 333 3555568999999999887666666655 7788889999999999
Q ss_pred EEEe-CCcEEEEeC
Q 011452 336 LTFR-NRTVAVWNF 348 (485)
Q Consensus 336 aS~s-D~TIklWd~ 348 (485)
++++ +.++.-+..
T Consensus 190 vt~sss~~l~~Yky 203 (418)
T PF14727_consen 190 VTASSSWTLECYKY 203 (418)
T ss_pred EEecCceeEEEecH
Confidence 9998 888887764
No 479
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=41.85 E-value=1.8e+02 Score=33.87 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=62.2
Q ss_pred CCEEEEEeCCCcEEEEECCC-------C-------e------eEEecccCCCceEEEEEc--CCCcEEEEEe-CCcEEEE
Q 011452 290 NEKLLVKQENENLQILDVRN-------F-------E------LTEVSRTEFMTPSAFIFL--YENQLFLTFR-NRTVAVW 346 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~t-------g-------~------~~~~l~gh~~~v~avaFs--pdg~llaS~s-D~TIklW 346 (485)
.+.|+++.+||.|-+|.+++ . . +.-.++ -....|.+++. ...+++|.++ -..|-|+
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 45677788999999996531 0 0 111111 23478999998 8888888888 7788888
Q ss_pred eCCC--cEEEEeecCCCCCCCCCeeEEEECCCC-----C-EEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 347 NFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQ-----D-LIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 347 d~~G--~ll~tl~gH~~~~~~~~v~svafSpDG-----~-~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
-+.. +....-..|... -+|.+|.|-++. . +|++++- .|.+-+|++
T Consensus 193 af~l~~~r~~~~~s~~~~---hNIP~VSFl~~~~d~~G~v~v~a~dI-----------~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHS---HNIPNVSFLDDDLDPNGHVKVVATDI-----------SGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccc---cCCCeeEeecCCCCCccceEEEEEec-----------cCcEEEEEE
Confidence 7642 111111122222 238899998754 2 6666654 577777666
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=39.70 E-value=1.8e+02 Score=32.49 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=55.8
Q ss_pred CEEEEEeCCCcEEEE-ECCCCeeEEecccCCCceEEEEEc--------CCC--cEEEEEe-CCcEEEEeCCCcEEEEeec
Q 011452 291 EKLLVKQENENLQIL-DVRNFELTEVSRTEFMTPSAFIFL--------YEN--QLFLTFR-NRTVAVWNFRGELVTSFED 358 (485)
Q Consensus 291 ~~lls~s~D~tIkIW-Dv~tg~~~~~l~gh~~~v~avaFs--------pdg--~llaS~s-D~TIklWd~~G~ll~tl~g 358 (485)
-.|++..+||-|--| |++.+-. .|.+.+..+.|. ||. +-|++.+ +|+..+.....+..--++-
T Consensus 281 ~SLLv~~~dG~vsQWFdvr~~~~-----p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~ 355 (733)
T COG4590 281 FSLLVVHEDGLVSQWFDVRRDGQ-----PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER 355 (733)
T ss_pred eeEEEEcCCCceeeeeeeecCCC-----CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh
Confidence 457788899999877 7664322 233333333333 333 3366666 7777776654221111111
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
-... ..-+++||+|.+|++.. .|.|++..+++
T Consensus 356 ~~~~-----~~~~~~Sp~~~~Ll~e~------------~gki~~~~l~N 387 (733)
T COG4590 356 AYQA-----PQLVAMSPNQAYLLSED------------QGKIRLAQLEN 387 (733)
T ss_pred hhcC-----cceeeeCcccchheeec------------CCceEEEEecC
Confidence 1111 35689999999999974 48888887654
No 481
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=38.47 E-value=2.9e+02 Score=29.96 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=15.6
Q ss_pred eeEEEECCCCCEEEEEec
Q 011452 368 TNNIYITSDQDLIISYCK 385 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~ 385 (485)
...|+|+|||++.|+-+.
T Consensus 179 g~~l~f~pDG~Lyvs~G~ 196 (399)
T COG2133 179 GGRLVFGPDGKLYVTTGS 196 (399)
T ss_pred cccEEECCCCcEEEEeCC
Confidence 578999999999998764
No 482
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=38.10 E-value=90 Score=34.87 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=14.3
Q ss_pred CeEEEEEcCCCCEEEE
Q 011452 458 DITALFYDEDRNEIYT 473 (485)
Q Consensus 458 ~V~sl~fspDg~~LaS 473 (485)
.++.++|+||+++|.-
T Consensus 503 E~tG~~fspDg~tlFv 518 (524)
T PF05787_consen 503 EITGPCFSPDGRTLFV 518 (524)
T ss_pred ccccceECCCCCEEEE
Confidence 7899999999999865
No 483
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=36.73 E-value=1.1e+02 Score=25.91 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=0.0
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
|+..+....-... -++|+++||+++|.-++. ..++|.++..+.
T Consensus 43 ~~~~~~va~g~~~-----aNGI~~s~~~k~lyVa~~----------~~~~I~vy~~~~ 85 (86)
T PF01731_consen 43 GKEVKVVASGFSF-----ANGIAISPDKKYLYVASS----------LAHSIHVYKRHK 85 (86)
T ss_pred CCEeEEeeccCCC-----CceEEEcCCCCEEEEEec----------cCCeEEEEEecC
No 484
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=36.06 E-value=5e+02 Score=26.71 Aligned_cols=71 Identities=10% Similarity=0.224 Sum_probs=47.6
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce---eEEEEEecCCCEEEEE-eCCCcEEEEEC
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN---KKVDFIEQFNEKLLVK-QENENLQILDV 307 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~---~~V~f~~~~~~~lls~-s~D~tIkIWDv 307 (485)
.|++|..-+++-+|+|++.- .+|-+.|-+||+.+..|.|....- ....|+-|.+=.++.. ..+++|.|.|=
T Consensus 145 HiNsV~~~~~G~yLiS~R~~--~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNT--STIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred EeeeeeecCCccEEEEeccc--CEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 57888777655566665533 699999999999999997642211 1233554555555543 47888999886
No 485
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=34.63 E-value=1.1e+03 Score=30.10 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=34.3
Q ss_pred eEEEEEcCCCcEEEEEeCC----cEEEEeCCCcEEEEeecCCCCCCC---------------------CCeeEEEECCCC
Q 011452 323 PSAFIFLYENQLFLTFRNR----TVAVWNFRGELVTSFEDHLLWHPD---------------------CNTNNIYITSDQ 377 (485)
Q Consensus 323 v~avaFspdg~llaS~sD~----TIklWd~~G~ll~tl~gH~~~~~~---------------------~~v~svafSpDG 377 (485)
..+++|+++|-+.++=+|+ .|+.-..+| .+.-|.|-...+.+ ....++|.||||
T Consensus 595 ~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg 673 (1899)
T KOG4659|consen 595 QRDIAVGTDGALYVAESDGRRINRVRKLSTDG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDG 673 (1899)
T ss_pred hhceeecCCceEEEEeccchhhhheEEeccCc-eEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCC
Confidence 3789999999988876643 233222234 23333332211100 125689999999
Q ss_pred CEEEE
Q 011452 378 DLIIS 382 (485)
Q Consensus 378 ~~LaS 382 (485)
..++.
T Consensus 674 ~v~IA 678 (1899)
T KOG4659|consen 674 DVIIA 678 (1899)
T ss_pred cEEEe
Confidence 98886
No 486
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.61 E-value=7.9e+02 Score=29.91 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=23.8
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecC
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK 223 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~ 223 (485)
+..++|| |.-+.||-+...+.|++.-..
T Consensus 38 ~~~~afD-~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 38 PSALAFD-PTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred Ccceeec-cccceEEEEEecccEEEeccc
Confidence 4468998 788999999999999999754
No 487
>PHA02790 Kelch-like protein; Provisional
Probab=33.26 E-value=6.7e+02 Score=27.32 Aligned_cols=139 Identities=12% Similarity=0.059 Sum_probs=70.7
Q ss_pred CCeEEEEeeCC--CcEEEeecCCCeE--EEEEcCCc-EEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE--EeecC
Q 011452 204 NGKVLTYSAQD--SIYKVFDLKNYTM--LYSISDKN-VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK--SFNHL 276 (485)
Q Consensus 204 nG~~Las~s~D--~tiKlWdl~~g~~--l~tl~~~~-V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~--tl~~~ 276 (485)
+|++.+.|+.+ .++..||..+.+- +-.++... -.+++...|...++++......++..+|.++.+-.. .+..
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~- 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY- 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC-
Confidence 68888888864 4577788765542 12222111 112333345555555433223567788887654332 1111
Q ss_pred Cccee-EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-C-----CcEEEEeCC
Q 011452 277 LHRNK-KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-N-----RTVAVWNFR 349 (485)
Q Consensus 277 ~~~~~-~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D-----~TIklWd~~ 349 (485)
.+.. .++ .. +++|.+-| |.+..+|.++.+-.....-....-.+-+-..+|++.+.|+ + .+|..+|.+
T Consensus 397 -~r~~~~~~--~~-~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 397 -PHYKSCAL--VF-GRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred -ccccceEE--EE-CCEEEEEC--CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 1111 122 12 45555433 3577899988776543211111111222244888888887 5 356677765
No 488
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=32.91 E-value=42 Score=26.02 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.0
Q ss_pred eEEEECCCCCEEEEEe
Q 011452 369 NNIYITSDQDLIISYC 384 (485)
Q Consensus 369 ~svafSpDG~~LaS~s 384 (485)
.-+|.++||++|+.|.
T Consensus 34 ~i~Y~~~dg~yli~G~ 49 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQ 49 (57)
T ss_dssp EEEEEETTSSEEEES-
T ss_pred eEEEEcCCCCEEEEeE
Confidence 3589999999999863
No 489
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=32.75 E-value=68 Score=22.40 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=18.6
Q ss_pred EEEecCEEEEEeCCCeEEeeeccc
Q 011452 101 IVAARDIVFALAQSGVCAAFCRET 124 (485)
Q Consensus 101 i~~s~~~ias~s~dgtiklW~~~t 124 (485)
++++++.|+.++.||.+..+|.+|
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 366689999999999999998763
No 490
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=32.71 E-value=2.5e+02 Score=26.11 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=21.0
Q ss_pred CceEEEEEcCCC-----c-EEEEEe-CCcEEEEeCCC
Q 011452 321 MTPSAFIFLYEN-----Q-LFLTFR-NRTVAVWNFRG 350 (485)
Q Consensus 321 ~~v~avaFspdg-----~-llaS~s-D~TIklWd~~G 350 (485)
..+.++++||-| + +||.-. ++.|.||.-.+
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999943 3 444555 88888888643
No 491
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=32.58 E-value=1.9e+02 Score=33.82 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=47.5
Q ss_pred chhHHHhhhccccccccccCCCCcccccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEE
Q 011452 61 TDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRIC 129 (485)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~ 129 (485)
...+..|..++-......-.++.......+++.-...|.+|... +-+|+..-+||+|.+.|+.|-+.+.
T Consensus 225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~ 295 (753)
T PF11635_consen 225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELN 295 (753)
T ss_pred cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhc
Confidence 34455666666433333334445555666677777889999888 8889999999999999998655443
No 492
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=31.89 E-value=3.4e+02 Score=31.68 Aligned_cols=92 Identities=12% Similarity=0.203 Sum_probs=59.0
Q ss_pred eeEEEEEecCCCEEEEEeCCCcEEEEECCCC-----eeEEecccCCCce----------EEEEEcCCCcEEEEEeCCcEE
Q 011452 280 NKKVDFIEQFNEKLLVKQENENLQILDVRNF-----ELTEVSRTEFMTP----------SAFIFLYENQLFLTFRNRTVA 344 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-----~~~~~l~gh~~~v----------~avaFspdg~llaS~sD~TIk 344 (485)
.-.|+|.|.+.+++|+--..|+.-|||+..+ ..++....+.+.+ ..+.|.++-..|+-++...+.
T Consensus 148 ~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~ 227 (765)
T PF10214_consen 148 HADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLM 227 (765)
T ss_pred cceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceE
Confidence 3489999877889999999999999999211 1122221222222 267788888888888878888
Q ss_pred EEeCCCcEE-E--EeecCCCCCCCCCeeEEEECCC
Q 011452 345 VWNFRGELV-T--SFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 345 lWd~~G~ll-~--tl~gH~~~~~~~~v~svafSpD 376 (485)
+.|+++... . .......| +.+|.-+|+
T Consensus 228 ~~d~~~~~~~~~l~~~~~~~~-----IlDv~~~~~ 257 (765)
T PF10214_consen 228 LIDFESNWQTEYLVTAKTWSW-----ILDVKRSPD 257 (765)
T ss_pred EEECCCCCccchhccCCChhh-----eeeEEecCC
Confidence 999963322 1 11222234 666776666
No 493
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.55 E-value=9.4e+02 Score=28.50 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=47.7
Q ss_pred cCCCEEEEEeCC----------CcEEEEECCCCeeEEe-cccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEe
Q 011452 288 QFNEKLLVKQEN----------ENLQILDVRNFELTEV-SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSF 356 (485)
Q Consensus 288 ~~~~~lls~s~D----------~tIkIWDv~tg~~~~~-l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl 356 (485)
|+++=|++.=.+ -.|+|++.. |.++.. +-.|. .+-..-|+.+..+++---||+|.+++..|+.+...
T Consensus 42 p~gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~ 119 (829)
T KOG2280|consen 42 PFGGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN 119 (829)
T ss_pred ccCCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhccc
Confidence 556666655333 348888887 554443 43444 67778899999988777799999999999877663
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=31.36 E-value=1.5e+02 Score=25.24 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=32.7
Q ss_pred CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe---CCcEEEE
Q 011452 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVW 346 (485)
Q Consensus 298 ~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s---D~TIklW 346 (485)
.+|-+--||..|++....+.+ -..++.|+++||++.++-+- -+-.|.|
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 456777889999987665544 34799999999999777654 4444554
No 495
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=30.72 E-value=1.7e+02 Score=22.84 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=16.0
Q ss_pred cEEEEEEeeCCCEEEEEEe
Q 011452 138 VIRSLFYNKNNDSLITVSV 156 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~ 156 (485)
.+++++..|||+.|+.++.
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4789999999999888664
No 496
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=30.46 E-value=1.4e+02 Score=20.70 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.6
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 011452 289 FNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~t 309 (485)
.++++.+++.|++|...|.+|
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 378899999999999999874
No 497
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=30.11 E-value=9.8e+02 Score=28.90 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=58.0
Q ss_pred ccceEEEEEe--cCEEEE-EeCCC---e--EEeeeccc-CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCC----
Q 011452 95 RSKIIEIVAA--RDIVFA-LAQSG---V--CAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDN---- 161 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias-~s~dg---t--iklW~~~t-G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d---- 161 (485)
..+|..=.+| |+.||= .+..+ . |.+-++.+ |--+--|.. .+..|.---...+|++.|+=-.+.+.+
T Consensus 349 ~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v-e~aaiprwrv~e~gdt~ivyv~~a~nn~d~~ 427 (912)
T TIGR02171 349 TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV-ENAAIPRWRVLENGDTVIVYVSDASNNKDDA 427 (912)
T ss_pred CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec-ccccccceEecCCCCeEEEEEcCCCCCcchh
Confidence 3344444455 666665 66655 3 33334333 333333544 344566667789999977644445444
Q ss_pred -CcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC
Q 011452 162 -FSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 162 -~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
|....-+++++ .+||+-.-++||... .-+.|+. |.++-+||+.
T Consensus 428 ~~~~~stw~v~f---~~gkfg~p~kl~dga---~hggvs~---~~~lavtga~ 471 (912)
T TIGR02171 428 TFAAYSTWQVPF---ANGKFGTPKKLFDGA---YHGGVSE---DLNLAVSGAR 471 (912)
T ss_pred hhhhcceEEEEe---cCCCCCCchhhhccc---ccccccc---CCceeeehhh
Confidence 33333344444 667764446688752 1135654 3566677763
No 498
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=28.58 E-value=1.3e+02 Score=33.98 Aligned_cols=60 Identities=3% Similarity=-0.089 Sum_probs=49.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 349 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~ 349 (485)
.++++++|..|-|||+|--.-.....+.+-...|--+..+.+|+.++..+..++-|-|+.
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 479999999999999996655555556677778888889999999998888889899874
No 499
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=28.38 E-value=68 Score=25.06 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=16.7
Q ss_pred CeEEEEEcCCCCEEEEecC
Q 011452 458 DITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~ 476 (485)
.+++++.-|||++|+.|+.
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 5678999999999999964
No 500
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=28.00 E-value=1.1e+02 Score=20.65 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.2
Q ss_pred cceEEEEEecCEEEEEeCCCeEEeee
Q 011452 96 SKIIEIVAARDIVFALAQSGVCAAFC 121 (485)
Q Consensus 96 s~V~~i~~s~~~ias~s~dgtiklW~ 121 (485)
..|..|+.....+|++...+.+|+|+
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 45788888899999999999999874
Done!